Query gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 411
No_of_seqs 153 out of 2782
Neff 6.8
Searched_HMMs 39220
Date Mon May 30 02:20:54 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780873.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00657 asp_kinases aspartat 100.0 0 0 907.1 30.7 403 1-408 1-504 (504)
2 PRK07431 aspartate kinase; Pro 100.0 0 0 892.8 36.1 403 1-409 1-412 (594)
3 PRK06635 aspartate kinase; Rev 100.0 0 0 867.4 35.6 402 1-408 1-402 (402)
4 PRK09436 thrA bifunctional asp 100.0 0 0 843.4 31.8 398 1-411 1-464 (817)
5 COG0527 LysC Aspartokinases [A 100.0 0 0 840.1 33.5 399 1-409 1-447 (447)
6 PRK06291 aspartate kinase; Pro 100.0 0 0 834.8 34.1 400 3-411 2-466 (466)
7 PRK08210 aspartate kinase I; R 100.0 0 0 830.7 34.6 395 1-411 1-405 (405)
8 PRK09034 aspartate kinase; Rev 100.0 0 0 808.8 32.0 392 4-408 2-450 (450)
9 PRK09466 metL bifunctional asp 100.0 0 0 809.6 30.5 394 1-411 10-457 (810)
10 PRK08841 aspartate kinase; Val 100.0 0 0 789.0 33.7 381 1-411 1-381 (392)
11 PRK09084 aspartate kinase III; 100.0 0 0 781.8 30.8 388 3-408 1-447 (447)
12 PRK05925 aspartate kinase; Pro 100.0 0 0 765.6 32.3 393 1-411 1-437 (440)
13 PRK08961 bifunctional aspartat 100.0 0 0 759.4 24.8 396 1-409 7-461 (865)
14 PRK09181 aspartate kinase; Val 100.0 0 0 693.7 29.8 384 1-409 2-468 (476)
15 KOG0456 consensus 100.0 0 0 642.0 19.2 391 3-409 80-537 (559)
16 TIGR00656 asp_kin_monofn aspar 100.0 0 0 579.9 27.5 403 1-409 1-480 (480)
17 PRK08373 aspartate kinase; Val 100.0 0 0 576.8 20.2 296 2-330 4-338 (359)
18 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 0 0 573.8 19.8 239 3-246 1-244 (244)
19 cd04244 AAK_AK-LysC-like AAK_A 100.0 0 0 574.3 19.3 239 3-246 1-298 (298)
20 cd04246 AAK_AK-DapG-like AAK_A 100.0 0 0 572.0 19.7 239 3-246 1-239 (239)
21 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 0 0 572.1 18.5 239 3-246 1-239 (239)
22 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 0 0 567.3 19.0 238 1-246 1-294 (294)
23 cd04243 AAK_AK-HSDH-like AAK_A 100.0 0 0 560.6 19.3 236 4-246 2-293 (293)
24 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 0 0 559.6 18.7 236 3-246 1-292 (292)
25 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 0 0 556.6 18.5 237 1-246 1-288 (288)
26 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 0 0 551.7 19.4 239 3-246 1-295 (295)
27 cd04234 AAK_AK AAK_AK: Amino A 100.0 0 0 549.1 18.9 226 3-246 1-227 (227)
28 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 0 0 539.4 17.1 238 3-247 2-305 (306)
29 cd04248 AAK_AK-Ectoine AAK_AK- 100.0 0 0 500.8 15.9 230 4-246 2-304 (304)
30 cd02115 AAK Amino Acid Kinases 100.0 0 0 390.6 20.0 240 5-245 1-248 (248)
31 TIGR02078 AspKin_pair Pyrococc 100.0 0 0 387.9 14.2 292 3-330 1-339 (341)
32 PRK07431 aspartate kinase; Pro 100.0 6.6E-39 1.7E-43 281.8 18.2 201 211-411 364-587 (594)
33 pfam00696 AA_kinase Amino acid 100.0 2.9E-39 7.3E-44 284.3 15.9 222 2-230 1-230 (230)
34 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 2.1E-37 5.4E-42 271.7 15.5 219 2-246 1-231 (231)
35 PRK00358 pyrH uridylate kinase 100.0 1.7E-31 4.3E-36 232.0 16.5 219 2-246 1-231 (231)
36 cd04239 AAK_UMPK-like AAK_UMPK 100.0 6.6E-32 1.7E-36 234.7 14.2 218 3-246 1-229 (229)
37 TIGR02075 pyrH_bact uridylate 100.0 7.5E-29 1.9E-33 214.1 14.8 217 2-246 2-236 (236)
38 PRK12314 gamma-glutamyl kinase 100.0 6.7E-29 1.7E-33 214.5 11.8 231 2-247 10-263 (265)
39 COG0528 PyrH Uridylate kinase 100.0 1.3E-26 3.4E-31 199.0 17.9 220 1-246 5-237 (238)
40 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 1.8E-25 4.5E-30 191.4 17.6 206 3-245 1-220 (221)
41 PRK12443 uridylate kinase; Rev 99.9 2.2E-25 5.6E-30 190.8 17.0 220 2-248 5-239 (247)
42 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 5E-26 1.3E-30 195.2 11.1 228 3-245 1-250 (251)
43 TIGR02076 pyrH_arch uridylate 99.9 9.6E-24 2.5E-28 179.7 14.8 196 4-233 1-210 (232)
44 cd04256 AAK_P5CS_ProBA AAK_P5C 99.9 6.3E-22 1.6E-26 167.5 12.5 231 2-245 9-283 (284)
45 PRK13402 gamma-glutamyl kinase 99.9 1E-21 2.6E-26 166.1 12.7 230 2-251 6-258 (363)
46 PRK05429 gamma-glutamyl kinase 99.9 1.7E-21 4.3E-26 164.6 11.8 231 1-251 8-265 (372)
47 TIGR01027 proB glutamate 5-kin 99.9 6.5E-21 1.7E-25 160.7 13.3 229 2-248 1-264 (379)
48 COG0263 ProB Glutamate 5-kinas 99.8 1.4E-19 3.6E-24 151.7 14.2 229 1-249 6-261 (369)
49 cd04241 AAK_FomA-like AAK_FomA 99.8 1.7E-19 4.3E-24 151.2 14.3 226 3-245 1-252 (252)
50 cd04937 ACT_AKi-DapG-BS_2 ACT 99.8 1.5E-18 3.9E-23 144.7 9.1 64 345-408 1-64 (64)
51 cd04255 AAK_UMPK-MosAB AAK_UMP 99.8 2.5E-17 6.3E-22 136.6 14.3 215 3-246 32-262 (262)
52 cd04922 ACT_AKi-HSDH-ThrA_2 AC 99.7 2.8E-17 7.2E-22 136.2 9.2 64 345-408 1-66 (66)
53 cd04936 ACT_AKii-LysC-BS-like_ 99.7 3E-17 7.7E-22 136.0 9.0 63 346-408 1-63 (63)
54 cd04919 ACT_AK-Hom3_2 ACT doma 99.7 2.9E-17 7.3E-22 136.2 8.8 64 345-408 1-66 (66)
55 cd04923 ACT_AK-LysC-DapG-like_ 99.7 3.7E-17 9.3E-22 135.4 9.0 63 346-408 1-63 (63)
56 cd04924 ACT_AK-Arch_2 ACT doma 99.7 6.9E-17 1.7E-21 133.6 9.2 64 345-408 1-66 (66)
57 PRK00942 acetylglutamate kinas 99.7 1.1E-15 2.9E-20 125.4 14.8 231 3-245 1-261 (262)
58 cd04238 AAK_NAGK-like AAK_NAGK 99.7 1.3E-15 3.4E-20 125.0 15.0 220 4-235 1-240 (256)
59 cd04921 ACT_AKi-HSDH-ThrA-like 99.7 1.8E-16 4.5E-21 130.8 7.7 67 345-411 1-69 (80)
60 cd04916 ACT_AKiii-YclM-BS_2 AC 99.7 2.9E-16 7.4E-21 129.4 8.8 63 345-407 1-65 (66)
61 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.6 3.1E-14 7.9E-19 115.7 16.2 222 2-232 15-260 (279)
62 COG0548 ArgB Acetylglutamate k 99.6 1.9E-14 5E-19 117.1 13.5 236 1-246 2-264 (265)
63 CHL00202 argB acetylglutamate 99.6 9.5E-14 2.4E-18 112.5 16.1 225 2-234 24-265 (284)
64 cd04918 ACT_AK1-AT_2 ACT domai 99.6 3.6E-15 9.2E-20 122.0 7.9 62 346-408 2-65 (65)
65 cd04892 ACT_AK-like_2 ACT doma 99.6 6.4E-15 1.6E-19 120.3 9.0 63 346-408 1-65 (65)
66 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.5 4.6E-13 1.2E-17 107.9 14.7 215 4-231 1-233 (252)
67 cd04917 ACT_AKiii-LysC-EC_2 AC 99.5 2.6E-14 6.7E-19 116.2 8.2 62 345-408 1-64 (64)
68 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.5 4.3E-13 1.1E-17 108.0 13.5 211 4-234 1-243 (257)
69 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.5 2.1E-12 5.4E-17 103.4 15.9 219 2-234 19-263 (280)
70 TIGR00761 argB acetylglutamate 99.5 2E-13 5E-18 110.3 10.1 210 3-225 1-250 (254)
71 PRK05279 N-acetylglutamate syn 99.5 2.3E-12 6E-17 103.1 14.8 263 2-295 26-322 (441)
72 cd04915 ACT_AK-Ectoine_2 ACT d 99.4 6.4E-13 1.6E-17 106.9 9.0 64 344-408 1-66 (66)
73 KOG1154 consensus 99.4 1.2E-12 3.1E-17 105.0 10.2 217 2-234 10-257 (285)
74 PRK12353 carbamate kinase; Rev 99.4 4.6E-12 1.2E-16 101.1 13.0 220 1-230 2-294 (312)
75 cd04252 AAK_NAGK-fArgBP AAK_NA 99.3 3.3E-11 8.3E-16 95.4 12.9 186 5-204 2-197 (248)
76 cd04913 ACT_AKii-LysC-BS-like_ 99.3 1.8E-12 4.6E-17 103.9 4.6 74 266-340 1-74 (75)
77 cd04240 AAK_UC AAK_UC: Unchara 99.3 1.2E-10 3E-15 91.7 12.5 190 5-245 1-203 (203)
78 COG1608 Predicted archaeal kin 99.3 1.3E-10 3.3E-15 91.3 12.6 219 1-246 1-251 (252)
79 PRK04531 acetylglutamate kinas 99.2 3E-10 7.7E-15 88.9 11.5 236 2-252 21-277 (421)
80 cd04236 AAK_NAGS-Urea AAK_NAGS 99.2 4.9E-10 1.3E-14 87.5 12.1 179 2-202 36-217 (271)
81 PRK12686 carbamate kinase; Rev 99.1 2.1E-09 5.3E-14 83.3 12.6 220 1-230 3-295 (313)
82 TIGR01092 P5CS delta l-pyrroli 99.1 4.3E-10 1.1E-14 87.8 9.1 222 1-246 7-279 (738)
83 PRK09436 thrA bifunctional asp 99.1 9.8E-10 2.5E-14 85.4 8.9 74 336-409 306-381 (817)
84 PRK12454 carbamate kinase-like 99.1 1.8E-08 4.7E-13 76.9 14.9 239 1-246 1-312 (313)
85 cd04891 ACT_AK-LysC-DapG-like_ 98.9 3.8E-10 9.8E-15 88.2 2.8 61 267-328 1-61 (61)
86 cd04868 ACT_AK-like ACT domain 98.9 2.2E-09 5.7E-14 83.0 4.9 58 346-403 1-60 (60)
87 cd04235 AAK_CK AAK_CK: Carbama 98.9 1E-07 2.6E-12 71.9 12.9 219 3-230 1-291 (308)
88 PRK09411 carbamate kinase; Rev 98.8 1.3E-07 3.3E-12 71.1 12.6 219 1-230 1-279 (297)
89 cd04921 ACT_AKi-HSDH-ThrA-like 98.8 4.7E-09 1.2E-13 80.8 4.9 73 266-342 1-79 (80)
90 PRK06291 aspartate kinase; Pro 98.7 1.6E-07 4.2E-12 70.5 10.8 113 281-408 272-386 (466)
91 cd04920 ACT_AKiii-DAPDC_2 ACT 98.7 7.1E-09 1.8E-13 79.6 2.7 62 346-407 1-62 (63)
92 PRK12354 carbamate kinase; Rev 98.7 7.6E-07 1.9E-11 66.0 12.7 236 1-247 1-301 (302)
93 PRK12352 putative carbamate ki 98.7 3E-06 7.5E-11 62.0 15.4 239 1-246 1-314 (316)
94 cd04924 ACT_AK-Arch_2 ACT doma 98.6 2.9E-08 7.3E-13 75.6 3.4 63 266-332 1-65 (66)
95 cd04916 ACT_AKiii-YclM-BS_2 AC 98.6 3.4E-08 8.6E-13 75.1 3.5 61 267-331 2-64 (66)
96 TIGR00657 asp_kinases aspartat 98.6 4.4E-07 1.1E-11 67.6 8.6 232 153-408 133-418 (504)
97 cd04919 ACT_AK-Hom3_2 ACT doma 98.6 4.4E-08 1.1E-12 74.3 3.5 61 267-331 2-64 (66)
98 COG0527 LysC Aspartokinases [A 98.6 6.7E-07 1.7E-11 66.4 9.5 111 282-408 259-372 (447)
99 cd04922 ACT_AKi-HSDH-ThrA_2 AC 98.6 5E-08 1.3E-12 74.0 3.6 61 267-331 2-64 (66)
100 PRK09084 aspartate kinase III; 98.5 1.2E-06 3.1E-11 64.6 8.9 105 282-402 259-363 (447)
101 COG0549 ArcC Carbamate kinase 98.5 1.5E-05 3.9E-10 57.2 14.2 217 2-231 1-295 (312)
102 PRK09034 aspartate kinase; Rev 98.5 1.5E-07 3.8E-12 70.7 3.9 112 283-408 260-376 (450)
103 cd04913 ACT_AKii-LysC-BS-like_ 98.4 1.9E-06 4.7E-11 63.4 8.5 58 346-405 2-64 (75)
104 PRK09181 aspartate kinase; Val 98.4 8.6E-06 2.2E-10 58.9 11.4 111 283-408 283-395 (476)
105 COG2054 Uncharacterized archae 98.4 4.6E-06 1.2E-10 60.7 9.8 74 153-234 118-191 (212)
106 cd04892 ACT_AK-like_2 ACT doma 98.3 4.2E-07 1.1E-11 67.7 3.2 60 268-331 2-63 (65)
107 PRK09466 metL bifunctional asp 98.3 1E-05 2.7E-10 58.3 10.3 70 257-332 382-453 (810)
108 PRK08210 aspartate kinase I; R 98.3 1.3E-05 3.4E-10 57.6 10.5 111 283-405 219-329 (405)
109 cd04935 ACT_AKiii-DAPDC_1 ACT 98.3 5.1E-07 1.3E-11 67.2 2.6 47 266-318 1-49 (75)
110 cd04891 ACT_AK-LysC-DapG-like_ 98.2 5.7E-06 1.5E-10 60.1 7.8 55 346-402 1-60 (61)
111 cd04918 ACT_AK1-AT_2 ACT domai 98.2 1.1E-06 2.7E-11 65.0 3.3 55 273-331 9-63 (65)
112 PRK06635 aspartate kinase; Rev 98.2 1.5E-05 3.9E-10 57.2 8.5 107 283-406 214-325 (402)
113 cd04912 ACT_AKiii-LysC-EC-like 98.2 1.1E-06 2.9E-11 64.8 2.7 67 267-342 2-74 (75)
114 cd04932 ACT_AKiii-LysC-EC_1 AC 98.1 1.3E-06 3.2E-11 64.5 2.5 47 266-318 1-49 (75)
115 cd04868 ACT_AK-like ACT domain 98.1 1.3E-06 3.4E-11 64.3 1.5 57 268-328 2-60 (60)
116 cd04936 ACT_AKii-LysC-BS-like_ 98.1 2.9E-06 7.5E-11 62.0 3.3 58 269-332 3-62 (63)
117 cd04923 ACT_AK-LysC-DapG-like_ 98.1 3.2E-06 8.3E-11 61.7 3.3 58 269-332 3-62 (63)
118 PRK08961 bifunctional aspartat 98.0 7.6E-05 1.9E-09 52.5 10.3 105 284-404 276-387 (865)
119 cd04937 ACT_AKi-DapG-BS_2 ACT 98.0 3.3E-06 8.4E-11 61.7 3.2 60 267-332 2-63 (64)
120 TIGR00746 arcC carbamate kinas 98.0 0.0003 7.6E-09 48.5 12.9 222 2-230 1-302 (321)
121 cd04933 ACT_AK1-AT_1 ACT domai 98.0 4.4E-06 1.1E-10 60.9 3.0 46 267-318 2-49 (78)
122 TIGR00656 asp_kin_monofn aspar 98.0 3.4E-05 8.6E-10 54.9 7.3 124 280-408 265-394 (480)
123 cd04934 ACT_AK-Hom3_1 CT domai 97.9 9.4E-06 2.4E-10 58.6 3.6 59 268-332 3-65 (73)
124 cd04912 ACT_AKiii-LysC-EC-like 97.8 0.00011 2.8E-09 51.4 7.8 59 346-404 2-67 (75)
125 cd04917 ACT_AKiii-LysC-EC_2 AC 97.8 1.7E-05 4.3E-10 56.9 3.3 59 267-331 2-62 (64)
126 cd04915 ACT_AK-Ectoine_2 ACT d 97.8 2.2E-05 5.6E-10 56.1 3.6 61 266-331 2-64 (66)
127 PRK08841 aspartate kinase; Val 97.7 3.7E-05 9.5E-10 54.6 3.6 66 260-332 312-377 (392)
128 KOG0456 consensus 97.6 3.9E-05 9.9E-10 54.5 2.8 68 260-331 466-534 (559)
129 TIGR01890 N-Ac-Glu-synth amino 97.6 0.0007 1.8E-08 46.0 9.0 257 2-295 18-319 (439)
130 cd04933 ACT_AK1-AT_1 ACT domai 97.4 0.00061 1.6E-08 46.4 6.8 48 346-393 2-49 (78)
131 cd04934 ACT_AK-Hom3_1 CT domai 97.4 0.00087 2.2E-08 45.4 7.6 58 347-404 3-65 (73)
132 COG4747 ACT domain-containing 97.3 0.0035 9E-08 41.3 10.0 117 274-405 10-129 (142)
133 cd04911 ACT_AKiii-YclM-BS_1 AC 97.3 0.00024 6.2E-09 49.1 3.9 70 267-342 2-75 (76)
134 cd04935 ACT_AKiii-DAPDC_1 ACT 97.3 0.00064 1.6E-08 46.3 6.0 48 346-393 2-49 (75)
135 cd04932 ACT_AKiii-LysC-EC_1 AC 97.2 0.0009 2.3E-08 45.3 6.1 59 346-404 2-67 (75)
136 PRK05925 aspartate kinase; Pro 97.2 0.00031 7.8E-09 48.4 3.2 109 283-406 251-360 (440)
137 cd04890 ACT_AK-like_1 ACT doma 97.1 0.00035 9E-09 48.0 2.4 49 269-323 3-53 (62)
138 LOAD_ACT consensus 97.0 0.00083 2.1E-08 45.5 3.9 62 273-334 5-66 (76)
139 PRK11589 gcvR glycine cleavage 96.7 0.019 5E-07 36.3 9.2 142 263-410 5-173 (183)
140 cd04914 ACT_AKi-DapG-BS_1 ACT 96.7 0.0011 2.9E-08 44.6 2.7 57 268-330 3-59 (67)
141 cd04890 ACT_AK-like_1 ACT doma 96.7 0.0059 1.5E-07 39.8 6.4 58 347-404 2-59 (62)
142 COG3830 ACT domain-containing 96.6 0.0051 1.3E-07 40.2 5.6 38 267-305 4-41 (90)
143 cd04872 ACT_1ZPV ACT domain pr 96.5 0.0053 1.4E-07 40.1 5.2 61 346-409 2-73 (88)
144 PRK00194 hypothetical protein; 96.4 0.0061 1.5E-07 39.7 4.9 32 346-380 4-35 (90)
145 COG3603 Uncharacterized conser 96.3 0.029 7.4E-07 35.1 8.0 69 336-405 54-122 (128)
146 pfam01842 ACT ACT domain. This 96.2 0.02 5E-07 36.3 6.5 50 356-405 8-64 (66)
147 pfam01842 ACT ACT domain. This 96.1 0.0059 1.5E-07 39.8 3.4 57 273-329 6-63 (66)
148 PRK11895 ilvH acetolactate syn 96.0 0.098 2.5E-06 31.6 9.3 126 274-404 9-140 (161)
149 LOAD_ACT consensus 95.7 0.02 5E-07 36.3 4.8 51 354-404 5-61 (76)
150 cd04872 ACT_1ZPV ACT domain pr 95.7 0.017 4.3E-07 36.7 4.4 66 268-336 3-72 (88)
151 PRK00194 hypothetical protein; 95.6 0.02 5.1E-07 36.2 4.5 67 267-336 4-74 (90)
152 cd04870 ACT_PSP_1 CT domains f 95.6 0.048 1.2E-06 33.6 6.3 30 348-380 2-31 (75)
153 cd04881 ACT_HSDH-Hom ACT_HSDH_ 95.3 0.016 4.2E-07 36.8 3.0 60 273-332 6-65 (79)
154 CHL00100 ilvH acetohydroxyacid 95.2 0.2 5.1E-06 29.5 8.5 125 274-403 9-139 (172)
155 cd04870 ACT_PSP_1 CT domains f 95.2 0.036 9.1E-07 34.5 4.6 67 269-336 2-69 (75)
156 cd04882 ACT_Bt0572_2 C-termina 95.1 0.053 1.3E-06 33.4 5.3 55 351-405 2-60 (65)
157 cd04920 ACT_AKiii-DAPDC_2 ACT 95.1 0.012 3E-07 37.8 1.9 53 273-331 9-61 (63)
158 cd02116 ACT ACT domains are co 94.8 0.048 1.2E-06 33.6 4.3 45 358-402 8-59 (60)
159 COG3830 ACT domain-containing 94.7 0.026 6.7E-07 35.4 2.8 59 344-405 2-64 (90)
160 cd04914 ACT_AKi-DapG-BS_1 ACT 94.4 0.18 4.7E-06 29.8 6.6 46 359-404 13-58 (67)
161 cd04889 ACT_PDH-BS-like C-term 94.1 0.15 3.8E-06 30.4 5.7 47 354-402 4-55 (56)
162 cd04888 ACT_PheB-BS C-terminal 94.0 0.062 1.6E-06 32.9 3.5 66 273-339 6-72 (76)
163 cd04908 ACT_Bt0572_1 N-termina 93.9 0.19 4.8E-06 29.7 5.8 53 348-405 4-60 (66)
164 PRK00275 glnD PII uridylyl-tra 93.8 0.47 1.2E-05 27.0 7.8 121 267-392 705-862 (894)
165 cd02116 ACT ACT domains are co 93.6 0.04 1E-06 34.2 1.9 51 275-325 6-57 (60)
166 cd04910 ACT_AK-Ectoine_1 ACT d 93.4 0.12 3.2E-06 30.9 4.2 61 273-340 10-70 (71)
167 KOG2436 consensus 93.2 0.74 1.9E-05 25.7 8.4 183 2-201 96-299 (520)
168 cd04911 ACT_AKiii-YclM-BS_1 AC 93.1 0.45 1.2E-05 27.1 6.7 64 346-409 2-70 (76)
169 cd04878 ACT_AHAS N-terminal AC 93.0 0.11 2.9E-06 31.2 3.4 46 274-319 7-52 (72)
170 PRK04435 hypothetical protein; 92.4 0.19 4.7E-06 29.7 3.9 63 269-332 69-133 (146)
171 PRK13562 acetolactate synthase 91.9 0.25 6.2E-06 28.9 4.0 68 274-341 9-76 (84)
172 COG4492 PheB ACT domain-contai 91.8 0.3 7.7E-06 28.3 4.4 76 269-354 73-150 (150)
173 cd04876 ACT_RelA-SpoT ACT dom 91.8 0.23 5.9E-06 29.0 3.8 62 275-337 6-67 (71)
174 COG4747 ACT domain-containing 91.5 0.77 2E-05 25.6 6.2 109 214-330 19-129 (142)
175 PRK01759 glnD PII uridylyl-tra 91.5 1.2 3E-05 24.3 8.2 118 268-392 687-839 (862)
176 cd04869 ACT_GcvR_2 ACT domains 91.4 1.1 2.8E-05 24.5 6.9 62 275-336 7-75 (81)
177 COG0440 IlvH Acetolactate synt 91.2 1.3 3.2E-05 24.1 8.6 125 274-403 11-141 (163)
178 PRK05007 PII uridylyl-transfer 91.1 1.3 3.2E-05 24.1 12.7 117 268-391 700-852 (881)
179 cd04882 ACT_Bt0572_2 C-termina 90.5 0.25 6.5E-06 28.8 3.0 56 273-330 5-60 (65)
180 PRK06349 homoserine dehydrogen 90.4 0.3 7.7E-06 28.3 3.3 49 356-404 360-416 (432)
181 PRK06737 acetolactate synthase 90.2 0.25 6.3E-06 28.9 2.7 57 274-330 9-67 (76)
182 PRK05092 PII uridylyl-transfer 90.1 1.6 4E-05 23.5 8.8 122 265-391 734-893 (934)
183 PRK03059 PII uridylyl-transfer 90.1 1.6 4E-05 23.5 8.0 115 274-392 686-835 (857)
184 PRK04374 PII uridylyl-transfer 89.2 1.8 4.6E-05 23.0 8.9 122 266-392 690-844 (869)
185 PRK08178 acetolactate synthase 88.8 0.46 1.2E-05 27.0 3.3 57 274-330 15-72 (96)
186 COG3603 Uncharacterized conser 87.5 0.6 1.5E-05 26.3 3.2 64 260-330 57-122 (128)
187 cd04909 ACT_PDH-BS C-terminal 87.4 2.3 6E-05 22.3 6.7 56 273-329 7-64 (69)
188 cd04929 ACT_TPH ACT domain of 86.2 1.1 2.9E-05 24.4 4.0 60 274-334 7-67 (74)
189 cd04886 ACT_ThrD-II-like C-ter 85.7 1.1 2.7E-05 24.6 3.6 60 274-333 5-67 (73)
190 COG2061 ACT-domain-containing 85.7 2.9 7.3E-05 21.7 10.7 133 268-405 5-154 (170)
191 PRK10872 relA GDP/GTP pyrophos 85.0 1.3 3.3E-05 24.0 3.8 87 313-404 631-731 (743)
192 COG2150 Predicted regulator of 85.0 2.6 6.6E-05 22.0 5.4 58 344-402 92-155 (167)
193 cd04883 ACT_AcuB C-terminal AC 84.9 0.96 2.5E-05 24.9 3.1 56 274-329 8-63 (72)
194 cd04904 ACT_AAAH ACT domain of 83.4 2 5E-05 22.8 4.2 60 274-334 7-67 (74)
195 PRK00466 acetyl-lysine deacety 83.2 3.7 9.3E-05 21.0 6.3 94 46-164 8-101 (345)
196 PRK01215 competence damage-ind 83.0 2.1 5.4E-05 22.6 4.2 68 77-167 24-91 (264)
197 cd04901 ACT_3PGDH C-terminal A 81.8 1.2 2.9E-05 24.4 2.5 26 275-300 7-33 (69)
198 PRK11092 bifunctional (p)ppGpp 81.5 2.5 6.4E-05 22.1 4.1 87 313-405 592-691 (702)
199 cd04893 ACT_GcvR_1 ACT domains 81.4 4.3 0.00011 20.5 6.2 22 275-296 9-30 (77)
200 cd00885 cinA Competence-damage 81.2 2.7 6.9E-05 21.9 4.2 68 77-167 20-87 (170)
201 PRK08577 hypothetical protein; 81.1 1.9 4.8E-05 23.0 3.3 24 274-297 63-86 (135)
202 cd04879 ACT_3PGDH-like ACT_3PG 81.0 0.77 2E-05 25.5 1.4 27 275-301 7-33 (71)
203 PRK11898 prephenate dehydratas 80.8 4.5 0.00011 20.4 6.3 149 167-334 110-265 (285)
204 PRK03670 competence damage-ind 80.3 2.6 6.5E-05 22.0 3.8 69 77-168 21-90 (252)
205 COG2716 GcvR Glycine cleavage 79.8 4.4 0.00011 20.5 4.9 29 347-378 94-122 (176)
206 cd04905 ACT_CM-PDT C-terminal 79.7 4.8 0.00012 20.2 6.9 58 274-332 8-68 (80)
207 PRK08652 acetylornithine deace 78.7 5.2 0.00013 20.0 5.4 40 47-93 1-40 (349)
208 cd04902 ACT_3PGDH-xct C-termin 78.3 1.1 2.9E-05 24.4 1.5 27 275-301 7-33 (73)
209 TIGR01761 thiaz-red thiazoliny 77.2 5.7 0.00015 19.7 5.3 94 148-250 44-149 (378)
210 PRK05111 acetylornithine deace 76.5 3.3 8.5E-05 21.3 3.5 104 48-166 5-122 (383)
211 cd04871 ACT_PSP_2 ACT domains 76.0 2.8 7.1E-05 21.8 3.0 67 270-336 3-78 (84)
212 cd04880 ACT_AAAH-PDT-like ACT 75.2 4 0.0001 20.7 3.6 59 274-333 6-67 (75)
213 PRK11790 D-3-phosphoglycerate 75.0 2.3 5.9E-05 22.4 2.3 58 344-404 337-398 (409)
214 cd04931 ACT_PAH ACT domain of 74.5 4.3 0.00011 20.5 3.6 62 273-335 20-83 (90)
215 PRK05294 carB carbamoyl phosph 74.5 6.7 0.00017 19.2 8.0 11 288-298 583-593 (1063)
216 PTZ00286 6-phospho-1-fructokin 73.3 6.5 0.00016 19.3 4.3 40 257-299 255-294 (486)
217 cd04903 ACT_LSD C-terminal ACT 73.2 2.3 5.7E-05 22.4 1.9 25 275-299 7-31 (71)
218 PRK00549 competence damage-ind 72.8 6.3 0.00016 19.4 4.1 36 121-167 53-88 (413)
219 PRK13011 formyltetrahydrofolat 72.5 6.8 0.00017 19.2 4.2 11 337-347 274-284 (287)
220 PRK06545 prephenate dehydrogen 71.1 8 0.0002 18.7 6.1 57 344-403 287-351 (357)
221 TIGR02198 rfaE_dom_I rfaE bifu 71.0 4.3 0.00011 20.5 2.9 148 143-318 62-252 (321)
222 PRK03673 competence damage-ind 70.8 6.7 0.00017 19.2 3.9 18 125-142 58-75 (396)
223 cd04875 ACT_F4HF-DF N-terminal 70.2 3.4 8.6E-05 21.2 2.3 63 270-333 3-69 (74)
224 COG1058 CinA Predicted nucleot 69.5 7.2 0.00018 19.0 3.8 70 77-169 22-91 (255)
225 PRK03381 PII uridylyl-transfer 69.5 8.7 0.00022 18.5 7.6 114 274-392 607-757 (781)
226 TIGR01127 ilvA_1Cterm threonin 68.9 5.6 0.00014 19.7 3.2 49 356-404 314-374 (381)
227 TIGR01910 DapE-ArgE acetylorni 68.6 9 0.00023 18.3 5.5 93 76-169 22-133 (427)
228 COG0317 SpoT Guanosine polypho 67.8 8.9 0.00023 18.4 4.0 87 313-404 592-691 (701)
229 TIGR00174 miaA tRNA delta(2)-i 67.5 1.8 4.5E-05 23.1 0.4 67 161-231 25-97 (307)
230 cd04899 ACT_ACR-UUR-like_2 C-t 67.2 9.6 0.00025 18.2 4.5 23 275-297 8-30 (70)
231 pfam04359 DUF493 Protein of un 65.9 6.1 0.00016 19.5 2.9 57 276-332 24-82 (90)
232 PRK11899 prephenate dehydratas 65.3 9.8 0.00025 18.1 3.8 134 189-333 122-262 (284)
233 pfam11713 Peptidase_C80 Peptid 65.3 10 0.00027 17.9 6.1 40 347-386 106-151 (160)
234 cd04884 ACT_CBS C-terminal ACT 65.2 10 0.00027 17.9 5.9 30 274-303 6-35 (72)
235 PRK13581 D-3-phosphoglycerate 65.2 10 0.00027 17.9 7.7 241 144-404 223-512 (524)
236 smart00852 MoCF_biosynth Proba 64.7 8.1 0.00021 18.7 3.3 69 75-166 17-85 (135)
237 COG1707 ACT domain-containing 64.1 11 0.00028 17.8 6.0 24 151-174 91-114 (218)
238 TIGR01967 DEAH_box_HrpA ATP-de 63.2 5 0.00013 20.1 2.0 33 118-153 74-113 (1320)
239 COG0855 Ppk Polyphosphate kina 63.1 2.3 5.8E-05 22.4 0.2 71 110-192 407-491 (696)
240 PRK07334 threonine dehydratase 59.8 13 0.00032 17.4 3.6 52 354-405 329-392 (399)
241 cd04874 ACT_Af1403 N-terminal 59.6 9.4 0.00024 18.2 2.9 53 275-328 8-61 (72)
242 PRK06027 purU formyltetrahydro 59.5 13 0.00034 17.2 4.0 13 336-348 271-283 (285)
243 KOG2663 consensus 59.5 7.5 0.00019 18.9 2.4 59 274-332 84-144 (309)
244 cd04873 ACT_UUR-ACR-like ACT d 59.0 13 0.00034 17.2 4.1 27 348-377 3-29 (70)
245 TIGR02836 spore_IV_A stage IV 58.7 4.7 0.00012 20.2 1.2 112 277-411 314-437 (492)
246 pfam02503 PP_kinase Polyphosph 58.4 4.3 0.00011 20.5 1.0 70 110-191 398-481 (678)
247 PRK06830 diphosphate--fructose 58.3 14 0.00035 17.1 4.1 40 257-299 239-278 (442)
248 TIGR02482 PFKA_ATP 6-phosphofr 57.9 14 0.00036 17.1 6.5 74 79-170 104-189 (302)
249 PRK06382 threonine dehydratase 57.8 14 0.00036 17.1 3.6 55 354-408 330-397 (400)
250 PRK08198 threonine dehydratase 56.1 15 0.00038 16.9 3.6 76 319-405 311-398 (406)
251 TIGR00737 nifR3_yhdG putative 55.8 7.9 0.0002 18.7 2.0 21 38-58 10-31 (336)
252 PRK13983 diaminopimelate amino 55.0 16 0.0004 16.8 5.9 43 47-92 5-48 (399)
253 pfam00994 MoCF_biosynth Probab 54.0 16 0.00041 16.7 4.1 69 75-166 16-84 (140)
254 TIGR00514 accC acetyl-CoA carb 53.3 17 0.00042 16.6 6.0 110 22-142 14-141 (451)
255 COG3602 Uncharacterized protei 52.0 12 0.0003 17.6 2.4 80 242-332 50-131 (134)
256 PRK02047 hypothetical protein; 51.9 17 0.00043 16.6 3.1 57 276-332 25-83 (91)
257 PRK00341 hypothetical protein; 51.5 16 0.0004 16.7 3.0 57 275-332 25-83 (91)
258 COG5140 UFD1 Ubiquitin fusion- 49.9 11 0.00028 17.8 1.9 54 171-229 14-70 (331)
259 cd04887 ACT_MalLac-Enz ACT_Mal 49.7 19 0.00048 16.2 4.2 58 274-332 6-63 (74)
260 COG2222 AgaS Predicted phospho 49.6 11 0.00029 17.7 1.9 13 146-158 43-55 (340)
261 PRK13007 dipeptidase; Reviewed 49.6 19 0.00048 16.2 5.1 99 47-166 7-107 (354)
262 PRK10622 pheA bifunctional cho 49.3 19 0.00049 16.2 4.0 167 146-334 191-366 (386)
263 COG0077 PheA Prephenate dehydr 49.3 17 0.00043 16.5 2.8 133 184-332 118-261 (279)
264 TIGR01584 citF citrate lyase, 48.3 12 0.00031 17.5 1.9 88 216-351 392-480 (496)
265 PRK08526 threonine dehydratase 48.1 20 0.00051 16.0 3.5 52 354-405 332-395 (403)
266 PRK12815 carB carbamoyl phosph 47.4 20 0.00052 16.0 7.5 16 286-301 582-597 (1068)
267 PRK00907 hypothetical protein; 46.6 17 0.00042 16.6 2.4 56 275-330 25-82 (92)
268 TIGR00119 acolac_sm acetolacta 46.6 21 0.00053 15.9 3.2 79 274-352 9-93 (205)
269 pfam05089 NAGLU Alpha-N-acetyl 46.4 21 0.00054 15.9 3.3 64 121-185 162-248 (672)
270 PRK04998 hypothetical protein; 44.7 22 0.00057 15.7 3.2 57 276-332 24-80 (88)
271 COG3414 SgaB Phosphotransferas 43.4 9.6 0.00024 18.2 0.8 73 282-370 20-92 (93)
272 PRK13010 purU formyltetrahydro 42.9 24 0.00061 15.5 4.3 11 337-347 277-287 (289)
273 PRK07869 amidase; Provisional 42.8 24 0.0006 15.5 2.7 26 148-175 152-178 (467)
274 PRK06915 acetylornithine deace 42.4 24 0.00061 15.5 7.1 40 48-94 17-56 (422)
275 PRK08588 succinyl-diaminopimel 41.6 25 0.00063 15.4 4.8 96 48-161 2-107 (378)
276 TIGR02441 fa_ox_alpha_mit fatt 41.5 8.3 0.00021 18.6 0.2 192 146-360 488-692 (740)
277 KOG1384 consensus 41.3 13 0.00033 17.3 1.2 114 34-176 7-147 (348)
278 TIGR03526 selenium_YgeY putati 41.0 25 0.00065 15.3 5.6 97 48-165 13-119 (395)
279 TIGR02399 salt_tol_Pase glucos 40.5 23 0.00057 15.7 2.3 23 144-166 305-327 (401)
280 TIGR00853 pts-lac PTS system, 38.0 28 0.00072 15.0 4.0 68 35-104 48-133 (142)
281 KOG2567 consensus 37.4 29 0.00073 15.0 2.5 43 13-55 23-65 (179)
282 COG0499 SAM1 S-adenosylhomocys 36.8 11 0.00028 17.8 0.3 102 90-231 171-272 (420)
283 TIGR00631 uvrb excinuclease AB 36.3 30 0.00076 14.9 4.4 16 281-296 460-475 (667)
284 cd04925 ACT_ACR_2 ACT domain-c 36.3 30 0.00076 14.8 5.9 22 275-296 8-29 (74)
285 pfam07755 DUF1611 Protein of u 35.8 28 0.00072 15.0 2.2 42 155-196 129-173 (302)
286 PRK05443 polyphosphate kinase; 35.8 3.4 8.8E-05 21.2 -2.4 70 110-191 405-488 (692)
287 COG3439 Uncharacterized conser 34.5 32 0.00081 14.7 4.4 55 189-248 13-77 (137)
288 TIGR01769 GGGP geranylgeranylg 34.4 32 0.00081 14.7 3.4 43 187-229 129-189 (212)
289 TIGR03320 ygeY M20/DapE family 33.6 33 0.00084 14.6 5.8 97 47-164 12-118 (395)
290 COG4669 EscJ Type III secretor 33.2 33 0.00085 14.5 5.6 19 79-97 34-52 (246)
291 TIGR00936 ahcY adenosylhomocys 33.0 18 0.00045 16.4 0.8 105 85-231 165-274 (422)
292 PRK12389 glutamate-1-semialdeh 31.8 35 0.0009 14.4 6.1 49 359-407 378-426 (429)
293 PRK03298 hypothetical protein; 31.1 27 0.0007 15.1 1.5 20 358-377 187-206 (224)
294 PRK07906 hypothetical protein; 30.6 37 0.00094 14.2 4.1 111 45-166 7-127 (437)
295 TIGR01367 pyrE_Therm orotate p 30.5 37 0.00094 14.2 4.7 77 142-226 118-199 (205)
296 COG1242 Predicted Fe-S oxidore 30.4 22 0.00057 15.7 1.0 24 129-155 25-48 (312)
297 TIGR03586 PseI pseudaminic aci 30.3 37 0.00095 14.2 2.2 44 154-204 204-247 (327)
298 pfam09967 DUF2201 Predicted me 28.3 30 0.00077 14.8 1.4 12 364-375 360-371 (412)
299 PRK05298 excinuclease ABC subu 28.2 26 0.00067 15.2 1.0 16 168-183 214-230 (657)
300 smart00460 TGc Transglutaminas 28.0 35 0.00088 14.4 1.6 22 78-99 13-34 (68)
301 PRK05301 pyrroloquinoline quin 27.8 41 0.001 13.9 6.2 74 15-98 48-126 (375)
302 COG0788 PurU Formyltetrahydrof 27.2 42 0.0011 13.9 3.0 12 336-347 273-284 (287)
303 PRK08762 molybdopterin biosynt 27.1 37 0.00094 14.2 1.6 19 78-96 71-90 (379)
304 TIGR02068 cya_phycin_syn cyano 26.9 30 0.00077 14.8 1.2 48 126-186 484-533 (876)
305 TIGR02103 pullul_strch alpha-1 26.7 41 0.001 13.9 1.8 35 169-203 673-714 (945)
306 TIGR02544 III_secr_YscJ type I 26.6 43 0.0011 13.8 6.0 18 311-328 63-80 (203)
307 TIGR01689 EcbF-BcbF capsule bi 26.5 43 0.0011 13.8 4.0 107 1-126 1-120 (126)
308 cd01527 RHOD_YgaP Member of th 26.5 35 0.00089 14.4 1.4 33 192-224 1-33 (99)
309 TIGR01212 TIGR01212 radical SA 26.2 42 0.0011 13.9 1.8 107 263-379 108-217 (307)
310 cd04468 S1_eIF5A S1_eIF5A: Euk 26.0 44 0.0011 13.7 3.7 10 345-354 52-61 (69)
311 COG0616 SppA Periplasmic serin 25.9 44 0.0011 13.7 2.5 73 214-303 120-192 (317)
312 PRK10550 tRNA-dihydrouridine s 25.7 45 0.0011 13.7 5.7 22 38-59 3-25 (312)
313 cd04900 ACT_UUR-like_1 ACT dom 25.2 45 0.0012 13.6 4.7 22 275-296 9-30 (73)
314 PRK04148 hypothetical protein; 25.1 46 0.0012 13.6 3.1 50 171-231 60-110 (135)
315 cd05126 Mth938 Mth938 domain. 25.1 46 0.0012 13.6 3.5 28 350-377 63-90 (117)
316 TIGR01003 PTS_HPr_family phosp 25.0 37 0.00095 14.2 1.3 33 375-407 50-83 (83)
317 PRK13946 shikimate kinase; Pro 25.0 29 0.00075 14.9 0.8 45 111-168 4-48 (195)
318 TIGR00706 SppA_dom signal pept 24.8 46 0.0012 13.6 2.9 80 9-97 55-137 (224)
319 pfam06394 Pepsin-I3 Pepsin inh 24.5 47 0.0012 13.5 1.8 50 177-229 22-71 (76)
320 pfam03686 UPF0146 Uncharacteri 24.5 47 0.0012 13.5 3.1 83 136-231 7-103 (127)
321 TIGR01702 CO_DH_cata carbon-mo 24.2 48 0.0012 13.5 2.7 94 74-173 216-328 (647)
322 TIGR00655 PurU formyltetrahydr 24.1 48 0.0012 13.5 3.0 22 275-296 8-29 (294)
323 cd04817 PA_VapT_like PA_VapT_l 23.9 42 0.0011 13.9 1.4 74 135-210 49-135 (139)
324 KOG2201 consensus 23.6 45 0.0011 13.7 1.5 15 194-208 219-233 (371)
325 TIGR00538 hemN oxygen-independ 23.6 34 0.00087 14.4 0.9 29 17-47 86-114 (462)
326 TIGR01268 Phe4hydrox_tetr phen 23.1 50 0.0013 13.3 3.7 51 132-188 229-279 (445)
327 cd00758 MoCF_BD MoCF_BD: molyb 23.1 50 0.0013 13.3 3.9 67 76-165 19-85 (133)
328 PRK08554 peptidase; Reviewed 23.0 50 0.0013 13.3 3.5 79 76-164 28-113 (438)
329 PRK05476 S-adenosyl-L-homocyst 22.9 29 0.00075 14.9 0.5 71 90-176 170-240 (427)
330 TIGR01825 gly_Cac_T_rel pyrido 22.9 16 0.00041 16.7 -0.9 203 154-403 153-383 (392)
331 cd00401 AdoHcyase S-adenosyl-L 22.7 28 0.00071 15.1 0.3 71 90-176 164-234 (413)
332 TIGR00441 gmhA phosphoheptose 22.5 49 0.0012 13.4 1.6 39 252-292 67-108 (186)
333 PRK06837 acetylornithine deace 22.2 52 0.0013 13.2 6.8 39 48-93 20-58 (427)
334 PRK13004 peptidase; Reviewed 22.2 52 0.0013 13.2 5.3 95 48-163 15-119 (397)
335 pfam06929 Rotavirus_VP3 Rotavi 22.0 39 0.001 14.0 1.0 68 83-157 54-136 (684)
336 pfam05221 AdoHcyase S-adenosyl 21.9 25 0.00062 15.4 -0.1 71 90-176 172-242 (430)
337 TIGR02726 phenyl_P_delta pheny 21.8 30 0.00076 14.9 0.3 28 173-201 12-39 (169)
338 TIGR00458 aspS_arch aspartyl-t 21.6 47 0.0012 13.5 1.3 29 190-218 303-332 (466)
339 pfam11111 CENP-M Centromere pr 21.3 54 0.0014 13.1 3.5 11 359-369 160-170 (176)
340 COG0069 GltB Glutamate synthas 20.8 36 0.00093 14.3 0.6 13 318-330 288-300 (485)
341 COG4586 ABC-type uncharacteriz 20.8 29 0.00075 14.9 0.1 15 134-148 53-67 (325)
342 TIGR01229 rocF_arginase argina 20.8 55 0.0014 13.0 1.8 23 17-40 83-105 (337)
343 TIGR02475 CobW cobalamin biosy 20.7 41 0.001 13.9 0.9 42 319-365 271-313 (349)
344 KOG0203 consensus 20.7 56 0.0014 13.0 2.0 32 344-383 704-736 (1019)
345 PRK07522 acetylornithine deace 20.6 56 0.0014 13.0 1.6 38 51-95 8-46 (387)
346 PRK04247 hypothetical protein; 20.6 56 0.0014 13.0 2.1 25 356-380 210-234 (250)
347 TIGR01343 hacA_fam homoaconita 20.5 56 0.0014 13.0 2.9 92 131-224 109-240 (432)
348 COG4152 ABC-type uncharacteriz 20.4 35 0.00089 14.4 0.4 63 133-206 30-96 (300)
349 cd04895 ACT_ACR_1 ACT domain-c 20.2 57 0.0015 13.0 4.3 22 275-296 9-30 (72)
No 1
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=100.00 E-value=0 Score=907.07 Aligned_cols=403 Identities=45% Similarity=0.675 Sum_probs=379.0
Q ss_pred CCEEEEEECCCCCCCH--HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----------------
Q ss_conf 9669996085845888--999999999999996799889998068730489999999861489-----------------
Q gi|254780873|r 1 MARIVMKFGGTSVANI--DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID----------------- 61 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~--~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~----------------- 61 (411)
|.+||+|||||||++. |+|+++|++|.+..++|++++||||||+|+||.|++++++....+
T Consensus 1 m~~iV~KFGGTSVg~~PverI~~~A~~v~~~~~~g~~vvVVVSA~~g~Td~Lv~~~~~~~~~~~~~~~~~~~~~Ir~~~~ 80 (504)
T TIGR00657 1 MMLIVQKFGGTSVGNAPVERIRRVAKIVLKEKEKGNQVVVVVSAMAGVTDALVELAEKVSPGPSAAQEKEFLEKIREKHL 80 (504)
T ss_pred CCEEEEEECCEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCC
T ss_conf 97479973675766732378999999888875358973899973775336899999860464433036799999998400
Q ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCC
Q ss_conf ----------------------------------------98899999983129999999999984399--863567332
Q gi|254780873|r 62 ----------------------------------------NARERDVVISTGEQVSSGLMVLALQSLGI--QAISLQGWQ 99 (411)
Q Consensus 62 ----------------------------------------~~~~~d~i~s~GE~~s~~l~a~~l~~~G~--~a~~l~~~~ 99 (411)
++|++|+|+|+||++|+.||+++|+++|+ +++++.+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~e~~~~~~~L~~~~~LGe~~~~~~D~ilS~GE~~S~~l~~~~l~~~G~K~~~~~l~~~~ 160 (504)
T TIGR00657 81 EILERLIIPQAIAEKLKRLLDAELVLLKKVLLGISYLGEVTPREMDRILSVGERLSIALLSAALEELGVKAKAVSLTGAQ 160 (504)
T ss_pred CHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 04777407733689999999988999999999878734688687441312035888999999997457852012211474
Q ss_pred CCCCCCCCCCCCC-----CCCCCCCCHHHHHHHC-CEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHC
Q ss_conf 4551213355200-----0123621003343106-805860343335568424430686242899999884734556534
Q gi|254780873|r 100 IPIMTDSLHGMAR-----ICRVDEKKIVTHLKKK-QVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYT 173 (411)
Q Consensus 100 ~~i~t~~~~~~a~-----~~~~~~~~l~~~l~~~-~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~t 173 (411)
++|+||++|++|+ +....+++|..+|+++ .||||+||+|.|++|++||||||||||||++||+||+||+|+|||
T Consensus 161 ~~I~T~~~~~~A~p~~~~~~~~~~~rL~~~L~~g~~ipvvaGF~G~~~~g~~TtLGRGGSD~tA~llA~aL~Ad~~~IyT 240 (504)
T TIGR00657 161 AGILTDSNFGRARPDLAVIIEILTERLEPLLEEGDIIPVVAGFQGATEKGEITTLGRGGSDYTAALLAAALKADECEIYT 240 (504)
T ss_pred CCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 54554476676412024677766999999984698799984004105775079830680689999999861996899987
Q ss_pred CHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCCCCCC--
Q ss_conf 614402458421234411056799999998840311013788764331-38526761123777776543545454210--
Q gi|254780873|r 174 DVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAML-YKMCLFVRSSFEDHGQQEQLGTLICSGED-- 250 (411)
Q Consensus 174 dV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~-~~ipi~i~ntf~~~~~~~~~GT~I~~~~~-- 250 (411)
|||||||+|||+||+||+|++|||+||+||||||||||||||++|+++ ++|||+|+|||| |+.+||+|.++.+
T Consensus 241 DV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAKVLHPr~~ep~~~~~~ip~~v~st~~----~~a~GT~I~~~~~~~ 316 (504)
T TIGR00657 241 DVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRDYKIPIVVKSTFN----PEAPGTLIVASSKAK 316 (504)
T ss_pred CCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCEEEECCCC----CCCCCEEECCCCCCC
T ss_conf 2795032788637665204544878999998503165327889998467995189960778----899966871774457
Q ss_pred -----CCCCCCCCCCCCCCCCCHHCCCCCCCC---CCCCCHHHHHHHHCC----CCEECCC----CCCC--CCCCCCCCE
Q ss_conf -----122231011123466200012775000---484100014554128----5011123----4432--222333101
Q gi|254780873|r 251 -----IMEKKVITGIAYTKDEAQISLRRLRDH---PGISASIFSPLAEAH----INIDMII----QNVS--EDGQYVDIT 312 (411)
Q Consensus 251 -----~~~~~~Vk~Is~~~~i~~Iti~~~~~~---~g~~a~If~~La~~~----I~VdmI~----qs~s--~~~~~~~Is 312 (411)
.++.+.+|+|+..++++++++.+.... +|++++||..|++++ |||+||+ |+.+ +.+ .++|+
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~-~~di~ 395 (504)
T TIGR00657 317 KGESESMEEPIVKGISLDKNQARVTVSGLGMKGSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETS-KTDIS 395 (504)
T ss_pred CCCCCCCCCCCEEEEEECCCEEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCC-CEEEE
T ss_conf 51012266630234411366168998522678751027889999986237942632134675303556764015-30599
Q ss_pred EECCHHH--HHHHHHHH---------HHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE-
Q ss_conf 2123024--77668878---------98886059615897489169999667866785579999999986798299997-
Q gi|254780873|r 313 FTTPSSS--LEKALAVL---------SDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT- 380 (411)
Q Consensus 313 f~i~~~d--~~~~~~~L---------~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is- 380 (411)
|+++.++ ++++..++ +.........++.+++++|+||+||.||+++||+++++|.+|+++||||.||+
T Consensus 396 f~v~~~~i~~~~a~~~l~~~f~~~~l~~~~~~~~~~~~~~~~~~a~vS~vG~gm~~~~G~a~~~f~~L~~~~~NI~misQ 475 (504)
T TIGR00657 396 FTVDKEDIEADQAKELLKKEFLQTLLKSELNLSALSSVEVEKKLAKVSIVGAGMKSAPGVAAKIFEALAQNGINIEMISQ 475 (504)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEEEECCCHHCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 99625357768999999887887546688731563116770664389987610220565788999887426896899971
Q ss_pred -ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf -0784899997088999999999987097
Q gi|254780873|r 381 -TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 381 -sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+||++|||||+++|.++|++.||+.|++
T Consensus 476 G~SE~~iS~vv~~~d~~~av~~LH~~~~~ 504 (504)
T TIGR00657 476 GTSEIKISFVVDEKDAEKAVRALHEAFFE 504 (504)
T ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 68860799997162478999999998449
No 2
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=0 Score=892.85 Aligned_cols=403 Identities=45% Similarity=0.689 Sum_probs=385.7
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96699960858458889999999999999967998899980687304899999998614899889999998312999999
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGL 80 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l 80 (411)
|+++|+|||||||+|.+++++++++|.+..++|++++||||||||+||.|+++++++...+++||+|+++|+||++|+.|
T Consensus 1 M~lIV~KFGGTSVa~~e~i~~va~~I~~~~~~g~~vvVVVSAmg~~Td~L~~la~~i~~~~~~re~D~lls~GE~~S~~L 80 (594)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAEEISDNPPRREMDMLLSTGEQVSIAL 80 (594)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97499842876579899999999999999875899999974998729999999998747999899999997759999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCC--CEEEECCCCCCHHHH
Q ss_conf 999998439986356733245512133552000123621003343106805860343335568--424430686242899
Q gi|254780873|r 81 MVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDN--SVTTLGRGGSDTSAV 158 (411)
Q Consensus 81 ~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g--~~ttlgRGGSD~tA~ 158 (411)
|+.+|++.|+++.++++||++++||++|+++++.+.+++++.+.|+++++||+|||||.+.+| ++||||||||||||+
T Consensus 81 la~~L~~~G~~a~sl~~~q~gi~Td~~~~~A~i~~i~~~~i~~~l~~~~v~Vv~GFqGi~~~~~~eiTTLGRGGSD~TA~ 160 (594)
T PRK07431 81 LSMALQELGQPAISLTGAQVGIVTESEHGRARILEIKTERIQRHLDAGKVVVVAGFQGISLSSGLEITTLGRGGSDTSAV 160 (594)
T ss_pred HHHHHHHCCCCCEEEEHHHCCEECCCCCCCEECCCCCHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEECCCCCHHHHH
T ss_conf 99999968997199200016177679878673050689999999862991799600012579986156506887267999
Q ss_pred HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
Q ss_conf 99988473455653461440245842123441105679999999884031101378876433138526761123777776
Q gi|254780873|r 159 AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238 (411)
Q Consensus 159 ~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~ 238 (411)
++|++|+|++|+||||||||||||||+||+||+|++|||+||+||||||||||||||++|++++||||+|||||++
T Consensus 161 ~lAaaL~Ad~~eI~TDVdGV~TaDPriv~~Ar~i~~ISY~Em~ELa~~GAkVLhprsVe~A~k~~IPI~Vrstf~~---- 236 (594)
T PRK07431 161 ALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSD---- 236 (594)
T ss_pred HHHHHCCCCEEEEEECCCCEECCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCCC----
T ss_conf 9998648989999635672364699868886285712799999999758774567789999973996599667889----
Q ss_pred CCCCCCCCCCCCC-------CCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCC
Q ss_conf 5435454542101-------222310111234662000127750004841000145541285011123443222233310
Q gi|254780873|r 239 EQLGTLICSGEDI-------MEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDI 311 (411)
Q Consensus 239 ~~~GT~I~~~~~~-------~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~I 311 (411)
.+||+|+.+... ...+.|+||++.+|++.+++.++++.||++++||+.|++++||||||+|+.++.+. .++
T Consensus 237 -~~GT~I~~~~~~~~~~~~~e~~~~VtgIa~~~~~a~iti~gv~~~pG~aa~iF~~La~~~InVDmI~Q~~~~~~~-~di 314 (594)
T PRK07431 237 -APGTLLTSPPPRPRSLGGLELGKPVDGVELDEDQAVVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSTHEGNS-NDI 314 (594)
T ss_pred -CCCCEEECCCCCCCCCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC-CCE
T ss_conf -998578447777653211103687048898377469999368998658999999999739755899862367997-635
Q ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEEC
Q ss_conf 12123024776688789888605961589748916999966786678557999999998679829999707848999970
Q gi|254780873|r 312 TFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLID 391 (411)
Q Consensus 312 sf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~ 391 (411)
+|++++.+++++.++|++...+++...+..+.++++||+||.||+++||+++|+|++|+++||||.||++||++|||||+
T Consensus 315 sftv~~~dl~~a~~vl~~~~~~l~~~~v~~~~~iakVSvVG~GM~~~~GVAarmF~aLa~~gINI~mIStSEikIS~vI~ 394 (594)
T PRK07431 315 AFTVAEAELKKAEAVCEAILPSLGGELVTEDEAMAKLSISGAGIMGRPGIAAQMFDTLAEAGINIRMISTSEVKVSCVID 394 (594)
T ss_pred EEEECHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEC
T ss_conf 89714878999999999998763975478558716999957886778269999999998789987999825737999980
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 889999999999870977
Q gi|254780873|r 392 SAYTELAVRSLHSCYGLD 409 (411)
Q Consensus 392 ~~d~~~Av~~LH~~F~ld 409 (411)
++|.++|+++||++|.|+
T Consensus 395 ~~d~~kAv~alH~~F~Le 412 (594)
T PRK07431 395 AEDGDKAIRALSEAFELE 412 (594)
T ss_pred HHHHHHHHHHHHHHHCCC
T ss_conf 889999999999871877
No 3
>PRK06635 aspartate kinase; Reviewed
Probab=100.00 E-value=0 Score=867.45 Aligned_cols=402 Identities=58% Similarity=0.896 Sum_probs=389.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96699960858458889999999999999967998899980687304899999998614899889999998312999999
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGL 80 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l 80 (411)
|+++|+|||||||+|++++++++++|.+..++|++++||||||||+||.|+++++++...+++||+|.++|+||++|+.+
T Consensus 1 M~~iV~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~Li~la~~~~~~~~~~e~d~ils~GE~~S~~l 80 (402)
T PRK06635 1 MALIVQKFGGTSVGDVERIKNVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPAPDPRELDMLLSTGEQVSVAL 80 (402)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97799957850369999999999999878872999899964999878999999998607998799999998717999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 99999843998635673324551213355200012362100334310680586034333556842443068624289999
Q gi|254780873|r 81 MVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAI 160 (411)
Q Consensus 81 ~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~i 160 (411)
|+.+|+++|++|.++++||++|+||++|+++++.+.+.+++.+.++++.+||+|||+|.+++|++||||||||||||+++
T Consensus 81 ~a~~L~~~g~~a~~~~~~~~~i~td~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLgRGGSD~sA~~~ 160 (402)
T PRK06635 81 LAMALQSLGVKARSFTGWQAPIITDSAHGKARITDIDPDRIREALDEGKVVVVAGFQGVDEDGEITTLGRGGSDTTAVAL 160 (402)
T ss_pred HHHHHHHCCCCCEEECHHHCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCEEECCCCCEEEECCCCCHHHHHHH
T ss_conf 99999857998589147878553156545524114227889999846977997373122578966773588721899999
Q ss_pred HHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
Q ss_conf 98847345565346144024584212344110567999999988403110137887643313852676112377777654
Q gi|254780873|r 161 AAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 (411)
Q Consensus 161 a~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~ 240 (411)
|++|+|++|+||||||||||||||+||+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+| +
T Consensus 161 a~~l~A~~~~IwtDV~Gi~taDPr~V~~A~~i~~isy~Ea~ELa~~GAkVlHp~ti~pa~~~~Ipi~v~nTf~p----~- 235 (402)
T PRK06635 161 AAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVELAKKYNVPLRVRSSFSE----E- 235 (402)
T ss_pred HHHCCCCEEEEEECCCCEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCC----C-
T ss_conf 98607758999853563051587546777215725999999999769875678889999974980899856789----8-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHH
Q ss_conf 35454542101222310111234662000127750004841000145541285011123443222233310121230247
Q gi|254780873|r 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSL 320 (411)
Q Consensus 241 ~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~ 320 (411)
+||+|+......+++.||||+.++|+++|++.+|.+.+||++++|+.|++++||||||+|+.++.+ ..+++|+++.+|.
T Consensus 236 ~GT~I~~~~~~~~~~~V~gIa~~~~~~~i~~~~~~~~~G~~~~vf~~l~~~~i~vd~Isq~~s~~~-~~~is~~v~~~d~ 314 (402)
T PRK06635 236 PGTLITEEEEIMEQPVVTGIAFDKDEAKVTVVGVPDKPGIAAQIFGPLADANINVDMIVQNVSEDG-KTDLTFTVPRSDL 314 (402)
T ss_pred CCEEEECCCCCCCCCCEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCC-CEEEEEEECHHHH
T ss_conf 973995388644344301342132144310104788666899998888743536789997127899-6018999638889
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHH
Q ss_conf 76688789888605961589748916999966786678557999999998679829999707848999970889999999
Q gi|254780873|r 321 EKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVR 400 (411)
Q Consensus 321 ~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~ 400 (411)
+++.++|++++.+..+..+.+++++++||+||+||+++||+++|+|++|++++|||+||++||+||||||+++|.++|++
T Consensus 315 ~~~~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~gia~r~f~aL~~~~InI~~IssSe~nIs~vV~~~d~~~Av~ 394 (402)
T PRK06635 315 EKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVR 394 (402)
T ss_pred HHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHH
T ss_conf 99999999999746986389859969999988873568239999999999789976999705687999981899999999
Q ss_pred HHHHHCCC
Q ss_conf 99987097
Q gi|254780873|r 401 SLHSCYGL 408 (411)
Q Consensus 401 ~LH~~F~l 408 (411)
+||++|+|
T Consensus 395 aLH~~F~L 402 (402)
T PRK06635 395 ALHEAFGL 402 (402)
T ss_pred HHHHHCCC
T ss_conf 99986189
No 4
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=100.00 E-value=0 Score=843.39 Aligned_cols=398 Identities=32% Similarity=0.494 Sum_probs=361.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-------------------
Q ss_conf 9669996085845888999999999999996799889998068730489999999861489-------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID------------------- 61 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~------------------- 61 (411)
|+ |+|||||||+|++++++++++|.+..++ .+++||||||||+||.|+++++.+...+
T Consensus 1 Mk--V~KFGGTSva~ae~i~~Va~II~~~~~~-~~vvVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~l~~i~~~h~~~~~~ 77 (817)
T PRK09436 1 MK--VLKFGGTSLANAERFLRVADIIESNARQ-EQVAVVLSAPAKVTNHLVAMAEKAAGGQDYLPNLSDAERIFAELLRG 77 (817)
T ss_pred CE--EEEECCCCCCCHHHHHHHHHHHHHHCCC-CCEEEEECCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 97--8875715678999999999999753438-99899983999868999999998854886789999999999999999
Q ss_pred -------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
Q ss_conf -------------------------------------9889999998312999999999998439986356733245512
Q gi|254780873|r 62 -------------------------------------NARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMT 104 (411)
Q Consensus 62 -------------------------------------~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t 104 (411)
+++.+|.++|+||+||+.||+++|+++|+++.++|++++ |+|
T Consensus 78 l~~~~~~~~~~~l~~~l~~~~~~L~~~l~gi~ll~e~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lDar~~-i~t 156 (817)
T PRK09436 78 LAAALPGFDLAQLKAKLDQEFAELKDLLHGISLLGECPDKVNAAIISRGERLSIAIMSAVLEARGHDATVIDPREL-LLA 156 (817)
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEE
T ss_conf 8643342025789999999999999998766553038857778997586999999999999968998099774890-783
Q ss_pred CCCCCCCCCC-CCCCCCHHHHH-HHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECC
Q ss_conf 1335520001-23621003343-106805860343335568424430686242899999884734556534614402458
Q gi|254780873|r 105 DSLHGMARIC-RVDEKKIVTHL-KKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTD 182 (411)
Q Consensus 105 ~~~~~~a~~~-~~~~~~l~~~l-~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taD 182 (411)
++.|++++++ +.+..++.+.+ ..+.+||+|||+|.+++|++||||||||||||+++|++|+|++|+||||||||||||
T Consensus 157 d~~~~~a~vd~~~s~~~i~~~~~~~~~i~Vv~GFig~~~~G~~tTLGRGGSDyTAailAa~L~A~~~eIwTDVdGi~TaD 236 (817)
T PRK09436 157 DGHYLESTVDIAESTRRIAASFIPADHVVLMPGFTAGNEKGELVTLGRNGSDYSAAVLAACLDADCCEIWTDVDGVYTAD 236 (817)
T ss_pred CCCCCCEEECHHHHHHHHHHHHCCCCCEEEECCEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEECC
T ss_conf 58777655666764999998634579789934711207999877706986178999999971986699984677327069
Q ss_pred CCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 42123441105679999999884031101378876433138526761123777776543545454210122231011123
Q gi|254780873|r 183 PRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAY 262 (411)
Q Consensus 183 Pr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~ 262 (411)
||+||+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+ |+.+||+|+++. ..++.+||||+.
T Consensus 237 Pr~V~~A~~I~~lSY~EA~ELA~fGAkVLHP~Ti~P~~~~~IPi~IkNTf~----P~~~GT~I~~~~-~~~~~~VkgIs~ 311 (817)
T PRK09436 237 PRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFN----PQAPGTLIGAES-DEDSLPVKGISN 311 (817)
T ss_pred CCCCCCCEEEEEECHHHHHHHHHCCCCEECHHHHHHHHHCCCEEEEECCCC----CCCCCEEEECCC-CCCCCCEEEEEE
T ss_conf 987766657516369999999847995026677889987496599965778----899974884257-677884489994
Q ss_pred CCCCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH----HCCC
Q ss_conf 4662000127--750004841000145541285011123443222233310121230247766887898886----0596
Q gi|254780873|r 263 TKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE----NIGY 336 (411)
Q Consensus 263 ~~~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~----~~~~ 336 (411)
.+|+++++++ +|.+.|||++|||+.|++++|||+||+|++||+ +|+|+++..+.+++..+|++... ...+
T Consensus 312 ~~~iali~i~g~gm~g~~G~a~riF~~L~~~~InV~lIsQ~sSE~----sIs~~v~~~d~~~a~~~L~~ef~~Ei~~~~i 387 (817)
T PRK09436 312 LNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEY----SISFCVPQSDAAKARRALEEEFALELKEGLL 387 (817)
T ss_pred CCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 287799999638878851089999999998699779985268776----0567754889999999999999988740874
Q ss_pred CEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 15897489169999667866785579999999986798299997--0784899997088999999999987097779
Q gi|254780873|r 337 DVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 337 ~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
++|.+++++|+||+||+||++++|+++|+|++|++++|||+||+ +||+|||+||+++|.++|+++||++||+..|
T Consensus 388 ~~i~~~~~laivavVG~gM~~~~Gva~k~F~aL~~~~INI~aIaQGsSE~nIS~VI~~~d~~kAl~alH~~FF~~~~ 464 (817)
T PRK09436 388 EPLEVRENLAIISVVGDGMRTHPGVAAKFFSALARANINIIAIAQGSSERSISVVIDSDDATKALRACHQSFFLSDQ 464 (817)
T ss_pred CCEEEECCCEEEEEECHHHCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCC
T ss_conf 51799369349986130010495689999999987897389985488755699999230179999999999846765
No 5
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=100.00 E-value=0 Score=840.14 Aligned_cols=399 Identities=44% Similarity=0.634 Sum_probs=375.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH-------------------HHHCCC
Q ss_conf 9669996085845888999999999999996799889998068730489999999-------------------861489
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR-------------------QVTSID 61 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~-------------------~~~~~~ 61 (411)
|+++|+|||||||+|++++++++++|++..++|++++||+|||||+||.|+++++ ++...+
T Consensus 1 m~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~ 80 (447)
T COG0527 1 MRLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDP 80 (447)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC
T ss_conf 95089986875538889999999999854633971899978987745899999863314452057888999999874151
Q ss_pred --------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------988999999831299999999999843998635673324551213355200012
Q gi|254780873|r 62 --------------------------NARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 (411)
Q Consensus 62 --------------------------~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~ 115 (411)
+++++|+++|+||++|+.||+++|+++|++|+++++||+++.|+++|+++++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~lls~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~ 160 (447)
T COG0527 81 FIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILD 160 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCEEEECHHHCEEEECCCCCCCCCCH
T ss_conf 04566766666666766666641479878999998505488999999999967996599755884255357666553103
Q ss_pred CCCCC-HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECC
Q ss_conf 36210-03343106805860343335568424430686242899999884734556534614402458421234411056
Q gi|254780873|r 116 VDEKK-IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194 (411)
Q Consensus 116 ~~~~~-l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~ 194 (411)
..+.+ +...+.++++||+|||+|.+++|++||||||||||||+++|++|+|++|+||||||||||||||+||+||+|++
T Consensus 161 ~~~~~~l~~~~~~~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~ 240 (447)
T COG0527 161 EDSERRLLRLLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPE 240 (447)
T ss_pred HHHHHHHHHHHCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCC
T ss_conf 55666678874469779951866516999889847984788999999971998899998788775689977886457684
Q ss_pred CCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCC-
Q ss_conf 7999999988403110137887643313852676112377777654354545421012223101112346620001277-
Q gi|254780873|r 195 ISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRR- 273 (411)
Q Consensus 195 lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~- 273 (411)
|||+||+||||||||||||||++|+++++||++|+|||+| +.+||+|+++.+..+ +.++||+..+++++|++++
T Consensus 241 isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p----~~~GTlI~~~~~~~~-~~v~gIa~~~~~~~i~v~~~ 315 (447)
T COG0527 241 ISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNP----DAPGTLITAETESDE-PVVKGIALDDNVALITVSGP 315 (447)
T ss_pred CCHHHHHHHHHCCCHHCCHHHHHHHHHCCCCEEEEECCCC----CCCCEEEECCCCCCC-CCEEEEECCCCEEEEEEECC
T ss_conf 6999999999778521499888899876991899716999----999539956776767-72488970798589999714
Q ss_pred -CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEEC
Q ss_conf -5000484100014554128501112344322223331012123024776688789888605961589748916999966
Q gi|254780873|r 274 -LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIG 352 (411)
Q Consensus 274 -~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG 352 (411)
|.+.+||+++||..|++++|++|||+|+.++. +++|++++.+..++...|++....... ++.+++++|+||+||
T Consensus 316 ~~~~~~g~~a~if~~l~~~~i~v~~I~q~~~~~----~i~~~v~~~~~~~a~~~l~~~~~~~~~-~v~~~~~~a~vsiVG 390 (447)
T COG0527 316 GMNGMVGFAARVFGILAEAGINVDLITQSISEV----SISFTVPESDAPRALRALLEEKLELLA-EVEVEEGLALVSIVG 390 (447)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC----EEEEEECHHHHHHHHHHHHHHHHHHCC-EEEEECCEEEEEEEC
T ss_conf 766652479999999997599679999236787----599997344578999999998863146-078417855999974
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 786678557999999998679829999707848999970889999999999870977
Q gi|254780873|r 353 IGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 (411)
Q Consensus 353 ~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ld 409 (411)
.||+++||+++|+|++|++++|||.||++||+||||||+++|.++|+++||++||++
T Consensus 391 ~gm~~~~gvaa~~f~aL~~~~ini~~issSe~~Is~vV~~~~~~~av~~LH~~~~~~ 447 (447)
T COG0527 391 AGMRSNPGVAARIFQALAEENINIIMISSSEISISFVVDEKDAEKAVRALHEAFFLG 447 (447)
T ss_pred CCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHHHHHCC
T ss_conf 351359678999999997479957999747856999984288999999999997259
No 6
>PRK06291 aspartate kinase; Provisional
Probab=100.00 E-value=0 Score=834.84 Aligned_cols=400 Identities=40% Similarity=0.558 Sum_probs=369.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
++|+|||||||+|++++++++++|++..+++++++||||||||+||.|+++++++...
T Consensus 2 ~iV~KFGGTSva~~~~i~~v~~iI~~~~~~~~~~vVVvSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~ 81 (466)
T PRK06291 2 RLVMKFGGTSVGDGERIRHVAKLVKKYREEGNEVVVVVSAMTGVTDRLLEIAEQALDVGDIAKVNDFIAELRERHEIAIE 81 (466)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 78997384237989999999999876776589899996799997899999999987477878899999999999999999
Q ss_pred -----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------------------------998899999983129999999999984399863567332455121
Q gi|254780873|r 61 -----------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTD 105 (411)
Q Consensus 61 -----------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~ 105 (411)
.+++++|+++|+||++|+.+|+.+|+++|+++.++++++++++||
T Consensus 82 ~l~~~~~~~~e~~~~l~~~~~~l~~~l~~~~~~~~~s~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~~i~t~ 161 (466)
T PRK06291 82 EAIEAPDIRVEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIPSLHLTGGEAGIITD 161 (466)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHCEEEEC
T ss_conf 85027556899999999999999998766655301681778899868999999999999996799849988688917714
Q ss_pred CCCCCCCCCCCCCCCHHH----HHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEEC
Q ss_conf 335520001236210033----4310680586034333556842443068624289999988473455653461440245
Q gi|254780873|r 106 SLHGMARICRVDEKKIVT----HLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181 (411)
Q Consensus 106 ~~~~~a~~~~~~~~~l~~----~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~ta 181 (411)
++|+++++.+....++.+ .++.+.+||+|||+|.+.+|++||||||||||||+++|++|+|++|+|||||||||||
T Consensus 162 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~vv~GFig~~~~G~~ttLGRGGSD~TAa~lA~~l~A~~~~IwTDV~Gi~ta 241 (466)
T PRK06291 162 DNFGNARPLPKTYERIKERLGPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTA 241 (466)
T ss_pred CCCCCEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCEEEC
T ss_conf 78765115533068899988777404836897361048899977870799618999999995788699994056734716
Q ss_pred CCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 84212344110567999999988403110137887643313852676112377777654354545421012223101112
Q gi|254780873|r 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIA 261 (411)
Q Consensus 182 DPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is 261 (411)
|||+||+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+ |+.+||+|+.+.+ .+++.||+|+
T Consensus 242 DPriV~~A~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~IPi~I~nt~~----P~~~GT~I~~~~~-~~~~~Vk~Ia 316 (466)
T PRK06291 242 DPRIVPEARTIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFN----PEFPGTLITSESE-QSNGVVKAVT 316 (466)
T ss_pred CCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCC----CCCCCEEEECCCC-CCCCCEEEEE
T ss_conf 9987877754374599999999975876456778999998099389982689----8999728964776-6755221010
Q ss_pred CCCCCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 34662000127--7500048410001455412850111234432222333101212302477668878988860596158
Q gi|254780873|r 262 YTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVI 339 (411)
Q Consensus 262 ~~~~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I 339 (411)
.++++++|++. +|.+.+||++++|+.|++++|+|+||+|++++ .+|+|++++.+++++..+|++..+......+
T Consensus 317 ~~~~i~~i~i~~~~m~~~~g~~~~if~~l~~~~i~v~~i~q~ss~----~~is~~v~~~~~~~~~~~l~~~~~~~~~~~v 392 (466)
T PRK06291 317 LIKNVALINISGAGMVGVPGVAARIFSALAREGVNVIMISQGSSE----SNISLVIDEADVEKALKALRREFNRGIVRDI 392 (466)
T ss_pred CCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCC----CEEEEEECHHHHHHHHHHHHHHHHHCCCCCE
T ss_conf 357737999715765530006899989998739808999804887----6058996188899999999998764366727
Q ss_pred EEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 97489169999667866785579999999986798299997--0784899997088999999999987097779
Q gi|254780873|r 340 QHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 340 ~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
++.+++|+||+||.||+++||+++|+|++|++++|||+||+ +||+||||||+++|.++|+++||++|+|+.|
T Consensus 393 ~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~~~InI~~IsqgsSe~nIs~vV~~~d~~~Av~~LH~~F~L~~~ 466 (466)
T PRK06291 393 TFDKDVCVVAVVGAGMAGTPGVAGRLFGALGESGINIKMISQGSSEVNISFVVKEEDGERAVKVLHDEFELGNE 466 (466)
T ss_pred EECCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEEEHHHHHHHHHHHHHHHCCCCC
T ss_conf 97389589999896613482199999999986899889974588877799998089999999999998189999
No 7
>PRK08210 aspartate kinase I; Reviewed
Probab=100.00 E-value=0 Score=830.74 Aligned_cols=395 Identities=38% Similarity=0.539 Sum_probs=372.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 966999608584588899999999999999679988999806873-----048999999986148998899999983129
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSG-----ETDRLAELCRQVTSIDNARERDVVISTGEQ 75 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g-----~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~ 75 (411)
||++|+|||||||+|++++++++++|.+..++|++++|||||||+ +||.|++++++.....++|++|.++|+||+
T Consensus 1 Mk~iV~KFGGtSv~~~~~i~~v~~ii~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~l~s~GE~ 80 (405)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMVVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSDISKREQDLLMSCGEI 80 (405)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 98798816850269999999999999878866998899979989899811499999999865025987889999877589
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 99999999998439986356733245512133552000123621003343106805860343335568424430686242
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDT 155 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~ 155 (411)
+|+.||+.+|+++|++|.+++++|++++||++|++|++...+.+++.+.++++.+||+|||||.+.+|++||||||||||
T Consensus 81 ~S~~l~a~~L~~~g~~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~vv~GF~g~~~~g~~ttLGRGGSD~ 160 (405)
T PRK08210 81 ISSVVFSNMLNEAGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGATENGDITTLGRGGSDT 160 (405)
T ss_pred HHHHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCCEEECCCHHHHHHHHHCCCEEEECCCEEECCCCCEEEECCCCCCH
T ss_conf 99999999997479986797741584784675455300014579999987459859961746546899566625887327
Q ss_pred HHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCC
Q ss_conf 89999988473455653461440245842123441105679999999884031101378876433138526761123777
Q gi|254780873|r 156 SAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDH 235 (411)
Q Consensus 156 tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~ 235 (411)
||+++|++|+|++|+||||||||||||||+||+|++|++|||+||+||||||||||||+|++|+++++||++|||||++
T Consensus 161 TA~~la~~l~A~~~~iwtDV~Gv~taDPr~v~~a~~i~~lsy~Ea~ELa~~GakVlhp~tv~pa~~~~Ipi~I~nT~~~- 239 (405)
T PRK08210 161 TAAALGVALKAEYIDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD- 239 (405)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC-
T ss_conf 9999998639988999856776563799827665111624999999999779863688999999973983999736899-
Q ss_pred CCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCC
Q ss_conf 776543545454210-----122231011123466200012775000484100014554128501112344322223331
Q gi|254780873|r 236 GQQEQLGTLICSGED-----IMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVD 310 (411)
Q Consensus 236 ~~~~~~GT~I~~~~~-----~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~ 310 (411)
.+||+|++..+ ..+.+.|+||+++++++++++.+..+.+|+.+++|+.|++++||||||+++.+ +
T Consensus 240 ----~~GT~I~~~~~~~~~~~~~~~~VtgIa~~~~i~~i~i~~~~~~~g~~~~if~~la~~~IsVd~Is~s~~------~ 309 (405)
T PRK08210 240 ----SKGTLITSYGDATKGSDVEERLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAEAGISVDLINIFPT------E 309 (405)
T ss_pred ----CCCCEEECCCCCCCCCCCCCCCEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEEECCC------C
T ss_conf ----998679346765445543334248898028879999965899616899999999984981799993347------6
Q ss_pred CEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEE
Q ss_conf 01212302477668878988860596158974891699996678667855799999999867982999970784899997
Q gi|254780873|r 311 ITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLI 390 (411)
Q Consensus 311 Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV 390 (411)
++|++++++.+++..+|+++. . .+++++++++||+||.||+++||+++|+|++|+++|||+.++++||+||||||
T Consensus 310 i~ftv~~~d~~~~~~il~el~----~-~~~v~~~~a~VSvVG~gM~~~~Gvaarif~aL~~~~InIi~~~sSe~nIS~vV 384 (405)
T PRK08210 310 VVFTVSDEDSEKAKEILEELG----L-KPSVTENCAKVSIVGAGMRGVPGVMAKIVTALSEEGIEILQSADSHTTIWCLV 384 (405)
T ss_pred EEEEECHHHHHHHHHHHHHCC----C-CEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEE
T ss_conf 799975899999999999748----9-65996795999998876135823999999999868986899835686899998
Q ss_pred CHHHHHHHHHHHHHHCCCCCC
Q ss_conf 088999999999987097779
Q gi|254780873|r 391 DSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 391 ~~~d~~~Av~~LH~~F~ld~~ 411 (411)
+++|.++|+++||++|+||.|
T Consensus 385 ~~~d~~~Av~aLH~~F~L~~~ 405 (405)
T PRK08210 385 KEEDLEKAVNALHDAFELSKK 405 (405)
T ss_pred EHHHHHHHHHHHHHHHCCCCC
T ss_conf 189999999999998289989
No 8
>PRK09034 aspartate kinase; Reviewed
Probab=100.00 E-value=0 Score=808.84 Aligned_cols=392 Identities=28% Similarity=0.370 Sum_probs=358.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-------CHHHHHHHHHHHHHCC----------------
Q ss_conf 99960858458889999999999999967998899980687-------3048999999986148----------------
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMS-------GETDRLAELCRQVTSI---------------- 60 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~-------g~Td~L~~l~~~~~~~---------------- 60 (411)
.|+|||||||+|++++++++++|+.. ..+.+||||||| |+||.|+++++.....
T Consensus 2 ~V~KFGGtSv~~~~~i~~v~~ii~~~---~~~~vVVVSA~G~~~~~~~~vTd~L~~~~~~~~~~~~~~~~~~~i~~~h~~ 78 (450)
T PRK09034 2 KVVKFGGSSLASAEQFKKVLNIVKSD---PERKIVVVSAPGKRFKEDTKVTDLLILYAEHVLNGEDYDDIFEAIIARYAE 78 (450)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 89987831389999999999999627---898399990798876775552699999999986487589999999999999
Q ss_pred ----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------------9988999999831299999999999843998635673324551213355200
Q gi|254780873|r 61 ----------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR 112 (411)
Q Consensus 61 ----------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~ 112 (411)
..+|++|+++|+||+||+.+|+.+|+++|++|.+++++|++++|+++|++++
T Consensus 79 i~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~~d~~~~~~~~~~~~~~a~ 158 (450)
T PRK09034 79 IADELGLKDDILEKIAEILEHLANLDKEENGYLLDAFKARGEDLNAKLIAAYLNYEGIDARYVSPKEAGIIVTDEPGGAQ 158 (450)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECHHHEEEEECCCCCCCE
T ss_conf 99873566779999999999998602457467787885188999999999999968997399873450278526777617
Q ss_pred CCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEE
Q ss_conf 01236210033431068058603433355684244306862428999998847345565346144024584212344110
Q gi|254780873|r 113 ICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLM 192 (411)
Q Consensus 113 ~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i 192 (411)
+.+....++.+.++.+.+||+|||||.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||+|++|
T Consensus 159 ~~~~~~~~l~~~~~~~~v~Vv~GFig~~~~G~~tTLGRGGSD~TAa~la~~l~A~~~~IwTDVdGi~taDPr~V~~A~~i 238 (450)
T PRK09034 159 ILPESYDKLKKLRDSDEKLVIPGFFGVTPDGQIKTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPNIVKNPKPI 238 (450)
T ss_pred ECHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCEEECCCCCCCCCCCC
T ss_conf 73741999998871798799832788469997776168834899999999719988999854673160698767876620
Q ss_pred CCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC
Q ss_conf 56799999998840311013788764331385267611237777765435454542101222310111234662000127
Q gi|254780873|r 193 KKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLR 272 (411)
Q Consensus 193 ~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~ 272 (411)
++|||+||+||||||||||||+|++|++++|||++|||||+ |+.+||+|.+........+||||++++++++|+++
T Consensus 239 ~~lsy~EA~ELa~~GAkVlHP~ti~p~~~~~IPi~I~nt~~----P~~~GT~I~~~~~~~~~~~V~gIa~~~~v~~i~i~ 314 (450)
T PRK09034 239 EEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNN----PEDPGTLIVHDKRFNPKNPITGIAGDKGFTVIYIS 314 (450)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCCCHHHCCCEEEEEEECCC----CCCCCEEEEECCCCCCCCCEEEEEECCCEEEEEEE
T ss_conf 52789999999975875457131452130654899972799----99996089627876666834788723866999994
Q ss_pred --CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHH--HHHHHHHHHHHHCCCCEEEEECCEEEE
Q ss_conf --7500048410001455412850111234432222333101212302477--668878988860596158974891699
Q gi|254780873|r 273 --RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLE--KALAVLSDNKENIGYDVIQHEDNLVKI 348 (411)
Q Consensus 273 --~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~--~~~~~L~~~~~~~~~~~I~~~~~~a~I 348 (411)
+|.+.+||+++||+.|++++||+|||+|+.+ +++|++++.+++ .+..+++++.+.+...++++++++|+|
T Consensus 315 ~~~m~~~~g~~~~if~~l~~~~isv~~i~ts~~------~is~~v~~~~~~~~~~~~~~~el~~~~~~~~i~~~~~~a~V 388 (450)
T PRK09034 315 KYLMNREVGFGRKILQILEDHNISYEHMPSGID------DLSIIIREKQLTNEKEDEILNEIKQELNPDELEIEHDLAII 388 (450)
T ss_pred CCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCC------EEEEEECHHHCCHHHHHHHHHHHHHHCCCCEEEEECCEEEE
T ss_conf 367677514899999999982994886523775------48999723330389999999999865597649980896899
Q ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 99667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 349 SAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 349 SvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
|+||+||+++||+++|+|++|++++|||+||+ +||+||||||+++|.++|+++||++||.
T Consensus 389 svVG~gm~~~~Gva~r~f~aL~~~~InI~~IsqgsSe~nIs~vV~~~d~~~Av~aLH~~Ffe 450 (450)
T PRK09034 389 MVVGEGMRKTVGVAAKITKALAEAKINIRMINQGSSEISIMFGVHNEDEEKAVKAIYNAFFK 450 (450)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 99787725793799999999997899879982278877799998589999999999998639
No 9
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=100.00 E-value=0 Score=809.64 Aligned_cols=394 Identities=22% Similarity=0.271 Sum_probs=347.5
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC---------------------
Q ss_conf 96699960858458889999999999999967998899980687304899999998614---------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS--------------------- 59 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~--------------------- 59 (411)
|++.|+|||||||+|+++|++|+++|.+..+. ..+||||||||+||.|+++++....
T Consensus 10 m~r~V~KFGGTSVa~ae~i~~Va~II~~~~~~--~~vVVVSA~ggvTd~Li~~~~~a~~~~~~~~~~~~~l~~~h~~li~ 87 (810)
T PRK09466 10 MGRQLHKFGGSSLADAKCYRRVAGILAEYSQP--DDLVVVSAAGKTTNQLIKWLKLSQTDRLSAHEVLQTLRRYQQDLIE 87 (810)
T ss_pred CCCEEECCCCCCCCCHHHHHHHHHHHHHCCCC--CCEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 22689751866568999999999999735789--9399984999981899999998753860578999999999999999
Q ss_pred ----------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------------8998899999983129999999999984399863567332455121335520
Q gi|254780873|r 60 ----------------------------IDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMA 111 (411)
Q Consensus 60 ----------------------------~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a 111 (411)
..+++++|.++|+||+||+.||+++|+++|+++.+++++++ +.+++ +..+
T Consensus 88 ~ll~~~~~~~l~~~l~~~l~~l~~~l~~~~~~~~~d~ils~GE~lSa~Lla~~L~~~Gi~a~~ldar~~-i~~d~-~~~~ 165 (810)
T PRK09466 88 GLLSAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVGHGEVWSARLLAALLNQQGLAAAWLDARSF-LRAER-AAQP 165 (810)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEECC-CCCC
T ss_conf 750623469999999999999999751568867876773360899999999999967998489567990-56167-8653
Q ss_pred CCCC-CCCCCHHHHHHH--CCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCC
Q ss_conf 0012-362100334310--6805860343335568424430686242899999884734556534614402458421234
Q gi|254780873|r 112 RICR-VDEKKIVTHLKK--KQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPK 188 (411)
Q Consensus 112 ~~~~-~~~~~l~~~l~~--~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~ 188 (411)
+++. ....++.+.++. +.+||+|||||.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||+
T Consensus 166 ~vd~~~s~~~l~~~l~~~~~~i~VvtGFig~~~~G~~tTLGRGGSD~SAailAaaL~A~~~eIwTDVdGV~TADPriV~~ 245 (810)
T PRK09466 166 QVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALADVERVTIWSDVAGVYSADPRKVKD 245 (810)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEECCEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCC
T ss_conf 11366659999999973689769982667746999778705887306999999980997799973567315369976756
Q ss_pred CCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 41105679999999884031101378876433138526761123777776543545454210122231011123466200
Q gi|254780873|r 189 AHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQ 268 (411)
Q Consensus 189 a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~ 268 (411)
|++|++|||+||+||||||||||||||++|+++++|||+|||||+ |+.+||+|.+..+ ....+++|+..+|+++
T Consensus 246 A~~I~~iSY~EA~ELA~fGAkVLHPrti~Pa~~~~IPI~IknTf~----Pe~~GTlI~~~~~--~~~~~k~It~i~~i~l 319 (810)
T PRK09466 246 ACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYT----PEQGSTRIERVLA--SGTGARIVTSLDDVCL 319 (810)
T ss_pred CEEECEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCC----CCCCCEEEEECCC--CCCCCEEEEEECCEEE
T ss_conf 511123459999999846998657678999986497499995457----8999659975456--6666506996233679
Q ss_pred HCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEE
Q ss_conf 0127--75000484100014554128501112344322223331012123024776688789888605961589748916
Q gi|254780873|r 269 ISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLV 346 (411)
Q Consensus 269 Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a 346 (411)
++++ +|.+.||+.++||+.|++++|+++||+|+.+++ +++|++..++.+++..++++... ...+..++++|
T Consensus 320 i~v~g~~m~~~~g~~~riF~~L~~~~I~vi~isq~sse~----si~~~~~~~~~~~a~~~l~~~~~---~~~i~~~~~la 392 (810)
T PRK09466 320 IEFQVPASQDFELAQKELDQLLKRAQLRPLAVGVHADRR----LLQLAYTSEVADSALKLLDDAAL---PGELRLREGLA 392 (810)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHCCCEEEEEEECCCCC----EEEEEEEHHHHHHHHHHHHHCCC---CCCEEEECCEE
T ss_conf 999825878830589999999997697088878606786----59999868899999999986045---67279718867
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99996678667855799999999867982999970784899997088999999999987097779
Q gi|254780873|r 347 KISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 347 ~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
+||+||+||+++||+++|+|++|++++||+.++++||+||||||+++|.++|+++||++||+..|
T Consensus 393 iVSiVG~gM~~~~GVAar~F~aLa~~nI~iiaqg~SEinIS~VI~~~d~~kAv~aLH~~fF~~~~ 457 (810)
T PRK09466 393 LVALVGAGVTRNPLHCHRFYQQLKGQPVEFLWQSEDGLSLVAVLRQGPTESLIQGLHQSLFRAEK 457 (810)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHCCCC
T ss_conf 99995687344852799999998738940899817885699997476699999999999846765
No 10
>PRK08841 aspartate kinase; Validated
Probab=100.00 E-value=0 Score=788.99 Aligned_cols=381 Identities=38% Similarity=0.541 Sum_probs=350.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 96699960858458889999999999999967998899980687304899999998614899889999998312999999
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGL 80 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l 80 (411)
|+++|+|||||||++++++++++++|.+..++|++++||||||+|+||+|+++++++...+++||+|.++|+||++|+.|
T Consensus 1 M~~iV~KFGGTSv~~~e~i~~va~~i~~~~~~~~~vvVVvSAm~g~Td~Ll~la~~i~~~~~~relD~lls~GE~lS~~l 80 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMAL 80 (392)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 98799915863579999999999999988756998999962899968999999986325999899999997659999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 99999843998635673324551213355200012362100334310680586034333556842443068624289999
Q gi|254780873|r 81 MVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAI 160 (411)
Q Consensus 81 ~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~i 160 (411)
|+.+|+++|+++.+++++|+++.||+.|+++++...++.++.+.++++.+||+|||||.+++|++||||||||||||+++
T Consensus 81 la~~L~~~G~~a~~l~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~l 160 (392)
T PRK08841 81 LAMTLNKLGYKARSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVAL 160 (392)
T ss_pred HHHHHHHCCCCCEEEECHHCCCCCCCCCCCEEEEHHCHHHHHHHHHCCCEEEECCEEECCCCCCEEECCCCCHHHHHHHH
T ss_conf 99999867997579871233512467776435202033879988735986994182010799987562799779999999
Q ss_pred HHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCC
Q ss_conf 98847345565346144024584212344110567999999988403110137887643313852676112377777654
Q gi|254780873|r 161 AAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 (411)
Q Consensus 161 a~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~ 240 (411)
|++|+|++|+||||||||||||||+||+|++|++|||+||+||||||||||||||++|+++++||++|||||++ .
T Consensus 161 Aa~l~A~~~eIwTDVdGv~taDPr~V~~A~~l~~isy~Ea~ELa~~GAkVlHp~tv~pa~~~~Ipi~v~ntf~~-----~ 235 (392)
T PRK08841 161 AGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFED-----G 235 (392)
T ss_pred HHHHCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEEECCCC-----C
T ss_conf 99809978999856776363798687687282647899999999769963688899999875975999836879-----9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHH
Q ss_conf 35454542101222310111234662000127750004841000145541285011123443222233310121230247
Q gi|254780873|r 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSL 320 (411)
Q Consensus 241 ~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~ 320 (411)
+||+|.... +..+|+||+..+|+++|++.+- ....+|..+...++++++++++.. +.+++++++++
T Consensus 236 ~GT~I~~~~---~~~~V~gIa~~~~~~~i~v~~~-----~~~~l~~~~~~~~i~v~~v~~~~~------~~~~~i~~~~~ 301 (392)
T PRK08841 236 EGTLIKGEA---GTQAVCGIALQRDLALIEVSSE-----SLSSLTKQCQMLGIEVWNVIEEAD------CTQIVIKQDAC 301 (392)
T ss_pred CCEEEECCC---CCCCEEEEEECCCEEEEEEECC-----CHHHHHHHHHHHCCEEEEECCCCC------EEEEEECHHHH
T ss_conf 982896678---8873389984497489998458-----707899998886956886103662------27999578899
Q ss_pred HHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHH
Q ss_conf 76688789888605961589748916999966786678557999999998679829999707848999970889999999
Q gi|254780873|r 321 EKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVR 400 (411)
Q Consensus 321 ~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~ 400 (411)
.++...+. +.+....++++||+||.+| +|+++|+|++|+++||||+||++||+||||||+++|.++|++
T Consensus 302 ~~l~~~~~--------~~i~~~~~va~VsvVG~~~---~Gva~~~f~aLa~~~InI~~is~SEinIS~vV~~~d~~kAv~ 370 (392)
T PRK08841 302 AKLKLVFD--------DKIRNSEAVSLLTLVGLEA---NGMVDHACNQLAQQGIDVHQCSTEPLSSMLVVDPANVDRAAN 370 (392)
T ss_pred HHHHHHHH--------CCCCCCCCCEEEEEECCCC---CCHHHHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHH
T ss_conf 99987511--------3121268934999988998---559999999999789987999803578999984999999999
Q ss_pred HHHHHCCCCCC
Q ss_conf 99987097779
Q gi|254780873|r 401 SLHSCYGLDVQ 411 (411)
Q Consensus 401 ~LH~~F~ld~~ 411 (411)
+||++||||.+
T Consensus 371 aLH~~F~l~~~ 381 (392)
T PRK08841 371 ILHKTYVVSEQ 381 (392)
T ss_pred HHHHHHCCCCH
T ss_conf 99988668850
No 11
>PRK09084 aspartate kinase III; Validated
Probab=100.00 E-value=0 Score=781.78 Aligned_cols=388 Identities=32% Similarity=0.420 Sum_probs=333.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
++|+|||||||+|++++++++++|.+. .++++||||||||+||.|+++++.....
T Consensus 1 mvV~KFGGtSv~~~~~i~~v~~ii~~~---~~~~vVVVSA~~gvTd~L~~~a~~~~~~~~~~~~~~~i~~~h~~~~~~l~ 77 (447)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN---PNTRLVVLSASSGVTNLLVALAEGAEPGDERFALLDEIRQIQYAILDRLR 77 (447)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHCC---CCCEEEEEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 989947855679899999999999727---99829999189996589999998754641389999999999999998733
Q ss_pred --------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------------------------998899999983129999999999984399863567332455121335520001
Q gi|254780873|r 61 --------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARIC 114 (411)
Q Consensus 61 --------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~ 114 (411)
.+.+++|+++|+||++|+.||+++|+++|++|.+++++|+ ++||++|++++++
T Consensus 78 ~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~D~lls~GE~lSa~lla~~L~~~G~~a~~ld~~~~-i~td~~~~~a~~~ 156 (447)
T PRK09084 78 DPNVVREEIERLLENITVLAEAASLATSLALTDELVSHGELMSTLLFVEALRERGVQAEWFDVRKV-MRTDDRFGRAEPD 156 (447)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEECCCCCCCCCC
T ss_conf 618799999999999999998632047741899999746799999999999967998388177894-6766866651447
Q ss_pred CCCC-CCHHHH---HHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCC
Q ss_conf 2362-100334---310680586034333556842443068624289999988473455653461440245842123441
Q gi|254780873|r 115 RVDE-KKIVTH---LKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAH 190 (411)
Q Consensus 115 ~~~~-~~l~~~---l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~ 190 (411)
.... .++.+. +.++.+||+|||||.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||+|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~TAa~la~~l~A~~~~IwtDV~Gi~taDPr~V~~A~ 236 (447)
T PRK09084 157 VAAIAELAQEQLLPLLEEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAR 236 (447)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEECCCCCEEECCCCCCCCCC
T ss_conf 89999999999877436986895004576699977761799606899999996698499996177833606987676652
Q ss_pred EECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 10567999999988403110137887643313852676112377777654354545421012223101112346620001
Q gi|254780873|r 191 LMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQIS 270 (411)
Q Consensus 191 ~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~It 270 (411)
+|++|||+||+||||||||||||+|++|+++++|||+|||||+ |+.+||+|+.. ..+.+.+|+|++++++++|+
T Consensus 237 ~i~~lsy~Ea~ELa~~GAkVlHp~av~pa~~~~IPi~I~nt~~----P~~~GT~I~~~--~~~~~~vk~I~~~~~~~~i~ 310 (447)
T PRK09084 237 RIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKD----PEAGGTWITND--TENPPLFRAIALRRNQTLLT 310 (447)
T ss_pred CCCCCCHHHHHHHHHCCCHHCCHHHHHHHHHCCCEEEEECCCC----CCCCCEEEECC--CCCCCCCCCEECCCCEEEEE
T ss_conf 0363489999999977710017588999998197599955789----89997089426--65666622111148769999
Q ss_pred CC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHH--HHHHHHHHC-CCCEEEEECCE
Q ss_conf 27--75000484100014554128501112344322223331012123024776688--789888605-96158974891
Q gi|254780873|r 271 LR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALA--VLSDNKENI-GYDVIQHEDNL 345 (411)
Q Consensus 271 i~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~--~L~~~~~~~-~~~~I~~~~~~ 345 (411)
++ +|.+.+||++++|+.|++++||||||+|| + .+++|+++..+...... ..+++..++ .+..+++++++
T Consensus 311 i~~~~m~~~~G~~~~if~~l~~~~I~vd~i~ss--e----~sis~~i~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~ 384 (447)
T PRK09084 311 LHSLNMLHAHGFLAEVFGILARHKISVDLITTS--E----VSVSLTLDTTGSTSTGDTLLTQALLMELSQLCRVEVEEGL 384 (447)
T ss_pred EEECCCCCCCCHHHHHHHHHHHCCCCEEEEECC--C----CEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCE
T ss_conf 983786632018999999999759927999804--6----5378997041145556689999999987504848983894
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 69999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
|+||+||+||+++||+++|+|++|+ +|||.||+ +||+||||||+++|.++|+++||++||.
T Consensus 385 a~VsvVG~gm~~~~gva~r~f~aL~--~inI~~IsqgsSe~nIs~vV~~~d~~~Av~aLH~~ffe 447 (447)
T PRK09084 385 ALVALIGNNLSKACGVAKRVFGVLE--PFNIRMICQGASEHNLCFLVPESDAEQVVQALHQNLFE 447 (447)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHH--CCCCEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 8999989672328549999999853--78918998068778799998489999999999998619
No 12
>PRK05925 aspartate kinase; Provisional
Probab=100.00 E-value=0 Score=765.55 Aligned_cols=393 Identities=26% Similarity=0.360 Sum_probs=339.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----------------------
Q ss_conf 9669996085845888999999999999996799889998068730489999999861----------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT---------------------- 58 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~---------------------- 58 (411)
|++||+|||||||+|+++|++++++|.+ +.+.+||||||||+||.|+++++...
T Consensus 1 M~~iV~KFGGtSv~~~e~i~~va~ii~~----~~~~~vVVSA~~gvTd~L~~~~~~~~~~~~~~~~~l~~~h~~i~~~l~ 76 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICK----EKPSFVVVSAVAGVTDLLEEFCRVSKGKREQITEKIREKHEEIAKELG 76 (440)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
T ss_conf 9869993796233899999999999971----599789996999970899999876201078999999999999998725
Q ss_pred ------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CC
Q ss_conf ------------------48998899999983129999999999984399863567332455121335520001236-21
Q gi|254780873|r 59 ------------------SIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVD-EK 119 (411)
Q Consensus 59 ------------------~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~-~~ 119 (411)
....++++|.++|+||++|+.|++++|++.|+++.+++++++ ++||++|+++.++... ..
T Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~ils~GE~~Sa~lla~~l~~~g~~a~~~da~~~-i~td~~~~~a~~~~~~~~~ 155 (440)
T PRK05925 77 IEFSLSPWWERLEHFEDKEEISSEDQARILAIGEDISASLICAYCCTNVLPLEFLEARQV-ILTDDQYLRATPDLALMQT 155 (440)
T ss_pred CCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEE-EEECCCCCCCCCCHHHHHH
T ss_conf 421246899999987640448847788898872999999999999967998288430328-9826844330335888888
Q ss_pred CHHH-HHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHH
Q ss_conf 0033-431068058603433355684244306862428999998847345565346144024584212344110567999
Q gi|254780873|r 120 KIVT-HLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE 198 (411)
Q Consensus 120 ~l~~-~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~ 198 (411)
++.. .++++.+||+|||+|.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||+|++|++|||+
T Consensus 156 ~~~~~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~sA~~la~al~A~~~~IwTDV~Gv~taDPriV~~A~~i~~lsy~ 235 (440)
T PRK05925 156 NWHELNLQEDAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFE 235 (440)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEECCCCCCCCCCCCCCCCCHH
T ss_conf 89987522796899616300189997776169973089999999617849998316573374799868888566630899
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHCCCCCCCC
Q ss_conf 999988403110137887643313852676112377777654354545421-0122231011123466200012775000
Q gi|254780873|r 199 EMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGE-DIMEKKVITGIAYTKDEAQISLRRLRDH 277 (411)
Q Consensus 199 Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~-~~~~~~~Vk~Is~~~~i~~Iti~~~~~~ 277 (411)
||+||||||||||||||++|++++|||++|||||+ |+.+||+|.... ...+++.||+|+.++++++++++.....
T Consensus 236 Ea~ELa~~GAkVlHprtv~pa~~~~Ipi~i~nt~~----p~~~GT~I~~~~~~~~~~~~Vk~ia~~~~~~i~~i~~~~~~ 311 (440)
T PRK05925 236 EMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFD----VTKGGTWIYASDKEVSYEPRIKALSLKQNQALWSVDYNSLG 311 (440)
T ss_pred HHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEEECCCCCCCCCCEEEEEECCCCEEEEEECCCCC
T ss_conf 99999976964048999999998399589967899----99995389855766556887799997187069999657885
Q ss_pred CCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHH-HHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCC
Q ss_conf 48410001455412850111234432222333101212302477-66887898886059615897489169999667866
Q gi|254780873|r 278 PGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLE-KALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQ 356 (411)
Q Consensus 278 ~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~-~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~ 356 (411)
.++++++|+.|++++++++||+++.+ +++|++++.++. +....+.+..+ .+..+..++++|+||+||.||+
T Consensus 312 ~~~~~~vf~~l~~~~i~~~~i~s~~~------~vs~ti~~~~~~~~~~~~l~~~l~--~~~~v~~~~~~a~VsiVG~gm~ 383 (440)
T PRK05925 312 LVRLEKVLGILRSLGIVPGLVMAQNS------GVYFTTDDDDISEEYIQHLTDALS--AFGTVSCEGPLALITMIGAKLA 383 (440)
T ss_pred CHHHHHHHHHHHHCCCCEEEEEECCC------EEEEEECHHHHHHHHHHHHHHHHH--HCCCEEECCCEEEEEEECCCCC
T ss_conf 06699999999975993389972475------399997703656999999999986--2695797089489999899989
Q ss_pred CCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 7855799999999867982999970784899997088999999999987097779
Q gi|254780873|r 357 SYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 357 ~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
.||+++++|++|++++||++|+++|+++|||||+++|.++|+++||++||.+.+
T Consensus 384 -~~~i~~~~~~~L~~~~I~i~~i~~Se~~Is~vV~~~d~~~Av~aLH~~ff~~~~ 437 (440)
T PRK05925 384 -SWKVVTTFTEKLRGYQTPVFCWCQSDMALNLVVNEELAVAVTELLHNDYVKQKF 437 (440)
T ss_pred -CHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHCCCC
T ss_conf -769999999998638981899986888899998199999999999999963686
No 13
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=100.00 E-value=0 Score=759.35 Aligned_cols=396 Identities=22% Similarity=0.309 Sum_probs=332.6
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHHHHHHHHC--------------------
Q ss_conf 9669996085845888999999999999996-7998899980687304899999998614--------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVD-RGQEVAMVVSAMSGETDRLAELCRQVTS-------------------- 59 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~-~g~~~ivVvSA~~g~Td~L~~l~~~~~~-------------------- 59 (411)
|++||+|||||||+|++++++++++|.+..+ .|.+++||||||||+||.|+++++....
T Consensus 7 ~~wVV~KFGGTSVas~~~~~~Va~iI~~~~~~~g~rvvVVvSAm~gvTn~L~~la~~a~~~~~~l~~i~~~h~~i~~eL~ 86 (865)
T PRK08961 7 DRWVVLKFGGTSVSRRHRWDTIAKLARKRLNETGGRVLVVVSALSGVTNELTAIADGAADSASRVAALEQRHREFLAELE 86 (865)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98799862846689899999999999999985099889998599986389999998642105678899999999999741
Q ss_pred ------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------89988999999831299999999999843998635673324551213355200012
Q gi|254780873|r 60 ------------------------IDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 (411)
Q Consensus 60 ------------------------~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~ 115 (411)
..+++.+|.++|+||++|+.|++++|+++|+++.++|++++ +.|++.++++....
T Consensus 87 ~~~~~~l~~~l~~L~~ll~~i~~~~~s~~~~d~ilS~GE~lSt~l~a~~L~~~Gi~a~~lDar~~-l~t~~~~~~~~~~~ 165 (865)
T PRK08961 87 LDAQAVLANRLAALQALLTDARAATRALDWQAEVLGQGELLSSRLGAAYLHASGLDMGWLDAREW-LTALPPQPNQSEWS 165 (865)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCEEEHHHHHHHHHHHHHHHHCCCCCEEECHHHH-HHCCCCCCCCCCHH
T ss_conf 00567899999999999866664057835634586173799999999999967998178568996-00146767643034
Q ss_pred CC-----C----CCHHHHH-H-HCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCC
Q ss_conf 36-----2----1003343-1-0680586034333556842443068624289999988473455653461440245842
Q gi|254780873|r 116 VD-----E----KKIVTHL-K-KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPR 184 (411)
Q Consensus 116 ~~-----~----~~l~~~l-~-~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr 184 (411)
.. . ..+...+ . .+.++|+|||||.+++|++||||||||||||+++|++|+|++|+||||||||||||||
T Consensus 166 ~~l~~~~~~~~~~~l~~~~~~~~~~vvVtqGFiG~~~~G~tTTLGRGGSDySAallAaaL~A~~veIWTDVdGI~TaDPR 245 (865)
T PRK08961 166 QRLSVSCQWQSDAGWRARFAAQPAQVLITQGFIARHADGGTAILGRGGSDTSAAYFGALLGAARVEIWTDVPGMFSANPK 245 (865)
T ss_pred HHHHHHHHHCCCHHHHHHHHCCCCCEEEECCCEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC
T ss_conf 44333333302578898875059827995183351699987770798558999999997499889998589878668998
Q ss_pred CCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12344110567999999988403110137887643313852676112377777654354545421012223101112346
Q gi|254780873|r 185 IEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTK 264 (411)
Q Consensus 185 ~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~ 264 (411)
+||+|++|++|||+||+||||||||||||+|++|++++|||++|||||+ |+.+||+|+... ...+.+|+|+.++
T Consensus 246 iVp~Ar~I~~LSy~EA~ELA~fGAKVLHP~Ti~Pa~~~~IPv~VknT~~----Pe~~GT~I~~~~--~~~~~~~aia~r~ 319 (865)
T PRK08961 246 EVPDARLLTRLDYYEAQEIATTGAKVLHPRSIKPCRDAGVPMAILDTER----PDLSGTSIDGNA--EPVPGVKAISRRN 319 (865)
T ss_pred CCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCCEEECCC--CCCCCEEEEEEEC
T ss_conf 7888658781389999999976875248666799997699679817899----899972784898--7775527999826
Q ss_pred CCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 62000127--75000484100014554128501112344322223331012123024776688789888605-9615897
Q gi|254780873|r 265 DEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENI-GYDVIQH 341 (411)
Q Consensus 265 ~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~-~~~~I~~ 341 (411)
|+++++++ +|.+..||++++|++|++|+||||||++| | +++++|++...--.-.+.++.+.+++ .++.+++
T Consensus 320 ~~tll~i~s~~M~~~~GFla~vF~i~~~~~isvDli~TS--E----vsvs~tld~~~~~~~~~~~~~l~~~l~~~~~~~~ 393 (865)
T PRK08961 320 GIVLVSMEGIGMWQQVGFLADVFTLFKKHGLSVDLIGSA--E----TNVTVSLDPSENLVNTDVLAALSDDLSQICKVKI 393 (865)
T ss_pred CCEEEEECCCCHHHHCCHHHHHHHHHHHCCCCEEEEEEE--E----EEEEEEECCCCCCCCHHHHHHHHHHHHHHCCEEE
T ss_conf 938999646011211365999999999839954899602--4----6899996686454677999999999985423687
Q ss_pred ECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 48916999966786678557999999998679829999707848999970889999999999870977
Q gi|254780873|r 342 EDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 (411)
Q Consensus 342 ~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ld 409 (411)
..+||.||+||.+||+.-...+.+|..+.++.|.....++|+.|++||||++++++.++.||.+++-.
T Consensus 394 ~~~c~~~~~vg~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~~~n~t~v~d~~~~~~~~~~~h~~~~~~ 461 (865)
T PRK08961 394 IVPCAAITLVGRGMRSLLHKLSPVWATFGKERVHMISQSSNDLNLTFVIDESDADGLLPRLHAELIES 461 (865)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEECHHHCCHHHHHHHHHHHCC
T ss_conf 33621899853005677888758999852385589861036772599971022121567779998267
No 14
>PRK09181 aspartate kinase; Validated
Probab=100.00 E-value=0 Score=693.71 Aligned_cols=384 Identities=22% Similarity=0.265 Sum_probs=310.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH-------------------------
Q ss_conf 9669996085845888999999999999996799889998068730489999999-------------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR------------------------- 55 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~------------------------- 55 (411)
|.+.|+|||||||+|++++++.+.+.....+++++++||||||||+||+|+++.+
T Consensus 2 mm~~V~KFGGTSVa~~e~i~~~iii~~~~~~~~~~~vVVVSAmggvTd~Lle~~~~~~~g~~~~~~~~~~~~~~~~~l~~ 81 (476)
T PRK09181 2 MMHTVEKIGGTSMSAFDAVLDNIILRPRKGKDLYNRIFVVSAYGGMTDLLLEHKKTGEPGVYALFAKDENDEAWREALEA 81 (476)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHH
T ss_conf 95199954866302299999998654201356898899988999877889864301340267998863143358999999
Q ss_pred ----------HHHCC--------------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------86148--------------------------------------998899999983129999999999984
Q gi|254780873|r 56 ----------QVTSI--------------------------------------DNARERDVVISTGEQVSSGLMVLALQS 87 (411)
Q Consensus 56 ----------~~~~~--------------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~ 87 (411)
++... ..++.+|+++|+||++|+.+++.+|++
T Consensus 82 i~~~~~~i~~~L~~~~~~~~~~~~~i~~~i~~~~~~l~~l~~~~~~g~~~l~e~~~~~rd~l~s~GE~lSa~l~a~~L~~ 161 (476)
T PRK09181 82 VEQRMLAINAELFADGLDRARADKFIRERIEEARACLIDLHRLCSYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQN 161 (476)
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999851705578889999999999999999999987505014666666789999876089889999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH----HHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 39986356733245512133552000123621003343----10680586034333556842443068624289999988
Q gi|254780873|r 88 LGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHL----KKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAA 163 (411)
Q Consensus 88 ~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l----~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~ 163 (411)
+|++|.+++...+ .++.....+ +++.+.+ ..+.+||+||| +.+.+|.+||||||||||||+++|++
T Consensus 162 ~Gi~a~~vdl~~~--------~~~~~~~~~-~~~~~~~~~~~~~~~i~VvtGF-~~~~~G~~~tlgRggSD~ta~~ia~~ 231 (476)
T PRK09181 162 RGVNARFVDLTGW--------DDDEPLTLD-ERIHKAFKDIDLSKELPIVTGY-AKCKEGLMRTFDRGYSEMTFSRIAVL 231 (476)
T ss_pred CCCCEEEEECCCC--------CCCCCCCHH-HHHHHHHHCCCCCCCEEEECCC-CCCCCCCEEECCCCCHHHHHHHHHHH
T ss_conf 7997089843235--------665655578-9999997403545745894781-66899835435888459999999998
Q ss_pred HCHHHHHHHCCHHHHEECCCCCC--CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 47345565346144024584212--3441105679999999884031101378876433138526761123777776543
Q gi|254780873|r 164 IKADRCDIYTDVCGIYTTDPRIE--PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241 (411)
Q Consensus 164 l~A~~~~i~tdV~Gi~taDPr~v--~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~ 241 (411)
|+|++|+|||||+ |||||||+| ++|++|++|||+||+||||||||||||+|++|+++++||++|||||+| +.+
T Consensus 232 l~a~~~~i~~dv~-v~taDP~~v~~~~~~~i~~~sy~ea~ela~~Ga~vlhp~~~~p~~~~~Ipi~v~nt~~p----~~~ 306 (476)
T PRK09181 232 TGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEP----EHP 306 (476)
T ss_pred HCCCEEEEEEECC-EECCCCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHCCCCEEEEECCCC----CCC
T ss_conf 4898999996365-31279884365434473526899999998659864080678999975996899706899----999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHH
Q ss_conf 5454542101222310111234662000127--75000484100014554128501112344322223331012123024
Q gi|254780873|r 242 GTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319 (411)
Q Consensus 242 GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d 319 (411)
||+|+.+. ..+.+.+++|+++++++++++. +|.+.+||++++|+.|++++||+++++|+.+ +++++++. +
T Consensus 307 GT~I~~~~-~~~~~~v~~Ia~~~~v~~i~v~~~~m~~~~g~~~~if~~l~~~~I~v~~~~ss~~------sisi~~~~-~ 378 (476)
T PRK09181 307 GTLITKDY-VSEQPRVEIIAGRDKVFALEVFDQDMVGEDGYDAEIMEILTRHKVRYISKDTNAN------TITHYLSG-S 378 (476)
T ss_pred CEEEECCC-CCCCCCEEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCC------EEEEEECC-C
T ss_conf 75994687-6877753899845752799950688788858899999999975996898525776------38999469-9
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE--CCCEEEEEECHHHHHH
Q ss_conf 77668878988860596158974891699996678667855799999999867982999970--7848999970889999
Q gi|254780873|r 320 LEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT--SEIKISVLIDSAYTEL 397 (411)
Q Consensus 320 ~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss--Se~~IS~VV~~~d~~~ 397 (411)
.+.+.++++++.+++....+. ..++++||+||+||+ .||+++|+|++|++++|||+||++ ||+||||||+++|.++
T Consensus 379 ~~~~~~~~~~l~~~~~~~~i~-~~~~a~vsvVG~gm~-~~gvaak~f~aL~~~~InI~~isqgsseinIs~vV~~~d~~~ 456 (476)
T PRK09181 379 LKSLKRVLADLEKRYPNAEVT-VRPVAIVSAIGSDIA-VPGILAKAVQALADAGINVLALHQSMRQVNMQFVVDEDDYKE 456 (476)
T ss_pred HHHHHHHHHHHHHHCCCCEEE-CCCEEEEEEECCCCC-CCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHH
T ss_conf 999999999998654666563-388589999849998-634999999999978998899967877156999985899999
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999999870977
Q gi|254780873|r 398 AVRSLHSCYGLD 409 (411)
Q Consensus 398 Av~~LH~~F~ld 409 (411)
|+++||++||.+
T Consensus 457 Av~aLH~~ffe~ 468 (476)
T PRK09181 457 AICALHRALVEN 468 (476)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998289
No 15
>KOG0456 consensus
Probab=100.00 E-value=0 Score=642.02 Aligned_cols=391 Identities=29% Similarity=0.415 Sum_probs=333.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHH----------------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999----------------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELC---------------------------- 54 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~---------------------------- 54 (411)
++|||||||||++++++..++..+.-. ..+++++|+|||+++||.|.-..
T Consensus 80 ~~V~KFGGsSV~s~~~~i~v~~l~~~~--~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~ta 157 (559)
T KOG0456 80 TCVMKFGGSSVGSAERMIEVAVLILYF--PDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRTA 157 (559)
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHC--CCCCEEEEEECCCCCHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 899942884113340013356788746--877738999713441254533100200016567434789999999877669
Q ss_pred HH-----------------------HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98-----------------------6148998899999983129999999999984399863567332455121335520
Q gi|254780873|r 55 RQ-----------------------VTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMA 111 (411)
Q Consensus 55 ~~-----------------------~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a 111 (411)
++ .-..-++|++|+++|+||.+|+++|++|||++|++|+++|.+++++.|.+.+.++
T Consensus 158 ~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~ 237 (559)
T KOG0456 158 HELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTND 237 (559)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHEECCCCCCCCCH
T ss_conf 88544889999999999999999889876152456676543467889999999873285323511434203324333432
Q ss_pred CCCCCCCCCHHHH-----HHHCCEEEEECCCC-CCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCC
Q ss_conf 0012362100334-----31068058603433-35568424430686242899999884734556534614402458421
Q gi|254780873|r 112 RICRVDEKKIVTH-----LKKKQVVVITGFQG-LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRI 185 (411)
Q Consensus 112 ~~~~~~~~~l~~~-----l~~~~v~v~~Gf~g-~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~ 185 (411)
.+.+..+....+. .+++.+||++||+| .-+.|.++||||||||.||+.+|.+|+++|+|+|+|||||||||||+
T Consensus 238 d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~ 317 (559)
T KOG0456 238 DILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRI 317 (559)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCEECCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCEEECCCCC
T ss_conf 47888789998752431013776636860033676562000356772166899998871814542132347527438864
Q ss_pred CCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 23441105679999999884031101378876433138526761123777776543545454210122231011123466
Q gi|254780873|r 186 EPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKD 265 (411)
Q Consensus 186 v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~ 265 (411)
+|.|+++++++|+||.||+|||++||||.+++|+++.+||+||||++||. .+||+|++.+ .+.+...++|+.++|
T Consensus 318 ~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~----~~GTvI~~d~-~m~k~~~TsI~lK~n 392 (559)
T KOG0456 318 YPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT----APGTVITPDR-DMSKAGLTSIVLKRN 392 (559)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEECCCCCC----CCCEEECCCH-HHHHCCCEEEEEECC
T ss_conf 77750068658778778775211210563334113067625863377999----9942863626-665345558998354
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHH---HHHHHH---HHHHHCCCC
Q ss_conf 2000127--75000484100014554128501112344322223331012123024776---688789---888605961
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEK---ALAVLS---DNKENIGYD 337 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~---~~~~L~---~~~~~~~~~ 337 (411)
++++.|. .|.++.||+|+||++|++++|+||+|++|.. +||++++..++.. ....|. ++.+.+ .
T Consensus 393 v~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV------~iSltL~~~~~~sreliq~~l~~a~eeL~ki--~ 464 (559)
T KOG0456 393 VTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEV------SISLTLDPSKLDSRELIQGELDQAVEELEKI--A 464 (559)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEE------EEEEECCHHHHHHHHHHHHHHHHHHHHHHHH--H
T ss_conf 7999800230345302899999999974807999871168------9998408032115778876699999999886--2
Q ss_pred EEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 5897489169999667866785579999999986798299997--07848999970889999999999870977
Q gi|254780873|r 338 VIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLD 409 (411)
Q Consensus 338 ~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ld 409 (411)
.+..-+..++||+||. |++..|++.|+|..|+++||||+||+ +|++||||+|+++++++|+++||.+||..
T Consensus 465 ~vdll~~~sIiSLiGn-vq~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~ 537 (559)
T KOG0456 465 VVDLLKGRSIISLIGN-VQNSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFET 537 (559)
T ss_pred HHHHHCCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEEEEECHHHHHHHHHHHHHHHCCC
T ss_conf 3446426428766545-545568898899999864856264105655210799977388899999999997277
No 16
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260 Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway. This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=100.00 E-value=0 Score=579.90 Aligned_cols=403 Identities=43% Similarity=0.610 Sum_probs=374.4
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH----------------------
Q ss_conf 9669996085845888999999999999996799889998068730489999999861----------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT---------------------- 58 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~---------------------- 58 (411)
|.++|+||||||+++.+++++.++++......|++++||+||++++||.|+.+.++..
T Consensus 1 ~~~~v~kfGGt~~~~~~~~~~~~~~~~~~~~~g~~~~vv~sa~~~~td~l~~~~~~~~pg~~~~~~~~~~~~~~~~~~~~ 80 (480)
T TIGR00656 1 MELIVQKFGGTSVGSGERIKNAARIVLKEKEEGHKVVVVVSAMGGVTDALLSLAEGLDPGEGGAKGGDLLGILRELGLPL 80 (480)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 94478742672125426788888788877640771489986156520246655432023221135678899999864333
Q ss_pred -------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--CCCCCCCCCCCCCCC
Q ss_conf -------------------------48998899999983129999999999984399863567--332455121335520
Q gi|254780873|r 59 -------------------------SIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQ--GWQIPIMTDSLHGMA 111 (411)
Q Consensus 59 -------------------------~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~--~~~~~i~t~~~~~~a 111 (411)
..-+++++|.++|+||++|+.+++..|+..|+++.+++ +++++++|+++|+++
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~s~Ge~~s~~~~~~~l~~~g~~~~~~~p~g~~~g~~t~~~~~~a 160 (480)
T TIGR00656 81 RYPEAISDEILELELNKLLLAAAALGEWTPRERDLLVSYGELLSSALLSGALRDLGVKAIWLDPFGGEAGILTDDNFGNA 160 (480)
T ss_pred HCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCCCCC
T ss_conf 11001355678877777888778864217557777764112578999999998527621441434562222324545552
Q ss_pred CCCCCCC-----CCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf 0012362-----10033431068058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r 112 RICRVDE-----KKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 112 ~~~~~~~-----~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v 186 (411)
++....+ .++.+.++++.+||++||+|.+.+|++||||||||||||+++|.+|+|+.|+|||||+||||.|||++
T Consensus 161 ~~~~~~~~~~~~~~l~~~l~~g~~~~~~Gf~G~~~~g~~ttlGrGGsd~~a~~l~~~l~a~~~~~~tdv~G~~~~dPr~~ 240 (480)
T TIGR00656 161 KIDELATEGLAAERLLPLLEEGIIPVVAGFQGATEEGDTTTLGRGGSDLTAALLGAALKADRVDIYTDVPGVYTTDPRVV 240 (480)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 00022246778888888875497589723335776764443047862378999875217763799744785012686424
Q ss_pred CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHH-HHCCCEEEEECCCCCCCCCCCCCCCCCC----CCCCCCCC-----C
Q ss_conf 344110567999999988403110137887643-3138526761123777776543545454----21012223-----1
Q gi|254780873|r 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELA-MLYKMCLFVRSSFEDHGQQEQLGTLICS----GEDIMEKK-----V 256 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~-~~~~ipi~i~ntf~~~~~~~~~GT~I~~----~~~~~~~~-----~ 256 (411)
+.|++++.++|+|+.|||++|+||+||++++|+ ++.++|+.+++++++. ..||+|++ ....++.+ .
T Consensus 241 ~~a~~~~~~~~~e~~~la~~Ga~~l~p~~~~~~d~~~~~~~~~~~~~~~~----~~gt~~~~~~d~~~~~~~~~d~~~~~ 316 (480)
T TIGR00656 241 EGAKKLPKISYEEALELATLGAKVLHPRTLEPADKEGGVPIEVRSSFDPE----AEGTLITNEKDFHGSSMEGPDVFEPL 316 (480)
T ss_pred CCCCCCCCCCHHHHHHHHHCCCHHCCCCCCCCCCCCCCCCEEEEECCCCC----CCCCEECCCCCCCCCCCCCCCHHHHH
T ss_conf 56432233238999999752501203210020110136635886245777----67414304433345666674023321
Q ss_pred CCCCCCCCC-CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 011123466-2000127--7500048410001455412850111234432222333101212302477668878988860
Q gi|254780873|r 257 ITGIAYTKD-EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKEN 333 (411)
Q Consensus 257 Vk~Is~~~~-i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~ 333 (411)
+++++..++ ++++++. ++.+.+|+++++|..|++++||+|+|.|+.++. .++++|+++..+.+.+.+.|.+....
T Consensus 317 ~~~~~~~~~p~~~~~~~g~~~~~~~g~~~~~~~~la~~~~~~~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (480)
T TIGR00656 317 VKGIALSKNPVARLTVPGPGMLGKPGFLAELFGALAERGINVDLISQTPSED--KTSISLTVDEEDADEAVRALKDESGA 394 (480)
T ss_pred HHHEEECCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCC--CCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 1101314785258886054323554058899988741574289985067766--33058997246606899988765433
Q ss_pred CC--------CCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHH
Q ss_conf 59--------615897489169999667866785579999999986798299997--07848999970889999999999
Q gi|254780873|r 334 IG--------YDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLH 403 (411)
Q Consensus 334 ~~--------~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH 403 (411)
.+ ++++..++++++|+++|.||...||+++++|.+|.+.++++.+++ +|+.+++++|+++|..++++.||
T Consensus 395 ~~~~~l~~~~~~~~~~~~~~~~~~~~g~g~~~~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~d~~~~~~~lh 474 (480)
T TIGR00656 395 AGLKFLDNNLLDRLEVEEGLAKVSIVGAGLVGAPGVASEIFSALEEKNINILMIGQGSSETSISVLVDEKDAEKAVRLLH 474 (480)
T ss_pred HHHHHHCCCCCCCEECCCCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCEEEEECCCCCCEEEEEEECHHHHHHHHHHH
T ss_conf 21122023232100003671078874376212565035665432016850678525765404799960311689999988
Q ss_pred HHCCCC
Q ss_conf 870977
Q gi|254780873|r 404 SCYGLD 409 (411)
Q Consensus 404 ~~F~ld 409 (411)
..|+++
T Consensus 475 ~~~~~~ 480 (480)
T TIGR00656 475 EVFELS 480 (480)
T ss_pred HHHCCC
T ss_conf 764059
No 17
>PRK08373 aspartate kinase; Validated
Probab=100.00 E-value=0 Score=576.85 Aligned_cols=296 Identities=29% Similarity=0.410 Sum_probs=250.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC----------------------
Q ss_conf 6699960858458889999999999999967998899980687304899999998614----------------------
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS---------------------- 59 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~---------------------- 59 (411)
|.+|+|||||||+++ +++++++++... ++++++||||||+|+||.|+++++....
T Consensus 4 km~V~KFGGTSV~~a--~~~v~~iv~~~~-~~~~vvVVVSAm~gvTd~Li~~a~~~~~~~~~I~~~h~~~a~~l~~~~~~ 80 (359)
T PRK08373 4 KMIVVKFGGSSVRYD--FEEAVELVKSLS-EEKEVIVVVSALKGVTDCLLKYANTDKSAALEIEKIHEEFAKEHGIDTEI 80 (359)
T ss_pred CCEEEEECHHCCHHH--HHHHHHHHHHHH-CCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 879984281013328--999999999875-28988999679999779999999765777899999999999983666778
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCHH
Q ss_conf -------------89988999999831299999999999843998635673324551213355200012362----1003
Q gi|254780873|r 60 -------------IDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDE----KKIV 122 (411)
Q Consensus 60 -------------~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~----~~l~ 122 (411)
....+.+|.++|+||++|+.||+++|+++|+++.+++++++ +.||++|++++++...+ ..+.
T Consensus 81 l~~~l~~l~~~~~~~~~~~~D~Ils~GE~lSa~Lla~~L~~~Gi~a~~lda~~i-i~td~~~~~a~vd~~~s~~~~~~l~ 159 (359)
T PRK08373 81 LSPYLKELFNRPDFPSEALRDYILSIGERLSAVIFAEGLKILGINGKVVDPWDI-LEAKGNFGNAFIDIKKSKRNAKVVY 159 (359)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHE-EEECCCCCCEEECHHHHHHHHHHHH
T ss_conf 899999987311388457666677673999999999999977998099754895-8853876757754787676699999
Q ss_pred HHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHH
Q ss_conf 34310680586034333556842443068624289999988473455653461440245842123441105679999999
Q gi|254780873|r 123 THLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLE 202 (411)
Q Consensus 123 ~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~e 202 (411)
+.++++.+||+|||+| +.+|.+||||||||||||+++|++|+|++|+||||||||||||||+||+|++|++|||+||+|
T Consensus 160 ~~l~~~~i~Vv~GFiG-~~~G~~TTLGRGGSDyTAailA~~L~A~~v~IwTDVdGI~TADPriV~~Ar~I~~lSY~EA~E 238 (359)
T PRK08373 160 EALERGKIPVVPGFYG-NLNGYRVTLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYVSYDEIKI 238 (359)
T ss_pred HHHCCCCEEEECCEEE-ECCCCEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCCEECCCCCCCCCEECCCCCHHHHHH
T ss_conf 8732795899367467-049926430699716899999997499789997589851608998789874888218999999
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCC
Q ss_conf 88403110137887643313852676112377777654354545421012223101112346620001277500048410
Q gi|254780873|r 203 MSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISA 282 (411)
Q Consensus 203 La~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a 282 (411)
|||||||||||+|++|++ ++||++|||||+|. .||+|+.+.+.| + +-.+...+|.+.|++.++++.||+.+
T Consensus 239 LA~~GAKVLHPrti~Pak-k~IPi~v~nT~~~~-----~GTLIt~e~~~~--~-~~~~~~~~~~a~~~~~~~~~~~~~~~ 309 (359)
T PRK08373 239 AAKLGMKALHWKAIDLVK-GYIPIIFGRTRDWR-----MGTLISNESSGM--P-ILVHKVAEDHAEILVVNVAEEIPLPY 309 (359)
T ss_pred HHHCCCCCCCHHHHHHHH-HCCCEEEECCCCCC-----CCEEEECCCCCC--C-EEEEEECCCCCEEEEECCCCCCCCCC
T ss_conf 997797416888899998-09957992679788-----964785267888--2-57886225654589962677898661
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 001455412850111234432222333101212302477668878988
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
++.+ .|-+ =+.+.++.+++..+++.+++.
T Consensus 310 ~~~~----~g~~---------------~~~~~~~~~~~~~~~~~~~~~ 338 (359)
T PRK08373 310 EVIE----EGEF---------------WVKYKVPKEDLIEILREIHRR 338 (359)
T ss_pred EEEE----CCCC---------------EEEEEEEHHHHHHHHHHHHHH
T ss_conf 5554----2786---------------399994388889999999999
No 18
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=100.00 E-value=0 Score=573.81 Aligned_cols=239 Identities=44% Similarity=0.644 Sum_probs=231.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCC-----HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 6999608584588899999999999999679988999806873-----04899999998614899889999998312999
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSG-----ETDRLAELCRQVTSIDNARERDVVISTGEQVS 77 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g-----~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s 77 (411)
+||+|||||||+|++++++++++|++..++|++++|||||||+ .||.|++++.+.....+++++|.++|+||++|
T Consensus 1 iiV~KFGGtSv~~~~~i~~va~iI~~~~~~~~~~vVVvSAmg~~~~~~~td~L~~l~~~~~~~~~~~~~D~l~s~GE~lS 80 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIIS 80 (244)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
T ss_conf 98981185237999999999999988987799889997999999975899999999997530389899999997430999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHH
Q ss_conf 99999999843998635673324551213355200012362100334310680586034333556842443068624289
Q gi|254780873|r 78 SGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSA 157 (411)
Q Consensus 78 ~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA 157 (411)
+.+|+.+|+++|+++.++++++++++||++|+++++...+.+++.+.++++.+||+|||||.+.+|++||||||||||||
T Consensus 81 a~lla~~L~~~Gi~a~~~~~~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~TA 160 (244)
T cd04260 81 AVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTA 160 (244)
T ss_pred HHHHHHHHHHCCCCCEEEEHHHCCEECCCCCCCEEEEEECHHHHHHHHHHCCEEEECCCCCCCCCCCEEECCCCCHHHHH
T ss_conf 99999999964998748658888353268777436765158999999863463574031024689966771898468999
Q ss_pred HHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCC
Q ss_conf 99998847345565346144024584212344110567999999988403110137887643313852676112377777
Q gi|254780873|r 158 VAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQ 237 (411)
Q Consensus 158 ~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~ 237 (411)
+++|++|+|++|+||||||||||+|||++|+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+|+
T Consensus 161 a~lA~~L~A~~~~IwtDV~Gv~taDPr~v~~A~~i~~lsy~EA~ELa~~GAkVlHp~ti~pa~~~~Ipi~Irnt~~~~-- 238 (244)
T cd04260 161 AALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-- 238 (244)
T ss_pred HHHHHHCCCCEEEEEECCCEEEECCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCC--
T ss_conf 999996099889996468712717998688876877318999999997797516899999999869818997079887--
Q ss_pred CCCCCCCCC
Q ss_conf 654354545
Q gi|254780873|r 238 QEQLGTLIC 246 (411)
Q Consensus 238 ~~~~GT~I~ 246 (411)
+||+|+
T Consensus 239 ---~GT~Is 244 (244)
T cd04260 239 ---PGTLIT 244 (244)
T ss_pred ---CCCEEC
T ss_conf ---987749
No 19
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=100.00 E-value=0 Score=574.26 Aligned_cols=239 Identities=43% Similarity=0.606 Sum_probs=217.1
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
+||+|||||||+|++++++++++|.+. .++++++||||||||+||.|+++++.+...
T Consensus 1 riV~KFGGtSva~~~~i~~v~~II~~~-~~~~~~vVVVSA~~gvTn~L~~~~~~a~~~~~~~~~~~~~~i~~~h~~~~~~ 79 (298)
T cd04244 1 RLVMKFGGTSVGSAERIRHVADLVGTY-AEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 957984910118999999999998554-6699989997799998899999999985267678999999999999999998
Q ss_pred ---------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf ---------------------------------99889999998312999999999998439986356733245512133
Q gi|254780873|r 61 ---------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSL 107 (411)
Q Consensus 61 ---------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~ 107 (411)
.+++.+|.++|+||+||+.||+.+|+++|+++.++++++++++||++
T Consensus 80 l~~~~~~~~~~~~l~~~~~~l~~~l~~i~~~~e~s~~~~D~ils~GE~lSa~l~a~~L~~~Gi~a~~~d~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHCCEECCCC
T ss_conf 53657689999999999999999998776531178688999998788999999999999679997995479875504787
Q ss_pred CCCCCCCCCCCCC----HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCC
Q ss_conf 5520001236210----033431068058603433355684244306862428999998847345565346144024584
Q gi|254780873|r 108 HGMARICRVDEKK----IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP 183 (411)
Q Consensus 108 ~~~a~~~~~~~~~----l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDP 183 (411)
|+++++.+....+ +...++++.+||+|||||++.+|++||||||||||||+++|++|+|++|+|||||||||||||
T Consensus 160 ~~~a~~~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRgGSDyTAailA~~l~A~~~~IwtDV~Gi~taDP 239 (298)
T cd04244 160 FGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADP 239 (298)
T ss_pred CCCEEECHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCEEECCC
T ss_conf 65400335219999999888750592899938255589876655589947899999999728878999439883260799
Q ss_pred CCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 212344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 184 RIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 184 r~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
|+||+|++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|+
T Consensus 240 r~v~~a~~i~~lsy~EA~ELa~~GakVlHP~ti~p~~~~~IPi~Iknt~~----p~~~GT~Is 298 (298)
T cd04244 240 RIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFN----PEAPGTLIT 298 (298)
T ss_pred CCCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 76888757473289999999967974059999999998799689938999----899981559
No 20
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=100.00 E-value=0 Score=572.01 Aligned_cols=239 Identities=57% Similarity=0.871 Sum_probs=232.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69996085845888999999999999996799889998068730489999999861489988999999831299999999
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMV 82 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a 82 (411)
+||+|||||||+|++++++++++|++..++|++++||||||||+||+|+++++++....+.+++|+++|+||++|+.+|+
T Consensus 1 ~iV~KFGGtSv~~~e~i~~va~iI~~~~~~g~~viVVvSA~gg~Td~L~~l~~~~~~~~~~~~~d~ils~GE~ls~~lla 80 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLA 80 (239)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98998781004999999999999999986798299998489865677999888764772588999999988999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 99984399863567332455121335520001236210033431068058603433355684244306862428999998
Q gi|254780873|r 83 LALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAA 162 (411)
Q Consensus 83 ~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~ 162 (411)
.+|+++|+++.+++++|+++.||++|+++++.+.+.+++.++++++.+||+|||+|.+.+|++||||||||||||+++|+
T Consensus 81 ~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~~~~~l~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tAa~iA~ 160 (239)
T cd04246 81 MALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAA 160 (239)
T ss_pred HHHHHCCCCCEEEEHHHCCEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99997599808857323625304641022233530556665552454479733234489985688179964799999999
Q ss_pred HHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 84734556534614402458421234411056799999998840311013788764331385267611237777765435
Q gi|254780873|r 163 AIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLG 242 (411)
Q Consensus 163 ~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~G 242 (411)
+|+|++++||||||||||+|||++|+|++|++|||+||+||||||||||||+|++||+++||||+|||||+|+ +|
T Consensus 161 ~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~I~nt~~~~-----~G 235 (239)
T cd04246 161 ALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-----PG 235 (239)
T ss_pred HHCCCEEEEEECCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-----CC
T ss_conf 7288889997189725738999687665727527999999986898425899999999869958998489898-----98
Q ss_pred CCCC
Q ss_conf 4545
Q gi|254780873|r 243 TLIC 246 (411)
Q Consensus 243 T~I~ 246 (411)
|+|+
T Consensus 236 T~Is 239 (239)
T cd04246 236 TLIT 239 (239)
T ss_pred CEEC
T ss_conf 7759
No 21
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=100.00 E-value=0 Score=572.07 Aligned_cols=239 Identities=56% Similarity=0.849 Sum_probs=232.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69996085845888999999999999996799889998068730489999999861489988999999831299999999
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMV 82 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a 82 (411)
+||+|||||||+|++++++++++|++..++|++++||||||||+||+|+++++++......+++|.++|+||++|+.+++
T Consensus 1 ~iV~KFGGtSv~~~e~i~~va~iI~~~~~~~~~vvVVvSA~gg~Td~Li~la~~~~~~~~~~e~d~ils~GE~lsa~ll~ 80 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLA 80 (239)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999782013999999999999998986699289997798753688999999870699989998887777999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHH
Q ss_conf 99984399863567332455121335520001236210033431068058603433355684244306862428999998
Q gi|254780873|r 83 LALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAA 162 (411)
Q Consensus 83 ~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~ 162 (411)
.+|++.|+++.+++++++++.||++|+++++.+.+..++.++++++.+||+|||+|.+.+|++||||||||||||+++|+
T Consensus 81 ~~L~~~G~~a~~~~~~~~~i~t~~~~~~a~i~~~~~~~i~~~l~~~~v~Vv~GF~g~~~~g~~ttLGRGGSD~tAai~A~ 160 (239)
T cd04261 81 MALNRLGIKAISLTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAA 160 (239)
T ss_pred HHHHHCCCCCEEEEHHHCCEECCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99997699757968666754315752045568899999986402455589734655478884688279946889999999
Q ss_pred HHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 84734556534614402458421234411056799999998840311013788764331385267611237777765435
Q gi|254780873|r 163 AIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLG 242 (411)
Q Consensus 163 ~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~G 242 (411)
+|+|++|+||||||||||+|||++|+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+|+ +|
T Consensus 161 ~l~A~~v~iwTDVdGi~taDPr~v~~A~~i~~lsy~EA~ela~~GakVlHp~ai~p~~~~~Ipi~i~nt~~p~-----~G 235 (239)
T cd04261 161 ALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-----PG 235 (239)
T ss_pred HCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCC-----CC
T ss_conf 6698889998189832758999688767737707999999996897315899999999869948997089897-----98
Q ss_pred CCCC
Q ss_conf 4545
Q gi|254780873|r 243 TLIC 246 (411)
Q Consensus 243 T~I~ 246 (411)
|+|+
T Consensus 236 T~Is 239 (239)
T cd04261 236 TLIT 239 (239)
T ss_pred CEEC
T ss_conf 8859
No 22
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=100.00 E-value=0 Score=567.32 Aligned_cols=238 Identities=35% Similarity=0.504 Sum_probs=214.9
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC--------------------
Q ss_conf 966999608584588899999999999999679988999806873048999999986148--------------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI-------------------- 60 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~-------------------- 60 (411)
|+ |+|||||||+|++++++++++|++..+ +.+++||||||||+||.|+++++.+...
T Consensus 1 Mk--V~KFGGtSv~~~~~i~~v~~iI~~~~~-~~~~vVVVSA~ggvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~~~i~ 77 (294)
T cd04257 1 MK--VLKFGGTSLANAERIRRVADIILNAAK-QEQVAVVVSAPGKVTDLLLELAELASSGDDAYEDILQELESKHLDLIT 77 (294)
T ss_pred CE--EEEECCCCCCCHHHHHHHHHHHHHHCC-CCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 98--998781115899999999999975324-899899980999867999999999853862689999999999999999
Q ss_pred ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------------------9988999999831299999999999843998635673324551213
Q gi|254780873|r 61 ----------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDS 106 (411)
Q Consensus 61 ----------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~ 106 (411)
.+++.+|.++|+||++|+.+|+.+|+++|+++.+++++++ ++||+
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EECCC
T ss_conf 85350457899999999999999999777641569889999999989899999999999977998299533362-11268
Q ss_pred CCCCCCCCC-CCCCCHHHHH-HHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCC
Q ss_conf 355200012-3621003343-10680586034333556842443068624289999988473455653461440245842
Q gi|254780873|r 107 LHGMARICR-VDEKKIVTHL-KKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPR 184 (411)
Q Consensus 107 ~~~~a~~~~-~~~~~l~~~l-~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr 184 (411)
.|++++++. ....++.+.+ ..+.+||+|||+|.+.+|++||||||||||||+++|++|+|++|+||||||||||||||
T Consensus 157 ~~~~a~~~~~~t~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~TAa~ia~~L~A~~v~IwtDV~Gi~taDPr 236 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPR 236 (294)
T ss_pred CCCCEEECHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCC
T ss_conf 87753566865199999986417978997695256788975134899488999999997299789994288850527997
Q ss_pred CCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 12344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 185 IEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 185 ~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
+||+|++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|+
T Consensus 237 ~v~~a~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~vrnt~~----p~~~GT~IS 294 (294)
T cd04257 237 KVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFN----PEAPGTLIS 294 (294)
T ss_pred CCCCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 6889867160489999999967983159999999998799389938999----899981519
No 23
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=100.00 E-value=0 Score=560.60 Aligned_cols=236 Identities=39% Similarity=0.564 Sum_probs=213.2
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC-----------------------
Q ss_conf 999608584588899999999999999679988999806873048999999986148-----------------------
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI----------------------- 60 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~----------------------- 60 (411)
.|+|||||||+|++++++++++|++. .+.+++||||||||+||+|+++++.+...
T Consensus 2 kV~KFGGtSv~~~~~i~~v~~iI~~~--~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~~~l~~i~~~h~~i~~~L~ 79 (293)
T cd04243 2 KVLKFGGTSVASAERIRRVADIIKSR--ASSPVLVVVSALGGVTNRLVALAELAASGDDAQAIVLQEIRERHLDLIKELL 79 (293)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHC--CCCCEEEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 89987812369999999999999837--7989599981998868999999998843775789999999999999999852
Q ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------------------9988999999831299999999999843998635673324551213355
Q gi|254780873|r 61 -------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHG 109 (411)
Q Consensus 61 -------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~ 109 (411)
.+++.+|.++|+||+||+.+++.+|+++|+++.+++++++ ++||++|+
T Consensus 80 ~~~~~~~~~~~i~~~~~~L~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~-i~td~~~~ 158 (293)
T cd04243 80 SGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFL 158 (293)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EECCCCCC
T ss_conf 71547999999999999999998765422579889999999889899999999999978998099754784-20268875
Q ss_pred CCCCCCC-CCCCHHHHHH-HCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCC
Q ss_conf 2000123-6210033431-0680586034333556842443068624289999988473455653461440245842123
Q gi|254780873|r 110 MARICRV-DEKKIVTHLK-KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEP 187 (411)
Q Consensus 110 ~a~~~~~-~~~~l~~~l~-~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~ 187 (411)
+++++.. ...++...+. ++.+||+|||+|.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||
T Consensus 159 ~a~~~~~~s~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSD~sAaila~~l~A~~v~IwtDV~Gi~taDPr~v~ 238 (293)
T cd04243 159 NAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVP 238 (293)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCCC
T ss_conf 31007764199999986338959997496612799977872798289999999995699889998378840708998788
Q ss_pred CCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 44110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 188 KAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 188 ~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
+|++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|+
T Consensus 239 ~a~~i~~lsy~EA~ELa~~GakVlHp~ti~p~~~~~Ipi~i~nt~~----p~~~GT~Is 293 (293)
T cd04243 239 DARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFN----PEAPGTLIS 293 (293)
T ss_pred CCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 8756481089999999977962059999999998699489937999----899982659
No 24
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=100.00 E-value=0 Score=559.56 Aligned_cols=236 Identities=40% Similarity=0.488 Sum_probs=211.8
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC----------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986148----------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI---------------------- 60 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~---------------------- 60 (411)
++|+|||||||+|++++++++++|++ ++.+++||||||||+||+|+++++.....
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~---~~~~~vVVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKS---DASVRLVVVSASAGVTNLLVALADAAESGEEIESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHC---CCCCEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 98995786544889999999999975---899809999489997499999999874477166899999999999999987
Q ss_pred ------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ------------------------------99889999998312999999999998439986356733245512133552
Q gi|254780873|r 61 ------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGM 110 (411)
Q Consensus 61 ------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~ 110 (411)
.+++.+|.++|+||+||+.+|+.+|+++|+++.+++++++ ++||++|++
T Consensus 78 l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~~da~~~-i~td~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH-EEECCCCCC
T ss_conf 2473889999999999999998655421468888999998888899999999999977998589565790-574686653
Q ss_pred CCCCCCC-CCCH---HHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf 0001236-2100---33431068058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r 111 ARICRVD-EKKI---VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 111 a~~~~~~-~~~l---~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v 186 (411)
++++... ..++ ...+.++.+||+|||+|.+++|++||||||||||||+++|++|+|++|+||||||||||||||+|
T Consensus 157 a~v~~~~~~~~~~~~~~~~~~~~i~Vv~GFig~~~~G~~ttLGRGGSDyTA~~la~~l~A~~v~iwtDV~Gi~taDPr~V 236 (292)
T cd04258 157 AAPDLNALAELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRIC 236 (292)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 23538888999999986533798999358054379997775378961689999999769988999967887875899878
Q ss_pred CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
|+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+ |+.+||+|+
T Consensus 237 ~~A~~i~~lsy~EA~eLa~~GakVlHp~ti~p~~~~~Ipi~I~nt~~----p~~~GT~Is 292 (292)
T cd04258 237 PAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKD----PEAGGTLIT 292 (292)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 98767483699999999977973169999999998699489937899----899982549
No 25
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=100.00 E-value=0 Score=556.55 Aligned_cols=237 Identities=29% Similarity=0.380 Sum_probs=217.2
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC-------CHHHHHHHHHHHHHCC-------------
Q ss_conf 96699960858458889999999999999967998899980687-------3048999999986148-------------
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMS-------GETDRLAELCRQVTSI------------- 60 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~-------g~Td~L~~l~~~~~~~------------- 60 (411)
|+ |+|||||||+|++++++++++|+.. ..+.+||||||| |+||.|+++++.....
T Consensus 1 Mk--V~KFGGtSv~~~~~i~~v~~Ii~~~---~~~~vVVVSA~g~~tn~~~gvTd~L~~~a~~~~~~~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MK--VVKFGGSSLASAEQFQKVKAIVKAD---PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAGEDTESIFEAIVDR 75 (288)
T ss_pred CE--EEEECCCCCCCHHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 98--9988811358999999999999717---898099990898886752147999999999875684599999999999
Q ss_pred -------------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -------------------------------9988999999831299999999999843998635673324551213355
Q gi|254780873|r 61 -------------------------------DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHG 109 (411)
Q Consensus 61 -------------------------------~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~ 109 (411)
...+.+|.++|+||+||+.|++.+|+++|+++.+++++|+++.||++++
T Consensus 76 h~~~~~~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~d~~i~~~~~~~ 155 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLANLDYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPG 155 (288)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEECCCCC
T ss_conf 99999874664779999999999998714468557776873099999999999999968998399500002178447765
Q ss_pred CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCC
Q ss_conf 20001236210033431068058603433355684244306862428999998847345565346144024584212344
Q gi|254780873|r 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKA 189 (411)
Q Consensus 110 ~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a 189 (411)
++++......++.+.++.+.+||+|||||.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+||+|
T Consensus 156 ~a~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGSDySAaiia~~l~A~~v~iwtDV~Gi~taDPr~V~~A 235 (288)
T cd04245 156 NAQILPESYQKIKKLRDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANP 235 (288)
T ss_pred CCEECHHHHHHHHHHHHCCCEEEEEEEEEECCCCCEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCEEEECCCCCCCCC
T ss_conf 30332756999998870598389825777538997643289838999999999758988999547980373799857798
Q ss_pred CEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 190 HLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 190 ~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|.
T Consensus 236 ~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~Ipi~irnt~~----p~~~GT~I~ 288 (288)
T cd04245 236 KPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNH----PEAPGTLIV 288 (288)
T ss_pred EECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCC----CCCCCCEEC
T ss_conf 68773599999999967985158899999998598089937899----999985779
No 26
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=100.00 E-value=0 Score=551.72 Aligned_cols=239 Identities=32% Similarity=0.489 Sum_probs=207.7
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH------------------------
Q ss_conf 69996085845888999999999999996799889998068730489999999861------------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT------------------------ 58 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~------------------------ 58 (411)
++|+|||||||+|++++++++++|++..+.+.+++||||||+|+||.|++++++..
T Consensus 1 ~iV~KFGGTSv~~~~~~~~v~~ii~~~~~~~~~~vvVVSA~~gvTd~L~~~~~~~~~~~~~~~~~~i~~~h~~~~~~l~~ 80 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEV 80 (295)
T ss_pred CEEEEECHHCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98997680105879999999999998874799989997999998368999999875364466999999999999998521
Q ss_pred -----------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf -----------------------489988999999831299999999999843998635673324551213355200012
Q gi|254780873|r 59 -----------------------SIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 (411)
Q Consensus 59 -----------------------~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~ 115 (411)
...+++.+|.++|+||+||+.+|+.+|+++|+++.++|++++.+.+++ ++++....
T Consensus 81 ~~~~~l~~~~~~l~~~l~~i~~~~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ldar~~i~~~~~-~~~~~~~~ 159 (295)
T cd04259 81 DADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPT-LGGETMNY 159 (295)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHHEECCCC-CCCCCHHH
T ss_conf 47789999999999999876640479888999999998999999999999967998379648992000467-67531123
Q ss_pred --------CCCCCHHHHHHH-CCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC
Q ss_conf --------362100334310-68058603433355684244306862428999998847345565346144024584212
Q gi|254780873|r 116 --------VDEKKIVTHLKK-KQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 116 --------~~~~~l~~~l~~-~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v 186 (411)
.....+...+.. ..+||+|||||.+.+|++||||||||||||+++|++|+|++|+||||||||||||||+|
T Consensus 160 ~~~~~~~~~~~~~~~~~l~~~~~v~v~~GFig~~~~G~~tTLGRgGSDyTAa~ia~~l~A~~v~IwtDV~Gi~taDPr~v 239 (295)
T cd04259 160 LSARCESEYADALLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEV 239 (295)
T ss_pred HHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEECCCCCEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCC
T ss_conf 44356564154989987514985999678434569998777258973058999999749987999977776756898768
Q ss_pred CCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 344110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
|+|++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|+
T Consensus 240 ~~A~~i~~lsy~EA~eLa~~GakVlHp~t~~p~~~~~Ipi~Irnt~~----p~~~GT~Is 295 (295)
T cd04259 240 PHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTER----PELSGTLIT 295 (295)
T ss_pred CCCEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCEEEC
T ss_conf 88846573389999999967984168999999998499189928999----999982669
No 27
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=100.00 E-value=0 Score=549.09 Aligned_cols=226 Identities=47% Similarity=0.674 Sum_probs=214.0
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 69996085845888999999999999996799889998068730489999999861489988999999831299999999
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMV 82 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a 82 (411)
++|+|||||||+|++++++++++|++. .++++++||||||+|+||+|++++ +++|+||++|+.||+
T Consensus 1 ~~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~~~vVVvSA~~g~Td~L~~~a-------------~ils~GE~lSa~lla 66 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA-------------LLLSFGERLSARLLA 66 (227)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHH-HCCCCEEEEECCCCCCHHHHHHHH-------------HHHHHHHHHHHHHHH
T ss_conf 989967830179999999999999865-438988999738843289999999-------------999299999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH-CCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 999843998635673324551213355200012362100334310-6805860343335568424430686242899999
Q gi|254780873|r 83 LALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKK-KQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIA 161 (411)
Q Consensus 83 ~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~-~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia 161 (411)
.+|+++|+++.+++++|+++.+++.|.++.+.+...+++.+.+.+ +.+||+|||+|.+.+|++||||||||||||+++|
T Consensus 67 ~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~Vv~GF~g~~~~G~~tTLGRGGSD~TA~~lA 146 (227)
T cd04234 67 AALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALA 146 (227)
T ss_pred HHHHHCCCCEEEECHHHCEEECCCCCCCEEEHHHCHHHHHHHHHHCCCEEEECCEEEECCCCCEEEECCCCHHHHHHHHH
T ss_conf 99997899719964157206416876520645428999999997389679962604540588468838885678999999
Q ss_pred HHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
Q ss_conf 88473455653461440245842123441105679999999884031101378876433138526761123777776543
Q gi|254780873|r 162 AAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241 (411)
Q Consensus 162 ~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~ 241 (411)
++|+|++|+||||||||||+|||++|+|++|++|||+||+||||||||||||+|++|+++++|||+|||||+| +.+
T Consensus 147 ~~l~A~~~~I~TDVdGi~taDPr~v~~A~~i~~lsy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~i~nt~~p----~~~ 222 (227)
T cd04234 147 AALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNP----EAP 222 (227)
T ss_pred HHHCCHHHEEEECCCEEECCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCEEEEECCCCC----CCC
T ss_conf 9818602222126870472799747886240441999999999779741699999999986983999289999----999
Q ss_pred CCCCC
Q ss_conf 54545
Q gi|254780873|r 242 GTLIC 246 (411)
Q Consensus 242 GT~I~ 246 (411)
||+|+
T Consensus 223 GT~Is 227 (227)
T cd04234 223 GTLIT 227 (227)
T ss_pred CEEEC
T ss_conf 81769
No 28
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=100.00 E-value=0 Score=539.44 Aligned_cols=238 Identities=29% Similarity=0.404 Sum_probs=200.9
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCC------CHHHHHHHHHHHHHC-----------------
Q ss_conf 699960858458889999999999999967998899980687------304899999998614-----------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMS------GETDRLAELCRQVTS----------------- 59 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~------g~Td~L~~l~~~~~~----------------- 59 (411)
+||+|||||||++. .++++++|.+...++++++||||||+ |+||+|+++++.+..
T Consensus 2 ~iV~KFGGTSva~~--~~~~~~~I~~~~~~~~~vvVVvSA~~~~~~~~g~T~~L~~~~~~a~~~~~~~~~~~~~~i~~~h 79 (306)
T cd04247 2 WVVQKFGGTSVGKF--PDNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQEKAFHDIVEDIRSDH 79 (306)
T ss_pred CEEEEECHHHHHHH--HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 89997791408879--9999999987762799889998899798775686999999999887445367999999999999
Q ss_pred ---------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf ---------------------------------------89988999999831299999999999843998635673324
Q gi|254780873|r 60 ---------------------------------------IDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQI 100 (411)
Q Consensus 60 ---------------------------------------~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~ 100 (411)
..+++.+|.++|+||+||++||+.||+++|+++.++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~l~~~i~~~~~~L~~~l~~~~~l~e~~~~~~d~ils~GE~lSa~l~a~~L~~~Gi~a~~lDa~~~ 159 (306)
T cd04247 80 LAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHI 159 (306)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECHHHH
T ss_conf 99999973087889999999999999999999988761448878888998212789999999999977999499648995
Q ss_pred CCCCCCCCCCCCCC--CCCCCCHHHHHH--HCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHH
Q ss_conf 55121335520001--236210033431--06805860343335568424430686242899999884734556534614
Q gi|254780873|r 101 PIMTDSLHGMARIC--RVDEKKIVTHLK--KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVC 176 (411)
Q Consensus 101 ~i~t~~~~~~a~~~--~~~~~~l~~~l~--~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~ 176 (411)
+.++..+...... ......+.+.+. ++.|||+|||+|.+++|++||||||||||||+++|++|+|++|+||||||
T Consensus 160 -i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G~~tTLGRgGSDySAaila~~l~A~~v~IwTDV~ 238 (306)
T cd04247 160 -VDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVD 238 (306)
T ss_pred -CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCEEECCCCCEEECCCCCHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf -1366763545505689999999998774169748960412546999877606897079999999976977899997787
Q ss_pred HHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 40245842123441105679999999884031101378876433138526761123777776543545454
Q gi|254780873|r 177 GIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICS 247 (411)
Q Consensus 177 Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~ 247 (411)
||||||||+||+|++|++|||+||+||||||||||||+|++|++++||||+|||||+ |+.+||+|.+
T Consensus 239 Gi~taDPr~V~~A~~i~~lsy~EA~eLa~~GakVlHP~ti~P~~~~~IPi~Irnt~~----P~~~GT~I~~ 305 (306)
T cd04247 239 GIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVEN----PRGEGTVIYP 305 (306)
T ss_pred CCCCCCCCCCCCCEECCEECHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEECCCCC----CCCCCCEECC
T ss_conf 545479875789836572189999999967973159899999998799489818999----8999736568
No 29
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=100.00 E-value=0 Score=500.77 Aligned_cols=230 Identities=21% Similarity=0.236 Sum_probs=183.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC------------------------
Q ss_conf 99960858458889999999999999967998899980687304899999998614------------------------
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS------------------------ 59 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~------------------------ 59 (411)
.|+|||||||++++++++++.++.. ....+.+||||||||+||.|+++.+....
T Consensus 2 kV~KFGGtSva~~~~i~~~i~~~~~--~~~~~~vVVVSA~~gvTn~Ll~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLDNIILKPD--SDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVDADEAWREALSALKQAM 79 (304)
T ss_pred EEEEECCCCCCCHHHHHHHHHCCCC--CCCCCEEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7986773332589999987700544--56788089994999970899987752020368998750478999999999999
Q ss_pred -----------------------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -----------------------------------------------899889999998312999999999998439986
Q gi|254780873|r 60 -----------------------------------------------IDNARERDVVISTGEQVSSGLMVLALQSLGIQA 92 (411)
Q Consensus 60 -----------------------------------------------~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a 92 (411)
...++.+|.++|+||++|+.+++.+|+++|++|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~e~~~~~~d~l~s~GE~~Sa~l~a~~l~~~g~~a 159 (304)
T cd04248 80 LKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNA 159 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 99999998520017778999999999999999999988743732076662568999999749989999999999779972
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHH
Q ss_conf 35673324551213355200012362100334310680586034333556842443068624289999988473455653
Q gi|254780873|r 93 ISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIY 172 (411)
Q Consensus 93 ~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~ 172 (411)
.+++...+ .+..... +.+.-.+.+.+....+.+||+||| +.+.+|++||||||||||||+++|++|+|++++||
T Consensus 160 ~~~d~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~v~Vv~GF-~~~~~G~~tTLGRgGSDySAailA~~l~A~~~~IW 233 (304)
T cd04248 160 RFVDLSGW---RDSGDMT--LDERISEAFRDIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIH 233 (304)
T ss_pred EEEECCCC---CCCCCCC--HHHHHHHHHHHCCCCCCEEEECCC-CCCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEEE
T ss_conf 99714015---4656555--789999999722657826885772-67899835650799717899999997699989998
Q ss_pred CCHHHHEECCCCCCCC--CCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 4614402458421234--4110567999999988403110137887643313852676112377777654354545
Q gi|254780873|r 173 TDVCGIYTTDPRIEPK--AHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 173 tdV~Gi~taDPr~v~~--a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
|||+ |||||||+||+ |++|++|||+||+||||||||||||+|++|+++++|||+|||||+ |+.+||+|+
T Consensus 234 tDV~-v~tADPr~V~~~~a~~i~~lSy~EA~ELayfGAkVlHP~Ti~P~~~~~IPi~IkNt~~----P~~~GT~Is 304 (304)
T cd04248 234 KEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFE----PDHPGTLIT 304 (304)
T ss_pred ECCC-EECCCCCCCCCCCCEEECCCCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEECCCC----CCCCCCEEC
T ss_conf 5066-6168979578776636064799999999977972159899999998699889806899----899983439
No 30
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=0 Score=390.57 Aligned_cols=240 Identities=32% Similarity=0.450 Sum_probs=220.9
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
Q ss_conf 9960858458889999999999999967998899980687304899999998614----899889999998312999999
Q gi|254780873|r 5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS----IDNARERDVVISTGEQVSSGL 80 (411)
Q Consensus 5 V~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~----~~~~~~~d~i~s~GE~~s~~l 80 (411)
|+|||||||++.+++++++++|....+.|+++++|+||++++||.|.++..+... ..+.++.+.++++||.++..+
T Consensus 1 ViK~GGssl~~~~~~~~~~~~i~~l~~~g~~~vvV~sa~~~it~~l~~~~~~~~~~~~~~~t~~~~~~i~~~g~~~~~~~ 80 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLL 80 (248)
T ss_pred CEEECHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99889136069999999999999999789998999698445329999865354331367899899999999999999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHH
Q ss_conf 99999843998635673324551213355200012362100334310680586034333556842443068624289999
Q gi|254780873|r 81 MVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAI 160 (411)
Q Consensus 81 ~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~i 160 (411)
++.+|++.|+++.++++++.++.+.+.+..+++...+.+.+.++++.+.+||++||.+.+ +++++||+||||||+|+++
T Consensus 81 l~~~L~~~g~~a~~l~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~ipVi~g~~~~~-~~~~~~l~~~~sD~~Aa~l 159 (248)
T cd02115 81 IAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTD-EKETGTLGRGGSDSTAALL 159 (248)
T ss_pred HHHHHHHCCCCEEEEEEEECCEECCCCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCCCC-CCCCCEECCCCCCHHHHHH
T ss_conf 999998569981698655323313664443210226899999877416766813634555-6777633078878999999
Q ss_pred HHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC----
Q ss_conf 9884734556534614402458421234411056799999998840311013788764331385267611237777----
Q gi|254780873|r 161 AAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHG---- 236 (411)
Q Consensus 161 a~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~---- 236 (411)
|.+|+|++++|||||||||++|||++|+|++|+++||+||.||+++|++|+||+|+.|+++++||++|+|+++|..
T Consensus 160 A~~l~A~~lii~TDV~Gv~~~dp~~~~~a~~i~~ls~~ea~el~~~G~~v~~~~a~~~a~~~gi~v~I~n~~~~~~lelf 239 (248)
T cd02115 160 AAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALF 239 (248)
T ss_pred HHHHCCCHHHHEECCCCCEECCCCCCCCCEECCCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHC
T ss_conf 99949665531045786161899868867588653899999998559967489999999987997999139997533411
Q ss_pred CCCCCCCCC
Q ss_conf 765435454
Q gi|254780873|r 237 QQEQLGTLI 245 (411)
Q Consensus 237 ~~~~~GT~I 245 (411)
.++..||+|
T Consensus 240 ~~~~~GTlI 248 (248)
T cd02115 240 TPDGGGTLI 248 (248)
T ss_pred CCCCCCCCC
T ss_conf 799996819
No 31
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative; InterPro: IPR011819 This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from Escherichia coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~100 amino acids in between..
Probab=100.00 E-value=0 Score=387.93 Aligned_cols=292 Identities=30% Similarity=0.451 Sum_probs=230.4
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHH-------------------------
Q ss_conf 6999608584588899999999999999679988999806873048999999986-------------------------
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQV------------------------- 57 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~------------------------- 57 (411)
.+|+|||||||.+. ++...+.++... +..+++|||||+.|+||.|+++++.+
T Consensus 1 ~iV~KFGGsSvr~~--F~eA~~L~~~L~-E~~~v~VVVSALkGiTD~L~~ya~t~D~~~~~~i~~~y~~f~~~~gvd~~~ 77 (341)
T TIGR02078 1 MIVVKFGGSSVRYD--FEEALELVKSLS-EEKEVVVVVSALKGITDELIRYANTFDKKAAVKIEEIYVEFAKELGVDLNI 77 (341)
T ss_pred CEEEEECCCCHHHH--HHHHHHHHHHHC-CCCCEEEEEECCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHH
T ss_conf 96898568413666--899999999851-698689998534442579998731104688999999999877750886223
Q ss_pred ------------HCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CC
Q ss_conf ------------14899-88999999831299999999999843998635673324551213355200012362----10
Q gi|254780873|r 58 ------------TSIDN-ARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDE----KK 120 (411)
Q Consensus 58 ------------~~~~~-~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~----~~ 120 (411)
...|. ..=+|+|+|+||++||.++|.-|+=.++++..+++||+ +...++|||+.++-... ..
T Consensus 78 l~~~l~~~~n~~~dlP~keAL~D~I~S~GE~lSA~ifaeGL~~L~i~g~~v~p~d~-~~A~G~FGnafidik~Sk~~~k~ 156 (341)
T TIGR02078 78 LSPYLKELFNPKPDLPPKEALRDYILSLGELLSAVIFAEGLKLLGINGKVVDPWDL-LVAKGEFGNAFIDIKKSKRNAKI 156 (341)
T ss_pred HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEEECCHHH-EEEECCCCCEEEEHHHHHHHHHH
T ss_conf 34678876236778781122356677775789999997013531203227652666-27743646547746465557778
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHH
Q ss_conf 03343106805860343335568424430686242899999884734556534614402458421234411056799999
Q gi|254780873|r 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200 (411)
Q Consensus 121 l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea 200 (411)
+.+.+++|.|||+|||+| |-||.-.|||||||||||+.+|..++|+.+-|..||.||||||||+||.||+|+++||+|+
T Consensus 157 ~~~~l~~G~iPvipGF~g-nlnGyrvTlGRGGSDYSAvalg~l~~s~~v~IMSdVEGIfTADPKLvPsArLIpY~SY~Ei 235 (341)
T TIGR02078 157 LYEVLESGKIPVIPGFYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEI 235 (341)
T ss_pred HHHHHHCCCEEEECCCCC-CCCCEEEEECCCCCHHHHHHHHHHHCCEEEEEEECCCEEEECCCCCCCCHHCCCCCCHHHH
T ss_conf 898886583022146206-8884489864786227999999875122689973456004358663750010333347799
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCHHCCCCCC---
Q ss_conf 99884031101378876433138526761123777776543545454210122231011123466--2000127750---
Q gi|254780873|r 201 LEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKD--EAQISLRRLR--- 275 (411)
Q Consensus 201 ~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~--i~~Iti~~~~--- 275 (411)
.==|-+|+|.||-+|++|+.+++||+...-|-| ..-||+|++... .-++ +++++. .+-+.+-++.
T Consensus 236 ~iAaK~GMkAl~wkA~~l~~e~~ip~lfGrt~d-----wr~GT~~s~~~s---~~Pl--~~y~~~~D~AEl~vv~~~~~i 305 (341)
T TIGR02078 236 LIAAKLGMKALQWKAADLAKEYKIPVLFGRTRD-----WRMGTVVSNRSS---GMPL--MVYKDGEDFAELLVVNVEREI 305 (341)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC-----CEEEEEEECCCC---CCCE--EEEECCCCEEEEEEEEEEECC
T ss_conf 997452057776652000157543587415466-----401267762658---8877--897046555778998520012
Q ss_pred CCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 0048410001455412850111234432222333101212302477668878988
Q gi|254780873|r 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 276 ~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
..+|| .+.+ | +. .=..+.+++++.-++.+.|++.
T Consensus 306 ~y~g~-----~v~e--------------E-g~-f~~~~~vp~~~~~~~irelHr~ 339 (341)
T TIGR02078 306 SYPGY-----LVIE--------------E-GE-FWKLYKVPKEDGIEIIRELHRK 339 (341)
T ss_pred CCCCE-----EEEE--------------C-CC-CEEEEEECHHHHHHHHHHHHHH
T ss_conf 55753-----7997--------------3-77-6379982503468999998664
No 32
>PRK07431 aspartate kinase; Provisional
Probab=100.00 E-value=6.6e-39 Score=281.84 Aligned_cols=201 Identities=30% Similarity=0.437 Sum_probs=174.6
Q ss_pred HHHHHHHHHHHCCCEEEEECCCCCC--------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHC
Q ss_conf 1378876433138526761123777--------------------77654354545421012223101112346620001
Q gi|254780873|r 211 MQVRSVELAMLYKMCLFVRSSFEDH--------------------GQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQIS 270 (411)
Q Consensus 211 lhp~~~~~~~~~~ipi~i~ntf~~~--------------------~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~It 270 (411)
+-.+-+.-+-+.||+|+.-+|-+-. ...+..--.+.+.....+.|.|+||++++|++.||
T Consensus 364 VAarmF~aLa~~gINI~mIStSEikIS~vI~~~d~~kAv~alH~~F~Le~~~~~~~~~~~~~~~p~V~Gva~d~~qakit 443 (594)
T PRK07431 364 IAAQMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKAIRALSEAFELEDSQIFINPPNSGEDEPEVRGVALDRNQAQLS 443 (594)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEE
T ss_conf 99999999987899879998257379999808899999999998718776755568887767898422566047710799
Q ss_pred CCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCC---CCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEE
Q ss_conf 277500048410001455412850111234432---22233310121230247766887898886059615897489169
Q gi|254780873|r 271 LRRLRDHPGISASIFSPLAEAHINIDMIIQNVS---EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVK 347 (411)
Q Consensus 271 i~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s---~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ 347 (411)
+.++||+||.+++||+.|++.+||||||.|+.+ .....+||+||++++|++++..+|++..+++++..+..++++++
T Consensus 444 i~~vpD~PGiAa~iF~~la~~~inVDMIvQn~~~~~~~~~~tdisFTv~~~d~~~a~~~l~~~~~~~~~~~v~~~~~iaK 523 (594)
T PRK07431 444 IRNVPDRPGMAASIFSALAEANISVDMIVQSQRCRIDGVPTRDISFTVPKDDREAAQKALAPLAAKLPGAEVEDGSAIAK 523 (594)
T ss_pred EECCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEE
T ss_conf 73799997479999899987697278998567544689985118997158899999999999987659866886798899
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 9996678667855799999999867982999970784899997088999999999987097779
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
||+||.||+++||+++|+|.+|+++||||.||++||++|||+|++++.++|+++||++|+|+-.
T Consensus 524 vSiVG~GM~s~~GvAa~mF~~La~~~INI~mIsTSEIkIS~vI~~~~~e~AvralH~aF~L~~~ 587 (594)
T PRK07431 524 VSIVGAGMPGTPGVAARMFRALANAGINIEMIATSEIRTSCVVAEDDGVKALQAVHAAFGLAGE 587 (594)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCCCCC
T ss_conf 9898877578803999999999878998569983683799997288999999999997199999
No 33
>pfam00696 AA_kinase Amino acid kinase family. This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4. Acetylglutamate kinase EC:2.7.2.8. Glutamate 5-kinase EC:2.7.2.11. Uridylate kinase EC:2.7.4.-. Carbamate kinase EC:2.7.2.2.
Probab=100.00 E-value=2.9e-39 Score=284.29 Aligned_cols=222 Identities=33% Similarity=0.378 Sum_probs=175.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH---H
Q ss_conf 6699960858458889999999999999967998899980687304899999998614899889999998312999---9
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVS---S 78 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s---~ 78 (411)
+++|.|||||++.+.+++++++++|++..+.|+++ ||||+.|+.|+.+..............+....+...+... .
T Consensus 1 k~iViK~GGs~l~~~~~i~~~~~~I~~l~~~g~~v-vvV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (230)
T pfam00696 1 KRIVIKLGGSSLTDEDAIKRIAEEIALLSELGIKV-VVVSGGGGFTDKLLAAYGIAEKIGLRVTAGATGLIIEAALAGLL 79 (230)
T ss_pred CEEEEEECHHHCCCHHHHHHHHHHHHHHHHCCCEE-EEEECCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 90999958567789899999999999999689949-99979858887999981777657515669999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf 99999998439986356733245512133552000123621003343106805860343335568424430686242899
Q gi|254780873|r 79 GLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAV 158 (411)
Q Consensus 79 ~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~ 158 (411)
..+...+...|+++..+...+. .+..+.....+.+.+.++++++.+||++||.|.+..+.+++|+||+||++|+
T Consensus 80 ~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~i~~~l~~~~ipVi~g~~~~~~~~~~~~l~~~~sD~~Aa 153 (230)
T pfam00696 80 DIVVSAGERLGARAVALLLSDG------GIGAVRLDANDTEAIKELLEEGVVPVITGFGGENDTGETTTLGRGSSDTLAA 153 (230)
T ss_pred HHHHHHHHHCCCHHHHCCCCCC------CCCEEEEEHHHHHHHHHHHHCCCCEEECCCCEECCCCCCCCCCCCCCHHHHH
T ss_conf 9999999982973013256513------4551688452599999999769925524764247988723134877108899
Q ss_pred HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH-----HCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 9998847345565346144024584212344110567999999988-----40311013788764331385267611
Q gi|254780873|r 159 AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS-----SLGAKVMQVRSVELAMLYKMCLFVRS 230 (411)
Q Consensus 159 ~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa-----~~Gakvlhp~~~~~~~~~~ipi~i~n 230 (411)
++|.+++|+.|.+|||||||||+|||..|+|++|++|+|+||.+|+ ++|+++.||.|++++++.++|++|.|
T Consensus 154 ~lA~~l~A~~lii~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~i~v~I~n 230 (230)
T pfam00696 154 LLAEALGADKLIILTDVDGVYTADPRKVPDAKLIPELSYDEAEELLAAGDGTGGMKVKDPAALKAARRGGIPVVIVN 230 (230)
T ss_pred HHHHHCCCCEEEEEECCCCEECCCCCCCCCCEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEC
T ss_conf 99985598678986157813637998799873855767999998876597849969999999999997898699949
No 34
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=2.1e-37 Score=271.70 Aligned_cols=219 Identities=28% Similarity=0.382 Sum_probs=176.5
Q ss_pred CEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6699960858458-------889999999999999967998899980687304899999998614899889999998312
Q gi|254780873|r 2 ARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGE 74 (411)
Q Consensus 2 ~~iV~KfGGtSv~-------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE 74 (411)
|+||.|+|||++. |.+++++++++|++..++|+++++|||+ |-+-+-.. +.+... .....|.+-..+.
T Consensus 1 kRIViKiGGs~L~~~~~~~ld~~~I~~la~~I~~l~~~G~eVviVvgg--G~i~rg~~-~~~~~~--~~~~~d~~g~lat 75 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG--GNIFRGAS-AAEAGM--DRATADYMGMLAT 75 (231)
T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--CCHHCCHH-HHHCCC--CCCHHHHHHHHHH
T ss_conf 959999516660789998859999999999999999779869999817--73012422-453466--6351889999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999843998635673324551213355200012362100334310680586034333556842443068624
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSD 154 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD 154 (411)
++++.++..+|++.|+++..+.+++.+..++. .+.+++.+.|+++.|||+.|+.| +...|| |
T Consensus 76 ~~n~~ll~~al~~~g~~~~~~t~~~~~~~~~~---------~~~~~~~~~L~~g~VvI~~g~~g---~~~~tt------D 137 (231)
T cd04254 76 VINALALQDALESLGVKTRVMSAIPMQGVAEP---------YIRRRAIRHLEKGRVVIFAGGTG---NPFFTT------D 137 (231)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCCC---------CCHHHHHHHHHCCCEEEEECCCC---CCCCCC------H
T ss_conf 99999999999867998799742234422231---------12899999973598899966757---876551------1
Q ss_pred HHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28999998847345565346144024584212344110567999999988403110137887643313852676112377
Q gi|254780873|r 155 TSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFED 234 (411)
Q Consensus 155 ~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~ 234 (411)
++|+++|..++||.|.+|||||||||+|||++|+|++++++||+|+.++ |+||+||+|+++|++++||++|.|.++|
T Consensus 138 ~~aa~~A~~~~ad~~~~~tdvdgvy~~dP~~~~~a~~~~~is~~e~~~~---~~~v~d~~A~~~a~~~~i~~~v~~~~~~ 214 (231)
T cd04254 138 TAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDNNLPIVVFNINEP 214 (231)
T ss_pred HHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHC---CCCCCCHHHHHHHHHCCCCEEEECCCCC
T ss_conf 7999999872998899976316622689655755554030569999847---7662439999999986998899739995
Q ss_pred CC-----CCCCCCCCCC
Q ss_conf 77-----7654354545
Q gi|254780873|r 235 HG-----QQEQLGTLIC 246 (411)
Q Consensus 235 ~~-----~~~~~GT~I~ 246 (411)
.. ..|..||+|+
T Consensus 215 ~~I~k~l~Ge~~GTlI~ 231 (231)
T cd04254 215 GNLLKAVKGEGVGTLIS 231 (231)
T ss_pred CHHHHHHCCCCCCEEEC
T ss_conf 26999977998864759
No 35
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.7e-31 Score=231.97 Aligned_cols=219 Identities=26% Similarity=0.346 Sum_probs=169.1
Q ss_pred CEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6699960858458-------889999999999999967998899980687304899999998614899889999998312
Q gi|254780873|r 2 ARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGE 74 (411)
Q Consensus 2 ~~iV~KfGGtSv~-------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE 74 (411)
|+||.|+|||++. +.++++++++.|.+..++|+++++|+| ||.+-+-.... ....+.++.|.+-..+.
T Consensus 1 kRIViKiG~s~L~~~~~~~l~~~~i~~la~~I~~l~~~G~evvlVsS--Gg~~a~~~~~~---~~~~~~~~~d~~g~~at 75 (231)
T PRK00358 1 KRVLLKLSGEALAGDEGFGIDPDVLDRIAQEIKELVELGVEVAVVIG--GGNIFRGAAAA---KAGMDRVTADYMGMLAT 75 (231)
T ss_pred CEEEEEECHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCHHHCCHHHH---HCCCCCCHHHHHHHHHH
T ss_conf 95999965565038999983999999999999999977996999983--87331526477---45886546999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999843998635673324551213355200012362100334310680586034333556842443068624
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSD 154 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD 154 (411)
++++.++..+|.+.++++.....++.....+ .....+..+.|+.+.|||+.+..+ ++. .+| |
T Consensus 76 ~~n~~ll~~~l~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~g~v~Iv~~~~~-~~~--~~n------D 137 (231)
T PRK00358 76 VMNALALQDALERAGVNTRVQSAIPMNQVAE---------PYIRRRAIRHLEKGRVVIFAAGTG-NPF--FTT------D 137 (231)
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---------CCCHHHHHHHHHCCEEEEEECCCC-CCC--CCC------H
T ss_conf 9999999999973697326751223443234---------010899998753680799966756-878--771------0
Q ss_pred HHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCC
Q ss_conf 28999998847345565346144024584212344110567999999988403110137887643313852676112377
Q gi|254780873|r 155 TSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFED 234 (411)
Q Consensus 155 ~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~ 234 (411)
+.|+++|..++||.|.|.|||||+||+|||..|+|++|++++|+|+.+ .|+++++++|++.|+++|||++|.|-.+|
T Consensus 138 ~laa~vA~~i~AD~liilTDVDGlYt~dP~~~~dAk~I~~Is~~e~~~---~g~~~~~~~Aa~~a~~~Gi~~~I~ng~~~ 214 (231)
T PRK00358 138 TAAALRAEEIGADVLLKATKVDGVYDADPKKDPDAKKYDTLTYDEVLD---KGLKVMDPTAISLARDNKIPIIVFNGNKP 214 (231)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCEECCCCCCCCCCEECCCCCHHHHHH---CCCCHHHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 899999986599889886223741667976699866825457999986---77542789999999987998999879993
Q ss_pred CC-----CCCCCCCCCC
Q ss_conf 77-----7654354545
Q gi|254780873|r 235 HG-----QQEQLGTLIC 246 (411)
Q Consensus 235 ~~-----~~~~~GT~I~ 246 (411)
.. +.|..||+|+
T Consensus 215 ~~i~~il~Ge~vGTlI~ 231 (231)
T PRK00358 215 GNLKRVVKGENIGTLVS 231 (231)
T ss_pred CHHHHHHCCCCCCEEEC
T ss_conf 48999977999874749
No 36
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=6.6e-32 Score=234.71 Aligned_cols=218 Identities=28% Similarity=0.380 Sum_probs=171.5
Q ss_pred EEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 699960858458------88999999999999996799889998068730489999999861489988999999831299
Q gi|254780873|r 3 RIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQV 76 (411)
Q Consensus 3 ~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~ 76 (411)
|||.|||||++. +.++++++++.|.+..++|+++++|+|+ |.+...+..+..+. ...+.|.+...+..+
T Consensus 1 RIViKiG~s~lt~~~~~l~~~~i~~la~~i~~l~~~g~evilV~s~-G~~a~g~~~~~~~~----~~~~~~~~~~~a~~~ 75 (229)
T cd04239 1 RIVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIAAARGM----PRATADYIGMLATVM 75 (229)
T ss_pred CEEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-CCCCCCHHHHHCCC----CCCHHHHHHHHHHHH
T ss_conf 9899976577018999919999999999999999779979999899-73446643441566----713599999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244306862428
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTS 156 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~t 156 (411)
++.+|..+|...|+++....+.+... . ....+.+++.+.++.+.|||+.||.+.. ..+ .|+.
T Consensus 76 ~~~ll~~~l~~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~l~~g~ipV~~~~~~~~---~~d------nD~l 137 (229)
T cd04239 76 NALALQDALEKLGVKTRVMSAIPMQG--V-------AEPYIRRRAIRHLEKGRIVIFGGGTGNP---GFT------TDTA 137 (229)
T ss_pred HHHHHHHHHHHCCCCEEEECHHHCCC--C-------HHHHHHHHHHHHHHCCCEEEEECCCCCC---CCC------CHHH
T ss_conf 99999999986799789831776033--0-------1022399999998539779983655788---765------0089
Q ss_pred HHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC
Q ss_conf 99999884734556534614402458421234411056799999998840311013788764331385267611237777
Q gi|254780873|r 157 AVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHG 236 (411)
Q Consensus 157 A~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~ 236 (411)
|+++|.+++||.|.|+|||||+||+|||..|+|++|+++||+|+.++ |.++++++|++.|+++|+|++|.|.++|..
T Consensus 138 Aa~vA~~v~AD~lIilTDVDGlY~~dP~~~~~Ak~I~~is~~e~~~~---g~~~~k~~Aa~~a~~~Gi~~~I~ng~~~~~ 214 (229)
T cd04239 138 AALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDATALTLCRRNKIPIIVFNGLKPGN 214 (229)
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCEECCCCCHHHHHHC---CCCEECHHHHHHHHHCCCCEEEECCCCCCH
T ss_conf 99999972998898611238617889887998748771289999875---987444999999998799699977999338
Q ss_pred -----CCCCCCCCCC
Q ss_conf -----7654354545
Q gi|254780873|r 237 -----QQEQLGTLIC 246 (411)
Q Consensus 237 -----~~~~~GT~I~ 246 (411)
+.+..||+|.
T Consensus 215 i~~~l~G~~vGTlI~ 229 (229)
T cd04239 215 LLRALKGEHVGTLIE 229 (229)
T ss_pred HHHHHCCCCCCEEEC
T ss_conf 999977999981659
No 37
>TIGR02075 pyrH_bact uridylate kinase; InterPro: IPR015963 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the bacterial proteins..
Probab=99.96 E-value=7.5e-29 Score=214.14 Aligned_cols=217 Identities=28% Similarity=0.403 Sum_probs=179.7
Q ss_pred CEEEEEECCCCCC--------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHH--HHH
Q ss_conf 6699960858458--------889999999999999967998899980687304899999998614899889999--998
Q gi|254780873|r 2 ARIVMKFGGTSVA--------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDV--VIS 71 (411)
Q Consensus 2 ~~iV~KfGGtSv~--------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~--i~s 71 (411)
|||++|+-|-|+. |..++.++|++|+.-.+.|.+|-+|+. || |-.....-+-...+. -+=|+ +||
T Consensus 2 kRvLlKLSGEaL~g~~~~f~ID~~~l~~iA~eik~~~~~G~evgIViG--GG--NIfRG~~~~~~Gi~R-~~aDymGMLA 76 (236)
T TIGR02075 2 KRVLLKLSGEALAGKDSQFGIDPKRLNRIANEIKEVVKKGIEVGIVIG--GG--NIFRGKSAAELGIDR-VSADYMGMLA 76 (236)
T ss_pred CEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CH--HHHHHHHHHHCCCCE-EECCCCCHHH
T ss_conf 648999610432478888642689999999999999867948999977--82--788778898748961-1143230589
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCCC-CCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 3129999999999984399863567-3324551213355200012-3621003343106805860343335568424430
Q gi|254780873|r 72 TGEQVSSGLMVLALQSLGIQAISLQ-GWQIPIMTDSLHGMARICR-VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLG 149 (411)
Q Consensus 72 ~GE~~s~~l~a~~l~~~G~~a~~l~-~~~~~i~t~~~~~~a~~~~-~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlg 149 (411)
+ .+++..|...|...|++++.+. +-+.+- .+++ ...++..++|++++|+|+.| .+.+...||
T Consensus 77 T--viNglaL~~~L~~~g~~~~V~Sfai~~~~---------~i~E~Y~~~~a~~~le~g~vVIF~g---GtGnPfFTT-- 140 (236)
T TIGR02075 77 T--VINGLALKDALEKLGLKTRVLSFAISMPK---------QICESYIRRKAIKHLEKGKVVIFSG---GTGNPFFTT-- 140 (236)
T ss_pred H--HHHHHHHHHHHHHCCCCEEEEEEEEECCC---------CCCCCCCHHHHHHHHHCCCEEEEEC---CCCCCCCHH--
T ss_conf 9--99999999888736995689877753586---------4132322789999853597899955---898696321--
Q ss_pred CCCCCHHHHHHHHHHCHHHHHHHCC-HHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 6862428999998847345565346-144024584212344110567999999988403110137887643313852676
Q gi|254780873|r 150 RGGSDTSAVAIAAAIKADRCDIYTD-VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFV 228 (411)
Q Consensus 150 RGGSD~tA~~ia~~l~A~~~~i~td-V~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i 228 (411)
|+.|++.|+.++||.+.+-|+ ||||||+|||+.|+|+++++|||+||++. +-||+.-.|+.+|+++|+||+|
T Consensus 141 ----DtaA~LRAiEi~aD~~Lkgt~GVDGVY~~DPkknk~A~~y~~itY~~~L~~---~L~VMD~TA~~La~dnnlpi~V 213 (236)
T TIGR02075 141 ----DTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYDTITYNEVLKK---NLKVMDLTAFSLAKDNNLPIVV 213 (236)
T ss_pred ----HHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCCEECCCCCHHHHHHC---CCCHHHHHHHHHHHHCCCCEEE
T ss_conf ----158887666431347998104888023587885987523166798999861---4711358999999877897599
Q ss_pred ECCCCCCC-----CCCCCCCCCC
Q ss_conf 11237777-----7654354545
Q gi|254780873|r 229 RSSFEDHG-----QQEQLGTLIC 246 (411)
Q Consensus 229 ~ntf~~~~-----~~~~~GT~I~ 246 (411)
-|-.+|++ ..+..||+|+
T Consensus 214 FnI~~~g~l~~vi~g~~~gTlv~ 236 (236)
T TIGR02075 214 FNIDEPGALKKVILGKGIGTLVS 236 (236)
T ss_pred ECCCCCCHHHHHHCCCCCEEEEC
T ss_conf 66665301645322784457528
No 38
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=6.7e-29 Score=214.48 Aligned_cols=231 Identities=23% Similarity=0.372 Sum_probs=173.6
Q ss_pred CEEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf 6699960858458------8899999999999999679988999806873048999999986148998899999983129
Q gi|254780873|r 2 ARIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQ 75 (411)
Q Consensus 2 ~~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~ 75 (411)
|+||.|+||+++. +.+++.++++.|.+..++|+++++|.|...+....++.+.+ ...+..+++.+.+.|+.
T Consensus 10 krIViKiG~s~lt~~~g~~~~~~i~~la~~I~~l~~~G~~vvlVsSGav~~G~~~l~~~~---~~~~~~~~qa~aavGq~ 86 (265)
T PRK12314 10 KRIVIKVGSSSLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK---RPTNLAEKQALAAVGQP 86 (265)
T ss_pred CEEEEEECHHHEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCC---CCCCHHHHHHHHHHHHH
T ss_conf 789999661126789998599999999999999997899899986374431500138877---87624679999997279
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--E-CCCC
Q ss_conf 999999999984399863567332455121335520001236210033431068058603433355684244--3-0686
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--L-GRGG 152 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--l-gRGG 152 (411)
.-+.+...++...|+++ .|+ ++|.+++.+.+......+.+..+|+.+.|||+ |+++.++| + ..|+
T Consensus 87 ~Lm~~y~~~f~~~~~~~-----aQi-Llt~~d~~~~~~~~n~~~tl~~ll~~g~IPIv------neND~Vat~ei~~fGd 154 (265)
T PRK12314 87 ELMSLYSQFFARYGIVV-----GQI-LLTRDDFDSPKSRANVKNTFESLLELGILPIV------NENDAVATDEIDKFGD 154 (265)
T ss_pred HHHHHHHHHHHHCCCCE-----EEE-ECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEE------ECCCCCCCCCCCCCCC
T ss_conf 99999998865449815-----888-50443212799999999999999848956687------0788531465445457
Q ss_pred CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHHHC-------CCCCHHHHHHHHHHHCC
Q ss_conf 242899999884734556534614402458421234411056799--999998840-------31101378876433138
Q gi|254780873|r 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSSL-------GAKVMQVRSVELAMLYK 223 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa~~-------Gakvlhp~~~~~~~~~~ 223 (411)
+|..|+++|..++||.|.++||||||||.|||..|+|++|+++++ +|..+++.- |--+---+|.+.|.+++
T Consensus 155 nD~lAA~vA~~i~AD~liilTdVDGvY~~dP~~~~dAk~I~~v~~~~~~~~~~~~~~~s~~gtGGM~sKl~Aa~~a~~~G 234 (265)
T PRK12314 155 NDRLSAIVAKLVKADLLIILSDIDGLYDKNPRIYPDAKLLSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAG 234 (265)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 50999999875597669997356742279988799973840245679789975147888877686489999999999789
Q ss_pred CEEEEECCCCCCC-----CCCCCCCCCCC
Q ss_conf 5267611237777-----76543545454
Q gi|254780873|r 224 MCLFVRSSFEDHG-----QQEQLGTLICS 247 (411)
Q Consensus 224 ipi~i~ntf~~~~-----~~~~~GT~I~~ 247 (411)
||++|-|-++|.. +.+..||+..+
T Consensus 235 i~v~I~ng~~~~~i~~~l~ge~~GT~f~P 263 (265)
T PRK12314 235 IKMVLANGFNPSDILSFLEGESIGTLFAP 263 (265)
T ss_pred CCEEEEECCCCCHHHHHHCCCCCCEEECC
T ss_conf 91999708996289999769987159806
No 39
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.95 E-value=1.3e-26 Score=198.99 Aligned_cols=220 Identities=25% Similarity=0.341 Sum_probs=175.3
Q ss_pred CCEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 96699960858458-------88999999999999996799889998068730489999999861489988999999831
Q gi|254780873|r 1 MARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTG 73 (411)
Q Consensus 1 M~~iV~KfGGtSv~-------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~G 73 (411)
+++||+|+||+.++ |.+.++++++.|++..+.|.++.+|+. ||-+ ..+..... ..-+..+.|++--..
T Consensus 5 ~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvG--GGni--~Rg~~~~~-~g~~r~~~D~mGmla 79 (238)
T COG0528 5 YMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVG--GGNI--ARGYIGAA-AGMDRVTADYMGMLA 79 (238)
T ss_pred EEEEEEEEECCEECCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC--CCHH--HHHHHHHH-CCCCHHHHHHHHHHH
T ss_conf 379999942103647888887989999999999999866968999978--9789--97678987-698512246888999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCC
Q ss_conf 29999999999984399863567332455121335520001236210033431068058603433355684244306862
Q gi|254780873|r 74 EQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGS 153 (411)
Q Consensus 74 E~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGS 153 (411)
-++++.+|...|.+.|++++.+.+...+... ......+..++++++.|+|+.|- +.+.-.||
T Consensus 80 TvmNal~L~~aL~~~~~~~~v~sai~~~~~~---------e~~~~~~A~~~l~~grVvIf~gG---tg~P~fTT------ 141 (238)
T COG0528 80 TVMNALALQDALERLGVDTRVQSAIAMPQVA---------EPYSRREAIRHLEKGRVVIFGGG---TGNPGFTT------ 141 (238)
T ss_pred HHHHHHHHHHHHHHCCCCCEECCCCCCCCCC---------CCCCHHHHHHHHHCCCEEEEECC---CCCCCCCH------
T ss_conf 9999999999986358761221311176666---------86679999999974998999188---89998734------
Q ss_pred CHHHHHHHHHHCHHHHHHHC-CHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 42899999884734556534-61440245842123441105679999999884031101378876433138526761123
Q gi|254780873|r 154 DTSAVAIAAAIKADRCDIYT-DVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSF 232 (411)
Q Consensus 154 D~tA~~ia~~l~A~~~~i~t-dV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf 232 (411)
|++|+++|..++||.+.+.| .|||||++|||+.|+|+++++|||+|++++. -+|++|.|+..|++++||++|-|-+
T Consensus 142 Dt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~---l~vmD~tA~~l~~~~~i~i~Vfn~~ 218 (238)
T COG0528 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIG---LKVMDPTAFSLARDNGIPIIVFNIN 218 (238)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCCEECCCCCCCCCCEECCCCCHHHHHHHC---CEEECHHHHHHHHHCCCCEEEEECC
T ss_conf 7999999998388689984067780368999889882232237999999724---6240599999999759948999378
Q ss_pred CCCC-----CCCCCCCCCC
Q ss_conf 7777-----7654354545
Q gi|254780873|r 233 EDHG-----QQEQLGTLIC 246 (411)
Q Consensus 233 ~~~~-----~~~~~GT~I~ 246 (411)
+|.+ ..+..||+|.
T Consensus 219 ~~~~l~~~~~ge~~GT~V~ 237 (238)
T COG0528 219 KPGNLKRALKGEEVGTIVE 237 (238)
T ss_pred CCCCHHHHHCCCCCCEEEC
T ss_conf 8765999974896741706
No 40
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.94 E-value=1.8e-25 Score=191.43 Aligned_cols=206 Identities=21% Similarity=0.321 Sum_probs=154.3
Q ss_pred EEEEEECCCCCC---CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 699960858458---88999999999999996799889998068730489999999861489988999999831299999
Q gi|254780873|r 3 RIVMKFGGTSVA---NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSG 79 (411)
Q Consensus 3 ~iV~KfGGtSv~---~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~ 79 (411)
|||.|+||+++. +.+.+++++++|++. .+++++++|||. |.+........+++.. +....|.+-....++++.
T Consensus 1 RIViKiGgs~l~~~~~~~~i~~la~~i~~l-~~~~~~iiVvgg-G~~ar~~~~~~~~~~~--~~~~~~~~g~~~t~~na~ 76 (221)
T cd04253 1 RIVISLGGSVLAPEKDADFIKEYANVLRKI-SDGHKVAVVVGG-GRLAREYISVARKLGA--SEAFLDEIGIMATRLNAR 76 (221)
T ss_pred CEEEEEEHHHCCCCCCHHHHHHHHHHHHHH-HCCCEEEEEECC-CHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHH
T ss_conf 979996077707998879999999999999-759969999877-7788769999998597--899999999999999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHH
Q ss_conf 99999984399863567332455121335520001236210033431068058603433355684244306862428999
Q gi|254780873|r 80 LMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVA 159 (411)
Q Consensus 80 l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ 159 (411)
++...+..... . ...+.+...+.+.++.+|++.|+. .+. +| |+.|++
T Consensus 77 ~l~~~~~~~~~--------~--------------~~~~~~~~~~~l~~~~i~v~~g~~----p~~-tt------D~laa~ 123 (221)
T cd04253 77 LLIAALGDAYP--------P--------------VPTSYEEALEAMFTGKIVVMGGTE----PGQ-ST------DAVAAL 123 (221)
T ss_pred HHHHHHHCCCC--------C--------------CCCCHHHHHHHHHCCCEEEEECCC----CCC-CC------CHHHHH
T ss_conf 99997404587--------6--------------646599999999749869994788----988-86------799999
Q ss_pred HHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHC------CCCCHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 99884734556534614402458421234411056799999998840------311013788764331385267611237
Q gi|254780873|r 160 IAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSL------GAKVMQVRSVELAMLYKMCLFVRSSFE 233 (411)
Q Consensus 160 ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~------Gakvlhp~~~~~~~~~~ipi~i~ntf~ 233 (411)
+|..++||.+.+.|||||+||+|||..|+|++|+++||+|+++++.- |..++.+.|.+.|.++++|++|-|-.+
T Consensus 124 vA~~i~Ad~li~ltdVdGvY~~DP~~~~~Ak~i~~is~~el~~~~~~~~~~~g~~~~~d~~Aa~~a~~~gi~~~I~nG~~ 203 (221)
T cd04253 124 LAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRD 203 (221)
T ss_pred HHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCC
T ss_conf 99982987478864358755789877998778865889999988356775689876479999999998799889986999
Q ss_pred CCC-----CCCCCCCCC
Q ss_conf 777-----765435454
Q gi|254780873|r 234 DHG-----QQEQLGTLI 245 (411)
Q Consensus 234 ~~~-----~~~~~GT~I 245 (411)
|.. +.|..||+|
T Consensus 204 ~~~i~~~l~Ge~vGTlI 220 (221)
T cd04253 204 PENLERALKGEFVGTII 220 (221)
T ss_pred CCHHHHHHCCCCCCEEE
T ss_conf 75899997799997166
No 41
>PRK12443 uridylate kinase; Reviewed
Probab=99.94 E-value=2.2e-25 Score=190.81 Aligned_cols=220 Identities=24% Similarity=0.309 Sum_probs=173.2
Q ss_pred CEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH-HHHHHHCCCCHHHHHHHHHHH
Q ss_conf 6699960858458-------88999999999999996799889998068730489999-999861489988999999831
Q gi|254780873|r 2 ARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAE-LCRQVTSIDNARERDVVISTG 73 (411)
Q Consensus 2 ~~iV~KfGGtSv~-------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~-l~~~~~~~~~~~~~d~i~s~G 73 (411)
|||++|..|-+++ |.+.++.+++.|++..+.|.++.+|+.+ | |-... .+.+ ... +..+-|++--.+
T Consensus 5 kRVllKlSGEaL~g~~~~g~d~~~l~~ia~eI~~~~~~G~evaiVvGG--G--Ni~RG~~~~~-~gi-dr~~aD~iGMLa 78 (247)
T PRK12443 5 KRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG--G--NIFRGHLAEE-WGI-DRVEADNIGTLG 78 (247)
T ss_pred CEEEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC--C--CCCCCHHHHH-CCC-CCCHHHHHHHHH
T ss_conf 789999738882899988879999999999999999779879999768--8--5023223655-398-731036888999
Q ss_pred HHHHHHHHHHHHHH-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCC
Q ss_conf 29999999999984-39986356733245512133552000123621003343106805860343335568424430686
Q gi|254780873|r 74 EQVSSGLMVLALQS-LGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGG 152 (411)
Q Consensus 74 E~~s~~l~a~~l~~-~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGG 152 (411)
-++++.+|..+|.+ .|++++.+.+...+-+. .+....+..++|+++.|+|+.| .+.+...||
T Consensus 79 TvmNal~L~~~l~~~~g~~~rv~sai~~~~v~---------e~y~~~rA~~~LekG~VVIfag---GTGnP~fTT----- 141 (247)
T PRK12443 79 TIINSLMLRGVLTSKTNKEVRVMTSIPFNAVA---------EPYIRLRAVHHLDNGYIVIFGG---GNGQPFVTT----- 141 (247)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC---------CCCCHHHHHHHHHCCCEEEEEC---CCCCCCCCC-----
T ss_conf 99999999999997559946997323367456---------7777899999973697899978---878875204-----
Q ss_pred CCHHHHHHHHHHCHHHHHHHCC-HHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 2428999998847345565346-144024584212344110567999999988403110137887643313852676112
Q gi|254780873|r 153 SDTSAVAIAAAIKADRCDIYTD-VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~~i~td-V~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
|++|++.|..++||.+.+-|. |||||++||+..|+|+++++|||+|+.+ -+-+|+...|+..|++++|||+|.|.
T Consensus 142 -DtaAaLrA~Ei~Ad~lL~at~~VDGVYd~DP~k~~dA~k~~~ls~~e~l~---~~L~vMD~tA~~lc~~~~ipi~Vfn~ 217 (247)
T PRK12443 142 -DYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVR---QNIQVMDQAALLLARDYNLPAHVFNF 217 (247)
T ss_pred -CHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCEEEEECCHHHHHH---CCCCCHHHHHHHHHHHCCCCEEEECC
T ss_conf -39999999882861332105665776468988999754443337999998---69944299999999973998899828
Q ss_pred CCCCC-----CCCCCCCCCCCC
Q ss_conf 37777-----765435454542
Q gi|254780873|r 232 FEDHG-----QQEQLGTLICSG 248 (411)
Q Consensus 232 f~~~~-----~~~~~GT~I~~~ 248 (411)
++|.+ ..+..||+|..+
T Consensus 218 ~~~g~l~ka~~Ge~iGT~V~~~ 239 (247)
T PRK12443 218 DEPGVMRRICLGEHVGTLINDD 239 (247)
T ss_pred CCCCHHHHHHCCCCCCEEECCC
T ss_conf 9986399996799863288188
No 42
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.94 E-value=5e-26 Score=195.15 Aligned_cols=228 Identities=21% Similarity=0.321 Sum_probs=161.1
Q ss_pred EEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 699960858458------88999999999999996799889998068730489999999861489988999999831299
Q gi|254780873|r 3 RIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQV 76 (411)
Q Consensus 3 ~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~ 76 (411)
+||.|+||+++. +.+++.++++.|.+..++|+++++|.|..-+.....+.+.+ ...+..++..+.+.|+..
T Consensus 1 RiViKiGss~lt~~~~~~~~~~i~~la~~I~~l~~~G~evvlVsSGAva~G~~~l~~~~---~~~~~~~~qa~AavGQ~~ 77 (251)
T cd04242 1 RIVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEK---RPKTLPEKQALAAVGQSL 77 (251)
T ss_pred CEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCHHHCCCCC---CCCHHHHHHHHHHHCCHH
T ss_conf 98999670116899998599999999999999997899799982475661876539987---864057788999857199
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--ECCCCCC
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244--3068624
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--LGRGGSD 154 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--lgRGGSD 154 (411)
-+.+....+...|+++ .|+ ++|.+.+.+..-...-...+.++|+.+.|||+ |+++.++| +..|++|
T Consensus 78 Lm~~y~~~f~~~g~~~-----aQi-Llt~~d~~~~~~~~n~~~ti~~LL~~g~iPIi------NEND~vat~ei~fGDnD 145 (251)
T cd04242 78 LMALYEQLFAQYGIKV-----AQI-LLTRDDFEDRKRYLNARNTLETLLELGVIPII------NENDTVATEEIRFGDND 145 (251)
T ss_pred HHHHHHHHHHHCCCCC-----EEE-ECCHHHCCCHHHHHHHHHHHHHHHHCCCEEEE------CCCCCCCCCCCCCCCCC
T ss_conf 9999999988729850-----035-23565402749999999999999978964675------58885521223344774
Q ss_pred HHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHHH-----CCCCCHHH--HHHHHHHHCCCE
Q ss_conf 2899999884734556534614402458421234411056799--99999884-----03110137--887643313852
Q gi|254780873|r 155 TSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS-----LGAKVMQV--RSVELAMLYKMC 225 (411)
Q Consensus 155 ~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa~-----~Gakvlhp--~~~~~~~~~~ip 225 (411)
+.|+++|..++||.|.+.|||||+||+|||..|+|++|++++. ++...++. +|.--+.. .|.+.|.++++|
T Consensus 146 ~lAa~vA~~i~Ad~LiilTdVDGvY~~dP~~~~~Ak~i~~v~~~~~~i~~~~~~~~s~~gtGGM~sKl~AA~~a~~~Gi~ 225 (251)
T cd04242 146 RLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIP 225 (251)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 79999986518887999644673236898768766634263579879997707788888738738999999999988996
Q ss_pred EEEECCCCCCC-----CCCCCCCCC
Q ss_conf 67611237777-----765435454
Q gi|254780873|r 226 LFVRSSFEDHG-----QQEQLGTLI 245 (411)
Q Consensus 226 i~i~ntf~~~~-----~~~~~GT~I 245 (411)
+.|-|-..|.. +.+..||+.
T Consensus 226 ~~I~~g~~~~~i~~~l~g~~vGT~f 250 (251)
T cd04242 226 VVIANGRKPDVLLDILAGEAVGTLF 250 (251)
T ss_pred EEEEECCCCCHHHHHHCCCCCCEEE
T ss_conf 9998289977899997699984166
No 43
>TIGR02076 pyrH_arch uridylate kinase, putative; InterPro: IPR011818 Uridylate kinases (also known as UMP kinases) are key enzymes in the synthesis of nucleoside triphosphates. They catalyse the reversible transfer of the gamma-phosphoryl group from an ATP donor to UMP, yielding UDP, which is the starting point for the synthesis of all other pyrimidine nucleotides. The eukaryotic enzyme has a dual specificity, phosphorylating both UMP and CMP, while the bacterial enzyme is specific to UMP. The bacterial enzyme shows no sequence similarity to the eukaryotic enzyme or other nucleoside monophosphate kinases, but rather appears to be part of the amino acid kinase family. It is dependent on magnesium for activity and is activated by GTP and repressed by UTP , . In many bacterial genomes, the gene tends to be located immediately downstream of elongation factor T and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function is found in the archaea and in spirochetes. Structurally, the bacterial and archaeal proteins are homohexamers centred around a hollow nucleus and organised as a trimer of dimers , . Each monomer within the protein forms the amino acid kinase fold and can be divided into an N-terminal region which binds UMP and mediates intersubunit interactions within the dimer, and a C-terminal region which binds ATP and contains a mobile loop covering the active site. Inhibition of enzyme activity by UTP appears to be due to competition for the binding site for UMP, not allosteric inhibition as was previously suspected. This entry represents the archaeal and spirochete proteins.; GO: 0009041 uridylate kinase activity, 0006221 pyrimidine nucleotide biosynthetic process.
Probab=99.92 E-value=9.6e-24 Score=179.74 Aligned_cols=196 Identities=21% Similarity=0.299 Sum_probs=163.9
Q ss_pred EEEEECCCCCC----CHHHHHHHHHHHHHHHHCC--CCEEEEEECCCC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Q ss_conf 99960858458----8899999999999999679--988999806873-0489999999861489988999999831299
Q gi|254780873|r 4 IVMKFGGTSVA----NIDCIRSAALHVKREVDRG--QEVAMVVSAMSG-ETDRLAELCRQVTSIDNARERDVVISTGEQV 76 (411)
Q Consensus 4 iV~KfGGtSv~----~~~~i~~v~~~i~~~~~~g--~~~ivVvSA~~g-~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~ 76 (411)
+|.+.||+-+. +.|.+++.++++.+..++| +++.|||. || +--.+++++++++..-+...+|.|=-.==||
T Consensus 1 iV~~LGGsV~~~~~~d~e~~~~~A~~l~~~~~~Gek~~v~vVvG--GG~~AR~YI~~aR~lnPG~~E~~lD~iGI~~TRL 78 (232)
T TIGR02076 1 IVISLGGSVLSPENIDAEKIKEYANILRKLSDEGEKHKVGVVVG--GGKTAREYIGVARELNPGASETFLDEIGIDATRL 78 (232)
T ss_pred CEEECCCEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEC--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 97833451616888887899999999999984499468998878--8765889999998608888802456777999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244306862428
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTS 156 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~t 156 (411)
+|.||..+|+....+.++-+.+| -.+.+..++|+|+.|| ..|.+| |+.
T Consensus 79 NA~LLi~aL~~~a~p~vP~~~~E---------------------A~~~~~~~~ivVmGGt----~PGhtT-------DAV 126 (232)
T TIGR02076 79 NAMLLIAALGDDAYPKVPENFEE---------------------ALEAMSLGKIVVMGGT----EPGHTT-------DAV 126 (232)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHH---------------------HHHHHHCCCEEEECCC----CCCCHH-------HHH
T ss_conf 99999987163358989889899---------------------9999826987986687----898528-------999
Q ss_pred HHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHH-C-----C-CCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 9999988473455653461440245842123441105679999999884-0-----3-1101378876433138526761
Q gi|254780873|r 157 AVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSS-L-----G-AKVMQVRSVELAMLYKMCLFVR 229 (411)
Q Consensus 157 A~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~-~-----G-akvlhp~~~~~~~~~~ipi~i~ 229 (411)
||++|..++||.+.+.|.|||||++||+..|+|+++++|+|+|+.++.. - | ..++.|-|++...+++|.++|-
T Consensus 127 AA~lAE~~~ad~L~~~TnVDGVYd~DP~~~~~A~~~~~l~~~eL~~i~~G~~~~~AG~~~~~D~lA~kii~Rs~i~t~V~ 206 (232)
T TIGR02076 127 AALLAEFLEADLLINATNVDGVYDKDPNKYPDAKKFDKLTPEELVEIVRGSSSLKAGSSEVVDPLAAKIIERSKIRTIVV 206 (232)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEE
T ss_conf 99997662687269982268521777788878400025898899998604411278997524488999997479548996
Q ss_pred CCCC
Q ss_conf 1237
Q gi|254780873|r 230 SSFE 233 (411)
Q Consensus 230 ntf~ 233 (411)
|--+
T Consensus 207 ~~~d 210 (232)
T TIGR02076 207 NGRD 210 (232)
T ss_pred CCCC
T ss_conf 4854
No 44
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.88 E-value=6.3e-22 Score=167.54 Aligned_cols=231 Identities=19% Similarity=0.268 Sum_probs=161.3
Q ss_pred CEEEEEECCCCCCC-------HHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHH----------HHHHHHH--CCC
Q ss_conf 66999608584588-------89999999999999967998899980-6873048999----------9999861--489
Q gi|254780873|r 2 ARIVMKFGGTSVAN-------IDCIRSAALHVKREVDRGQEVAMVVS-AMSGETDRLA----------ELCRQVT--SID 61 (411)
Q Consensus 2 ~~iV~KfGGtSv~~-------~~~i~~v~~~i~~~~~~g~~~ivVvS-A~~g~Td~L~----------~l~~~~~--~~~ 61 (411)
|+||.|+||+++.+ ..++.++++.|....++|.++++|.| |.+--...|- +..+... ..+
T Consensus 9 krIVIKiGss~lt~~d~~~~~~~~i~~l~~~I~~L~~~G~evvlVsSGAv~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~ 88 (284)
T cd04256 9 KRIVVKLGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQLKDMP 88 (284)
T ss_pred CEEEEEECHHHEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCHHHCCHHCCCCHHHHHHCCCCCCCCC
T ss_conf 78999957022379999975899999999999999978996999906846538114211000220244330223455575
Q ss_pred -CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCC
Q ss_conf -9889999998312999999999998439986356733245512133552000123621003343106805860343335
Q gi|254780873|r 62 -NARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLS 140 (411)
Q Consensus 62 -~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~ 140 (411)
...++..+.|.|...-+.+....+...|+.+ .|+ ++|.+++.+.+-...-.+.+..+|+.+.|||+ |
T Consensus 89 ~~~~~~qa~aavGQ~~Lm~~y~~~f~~~~~~~-----aQi-Llt~~D~~~r~~~~n~~~tl~~Ll~~gvIPIv------N 156 (284)
T cd04256 89 QMELDGRACAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQTRRNLNGTLEELLRLNIIPII------N 156 (284)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE-----EEE-ECCHHHHCCHHHHHHHHHHHHHHHHCCEEEEE------C
T ss_conf 20078999998209999999999998759816-----887-27877730279999999999999738978576------3
Q ss_pred CCCCEEE-----------ECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH-----
Q ss_conf 5684244-----------306862428999998847345565346144024584212344110567999999988-----
Q gi|254780873|r 141 HDNSVTT-----------LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS----- 204 (411)
Q Consensus 141 ~~g~~tt-----------lgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa----- 204 (411)
+++.++| ++-|-.|.-|+.+|..++||.+.+.|||||+|+.||+ .|+|++|+++...|..+++
T Consensus 157 END~Va~~e~~~~d~~~~i~fgDND~Laa~vA~~i~Ad~LillTDVdGlyd~~P~-~~~akli~~i~~~d~~~~~~~~~s 235 (284)
T cd04256 157 TNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKS 235 (284)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCC-CCCCCEEEEECCCCHHHHHCCCCC
T ss_conf 7861024655641123431135601899998876188889997257720269999-998744214556648887457889
Q ss_pred HCCCCCHHH--HHHHHHHHCCCEEEEECCCCCCC-----CCCCCCCCC
Q ss_conf 403110137--88764331385267611237777-----765435454
Q gi|254780873|r 205 SLGAKVMQV--RSVELAMLYKMCLFVRSSFEDHG-----QQEQLGTLI 245 (411)
Q Consensus 205 ~~Gakvlhp--~~~~~~~~~~ipi~i~ntf~~~~-----~~~~~GT~I 245 (411)
.+|..-+.+ +|...+.+.++|++|-|-..|+. ..+..||+.
T Consensus 236 ~~gtGGM~tKi~AA~~a~~~Gi~~~I~nG~~~~~i~~i~~g~~vGT~F 283 (284)
T cd04256 236 RVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHCCCCCCCEE
T ss_conf 976178799999999999789979995089966899997699988254
No 45
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.88 E-value=1e-21 Score=166.12 Aligned_cols=230 Identities=22% Similarity=0.323 Sum_probs=169.4
Q ss_pred CEEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 6699960858458------889999999999999967998899980-687304899999998614899889999998312
Q gi|254780873|r 2 ARIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVS-AMSGETDRLAELCRQVTSIDNARERDVVISTGE 74 (411)
Q Consensus 2 ~~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvS-A~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE 74 (411)
|+||.|.|.+++. +.+.+..+++.|....++|+++++|.| |.+--...| .....++..++..+.|.|.
T Consensus 6 kRIVIKiGSs~lt~~~g~l~~~~i~~l~~~I~~L~~~G~evilVSSGAia~G~~~L-----~~~~rp~l~~kQA~AAvGQ 80 (363)
T PRK13402 6 KRIVVKVGSALITPHKQGCSSHYLLGIAQFIVYLRAQGHQVVLVSSGSVAAGYHKL-----GFIDRPSVPEKKAMAAAGQ 80 (363)
T ss_pred CEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHC-----CCCCCCCHHHHHHHHHHHH
T ss_conf 66999967010689999878999999999999999789989998878799647760-----9976897578889998539
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--ECCCC
Q ss_conf 9999999999984399863567332455121335520001236210033431068058603433355684244--30686
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--LGRGG 152 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--lgRGG 152 (411)
..||..|-+..|+. ..|+ ++|.+++.+.+-...-.+.+..+|+.+.|||+ |+|+.++| +.-|-
T Consensus 81 ---~~Lm~~Y~~~F~~~-----~AQi-LLT~~D~~~r~rylN~r~Tl~~Ll~~gvIPII------NENDtVat~Ei~fGD 145 (363)
T PRK13402 81 ---GDMMATWSKLFDFP-----AAQL-LLTHGDLRDRERYISIRNTINVLLEHGILPII------NENDAVTTDKLKVGD 145 (363)
T ss_pred ---HHHHHHHHHHHCCH-----HHHH-HCCHHHHCCCHHHHHHHHHHHHHHHCCCCCCC------CCCCCEEEEEEECCC
T ss_conf ---99999999984735-----7677-18887861647889999999999968942211------588850100121157
Q ss_pred CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHH-----HCCCCCH--HHHHHHHHHHCC
Q ss_conf 242899999884734556534614402458421234411056799--9999988-----4031101--378876433138
Q gi|254780873|r 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMS-----SLGAKVM--QVRSVELAMLYK 223 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa-----~~Gakvl--hp~~~~~~~~~~ 223 (411)
.|.-||++|..++||.+.|.|||||+|++|||..|+|++|+++.. +|...++ .+|.--+ -=+|.+.|.+.+
T Consensus 146 ND~LaA~VA~li~ADlLilLTDvdGLYd~dP~~~~~AklI~~V~~i~~~i~~~a~~~~s~~GtGGM~TKl~AA~~a~~~G 225 (363)
T PRK13402 146 NDNLSAMVAALADADTLIICSDVDGLYDQNPRTNPDAKLIKEVTEINAEIYAMAGGAGSEVGTGGMRTKIQAAKKAISHG 225 (363)
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 50799999987188889994166844479987787664367851566778987168778888783478999999999779
Q ss_pred CEEEEECCCCCC-----CCCCCCCCCCCCCCCC
Q ss_conf 526761123777-----7765435454542101
Q gi|254780873|r 224 MCLFVRSSFEDH-----GQQEQLGTLICSGEDI 251 (411)
Q Consensus 224 ipi~i~ntf~~~-----~~~~~~GT~I~~~~~~ 251 (411)
||+.|-|-..|. .+.+..||+..+..+.
T Consensus 226 i~~~Ia~G~~~~~i~~i~~g~~~GT~F~p~~~~ 258 (363)
T PRK13402 226 IETFIINGFTADIFNQLLKGQNPGTLFTPDEKP 258 (363)
T ss_pred CCEEECCCCCCCHHHHHHCCCCCCEEEECCCCC
T ss_conf 969981699974799997089862499547777
No 46
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.87 E-value=1.7e-21 Score=164.61 Aligned_cols=231 Identities=24% Similarity=0.304 Sum_probs=168.6
Q ss_pred CCEEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEE-CCCCHHHHHHHHHHH-HHC---CCCHHHHHHH
Q ss_conf 96699960858458------889999999999999967998899980-687304899999998-614---8998899999
Q gi|254780873|r 1 MARIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVS-AMSGETDRLAELCRQ-VTS---IDNARERDVV 69 (411)
Q Consensus 1 M~~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvS-A~~g~Td~L~~l~~~-~~~---~~~~~~~d~i 69 (411)
.++||.|+|.+++. +.+.+..+++.|....++|+++++|.| |.+ +..+ +.. ..+..++..+
T Consensus 8 ~krIVIKiGSs~Lt~~~g~l~~~~i~~l~~~I~~L~~~G~evilVSSGAIa--------~G~~~L~~~~rp~~l~~~QA~ 79 (372)
T PRK05429 8 ARRIVVKVGSSLLTDDGGGLDRARIAELARQIAALRAAGHEVVLVSSGAVA--------AGRSRLGLPKRPKTLAEKQAA 79 (372)
T ss_pred CCEEEEECCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHH--------HHHHHCCCCCCCCCHHHHHHH
T ss_conf 878999917433689888888999999999999999789999998840798--------627760999885637788899
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--
Q ss_conf 983129999999999984399863567332455121335520001236210033431068058603433355684244--
Q gi|254780873|r 70 ISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT-- 147 (411)
Q Consensus 70 ~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt-- 147 (411)
.|.|...-+.....++...|+.+ .|+ ++|.+++.+.+-...-.+.+.++|+.+.|||+ |+|+.++|
T Consensus 80 AAvGQ~~Lm~~Y~~~f~~~~~~~-----aQi-LlT~~D~~~r~rylN~r~tl~~Ll~~gvIPII------NENDtVat~E 147 (372)
T PRK05429 80 AAVGQSRLMQAYEELFARYGITV-----AQI-LLTRDDLSDRERYLNARATLRTLLELGVVPII------NENDTVATDE 147 (372)
T ss_pred HHHCHHHHHHHHHHHHHHCCCCE-----EEE-ECCHHHHCCHHHHHHHHHHHHHHHHCCCEEEC------CCCCCCEECC
T ss_conf 87156999999999998639855-----788-62665640458999999999999877960001------4777400055
Q ss_pred ECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHH-----HCCCCCH--HHHHHHH
Q ss_conf 30686242899999884734556534614402458421234411056799--9999988-----4031101--3788764
Q gi|254780873|r 148 LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMS-----SLGAKVM--QVRSVEL 218 (411)
Q Consensus 148 lgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa-----~~Gakvl--hp~~~~~ 218 (411)
+.-|-.|.-||++|..++||.+.|.|||||+||+||+..|+|++|+++.. ++...++ .+|.--+ --.|.+.
T Consensus 148 i~fGDND~LaA~VA~li~ADlLiiLTdvdGly~~~P~~~~~A~~I~~v~~i~~~i~~~~~~~~s~~GtGGM~tKl~AA~~ 227 (372)
T PRK05429 148 IKFGDNDTLSALVANLVEADLLILLTDIDGLYTADPRKNPDAKLIPEVEAITDELEAMAGGAGSGLGTGGMATKLEAARI 227 (372)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 55578515882687773887799974567533589976865404412057877899871688778877843779999999
Q ss_pred HHHCCCEEEEECCCCCC-----CCCCCCCCCCCCCCCC
Q ss_conf 33138526761123777-----7765435454542101
Q gi|254780873|r 219 AMLYKMCLFVRSSFEDH-----GQQEQLGTLICSGEDI 251 (411)
Q Consensus 219 ~~~~~ipi~i~ntf~~~-----~~~~~~GT~I~~~~~~ 251 (411)
|...|+|..|-|-..|+ ...+..||+..+..+.
T Consensus 228 a~~~Gi~~iIa~G~~~~~l~~i~~g~~~GT~f~~~~~~ 265 (372)
T PRK05429 228 ATRAGIPVVIASGRKPDVLLRLLAGEAVGTLFLPQEKP 265 (372)
T ss_pred HHHCCCCEEECCCCCCCHHHHHHCCCCCEEEEECCCCC
T ss_conf 99779989992499965899997799726999438887
No 47
>TIGR01027 proB glutamate 5-kinase; InterPro: IPR005715 L-glutamate 5-phosphotransferase, (gamma-glutamyl kinase, proB, 2.7.2.11 from EC), catalyzes the first step in proline biosynthesis ATP + L-glutamate = ADP + L-glutamate 5-phosphate. the product of which rapidly cyclises to 5-oxoproline and phosphate. Bacterial ProB proteins hits the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues. ; GO: 0004349 glutamate 5-kinase activity, 0006561 proline biosynthetic process, 0005737 cytoplasm.
Probab=99.86 E-value=6.5e-21 Score=160.68 Aligned_cols=229 Identities=22% Similarity=0.301 Sum_probs=161.0
Q ss_pred CEEEEEECCCCCC--------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC---CHHHHHHHH
Q ss_conf 6699960858458--------88999999999999996799889998068730489999999861489---988999999
Q gi|254780873|r 2 ARIVMKFGGTSVA--------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID---NARERDVVI 70 (411)
Q Consensus 2 ~~iV~KfGGtSv~--------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~---~~~~~d~i~ 70 (411)
++||.|+|-||+. +...|..+++.|.+...+|+++|+|.| |.+.--. ..+..-. +..++-.+.
T Consensus 1 ~riVvK~GsS~Lt~~~g~h~l~~~~i~~lv~~v~~L~~~Gh~vviVSS--GA~AaG~----~~LG~~~rP~~la~KQAlA 74 (379)
T TIGR01027 1 KRIVVKVGSSSLTGSSGSHELDRSRIAELVEQVAALHAAGHEVVIVSS--GAVAAGF----EALGLPERPKTLAEKQALA 74 (379)
T ss_pred CEEEEEEECCEEECCCCCCEECHHHHHHHHHHHHHHHHCCCEEEEEEC--CHHHHHH----HHCCCCCCCCCHHHHHHHH
T ss_conf 968999703211178887413779999999999999865998999816--7588623----4455699986256788787
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE-
Q ss_conf 831299999999999843998635673324551213355200--01236210033431068058603433355684244-
Q gi|254780873|r 71 STGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT- 147 (411)
Q Consensus 71 s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~--~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt- 147 (411)
|.|.-.=+......+...|++. -|+ ++|-+++.+-+ -...-...|..+++.+.|||| |+|+.+.|
T Consensus 75 AVGQ~~Lm~~y~~~F~~Yg~~~-----aQi-LLTr~D~~~R~eeRy~NAr~TL~~Ll~~gvvPIi------NENDTVave 142 (379)
T TIGR01027 75 AVGQVRLMQLYENLFSSYGLKV-----AQI-LLTRADFSKREEERYLNARNTLEALLELGVVPII------NENDTVAVE 142 (379)
T ss_pred HCCHHHHHHHHHHHHHHCCCCH-----HHH-HHCHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEE------ECCCCEEEE
T ss_conf 3145689999999997548822-----243-4057988633789999999999999865947898------677422440
Q ss_pred -ECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHHH-C-CCC-C----HHH--HH
Q ss_conf -30686242899999884734556534614402458421234411056799--99999884-0-311-0----137--88
Q gi|254780873|r 148 -LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS-L-GAK-V----MQV--RS 215 (411)
Q Consensus 148 -lgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa~-~-Gak-v----lhp--~~ 215 (411)
+.=|-.|+-+|++|..++||.+.|.|||||+|++|||..|+|++|+++.- ++-.+++. - |.. + ++- .|
T Consensus 143 Ei~fGDND~LSAlvA~Lv~AD~L~LLTD~dGLYd~dPR~nPdA~~I~~V~~~~~~~~~~aG~S~g~~~~GTGGM~sK~~A 222 (379)
T TIGR01027 143 EIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSSGSSKVGTGGMRSKIEA 222 (379)
T ss_pred EEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHEECCCCCCCCCCCCCHHHHHHHH
T ss_conf 00546781699999999975289776175533068745378514534124533234111146677887566467899999
Q ss_pred HHHHHHCCCEEEEECCCCCCC-----C----CCCCCCCCCCC
Q ss_conf 764331385267611237777-----7----65435454542
Q gi|254780873|r 216 VELAMLYKMCLFVRSSFEDHG-----Q----QEQLGTLICSG 248 (411)
Q Consensus 216 ~~~~~~~~ipi~i~ntf~~~~-----~----~~~~GT~I~~~ 248 (411)
.+.|.+.|||+.|.+.-.|.. + .+.-||+..+.
T Consensus 223 A~~A~~~Gv~v~i~~g~~P~~i~~~~~hhfyg~~~GT~F~a~ 264 (379)
T TIGR01027 223 ARLATRAGVPVIIASGSKPEKIADALEHHFYGAPVGTVFEAQ 264 (379)
T ss_pred HHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCCCCCCEECCC
T ss_conf 999986899589944889789999999740377877443357
No 48
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.84 E-value=1.4e-19 Score=151.69 Aligned_cols=229 Identities=23% Similarity=0.323 Sum_probs=166.9
Q ss_pred CCEEEEEECCCCCC------CHHHHHHHHHHHHHHHHCCCCEEEEEE-CCC-CHHHHHHHHHHHHHCCC---CHHHHHHH
Q ss_conf 96699960858458------889999999999999967998899980-687-30489999999861489---98899999
Q gi|254780873|r 1 MARIVMKFGGTSVA------NIDCIRSAALHVKREVDRGQEVAMVVS-AMS-GETDRLAELCRQVTSID---NARERDVV 69 (411)
Q Consensus 1 M~~iV~KfGGtSv~------~~~~i~~v~~~i~~~~~~g~~~ivVvS-A~~-g~Td~L~~l~~~~~~~~---~~~~~d~i 69 (411)
++++|.|+|-+|+. +.+.+..++..|.+..++|+++++|.| |++ |. ..+.... ...++..+
T Consensus 6 ~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGAiaaG~--------~~Lg~~~rp~~l~~kQA~ 77 (369)
T COG0263 6 ARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGAIAAGR--------TRLGLPKRPKTLAEKQAA 77 (369)
T ss_pred CEEEEEEECCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHCH--------HHCCCCCCCCCHHHHHHH
T ss_conf 537999977502357999829899999999999998689889998344665174--------441999887612888999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--
Q ss_conf 983129999999999984399863567332455121335520001236210033431068058603433355684244--
Q gi|254780873|r 70 ISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT-- 147 (411)
Q Consensus 70 ~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt-- 147 (411)
.+.|.-.-+......+...|+.. .|+ ++|-+.+.+.+-...-...+..+++.+.|||+ |+|+.+.|
T Consensus 78 AAVGQ~~Lm~~y~~~f~~~g~~v-----~Qi-LLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPII------NENDtva~~E 145 (369)
T COG0263 78 AAVGQVRLMQLYEELFARYGIKV-----GQI-LLTRDDFSDRRRYLNARNTLSALLELGVVPII------NENDTVATEE 145 (369)
T ss_pred HHHCHHHHHHHHHHHHHHCCCEE-----EEE-EEEHHHHHHHHHHHHHHHHHHHHHHCCCEEEE------CCCCCEEEEE
T ss_conf 87379999999999998609745-----689-86031200089999999999999978962246------4878604410
Q ss_pred ECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH--HHHHHHHH-----CCCCCH--HHHHHHH
Q ss_conf 30686242899999884734556534614402458421234411056799--99999884-----031101--3788764
Q gi|254780873|r 148 LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS-----LGAKVM--QVRSVEL 218 (411)
Q Consensus 148 lgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy--~Ea~eLa~-----~Gakvl--hp~~~~~ 218 (411)
+.-|-.|+-+|++|...+||.+.+.||+||+|++|||..|+|++|+++.- .|...|+. +|.--+ -=.|.+.
T Consensus 146 ikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~i 225 (369)
T COG0263 146 IKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKI 225 (369)
T ss_pred EEECCCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 36568746999999874878799987468555899887998746102134688899874677777775618889999999
Q ss_pred HHHCCCEEEEECCCCCC-----CCCCCCCCCCCCCC
Q ss_conf 33138526761123777-----77654354545421
Q gi|254780873|r 219 AMLYKMCLFVRSSFEDH-----GQQEQLGTLICSGE 249 (411)
Q Consensus 219 ~~~~~ipi~i~ntf~~~-----~~~~~~GT~I~~~~ 249 (411)
|.+.|+|+.|-|...|. .+.+..||+..+..
T Consensus 226 A~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 226 ATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHCCCCCCEEECCC
T ss_conf 997699589946998315899971898851893588
No 49
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.83 E-value=1.7e-19 Score=151.16 Aligned_cols=226 Identities=21% Similarity=0.264 Sum_probs=141.2
Q ss_pred EEEEEECCCCCCC--------HHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC--CHHHHHHHHHH
Q ss_conf 6999608584588--------8999999999999996799889998068730489999999861489--98899999983
Q gi|254780873|r 3 RIVMKFGGTSVAN--------IDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID--NARERDVVIST 72 (411)
Q Consensus 3 ~iV~KfGGtSv~~--------~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~--~~~~~d~i~s~ 72 (411)
.||.|+||+++.+ .+.+.+++..+++. .++++++|++| |..-... +++..... .......+...
T Consensus 1 mIVIKiGgs~lt~~~~~~~~~~~~i~~~~~~i~~~--~~~~iiiV~Gg-G~~g~~~---~~~~~~~~~~~~~~~~~~~~~ 74 (252)
T cd04241 1 MIILKLGGSVITDKDRPETIREENLERIARELAEA--IDEKLVLVHGG-GSFGHPK---AKEYGLPDGDGSFSAEGVAET 74 (252)
T ss_pred CEEEEECHHHEECCCCCCCCCHHHHHHHHHHHHHH--CCCCEEEEECC-HHHHHHH---HHHHCCCCCCCCCCHHHHHHH
T ss_conf 99999657870489765651199999999999986--79988999895-4876999---987134468741228889999
Q ss_pred HHH--HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECC
Q ss_conf 129--999999999984399863567332455121335520001236210033431068058603433355684244306
Q gi|254780873|r 73 GEQ--VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGR 150 (411)
Q Consensus 73 GE~--~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgR 150 (411)
..- .-...+...|.+.|+++..+.+.+....... ++...+.+.+..+++.+.|||+.+....+.++....+
T Consensus 75 ~~~~~~l~~~~~~~l~~~g~~a~~l~~~~~~~~~~~-----~~~~~~~~~l~~ll~~g~IPIin~~~v~~~~~~~~i~-- 147 (252)
T cd04241 75 HEAMLELNSIVVDALLEAGVPAVSVPPSSFFVTENG-----RIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITIL-- 147 (252)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCC-----CEEECCHHHHHHHHHCCCEEEECCCCEECCCCCCCCC--
T ss_conf 999999999999999976996352040444443178-----4103178999999987964696687652477742224--
Q ss_pred CCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCC-C------CHHH--HHHHHHHH
Q ss_conf 8624289999988473455653461440245842123441105679999999884031-1------0137--88764331
Q gi|254780873|r 151 GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGA-K------VMQV--RSVELAML 221 (411)
Q Consensus 151 GGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Ga-k------vlhp--~~~~~~~~ 221 (411)
..|..|+++|.+++||.+.+.|||||+|++|| +++++|++++..+..++...+. + =+.| .+..-+.+
T Consensus 148 -~~D~lAa~vA~~l~Ad~LI~lTDVdGvy~~~p---~~a~~i~~i~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~ 223 (252)
T cd04241 148 -SGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELAR 223 (252)
T ss_pred -CHHHHHHHHHHHHCCCEEEEEECCCEEECCCC---CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf -37399999999838786999956874646999---99838645073249999873687778762773999999999997
Q ss_pred CCCEEEEECCCCCCC-----CCCCCCCCC
Q ss_conf 385267611237777-----765435454
Q gi|254780873|r 222 YKMCLFVRSSFEDHG-----QQEQLGTLI 245 (411)
Q Consensus 222 ~~ipi~i~ntf~~~~-----~~~~~GT~I 245 (411)
+++|++|-|-..|+. ..+..||.|
T Consensus 224 ~Gi~v~I~~G~~~~~i~~~l~g~~vGT~I 252 (252)
T cd04241 224 RGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCCEEEECCCCCCHHHHHHCCCCCCCCC
T ss_conf 89949998999976799997799998999
No 50
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=99.77 E-value=1.5e-18 Score=144.71 Aligned_cols=64 Identities=28% Similarity=0.431 Sum_probs=63.0
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 1699996678667855799999999867982999970784899997088999999999987097
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
||+||+||.||+++||+++|+|++|+++||||+|+++||++|||+|+++|.++|+++||++|+|
T Consensus 1 cAKVSiVG~GM~~~pGVaa~~f~aL~~~~InI~~istSei~IS~vV~~~d~~~Av~alH~~F~L 64 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDVKEAVNALHEAFEL 64 (64)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 9779997788778852999999999978995799971682899998088999999999987389
No 51
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.77 E-value=2.5e-17 Score=136.59 Aligned_cols=215 Identities=18% Similarity=0.231 Sum_probs=148.8
Q ss_pred EEEEEECCCCCCC--HHHHHHHHHHHHHHHHCCCCEEEEEECCCCH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 6999608584588--8999999999999996799889998068730-489999999861489988999999831299999
Q gi|254780873|r 3 RIVMKFGGTSVAN--IDCIRSAALHVKREVDRGQEVAMVVSAMSGE-TDRLAELCRQVTSIDNARERDVVISTGEQVSSG 79 (411)
Q Consensus 3 ~iV~KfGGtSv~~--~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~-Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~ 79 (411)
.-|.|+||-|+-| .+.+.-+.+.|.+...+ |+.+++.. ||+ ...+.++.-.+. .+. -.+..+.+.=.-.++.
T Consensus 32 ~~VvKIGGqsi~DrG~~av~Plv~Ei~~~~~~-hk~li~TG--gG~RaRHiy~igldLg-mPt-GvLa~L~~~vs~QNa~ 106 (262)
T cd04255 32 LNVVKIGGQSIIDRGAEAVLPLVEEIVALRPE-HKLLILTG--GGTRARHVYSIGLDLG-MPT-GVLAKLGASVSEQNAE 106 (262)
T ss_pred CEEEEECCEEEECCCHHHHHHHHHHHHHHHHH-CCEEEEEC--CCHHHHHHHHHHHCCC-CCH-HHHHHHHHHHHHHHHH
T ss_conf 22899878030037334243289999975131-52899836--7500334312341479-961-1567764224464799
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEE------EECCCCC
Q ss_conf 9999998439986356733245512133552000123621003343106805860343335568424------4306862
Q gi|254780873|r 80 LMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVT------TLGRGGS 153 (411)
Q Consensus 80 l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~t------tlgRGGS 153 (411)
+++..|...|...+ ... +...+.-++..+..||+.|| -+.|.-. .+---.+
T Consensus 107 ml~~LLa~~G~~~i--~~~------------------~~~~l~~~l~~~~~~v~~g~---PPY~~~e~p~~~g~IPphRT 163 (262)
T cd04255 107 MLATLLAKHGGSKV--GHG------------------DLLQLPTFLKAGRAPVISGM---PPYGLWEHPAEEGRIPPHRT 163 (262)
T ss_pred HHHHHHCCCCCEEE--CCC------------------CHHHHHHHHHCCCEEEEECC---CCCCCCCCCCCCCCCCCCCC
T ss_conf 99998431387025--787------------------78999999865871044279---99754547865687899754
Q ss_pred CHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCC--CEEEEECC
Q ss_conf 4289999988473455653461440245842123441105679999999884031101378876433138--52676112
Q gi|254780873|r 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYK--MCLFVRSS 231 (411)
Q Consensus 154 D~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~--ipi~i~nt 231 (411)
|+-|.++|..++|+.|.+.|||||+||+||+..|+|+.++++||+|.+++ .++--|+...++++++.+. -+++|-|-
T Consensus 164 DtGAfLlAe~iGa~~li~vkdVDGvYtaDPk~~~~A~~i~~iS~~Ell~~-~L~dlv~er~~l~ll~~a~~i~~VqVvNg 242 (262)
T cd04255 164 DVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKK-DLDDLVLERPVLDLLQNARHVKEVQIVNG 242 (262)
T ss_pred CHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCCEECCCCCHHHHHHC-CCCCCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 38999999984875379996577776799999976534253779999863-47643005999999986113551799807
Q ss_pred CCCCC-----CCCCCCCCCC
Q ss_conf 37777-----7654354545
Q gi|254780873|r 232 FEDHG-----QQEQLGTLIC 246 (411)
Q Consensus 232 f~~~~-----~~~~~GT~I~ 246 (411)
..|.+ +.|+-||+|.
T Consensus 243 l~PGnitrAL~GEhVGTiIr 262 (262)
T cd04255 243 LVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred CCCCHHHHHHCCCCCCCEEC
T ss_conf 88537999872686641009
No 52
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=99.72 E-value=2.8e-17 Score=136.19 Aligned_cols=64 Identities=39% Similarity=0.581 Sum_probs=62.5
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 169999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+|+|++||+||+++||+++|+|++|++++|||.||+ +||+||||+|+++|.++|+++||++|||
T Consensus 1 la~isvvG~gM~~~~Gvaar~F~aL~~~~INi~mIsQgsSE~sIs~~V~~~d~~~Av~~lh~~Ffl 66 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFFL 66 (66)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 949999778967895779999999998899789996488732799998089999999999998767
No 53
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=99.72 E-value=3e-17 Score=136.02 Aligned_cols=63 Identities=56% Similarity=0.778 Sum_probs=61.9
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 699996678667855799999999867982999970784899997088999999999987097
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
|+||+||+||+++||+++|+|++|+++||||+||++||++|||+|+++|.++|+++||++|+|
T Consensus 1 aKisvVG~gm~~~~Gvaarif~aL~~~~Ini~mIssSE~~Is~vV~~~~~~~Av~~Lh~~F~L 63 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLIDEDDAEKAVRALHEAFEL 63 (63)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 969898988478922999999999987998599983566699998299999999999987188
No 54
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.72 E-value=2.9e-17 Score=136.17 Aligned_cols=64 Identities=34% Similarity=0.461 Sum_probs=62.0
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 169999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+|+||+||+||+++||+++|+|++|++++|||+||+ +||+||||||+++|.++|+++||++||.
T Consensus 1 lA~vsvVG~gM~~~~Gvaar~F~~La~~~INI~mIsQGsSEinIs~vV~~~d~~~Av~alH~~Ffe 66 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE 66 (66)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 939999777703596679999999998799879885278604799998289999999999998629
No 55
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.72 E-value=3.7e-17 Score=135.45 Aligned_cols=63 Identities=54% Similarity=0.777 Sum_probs=61.9
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 699996678667855799999999867982999970784899997088999999999987097
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
|+||+||.||+++||+++|+|++|+++||||+||++||++|||+|+++|.++|+++||++|+|
T Consensus 1 aKisvvG~Gm~~~~Gvaarif~aL~~~~Inv~~issSE~~Is~vV~~~d~~~Av~aLh~~F~L 63 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKISCLVDEDDAEKAVRALHEAFEL 63 (63)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 969998888478943999999999987998799982567799998089999999999987188
No 56
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.70 E-value=6.9e-17 Score=133.61 Aligned_cols=64 Identities=33% Similarity=0.542 Sum_probs=62.4
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 169999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+|+|++||+||+++||+++|+|++|++++|||.||+ +||+||||+|+++|.++|+++||++|+|
T Consensus 1 ia~isvvG~gM~~~~GvaariF~aLa~~~INI~mIsQgsSE~sIs~~V~~~d~~~Av~alh~eF~L 66 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEFGL 66 (66)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 949999788847896779999999997799789997377630799999489999999999987288
No 57
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.70 E-value=1.1e-15 Score=125.42 Aligned_cols=231 Identities=24% Similarity=0.294 Sum_probs=151.6
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHHH--HHHH
Q ss_conf 69996085845888999999999999996799889998068730489999999861489-----9889999998--3129
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVIS--TGEQ 75 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~s--~GE~ 75 (411)
.+|.|+||+.+.+.+...++++.|......|.++++|+++--.+...|.++.-+-...+ ++..++.+.. .|+
T Consensus 1 TiVIkiGG~~l~~~~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvT~~~~l~~~~~~l~g~- 79 (262)
T PRK00942 1 TIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDKETMEVVEMVLAGK- 79 (262)
T ss_pred CEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCH-
T ss_conf 9999988588449879999999999999889919999388299999999869972304775466189999999998171-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-----------CCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 99999999998439986356733245512133-----------552-000123621003343106805860343335568
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSL-----------HGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDN 143 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~-----------~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g 143 (411)
+...+ ...|++.|+++..+.+.+..+++-.. ++. .++..++.+.+..+++.+.+||++- +|.+.+|
T Consensus 80 i~~~l-~~~l~~~g~~avglsg~d~~~v~a~~~~~~~~~~~~d~g~vG~v~~v~~~~I~~ll~~g~IpVisp-ig~~~~G 157 (262)
T PRK00942 80 VNKEL-VSLINKHGGKAVGLSGKDGGLVTARKLDENGKEKIIDLGYVGEVEEVNPALLETLLEAGYIPVISP-IGVGEDG 157 (262)
T ss_pred HHHHH-HHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECC-CCCCCCC
T ss_conf 99999-999985587423145667875899986445665456676204616666899999984797579626-4188988
Q ss_pred CEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCC----CCHHHHHHHHH
Q ss_conf 42443068624289999988473455653461440245842123441105679999999884031----10137887643
Q gi|254780873|r 144 SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGA----KVMQVRSVELA 219 (411)
Q Consensus 144 ~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Ga----kvlhp~~~~~~ 219 (411)
++-.+ -.|..|+.+|.+|+||.+.+.|||||||.. +.++|++++.+|+.+|..-|. -...=++..-+
T Consensus 158 ~~~ni---naD~~Aa~iA~~l~AdkLi~ltdv~Gv~~~------~g~~i~~i~~~e~~~l~~~~~~~ggM~pKl~aa~~a 228 (262)
T PRK00942 158 ETYNV---NADTAAGAIAAALGAEKLILLTDVPGVLDD------KGSLISELTAEEAEELIEDGVITGGMIPKVEAALEA 228 (262)
T ss_pred CEECC---CHHHHHHHHHHHHCCCEEEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf 78557---799999999998467949999588761578------875143106999999986597689609999999999
Q ss_pred HHCCCE-EEEECCCCCCC------CCCCCCCCC
Q ss_conf 313852-67611237777------765435454
Q gi|254780873|r 220 MLYKMC-LFVRSSFEDHG------QQEQLGTLI 245 (411)
Q Consensus 220 ~~~~ip-i~i~ntf~~~~------~~~~~GT~I 245 (411)
.+++++ ++|-|--.|+. ..+..||+|
T Consensus 229 ~~~Gv~rv~I~~g~~~~~ll~elft~~G~GT~i 261 (262)
T PRK00942 229 ARSGVRSVHIIDGRVPHSLLLELFTDEGIGTMI 261 (262)
T ss_pred HHCCCCEEEECCCCCCCHHHHHHHCCCCCCCEE
T ss_conf 981999899936999877999981799985256
No 58
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.70 E-value=1.3e-15 Score=124.96 Aligned_cols=220 Identities=21% Similarity=0.258 Sum_probs=147.4
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHHH--HHHHH
Q ss_conf 9996085845888999999999999996799889998068730489999999861489-----9889999998--31299
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVIS--TGEQV 76 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~s--~GE~~ 76 (411)
||.|+||+.+.+.+.+.++++.|......|.++++|+++-.-+...|.++.-+..... +...++.+.. .| .+
T Consensus 1 IVIKlGG~~l~d~~~~~~~~~dIa~L~~~G~~vVlVHGgg~qi~~~l~~~gi~~~~~~g~RvTd~~~l~~~~~~l~g-~i 79 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAG-KV 79 (256)
T ss_pred CEEEECHHHHCCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCCEECCCCCCCCHHHHHHHHHHHHH-HH
T ss_conf 98997868945987999999999999988992999918829999999986998350267314618789999999853-38
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-------CCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEE
Q ss_conf 999999999843998635673324551213-------3552-00012362100334310680586034333556842443
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDS-------LHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTL 148 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~-------~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttl 148 (411)
+..++ ..|++.|+++..+.+.+..+++-. +|+. .++..++.+.+..+++.+.+||++- +|.+.+|+...+
T Consensus 80 n~~l~-~~l~~~g~~aiglsg~d~~~i~a~~~~~~~~d~g~vG~v~~v~~~~i~~lL~~g~IPVi~p-i~~~~~G~~~ni 157 (256)
T cd04238 80 NKELV-SLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAP-IAVDEDGETYNV 157 (256)
T ss_pred HHHHH-HHHHHCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEC-EEECCCCCEEEE
T ss_conf 99999-9999779972121465587799997556443434245544355899999984799447604-135688868963
Q ss_pred CCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCC--CCH--HHHHHHHHHHCCC
Q ss_conf 068624289999988473455653461440245842123441105679999999884031--101--3788764331385
Q gi|254780873|r 149 GRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGA--KVM--QVRSVELAMLYKM 224 (411)
Q Consensus 149 gRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Ga--kvl--hp~~~~~~~~~~i 224 (411)
-.|..|+.+|.+++|+.+.+.|||||||..++ +++++++.+|+.++-.-|. .=+ .=++..-+.++++
T Consensus 158 ---naD~~Aa~lA~~l~AdkLi~ltdv~Gv~~~~g------~~i~~lt~~e~~~l~~~~~~~gGM~~Kl~aa~~a~~~Gv 228 (256)
T cd04238 158 ---NADTAAGAIAAALKAEKLILLTDVPGVLDDPG------SLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGV 228 (256)
T ss_pred ---CHHHHHHHHHHHHCCCCEEEECCCCCEECCCC------CCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf ---79999999999728010898528886156887------523412799999999769668953999999999998499
Q ss_pred -EEEEECCCCCC
Q ss_conf -26761123777
Q gi|254780873|r 225 -CLFVRSSFEDH 235 (411)
Q Consensus 225 -pi~i~ntf~~~ 235 (411)
.++|-|-..|+
T Consensus 229 ~rv~Ii~g~~~~ 240 (256)
T cd04238 229 RKVHIIDGRVPH 240 (256)
T ss_pred CEEEEECCCCCC
T ss_conf 979993799987
No 59
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=99.67 E-value=1.8e-16 Score=130.83 Aligned_cols=67 Identities=31% Similarity=0.530 Sum_probs=64.3
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCCCCC
Q ss_conf 169999667866785579999999986798299997--0784899997088999999999987097779
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ld~~ 411 (411)
+|+|+++|.||++.||+++|+|++|++++|||.||+ +||++|||+|+++|.++|+++||++|+++.+
T Consensus 1 valv~vvG~gm~~~~GvaariF~~La~~~INI~mIsQ~sSE~sIs~vV~~~d~~~Av~aL~~~F~le~~ 69 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALEIK 69 (80)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_conf 979999788968997489999999998799789997378765699998189999999999999998997
No 60
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.67 E-value=2.9e-16 Score=129.38 Aligned_cols=63 Identities=32% Similarity=0.448 Sum_probs=61.5
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 169999667866785579999999986798299997--078489999708899999999998709
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYG 407 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ 407 (411)
+|+|++||+||+++||+++|+|++|++++|||.||+ +||+||||+|+++|.++|+++||++||
T Consensus 1 lAlisivG~gM~~~~GvaariF~~L~~~~INI~mIsQgsSE~~Is~~V~~~d~~~Av~alh~~Ff 65 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFF 65 (66)
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHC
T ss_conf 91999978781679358999999999879988998627761159999818999999999999864
No 61
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.64 E-value=3.1e-14 Score=115.72 Aligned_cols=222 Identities=22% Similarity=0.276 Sum_probs=145.3
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHH--HHHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-----988999999--8312
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVI--STGE 74 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~--s~GE 74 (411)
|++|.|+||+.+.+.+.+.+++..|......|.++++|++.---++..|..+..+-...+ ++..++.+. ..|+
T Consensus 15 ktiVIklGG~~l~d~~~~~~~~~dI~~L~~~G~~vVlVHGggpqi~~~l~~~gi~~~~~~G~RvT~~~~l~iv~~~l~G~ 94 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEIVEMVLVGK 94 (279)
T ss_pred CEEEEEECHHHHCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
T ss_conf 98999989078469779999999999999889929999699679999999869984223774357388899999998561
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----------CCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCC
Q ss_conf 99999999999843998635673324551213-----------3552-00012362100334310680586034333556
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDS-----------LHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHD 142 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~-----------~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~ 142 (411)
++..+ ...|++.|++|..+.+.+..+++-. +++. .++..++.+.+..+++.+.+||++= +|.+.+
T Consensus 95 -vn~~l-v~~l~~~g~~avglsg~dg~~i~a~~~~~~~~~~~~D~g~vG~v~~vd~~~i~~ll~~g~IpVIsp-lg~~~~ 171 (279)
T cd04250 95 -VNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAP-VGVGED 171 (279)
T ss_pred -HHHHH-HHHHHHCCCCEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECC-CCCCCC
T ss_conf -46999-999997399854622666866999975555555566566456655227899999985797489646-416898
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCC----CCCHHHHHHHH
Q ss_conf 84244306862428999998847345565346144024584212344110567999999988403----11013788764
Q gi|254780873|r 143 NSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLG----AKVMQVRSVEL 218 (411)
Q Consensus 143 g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~G----akvlhp~~~~~ 218 (411)
|++-.+- .|..|+.+|.+|+|+++.+.|||+|||...+. +...+++|+.+|+.+|-.-| .-...=++..-
T Consensus 172 G~~~Nvn---aD~~A~~lA~aL~AdkLi~ltdv~Gv~~~~~~---~~~~i~~lt~~e~~~li~~~~i~ggM~pKl~aa~~ 245 (279)
T cd04250 172 GETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIE 245 (279)
T ss_pred CCEECCC---HHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC---CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 9786688---99999999998644949999588111058888---75400258999999999759768974999999999
Q ss_pred HHHCCC-EEEEECCC
Q ss_conf 331385-26761123
Q gi|254780873|r 219 AMLYKM-CLFVRSSF 232 (411)
Q Consensus 219 ~~~~~i-pi~i~ntf 232 (411)
+.++++ .++|-|--
T Consensus 246 Al~~GV~rvhIidg~ 260 (279)
T cd04250 246 ALEGGVKAAHIIDGR 260 (279)
T ss_pred HHHCCCCEEEEECCC
T ss_conf 998499979994698
No 62
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.62 E-value=1.9e-14 Score=117.10 Aligned_cols=236 Identities=24% Similarity=0.293 Sum_probs=161.1
Q ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHH-HHHHH
Q ss_conf 9669996085845888999999999999996799889998068730489999999861489-----98899999-98312
Q gi|254780873|r 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVV-ISTGE 74 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i-~s~GE 74 (411)
|+.+|.|+||+.+.+.+.+.++++.|......|.+++||+.+---+++.|.++..+-.... +..+++.+ ...+=
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G 81 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGG 81 (265)
T ss_pred CCEEEEEECCEEECCHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHCCCCCEEECCEECCCHHHHHHHHHHHHH
T ss_conf 96699998946441702789999999999977994799928956888999976999763497776798999999999988
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC--------CCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCE
Q ss_conf 999999999998439986356733245512133--------552-00012362100334310680586034333556842
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSL--------HGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSV 145 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~--------~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ 145 (411)
.+.-. +.+.|++.|.+|.-+.+.+-.+++-.. ++. .++..++++.+..+++++.+||+.= +|.+.+|++
T Consensus 82 ~vNk~-iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViap-ia~~~~G~~ 159 (265)
T COG0548 82 TVNKE-IVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAP-IAVDEDGET 159 (265)
T ss_pred HHHHH-HHHHHHHHCCCCEEEEECCCCEEEEEECCCCCCCCCCEEEEEEEECHHHHHHHHHCCCCEEEEC-CEECCCCCE
T ss_conf 88999-9999997187414555337878999986641343364044589878999999975798169807-427899978
Q ss_pred EEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHC-----CCCCHHHHHHHHHH
Q ss_conf 4430686242899999884734556534614402458421234411056799999998840-----31101378876433
Q gi|254780873|r 146 TTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSL-----GAKVMQVRSVELAM 220 (411)
Q Consensus 146 ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~-----Gakvlhp~~~~~~~ 220 (411)
-.+- .|+.|+.+|.+|+|+++...|||+||+..+|.. ..|++++-+|+.||.-. |+.. --++..-|.
T Consensus 160 ~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~~----s~i~~~~~~~~~~li~~~~i~~GMi~-Kv~~a~~A~ 231 (265)
T COG0548 160 LNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGDP----SLISELDAEEAEELIEQGIITGGMIP-KVEAALEAL 231 (265)
T ss_pred EEEC---HHHHHHHHHHHCCCCEEEEEECCHHHCCCCCCC----EEECCCCHHHHHHHHHCCCCCCCHHH-HHHHHHHHH
T ss_conf 7048---899999999973988299872770003489985----45535799999988624973486089-999999999
Q ss_pred HCCC-EEEEECCCCCCC------CCCCCCCCCC
Q ss_conf 1385-267611237777------7654354545
Q gi|254780873|r 221 LYKM-CLFVRSSFEDHG------QQEQLGTLIC 246 (411)
Q Consensus 221 ~~~i-pi~i~ntf~~~~------~~~~~GT~I~ 246 (411)
+.++ +.+|-|--.|+. .....||.|.
T Consensus 232 ~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~ 264 (265)
T COG0548 232 ESGVRRVHIISGRVPHSLLLELFTRDGIGTMIV 264 (265)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHCCCCCCEEEC
T ss_conf 849973899637786269999845798506825
No 63
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.61 E-value=9.5e-14 Score=112.47 Aligned_cols=225 Identities=20% Similarity=0.221 Sum_probs=151.5
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHH-HHHHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-----988999999-83129
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVI-STGEQ 75 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~-s~GE~ 75 (411)
|++|.||||+.+.+..-..+++..|.....-|.++++|+.+---++..|.+..-+-...+ ++..++.+. ....+
T Consensus 24 ktfVIk~gG~~~~d~~l~~~~~~DialL~~lGik~VlVHGgg~qI~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~vl~g~ 103 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGK 103 (284)
T ss_pred CEEEEEECCEEEECHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 98999989666637548999999999999889979998899668999999769984362883218878999999998778
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC-----CCC-CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEEC
Q ss_conf 9999999999843998635673324551213-----355-2000123621003343106805860343335568424430
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDS-----LHG-MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLG 149 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~-----~~~-~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlg 149 (411)
+...+.+ .|++.|.++..+.+.+..+++-. +|+ -.++..++++.|..+++.+.+||++= +|.+++|+.-.+-
T Consensus 104 vn~~lv~-~l~~~g~~a~gl~g~dg~~i~A~~~~~~D~g~vG~V~~Vd~~~I~~lL~~g~IpVIsp-ig~~~~G~~~Nvn 181 (284)
T CHL00202 104 VNKDLVG-SINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIAS-VAADHDGQTYNIN 181 (284)
T ss_pred HHHHHHH-HHHHCCCCCEEEECCCCCEEEEECCCCCCCCCCCCCEEECHHHHHHHHHCCCEEEEEC-CEECCCCCEEEEC
T ss_conf 9999999-9985699505531255766998358987744444412326799999970897599804-4067999989509
Q ss_pred CCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCC----CCCHHHHHHHHHHHCCC-
Q ss_conf 6862428999998847345565346144024584212344110567999999988403----11013788764331385-
Q gi|254780873|r 150 RGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLG----AKVMQVRSVELAMLYKM- 224 (411)
Q Consensus 150 RGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~G----akvlhp~~~~~~~~~~i- 224 (411)
+|..|+.+|.+|+|+++.+.|||+|||..-+ ..-..+++++.+|+.+|..-| .-...-++..-|.++++
T Consensus 182 ---aD~~A~~iA~aL~A~KLI~ltdv~Gvl~d~~---~~~~li~~l~~~e~~~l~~~~~i~~gm~pkl~aa~~Al~~GV~ 255 (284)
T CHL00202 182 ---ADVVAGEIAAKLNAEKLILLTDTPGILADIN---DPNSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVE 255 (284)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEECCCCEECCCC---CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf ---9999999999864196999988967106788---7653244489999999987598787469999999999985999
Q ss_pred EEEEECCCCC
Q ss_conf 2676112377
Q gi|254780873|r 225 CLFVRSSFED 234 (411)
Q Consensus 225 pi~i~ntf~~ 234 (411)
-++|-+-..|
T Consensus 256 rvhiidg~~~ 265 (284)
T CHL00202 256 AAHIIDGKEK 265 (284)
T ss_pred EEEEECCCCC
T ss_conf 8999258899
No 64
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.59 E-value=3.6e-15 Score=122.01 Aligned_cols=62 Identities=29% Similarity=0.416 Sum_probs=57.8
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 69999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
++||+||+ ++.++++++|+|.+|+++|||++||+ +||+||||||+++|.++|+++||++||.
T Consensus 2 aIislVG~-~~~~~~ia~r~F~al~~~gvNv~mIsQGaSe~NIs~vV~~~d~~~Av~alH~~FFE 65 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred CEEEEECC-CCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCEEEEECHHHHHHHHHHHHHHHCC
T ss_conf 38853423-43341789999999986898479871788734289998078999999999998619
No 65
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=99.59 E-value=6.4e-15 Score=120.33 Aligned_cols=63 Identities=41% Similarity=0.625 Sum_probs=60.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE--CCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 699996678667855799999999867982999970--784899997088999999999987097
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT--SEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss--Se~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
++||+||.||+++||+++|+|++|++++||+.|+++ ||++|||+|+++|.++|++.||++||+
T Consensus 1 a~vsivG~gm~~~~gi~a~~f~~L~~~~Inv~~isq~~se~~Is~vV~~~d~~~av~~Lh~~f~~ 65 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFFL 65 (65)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 98999888847780599999999998799879988358630599998489999999999987288
No 66
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.54 E-value=4.6e-13 Score=107.87 Aligned_cols=215 Identities=14% Similarity=0.172 Sum_probs=139.1
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHH-HHHHHH
Q ss_conf 99960858458889999999999999967-99889998068730489999999861489-----988999999-831299
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDR-GQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVI-STGEQV 76 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~-g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~-s~GE~~ 76 (411)
+|.||||+.+.+.+.+++.+..+...... +.++++|+.+---++..|.++.-+-...+ +..+++.+. ..+...
T Consensus 1 iVIK~GG~~l~~~~~~~~~~~~i~~l~~~~~~~vVlVHGggpqI~~~l~~~gi~~~f~~G~RvTd~~tl~vv~~vl~g~v 80 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTA 80 (252)
T ss_pred CEEEECCHHCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCCCCCCCCEEECCHHHHHHHHHHHCCCH
T ss_conf 98997824617888999999999999981898769987996899999997699972379656589999999999984615
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCC----CCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCC
Q ss_conf 99999999984399863567332455121----33552-00012362100334310680586034333556842443068
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTD----SLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRG 151 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~----~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRG 151 (411)
+ ..+...+++.|.++..+.+.+-.+++- .+++. .++..++++.+..+++.+.+||++= +|.+.+|++-.+-
T Consensus 81 n-~~lv~~l~~~g~~a~gl~~~dg~~~~~~~~~~dlG~vG~v~~Vn~~~i~~ll~~g~IPVisp-lg~~~~G~~~NiN-- 156 (252)
T cd04249 81 N-KQLMAQAIKAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISS-IGADDQGQLMNVN-- 156 (252)
T ss_pred H-HHHHHHHHHCCCCCCCCCCCCCCEEEECCCCCCCCCCCCEEEECHHHHHHHHCCCCCCEECC-CEECCCCCEEECC--
T ss_conf 9-99999997358986204456774687302366678655532355789999862898747635-3148999879759--
Q ss_pred CCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHC-----CCCCHHHHHHHHHHHCCC-E
Q ss_conf 6242899999884734556534614402458421234411056799999998840-----311013788764331385-2
Q gi|254780873|r 152 GSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSL-----GAKVMQVRSVELAMLYKM-C 225 (411)
Q Consensus 152 GSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~-----Gakvlhp~~~~~~~~~~i-p 225 (411)
.|..|+.+|.+|+|+ +.+.|||+|||.. +...|++++.+|+.+|-.- |+. ..-++..-|.+++. .
T Consensus 157 -aD~~A~~iA~aL~A~-Li~ltdv~Gvld~------~g~li~~l~~~e~~~li~~~~i~gGMi-pKl~aa~~Al~~gv~~ 227 (252)
T cd04249 157 -ADQAATAIAQLLNAD-LVLLSDVSGVLDA------DKQLISELNAKQAAELIEQGVITDGMI-VKVNAALDAAQSLRRG 227 (252)
T ss_pred -HHHHHHHHHHHHCCC-EEEEECCCCEECC------CCCCCCCCCHHHHHHHHHCCCCCCCCH-HHHHHHHHHHHCCCCE
T ss_conf -999999999971598-9999688613889------998942189999999997595479739-9999999999819987
Q ss_pred EEEECC
Q ss_conf 676112
Q gi|254780873|r 226 LFVRSS 231 (411)
Q Consensus 226 i~i~nt 231 (411)
++|-+-
T Consensus 228 v~I~~g 233 (252)
T cd04249 228 IDIASW 233 (252)
T ss_pred EEEECC
T ss_conf 999438
No 67
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=99.54 E-value=2.6e-14 Score=116.20 Aligned_cols=62 Identities=27% Similarity=0.373 Sum_probs=58.7
Q ss_pred EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 169999667866785579999999986798299997--0784899997088999999999987097
Q gi|254780873|r 345 LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 345 ~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+++|++||++|+.++|+++|+|++| ++|||+||+ +||.||||+|+++|.++|+++||++||.
T Consensus 1 lsiiavVG~~m~~~~Gva~~if~aL--~~inI~mIsqGaSe~Nis~lV~~~d~~~al~~Lh~~fFe 64 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDAL--EDINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLFE 64 (64)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHH--HCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 9199992676313777799999986--367959996068744499999667899999999998629
No 68
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.53 E-value=4.3e-13 Score=108.02 Aligned_cols=211 Identities=24% Similarity=0.334 Sum_probs=136.7
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHH---HHC------CC-CHHHHHHH-HHH
Q ss_conf 99960858458889999999999999967998899980687304899999998---614------89-98899999-983
Q gi|254780873|r 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ---VTS------ID-NARERDVV-IST 72 (411)
Q Consensus 4 iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~---~~~------~~-~~~~~d~i-~s~ 72 (411)
+|.||||+.+.+.++ ++..+. ..|.++++|+.+-.-++..|-+..-+ +.. .. +...++.+ ...
T Consensus 1 iVIK~GG~~l~d~~~---~~~~l~---~lG~~~VlVHGgg~qI~~~l~~~gi~~~fv~~~~Gl~~RvTd~~~l~~v~~~~ 74 (257)
T cd04251 1 IVVKIGGSVVSDLDK---VIDDIA---NFGERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM 74 (257)
T ss_pred CEEEECHHHHHCHHH---HHHHHH---HCCCCEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCEEECCHHHHHHHHHHH
T ss_conf 989989588769899---999999---75999899979977999999985999677417898620218989999999999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------------CC-CCCCCCCCCCCHHHHHHHCCEEEEEC
Q ss_conf 12999999999998439986356733245512133----------------55-20001236210033431068058603
Q gi|254780873|r 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSL----------------HG-MARICRVDEKKIVTHLKKKQVVVITG 135 (411)
Q Consensus 73 GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~----------------~~-~a~~~~~~~~~l~~~l~~~~v~v~~G 135 (411)
|+ ++..+ .+.|++.|+++..+.+.+..+++-.. ++ -.++..++.+.+..+++.+.+||++
T Consensus 75 g~-vn~~l-v~~l~~~g~~a~glsg~d~~~~~~~~~~~~~~~~~g~~~~id~g~vG~v~~V~~~~i~~ll~~g~iPVis- 151 (257)
T cd04251 75 GL-INKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVS- 151 (257)
T ss_pred HH-HHHHH-HHHHHHCCCCCCCCCCCCCCEEEEEECCCEEECCCCCCCCCCCCCEEEEEEECHHHHHHHHHCCCCEEEC-
T ss_conf 99-99999-9999848998652226667368985125244246786010457976779898789999998489945866-
Q ss_pred CCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHH---CCCCCHH
Q ss_conf 4333556842443068624289999988473455653461440245842123441105679999999884---0311013
Q gi|254780873|r 136 FQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSS---LGAKVMQ 212 (411)
Q Consensus 136 f~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~---~Gakvlh 212 (411)
=+|.+++|++-.+ -.|..|+.+|.+|+|+++.+.|||+||| .| .++|++++.+|+.+|-. -|+ .-.
T Consensus 152 pig~~~~G~~~Nv---naD~~A~~iA~aL~A~kLI~ltdv~Gvl-~d------g~li~~l~~~e~~~li~~i~gGM-~pK 220 (257)
T cd04251 152 PVAYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLY-LD------GRVIERITVSDAESLLEKAGGGM-KRK 220 (257)
T ss_pred CCCCCCCCCEECC---CHHHHHHHHHHHCCCCEEEEEECCCEEE-CC------CEECCCCCHHHHHHHHHHHCCCH-HHH
T ss_conf 7666887607428---7799999999980999699996884042-49------84536589999999998734853-999
Q ss_pred HHHHHHHHHCCCE-EEEECCCCC
Q ss_conf 7887643313852-676112377
Q gi|254780873|r 213 VRSVELAMLYKMC-LFVRSSFED 234 (411)
Q Consensus 213 p~~~~~~~~~~ip-i~i~ntf~~ 234 (411)
=++..-+.+++++ ++|-|-..|
T Consensus 221 l~aa~~A~~~GV~~v~Ii~g~~~ 243 (257)
T cd04251 221 LLAAAEAVEGGVREVVIGDARAD 243 (257)
T ss_pred HHHHHHHHHCCCCEEEEECCCCC
T ss_conf 99999999809997999079998
No 69
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.51 E-value=2.1e-12 Score=103.38 Aligned_cols=219 Identities=21% Similarity=0.253 Sum_probs=136.8
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHH-HHHHHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-----98899999-983129
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVV-ISTGEQ 75 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i-~s~GE~ 75 (411)
+++|.|+||+.+.+. .+++.+..|......|.++++|+..---++..|-.+.-+-...+ +...++.+ ...|+
T Consensus 19 kt~VIK~GG~~~~~~-~l~~~~~di~lL~~~Gi~~VlVHGGG~~I~~~l~~~gi~~~fv~G~RVTd~~tl~vv~~~~G~- 96 (280)
T cd04237 19 KTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALECVKEAAGA- 96 (280)
T ss_pred CEEEEEECCHHHCCH-HHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHH-
T ss_conf 989999896330774-499999999999988996999928986779999986997462178777999999999999999-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCC-------------CCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCC
Q ss_conf 999999999984399863567332-------------45512133552-0001236210033431068058603433355
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQ-------------IPIMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSH 141 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~-------------~~i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~ 141 (411)
++..+.+ .|+ +|..+..+.+.. .++...-+++. .++..++++.|..+++.+.+||++= +|.+.
T Consensus 97 vn~~i~a-~ls-~g~~~~g~~g~~~~~~~g~~i~a~p~g~~dgiD~G~vG~v~~Vn~~~l~~ll~~~~iPVIsp-ig~~~ 173 (280)
T cd04237 97 VRLEIEA-LLS-MGLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSP-LGYSP 173 (280)
T ss_pred HHHHHHH-HHH-HCCCCCCCCCCCCEEECCCEEEEEECCCCCCCCCCCCCCCCEEEHHHHHHHHHCCCEEEEEC-CEECC
T ss_conf 9999999-997-05343565355723405865898886531474446798302664999986875896589604-31889
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHC-CC--CCHHH--HHH
Q ss_conf 68424430686242899999884734556534614402458421234411056799999998840-31--10137--887
Q gi|254780873|r 142 DNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSL-GA--KVMQV--RSV 216 (411)
Q Consensus 142 ~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~-Ga--kvlhp--~~~ 216 (411)
+|++-.+- .|..|+.+|.+|+|+++.+.|||+|++.. +-.++++++.+|+.+|-.- |. .=+-| ++.
T Consensus 174 ~G~~~NvN---AD~~A~~iA~aL~A~kLi~ltdv~Gvl~~------~~~~i~~l~~~e~~~ll~~~~~i~~GMipKl~~a 244 (280)
T cd04237 174 TGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAA 244 (280)
T ss_pred CCCEEEEC---HHHHHHHHHHHHHHCEEEEECCCCCEECC------CCCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHH
T ss_conf 99887008---99999999999744709987188832789------9988650499999999984798887789999999
Q ss_pred HHHHHCCCE-EEEECCCCC
Q ss_conf 643313852-676112377
Q gi|254780873|r 217 ELAMLYKMC-LFVRSSFED 234 (411)
Q Consensus 217 ~~~~~~~ip-i~i~ntf~~ 234 (411)
.-|.+++++ ++|-+--.|
T Consensus 245 ~~Al~~GV~~vhIidg~~~ 263 (280)
T cd04237 245 IEACRGGVPRVHLISYAED 263 (280)
T ss_pred HHHHHCCCCEEEECCCCCC
T ss_conf 9999839998999059999
No 70
>TIGR00761 argB acetylglutamate kinase; InterPro: IPR004662 N -Acetylglutamate (NAG) fulfils distinct biological roles in lower and higher organisms. In prokaryotes, lower eukaryotes and plants it is the first intermediate in the biosynthesis of arginine, whereas in ureotelic (excreting nitrogen mostly in the form of urea) vertebrates, it is an essential allosteric cofactor for carbamyl phosphate synthetase I (CPSI), the first enzyme of the urea cycle. The pathway that leads from glutamate to arginine in lower organisms employs eight steps, starting with the acetylation of glutamate to form NAG. In these species, NAG can be produced by two enzymatic reactions: one catalysed by NAG synthase (NAGS) and the other by ornithine acetyltransferase (OAT). In ureotelic species, NAG is produced exclusively by NAGS. In lower organisms, NAGS is feedback-inhibited by L-arginine, whereas mammalian NAGS activity is significantly enhanced by this amino acid. The NAGS genes of bacteria, fungi and mammals are more diverse than other arginine-biosynthesis and urea-cycle genes. The evolutionary relationship between the distinctly different roles of NAG and its metabolism in lower and higher organisms remains to be determined . The pathway from glutamate to arginine is: NAGS; N-acetylglutamate synthase (2.3.1.1 from EC) (glutamate to N-acetylglutamate) NAGK; N-acetylglutamate kinase (2.7.2.8 from EC) (N-acetylglutamate to N-acetylglutamate-5P) NAGSA; N-acetyl-gamma-glutamyl-phosphate reductase (1.2.1.38 from EC) (N-acetylglutamate-5P to N-acetylglumate semialdehyde) Acetylornithine aminotransferase (2.6.1.11 from EC) (N-acetylglumate semialdehyde to N-acetylornithine) Acetylornithine deacetylase (3.5.1.16 from EC) (N-acetylornithine to ornithine) Arginase (3.5.3.1 from EC) (ornithine to arginine) This entry describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts as well as some, as yet, uncharacterised proteins.; GO: 0003991 acetylglutamate kinase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=99.50 E-value=2e-13 Score=110.32 Aligned_cols=210 Identities=24% Similarity=0.293 Sum_probs=147.2
Q ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCC--HHHHHHHHHHHHHCCCCH-----HH-----HHHH
Q ss_conf 699960858458889999999999999967998-8999806873--048999999986148998-----89-----9999
Q gi|254780873|r 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQE-VAMVVSAMSG--ETDRLAELCRQVTSIDNA-----RE-----RDVV 69 (411)
Q Consensus 3 ~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~-~ivVvSA~~g--~Td~L~~l~~~~~~~~~~-----~~-----~d~i 69 (411)
.+|.|.||+.+.|.+-..++++.+...+..|.+ ++||+. || +|..|.++.-+......+ |- ++..
T Consensus 1 ~~ViK~GG~~~~~~~~~~~~~~~~~~l~~~g~~PpviVHG--GGp~in~~~~~lgi~~~f~~Gl~G~~~RvTd~~tl~v~ 78 (254)
T TIGR00761 1 TIVIKIGGSAISNDELLEEFFSDIAFLRAVGIKPPVIVHG--GGPEINELLEALGIEPEFKNGLSGVVFRVTDKETLEVV 78 (254)
T ss_pred CEEEEECCEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEC--CCHHHHHHHHHCCCCCEEECCCCCEEEECCCHHHHHHH
T ss_conf 9789844734104124699999999999729855389837--85268889983289836766887203752788999998
Q ss_pred -HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC----CCCCC-------------CCCCCCCCCHHHHHHHCCEE
Q ss_conf -9831299999999999843998635673324551213----35520-------------00123621003343106805
Q gi|254780873|r 70 -ISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDS----LHGMA-------------RICRVDEKKIVTHLKKKQVV 131 (411)
Q Consensus 70 -~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~----~~~~a-------------~~~~~~~~~l~~~l~~~~v~ 131 (411)
..+=++.+..|++ .|+++|++|+-|++.|-.+++=. ..... ++..++++.+..+++.|.+|
T Consensus 79 ~~vL~g~vN~~LV~-~l~~~g~~A~GL~g~Dg~L~~a~rk~~~~~~~~~~vv~~~~G~VG~~~~Vn~~~~~~Ll~~G~~P 157 (254)
T TIGR00761 79 EMVLIGDVNKELVA-LLNKHGINAIGLTGLDGQLFTADRKTASLDKEVIKVVAIDLGYVGEIKKVNKALLEALLKAGIIP 157 (254)
T ss_pred HHHHHHHHHHHHHH-HHHHCCCCEEEECCCCCCEEEEEEEEEEEEECCCEEEEEECCCEEEECCCCHHHHHHHHHCCCCC
T ss_conf 99983646699999-99967992863113577357999878988515768999974841231327889999999649851
Q ss_pred EEECCCCCC-CCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCH-HHHHHHHHC---
Q ss_conf 860343335-568424430686242899999884734556534614402458421234411056799-999998840---
Q gi|254780873|r 132 VITGFQGLS-HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF-EEMLEMSSL--- 206 (411)
Q Consensus 132 v~~Gf~g~~-~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy-~Ea~eLa~~--- 206 (411)
|++= +|.| .+|++-..- -|+.|+.+|.+|+|+++...|||+||+. ++-+...+|++|+. +|+.+|-..
T Consensus 158 Vi~s-la~~~~~g~~lNvN---AD~aA~~lA~~L~A~kL~~LtDv~Gi~~---~y~d~~~~i~~l~~D~~~~~l~~~~~i 230 (254)
T TIGR00761 158 VIAS-LALTNAEGQALNVN---ADTAAGELAAALGAEKLVLLTDVPGILN---GYPDKQSLISELPLDEEIEQLIKQGVI 230 (254)
T ss_pred EECC-CCCCHHCCCEEECC---HHHHHHHHHHHCCCCEEEEECCCHHHHC---CCCCCCCEECCCCHHHHHHHHHHHHHH
T ss_conf 7716-65862318777067---7799999998609953888417403225---888746140226867999987752223
Q ss_pred --CC--CCHHHHHHHHHHHCCCE
Q ss_conf --31--10137887643313852
Q gi|254780873|r 207 --GA--KVMQVRSVELAMLYKMC 225 (411)
Q Consensus 207 --Ga--kvlhp~~~~~~~~~~ip 225 (411)
|| || .+..-|.+.+++
T Consensus 231 ~gGMipKV---~~a~~A~~~Gv~ 250 (254)
T TIGR00761 231 KGGMIPKV---NAALEALESGVK 250 (254)
T ss_pred CCCCHHHH---HHHHHHHHCCCC
T ss_conf 15985789---999999973888
No 71
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.49 E-value=2.3e-12 Score=103.08 Aligned_cols=263 Identities=20% Similarity=0.245 Sum_probs=161.5
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHH-HHHHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-----988999999-83129
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVI-STGEQ 75 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~-s~GE~ 75 (411)
++.|.||||..+.+. .+.+++..|.-...-|.++|+|..+---++..|-+..-+-.... +...++.+. ..|+
T Consensus 26 ktfVI~~gG~a~~~~-~~~~~~~DIaLL~slGIr~VlVHGggpqI~~~L~~~gi~s~f~~G~RVTD~~tl~~v~~v~G~- 103 (441)
T PRK05279 26 KTFVIMLGGEAIAHG-NFSNIVNDIALLHSLGIRLVLVHGARPQIEEQLAAHGIEPRYHKGLRITDAAALECVKQAAGE- 103 (441)
T ss_pred CEEEEEECCEECCCC-CHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHH-
T ss_conf 989999897203683-589999999999868976999879977889999976998551399136999999999999999-
Q ss_pred HHHHHHHHHHHHCCCCCCCCC-------------CCCCCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCC
Q ss_conf 999999999984399863567-------------33245512133552-0001236210033431068058603433355
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQ-------------GWQIPIMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSH 141 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~-------------~~~~~i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~ 141 (411)
++..+.+.. ++|++...+. ++..++..--+++. .++..++++.+...++.+.|||++= +|.++
T Consensus 104 v~~~I~a~L--s~gl~nspm~g~~i~v~sGn~i~A~p~Gv~dGvD~g~vG~V~~Vd~~~I~~~L~~g~Ipvisp-lG~s~ 180 (441)
T PRK05279 104 LRLDIEARL--SMGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYCHTGEVRRIDTEAIRRQLDNGAIVLLSP-LGYSP 180 (441)
T ss_pred HHHHHHHHH--HCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCCCCCEEEEECHHHHHHHHHCCCEEEECC-EEECC
T ss_conf 999999998--343678755577246754866898763531375667541587973899999997898299866-46389
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHH-CCCCCHH------HH
Q ss_conf 6842443068624289999988473455653461440245842123441105679999999884-0311013------78
Q gi|254780873|r 142 DNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSS-LGAKVMQ------VR 214 (411)
Q Consensus 142 ~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~-~Gakvlh------p~ 214 (411)
+|++-.+- +|..|+.+|.+|+|+.+...||++||+.. +..++++|+.+||.+|-. .....++ -+
T Consensus 181 ~Ge~fNin---ad~vA~~iA~aL~A~KLI~ltd~~Gi~d~------~g~li~~lt~~ea~~ll~~~~~~~i~~g~~~kl~ 251 (441)
T PRK05279 181 TGESFNLT---MEEVATQVAIALKADKLIFFTESQGILDE------DGELIRELSPNEAQALLERLEQGDLNSGTARFLR 251 (441)
T ss_pred CCCEECCC---HHHHHHHHHHHCCCCEEEEECCCCCCCCC------CCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHH
T ss_conf 99986669---99999999997699889985288764289------9987530799999999975317888845699999
Q ss_pred HHHHHHHCCC-EEEEECCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHH
Q ss_conf 8764331385-267611237777------765435454542101222310111234662000127750004841000145
Q gi|254780873|r 215 SVELAMLYKM-CLFVRSSFEDHG------QQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSP 287 (411)
Q Consensus 215 ~~~~~~~~~i-pi~i~ntf~~~~------~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~ 287 (411)
+..-|.+.++ -+++-+--.|+. ..+..||+|+.++ .+. ++. +..+| .+| .-++.+.
T Consensus 252 ~a~~A~~~GV~RvHiIdg~~~gaLL~ELFT~~GvGTmI~~~~--~e~--iR~-A~~~D-----------v~~-Il~Li~P 314 (441)
T PRK05279 252 AAVKACRGGVPRSHLISYAEDGALLQELFTRDGIGTQIVMES--LEQ--LRR-ATIDD-----------VGG-ILELIRP 314 (441)
T ss_pred HHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCEEEEEECCH--HHH--HCC-CCHHH-----------HHH-HHHHHHH
T ss_conf 999999839886997568788418877625887189885473--888--356-86767-----------999-9999788
Q ss_pred HHHCCCCE
Q ss_conf 54128501
Q gi|254780873|r 288 LAEAHINI 295 (411)
Q Consensus 288 La~~~I~V 295 (411)
|++.|+=|
T Consensus 315 le~~G~Lv 322 (441)
T PRK05279 315 LEEQGILV 322 (441)
T ss_pred HHHCCCCC
T ss_conf 98679700
No 72
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=99.44 E-value=6.4e-13 Score=106.87 Aligned_cols=64 Identities=23% Similarity=0.339 Sum_probs=59.8
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE--CCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 91699996678667855799999999867982999970--784899997088999999999987097
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT--SEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss--Se~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
.+|+||+||++|+ .||+++|.|.+|+++|||+.|+++ ++.|++|||+++|+++|+++||++||.
T Consensus 1 ~vaiVs~IG~~m~-~~gvlar~~~AL~~~gInv~a~~Q~~r~vnvqFVV~~~d~~~Ai~aLH~al~E 66 (66)
T cd04915 1 RVAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE 66 (66)
T ss_pred CEEEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEEECCCCEEEEEEEEEHHHHHHHHHHHHHHHCC
T ss_conf 9689997157887-44279999999998899789886478503689998279999999999998719
No 73
>KOG1154 consensus
Probab=99.44 E-value=1.2e-12 Score=105.03 Aligned_cols=217 Identities=25% Similarity=0.319 Sum_probs=143.9
Q ss_pred CEEEEEECCCCCCCH-------HHHHHHHHHHHHHHHCCCCEEEEEE---CCCCHHHHHHHH----HHHH-HCCCCHHHH
Q ss_conf 669996085845888-------9999999999999967998899980---687304899999----9986-148998899
Q gi|254780873|r 2 ARIVMKFGGTSVANI-------DCIRSAALHVKREVDRGQEVAMVVS---AMSGETDRLAEL----CRQV-TSIDNARER 66 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~-------~~i~~v~~~i~~~~~~g~~~ivVvS---A~~g~Td~L~~l----~~~~-~~~~~~~~~ 66 (411)
++||.|.|-+++-+. .++-.+++.+.+..+.|+++++|.| |+|.-.=+...+ .++. .......|.
T Consensus 10 ~rIVVKLGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~~l~e~ 89 (285)
T KOG1154 10 YRIVVKLGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQSELAEK 89 (285)
T ss_pred EEEEEEECCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHH
T ss_conf 49999814468877987540478999999999999856855999923525550777510203435678752675411467
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCC
Q ss_conf 999983129999999999---98439986356733245512133552000123621003343106805860343335568
Q gi|254780873|r 67 DVVISTGEQVSSGLMVLA---LQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDN 143 (411)
Q Consensus 67 d~i~s~GE~~s~~l~a~~---l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g 143 (411)
-...+.|. ..||+.| +.+.|+.+. |+ ++|+.++.+-+....-.+.+.++|.-+.|||+ |+++
T Consensus 90 rA~AAvGQ---~~Lmalye~lF~Qy~~~~A-----Qv-LvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIv------NeND 154 (285)
T KOG1154 90 RACAAVGQ---SGLMALYETLFTQYGITIA-----QV-LVTRNDILDEQQRKNLQNTISELLSMNVIPIV------NEND 154 (285)
T ss_pred HHHHHHCC---CHHHHHHHHHHHHHCCEEE-----EE-EECCCCHHHHHHHHHHHHHHHHHHHCCCEEEE------CCCC
T ss_conf 88887275---2189999999998375300-----35-54164322089998899999999857924454------3788
Q ss_pred CEEE--ECCCC---CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCC--C----H-
Q ss_conf 4244--30686---242899999884734556534614402458421234411056799999998840311--0----1-
Q gi|254780873|r 144 SVTT--LGRGG---SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAK--V----M- 211 (411)
Q Consensus 144 ~~tt--lgRGG---SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gak--v----l- 211 (411)
.+.+ .-+|- .|.-||++|+.++||.+.+.|||||+|| .|-.-+++++|+..+..+..-=..||.| | +
T Consensus 155 avs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt-~PPd~~~~~li~~~~~~~~~v~~tfG~~S~vGtGGM~ 233 (285)
T KOG1154 155 AVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYT-GPPDADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGME 233 (285)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC-CCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 647763246888765179999998742677999852561335-9998675334421046778876446666765767611
Q ss_pred -HHHHHHHHHHCCCEEEEECCCCC
Q ss_conf -37887643313852676112377
Q gi|254780873|r 212 -QVRSVELAMLYKMCLFVRSSFED 234 (411)
Q Consensus 212 -hp~~~~~~~~~~ipi~i~ntf~~ 234 (411)
.-.|...+...++++.|.|...|
T Consensus 234 tKv~AA~~A~~~Gv~viI~~g~~p 257 (285)
T KOG1154 234 TKVKAAVNALNAGVSVIITNGDAP 257 (285)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCH
T ss_conf 558888777607914999479866
No 74
>PRK12353 carbamate kinase; Reviewed
Probab=99.43 E-value=4.6e-12 Score=101.13 Aligned_cols=220 Identities=20% Similarity=0.266 Sum_probs=127.6
Q ss_pred CCEEEEEECCCCCCCH--------HHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 9669996085845888--------99999999999999679988999806873--0489999999861489988999999
Q gi|254780873|r 1 MARIVMKFGGTSVANI--------DCIRSAALHVKREVDRGQEVAMVVSAMSG--ETDRLAELCRQVTSIDNARERDVVI 70 (411)
Q Consensus 1 M~~iV~KfGGtSv~~~--------~~i~~v~~~i~~~~~~g~~~ivVvSA~~g--~Td~L~~l~~~~~~~~~~~~~d~i~ 70 (411)
||+||.||||.++.+. +.++..+..|....+.|+++++|+. +| +-+.|++............-+|...
T Consensus 2 ~k~IVIalGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~G~~~VitHG--nGPQVG~lll~~~~~~~~~~~~~pld~~~ 79 (312)
T PRK12353 2 MKKIVVALGGNALGSSDGSAEEQLEAVKKTAKSLVDLIEEGHEVVITHG--NGPQVGNLLLQQAAADSEKNPAMPLDVCV 79 (312)
T ss_pred CCEEEEEECHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CCHHHHHHHHHHHHHCCCCCCCCEECCHH
T ss_conf 8449998372531899999899999999999999999988996999838--84488999998665426888982110143
Q ss_pred --HH---HHHHHHHHHHHHHHHCCCCCCCC--------CCCC---------------------------CCCCCCCCCCC
Q ss_conf --83---12999999999998439986356--------7332---------------------------45512133552
Q gi|254780873|r 71 --ST---GEQVSSGLMVLALQSLGIQAISL--------QGWQ---------------------------IPIMTDSLHGM 110 (411)
Q Consensus 71 --s~---GE~~s~~l~a~~l~~~G~~a~~l--------~~~~---------------------------~~i~t~~~~~~ 110 (411)
|. |..+...+. ..|..+|++.... ++.| |.+.-|...+.
T Consensus 80 a~tqG~IGy~l~q~l~-~~l~~~g~~~~v~tlvtqv~Vd~~Dpaf~~ptKpIG~~y~~~ea~~l~~~~g~~~~~d~g~G~ 158 (312)
T PRK12353 80 AMSQGYIGYWLQNALD-NELLKRGINKPVATVVTQVEVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGWTFKEDAGRGY 158 (312)
T ss_pred HHCCCHHHHHHHHHHH-HHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEECCCCCE
T ss_conf 4303069999999999-999845899864899989988787600027887656656899999999727974424388862
Q ss_pred CCC------CC-CCCCCHHHHHHHCCEEEEECCCCC--CCCCCEEEECCCCC-----CHHHHHHHHHHCHHHHHHHCCHH
Q ss_conf 000------12-362100334310680586034333--55684244306862-----42899999884734556534614
Q gi|254780873|r 111 ARI------CR-VDEKKIVTHLKKKQVVVITGFQGL--SHDNSVTTLGRGGS-----DTSAVAIAAAIKADRCDIYTDVC 176 (411)
Q Consensus 111 a~~------~~-~~~~~l~~~l~~~~v~v~~Gf~g~--~~~g~~ttlgRGGS-----D~tA~~ia~~l~A~~~~i~tdV~ 176 (411)
.++ .+ ++.+.+..+++.+.+||++|--|. ..++.. -+|-+ |++|+++|..|+||.+.|.|||+
T Consensus 159 RRVV~SP~P~~iie~~~I~~L~~~g~IvIa~GGGGIPV~~~~g~---~~Gv~aVIdkDlaaa~LA~~l~Ad~lliLTdV~ 235 (312)
T PRK12353 159 RRVVPSPKPVDIIEKEAIKTLVEAGVVVIAAGGGGIPVVREGGG---LKGVEAVIDKDFASALLAELIDADLLIILTAVD 235 (312)
T ss_pred EEEECCCCCCCEECHHHHHHHHHCCCEEEECCCCCCCEECCCCC---EECCEEEECCCHHHHHHHHHCCCCEEEEEECCH
T ss_conf 77506999730223999999997897899648887765767994---466133315338889999971998799971634
Q ss_pred HHEECCCCCCCCCCEECCCCHHHHHHHHH---C-----CCCCHHHHHHHHHHHCCC-EEEEEC
Q ss_conf 40245842123441105679999999884---0-----311013788764331385-267611
Q gi|254780873|r 177 GIYTTDPRIEPKAHLMKKISFEEMLEMSS---L-----GAKVMQVRSVELAMLYKM-CLFVRS 230 (411)
Q Consensus 177 Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~---~-----Gakvlhp~~~~~~~~~~i-pi~i~n 230 (411)
|||-.-. -|+.+.|+++|.+|+.++.. | |-||- -|++.+...+- ...|.+
T Consensus 236 ~V~~n~g--~p~q~~l~~lt~~e~~~~~~~G~F~~GsM~PKVe--Aai~fv~~gg~~~aiIt~ 294 (312)
T PRK12353 236 KVYINFG--KPNQKKLDRVTVSELEKYIEEGQFAPGSMLPKVE--AAISFVESGGKRKAIITS 294 (312)
T ss_pred HHHHCCC--CCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHH--HHHHHHHHCCCCEEEECC
T ss_conf 6765289--9861332138899999999779988888269999--999999948983799898
No 75
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.35 E-value=3.3e-11 Score=95.37 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=123.1
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHH-HHHHHHHHH
Q ss_conf 996085845888999999999999996799889998068730489999999861489-----98899999-983129999
Q gi|254780873|r 5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVV-ISTGEQVSS 78 (411)
Q Consensus 5 V~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i-~s~GE~~s~ 78 (411)
|.||||..+.+ .+.+++..|......|.++++|..+---++..|-++.-+-...+ +..+++.+ ...+ ..+.
T Consensus 2 VIk~GG~~~~d--~~~~l~~di~lL~~lGi~~VlVHGgg~qI~~~l~~~gi~~~~~~G~RvTd~~~l~~v~~vl~-~vn~ 78 (248)
T cd04252 2 VIKVGGAIIED--DLDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENL 78 (248)
T ss_pred EEEECCHHHHH--HHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHH-HHHH
T ss_conf 79999177652--19999999999998899599991898788899998699853138844689899999999999-9999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCC--CCCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 9999999843998635673324--5512133552-000123621003343106805860343335568424430686242
Q gi|254780873|r 79 GLMVLALQSLGIQAISLQGWQI--PIMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDT 155 (411)
Q Consensus 79 ~l~a~~l~~~G~~a~~l~~~~~--~i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~ 155 (411)
.+.+ .|++.|.++..+.+.-. ..+....|+. .++..++.+.+..+|+.+.+||++= +|.+++|++-.+- +|.
T Consensus 79 ~lv~-~l~~~g~~a~~i~g~~~~a~~~~~~~~g~vG~v~~Vd~~~i~~lL~~g~Ipvisp-ig~~~~G~~~Nvn---aD~ 153 (248)
T cd04252 79 KLVE-ALERNGARARPITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTS-LAETPSGQLLNVN---ADV 153 (248)
T ss_pred HHHH-HHHHCCCCEEEECCCCEEEEECCCCCCCCCCCEEEECHHHHHHHHHCCCCEEEEE-EEECCCCCEEEEC---HHH
T ss_conf 9999-9996599738603763688866765678432258982999999985899448851-4788999989879---999
Q ss_pred HHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHH-HHHHHH
Q ss_conf 8999998847345565346144024584212344110567999-999988
Q gi|254780873|r 156 SAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE-EMLEMS 204 (411)
Q Consensus 156 tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~-Ea~eLa 204 (411)
.|+.+|.+|+|+++.+.|||+||+..|.+ ++++++.+ |+.+|-
T Consensus 154 ~A~~iA~aL~A~kLi~ltdv~Gv~d~~g~------~i~~l~~~~~~~~l~ 197 (248)
T cd04252 154 AAGELARVLEPLKIVFLNETGGLLDGTGK------KISAINLDEEYDDLM 197 (248)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCCCCCCC------CCCCCCHHHHHHHHH
T ss_conf 99999997599989999588301799999------974278899999998
No 76
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=99.31 E-value=1.8e-12 Score=103.86 Aligned_cols=74 Identities=54% Similarity=0.858 Sum_probs=68.1
Q ss_pred CCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 200012775000484100014554128501112344322223331012123024776688789888605961589
Q gi|254780873|r 266 EAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQ 340 (411)
Q Consensus 266 i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~ 340 (411)
+++|++.++|+.||++++||+.|++++||||||.|+.++++ ..+|+||++++|++++..+|++.++++++..+.
T Consensus 1 qArvtl~gvpd~PG~aa~iF~~La~~~InVDmIvQ~~~~~~-~~disFTv~~~dl~~a~~vl~~~~~~l~~~~v~ 74 (75)
T cd04913 1 QAKITLRGVPDKPGVAAKIFGALAEANINVDMIVQNVSRDG-TTDISFTVPKSDLKKALAVLEKLKKELGAEEVE 74 (75)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC-CEEEEEEECHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 95999828999996699999999985984799986167899-458999904999999999999999864972345
No 77
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.28 E-value=1.2e-10 Score=91.65 Aligned_cols=190 Identities=23% Similarity=0.282 Sum_probs=109.6
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9960858458889999999999999967998899980687304-899999998614899889999998312999999999
Q gi|254780873|r 5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGET-DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVL 83 (411)
Q Consensus 5 V~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~T-d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~ 83 (411)
|.|+|||=..+..++ .+.+... .+.++++|+. ||.. |...++.++..-.+. .-+.+. .+.+..++.
T Consensus 1 VvKiGGSL~~~~~~l---l~~l~~~--~~~~v~IVpG--GG~fAd~vR~~~~~~~~~d~--~aH~mA----i~Am~~~a~ 67 (203)
T cd04240 1 VVKIGGSLIREAVRL---LRWLKTL--SGGGVVIVPG--GGPFADVVRRYQERKGLSDA--AAHWMA----ILAMEQYGY 67 (203)
T ss_pred CEEEEEECCCCHHHH---HHHHHHH--CCCCEEEEEC--CHHHHHHHHHHHHHCCCCHH--HHHHHH----HHHHHHHHH
T ss_conf 979820564668999---9999983--5997899979--80899999999998299878--999999----999999999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCC-CCCCC-----CCEEEECCCCCCHHH
Q ss_conf 998439986356733245512133552000123621003343106805860343-33556-----842443068624289
Q gi|254780873|r 84 ALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQ-GLSHD-----NSVTTLGRGGSDTSA 157 (411)
Q Consensus 84 ~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~-g~~~~-----g~~ttlgRGGSD~tA 157 (411)
+|++..-... .. +...+.+.+..+.++|.--+- -...+ =++|+ |+-|
T Consensus 68 ll~~~~~~~~---~~------------------~~~~~~~~~~~~~~~v~lP~~~l~~~~~lp~sWdvts------Ds~a 120 (203)
T cd04240 68 LLADLEPRLV---AR------------------TLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTS------DSIA 120 (203)
T ss_pred HHHHHCCHHH---CC------------------CHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCCCCCH------HHHH
T ss_conf 9996013101---04------------------6477999973389158711587515898887877661------8999
Q ss_pred HHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCC-
Q ss_conf 9999884734556534614402458421234411056799999998840311013788764331385267611237777-
Q gi|254780873|r 158 VAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHG- 236 (411)
Q Consensus 158 ~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~- 236 (411)
+.+|..++|+++.+.|||||||+.||| ++++++..|+. |..++.|-+...+.++++|++|-|-.+|..
T Consensus 121 ~~~A~~l~a~~li~~~~vdGiy~~~~k------l~~~i~~~~l~-----~~~~VD~~~~~~~~~~~i~~~VvnG~~p~~i 189 (203)
T cd04240 121 AWLAKKLGAKRLVIVTDVDGIYEKDGK------LVNEIAAAELL-----GETSVDPAFPRLLTKYGIRCYVVNGDDPERV 189 (203)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCCCHH------HHHHCCHHHHC-----CCCCHHHHHHHHHHHCCCEEEEECCCCHHHH
T ss_conf 999997598858998567755187505------54115898864-----8874107789999976963999879987999
Q ss_pred -----CCCCCCCCC
Q ss_conf -----765435454
Q gi|254780873|r 237 -----QQEQLGTLI 245 (411)
Q Consensus 237 -----~~~~~GT~I 245 (411)
..+..||.|
T Consensus 190 ~~~l~g~~~~GT~I 203 (203)
T cd04240 190 LAALRGREGVGTRI 203 (203)
T ss_pred HHHHCCCCCCCCCC
T ss_conf 99986898798579
No 78
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.28 E-value=1.3e-10 Score=91.34 Aligned_cols=219 Identities=24% Similarity=0.313 Sum_probs=138.3
Q ss_pred CCEEEEEECCCCCCC--------HHHHHHHHHHHHHHHHCCCCEEEEEEC--CCCHHHHHHHHHHHHHC--CC---C---
Q ss_conf 966999608584588--------899999999999999679988999806--87304899999998614--89---9---
Q gi|254780873|r 1 MARIVMKFGGTSVAN--------IDCIRSAALHVKREVDRGQEVAMVVSA--MSGETDRLAELCRQVTS--ID---N--- 62 (411)
Q Consensus 1 M~~iV~KfGGtSv~~--------~~~i~~v~~~i~~~~~~g~~~ivVvSA--~~g~Td~L~~l~~~~~~--~~---~--- 62 (411)
|. +|+|+|||-+.+ .+++++++..|.+ ..-.+.++|+.| +|-. .+.+... .. +
T Consensus 1 M~-~IlKlGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp------~Ak~~~~~~~~~~~s~~G 71 (252)
T COG1608 1 MV-IILKLGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHP------AAKEFGLEGLKNYLSPLG 71 (252)
T ss_pred CE-EEEEECCEEEECCCCCCHHHHHHHHHHHHHHHC--CCCCCEEEEECCCCCCCH------HHHHHCCCCCCCCCCCCC
T ss_conf 91-899955616525887321118999999999845--995438999458665678------899707654446667434
Q ss_pred -HH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCC
Q ss_conf -88-9999998312999999999998439986356733245512133552000123621003343106805860343335
Q gi|254780873|r 63 -AR-ERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLS 140 (411)
Q Consensus 63 -~~-~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~ 140 (411)
.. .+++ +.+++ .++..|.+.|+.+...-|.... .-+.++.....+.+..+++.+-+|+.-|=+-.+
T Consensus 72 ~~~~~~am-----~~L~~-~V~~~l~~~Gv~av~~~P~s~~------~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d 139 (252)
T COG1608 72 FSLTHLAM-----LELNS-IVVDALLDAGVRAVSVVPISFS------TFNGRILYTYLEAIKDALEKGFVPVLYGDVVPD 139 (252)
T ss_pred HHHHHHHH-----HHHHH-HHHHHHHHCCCCCCCCCCCCEE------ECCCCEEECHHHHHHHHHHCCCEEEEECCEEEC
T ss_conf 39999999-----99999-9999998669853222686403------317703220299999998769876233346874
Q ss_pred CCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHH-----CCC--CCHHH
Q ss_conf 56842443068624289999988473455653461440245842123441105679999999884-----031--10137
Q gi|254780873|r 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSS-----LGA--KVMQV 213 (411)
Q Consensus 141 ~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~-----~Ga--kvlhp 213 (411)
.++-.+-+. | |--+.-+|..|+++.+...|||||||+.||..+|+++.++++.-.++.+=+. -|+ |+
T Consensus 140 ~~~g~~IiS-G--DdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl--- 213 (252)
T COG1608 140 DDNGYEIIS-G--DDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKL--- 213 (252)
T ss_pred CCCCEEEEE-C--CHHHHHHHHHHCCCEEEEEECCCCEECCCCCCCCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHH---
T ss_conf 898548985-1--1899999997498779998457823568987486620001443234306867621313399999---
Q ss_pred HHHHHHHHCCCEEEEECCCCCCC-----CCCCCCCCCC
Q ss_conf 88764331385267611237777-----7654354545
Q gi|254780873|r 214 RSVELAMLYKMCLFVRSSFEDHG-----QQEQLGTLIC 246 (411)
Q Consensus 214 ~~~~~~~~~~ipi~i~ntf~~~~-----~~~~~GT~I~ 246 (411)
+++....+++-++++-|-..|.+ +.+..||.|.
T Consensus 214 ~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 214 EALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred HHHHHHHHCCCEEEEECCCCHHHHHHHHCCCCCCEEEC
T ss_conf 99999873586389987877778999965887754846
No 79
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.21 E-value=3e-10 Score=88.87 Aligned_cols=236 Identities=17% Similarity=0.248 Sum_probs=144.7
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-----CHHHHHHHH-HHHHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-----988999999-83129
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-----NARERDVVI-STGEQ 75 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-----~~~~~d~i~-s~GE~ 75 (411)
+..|.|+||.-+. +.+.+++.-+.-...-|-++|||+.+--.++..|.+..-+-...+ ++..++.+- .+++
T Consensus 21 ~fAVIKvGGavi~--e~l~~la~dLafL~~vGl~PVVVHGgGpqI~~~L~~~gIe~~fi~G~RVTd~etl~vv~~vl~~- 97 (421)
T PRK04531 21 RFAVIKVGGAVLR--EDLEALTSSLKFLQEVGLTPVVVHGAGPQLDAELSAAGIEKDTVNGLRVTSPEALAIVRKVFQA- 97 (421)
T ss_pred EEEEEEECHHHHH--HHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHH-
T ss_conf 1899998879999--7999999999999987997999938987787999975999767796305888899999999976-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCC
Q ss_conf 99999999998439986356733--245512133552-000123621003343106805860343335568424430686
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGW--QIPIMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGG 152 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~--~~~i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGG 152 (411)
.+..+ ...|++.|.+|..+.+. ++.++....++. ..+..++++.+...++.+.|||++= +|.+++|.+-.+-
T Consensus 98 ~n~~l-V~~L~~~G~~A~~i~g~~~~a~~~d~~~~G~VG~V~~Vd~~~I~~~L~~g~IPVIap-ig~~~~Gq~lNIN--- 172 (421)
T PRK04531 98 SNLKL-VEALQQNGARATSITGGVFEAEYLDRDTYGLVGEVKAVLLAAVRSSLRAGKIPVIAS-LGETPSGQILNIN--- 172 (421)
T ss_pred HHHHH-HHHHHHCCCCEEECCCCCEECCCCCCCCCCCCCCEEEECHHHHHHHHHCCCEEEECC-CEECCCCCEEEEC---
T ss_conf 52999-999996799757346654350336666676433347786899999997898269815-3158999788405---
Q ss_pred CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH--HCCCCCHHHHHHHHHHH---CCCEEE
Q ss_conf 2428999998847345565346144024584212344110567999999988--40311013788764331---385267
Q gi|254780873|r 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS--SLGAKVMQVRSVELAML---YKMCLF 227 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa--~~Gakvlhp~~~~~~~~---~~ipi~ 227 (411)
+|..|+.+|.+|+|..+...||+.||+..+-++++.--+= -.|+..++=. ..|+|.-= +-++-+.+ ..--+-
T Consensus 173 AD~aA~aLA~aL~a~KlIfLt~~gGi~d~~gk~Is~InL~--~eyd~lm~~~w~~~g~klkl-~~ik~LLd~LP~~SSV~ 249 (421)
T PRK04531 173 ADVAANELVSILQPYKIIFLTGTGGLLDADGNKISSINLS--TEFDQLMQQPSINGGMRLKL-EQIKDLLDRLPLESSVS 249 (421)
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCEECCCCCEEEEEECC--HHHHHHHHCCCCCHHHHHHH-HHHHHHHHCCCCCCEEE
T ss_conf 9999999998628646999716786067899886357544--03554520510356689989-99999985199866078
Q ss_pred E-------ECCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6-------112377777654354545421012
Q gi|254780873|r 228 V-------RSSFEDHGQQEQLGTLICSGEDIM 252 (411)
Q Consensus 228 i-------~ntf~~~~~~~~~GT~I~~~~~~~ 252 (411)
| +..|...+. ||+|..+....
T Consensus 250 It~p~~L~kELFT~~Gs----GTLirrg~~i~ 277 (421)
T PRK04531 250 ITSPSDLAKELFTHKGS----GTLVRRGERIL 277 (421)
T ss_pred EECHHHHHHHHCCCCCC----CEEEECCCEEE
T ss_conf 70899988876267999----60486774765
No 80
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.20 E-value=4.9e-10 Score=87.46 Aligned_cols=179 Identities=13% Similarity=0.158 Sum_probs=126.1
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 66999608584588899999999999999679988999806873048999999986148998899999983129999999
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLM 81 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~ 81 (411)
+..|.|.||+-+.+.+.+...+.-+.-..+-|-.++||+.+--.+...+ ....-..-++.++.. ..-+
T Consensus 36 ~faVIKvGGaVl~d~~~l~~l~~~lsfL~~vGl~pIVVHG~g~~i~~~~-------~~~~~~~~~~v~~~~-----n~~l 103 (271)
T cd04236 36 AFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNM-------SDLELQAARSRLVKD-----CKTL 103 (271)
T ss_pred CEEEEEECHHHEECHHHHHHHHHHHHHHHHCCCEEEEEECCCHHCCCCC-------CCHHHHHHHHHHHHH-----HHHH
T ss_conf 7699998813150588999999999999988994899938970115574-------601225676663799-----9999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCC--C-CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHH
Q ss_conf 999984399863567332455121335--5-2000123621003343106805860343335568424430686242899
Q gi|254780873|r 82 VLALQSLGIQAISLQGWQIPIMTDSLH--G-MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAV 158 (411)
Q Consensus 82 a~~l~~~G~~a~~l~~~~~~i~t~~~~--~-~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~ 158 (411)
..+|++.|.+|+.+.+.+..+...+.. + -..+..++.+.+...++.+.+||++= +|.+.+|.+-..- +|+.|.
T Consensus 104 V~aL~~~G~~A~~i~s~~~~~~~~~~e~~~~vG~~~~v~~~~i~~~i~~g~IPVIap-lG~~~~Gq~~NIN---ADtaA~ 179 (271)
T cd04236 104 VEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCP-IGETSSGRSVSLD---SSEVTT 179 (271)
T ss_pred HHHHHHCCCCEEEEECCCCEEEECCCCCCCCCCCCEEEEHHHHHHHHHCCCCCEECC-CEECCCCCEEEEC---HHHHHH
T ss_conf 999997699624541687337722530137668713860799999997899718825-2378999888775---899999
Q ss_pred HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHH
Q ss_conf 99988473455653461440245842123441105679999999
Q gi|254780873|r 159 AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLE 202 (411)
Q Consensus 159 ~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~e 202 (411)
.+|.+|+|.++.+.|||+||+..| -++|++++-.+..+
T Consensus 180 aiA~aL~a~Kli~LTdv~Gvld~~------~~lI~~i~l~~~~~ 217 (271)
T cd04236 180 AIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLP 217 (271)
T ss_pred HHHHHCCCCEEEEEECCCCEECCC------CCEECEECHHHHHH
T ss_conf 999864876799980787407789------98822016188999
No 81
>PRK12686 carbamate kinase; Reviewed
Probab=99.12 E-value=2.1e-09 Score=83.25 Aligned_cols=220 Identities=20% Similarity=0.281 Sum_probs=124.4
Q ss_pred CCEEEEEECCCCCCC----H----HHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 966999608584588----8----99999999999999679988999806873--0489999999861489988999999
Q gi|254780873|r 1 MARIVMKFGGTSVAN----I----DCIRSAALHVKREVDRGQEVAMVVSAMSG--ETDRLAELCRQVTSIDNARERDVVI 70 (411)
Q Consensus 1 M~~iV~KfGGtSv~~----~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g--~Td~L~~l~~~~~~~~~~~~~d~i~ 70 (411)
+|+||.++||.++.. . +.++..+..|....+.|+++++++. .| +-+.+++..........+.-+|...
T Consensus 3 ~k~iVIAlGGNAl~~~~~t~~~Q~~~~~~~a~~ia~l~~~g~~vVitHG--NGPQVG~l~l~~~~~~~~~~p~~Pld~~~ 80 (313)
T PRK12686 3 KEKIVIALGGNAILQTEASAEAQQTAVREAMQHLVDLIEAGADIVITHG--NGPQVGSLLLQQAESNSNKVPAMPLDTCV 80 (313)
T ss_pred CCEEEEEECCHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHHHCCCCCCCCCCCHHH
T ss_conf 7779998280312899999999999999999999999986997999818--80798999999876436888987640454
Q ss_pred H--HH---HHHHHHHHHHHHHHCCCCCCCC--------CCCCC----------CCCC-----------------CCCCCC
Q ss_conf 8--31---2999999999998439986356--------73324----------5512-----------------133552
Q gi|254780873|r 71 S--TG---EQVSSGLMVLALQSLGIQAISL--------QGWQI----------PIMT-----------------DSLHGM 110 (411)
Q Consensus 71 s--~G---E~~s~~l~a~~l~~~G~~a~~l--------~~~~~----------~i~t-----------------~~~~~~ 110 (411)
+ .| -.+. .-+...|..+|++.... |..|- ++.+ |.-.+.
T Consensus 81 A~sQG~IGy~lq-qal~n~l~~~~~~~~v~tllTqv~VD~~DpAF~~PtKpIGp~y~~eeA~~l~~~~gw~~~~d~g~g~ 159 (313)
T PRK12686 81 AMSQGMIGYWLQ-TALNNELTERNIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGY 159 (313)
T ss_pred HCCCHHHHHHHH-HHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHHCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 302337999999-9999999863899864899988888888867757898606887999999999724986997489844
Q ss_pred CCCC------C-CCCCCHHHHHHHCCEEEEECCCCC--CCCCCEEEECCCCC-----CHHHHHHHHHHCHHHHHHHCCHH
Q ss_conf 0001------2-362100334310680586034333--55684244306862-----42899999884734556534614
Q gi|254780873|r 111 ARIC------R-VDEKKIVTHLKKKQVVVITGFQGL--SHDNSVTTLGRGGS-----DTSAVAIAAAIKADRCDIYTDVC 176 (411)
Q Consensus 111 a~~~------~-~~~~~l~~~l~~~~v~v~~Gf~g~--~~~g~~ttlgRGGS-----D~tA~~ia~~l~A~~~~i~tdV~ 176 (411)
.|+. . .+.+.+..+++.+.++|..|-=|. ..++. .| +|-. |++|+++|..|+||.+.|.||||
T Consensus 160 RRVVpSP~P~~Ive~~~I~~Lv~~g~ivIa~GGGGIPV~~~~~--~~-~GveAVIDKDlaaa~LA~~l~AD~liILTdV~ 236 (313)
T PRK12686 160 RRVVPSPKPKEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDGN--TL-KGVEAVIDKDFASEKLAELIDADLLMILTGVE 236 (313)
T ss_pred EEEECCCCCCCCCCHHHHHHHHHCCCEEEECCCCCCCEEEECC--CE-ECEEEEECCCHHHHHHHHHCCCCEEEEEECCC
T ss_conf 8983699984114699999999689889982798743797589--67-63022425447889999861999899972666
Q ss_pred HHEECCCCCCCCCCEECCCCHHHHHHHHH--------CCCCCHHHHHHHHHHHC-CCEEEEEC
Q ss_conf 40245842123441105679999999884--------03110137887643313-85267611
Q gi|254780873|r 177 GIYTTDPRIEPKAHLMKKISFEEMLEMSS--------LGAKVMQVRSVELAMLY-KMCLFVRS 230 (411)
Q Consensus 177 Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~--------~Gakvlhp~~~~~~~~~-~ipi~i~n 230 (411)
|||..-. -|+.+.|+++|.+|+.++.. +|-||- -+++.+... +=+..|.+
T Consensus 237 ~V~~n~g--~p~q~~l~~it~~e~~~~~~~g~F~~GSM~PKVe--Aai~Fve~g~g~~aiI~~ 295 (313)
T PRK12686 237 NVFINFN--KPNQQKLDDISVAEAKQYIAEGQFAPGSMLPKVE--AAIDFVESGKNKKAIITS 295 (313)
T ss_pred EEEECCC--CCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHH--HHHHHHHCCCCCEEEECC
T ss_conf 0232189--9752235218999999999759998888279999--999999809998699898
No 82
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase; InterPro: IPR005766 delta l-pyrroline-5-carboxylate synthetase contains a glutamate 5-kinase (ProB, 2.7.2.11 from EC) region followed by a gamma-glutamyl phosphate reductase (ProA, 1.2.1.41 from EC) region and catalyses the first and second steps in proline biosynthesis.; GO: 0003824 catalytic activity, 0006561 proline biosynthetic process.
Probab=99.12 E-value=4.3e-10 Score=87.83 Aligned_cols=222 Identities=26% Similarity=0.342 Sum_probs=152.5
Q ss_pred CCEEEEEECCCCCCC--------HHHHHHHHHHHHHHHHCCCCEEEEEE---CCCCHHHHHHHHHH----HHHCCC--CH
Q ss_conf 966999608584588--------89999999999999967998899980---68730489999999----861489--98
Q gi|254780873|r 1 MARIVMKFGGTSVAN--------IDCIRSAALHVKREVDRGQEVAMVVS---AMSGETDRLAELCR----QVTSID--NA 63 (411)
Q Consensus 1 M~~iV~KfGGtSv~~--------~~~i~~v~~~i~~~~~~g~~~ivVvS---A~~g~Td~L~~l~~----~~~~~~--~~ 63 (411)
.||||.|.| |.|-+ --|+-.++++++....+|.+++.|.| |+|+--=+...|.+ ++..-. ..
T Consensus 7 ~KRiVVK~G-~AVVTr~d~~GLALGRL~si~EQl~~L~~~G~E~~LVtSGAV~~G~QRLR~~~L~~~S~~~~~~~~qnql 85 (738)
T TIGR01092 7 VKRIVVKVG-TAVVTRGDGRGLALGRLGSIVEQLSELNSDGYEVILVTSGAVALGRQRLRYRKLVNSSFADLQKPQQNQL 85 (738)
T ss_pred CCEEEEEEC-CEEEECCCCCEEHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHCCCHHHHHHHHHHHHHHHHHCCHHHHH
T ss_conf 547899825-4578778984014567899999999860289289998144123040468999999999998624202334
Q ss_pred HHHHH-------HHHHHHHHHHHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEE
Q ss_conf 89999-------9983129999999999---9843998635673324551213355200012362100334310680586
Q gi|254780873|r 64 RERDV-------VISTGEQVSSGLMVLA---LQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVI 133 (411)
Q Consensus 64 ~~~d~-------i~s~GE~~s~~l~a~~---l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~ 133 (411)
+|+.. -.+.|. +.|||.| +.+.. +.+.|+ +.||.+|-+......-.+.+.+.|.-..|||+
T Consensus 86 ke~ai~~L~~~ACAa~GQ---sgLMAlYe~~F~Q~~-----~~aAQ~-LVT~~dF~D~~~R~~L~~T~~~lL~~~vvPv~ 156 (738)
T TIGR01092 86 KEMAIVELDGKACAAVGQ---SGLMALYETMFTQLD-----ITAAQL-LVTDLDFRDEQFRRQLNETVKELLRMKVVPVL 156 (738)
T ss_pred HHHHHHHCCCCHHHHCCH---HHHHHHHHHHHHHHH-----HHHHHH-HHCCCCCCCHHHHHHHHHHHHHHHCCEEEEEE
T ss_conf 442121013311001041---368999999865898-----888887-63155566867777799999998523033565
Q ss_pred ECCCCCCCCCCEEEECCCC-------------CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEE--------
Q ss_conf 0343335568424430686-------------2428999998847345565346144024584212344110--------
Q gi|254780873|r 134 TGFQGLSHDNSVTTLGRGG-------------SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLM-------- 192 (411)
Q Consensus 134 ~Gf~g~~~~g~~ttlgRGG-------------SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i-------- 192 (411)
|.|+-+.|=.--+ .|--||++|..|+||.+.+..||+|+|+.-|-- +++|+|
T Consensus 157 ------N~NDAv~~~~~P~~D~~Ginvis~~DNDSLAA~LalElK~DLLIlLSDVeGLy~~PPs~-~~~KLI~~f~~~~~ 229 (738)
T TIGR01092 157 ------NENDAVSTRKAPYSDSQGINVISFWDNDSLAALLALELKADLLILLSDVEGLYDGPPSD-DDSKLIDTFVKEKH 229 (738)
T ss_pred ------ECCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCC-CCCCEEEEECCCCC
T ss_conf ------17875477547754346605899833647999999877440402010302234851137-87626887306754
Q ss_pred -CCCCHHHHHHHHHCC--CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCC
Q ss_conf -567999999988403--110137887643313852676112377777654354545
Q gi|254780873|r 193 -KKISFEEMLEMSSLG--AKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 (411)
Q Consensus 193 -~~lsy~Ea~eLa~~G--akvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~ 246 (411)
+++||-+--.|-.-| ||| +|.-.|...|+|+.|-|-.. ++..|-+|+
T Consensus 230 Q~~iTFG~KSrlG~GGM~AKV---KAA~~A~~gG~~ViIa~G~~----~~~sGhvI~ 279 (738)
T TIGR01092 230 QDEITFGEKSRLGRGGMTAKV---KAAVYAAYGGVPVIIASGTA----AKNSGHVIT 279 (738)
T ss_pred CCCEECCCCCCCCCCCCHHHH---HHHHHHHHCCEEEEECCCCC----CCCCCCEEE
T ss_conf 560103652223688502789---99999974891699816856----533653322
No 83
>PRK09436 thrA bifunctional aspartokinase I/homeserine dehydrogenase I; Provisional
Probab=99.07 E-value=9.8e-10 Score=85.44 Aligned_cols=74 Identities=30% Similarity=0.433 Sum_probs=54.3
Q ss_pred CCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCCC
Q ss_conf 615897489169999667866785579999999986798299997--07848999970889999999999870977
Q gi|254780873|r 336 YDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLD 409 (411)
Q Consensus 336 ~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~ld 409 (411)
+..|...+++++|++-|.||...||+++|+|++|++++|||.||+ +||.+|||.|+.+|.++|.+.|.++|.++
T Consensus 306 VkgIs~~~~iali~i~g~gm~g~~G~a~riF~~L~~~~InV~lIsQ~sSE~sIs~~v~~~d~~~a~~~L~~ef~~E 381 (817)
T PRK09436 306 VKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKARRALEEEFALE 381 (817)
T ss_pred EEEEEECCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 4899942877999996388788510899999999986997799852687760567754889999999999999988
No 84
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.05 E-value=1.8e-08 Score=76.88 Aligned_cols=239 Identities=20% Similarity=0.234 Sum_probs=132.8
Q ss_pred CC-EEEEEECCCCCCC------H----HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC--CCHHHHH
Q ss_conf 96-6999608584588------8----99999999999999679988999806873048999999986148--9988999
Q gi|254780873|r 1 MA-RIVMKFGGTSVAN------I----DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI--DNARERD 67 (411)
Q Consensus 1 M~-~iV~KfGGtSv~~------~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~--~~~~~~d 67 (411)
|+ +||.-+||.++.. . +.++..+..|....++|++++++++-==-+-+.|+.. ++... ..+.-+|
T Consensus 1 M~k~iVvALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vVitHGNGPQVG~i~l~~--~~~~~~~~p~~PLd 78 (313)
T PRK12454 1 MKKRIVIALGGNALQQRGEKGTAENMMKNVRRTAEQIARLIEEGYEVVITHGNGPQVGNLLLQM--DAAKDVGIPPFPLD 78 (313)
T ss_pred CCCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH--HHHCCCCCCCCCCH
T ss_conf 9955999808365089999999999999999999999999987997999818813999999999--87324689986603
Q ss_pred HHHHHHHHHHHHHH----HHHHHHCCCCCCCC--------CCC----CCC-----------------------CCCCCCC
Q ss_conf 99983129999999----99998439986356--------733----245-----------------------5121335
Q gi|254780873|r 68 VVISTGEQVSSGLM----VLALQSLGIQAISL--------QGW----QIP-----------------------IMTDSLH 108 (411)
Q Consensus 68 ~i~s~GE~~s~~l~----a~~l~~~G~~a~~l--------~~~----~~~-----------------------i~t~~~~ 108 (411)
...+.-+=+--+++ ...|..+|++-... |.. +.| +.-|...
T Consensus 79 ~~~A~sQG~IGy~lqqal~n~L~~~~~~~~v~tlvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~eD~gr 158 (313)
T PRK12454 79 VAGAMTQGWIGYMIQQALRNVLPKRGIERQVATIVTQTIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGR 158 (313)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCHHHCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCC
T ss_conf 55230134899999999999998539998469999899987876322089886268879999999998559789764898
Q ss_pred CCCCC------CC-CCCCCHHHHHHHCCEEEEECCCCC---CCCCCEEEECCCC---CCHHHHHHHHHHCHHHHHHHCCH
Q ss_conf 52000------12-362100334310680586034333---5568424430686---24289999988473455653461
Q gi|254780873|r 109 GMARI------CR-VDEKKIVTHLKKKQVVVITGFQGL---SHDNSVTTLGRGG---SDTSAVAIAAAIKADRCDIYTDV 175 (411)
Q Consensus 109 ~~a~~------~~-~~~~~l~~~l~~~~v~v~~Gf~g~---~~~g~~ttlgRGG---SD~tA~~ia~~l~A~~~~i~tdV 175 (411)
+..++ .+ .+.+.+..+++.+.++|..|-=|. ..+|.. -|-.. -|++|+++|..++||.+.|.|||
T Consensus 159 G~RRVVpSP~P~~IvE~~~I~~Lv~~g~iVIa~GGGGIPVv~~~g~l--~GveAVIDKD~aaa~LA~~l~Ad~liILTdV 236 (313)
T PRK12454 159 GYRRVVPSPDPLGIVEIETIKMLVENGVIVIAAGGGGIPVIEEDGEL--KGVEAVIDKDLASELLAEELNADIFIILTDV 236 (313)
T ss_pred CEEEECCCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCCCE--ECCCEEECCCHHHHHHHHHHCCCEEEEEECC
T ss_conf 55886179999427528999999978988999489856668559827--5652044451889999997099989996166
Q ss_pred HHHEECCCCC-CCCCCEECCCCHHHHHHHHH---CCCCCHHH---HHHHHHHHCCCEEEEECCCCCC-CCCCCCCCCCC
Q ss_conf 4402458421-23441105679999999884---03110137---8876433138526761123777-77654354545
Q gi|254780873|r 176 CGIYTTDPRI-EPKAHLMKKISFEEMLEMSS---LGAKVMQV---RSVELAMLYKMCLFVRSSFEDH-GQQEQLGTLIC 246 (411)
Q Consensus 176 ~Gi~taDPr~-v~~a~~i~~lsy~Ea~eLa~---~Gakvlhp---~~~~~~~~~~ipi~i~ntf~~~-~~~~~~GT~I~ 246 (411)
|+||- ++ -|+.+.|+++|.+||.++.. |.+--+-| -|+..+...+-+..|.|.-+-. .-....||+|.
T Consensus 237 d~V~~---n~g~p~q~~l~~it~~e~~~~~~eg~F~~GsM~PKV~Aai~Fve~gg~~aiItsl~~~~~al~g~~GT~Iv 312 (313)
T PRK12454 237 EKVYL---NYGKPDQKALDKVTVDEAKKYYEEGHFPAGSMGPKILAAIRFVENGGRRAVIGDLEKAVEALEGKTGTRII 312 (313)
T ss_pred CHHEE---CCCCCCHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECCHHHHHHHHCCCCCCEEC
T ss_conf 50000---38996412240388999999987599888882699999999999479769999889999996799998865
No 85
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.95 E-value=3.8e-10 Score=88.17 Aligned_cols=61 Identities=57% Similarity=0.897 Sum_probs=55.2
Q ss_pred CHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 00012775000484100014554128501112344322223331012123024776688789
Q gi|254780873|r 267 AQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLS 328 (411)
Q Consensus 267 ~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~ 328 (411)
++|++.++++.||.+++||+.|++++||||||.|+.++++ ..+++||++++|++++..+|+
T Consensus 1 akitv~~vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~~~~-~~~isFTv~~~dl~~a~~~L~ 61 (61)
T cd04891 1 AQVTIKGVPDKPGVAAKIFSALAEAGINVDMIVQSVSRGG-TTDISFTVPKSDLEKALAILE 61 (61)
T ss_pred CEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCC-CCEEEEEECHHHHHHHHHHHC
T ss_conf 9487748999975799999999985981799986588899-521899824989999999849
No 86
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=98.89 E-value=2.2e-09 Score=83.04 Aligned_cols=58 Identities=45% Similarity=0.716 Sum_probs=54.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC--CCEEEEEECHHHHHHHHHHHH
Q ss_conf 6999966786678557999999998679829999707--848999970889999999999
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTS--EIKISVLIDSAYTELAVRSLH 403 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issS--e~~IS~VV~~~d~~~Av~~LH 403 (411)
++|+++|.+|+..+|+++|+|++|++++|++.||+++ +.+|||+|+++|.++|++.||
T Consensus 1 ~~isi~g~~~~~~~~~~~~if~~L~~~~i~v~~I~q~~s~~~isf~v~~~~~~~a~~~L~ 60 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCCCEEEEEEEHHHHHHHHHHHC
T ss_conf 979898888378837999999999984999889402677433999984899999999749
No 87
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=98.87 E-value=1e-07 Score=71.87 Aligned_cols=219 Identities=21% Similarity=0.271 Sum_probs=122.8
Q ss_pred EEEEEECCCCCCC------H----HHHHHHHHHHHHHHHCCCCEEEEEECCCC--HHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 6999608584588------8----99999999999999679988999806873--0489999999861489988999999
Q gi|254780873|r 3 RIVMKFGGTSVAN------I----DCIRSAALHVKREVDRGQEVAMVVSAMSG--ETDRLAELCRQVTSIDNARERDVVI 70 (411)
Q Consensus 3 ~iV~KfGGtSv~~------~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g--~Td~L~~l~~~~~~~~~~~~~d~i~ 70 (411)
+||...||.++.. . +.++..+..|....+.|+++++++. +| +-+.|+..... .....+.-+|...
T Consensus 1 riViALGGNAl~~~g~~~t~~~Q~~~v~~~a~~ia~l~~~G~~vVitHG--NGPQVG~ll~~~~~~-~~~~p~~Pld~~~ 77 (308)
T cd04235 1 RIVVALGGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHG--NGPQVGNLLLQNEAA-AEKVPAYPLDVCG 77 (308)
T ss_pred CEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECC--CCHHHHHHHHHHHHH-CCCCCCCCCHHHH
T ss_conf 9899957365089999999999999999999999999986997999869--951899999988862-4678998620464
Q ss_pred --HH---HHHHHHHHHHHHHHHCCCCCCCC--------CCC----CCC-----------------------CCCCCCCCC
Q ss_conf --83---12999999999998439986356--------733----245-----------------------512133552
Q gi|254780873|r 71 --ST---GEQVSSGLMVLALQSLGIQAISL--------QGW----QIP-----------------------IMTDSLHGM 110 (411)
Q Consensus 71 --s~---GE~~s~~l~a~~l~~~G~~a~~l--------~~~----~~~-----------------------i~t~~~~~~ 110 (411)
|. |-.+.- -+...|..+|++.... |.. +.| +.-|...+.
T Consensus 78 A~sQG~IGy~lqq-al~n~l~~~~~~~~v~t~vTqv~Vd~~DpAF~~PtKpIGpfy~~eeA~~l~~~~g~~~~eD~grg~ 156 (308)
T cd04235 78 AMSQGMIGYMLQQ-ALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGY 156 (308)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 6530599999999-999999854899845999989998899832238888657775999999999845978974288640
Q ss_pred CCCC------C-CCCCCHHHHHHHCCEEEEECCCCC--CCCCCEEEECCCC-----CCHHHHHHHHHHCHHHHHHHCCHH
Q ss_conf 0001------2-362100334310680586034333--5568424430686-----242899999884734556534614
Q gi|254780873|r 111 ARIC------R-VDEKKIVTHLKKKQVVVITGFQGL--SHDNSVTTLGRGG-----SDTSAVAIAAAIKADRCDIYTDVC 176 (411)
Q Consensus 111 a~~~------~-~~~~~l~~~l~~~~v~v~~Gf~g~--~~~g~~ttlgRGG-----SD~tA~~ia~~l~A~~~~i~tdV~ 176 (411)
.++. + .+.+.+..+++.+.+||+.|-=|. ..++. .. +|- -|++|+++|..|+||.+.|.||||
T Consensus 157 RRVVpSP~P~~IvE~~~I~~L~~~g~ivIa~GGGGIPVv~~~~-~~--~GveAVIDKD~aaa~LA~~l~Ad~liiLTdV~ 233 (308)
T cd04235 157 RRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGG-GL--KGVEAVIDKDLASALLAEEINADLLVILTDVD 233 (308)
T ss_pred EEEECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEECCCC-CE--ECCEEEECCHHHHHHHHHHCCCCEEEEEECCH
T ss_conf 5786699981454699999999779889982898654682499-54--43110213438889999863898899971641
Q ss_pred HHEECCCCCCCCCCEECCCCHHHHHHHHH---CCCCCHHH---HHHHHHHHCCCEEEEEC
Q ss_conf 40245842123441105679999999884---03110137---88764331385267611
Q gi|254780873|r 177 GIYTTDPRIEPKAHLMKKISFEEMLEMSS---LGAKVMQV---RSVELAMLYKMCLFVRS 230 (411)
Q Consensus 177 Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~---~Gakvlhp---~~~~~~~~~~ipi~i~n 230 (411)
|||-.=. -|+.+.|+++|.+|+.++.. |..--+-| -|++.+...+=...|.+
T Consensus 234 ~V~~n~g--~p~q~~L~~it~~e~~~~~~~g~F~~GSM~PKv~Aai~fv~~gg~~a~Its 291 (308)
T cd04235 234 NVYINFG--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS 291 (308)
T ss_pred HHHHCCC--CCCCHHHCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEECC
T ss_conf 6876289--986002214889999999976998889836999999999994898799998
No 88
>PRK09411 carbamate kinase; Reviewed
Probab=98.84 E-value=1.3e-07 Score=71.12 Aligned_cols=219 Identities=18% Similarity=0.205 Sum_probs=124.4
Q ss_pred CCEEEEEECCCCCC------CH----HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 96699960858458------88----999999999999996799889998068730489999999861489988999999
Q gi|254780873|r 1 MARIVMKFGGTSVA------NI----DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVI 70 (411)
Q Consensus 1 M~~iV~KfGGtSv~------~~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~ 70 (411)
||+||.-.||.++. +. +.++..++.+... .+++++++.++-==-+-+.++. +.......+.-+|...
T Consensus 1 Mk~iViALGGNAl~~~g~~~t~e~Q~~~v~~aa~~ia~l-~~~~~vVITHGNGPQVG~l~lq--~~a~~~~p~~PLd~~~ 77 (297)
T PRK09411 1 MKTLVVALGGNALLQRGEALTAENQYRNIASAVPALARL-ARSYRLAIVHGNGPQVGLLALQ--NLAWKEVEPYPLDVLV 77 (297)
T ss_pred CCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHH-HHCCCEEEEECCCHHHHHHHHH--HHHHCCCCCCCCCHHH
T ss_conf 975999768142179999989999999999999999999-8089399984781298999999--8863269998830342
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCC--------CCCC----CCC------CCCC----------------CCCCCCCCC--
Q ss_conf 831299999999999843998635--------6733----245------5121----------------335520001--
Q gi|254780873|r 71 STGEQVSSGLMVLALQSLGIQAIS--------LQGW----QIP------IMTD----------------SLHGMARIC-- 114 (411)
Q Consensus 71 s~GE~~s~~l~a~~l~~~G~~a~~--------l~~~----~~~------i~t~----------------~~~~~a~~~-- 114 (411)
+.-+=+--+++...|+.++..... +|.. +.| +.+. +-.+..++.
T Consensus 78 A~sQG~IGY~l~q~L~~~~~~~~V~tvlTQv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edgrg~RRVVpS 157 (297)
T PRK09411 78 AESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVAS 157 (297)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCCCEEEEEECC
T ss_conf 42206999999999984378998579988899889981213899851788799999999975596895269802687379
Q ss_pred ----C-CCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCC-----CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCC
Q ss_conf ----2-3621003343106805860343335568424430686-----24289999988473455653461440245842
Q gi|254780873|r 115 ----R-VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGG-----SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPR 184 (411)
Q Consensus 115 ----~-~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGG-----SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr 184 (411)
. .+.+.+..+++.+.++|.+|-=|.--.+.. +|= -|++++++|..++||.+.|.||||+||..-=
T Consensus 158 P~P~~IvE~~~Ik~Lv~~g~iVIa~GGGGIPV~~~~----~GVeAVIDKD~asalLA~~l~AD~liILTdVd~V~~n~g- 232 (297)
T PRK09411 158 PQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDG----AGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG- 232 (297)
T ss_pred CCCCCEECHHHHHHHHHCCCEEEECCCCCCCCCCCC----CCCEEEECCCHHHHHHHHHHCCCEEEEEECCCCHHHCCC-
T ss_conf 998416369999999986987996598870558985----352136634177899999729998999746650101389-
Q ss_pred CCCCCCEECCCCHHHHHHHHH----CCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 123441105679999999884----0311013788764331385267611
Q gi|254780873|r 185 IEPKAHLMKKISFEEMLEMSS----LGAKVMQVRSVELAMLYKMCLFVRS 230 (411)
Q Consensus 185 ~v~~a~~i~~lsy~Ea~eLa~----~Gakvlhp~~~~~~~~~~ipi~i~n 230 (411)
-|+.+.+++++.+|+.+... +|-||- -+++.+...+=...|.|
T Consensus 233 -~p~q~~L~~~t~~el~~~~~~~GSM~PKVe--Aai~Fv~~~G~~aiIts 279 (297)
T PRK09411 233 -TPQQRAIRHATPDELAPFAKADGAMGPKVT--AVSGYVRSRGKPAWIGA 279 (297)
T ss_pred -CCCHHHHHCCCHHHHHHHCCCCCCCHHHHH--HHHHHHHHCCCEEEECC
T ss_conf -924335621899999832679898648999--99999995798699897
No 89
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=98.83 E-value=4.7e-09 Score=80.84 Aligned_cols=73 Identities=37% Similarity=0.432 Sum_probs=60.1
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH----HCCCCEE
Q ss_conf 2000127--750004841000145541285011123443222233310121230247766887898886----0596158
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE----NIGYDVI 339 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~----~~~~~~I 339 (411)
++++++. +|.+.||+++|+|+.|++++|||.||+|++||. +|+|.++++|.+++..+|++.+. ...+.++
T Consensus 1 valv~vvG~gm~~~~GvaariF~~La~~~INI~mIsQ~sSE~----sIs~vV~~~d~~~Av~aL~~~F~le~~~~~i~~i 76 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEH----SISFVVDESDADKALEALEEEFALEIKAGLIKPI 76 (80)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCE
T ss_conf 979999788968997489999999998799789997378765----6999981899999999999999989972988844
Q ss_pred EEE
Q ss_conf 974
Q gi|254780873|r 340 QHE 342 (411)
Q Consensus 340 ~~~ 342 (411)
.++
T Consensus 77 ~v~ 79 (80)
T cd04921 77 EVE 79 (80)
T ss_pred EEE
T ss_conf 764
No 90
>PRK06291 aspartate kinase; Provisional
Probab=98.75 E-value=1.6e-07 Score=70.46 Aligned_cols=113 Identities=28% Similarity=0.317 Sum_probs=86.4
Q ss_pred CCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCC
Q ss_conf 10001455412850111234432222333101212302477668878988860596158974891699996678667855
Q gi|254780873|r 281 SASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 (411)
Q Consensus 281 ~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~G 360 (411)
-.+-+..+.+++|++..-.+..+++.. +-|+ .+... ....+..|...+++++|++-|.+|...+|
T Consensus 272 Hp~ti~p~~~~~IPi~I~nt~~P~~~G-T~I~---~~~~~-----------~~~~Vk~Ia~~~~i~~i~i~~~~m~~~~g 336 (466)
T PRK06291 272 HPRTIEPAMEKGIPVRVKNTFNPEFPG-TLIT---SESEQ-----------SNGVVKAVTLIKNVALINISGAGMVGVPG 336 (466)
T ss_pred CHHHHHHHHHCCCCEEEEECCCCCCCC-EEEE---CCCCC-----------CCCCEEEEECCCCEEEEEEECCCCCCCHH
T ss_conf 677899999809938998268989997-2896---47766-----------75522101035773799971576553000
Q ss_pred HHHHHHHHHHHCCCEEEEEE--ECCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 79999999986798299997--0784899997088999999999987097
Q gi|254780873|r 361 VASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 361 iaakif~aL~~~~InI~~is--sSe~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+++|+|.+|++++|++.|++ +|+.+|||.|++.+.+++++.|+++|.-
T Consensus 337 ~~~~if~~l~~~~i~v~~i~q~ss~~~is~~v~~~~~~~~~~~l~~~~~~ 386 (466)
T PRK06291 337 VAARIFSALAREGVNVIMISQGSSESNISLVIDEADVEKALKALRREFNR 386 (466)
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 68999899987398089998048876058996188899999999998764
No 91
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.71 E-value=7.1e-09 Score=79.64 Aligned_cols=62 Identities=13% Similarity=0.237 Sum_probs=55.6
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 69999667866785579999999986798299997078489999708899999999998709
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYG 407 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ 407 (411)
|.||+||.+||+..+.++.+|.++++.+|.....++|+.|++||||+++++++++.||..+.
T Consensus 1 AaVSLVGr~iR~~L~~l~~~f~~f~~~~V~liSqaAnDlNlTfViDe~~a~~l~~~LH~~li 62 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLI 62 (63)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCEEEEECHHHHHHHHHHHHHHHC
T ss_conf 90306544489989987189999713755522110344555999735656999999999961
No 92
>PRK12354 carbamate kinase; Reviewed
Probab=98.69 E-value=7.6e-07 Score=66.00 Aligned_cols=236 Identities=22% Similarity=0.226 Sum_probs=126.7
Q ss_pred CCEEEEEECCCCCC------CH----HHHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 96699960858458------88----9999999999999967998899980687-3048999999986148998899999
Q gi|254780873|r 1 MARIVMKFGGTSVA------NI----DCIRSAALHVKREVDRGQEVAMVVSAMS-GETDRLAELCRQVTSIDNARERDVV 69 (411)
Q Consensus 1 M~~iV~KfGGtSv~------~~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~-g~Td~L~~l~~~~~~~~~~~~~d~i 69 (411)
|++ |.-+||.++. +. +.++..+..|.... +|++++++++- | -+-. +-+..+......+.-+|..
T Consensus 1 mri-ViALGGNAll~~g~~~t~~~Q~~~v~~aa~~ia~l~-~g~~vvitHGN-GPQVG~--i~l~~~~~~~~p~~PLd~~ 75 (302)
T PRK12354 1 MRI-VIALGGNALLRRGEPMTAENQRANIRIAAEQIAKIA-PGNEVVIVHGN-GPQVGL--LALQNAAYKAVPPYPLDVL 75 (302)
T ss_pred CEE-EEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH-CCCEEEEEECC-CHHHHH--HHHHHHHCCCCCCCCHHHH
T ss_conf 949-998273531799999999999999999999999997-59959998278-168899--9998774168999882676
Q ss_pred HHHHHHHHHHHHHHHHHH-CC--CCCCC------CCCC----CCC------CCC-----------------CCCCCCCCC
Q ss_conf 983129999999999984-39--98635------6733----245------512-----------------133552000
Q gi|254780873|r 70 ISTGEQVSSGLMVLALQS-LG--IQAIS------LQGW----QIP------IMT-----------------DSLHGMARI 113 (411)
Q Consensus 70 ~s~GE~~s~~l~a~~l~~-~G--~~a~~------l~~~----~~~------i~t-----------------~~~~~~a~~ 113 (411)
.+.-+=+--+++...|+. .. -+... +|.. +.| +.+ |+ .+..|+
T Consensus 76 ~A~SQG~IGY~lqqaL~n~l~~~k~v~tvvTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~gw~~~edg-rG~RRV 154 (302)
T PRK12354 76 GAETEGMIGYMLEQELGNLLPFERPVATLLTQVEVDANDPAFANPTKPIGPVYSEEEAERLAAEKGWVIKPDG-DKFRRV 154 (302)
T ss_pred HHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEECCC-CEEEEE
T ss_conf 4521169999999999987556998699986899889984534899860788699999999997498871158-803686
Q ss_pred C------C-CCCCCHHHHHHHCCEEEEECCCCC----CCCCCEEEECCC---CCCHHHHHHHHHHCHHHHHHHCCHHHHE
Q ss_conf 1------2-362100334310680586034333----556842443068---6242899999884734556534614402
Q gi|254780873|r 114 C------R-VDEKKIVTHLKKKQVVVITGFQGL----SHDNSVTTLGRG---GSDTSAVAIAAAIKADRCDIYTDVCGIY 179 (411)
Q Consensus 114 ~------~-~~~~~l~~~l~~~~v~v~~Gf~g~----~~~g~~ttlgRG---GSD~tA~~ia~~l~A~~~~i~tdV~Gi~ 179 (411)
. . .+.+.+..+++.+.++|.+|-=|. +.+|.+ -|-- --|++|+++|..++||.+.|.||||+||
T Consensus 155 VpSP~P~~IvE~~~Ik~L~~~g~iVIa~GGGGIPVv~~~~g~l--~GveAVIDKD~aaa~LA~~l~AD~liILT~Vd~V~ 232 (302)
T PRK12354 155 VPSPKPKRIVEIRAIKWLLEKGHIVICAGGGGIPVVYDADGKL--HGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVY 232 (302)
T ss_pred ECCCCCCEEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCE--ECCEEEECCCHHHHHHHHHHCCCEEEEEECCCHHH
T ss_conf 3799985556499999999789989984788601398689968--65045663407889999870999899985654220
Q ss_pred ECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHH---HHHHHHHCCCEEEEECCCCCC-CCCCCCCCCCCC
Q ss_conf 45842123441105679999999884031101378---876433138526761123777-776543545454
Q gi|254780873|r 180 TTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVR---SVELAMLYKMCLFVRSSFEDH-GQQEQLGTLICS 247 (411)
Q Consensus 180 taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~---~~~~~~~~~ipi~i~ntf~~~-~~~~~~GT~I~~ 247 (411)
-.-= -|+.+.++++|.+|+.++ .|.+-=+-|+ |++.+...+=...|.+.-+-. .-....||+|++
T Consensus 233 ~n~g--kp~q~~l~~~t~~el~~~-~F~~GSM~PKVeAai~Fv~~~g~~aiItsl~~~~~al~G~~GT~I~p 301 (302)
T PRK12354 233 LDWG--KPTQRPLAQATPDELREL-GFAAGSMGPKVEAACEFVEATGGIAGIGSLADILAILAGEAGTRISP 301 (302)
T ss_pred HCCC--CCCHHHHHCCCHHHHHHC-CCCCCCCHHHHHHHHHHHHCCCCEEEECCHHHHHHHHCCCCCCEECC
T ss_conf 2489--966002314889999737-99988836999999999982798799897999999967999968688
No 93
>PRK12352 putative carbamate kinase; Reviewed
Probab=98.68 E-value=3e-06 Score=62.01 Aligned_cols=239 Identities=16% Similarity=0.190 Sum_probs=130.3
Q ss_pred CC-EEEEEECCCCCC------CH----HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHH--HHHHHHCCCCHHHHH
Q ss_conf 96-699960858458------88----999999999999996799889998068730489999--999861489988999
Q gi|254780873|r 1 MA-RIVMKFGGTSVA------NI----DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAE--LCRQVTSIDNARERD 67 (411)
Q Consensus 1 M~-~iV~KfGGtSv~------~~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~--l~~~~~~~~~~~~~d 67 (411)
|| ++|.-+||.++. +. +.++..+..+....+.|+++++++.-==-+-+.|+. ++.+.... .+.-+|
T Consensus 1 M~k~iViALGGNAll~~g~~~t~~~Q~~~v~~~a~~ia~li~~g~~vvitHGNGPQVG~l~lq~e~a~~~~~~-p~~PLd 79 (316)
T PRK12352 1 MKELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGL-PLTPLA 79 (316)
T ss_pred CCCEEEEECCHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCC-CCCCHH
T ss_conf 9966999767343289999999999999999999999999976996999817816988999999875336789-987545
Q ss_pred HHHHHHHHHHHHHHHH----HHHHCCCCCC-C------CCCC----CCC------CCC------------------CCCC
Q ss_conf 9998312999999999----9984399863-5------6733----245------512------------------1335
Q gi|254780873|r 68 VVISTGEQVSSGLMVL----ALQSLGIQAI-S------LQGW----QIP------IMT------------------DSLH 108 (411)
Q Consensus 68 ~i~s~GE~~s~~l~a~----~l~~~G~~a~-~------l~~~----~~~------i~t------------------~~~~ 108 (411)
...+.-+=+--+++.. .|..+|-+.. . +|.. +.| +.+ |.-.
T Consensus 80 ~~~A~sQG~IGY~lqqal~n~l~~r~~~~vvtvlTqv~VD~~DpAF~~PtKpIGpfy~~eeA~~l~~~~~gw~~~eD~gr 159 (316)
T PRK12352 80 NCVADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGR 159 (316)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCC
T ss_conf 54121220899999999999997638988689987899898980100799874788699999999986689879974899
Q ss_pred CCCCCC------C-CCCCCHHHHHHHCCEEEEECCCCC----CCCCCEEEECCC---CCCHHHHHHHHHHCHHHHHHHCC
Q ss_conf 520001------2-362100334310680586034333----556842443068---62428999998847345565346
Q gi|254780873|r 109 GMARIC------R-VDEKKIVTHLKKKQVVVITGFQGL----SHDNSVTTLGRG---GSDTSAVAIAAAIKADRCDIYTD 174 (411)
Q Consensus 109 ~~a~~~------~-~~~~~l~~~l~~~~v~v~~Gf~g~----~~~g~~ttlgRG---GSD~tA~~ia~~l~A~~~~i~td 174 (411)
+..++. + ++.+.+..+++.+.++|.+|-=|. +.+|.+ -|-- --|++++++|..++||.+.|.||
T Consensus 160 G~RRVVpSP~P~~IvE~~~Ik~L~~~g~iVIa~GGGGIPV~~~~~g~l--~GVeAVIDKD~asa~LA~~l~AD~liILTd 237 (316)
T PRK12352 160 GYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDY--QSVDAVIDKDLSTALLAREIHADILVITTG 237 (316)
T ss_pred CEEEEECCCCCCCEECHHHHHHHHHCCCEEEEECCCCCCEEECCCCCE--ECCEEEECCCHHHHHHHHHHCCCEEEEEEC
T ss_conf 637874799985040599999999789889984798753376289856--543146635278899999709998999735
Q ss_pred HHHHEECCCCCCCCCCEECCCCHHHHHHHHH---C-----CCCCHHHHHHHHHHHCCCEEEEECCCCCC-CCCCCCCCCC
Q ss_conf 1440245842123441105679999999884---0-----31101378876433138526761123777-7765435454
Q gi|254780873|r 175 VCGIYTTDPRIEPKAHLMKKISFEEMLEMSS---L-----GAKVMQVRSVELAMLYKMCLFVRSSFEDH-GQQEQLGTLI 245 (411)
Q Consensus 175 V~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~---~-----Gakvlhp~~~~~~~~~~ipi~i~ntf~~~-~~~~~~GT~I 245 (411)
||+||-.-- -|+.+.+++++.+|+.++.. | |-||- -+++.+...+-+..|.+.-+-. .-....||.|
T Consensus 238 Vd~V~~n~g--kp~q~~L~~vt~~e~~~y~~eg~F~~GSM~PKV~--Aai~Fve~gg~~aiItsl~~~~~al~G~aGT~I 313 (316)
T PRK12352 238 VEKVCIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKII--ASLTFLEQGGKEVIITTPECLPAALRGETGTHI 313 (316)
T ss_pred CCEEEEECC--CCCHHHHHHCCHHHHHHHHHCCCCCCCCCHHHHH--HHHHHHHHCCCEEEECCHHHHHHHHCCCCCCEE
T ss_conf 660354089--9651135308999999998769998888379999--999999947986998978999999679998679
Q ss_pred C
Q ss_conf 5
Q gi|254780873|r 246 C 246 (411)
Q Consensus 246 ~ 246 (411)
.
T Consensus 314 v 314 (316)
T PRK12352 314 I 314 (316)
T ss_pred E
T ss_conf 4
No 94
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.61 E-value=2.9e-08 Score=75.58 Aligned_cols=63 Identities=29% Similarity=0.415 Sum_probs=55.8
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 2000127--750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
+++|++. +|.+.||+.+|+|+.|++++|||.||+|++||. +|+|.++++|.+++.+.|++.++
T Consensus 1 ia~isvvG~gM~~~~GvaariF~aLa~~~INI~mIsQgsSE~----sIs~~V~~~d~~~Av~alh~eF~ 65 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEY----NISFVVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECHHHHHHHHHHHHHHHC
T ss_conf 949999788847896779999999997799789997377630----79999948999999999998728
No 95
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.60 E-value=3.4e-08 Score=75.10 Aligned_cols=61 Identities=31% Similarity=0.352 Sum_probs=54.8
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 000127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++|++. +|.+.||+.+|+|+.|++++|||.||+|++||. +|+|.++++|.+++.+.|++..
T Consensus 2 AlisivG~gM~~~~GvaariF~~L~~~~INI~mIsQgsSE~----~Is~~V~~~d~~~Av~alh~~F 64 (66)
T cd04916 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEI----SIMIGVHNEDADKAVKAIYEEF 64 (66)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEECHHHHHHHHHHHHHHH
T ss_conf 19999787816793589999999998799889986277611----5999981899999999999986
No 96
>TIGR00657 asp_kinases aspartate kinase; InterPro: IPR001341 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see . Aspartate kinase (2.7.2.4 from EC) (AK) catalyzes the first reaction in the aspartate pathway; the phosphorylation of aspartate. The product of this reaction can then be used in the biosynthesis of lysine or in the pathway leading to homoserine, which participates in the biosynthesis of threonine, isoleucine and methionine . In bacteria there are three different aspartate kinase isozymes which differ in sensitivity to repression and inhibition by Lys, Met and Thr. AK1 and AK2 are bifunctional enzymes which both consist of an N-terminal AK domain and a C-terminal homoserine dehydrogenase domain. AK1 is involved in threonine biosynthesis and AK2, in that of methionine. The third isozyme, AK3 is monofunctional and involved in lysine synthesis. In archaea and plants there may be a single isozyme of AK which in plants is multifunctional. This entry represents a region encoding aspartate kinase activity found in both the monofunctional and bifunctional enzymes. Synonym(s): Aspartokinase; GO: 0004072 aspartate kinase activity, 0008652 amino acid biosynthetic process.
Probab=98.57 E-value=4.4e-07 Score=67.59 Aligned_cols=232 Identities=22% Similarity=0.236 Sum_probs=133.1
Q ss_pred CCHHHHHHHHHHCHHHH--H--HHC-CHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 24289999988473455--6--534-614402458421234411056799999998840311013788764331385267
Q gi|254780873|r 153 SDTSAVAIAAAIKADRC--D--IYT-DVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLF 227 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~--~--i~t-dV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~ 227 (411)
=+.|+++++.+|.+.-+ . =|+ ...||.|.+ .|.+|.= -++...-+.++-++|..+.|=.|.
T Consensus 133 E~~S~~l~~~~l~~~G~K~~~~~l~~~~~~I~T~~-------------~~~~A~p-~~~~~~~~~~~rL~~~L~~g~~ip 198 (504)
T TIGR00657 133 ERLSIALLSAALEELGVKAKAVSLTGAQAGILTDS-------------NFGRARP-DLAVIIEILTERLEPLLEEGDIIP 198 (504)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECC-------------CCCCCCC-CHHHHHHHHHHHHHHHHHCCCEEE
T ss_conf 58889999999974578520122114745455447-------------6676412-024677766999999984698799
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------------------------CCHHCCCCCCCCCCCCCH
Q ss_conf 61123777776543545454210122231011123466------------------------200012775000484100
Q gi|254780873|r 228 VRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKD------------------------EAQISLRRLRDHPGISAS 283 (411)
Q Consensus 228 i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~------------------------i~~Iti~~~~~~~g~~a~ 283 (411)
|--=|.-.....+.-|+-..+.|.. -.+=|-+++-+ +-.|+.+-|..=.-|-||
T Consensus 199 vvaGF~G~~~~g~~TtLGRGGSD~t--A~llA~aL~Ad~~~IyTDV~Gi~T~DPR~V~~Ar~i~~isy~Em~ELA~~GAK 276 (504)
T TIGR00657 199 VVAGFQGATEKGEITTLGRGGSDYT--AALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAK 276 (504)
T ss_pred EEEEEEECCCCCEEEEEECCHHHHH--HHHHHHHHCCCEEEEEECCCCCEECCCCCCCCCCCCCCCCHHHHHHHHHHCHH
T ss_conf 9840041057750798306806899--99999861996899987279503278863766520454487899999850316
Q ss_pred -----HHHHHHH-CCCCEECCCCCCCC-CCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCC
Q ss_conf -----0145541-28501112344322-2233310121230247766887898886059615897489169999667866
Q gi|254780873|r 284 -----IFSPLAE-AHINIDMIIQNVSE-DGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQ 356 (411)
Q Consensus 284 -----If~~La~-~~I~VdmI~qs~s~-~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~ 356 (411)
-++...+ ++|++-.-++..++ .| |..++..+.++.....+ +...+..+...++.+.+++.|.+|+
T Consensus 277 VLHPr~~ep~~~~~~ip~~v~st~~~~a~G-----T~I~~~~~~~~~~s~~~---~~~~~~~~~~~~~~~~~~v~g~~~~ 348 (504)
T TIGR00657 277 VLHPRTLEPAMRDYKIPIVVKSTFNPEAPG-----TLIVASSKAKKGESESM---EEPIVKGISLDKNQARVTVSGLGMK 348 (504)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCCCCC-----EEECCCCCCCCCCCCCC---CCCCEEEEEECCCEEEEEEEECCCC
T ss_conf 532788999846799518996077889996-----68717744575101226---6630234411366168998522678
Q ss_pred C-CCCHHHHHHHHHHHCC----CEEEEEE------EC--CCE---EEEEECHHH--HHHHHHHHHHHCCC
Q ss_conf 7-8557999999998679----8299997------07--848---999970889--99999999987097
Q gi|254780873|r 357 S-YAGVASAFFLCLAEKG----INIKAIT------TS--EIK---ISVLIDSAY--TELAVRSLHSCYGL 408 (411)
Q Consensus 357 ~-~~Giaakif~aL~~~~----InI~~is------sS--e~~---IS~VV~~~d--~~~Av~~LH~~F~l 408 (411)
. .+|+++++|.+|++++ |||.+|. +| +.+ |+|+|+++| +++|.+.||++|..
T Consensus 349 ~~~~g~~~~vf~~l~~~~~~l~i~v~~I~~~y~Q~~~~~~~~~~di~f~v~~~~i~~~~a~~~l~~~f~~ 418 (504)
T TIGR00657 349 GSMPGILAEVFGALAEAGHGLLINVDLISDKYKQSSSKIETSKTDISFTVDKEDIEADQAKELLKKEFLQ 418 (504)
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEEEEEEEECCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 7510278899999862379426321346753035567640153059999625357768999999887887
No 97
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.57 E-value=4.4e-08 Score=74.34 Aligned_cols=61 Identities=34% Similarity=0.531 Sum_probs=54.3
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 000127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++|++. +|.+.||+++++|+.|++++|||.||+|++|| .+|+|.++++|.+++..+|++.+
T Consensus 2 A~vsvVG~gM~~~~Gvaar~F~~La~~~INI~mIsQGsSE----inIs~vV~~~d~~~Av~alH~~F 64 (66)
T cd04919 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASE----INISCVIDEKDAVKALNIIHTNL 64 (66)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCE----EEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 3999977770359667999999999879987988527860----47999982899999999999986
No 98
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=98.57 E-value=6.7e-07 Score=66.35 Aligned_cols=111 Identities=27% Similarity=0.311 Sum_probs=85.3
Q ss_pred CHHHHHHHHCCCCEECCCCCCCCC-CCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCC
Q ss_conf 000145541285011123443222-2333101212302477668878988860596158974891699996678667855
Q gi|254780873|r 282 ASIFSPLAEAHINIDMIIQNVSED-GQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 (411)
Q Consensus 282 a~If~~La~~~I~VdmI~qs~s~~-~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~G 360 (411)
-+-++...+++|++-.-++..++. +.. | .++..-+. ..+.-|...++.++|++.|.+|...+|
T Consensus 259 prav~pa~~~~Ip~~i~~t~~p~~~GTl--I---~~~~~~~~-----------~~v~gIa~~~~~~~i~v~~~~~~~~~g 322 (447)
T COG0527 259 PRAVEPAMRSGIPLRIKNTFNPDAPGTL--I---TAETESDE-----------PVVKGIALDDNVALITVSGPGMNGMVG 322 (447)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCCEE--E---ECCCCCCC-----------CCEEEEECCCCEEEEEEECCCCCCCCC
T ss_conf 9888899876991899716999999539--9---56776767-----------724889707985899997147666524
Q ss_pred HHHHHHHHHHHCCCEEEEEEE--CCCEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 799999999867982999970--784899997088999999999987097
Q gi|254780873|r 361 VASAFFLCLAEKGINIKAITT--SEIKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 361 iaakif~aL~~~~InI~~iss--Se~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
+++++|.+|++++||+.+|.+ |+.+|+|.|++.+..+|.+.||++|..
T Consensus 323 ~~a~if~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~ 372 (447)
T COG0527 323 FAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLE 372 (447)
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 79999999997599679999236787599997344578999999998863
No 99
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=98.56 E-value=5e-08 Score=73.96 Aligned_cols=61 Identities=31% Similarity=0.467 Sum_probs=54.6
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 000127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++|++. +|.+.||+.+|+|+.|++++|||.||+|++||. +|+|.++++|.+++.+.|++..
T Consensus 2 a~isvvG~gM~~~~Gvaar~F~aL~~~~INi~mIsQgsSE~----sIs~~V~~~d~~~Av~~lh~~F 64 (66)
T cd04922 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSER----NISAVIDEDDATKALRAVHERF 64 (66)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCCCC----EEEEEEEHHHHHHHHHHHHHHH
T ss_conf 49999778967895779999999998899789996488732----7999980899999999999987
No 100
>PRK09084 aspartate kinase III; Validated
Probab=98.48 E-value=1.2e-06 Score=64.60 Aligned_cols=105 Identities=22% Similarity=0.238 Sum_probs=77.0
Q ss_pred CHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCH
Q ss_conf 00014554128501112344322223331012123024776688789888605961589748916999966786678557
Q gi|254780873|r 282 ASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGV 361 (411)
Q Consensus 282 a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gi 361 (411)
.+-++.+.+++|++..-.+-.++... +-|+ ++ .+ ....+..|...+++++|++-|.+|...+|+
T Consensus 259 p~av~pa~~~~IPi~I~nt~~P~~~G-T~I~---~~--~~----------~~~~vk~I~~~~~~~~i~i~~~~m~~~~G~ 322 (447)
T PRK09084 259 PATLLPAVRSNIPVFVGSSKDPEAGG-TWIT---ND--TE----------NPPLFRAIALRRNQTLLTLHSLNMLHAHGF 322 (447)
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCCC-EEEE---CC--CC----------CCCCCCCEECCCCEEEEEEEECCCCCCCCH
T ss_conf 58899999819759995578989997-0894---26--65----------666622111148769999983786632018
Q ss_pred HHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHH
Q ss_conf 99999999867982999970784899997088999999999
Q gi|254780873|r 362 ASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSL 402 (411)
Q Consensus 362 aakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~L 402 (411)
++|+|.+|++++||+.|+++|+.++|+.++..+...+.+.+
T Consensus 323 ~~~if~~l~~~~I~vd~i~sse~sis~~i~~~~~~~~~~~~ 363 (447)
T PRK09084 323 LAEVFGILARHKISVDLITTSEVSVSLTLDTTGSTSTGDTL 363 (447)
T ss_pred HHHHHHHHHHCCCCEEEEECCCCEEEEEECCCHHHHHHHHH
T ss_conf 99999999975992799980465378997041145556689
No 101
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.46 E-value=1.5e-05 Score=57.21 Aligned_cols=217 Identities=21% Similarity=0.297 Sum_probs=126.2
Q ss_pred CEEEEEECCCCCCCH----------HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH---CCCCHHHHHH
Q ss_conf 669996085845888----------999999999999996799889998068730489999999861---4899889999
Q gi|254780873|r 2 ARIVMKFGGTSVANI----------DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT---SIDNARERDV 68 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~----------~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~---~~~~~~~~d~ 68 (411)
+++|.-.||.++... +.++..++++....++|+++++.+.-=--+-+.++. ..+. +...+.-+|.
T Consensus 1 ~~iVvALGGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq--~~aa~~~~~~p~~PLd~ 78 (312)
T COG0549 1 KRIVVALGGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQ--NEAADSEKGVPAYPLDV 78 (312)
T ss_pred CEEEEEECCHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHH--HHHHCCCCCCCCCCHHH
T ss_conf 9189993534534799998989999999999999999985588599971897567799987--66532545788864688
Q ss_pred HHHHHHHHHHHHHH----HHHHHCCCCC--CC--------------CCCC-------------------CCCCCCCCCCC
Q ss_conf 99831299999999----9998439986--35--------------6733-------------------24551213355
Q gi|254780873|r 69 VISTGEQVSSGLMV----LALQSLGIQA--IS--------------LQGW-------------------QIPIMTDSLHG 109 (411)
Q Consensus 69 i~s~GE~~s~~l~a----~~l~~~G~~a--~~--------------l~~~-------------------~~~i~t~~~~~ 109 (411)
+.+.-+=+--+++. ..|..+|++- .. .++. .|-+.-|...+
T Consensus 79 ~~AmsQG~IGy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG 158 (312)
T COG0549 79 LVAMSQGMIGYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRG 158 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECCCCC
T ss_conf 86730128999999999977642587774269999999768984435999877787699999998866396786549987
Q ss_pred CCCCCC-------CCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCC----------CCHHHHHHHHHHCHHHHHHH
Q ss_conf 200012-------3621003343106805860343335568424430686----------24289999988473455653
Q gi|254780873|r 110 MARICR-------VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGG----------SDTSAVAIAAAIKADRCDIY 172 (411)
Q Consensus 110 ~a~~~~-------~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGG----------SD~tA~~ia~~l~A~~~~i~ 172 (411)
..++.. .+.+.+..+++++.++|+.|-=|. -+...++ -|.+++++|..++||.+.|.
T Consensus 159 ~RRVVpSP~P~~IvE~~~Ik~L~~~g~vVI~~GGGGI------PVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liIL 232 (312)
T COG0549 159 YRRVVPSPKPVRIVEAEAIKALLESGHVVIAAGGGGI------PVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIIL 232 (312)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCC------CEEECCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEE
T ss_conf 3681499997120317889999867988999578874------4486189731036898118778999987158989998
Q ss_pred CCHHHHEECCCCC-CCCCCEECCCCHHHHHHHH--------HCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 4614402458421-2344110567999999988--------403110137887643313852676112
Q gi|254780873|r 173 TDVCGIYTTDPRI-EPKAHLMKKISFEEMLEMS--------SLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 173 tdV~Gi~taDPr~-v~~a~~i~~lsy~Ea~eLa--------~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
||||+||- ++ -|+-+.+++++.+||...- ++|-||. -|+..+...+=+..|.+.
T Consensus 233 TdVd~Vy~---n~gkp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVe--Aai~FV~~~gk~A~ItsL 295 (312)
T COG0549 233 TDVDAVYV---NFGKPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVE--AAISFVENTGKPAIITSL 295 (312)
T ss_pred ECCCHHEE---CCCCCCCHHHCCCCHHHHHHHHHCCCCCCCCCCHHHH--HHHHHHHCCCCCEEECCH
T ss_conf 54651111---2799551122246999999998647988887318899--999999847983697759
No 102
>PRK09034 aspartate kinase; Reviewed
Probab=98.46 E-value=1.5e-07 Score=70.72 Aligned_cols=112 Identities=13% Similarity=0.121 Sum_probs=77.4
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHH
Q ss_conf 00145541285011123443222233310121230247766887898886059615897489169999667866785579
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gia 362 (411)
+-+.++.+++|++..-.+-.++... +-|. +.... .....+..|...+++++|.+-|.+|...+|++
T Consensus 260 ~ti~p~~~~~IPi~I~nt~~P~~~G-T~I~---~~~~~----------~~~~~V~gIa~~~~v~~i~i~~~~m~~~~g~~ 325 (450)
T PRK09034 260 EALIPAYRGGIPINIKNTNNPEDPG-TLIV---HDKRF----------NPKNPITGIAGDKGFTVIYISKYLMNREVGFG 325 (450)
T ss_pred CCCCHHHCCCEEEEEEECCCCCCCC-EEEE---ECCCC----------CCCCCEEEEEECCCEEEEEEECCCCCCCCCHH
T ss_conf 3145213065489997279999996-0896---27876----------66683478872386699999436767751489
Q ss_pred HHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHH-----HHHHHHHHHCCC
Q ss_conf 9999999867982999970784899997088999-----999999987097
Q gi|254780873|r 363 SAFFLCLAEKGINIKAITTSEIKISVLIDSAYTE-----LAVRSLHSCYGL 408 (411)
Q Consensus 363 akif~aL~~~~InI~~issSe~~IS~VV~~~d~~-----~Av~~LH~~F~l 408 (411)
+++|.+|++++|++.++++|+.++|+.+++++.+ ..++.|.+.+.+
T Consensus 326 ~~if~~l~~~~isv~~i~ts~~~is~~v~~~~~~~~~~~~~~~el~~~~~~ 376 (450)
T PRK09034 326 RKILQILEDHNISYEHMPSGIDDLSIIIREKQLTNEKEDEILNEIKQELNP 376 (450)
T ss_pred HHHHHHHHHCCCCEEEEECCCCEEEEEECHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 999999998299488652377548999723330389999999999865597
No 103
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=98.41 E-value=1.9e-06 Score=63.37 Aligned_cols=58 Identities=29% Similarity=0.367 Sum_probs=50.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-----CCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 6999966786678557999999998679829999707-----84899997088999999999987
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTS-----EIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issS-----e~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
|+|++. |+.+.||+++++|++|++++||+-||.+| ..+|||-|+++|.++|++.|.+.
T Consensus 2 Arvtl~--gvpd~PG~aa~iF~~La~~~InVDmIvQ~~~~~~~~disFTv~~~dl~~a~~vl~~~ 64 (75)
T cd04913 2 AKITLR--GVPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKL 64 (75)
T ss_pred CEEEEE--CCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCEEEEEEECHHHHHHHHHHHHHH
T ss_conf 599982--899999669999999998598479998616789945899990499999999999999
No 104
>PRK09181 aspartate kinase; Validated
Probab=98.39 E-value=8.6e-06 Score=58.88 Aligned_cols=111 Identities=14% Similarity=0.104 Sum_probs=81.6
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHH
Q ss_conf 00145541285011123443222233310121230247766887898886059615897489169999667866785579
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gia 362 (411)
+-++..-+++|++..-.+-.++... +-|+ .+... ....+..|...++++.|++-|.+|...+|++
T Consensus 283 ~~~~p~~~~~Ipi~v~nt~~p~~~G-T~I~---~~~~~-----------~~~~v~~Ia~~~~v~~i~v~~~~m~~~~g~~ 347 (476)
T PRK09181 283 KAAKGLRQAGIPLRIKNTFEPEHPG-TLIT---KDYVS-----------EQPRVEIIAGRDKVFALEVFDQDMVGEDGYD 347 (476)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCC-EEEE---CCCCC-----------CCCCEEEEEECCCEEEEEEECCCCCCCCCHH
T ss_conf 6789999759968997068999997-5994---68768-----------7775389984575279995068878885889
Q ss_pred HHHHHHHHHCCCEEEEEEECCCEEEEEE--CHHHHHHHHHHHHHHCCC
Q ss_conf 9999999867982999970784899997--088999999999987097
Q gi|254780873|r 363 SAFFLCLAEKGINIKAITTSEIKISVLI--DSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 363 akif~aL~~~~InI~~issSe~~IS~VV--~~~d~~~Av~~LH~~F~l 408 (411)
+|+|++|++++|++.++++|+.++++++ +.++.+++++.|.++|..
T Consensus 348 ~~if~~l~~~~I~v~~~~ss~~sisi~~~~~~~~~~~~~~~l~~~~~~ 395 (476)
T PRK09181 348 AEIMEILTRHKVRYISKDTNANTITHYLSGSLKSLKRVLADLEKRYPN 395 (476)
T ss_pred HHHHHHHHHCCCCEEEECCCCCEEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 999999997599689852577638999469999999999999865466
No 105
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=98.38 E-value=4.6e-06 Score=60.73 Aligned_cols=74 Identities=32% Similarity=0.351 Sum_probs=64.2
Q ss_pred CCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 24289999988473455653461440245842123441105679999999884031101378876433138526761123
Q gi|254780873|r 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSF 232 (411)
Q Consensus 153 SD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ntf 232 (411)
||.-++.+|+.++|.++.+.|||||||+-+|.= +++.+++-.|.. . |-..+.|-.=+++.++++..||-|--
T Consensus 118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~~----kLv~eI~A~dl~---~-~~t~vD~~~P~Ll~k~~m~~~Vvng~ 189 (212)
T COG2054 118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPKG----KLVREIRASDLK---T-GETSVDPYLPKLLVKYKMNCRVVNGK 189 (212)
T ss_pred CCHHHHHHHHHCCCCEEEEEECCCCCCCCCCCC----HHHHHHHHHHCC---C-CCCCCCCHHHHHHHHCCCCEEEECCC
T ss_conf 318999999972982799995378601158963----056662175535---6-75315604068999718715998787
Q ss_pred CC
Q ss_conf 77
Q gi|254780873|r 233 ED 234 (411)
Q Consensus 233 ~~ 234 (411)
+|
T Consensus 190 ~p 191 (212)
T COG2054 190 EP 191 (212)
T ss_pred CH
T ss_conf 88
No 106
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=98.31 E-value=4.2e-07 Score=67.75 Aligned_cols=60 Identities=43% Similarity=0.604 Sum_probs=53.6
Q ss_pred HHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 00127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 268 QISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 268 ~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
+|++. +|.+.||+.+++|+.|++++|||.||+|+.|+ .+|+|.++++|.+++.+.|++.+
T Consensus 2 ~vsivG~gm~~~~gi~a~~f~~L~~~~Inv~~isq~~se----~~Is~vV~~~d~~~av~~Lh~~f 63 (65)
T cd04892 2 LVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSE----VNISFVVDEDDADKAVKALHEEF 63 (65)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC----CEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 899988884778059999999999879987998835863----05999984899999999999872
No 107
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=98.31 E-value=1e-05 Score=58.31 Aligned_cols=70 Identities=9% Similarity=0.053 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 0111234662000127--750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 257 ITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 257 Vk~Is~~~~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
...|...++++.|++- +|.+++|+.+|+|+.|++.+|++.++ +.|| .+||+.++++|.++++.+|++.+-
T Consensus 382 ~~~i~~~~~laiVSiVG~gM~~~~GVAar~F~aLa~~nI~iiaq--g~SE----inIS~VI~~~d~~kAv~aLH~~fF 453 (810)
T PRK09466 382 PGELRLREGLALVALVGAGVTRNPLHCHRFYQQLKGQPVEFLWQ--SEDG----LSLVAVLRQGPTESLIQGLHQSLF 453 (810)
T ss_pred CCCEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE--CCCC----CEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 67279718867999956873448527999999987389408998--1788----569999747669999999999984
No 108
>PRK08210 aspartate kinase I; Reviewed
Probab=98.29 E-value=1.3e-05 Score=57.63 Aligned_cols=111 Identities=18% Similarity=0.146 Sum_probs=78.9
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHH
Q ss_conf 00145541285011123443222233310121230247766887898886059615897489169999667866785579
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gia 362 (411)
+-++...+++|++..-++-....+ +-|+-..+...... .+...+..|...+++++|++-|.+ ..+|++
T Consensus 219 ~tv~pa~~~~Ipi~I~nT~~~~~G--T~I~~~~~~~~~~~--------~~~~~VtgIa~~~~i~~i~i~~~~--~~~g~~ 286 (405)
T PRK08210 219 RAVEIAMQANIPLRIRSTYSDSKG--TLITSYGDATKGSD--------VEERLITGIAHVSNVTQIKVKAKE--NAYDLQ 286 (405)
T ss_pred HHHHHHHHCCCEEEEECCCCCCCC--CEEECCCCCCCCCC--------CCCCCEEEEEECCCEEEEEEECCC--CCCHHH
T ss_conf 999999973983999736899998--67934676544554--------333424889802887999996589--961689
Q ss_pred HHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 9999999867982999970784899997088999999999987
Q gi|254780873|r 363 SAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 363 akif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
+|+|..|++++|++.||++|+.+++|.|+++|.+++.+.|++.
T Consensus 287 ~~if~~la~~~IsVd~Is~s~~~i~ftv~~~d~~~~~~il~el 329 (405)
T PRK08210 287 QEVFKALAEAGISVDLINIFPTEVVFTVSDEDSEKAKEILEEL 329 (405)
T ss_pred HHHHHHHHHCCCEEEEEEECCCCEEEEECHHHHHHHHHHHHHC
T ss_conf 9999999984981799993347679997589999999999974
No 109
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=5.1e-07 Score=67.15 Aligned_cols=47 Identities=17% Similarity=0.431 Sum_probs=37.2
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH
Q ss_conf 2000127--7500048410001455412850111234432222333101212302
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS 318 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~ 318 (411)
+++++++ +|...+||++++|++|++++|+||||++| | ++++++++..
T Consensus 1 vtl~~i~s~~Ml~a~GFLa~VF~if~~h~iSVDlitTS--E----vsVslTlD~~ 49 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTS--E----TNVTVSLDPD 49 (75)
T ss_pred CEEEEECCHHHHHHCCHHHHHHHHHHHCCCCEEEEEEE--E----EEEEEEECCC
T ss_conf 98999647647656264999999999849717899701--5----7999997588
No 110
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.25 E-value=5.7e-06 Score=60.09 Aligned_cols=55 Identities=33% Similarity=0.440 Sum_probs=48.9
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC-----CEEEEEECHHHHHHHHHHH
Q ss_conf 69999667866785579999999986798299997078-----4899997088999999999
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSE-----IKISVLIDSAYTELAVRSL 402 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe-----~~IS~VV~~~d~~~Av~~L 402 (411)
++|++.| ..+.||+++++|+.|++++|||-||.++. .++||-|+++|.++|++.|
T Consensus 1 akitv~~--vpd~pg~aa~iF~~LA~~~InVDmIvQ~~~~~~~~~isFTv~~~dl~~a~~~L 60 (61)
T cd04891 1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL 60 (61)
T ss_pred CEEEECC--CCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEECHHHHHHHHHHH
T ss_conf 9487748--99997579999999998598179998658889952189982498999999984
No 111
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.20 E-value=1.1e-06 Score=64.96 Aligned_cols=55 Identities=24% Similarity=0.297 Sum_probs=49.5
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++...+++++|+|+.|+++||||.||+|+.|| ++|+|.+++.|.+++..+|++.+
T Consensus 9 ~~~~~~~ia~r~F~al~~~gvNv~mIsQGaSe----~NIs~vV~~~d~~~Av~alH~~F 63 (65)
T cd04918 9 NVQRSSLILERAFHVLYTKGVNVQMISQGASK----VNISLIVNDSEAEGCVQALHKSF 63 (65)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC----CCEEEEECHHHHHHHHHHHHHHH
T ss_conf 34334178999999998689847987178873----42899980789999999999986
No 112
>PRK06635 aspartate kinase; Reviewed
Probab=98.16 E-value=1.5e-05 Score=57.24 Aligned_cols=107 Identities=18% Similarity=0.241 Sum_probs=66.7
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHH
Q ss_conf 00145541285011123443222233310121230247766887898886059615897489169999667866785579
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gia 362 (411)
+-++...+++|++..-.+-.++.+.. |+ ++... .++..+..|...+++++|++. +|...+|++
T Consensus 214 ~ti~pa~~~~Ipi~v~nTf~p~~GT~--I~---~~~~~----------~~~~~V~gIa~~~~~~~i~~~--~~~~~~G~~ 276 (402)
T PRK06635 214 RSVELAKKYNVPLRVRSSFSEEPGTL--IT---EEEEI----------MEQPVVTGIAFDKDEAKVTVV--GVPDKPGIA 276 (402)
T ss_pred HHHHHHHHCCCEEEEEECCCCCCCEE--EE---CCCCC----------CCCCCEEEEECCCHHHHHHHH--CCCCCCCHH
T ss_conf 88999997498089985678989739--95---38864----------434430134213214431010--478866689
Q ss_pred HHHHHHHHHCCCEEEEEEEC-----CCEEEEEECHHHHHHHHHHHHHHC
Q ss_conf 99999998679829999707-----848999970889999999999870
Q gi|254780873|r 363 SAFFLCLAEKGINIKAITTS-----EIKISVLIDSAYTELAVRSLHSCY 406 (411)
Q Consensus 363 akif~aL~~~~InI~~issS-----e~~IS~VV~~~d~~~Av~~LH~~F 406 (411)
+|+|+.|++++||+.||+++ ..+|||.|+.+|.+++.+.|++.+
T Consensus 277 ~~vf~~l~~~~i~vd~Isq~~s~~~~~~is~~v~~~d~~~~~~~l~~~~ 325 (402)
T PRK06635 277 AQIFGPLADANINVDMIVQNVSEDGKTDLTFTVPRSDLEKALELLEEVK 325 (402)
T ss_pred HHHHHHHHHCCEEEEEEEEECCCCCCEEEEEEECHHHHHHHHHHHHHHH
T ss_conf 9998888743536789997127899601899963888999999999999
No 113
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=98.16 E-value=1.1e-06 Score=64.80 Aligned_cols=67 Identities=19% Similarity=0.328 Sum_probs=44.1
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHH----HHHHHHHHHHHHHHCCCCEEE
Q ss_conf 000127--75000484100014554128501112344322223331012123024----776688789888605961589
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS----LEKALAVLSDNKENIGYDVIQ 340 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d----~~~~~~~L~~~~~~~~~~~I~ 340 (411)
++|+++ +|...+||++++|++|++++++||||++| | ++++++++... ......+++++.+ +..++
T Consensus 2 ~~i~i~s~~m~~~~GFLa~vF~if~~~~vsVDlisTS--E----vsVS~tlD~~~~~~~~~~l~~l~~eL~~---~g~V~ 72 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTS--E----VSVSLTLDPTKNLSDQLLLDALVKDLSQ---IGDVE 72 (75)
T ss_pred EEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEECC--C----EEEEEEECCCCCCCCHHHHHHHHHHHHH---CCEEE
T ss_conf 8999845646656328999999999829955899805--5----1899998488753206679999999995---55489
Q ss_pred EE
Q ss_conf 74
Q gi|254780873|r 341 HE 342 (411)
Q Consensus 341 ~~ 342 (411)
++
T Consensus 73 Ve 74 (75)
T cd04912 73 VE 74 (75)
T ss_pred EE
T ss_conf 63
No 114
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.13 E-value=1.3e-06 Score=64.49 Aligned_cols=47 Identities=23% Similarity=0.510 Sum_probs=37.4
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH
Q ss_conf 2000127--7500048410001455412850111234432222333101212302
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS 318 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~ 318 (411)
+++|+++ +|....||++++|++|++|+++||||++| | ++++++++..
T Consensus 1 Qt~i~i~s~~m~~~~GFLa~vF~if~~h~isVDlitTS--E----vsVslTlD~~ 49 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTS--E----ISVALTLDNT 49 (75)
T ss_pred CEEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEECC--E----EEEEEEECCC
T ss_conf 95999945006665367999999999819954899704--2----6999997588
No 115
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=98.06 E-value=1.3e-06 Score=64.33 Aligned_cols=57 Identities=53% Similarity=0.761 Sum_probs=48.8
Q ss_pred HHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHH
Q ss_conf 00127--75000484100014554128501112344322223331012123024776688789
Q gi|254780873|r 268 QISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLS 328 (411)
Q Consensus 268 ~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~ 328 (411)
+|++. +|.+.+|+.+++|+.|++++|+|+||+|+.++ .+++|++++++.+++.+.|+
T Consensus 2 ~isi~g~~~~~~~~~~~~if~~L~~~~i~v~~I~q~~s~----~~isf~v~~~~~~~a~~~L~ 60 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESE----VNISFTVDESDLEKAVKALH 60 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCCHHHHHCCCCC----CEEEEEEEHHHHHHHHHHHC
T ss_conf 798988883788379999999999849998894026774----33999984899999999749
No 116
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=98.06 E-value=2.9e-06 Score=62.02 Aligned_cols=58 Identities=41% Similarity=0.643 Sum_probs=50.1
Q ss_pred HCC--CCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 012--7750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 269 ISL--RRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 269 Iti--~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
|++ .+|.+.||+.+|+|+.|++++|||.||+ +|| .+|++.++++|.+++.+.|++.++
T Consensus 3 isvVG~gm~~~~Gvaarif~aL~~~~Ini~mIs--sSE----~~Is~vV~~~~~~~Av~~Lh~~F~ 62 (63)
T cd04936 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSE----IKISCLIDEDDAEKAVRALHEAFE 62 (63)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEE--CCC----CEEEEEECHHHHHHHHHHHHHHHC
T ss_conf 989898847892299999999998799859998--356----669999829999999999998718
No 117
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=98.05 E-value=3.2e-06 Score=61.74 Aligned_cols=58 Identities=41% Similarity=0.646 Sum_probs=50.1
Q ss_pred HCC--CCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 012--7750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 269 ISL--RRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 269 Iti--~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
|++ .+|.+.||+.+|+|+.|++++|||.||++ || .+|+|.++++|.+++.+.|++.++
T Consensus 3 isvvG~Gm~~~~Gvaarif~aL~~~~Inv~~iss--SE----~~Is~vV~~~d~~~Av~aLh~~F~ 62 (63)
T cd04923 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SE----IKISCLVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEEC--CC----CEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 9998888478943999999999987998799982--56----779999808999999999998718
No 118
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=98.05 E-value=7.6e-05 Score=52.51 Aligned_cols=105 Identities=19% Similarity=0.308 Sum_probs=77.2
Q ss_pred HHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHH
Q ss_conf 01455412850111234432222333101212302477668878988860596158974891699996678667855799
Q gi|254780873|r 284 IFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVAS 363 (411)
Q Consensus 284 If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaa 363 (411)
-+....+++|++..=++-.++... +-|+-.. +. ...+..|..+++..+|++-..+|....|..+
T Consensus 276 Ti~Pa~~~~IPv~VknT~~Pe~~G-T~I~~~~-----~~----------~~~~~aia~r~~~tll~i~s~~M~~~~GFla 339 (865)
T PRK08961 276 SIKPCRDAGVPMAILDTERPDLSG-TSIDGNA-----EP----------VPGVKAISRRNGIVLVSMEGIGMWQQVGFLA 339 (865)
T ss_pred HHHHHHHCCCCEEEECCCCCCCCC-CEEECCC-----CC----------CCCEEEEEEECCCEEEEECCCCHHHHCCHHH
T ss_conf 679999769967981789989997-2784898-----77----------7552799982693899964601121136599
Q ss_pred HHHHHHHHCCCEEEEEEECCCEEEEEEC-------HHHHHHHHHHHHH
Q ss_conf 9999998679829999707848999970-------8899999999998
Q gi|254780873|r 364 AFFLCLAEKGINIKAITTSEIKISVLID-------SAYTELAVRSLHS 404 (411)
Q Consensus 364 kif~aL~~~~InI~~issSe~~IS~VV~-------~~d~~~Av~~LH~ 404 (411)
|+|..+++++|.|-+|+|||+|+|+=+| ..-.++.++.|-+
T Consensus 340 ~vF~i~~~~~isvDli~TSEvsvs~tld~~~~~~~~~~~~~l~~~l~~ 387 (865)
T PRK08961 340 DVFTLFKKHGLSVDLIGSAETNVTVSLDPSENLVNTDVLAALSDDLSQ 387 (865)
T ss_pred HHHHHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 999999983995489960246899996686454677999999999985
No 119
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=98.04 E-value=3.3e-06 Score=61.69 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=51.6
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 000127--750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
+.|++- +|.++||+.+++|+.|++.+||+.||++| | +.||..++++|.+++.++|++.++
T Consensus 2 AKVSiVG~GM~~~pGVaa~~f~aL~~~~InI~~istS--e----i~IS~vV~~~d~~~Av~alH~~F~ 63 (64)
T cd04937 2 AKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADS--H----TTISCLVSEDDVKEAVNALHEAFE 63 (64)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEEECC--C----CEEEEEEEHHHHHHHHHHHHHHHC
T ss_conf 7799977887788529999999999789957999716--8----289999808899999999998738
No 120
>TIGR00746 arcC carbamate kinase; InterPro: IPR003964 The arginine dihydrolase (AD) pathway is found in many prokaryotes and some primitive eukaryotes. The three- enzyme anaerobic pathway breaks down L-arginine to form 1 mol of ATP, carbon dioxide and ammonia. In simpler bacteria, the first enzyme, arginine deiminase, can account for up to 100f total cell protein . Carbamate kinase is involved in the last step of the AD pathway, converting carbamoyl phosphate and ADP into ammonia, carbon dioxide and ATP . The second step of the pathway involves the degradation of L-citrulline to carbamoyl phosphate and L-ornithine, using ornithine carbamoyltransferase . The crystal structure of Enterococcus faecium carbamate kinase has been determined to 2.8A resolution . The enzyme exists as a homodimer of two 33kDa subunits. The hallmark of the dimer is a 16-stranded beta-sheet, surrounded by alpha-helices. Each subunit contains an active site within a large crevice.; GO: 0008804 carbamate kinase activity, 0006525 arginine metabolic process.
Probab=98.02 E-value=0.0003 Score=48.51 Aligned_cols=222 Identities=21% Similarity=0.281 Sum_probs=136.2
Q ss_pred CEEEEEECCCCCC------CH----HHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHH-CCCCHHHHHHHH
Q ss_conf 6699960858458------88----999999999999996799889998068730489999999861-489988999999
Q gi|254780873|r 2 ARIVMKFGGTSVA------NI----DCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVT-SIDNARERDVVI 70 (411)
Q Consensus 2 ~~iV~KfGGtSv~------~~----~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~-~~~~~~~~d~i~ 70 (411)
|++|.=.||..+- |+ +.++..+..+.+..++|+++|+++.-==-+=+.|+.-...-. ....+.-+|.+.
T Consensus 1 k~~VvALGGNAlLqRg~~~s~~~Q~~nv~~t~~~l~~~~~~G~~lvi~HGNGPQVG~LlLQ~~A~~~~~~~~~~PLDV~G 80 (321)
T TIGR00746 1 KRVVVALGGNALLQRGEKGSAENQRKNVEQTAPQLVKLIKRGYELVITHGNGPQVGLLLLQNQAADSEKVVPAMPLDVLG 80 (321)
T ss_pred CEEEEEECCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCEEC
T ss_conf 94889737358863788379889999999999999999861897999847803688899999897603788988743202
Q ss_pred --HHHH--HHHHHHHHHHHHHCCCCCCCC--------CC----CCC------CCCC----------------------CC
Q ss_conf --8312--999999999998439986356--------73----324------5512----------------------13
Q gi|254780873|r 71 --STGE--QVSSGLMVLALQSLGIQAISL--------QG----WQI------PIMT----------------------DS 106 (411)
Q Consensus 71 --s~GE--~~s~~l~a~~l~~~G~~a~~l--------~~----~~~------~i~t----------------------~~ 106 (411)
|.|. .|-..-|...|...|...... |+ ++- |+.+ |+
T Consensus 81 AmSQG~IGYml~q~l~~~L~~~g~~~~vaT~~TQt~VD~~DpAF~nPTKpiGPfY~e~EAk~~~a~~~g~~~ke~tdGD~ 160 (321)
T TIGR00746 81 AMSQGMIGYMLQQALNNELPKEGLEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYDEEEAKKRLAAEKGWIVKEDTDGDD 160 (321)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCC
T ss_conf 03353078999999999998668999853899988888888887854975168889899999998617870047888767
Q ss_pred CCCCCC------CCC-CCCCCHHHHHHHCCEEEEECCCCC--CCCCCEEEECCCC------CCHHHHHHHHHHCHHHHHH
Q ss_conf 355200------012-362100334310680586034333--5568424430686------2428999998847345565
Q gi|254780873|r 107 LHGMAR------ICR-VDEKKIVTHLKKKQVVVITGFQGL--SHDNSVTTLGRGG------SDTSAVAIAAAIKADRCDI 171 (411)
Q Consensus 107 ~~~~a~------~~~-~~~~~l~~~l~~~~v~v~~Gf~g~--~~~g~~ttlgRGG------SD~tA~~ia~~l~A~~~~i 171 (411)
..+..| +.+ .+.+.|..+++++.++|++|==|. ..+|.-.-| -| =|..+..||..++||.+.|
T Consensus 161 g~gwRrVVPSP~P~~I~E~~~Ik~L~e~g~iVI~~GGGGvPv~~dg~~kkl--~GVeAVIDKDlA~~~LA~~~~AD~L~I 238 (321)
T TIGR00746 161 GRGWRRVVPSPRPKDIVEAEVIKTLVENGVIVICSGGGGVPVVEDGAEKKL--KGVEAVIDKDLASEKLAEEVNADILVI 238 (321)
T ss_pred CCCCEEECCCCCCCCCEECHHHHHHHHCCEEEEEECCCCEEEEECCCCCEE--EEEEEEECHHHHHHHHHHHHCCCEEEE
T ss_conf 783037657999966312077899864882799857882035662894302--201103236688898887743874431
Q ss_pred HCCHHHHEECCCCC-CCCCCEECCCCHHHHHHHH---HC-----CCCCHHHHHHHHHHHCCC-EEEEEC
Q ss_conf 34614402458421-2344110567999999988---40-----311013788764331385-267611
Q gi|254780873|r 172 YTDVCGIYTTDPRI-EPKAHLMKKISFEEMLEMS---SL-----GAKVMQVRSVELAMLYKM-CLFVRS 230 (411)
Q Consensus 172 ~tdV~Gi~taDPr~-v~~a~~i~~lsy~Ea~eLa---~~-----Gakvlhp~~~~~~~~~~i-pi~i~n 230 (411)
.||||++|- .+ -|+=|.|.+++.+|+.+|. .| |-||- -|++.+...+= +-.|-+
T Consensus 239 LTDVd~vy~---nygkP~e~~L~~~~~~El~~~~~~G~Fa~GSMgPKV~--AaI~Fv~~~G~~~AiIt~ 302 (321)
T TIGR00746 239 LTDVDAVYV---NYGKPDEKKLREVTVEELEDYEKDGHFAAGSMGPKVE--AAIEFVESRGKKRAIITS 302 (321)
T ss_pred EHHHHHHHH---CCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHHH--HHHHHHHCCCCCCCEECC
T ss_conf 020124522---0778247887246988999998558866889860389--998998718887400058
No 121
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.99 E-value=4.4e-06 Score=60.88 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=37.0
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH
Q ss_conf 000127--7500048410001455412850111234432222333101212302
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS 318 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~ 318 (411)
++++++ +|.+..||++++|++|++++++||||++| | ++++.+++..
T Consensus 2 t~i~i~S~rMl~a~GFLa~VF~if~~~~isVD~ItTS--E----VsVSlTlD~s 49 (78)
T cd04933 2 TMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATS--E----VSISLTLDPS 49 (78)
T ss_pred EEEEEECHHHHHHCCHHHHHHHHHHHCCCCEEEEEEE--E----EEEEEEECCC
T ss_conf 8999834116777445999999999839956999822--5----7999997584
No 122
>TIGR00656 asp_kin_monofn asparate kinase, monofunctional class; InterPro: IPR005260 Aspartate kinase catalyzes the first step in the biosynthesis of Lys (via its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of these three amino acid end products . The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenase, which catalyses the next step in the biosynthesis of these amino acids. Inn contrast, the Lys-sensitive form (III) is a monofunctional enzyme; homoserine dehydrogenase is not part of the Lys biosynthetic pathway. This entry represents a subclass of aspartate kinases that are mostly Lys-sensitive and are not fused to homoserine dehydrogenase. The E. coli enzyme is a homodimer, while the Bacillus and Corynebacterium enzymes are alpha 2/beta 2 heterotetramers, where the beta subunit is translated from an in-phase alternative initiator at Met-246 , . The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. ; GO: 0004072 aspartate kinase activity, 0009058 biosynthetic process.
Probab=97.98 E-value=3.4e-05 Score=54.90 Aligned_cols=124 Identities=24% Similarity=0.289 Sum_probs=86.9
Q ss_pred CCCHHHHHH-HHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECC-EEEEEEECCCCCC
Q ss_conf 410001455-41285011123443222233310121230247766887898886059615897489-1699996678667
Q gi|254780873|r 280 ISASIFSPL-AEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDN-LVKISAIGIGMQS 357 (411)
Q Consensus 280 ~~a~If~~L-a~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~-~a~ISvVG~gm~~ 357 (411)
+.-+-++.. -+.++++....+...+.. =+...++.|+......-.+..+. .+..+...++ .+.+++.|.+|.+
T Consensus 265 l~p~~~~~~d~~~~~~~~~~~~~~~~~~----gt~~~~~~d~~~~~~~~~d~~~~-~~~~~~~~~~p~~~~~~~g~~~~~ 339 (480)
T TIGR00656 265 LHPRTLEPADKEGGVPIEVRSSFDPEAE----GTLITNEKDFHGSSMEGPDVFEP-LVKGIALSKNPVARLTVPGPGMLG 339 (480)
T ss_pred CCCCCCCCCCCCCCCCEEEEECCCCCCC----CCEECCCCCCCCCCCCCCCHHHH-HHHHEEECCCCEEEEEECCCCCCC
T ss_conf 0321002011013663588624577767----41430443334566667402332-111013147852588860543235
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECC----CEEEEEECHHHHHHHHHHHHHHCCC
Q ss_conf 85579999999986798299997078----4899997088999999999987097
Q gi|254780873|r 358 YAGVASAFFLCLAEKGINIKAITTSE----IKISVLIDSAYTELAVRSLHSCYGL 408 (411)
Q Consensus 358 ~~Giaakif~aL~~~~InI~~issSe----~~IS~VV~~~d~~~Av~~LH~~F~l 408 (411)
.+|+++++|.+|++++||+.++.++. .++++.|++++.+.+.+.||..+.+
T Consensus 340 ~~g~~~~~~~~la~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (480)
T TIGR00656 340 KPGFLAELFGALAERGINVDLISQTPSEDKTSISLTVDEEDADEAVRALKDESGA 394 (480)
T ss_pred CCHHHHHHHHHHHHCCCEEEEEECCCCCCCCEEEEEEECCCCHHHHHHHHHHHHH
T ss_conf 5405889998874157428998506776633058997246606899988765433
No 123
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=97.92 E-value=9.4e-06 Score=58.63 Aligned_cols=59 Identities=20% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH--HHHHHHHHHHHHHH
Q ss_conf 00127--7500048410001455412850111234432222333101212302--47766887898886
Q gi|254780873|r 268 QISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS--SLEKALAVLSDNKE 332 (411)
Q Consensus 268 ~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~--d~~~~~~~L~~~~~ 332 (411)
.|.++ +|....||++++|++|++++++||||++| | +++|.+++.. +......+++++++
T Consensus 3 vinI~Snrm~~ahGFLa~vF~if~~~~~sVDlIsTS--E----V~VSmti~~~~~~~~~l~~~~~eL~~ 65 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTS--E----VHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC--E----EEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999831501335178999999998749953899812--3----79999983378755559999999985
No 124
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=97.83 E-value=0.00011 Score=51.42 Aligned_cols=59 Identities=22% Similarity=0.366 Sum_probs=51.0
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHH-------HHHHHHHHHHH
Q ss_conf 699996678667855799999999867982999970784899997088-------99999999998
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSA-------YTELAVRSLHS 404 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~-------d~~~Av~~LH~ 404 (411)
.+|.+-..+|...+|..+++|..|+++++.+-++++||.++|+-+|.. ..+++++.|-+
T Consensus 2 ~~i~i~s~~m~~~~GFLa~vF~if~~~~vsVDlisTSEvsVS~tlD~~~~~~~~~~l~~l~~eL~~ 67 (75)
T cd04912 2 TLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred EEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 899984564665632899999999982995589980551899998488753206679999999995
No 125
>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.80 E-value=1.7e-05 Score=56.90 Aligned_cols=59 Identities=22% Similarity=0.406 Sum_probs=50.5
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 000127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++|.+- +|...+|+.+++|+.|+ +|||.||+|+.|++ +|+|.++++|.++++..|++..
T Consensus 2 siiavVG~~m~~~~Gva~~if~aL~--~inI~mIsqGaSe~----Nis~lV~~~d~~~al~~Lh~~f 62 (64)
T cd04917 2 ALVALIGNDISETAGVEKRIFDALE--DINVRMICYGASNH----NLCFLVKEEDKDEVVQRLHSRL 62 (64)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHH--CCCEEEEEECCCCC----EEEEEEEHHHHHHHHHHHHHHH
T ss_conf 1999926763137777999999863--67959996068744----4999996678999999999986
No 126
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=97.78 E-value=2.2e-05 Score=56.15 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=51.9
Q ss_pred CCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 2000127--75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 266 EAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 266 i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
+++|+.- +|. .||+++|.|..|+++||||.++.|+.++ ++++|.++++|++++..+|++.+
T Consensus 2 vaiVs~IG~~m~-~~gvlar~~~AL~~~gInv~a~~Q~~r~----vnvqFVV~~~d~~~Ai~aLH~al 64 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRN----VDVQFVVDRDDYDNAIKALHAAL 64 (66)
T ss_pred EEEEEEECCCCC-CCHHHHHHHHHHHHCCCCEEEEECCCCE----EEEEEEEEHHHHHHHHHHHHHHH
T ss_conf 689997157887-4427999999999889978988647850----36899982799999999999987
No 127
>PRK08841 aspartate kinase; Validated
Probab=97.69 E-value=3.7e-05 Score=54.61 Aligned_cols=66 Identities=12% Similarity=0.209 Sum_probs=55.5
Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 1234662000127750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 260 IAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 260 Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
+...+++++|++-| .+.+|+++++|+.|++++||+.||+|| | ++|+|.++++|.+++...|++.+.
T Consensus 312 i~~~~~va~VsvVG-~~~~Gva~~~f~aLa~~~InI~~is~S--E----inIS~vV~~~d~~kAv~aLH~~F~ 377 (392)
T PRK08841 312 IRNSEAVSLLTLVG-LEANGMVDHACNQLAQQGIDVHQCSTE--P----LSSMLVVDPANVDRAANILHKTYV 377 (392)
T ss_pred CCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHCCCCEEEEEEC--C----CEEEEEECHHHHHHHHHHHHHHHC
T ss_conf 21268934999988-998559999999999789987999803--5----789999849999999999998866
No 128
>KOG0456 consensus
Probab=97.61 E-value=3.9e-05 Score=54.48 Aligned_cols=68 Identities=31% Similarity=0.419 Sum_probs=46.7
Q ss_pred CCCCCCCCHHCCC-CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 1234662000127-75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 260 IAYTKDEAQISLR-RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 260 Is~~~~i~~Iti~-~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
+-..+..+.|++. +|.+..|++.+.|..|+++||||.||+|+.|+ ++||+.+++++.+++..+|+...
T Consensus 466 vdll~~~sIiSLiGnvq~ss~i~~rmF~~l~e~giNvqMISQGAsk----vNIS~ivne~ea~k~v~~lH~~~ 534 (559)
T KOG0456 466 VDLLKGRSIISLIGNVQNSSGILERMFCVLAENGINVQMISQGASK----VNISCIVNEKEAEKCVQALHKAF 534 (559)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCC----CEEEEEECHHHHHHHHHHHHHHH
T ss_conf 4464264287665455455688988999998648562641056552----10799977388899999999997
No 129
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase; InterPro: IPR010167 This entry represents a clade of amino-acid N-acetyltransferases, or N-acetylglutamate synthase, which is the product of the argA gene and the first enzyme in arginine biosynthesis. This enzyme displays more diversity between bacteria, fungi and mammals than other enzymes in arginine metabolism, and N-acetylglutamate itself can have different roles in different taxonomic groups: in prokaryotes, lower eukaryotes and plants it is the first intermediate in arginine biosynthesis, while in vertebrates it is an allosteric cofactor for the first enzyme in the urea cycle . In bacteria, arginine can regulate ornithine biosynthesis via a feedback inhibition mechanism . This enzyme may also act on aspartate.; GO: 0004042 amino-acid N-acetyltransferase activity, 0006526 arginine biosynthetic process, 0005737 cytoplasm.
Probab=97.59 E-value=0.0007 Score=46.00 Aligned_cols=257 Identities=20% Similarity=0.294 Sum_probs=152.9
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCC-------CHHHHHHHH-HHH
Q ss_conf 669996085845888999999999999996799889998068730489999999861489-------988999999-831
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSID-------NARERDVVI-STG 73 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~-------~~~~~d~i~-s~G 73 (411)
|+.|.=|||-.|... .+.+++.-|.-.-.-|-++|.|+.|.--+-.+|.. ++.++.. +..+++.+. +.|
T Consensus 18 KT~Vvgl~g~~v~~~-~l~~~v~Di~LLh~LGv~lVLvHGaRPq~~~~la~--~~~~p~Y~~G~RvTD~asLe~~~~aaG 94 (439)
T TIGR01890 18 KTFVVGLGGELVEDD-NLGNIVADIALLHSLGVRLVLVHGARPQIEERLAA--RGRTPHYHRGLRVTDEASLELVKQAAG 94 (439)
T ss_pred CEEEEECCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHH--CCCCCCCCCCEEECCHHHHHHHHHHHH
T ss_conf 669984284001444-42459999999975891899970885268999996--289787032257135656778999876
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC---------------CCCCCCCCCCHHHHHHHCCEEEEECCCC
Q ss_conf 2999999999998439986356733245512133552---------------0001236210033431068058603433
Q gi|254780873|r 74 EQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGM---------------ARICRVDEKKIVTHLKKKQVVVITGFQG 138 (411)
Q Consensus 74 E~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~---------------a~~~~~~~~~l~~~l~~~~v~v~~Gf~g 138 (411)
+.-+ .+-|.+ +.-+++.+..+.++.+ ..+||-- ..|..+|.+-|...|+++.|+..+= +|
T Consensus 95 ~lr~-~ieA~L--s~~~~~~pmaGsr~~v-vSGNfvtArPiGv~~GvDy~h~G~vRk~D~~~i~~~Ld~g~IVLL~P-LG 169 (439)
T TIGR01890 95 ELRL-AIEARL--SMSLSNTPMAGSRLSV-VSGNFVTARPIGVIEGVDYEHTGVVRKIDTEGIRRLLDAGSIVLLSP-LG 169 (439)
T ss_pred HHHH-HHHHHH--HHCCCCCCCCCCEEEE-EECCEEEECCCEEECCCCCEECCCEEHHHHHHHHHHHCCCCEEECCC-CC
T ss_conf 6888-888887--5212467888853135-62433320331010586620327451100888986520787675176-54
Q ss_pred CCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH-HCCCCC-----H-
Q ss_conf 355684244306862428999998847345565346144024584212344110567999999988-403110-----1-
Q gi|254780873|r 139 LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS-SLGAKV-----M- 211 (411)
Q Consensus 139 ~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa-~~Gakv-----l- 211 (411)
.+..|++=.|- +.-+||-.|..|+||++...|..|||+.+|=+ .+.+|+..|+..+. .+|... +
T Consensus 170 ~S~tG~~FnL~---~e~vAt~~A~~L~AdKL~~~t~~~Gi~d~~G~------l~~eL~pq~~~~~~~~l~~~~aPdde~~ 240 (439)
T TIGR01890 170 YSPTGEIFNLD---MEDVATSVAIELKADKLIYFTEEPGILDADGK------LVAELSPQEVESLVERLGEETAPDDELS 240 (439)
T ss_pred CCCCCHHCCCC---HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCH------HHHHCCHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 36640000440---68899999986255404540588872465652------4232487899999998505789733322
Q ss_pred -----HHHHHHHHHHCCCE-EEEECCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC--CCCC
Q ss_conf -----37887643313852-67611237777-------765435454542101222310111234662000127--7500
Q gi|254780873|r 212 -----QVRSVELAMLYKMC-LFVRSSFEDHG-------QQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRD 276 (411)
Q Consensus 212 -----hp~~~~~~~~~~ip-i~i~ntf~~~~-------~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~--~~~~ 276 (411)
.=+++--|++.|++ .+|-| |-.++ ...-.||.|..+. ...|+ .+.|
T Consensus 241 ~~~~~lL~~a~~A~~GGV~R~hlv~-ya~DGsLL~ELF~~~G~GT~v~~~~------------------~e~iR~At~~D 301 (439)
T TIGR01890 241 ADTARLLSAAVKACRGGVRRSHLVS-YAEDGSLLQELFTRDGIGTLVSKEA------------------FESIREATIDD 301 (439)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECC-CHHHHHHHHHHHHCCCCCHHHHHHH------------------HHHHHHHCCCC
T ss_conf 5589999999999867975144226-2322589999986189303788888------------------89875311244
Q ss_pred CCCCCCHHHHHHHHCCCCE
Q ss_conf 0484100014554128501
Q gi|254780873|r 277 HPGISASIFSPLAEAHINI 295 (411)
Q Consensus 277 ~~g~~a~If~~La~~~I~V 295 (411)
.+| +.++-++|++.||=|
T Consensus 302 vGG-i~~LI~PLEeqGiLv 319 (439)
T TIGR01890 302 VGG-ILELIRPLEEQGILV 319 (439)
T ss_pred CCH-HHHHCCCHHHCCEEC
T ss_conf 100-887435134557310
No 130
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.41 E-value=0.00061 Score=46.43 Aligned_cols=48 Identities=23% Similarity=0.380 Sum_probs=45.2
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHH
Q ss_conf 699996678667855799999999867982999970784899997088
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSA 393 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~ 393 (411)
.+|.+-..+|....|..+++|..++++++.+-||++||.++|+=+|..
T Consensus 2 t~i~i~S~rMl~a~GFLa~VF~if~~~~isVD~ItTSEVsVSlTlD~s 49 (78)
T cd04933 2 TMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPS 49 (78)
T ss_pred EEEEEECHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCC
T ss_conf 899983411677744599999999983995699982257999997584
No 131
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=97.41 E-value=0.00087 Score=45.38 Aligned_cols=58 Identities=21% Similarity=0.294 Sum_probs=48.7
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEEC-----HHHHHHHHHHHHH
Q ss_conf 999966786678557999999998679829999707848999970-----8899999999998
Q gi|254780873|r 347 KISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLID-----SAYTELAVRSLHS 404 (411)
Q Consensus 347 ~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~-----~~d~~~Av~~LH~ 404 (411)
.|.+--..|-..+|..+++|..|.++++.+-||++||.++|+-++ .++.+++++.|.+
T Consensus 3 vinI~Snrm~~ahGFLa~vF~if~~~~~sVDlIsTSEV~VSmti~~~~~~~~~l~~~~~eL~~ 65 (73)
T cd04934 3 VINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 999831501335178999999998749953899812379999983378755559999999985
No 132
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=97.34 E-value=0.0035 Score=41.28 Aligned_cols=117 Identities=24% Similarity=0.379 Sum_probs=84.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECC
Q ss_conf 50004841000145541285011123443222233310121230247766887898886059615897489169999667
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGI 353 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~ 353 (411)
+.++||-++.+.+.|.++|||+-..+-. +.+..--+...+++.+ .+..+|++ .++ .+. .-.+++-
T Consensus 10 lENk~GRL~~~~~~L~eagINiRA~tiA--dt~dFGIiRmvV~~~d--~A~~~Lee----~gF-~Vr------~~dVlaV 74 (142)
T COG4747 10 LENKPGRLASVANKLKEAGINIRAFTIA--DTGDFGIIRMVVDRPD--EAHSVLEE----AGF-TVR------ETDVLAV 74 (142)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEC--CCCCCCEEEEECCCHH--HHHHHHHH----CCC-EEE------EEEEEEE
T ss_conf 5078644999999999769865888730--3667536999708858--99999987----793-898------6248999
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEE---ECCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 866785579999999986798299997---0784899997088999999999987
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAIT---TSEIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~is---sSe~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
.|.+.||-.+++..+|.+++||+.-+- +-...--+++.-+|.+++.++|.++
T Consensus 75 EmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 75 EMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred EECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEEEHHHHHHHHHHHHHC
T ss_conf 8158887088999987414867201456530373379999845778899999975
No 133
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.00024 Score=49.11 Aligned_cols=70 Identities=20% Similarity=0.310 Sum_probs=57.9
Q ss_pred CHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHH--HHHHHHHHHHHHCCCCEEEEE
Q ss_conf 000127--7500048410001455412850111234432222333101212302477--668878988860596158974
Q gi|254780873|r 267 AQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLE--KALAVLSDNKENIGYDVIQHE 342 (411)
Q Consensus 267 ~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~--~~~~~L~~~~~~~~~~~I~~~ 342 (411)
+.|+++ .|....||..|++++|+++|||+++++++.. +++..+.++++. +...++++++..+..+.+++.
T Consensus 2 ~~I~I~K~lMN~EvGF~rKvL~IlE~~~IS~EHmPSGID------~~siiv~~~~l~~~~~~~ii~~I~~~l~pD~i~i~ 75 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGID------DISIIIRDNQLTDEKEQKILAEIKEELHPDEIEII 75 (76)
T ss_pred EEEEEEHHHHCHHHHHHHHHHHHHHHCCCCEEECCCCCC------EEEEEEEHHHCCCHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 299987877020464899999999983998645588866------08999886874705899999999976299779986
No 134
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.32 E-value=0.00064 Score=46.29 Aligned_cols=48 Identities=23% Similarity=0.407 Sum_probs=44.7
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHH
Q ss_conf 699996678667855799999999867982999970784899997088
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSA 393 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~ 393 (411)
.++++-..+|....|..+++|..+++++|.+-++++||.|+|+-+|..
T Consensus 2 tl~~i~s~~Ml~a~GFLa~VF~if~~h~iSVDlitTSEvsVslTlD~~ 49 (75)
T cd04935 2 RLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPD 49 (75)
T ss_pred EEEEECCHHHHHHCCHHHHHHHHHHHCCCCEEEEEEEEEEEEEEECCC
T ss_conf 899964764765626499999999984971789970157999997588
No 135
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0009 Score=45.28 Aligned_cols=59 Identities=24% Similarity=0.336 Sum_probs=49.3
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHH-------HHHHHHHHH
Q ss_conf 69999667866785579999999986798299997078489999708899-------999999998
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYT-------ELAVRSLHS 404 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~-------~~Av~~LH~ 404 (411)
++|++-..+|....|..+++|..++++++.+-+|++||.++|+=+|.... +.+++.|.+
T Consensus 2 t~i~i~s~~m~~~~GFLa~vF~if~~h~isVDlitTSEvsVslTlD~~~~~~~~~l~~~ll~eL~~ 67 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSDQLLTQALLKELSQ 67 (75)
T ss_pred EEEEEECCCHHHHCCHHHHHHHHHHHCCCCEEEEECCEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 599994500666536799999999981995489970426999997588753036679999999996
No 136
>PRK05925 aspartate kinase; Provisional
Probab=97.19 E-value=0.00031 Score=48.45 Aligned_cols=109 Identities=13% Similarity=0.023 Sum_probs=65.2
Q ss_pred HHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHH
Q ss_conf 00145541285011123443222233310121230247766887898886059615897489169999667866785579
Q gi|254780873|r 283 SIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 (411)
Q Consensus 283 ~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gia 362 (411)
+-++.+.+++|++..-++-.++... +-|. . ...+ ..+...+..+...++.+++++-+ +|.... ..
T Consensus 251 rtv~pa~~~~Ipi~i~nt~~p~~~G-T~I~-~-~~~~----------~~~~~~Vk~ia~~~~~~i~~i~~-~~~~~~-~~ 315 (440)
T PRK05925 251 PMLKPCVRAGIPIFVTSTFDVTKGG-TWIY-A-SDKE----------VSYEPRIKALSLKQNQALWSVDY-NSLGLV-RL 315 (440)
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCC-EEEE-E-CCCC----------CCCCCCEEEEEECCCCEEEEEEC-CCCCCH-HH
T ss_conf 9999999839958996789999995-3898-5-5766----------55688779999718706999965-788506-69
Q ss_pred HHHHHHHHHCCCEEEEEEECCCEEEEEECHHHH-HHHHHHHHHHC
Q ss_conf 999999986798299997078489999708899-99999999870
Q gi|254780873|r 363 SAFFLCLAEKGINIKAITTSEIKISVLIDSAYT-ELAVRSLHSCY 406 (411)
Q Consensus 363 akif~aL~~~~InI~~issSe~~IS~VV~~~d~-~~Av~~LH~~F 406 (411)
+|+|..|++++|++.++++++.++++.+++++. ++.++.+++++
T Consensus 316 ~~vf~~l~~~~i~~~~i~s~~~~vs~ti~~~~~~~~~~~~l~~~l 360 (440)
T PRK05925 316 EKVLGILRSLGIVPGLVMAQNSGVYFTTDDDDISEEYIQHLTDAL 360 (440)
T ss_pred HHHHHHHHHCCCCEEEEEECCCEEEEEECHHHHHHHHHHHHHHHH
T ss_conf 999999997599338997247539999770365699999999998
No 137
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=97.05 E-value=0.00035 Score=48.03 Aligned_cols=49 Identities=24% Similarity=0.306 Sum_probs=36.4
Q ss_pred HCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHH
Q ss_conf 0127--750004841000145541285011123443222233310121230247766
Q gi|254780873|r 269 ISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKA 323 (411)
Q Consensus 269 Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~ 323 (411)
|++. .|.+..||.+++|++|+++++++|+|+++. +++|.+++....++.
T Consensus 3 i~i~~~~M~~~~GF~~~v~~il~~~~isv~~i~t~~------~svs~~l~~~~~~~~ 53 (62)
T cd04890 3 IEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSE------NSVTLYLDDSLLPKK 53 (62)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCC------CEEEEEECCCCCHHH
T ss_conf 998503101326558999999998199879870664------379999821012057
No 138
>LOAD_ACT consensus
Probab=97.00 E-value=0.00083 Score=45.52 Aligned_cols=62 Identities=32% Similarity=0.364 Sum_probs=48.0
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHC
Q ss_conf 75000484100014554128501112344322223331012123024776688789888605
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENI 334 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~ 334 (411)
.+.++||.++++++.|++.|+||..|.|+.++......+.|+++..+......++.++.+..
T Consensus 5 ~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~ 66 (76)
T LOAD_ACT 5 ELEDRPGVLARVLGALAERGINIVSIEQSTSEKGGLARIVFVVDVEDDEDLEKILKELLLLE 66 (76)
T ss_pred EEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHHHHCCC
T ss_conf 99577877999999998649894206703568886688999995499799999999984578
No 139
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=96.73 E-value=0.019 Score=36.30 Aligned_cols=142 Identities=13% Similarity=0.144 Sum_probs=82.7
Q ss_pred CCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC--CHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 46620001277500048410001455412850111234432222333101212--3024776688789888605961589
Q gi|254780873|r 263 TKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT--PSSSLEKALAVLSDNKENIGYDVIQ 340 (411)
Q Consensus 263 ~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i--~~~d~~~~~~~L~~~~~~~~~~~I~ 340 (411)
.++...+++.| .|.||+.+++...+.++|-||.-- ....-+....+...+ +.+...++...|..+..+++...+.
T Consensus 5 ~~~~lvit~~G-~DrpGiv~~v~~~~~~~g~ni~dS--rm~~lg~~f~~imlvSg~~~ai~~lE~~Lp~~~~el~L~~~~ 81 (183)
T PRK11589 5 SQHYLVITALG-ADRPGIVNTITRHVSSCGCNIEDS--RLAMLGEEFTFIMLLSGSWNAITLIESTLPLKGAELDLLIVM 81 (183)
T ss_pred CCCEEEEEEEC-CCCCHHHHHHHHHHHHCCCCCHHH--HHHHHCCEEEEEEEECCCHHHHHHHHHHCCHHCCCCCEEEEE
T ss_conf 55279999970-898738999999999769987266--688745706999994088758899986160220557749999
Q ss_pred E---------ECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE-----C-----CCEEEEEE--C----HHHH
Q ss_conf 7---------4891699996678667855799999999867982999970-----7-----84899997--0----8899
Q gi|254780873|r 341 H---------EDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT-----S-----EIKISVLI--D----SAYT 395 (411)
Q Consensus 341 ~---------~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss-----S-----e~~IS~VV--~----~~d~ 395 (411)
. ......|+++| .+.||+..++.+.|++.+|||....+ . ...+.+.+ + -.+.
T Consensus 82 ~rt~~~~~~~~~~~~~v~v~g---~D~PGIV~~vt~~la~~~InI~~L~T~t~~A~~~~~~~f~~~~t~~iPa~~~i~~L 158 (183)
T PRK11589 82 KRTTARPRPAMPATVWVQVEV---ADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERAAQLHIQITAHSPASQDAANI 158 (183)
T ss_pred ECCCCCCCCCCCCEEEEEEEE---CCCCCHHHHHHHHHHHCCCCHHHHEEEEECCCCCCCCEEEEEEEECCCCCCCHHHH
T ss_conf 625666676778159999997---89898899999999986998765222114499999736999999807998999999
Q ss_pred HHHHHHHHHHCCCCC
Q ss_conf 999999998709777
Q gi|254780873|r 396 ELAVRSLHSCYGLDV 410 (411)
Q Consensus 396 ~~Av~~LH~~F~ld~ 410 (411)
++.+..|-++..+|.
T Consensus 159 ~~~f~~lc~eLnld~ 173 (183)
T PRK11589 159 EQAFKALCTELNAQG 173 (183)
T ss_pred HHHHHHHHHHHCCEE
T ss_conf 999999999829838
No 140
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=96.72 E-value=0.0011 Score=44.62 Aligned_cols=57 Identities=30% Similarity=0.496 Sum_probs=42.2
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 001277500048410001455412850111234432222333101212302477668878988
Q gi|254780873|r 268 QISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 268 ~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
+|++..-.+....-.++|+.||+++||||+|. .++. .+.||+++++.+++..+|+++
T Consensus 3 QikV~ak~~~~~lq~~vF~~lA~~~ISvDfIN--I~P~----~~vfTV~~~~~~ka~~iL~~l 59 (67)
T cd04914 3 QIKVKAKDNENDLQQRVFKALANAGISVDLIN--VSPE----EVIFTVDGEVAEKAVDILEKM 59 (67)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHCCCCEEEEE--ECCC----CEEEEECHHHHHHHHHHHHHC
T ss_conf 49996377633599999999997598578998--6677----479980778899999999986
No 141
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=96.72 E-value=0.0059 Score=39.77 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=50.1
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 9999667866785579999999986798299997078489999708899999999998
Q gi|254780873|r 347 KISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHS 404 (411)
Q Consensus 347 ~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~ 404 (411)
.|.+-...|...+|...|+|+.|.++++.+..+++|+.+||++++.+..++.++.+=+
T Consensus 2 ~i~i~~~~M~~~~GF~~~v~~il~~~~isv~~i~t~~~svs~~l~~~~~~~~l~~l~~ 59 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLLPKKLKRLLA 59 (62)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 5998503101326558999999998199879870664379999821012057999999
No 142
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=96.63 E-value=0.0051 Score=40.22 Aligned_cols=38 Identities=37% Similarity=0.390 Sum_probs=22.6
Q ss_pred CHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCC
Q ss_conf 000127750004841000145541285011123443222
Q gi|254780873|r 267 AQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSED 305 (411)
Q Consensus 267 ~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~ 305 (411)
+.||+.| .|+||+.+.+++.|+++++|+.=|+|..-..
T Consensus 4 avITV~G-kDr~GIva~is~vLAe~~vNIldisQtvm~~ 41 (90)
T COG3830 4 AVITVIG-KDRVGIVAAVSRVLAEHGVNILDISQTVMDG 41 (90)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCCEEEHHHHHHHH
T ss_conf 8999975-8877334999999997698188777999962
No 143
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.53 E-value=0.0053 Score=40.08 Aligned_cols=61 Identities=21% Similarity=0.330 Sum_probs=27.5
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC----CCEEEEEECH-------HHHHHHHHHHHHHCCCC
Q ss_conf 6999966786678557999999998679829999707----8489999708-------89999999999870977
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTS----EIKISVLIDS-------AYTELAVRSLHSCYGLD 409 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issS----e~~IS~VV~~-------~d~~~Av~~LH~~F~ld 409 (411)
|+|+++| ++.||+.+++...|+++|+||.-++++ .-++.++|+- +..++++..+-++++++
T Consensus 2 aVITviG---~Dr~GIVa~vt~~Lae~~iNI~DisQti~~g~F~M~m~vd~~~~~~~~~~l~~~L~~~~~~lgl~ 73 (88)
T cd04872 2 AVITVVG---KDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDISESNLDFAELQEELEELGKELGVK 73 (88)
T ss_pred EEEEEEC---CCCCCHHHHHHHHHHHCCCCEEEEEEEEECCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCCCE
T ss_conf 6999977---99887899999999986998895350267577899999994576799999999999999872988
No 144
>PRK00194 hypothetical protein; Validated
Probab=96.42 E-value=0.0061 Score=39.71 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=16.3
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 69999667866785579999999986798299997
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT 380 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~is 380 (411)
|+|+++| ++.||+.+++.+.|+++++||.-++
T Consensus 4 avITV~G---~DrpGIVa~Vt~~La~~~~NI~Dis 35 (90)
T PRK00194 4 AIITVIG---KDRVGIVAGVSTVLAELNVNILDIS 35 (90)
T ss_pred EEEEEEC---CCCCCHHHHHHHHHHHCCCCEEECC
T ss_conf 9999987---9988789999999998699989551
No 145
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.029 Score=35.12 Aligned_cols=69 Identities=25% Similarity=0.275 Sum_probs=55.8
Q ss_pred CCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 6158974891699996678667855799999999867982999970784899997088999999999987
Q gi|254780873|r 336 YDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 336 ~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
.+.|+.+.+.+...+=|--==+.+|+.+++.++|++++|.|..+|+=... .++|.++|.++|+++|.++
T Consensus 54 p~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydtD-hiLVr~~dLekAv~~L~ea 122 (128)
T COG3603 54 PDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDTD-HILVREEDLEKAVKALEEA 122 (128)
T ss_pred CCCEEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC-EEEEEHHHHHHHHHHHHHC
T ss_conf 96157548807999834655783041466544576579527999712574-6998345599999999970
No 146
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=96.19 E-value=0.02 Score=36.29 Aligned_cols=50 Identities=32% Similarity=0.488 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEECC-------CEEEEEECHHHHHHHHHHHHHH
Q ss_conf 6785579999999986798299997078-------4899997088999999999987
Q gi|254780873|r 356 QSYAGVASAFFLCLAEKGINIKAITTSE-------IKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 356 ~~~~Giaakif~aL~~~~InI~~issSe-------~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
.+.||+.++++++|+++||||.++.++. .-+.++.+..+...+++.|++.
T Consensus 8 ~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (66)
T pfam01842 8 PDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKL 64 (66)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 798837999999998779994789974667876259999966754599999999874
No 147
>pfam01842 ACT ACT domain. This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5.
Probab=96.08 E-value=0.0059 Score=39.79 Aligned_cols=57 Identities=37% Similarity=0.492 Sum_probs=40.4
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCC-CCCCCEEECCHHHHHHHHHHHHH
Q ss_conf 7500048410001455412850111234432222-33310121230247766887898
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDG-QYVDITFTTPSSSLEKALAVLSD 329 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~-~~~~Isf~i~~~d~~~~~~~L~~ 329 (411)
.+++.||+++++|+.|+++|+||.++.|..+... ....+.+..+..+.+.+...|++
T Consensus 6 ~~~DrpG~l~~v~~~la~~ginI~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 63 (66)
T pfam01842 6 GVPDRPGLLARVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKK 63 (66)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 7079883799999999877999478997466787625999996675459999999987
No 148
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=96.00 E-value=0.098 Score=31.56 Aligned_cols=126 Identities=14% Similarity=0.155 Sum_probs=86.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECC--HHHHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf 5000484100014554128501112344322223331012123--02477668878988860596158----97489169
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTP--SSSLEKALAVLSDNKENIGYDVI----QHEDNLVK 347 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~--~~d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~ 347 (411)
+.+.||.++|+-..|++.|.|++-++-+.++....-.++++++ +..++++.+.|+++..-..+..+ .+...+++
T Consensus 9 veN~~GvL~RisglFsrRg~NI~SL~v~~te~~~iSR~Tiv~~g~~~~i~QI~kQL~KLidVi~V~dlt~~~~v~REl~L 88 (161)
T PRK11895 9 VENEPGVLSRVAGLFSRRGYNIESLTVAPTEDPGLSRITIVTSGDERVLEQITKQLNKLIDVLKVVDLTEEAHVERELAL 88 (161)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCEEEEEEEE
T ss_conf 97786799999999850686546666502479981599999968999999999999632140346645885404758899
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 999667866785579999999986798299997078489999708899999999998
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHS 404 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~ 404 (411)
+-+-.. +.--+.+++.....+-++.-.+....-+.+.=+.++.+..++.|..
T Consensus 89 iKv~~~-----~~~r~ei~~i~~~f~a~ivd~~~~~~iiE~tG~~~kid~~i~~l~~ 140 (161)
T PRK11895 89 VKVRAT-----GETRAEILRLADIFRAKIVDVTPESLTIELTGTPDKIDAFIDLLRP 140 (161)
T ss_pred EEEECC-----HHHHHHHHHHHHHHCCEEEECCCCEEEEEEECCHHHHHHHHHHHHH
T ss_conf 999868-----5329999999987077689716988999992998999999997515
No 149
>LOAD_ACT consensus
Probab=95.73 E-value=0.02 Score=36.29 Aligned_cols=51 Identities=29% Similarity=0.391 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEEECC------CEEEEEECHHHHHHHHHHHHH
Q ss_conf 866785579999999986798299997078------489999708899999999998
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAITTSE------IKISVLIDSAYTELAVRSLHS 404 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~issSe------~~IS~VV~~~d~~~Av~~LH~ 404 (411)
.+.+.||++++++++|+++|+||..+.+++ ..+.++++..+.+...+.+++
T Consensus 5 ~~~d~pGvLa~i~~~la~~~~nI~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~ 61 (76)
T LOAD_ACT 5 ELEDRPGVLARVLGALAERGINIVSIEQSTSEKGGLARIVFVVDVEDDEDLEKILKE 61 (76)
T ss_pred EEECCCCHHHHHHHHHHHCCCCHHEEEECCCCCCCEEEEEEEEECCCHHHHHHHHHH
T ss_conf 995778779999999986498942067035688866889999954997999999999
No 150
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.71 E-value=0.017 Score=36.70 Aligned_cols=66 Identities=21% Similarity=0.282 Sum_probs=49.8
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEE--CCH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 00127750004841000145541285011123443222233310121--230--2477668878988860596
Q gi|254780873|r 268 QISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFT--TPS--SSLEKALAVLSDNKENIGY 336 (411)
Q Consensus 268 ~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~--i~~--~d~~~~~~~L~~~~~~~~~ 336 (411)
.||+.| +|+||..+++.+.|+++|+||.-++|..-..- ..+.+. +++ .++..+.+.|.++.++++.
T Consensus 3 VITviG-~Dr~GIVa~vt~~Lae~~iNI~DisQti~~g~--F~M~m~vd~~~~~~~~~~l~~~L~~~~~~lgl 72 (88)
T cd04872 3 VITVVG-KDRVGIVAGVSTKLAELNVNILDISQTIMDGY--FTMIMIVDISESNLDFAELQEELEELGKELGV 72 (88)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCCCEEEEEEEEECCE--EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 999977-99887899999999986998895350267577--89999999457679999999999999987298
No 151
>PRK00194 hypothetical protein; Validated
Probab=95.64 E-value=0.02 Score=36.21 Aligned_cols=67 Identities=22% Similarity=0.279 Sum_probs=50.2
Q ss_pred CHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEE--CCH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 000127750004841000145541285011123443222233310121--230--2477668878988860596
Q gi|254780873|r 267 AQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFT--TPS--SSLEKALAVLSDNKENIGY 336 (411)
Q Consensus 267 ~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~--i~~--~d~~~~~~~L~~~~~~~~~ 336 (411)
+.||+.| +|+||+.+++.+.|+++++||.=|+|..-... ..+.+. +++ .+++.+.+.|.++.++++.
T Consensus 4 avITV~G-~DrpGIVa~Vt~~La~~~~NI~DisQti~~g~--F~M~m~vd~~~~~~~~~~l~~~L~~~~~~lgv 74 (90)
T PRK00194 4 AIITVIG-KDRVGIVAGVSTVLAELNVNILDISQTIMDGY--FTMIMLVDISKSDKDFAALQEELEELGKELGV 74 (90)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHCCCCEEECCCCEECCE--EEEEEEEEECCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 9999987-99887899999999986999895511210574--68999998367679999999999999987597
No 152
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.56 E-value=0.048 Score=33.64 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=14.5
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 999667866785579999999986798299997
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT 380 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~is 380 (411)
|++.| ++.||+.+++++.|+++++||.-|+
T Consensus 2 Itv~G---~DrpGi~a~v~~~La~~~~~IlDI~ 31 (75)
T cd04870 2 ITVTG---PDRPGLTSALTEVLAAHGVRILDVG 31 (75)
T ss_pred EEEEC---CCCCCHHHHHHHHHHHCCCEEEEEE
T ss_conf 89977---9988789999999987799089625
No 153
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.26 E-value=0.016 Score=36.79 Aligned_cols=60 Identities=28% Similarity=0.412 Sum_probs=41.6
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 750004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
.+.|.||.+++|.++|++++||++-+.|..........+.++-+...-.....+++++.+
T Consensus 6 ~v~D~pGVla~It~i~a~~~ISI~sv~Q~~~~~~~~a~iviiTh~~~e~~i~~al~~i~~ 65 (79)
T cd04881 6 TVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEA 65 (79)
T ss_pred EECCCCCHHHHHHHHHHHCCCCHHHEEECCCCCCCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 807878579999999997498876515157678996558999532509999999999974
No 154
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=95.23 E-value=0.2 Score=29.51 Aligned_cols=125 Identities=16% Similarity=0.125 Sum_probs=81.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH--HHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf 500048410001455412850111234432222333101212302--477668878988860596158----97489169
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS--SLEKALAVLSDNKENIGYDVI----QHEDNLVK 347 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~--d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~ 347 (411)
+.+.||.++|+-..|++.|.||+-++-+.++....-.++++++.+ .++++.+.|+++..-..+..+ .+...+++
T Consensus 9 VeN~pGvL~RV~glFsrRgyNIeSL~V~~te~~~iSR~Tiv~~gd~~~ieQI~kQL~KLidVi~V~dlt~~~~v~REl~L 88 (172)
T CHL00100 9 VEDEAGVLTRIAGLFARRGFNIESLAVGPAEQIGISRITMVVPGDNRTIEQLTKQLYKLVNILKVQDITNIPSVERELML 88 (172)
T ss_pred EECCCCHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHEEEE
T ss_conf 97786799999999851786723699721489981599999968999999999999558270264306784456435189
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHH
Q ss_conf 99966786678557999999998679829999707848999970889999999999
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH 403 (411)
+-+--. +.--+.+++.....+-++.-.+.+..-+.+.=+.+..+..++.|.
T Consensus 89 iKV~~~-----~~~r~ei~~i~~~f~akIvdv~~~s~iiE~tG~~~kida~i~~L~ 139 (172)
T CHL00100 89 IKINSN-----SQNRSEILDIVQIFRAKVVDLSEELLILEVTGDPGKIVAIEQLLT 139 (172)
T ss_pred EEEECC-----CCCHHHHHHHHHHCCCEEEEECCCEEEEEEECCHHHHHHHHHHHH
T ss_conf 999658-----314899999999729799990699899999389899999999750
No 155
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.19 E-value=0.036 Score=34.54 Aligned_cols=67 Identities=24% Similarity=0.287 Sum_probs=47.6
Q ss_pred HCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH-HHHHHHHHHHHHHHHCCC
Q ss_conf 01277500048410001455412850111234432222333101212302-477668878988860596
Q gi|254780873|r 269 ISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS-SLEKALAVLSDNKENIGY 336 (411)
Q Consensus 269 Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~-d~~~~~~~L~~~~~~~~~ 336 (411)
|++.| +|+||+.+++++.|++++++|-=|.|..-.......+-..+|++ +...+.+.|...-++.+.
T Consensus 2 Itv~G-~DrpGi~a~v~~~La~~~~~IlDI~Q~vi~~~l~l~~lv~ip~~~~~~~l~k~L~~~~~~lGv 69 (75)
T cd04870 2 ITVTG-PDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFKAHELGL 69 (75)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCEEEEEEHHHCCCEEEEEEEEEECCCCCHHHHHHHHHHHHHHCCC
T ss_conf 89977-998878999999998779908962555064757799999807853468999999999998596
No 156
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.10 E-value=0.053 Score=33.38 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=37.1
Q ss_pred ECCCCCCCCCHHHHHHHHHHHCCCEEE-EEEE-C--CCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 667866785579999999986798299-9970-7--84899997088999999999987
Q gi|254780873|r 351 IGIGMQSYAGVASAFFLCLAEKGINIK-AITT-S--EIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 351 VG~gm~~~~Giaakif~aL~~~~InI~-~iss-S--e~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
++-.|.+.||-.+++...|+++||||+ |.+- + +-+=.++..-+|.++|++.|.+.
T Consensus 2 iaVev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~r~~d~e~a~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQER 60 (65)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCHHHHHHHHHHC
T ss_conf 89994798871999999998879887999999437897689999819999999999986
No 157
>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC). This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=95.09 E-value=0.012 Score=37.77 Aligned_cols=53 Identities=11% Similarity=0.167 Sum_probs=42.8
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHH
Q ss_conf 75000484100014554128501112344322223331012123024776688789888
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNK 331 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~ 331 (411)
++..-.+.++..|+.|+++ +|.||+|+.++ ++++|++++++.+++.+.|+.+.
T Consensus 9 ~iR~~L~~l~~~f~~f~~~--~V~liSqaAnD----lNlTfViDe~~a~~l~~~LH~~l 61 (63)
T cd04920 9 GIRSLLHKLGPALEVFGKK--PVHLVSQAAND----LNLTFVVDEDQADGLCARLHFQL 61 (63)
T ss_pred HHHHHHHHHHHHHHHHCCC--CEEEHHHHCCC----CCEEEEECHHHHHHHHHHHHHHH
T ss_conf 4899899871899997137--55522110344----55599973565699999999996
No 158
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=94.76 E-value=0.048 Score=33.63 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHCCCEEEEEEECC------CEEEEEECHH-HHHHHHHHH
Q ss_conf 85579999999986798299997078------4899997088-999999999
Q gi|254780873|r 358 YAGVASAFFLCLAEKGINIKAITTSE------IKISVLIDSA-YTELAVRSL 402 (411)
Q Consensus 358 ~~Giaakif~aL~~~~InI~~issSe------~~IS~VV~~~-d~~~Av~~L 402 (411)
.||+.++++.+|+++++||..+.++. ..+++.++.. +.+++++.|
T Consensus 8 ~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 59 (60)
T cd02116 8 RPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred CCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCCHHHHHHHH
T ss_conf 8866999999999869895306840368897178999953777399998854
No 159
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=94.69 E-value=0.026 Score=35.44 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=46.1
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC----CCEEEEEECHHHHHHHHHHHHHH
Q ss_conf 916999966786678557999999998679829999707----84899997088999999999987
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTS----EIKISVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issS----e~~IS~VV~~~d~~~Av~~LH~~ 405 (411)
..++|+++| ++.||+.+.+|.+|+++|+||+-++++ -.++-++|+-.+......+|.++
T Consensus 2 ~~avITV~G---kDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~ 64 (90)
T COG3830 2 MRAVITVIG---KDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDE 64 (90)
T ss_pred CEEEEEEEC---CCCCCHHHHHHHHHHHCCCCEEEHHHHHHHHHCEEEEEECCCHHHCCHHHHHHH
T ss_conf 428999975---887733499999999769818877799996231166577277676129999999
No 160
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and
Probab=94.42 E-value=0.18 Score=29.75 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHH
Q ss_conf 5579999999986798299997078489999708899999999998
Q gi|254780873|r 359 AGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHS 404 (411)
Q Consensus 359 ~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~ 404 (411)
-....++|.+|++++|.+-.|+-+...+.|-|++++.++|.+.|.+
T Consensus 13 ~~lq~~vF~~lA~~~ISvDfINI~P~~~vfTV~~~~~~ka~~iL~~ 58 (67)
T cd04914 13 NDLQQRVFKALANAGISVDLINVSPEEVIFTVDGEVAEKAVDILEK 58 (67)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECHHHHHHHHHHHHH
T ss_conf 3599999999997598578998667747998077889999999998
No 161
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=94.15 E-value=0.15 Score=30.38 Aligned_cols=47 Identities=32% Similarity=0.381 Sum_probs=34.1
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEEEC----CCE-EEEEECHHHHHHHHHHH
Q ss_conf 86678557999999998679829999707----848-99997088999999999
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAITTS----EIK-ISVLIDSAYTELAVRSL 402 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~issS----e~~-IS~VV~~~d~~~Av~~L 402 (411)
.+.+.||..+++...|+++||||..++-. +.. +-++|++ .++|.+.|
T Consensus 4 f~enrpG~L~~v~~~L~~~~InI~alsi~dt~~~~GilRliv~~--p~~A~~~L 55 (56)
T cd04889 4 FVENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSD--PERAKEVL 55 (56)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECC--HHHHHHHH
T ss_conf 82389851999999999879987997620256773489999789--89999973
No 162
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.97 E-value=0.062 Score=32.90 Aligned_cols=66 Identities=21% Similarity=0.381 Sum_probs=44.9
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHH-HHHHHHHHHHHCCCCEE
Q ss_conf 75000484100014554128501112344322223331012123024776-68878988860596158
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEK-ALAVLSDNKENIGYDVI 339 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~-~~~~L~~~~~~~~~~~I 339 (411)
.+.+.||.+++++..+++++.||--|-|+.+-++. -+++++++-.+... ..+.++++++--++..+
T Consensus 6 ~l~d~~G~LS~vL~~ia~~~~NILTInQsIPi~g~-A~vtiS~d~s~~~~~i~~ll~~l~~i~gV~~v 72 (76)
T cd04888 6 LLEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGR-ANVTISIDTSTMNGDIDELLEELREIDGVEKV 72 (76)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEEEEEEECCCCCCHHHHHHHHHCCCCEEEE
T ss_conf 98288753999999999769839996478876888-99999999047766899999998707992799
No 163
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=93.92 E-value=0.19 Score=29.69 Aligned_cols=53 Identities=30% Similarity=0.476 Sum_probs=38.6
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEE---ECCCEE-EEEECHHHHHHHHHHHHHH
Q ss_conf 999667866785579999999986798299997---078489-9997088999999999987
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT---TSEIKI-SVLIDSAYTELAVRSLHSC 405 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~is---sSe~~I-S~VV~~~d~~~Av~~LH~~ 405 (411)
+|+. +.+.||-.+++..+|+++||||++.+ +++..| -++|++ .++|.+.|.++
T Consensus 4 lSVF---lENk~GrL~~v~~~L~~~~InI~AlsiaDt~dfgilRlivdd--p~~A~~~L~~~ 60 (66)
T cd04908 4 LSVF---LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEE---EECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECC--HHHHHHHHHHC
T ss_conf 8999---617964599999999878997899872136686589999489--89999999987
No 164
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=93.84 E-value=0.47 Score=26.99 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=70.5
Q ss_pred CHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC-CH------HH---HHHHHHHHHHHHHH---
Q ss_conf 0001277500048410001455412850111234432222333101212-30------24---77668878988860---
Q gi|254780873|r 267 AQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT-PS------SS---LEKALAVLSDNKEN--- 333 (411)
Q Consensus 267 ~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i-~~------~d---~~~~~~~L~~~~~~--- 333 (411)
+.|.+. .++.||..+++...|+..|+||-----.++.++..++. |.+ +. .+ .+++...|.+....
T Consensus 705 t~i~V~-~~D~~gLFa~i~g~l~~~~lnI~~A~I~t~~dg~~lD~-f~V~d~~~~~~~~~~~r~~~i~~~l~~~l~~~~~ 782 (894)
T PRK00275 705 TQIFIY-APDQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDT-YIVLDADGEPIGNNPARIEQIREGLTEALRNPDD 782 (894)
T ss_pred EEEEEE-ECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCEEEEE-EEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 699999-25887659999999997898268989887379808999-9996688886657799999999999998668410
Q ss_pred ---------------CC-CCEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCEE--EEE
Q ss_conf ---------------59-6158974----891699996678667855799999999867982999--97078489--999
Q gi|254780873|r 334 ---------------IG-YDVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIKI--SVL 389 (411)
Q Consensus 334 ---------------~~-~~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~I--S~V 389 (411)
+. .-.|.+. ++.++|.|.+ .+.||..+++..+|.+.|++|.+ |+|-.-.+ .|.
T Consensus 783 ~~~~~~rr~~r~~k~f~v~~~V~idn~~s~~~TvlEV~a---~DRpGLL~~I~~~l~~~~l~I~~AkI~T~Gerv~DvFy 859 (894)
T PRK00275 783 YPTIIQRRVPRQLKHFAFPTQVTISNDAQRPVTVLEIIA---PDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFF 859 (894)
T ss_pred CHHHHHHCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEE
T ss_conf 005553005643367999987998068988848999995---88076999999999988987988896354760899999
Q ss_pred ECH
Q ss_conf 708
Q gi|254780873|r 390 IDS 392 (411)
Q Consensus 390 V~~ 392 (411)
|.+
T Consensus 860 Vtd 862 (894)
T PRK00275 860 ITD 862 (894)
T ss_pred EEC
T ss_conf 967
No 165
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=93.57 E-value=0.04 Score=34.18 Aligned_cols=51 Identities=45% Similarity=0.549 Sum_probs=39.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH-HHHHHHH
Q ss_conf 00048410001455412850111234432222333101212302-4776688
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS-SLEKALA 325 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~-d~~~~~~ 325 (411)
.+.||.++++++.|+++++||..+.|+.........+.|.++.. +.+++..
T Consensus 6 ~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 57 (60)
T cd02116 6 PDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLE 57 (60)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHEEEEEECCCCCCEEEEEEECCCCCHHHHHH
T ss_conf 9988669999999998698953068403688971789999537773999988
No 166
>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase
Probab=93.42 E-value=0.12 Score=30.88 Aligned_cols=61 Identities=18% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 75000484100014554128501112344322223331012123024776688789888605961589
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQ 340 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~ 340 (411)
.|.|..|+..+|++.|.++++++. +.....++|+.+++. .++.+.++.+++.++++-..|.
T Consensus 10 dMVG~~gyD~~Il~~l~r~~v~iV------sK~~NANTIThYl~~-slk~~~rv~~~le~~yP~AeI~ 70 (71)
T cd04910 10 DMVGEVGYDLEILELLQRFKVSII------AKDTNANTITHYLAG-SLKTIKRLTEDLENRFPNAEIT 70 (71)
T ss_pred CCCCCCCCCHHHHHHHHHCCCEEE------ECCCCCCEEEEEECC-CHHHHHHHHHHHHHHCCCCEEC
T ss_conf 327886638999999998383588------504676438988358-7889999999999878888512
No 167
>KOG2436 consensus
Probab=93.16 E-value=0.74 Score=25.66 Aligned_cols=183 Identities=19% Similarity=0.190 Sum_probs=95.6
Q ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCC--C----CHHHHHHH---HHH
Q ss_conf 66999608584588899999999999999679988999806873048999999986148--9----98899999---983
Q gi|254780873|r 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI--D----NARERDVV---IST 72 (411)
Q Consensus 2 ~~iV~KfGGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~--~----~~~~~d~i---~s~ 72 (411)
+.+|+|=|++- .......++.-+.-....|..+|||...-- .-|+++.- +.+... + +..+.+.+ .-+
T Consensus 96 ~fvV~~~g~~~--~t~~~~sl~s~lafl~h~gl~pIvv~g~~~-qin~~l~~-~~ie~~y~~~~RvTda~t~q~~~~~~~ 171 (520)
T KOG2436 96 KFVVIKSGEAI--STSLLHSLASDLAFLHHVGLRPIVVPGTQP-QINRLLAE-RGIEPEYVDGYRVTDAHTLQAAKESVS 171 (520)
T ss_pred EEEEEECCCCC--CCCHHHHHHHHHHHHHCCCCEEEEECCCCH-HHHHHHHH-CCCCCCCCCCEECCCHHHHHHHHHCCH
T ss_conf 07999435435--563588998777887507736888438627-77789997-288830036310261888877653130
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCC-----C-----CCCCCCCCC-CCCCCCCCCCHHHHHHHCCEEEEECCCCCCC
Q ss_conf 1299999999999843998635673324-----5-----512133552-0001236210033431068058603433355
Q gi|254780873|r 73 GEQVSSGLMVLALQSLGIQAISLQGWQI-----P-----IMTDSLHGM-ARICRVDEKKIVTHLKKKQVVVITGFQGLSH 141 (411)
Q Consensus 73 GE~~s~~l~a~~l~~~G~~a~~l~~~~~-----~-----i~t~~~~~~-a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~ 141 (411)
||.--. +-..|++.|-.++....... + ...-..|+. ..+-.++.+++...++.+-+|+.+- .|.+.
T Consensus 172 ~E~n~~--lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~s-la~Ta 248 (520)
T KOG2436 172 LEANLN--LVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRS-LAATA 248 (520)
T ss_pred HHHHHH--HHHHHHHHHCEECCCCCCCCCCCEEECCCCCCCCCCEEEEECCCCEECHHHHHHHHHCCCCHHEHH-HCCCC
T ss_conf 021567--999999754010331256644304423523455400022003300311524235652798221110-11367
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCC-CCCCEECCCCHHHHH
Q ss_conf 684244306862428999998847345565346144024584212-344110567999999
Q gi|254780873|r 142 DNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE-PKAHLMKKISFEEML 201 (411)
Q Consensus 142 ~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v-~~a~~i~~lsy~Ea~ 201 (411)
.|++.+.- .|..|..+|.+|+++.+...+|+ ||+. .+...+..+.-+|+.
T Consensus 249 SGqvlnvN---a~~~a~elA~~L~~~kli~l~d~-------g~~l~e~ge~~S~l~l~~e~ 299 (520)
T KOG2436 249 SGQVLNVN---ADEVAGELALALGPDKLILLMDK-------GRILKENGEDISSLILQEED 299 (520)
T ss_pred CCCEEEEE---HHHHHHHHHHCCCCCEEEEECCC-------CCCCCCCCCCCCCCCCCHHH
T ss_conf 66168751---78776688743584006875045-------54245575556402166667
No 168
>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=93.10 E-value=0.45 Score=27.10 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=53.1
Q ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHH-----HHHHHHHHHHCCCC
Q ss_conf 69999667866785579999999986798299997078489999708899-----99999999870977
Q gi|254780873|r 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYT-----ELAVRSLHSCYGLD 409 (411)
Q Consensus 346 a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~-----~~Av~~LH~~F~ld 409 (411)
+.|.+--..|..-.|...|+++.|.++||.++-+-+.=-++|++|++++. ++.++.++++...|
T Consensus 2 ~~I~I~K~lMN~EvGF~rKvL~IlE~~~IS~EHmPSGID~~siiv~~~~l~~~~~~~ii~~I~~~l~pD 70 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTDEKEQKILAEIKEELHPD 70 (76)
T ss_pred EEEEEEHHHHCHHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEHHHCCCHHHHHHHHHHHHHCCCC
T ss_conf 299987877020464899999999983998645588866089998868747058999999999762997
No 169
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=92.96 E-value=0.11 Score=31.17 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=31.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHH
Q ss_conf 5000484100014554128501112344322223331012123024
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d 319 (411)
+.++||.++|+-..|++.|+|++-++-+.++......++++++.++
T Consensus 7 veN~pGvL~Rit~lF~rRg~NI~Sl~v~~te~~~~sR~tivv~~~~ 52 (72)
T cd04878 7 VENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDD 52 (72)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCH
T ss_conf 9778789999999986078556789986137998489999997888
No 170
>PRK04435 hypothetical protein; Provisional
Probab=92.44 E-value=0.19 Score=29.71 Aligned_cols=63 Identities=27% Similarity=0.365 Sum_probs=43.4
Q ss_pred HCCC-CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHH-HHHHHHHHHH
Q ss_conf 0127-75000484100014554128501112344322223331012123024776-6887898886
Q gi|254780873|r 269 ISLR-RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEK-ALAVLSDNKE 332 (411)
Q Consensus 269 Iti~-~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~-~~~~L~~~~~ 332 (411)
+|+. .+.+.+|.+++++..+++++-||--|.|+.+-++. .+++++++-.+... +...++++..
T Consensus 69 iTl~l~l~d~~G~LS~vL~~ia~~~~NILTInQ~IPi~g~-A~vtiSi~~s~~~~~i~~ll~~l~~ 133 (146)
T PRK04435 69 ITLSLLLEDRVGTLSKVLNVIAELGGNILTINQSIPINGR-ANVTLSIDTSSMEGDIDELLEKLRN 133 (146)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCE-EEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 9999998388757999999999769978997168877886-7799999914766799999999870
No 171
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=91.90 E-value=0.25 Score=28.89 Aligned_cols=68 Identities=15% Similarity=0.134 Sum_probs=51.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 50004841000145541285011123443222233310121230247766887898886059615897
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQH 341 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~ 341 (411)
+.+++|.+.||.+.|.+.+-||+-++-..++....-+++|.++-+|-..+.-++..+.+...+-.|+.
T Consensus 9 V~dq~gvLNRIT~lF~RrqfNI~sltVg~te~~gIS~mt~vv~v~d~~~~eqlikqL~KqInVL~V~~ 76 (84)
T PRK13562 9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVEC 76 (84)
T ss_pred EECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHEEEEEEEE
T ss_conf 95475088898999998517822688636789883426999964867899999999985455798999
No 172
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=91.83 E-value=0.3 Score=28.28 Aligned_cols=76 Identities=25% Similarity=0.466 Sum_probs=50.1
Q ss_pred HCCC-CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHH-HHHHHHHHHHHHCCCCEEEEECCEE
Q ss_conf 0127-7500048410001455412850111234432222333101212302477-6688789888605961589748916
Q gi|254780873|r 269 ISLR-RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLE-KALAVLSDNKENIGYDVIQHEDNLV 346 (411)
Q Consensus 269 Iti~-~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~-~~~~~L~~~~~~~~~~~I~~~~~~a 346 (411)
+|++ .+.+..|.+++++..+++..+||--|.|+.+-.+. .+++++++....+ .+..+.+++.+ + +++.
T Consensus 73 ~TL~l~ledr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~-Anvtlsi~~ssm~~~V~~ii~kl~k---~------e~V~ 142 (150)
T COG4492 73 ITLSLSLEDRVGILSDVLDVIAREEINVLTIHQTIPLQGR-ANVTLSIDTSSMEKDVDKIIEKLRK---V------EGVE 142 (150)
T ss_pred EEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCE-EEEEEEEECHHHHHHHHHHHHHHHC---C------CCEE
T ss_conf 9999997133315999999999727847998604443764-2589999713324229999999852---1------5546
Q ss_pred EEEEECCC
Q ss_conf 99996678
Q gi|254780873|r 347 KISAIGIG 354 (411)
Q Consensus 347 ~ISvVG~g 354 (411)
+|-++|.|
T Consensus 143 kVeivgs~ 150 (150)
T COG4492 143 KVEIVGSG 150 (150)
T ss_pred EEEEEECC
T ss_conf 89985069
No 173
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=91.77 E-value=0.23 Score=29.04 Aligned_cols=62 Identities=24% Similarity=0.302 Sum_probs=44.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 000484100014554128501112344322223331012123024776688789888605961
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYD 337 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~ 337 (411)
.+.||.+++|.+.++++++|+.-+.....+ .....+.|.+.=.+.+.+..++.+++.-.++.
T Consensus 6 ~Dr~GlL~dI~~~is~~~~nI~~v~~~~~~-~~~~~~~~~v~V~d~~~L~~li~~l~~i~~V~ 67 (71)
T cd04876 6 IDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVI 67 (71)
T ss_pred ECCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCEEEEEEEEEECCHHHHHHHHHHHHCCCCCE
T ss_conf 837787999999999879967999999758-98699999999889999999999987799915
No 174
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=91.52 E-value=0.77 Score=25.56 Aligned_cols=109 Identities=17% Similarity=0.224 Sum_probs=60.2
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCCCCHHCCCCCCCCCCCCCHHHHHHHHC
Q ss_conf 8876433138526761123777776543545454210122-231011123-46620001277500048410001455412
Q gi|254780873|r 214 RSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIME-KKVITGIAY-TKDEAQISLRRLRDHPGISASIFSPLAEA 291 (411)
Q Consensus 214 ~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~-~~~Vk~Is~-~~~i~~Iti~~~~~~~g~~a~If~~La~~ 291 (411)
.+..-+.++||.||-.+.-+. +.. ..=.+|.+.++... -..-+|-+. .+|+..+ -|++.||-+.+|.+.|.++
T Consensus 19 ~~~~~L~eagINiRA~tiAdt-~dF-GIiRmvV~~~d~A~~~Lee~gF~Vr~~dVlaV---EmeD~PG~l~~I~~vl~d~ 93 (142)
T COG4747 19 SVANKLKEAGINIRAFTIADT-GDF-GIIRMVVDRPDEAHSVLEEAGFTVRETDVLAV---EMEDVPGGLSRIAEVLGDA 93 (142)
T ss_pred HHHHHHHHCCCCEEEEEECCC-CCC-CEEEEECCCHHHHHHHHHHCCCEEEEEEEEEE---EECCCCCCHHHHHHHHHHC
T ss_conf 999999976986588873036-675-36999708858999999877938986248999---8158887088999987414
Q ss_pred CCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 850111234432222333101212302477668878988
Q gi|254780873|r 292 HINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 292 ~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
+||+|-|--=.++.-. .+ ..+.-+|.+++.++|++.
T Consensus 94 diNldYiYAFv~ek~K--Al-li~r~ed~d~~~~aLed~ 129 (142)
T COG4747 94 DINLDYIYAFVTEKQK--AL-LIVRVEDIDRAIKALEDA 129 (142)
T ss_pred CCCCEEEEEEEECCCE--EE-EEEEHHHHHHHHHHHHHC
T ss_conf 8672014565303733--79-999845778899999975
No 175
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=91.46 E-value=1.2 Score=24.29 Aligned_cols=118 Identities=17% Similarity=0.224 Sum_probs=70.2
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCEEC--CCCCCCCCCCCCCCEEECCHH--------HHHHHHHHHHHHHHH----
Q ss_conf 001277500048410001455412850111--234432222333101212302--------477668878988860----
Q gi|254780873|r 268 QISLRRLRDHPGISASIFSPLAEAHINIDM--IIQNVSEDGQYVDITFTTPSS--------SLEKALAVLSDNKEN---- 333 (411)
Q Consensus 268 ~Iti~~~~~~~g~~a~If~~La~~~I~Vdm--I~qs~s~~~~~~~Isf~i~~~--------d~~~~~~~L~~~~~~---- 333 (411)
.|.+. .++.||..++|...|+.+++||-- |. +..++..++ +|.+.+. ....+...+.+....
T Consensus 687 ei~I~-~~Dr~~LFa~i~~~l~~~~lnI~~A~I~--t~~dg~~ld-~f~V~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~ 762 (862)
T PRK01759 687 EIFIY-CQDQANLFLKVVSTIGAKKLSIHDAQII--TSQDGYVFD-SFIVTELNGKLLEFDRRRQLEQALTKALNTSKLP 762 (862)
T ss_pred EEEEE-ECCCCCHHHHHHHHHHHCCCCEEEEEEE--ECCCCCEEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999-4388668999999999789835886747--737883899-9999568999765689999999999985555455
Q ss_pred ------------CCC-CEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEECH
Q ss_conf ------------596-158974----891699996678667855799999999867982999--9707848--9999708
Q gi|254780873|r 334 ------------IGY-DVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLIDS 392 (411)
Q Consensus 334 ------------~~~-~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~~ 392 (411)
+.+ ..|.+. ++.+++.|.. .+.||..+++..+|.+.|++|.. |+|-.-+ =.|.|..
T Consensus 763 ~~~~~~~~~~~~f~v~t~V~~~~d~s~~~TvleV~a---~DrpGLL~~I~~~f~~~~l~I~~AkI~T~Gerv~DvFyVtd 839 (862)
T PRK01759 763 KLCNLENHKLQHFHVQTEVRFLNESKQEHTEMELFA---LDKAGLLAEVSQIFSELNLNLLNAKITTIGEKAEDFFILTN 839 (862)
T ss_pred CCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEEC
T ss_conf 422345666788999985697558888848999996---88178999999999987987989896267854899999978
No 176
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=91.37 E-value=1.1 Score=24.46 Aligned_cols=62 Identities=21% Similarity=0.294 Sum_probs=35.7
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCCCCCC------CCCCCCEEECCH-HHHHHHHHHHHHHHHHCCC
Q ss_conf 0004841000145541285011123443222------233310121230-2477668878988860596
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQNVSED------GQYVDITFTTPS-SSLEKALAVLSDNKENIGY 336 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs~s~~------~~~~~Isf~i~~-~d~~~~~~~L~~~~~~~~~ 336 (411)
+++||+.+++...|++++|||.-+.|...+. --...+...+|. .++..+...|+++..++.+
T Consensus 7 ~DrpGIv~~it~~La~~~inI~~l~t~~~~a~~sg~~lF~a~~~v~lP~~~~~~~L~~~l~~l~~~l~v 75 (81)
T cd04869 7 NDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEELCDDLNV 75 (81)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHCE
T ss_conf 899887999999999869981466877763999981036899999379999999999999999887331
No 177
>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]
Probab=91.15 E-value=1.3 Score=24.09 Aligned_cols=125 Identities=15% Similarity=0.177 Sum_probs=74.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCH--HHHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf 50004841000145541285011123443222233310121230--2477668878988860596158----97489169
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPS--SSLEKALAVLSDNKENIGYDVI----QHEDNLVK 347 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~--~d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~ 347 (411)
+.+.||.+.++.+.|++-|.|++.++-+..++....-+++.+.. ..++++.+.|+++..-+++..+ .++..+++
T Consensus 11 v~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~~~~~~veRel~L 90 (163)
T COG0440 11 VENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDLTSEPHVERELAL 90 (163)
T ss_pred EECCCCEEEHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHEEEEE
T ss_conf 97789814141688875176632079960278981589999827851689999998754350268984776301016578
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHH
Q ss_conf 99966786678557999999998679829999707848999970889999999999
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH 403 (411)
|-+-..+-. -+.+.....-...++.-++....-+-+-=+.+..+.-++.|.
T Consensus 91 iKv~~~~~~-----R~ei~~~~~ifr~~vvDvs~~~~~~eltG~~~ki~afi~~l~ 141 (163)
T COG0440 91 IKVSAEGSE-----RGEIARITEIFRASVVDVSPESLTIELTGDEEKIEAFIRLLR 141 (163)
T ss_pred EEEECCCCC-----HHHHHHHHHHHCCEEEECCCCEEEEEEECCHHHHHHHHHHHC
T ss_conf 997358200-----689999998747668744721289999078289999999844
No 178
>PRK05007 PII uridylyl-transferase; Provisional
Probab=91.14 E-value=1.3 Score=24.08 Aligned_cols=117 Identities=19% Similarity=0.243 Sum_probs=70.0
Q ss_pred HHCCCCCCCCCCCCCHHHHHHHHCCCCEEC--CCCCCCCCCCCCCCEEEC--------CHHHHHHHHHHHHHHHHH----
Q ss_conf 001277500048410001455412850111--234432222333101212--------302477668878988860----
Q gi|254780873|r 268 QISLRRLRDHPGISASIFSPLAEAHINIDM--IIQNVSEDGQYVDITFTT--------PSSSLEKALAVLSDNKEN---- 333 (411)
Q Consensus 268 ~Iti~~~~~~~g~~a~If~~La~~~I~Vdm--I~qs~s~~~~~~~Isf~i--------~~~d~~~~~~~L~~~~~~---- 333 (411)
.|.+. .++.||..+++...|+..++||-- |.+ +.++..++ +|.+ +++..+.+...|.+....
T Consensus 700 ei~I~-~~Dr~~LFa~i~g~L~~~~lnI~~A~I~t--~~dg~~ld-~F~V~~~~g~~~~~~r~~~i~~~L~~~l~~~~~~ 775 (881)
T PRK05007 700 EIFIY-SPDRPYLFAAVCAELDRRNLSVHDAQIFT--SRDGMAMD-TFIVLEPDGSPLSQDRHQVIRKALEQALTQSSPQ 775 (881)
T ss_pred EEEEE-EECCCCHHHHHHHHHHHCCCEEEEEEEEE--CCCCEEEE-EEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99999-60788739999999986898368878798--17980899-9999778899899899999999999987288744
Q ss_pred -------------CCC-CEEEE----ECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEEC
Q ss_conf -------------596-15897----4891699996678667855799999999867982999--9707848--999970
Q gi|254780873|r 334 -------------IGY-DVIQH----EDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLID 391 (411)
Q Consensus 334 -------------~~~-~~I~~----~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~ 391 (411)
+.+ ..|.+ .++.+++-|.. .+.||..+++..+|.+.+++|.. |+|-.-+ =.|.|.
T Consensus 776 ~~~~r~~~r~~k~f~v~t~V~~~~~~s~~~TviEv~a---~DrpGLL~~I~~~f~~~~l~I~~AKIsT~GerveDvFyVt 852 (881)
T PRK05007 776 PPKPRRLPRKLRHFNVPTEVNFLPTHTDRKSFMELIA---LDQPGLLARVGKIFADLGISLHGAKITTIGERVEDLFILA 852 (881)
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEE
T ss_conf 3000346743457899987998228888738999985---8806799999999998898798989625476489999998
No 179
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.53 E-value=0.25 Score=28.78 Aligned_cols=56 Identities=30% Similarity=0.466 Sum_probs=37.5
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 7500048410001455412850111234432222333101212302477668878988
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
.++++||-++++++.|++++|||+-+--..+..+..--+-| .-+|.+++.++|++.
T Consensus 5 ev~D~pGgL~~il~~L~~~~INIeY~Yaf~~~~~~~a~lI~--r~~d~e~a~~~L~~~ 60 (65)
T cd04882 5 EVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIF--RTEDIEKAIEVLQER 60 (65)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEE--EECCHHHHHHHHHHC
T ss_conf 94798871999999998879887999999437897689999--819999999999986
No 180
>PRK06349 homoserine dehydrogenase; Provisional
Probab=90.39 E-value=0.3 Score=28.29 Aligned_cols=49 Identities=22% Similarity=0.351 Sum_probs=34.0
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEEC---C--CEEEEE---ECHHHHHHHHHHHHH
Q ss_conf 678557999999998679829999707---8--489999---708899999999998
Q gi|254780873|r 356 QSYAGVASAFFLCLAEKGINIKAITTS---E--IKISVL---IDSAYTELAVRSLHS 404 (411)
Q Consensus 356 ~~~~Giaakif~aL~~~~InI~~issS---e--~~IS~V---V~~~d~~~Av~~LH~ 404 (411)
++.||+.+++-+.|++++|.|..+-+- + ..+-++ +.+++.++|+..|-+
T Consensus 360 ~D~PGVLa~It~ila~~~ISI~sviQ~~~~~~~a~iViiTh~~~e~~i~~Al~eI~~ 416 (432)
T PRK06349 360 ADKPGVLAKIAAIFAENGVSIESILQKGADDDGAEIVVVTHETSEAALRAALAAIEA 416 (432)
T ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCEEEEEEECCCCHHHHHHHHHHHHC
T ss_conf 675037999999998769862477764888995369999162879999999999874
No 181
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=90.20 E-value=0.25 Score=28.88 Aligned_cols=57 Identities=12% Similarity=0.158 Sum_probs=41.0
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC--CHHHHHHHHHHHHHH
Q ss_conf 500048410001455412850111234432222333101212--302477668878988
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT--PSSSLEKALAVLSDN 330 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i--~~~d~~~~~~~L~~~ 330 (411)
+.++||.++||-..|++.|-||+-++-+..+......+++++ ++..++++.+.|+++
T Consensus 9 Ven~pGVL~RVaGLFsrRGyNI~SL~Vg~te~~~~SRmTivv~gd~~~ieQi~kQL~KL 67 (76)
T PRK06737 9 IHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred ECCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHCC
T ss_conf 81787688987778621665711256746679982079999977813499999998505
No 182
>PRK05092 PII uridylyl-transferase; Provisional
Probab=90.10 E-value=1.6 Score=23.48 Aligned_cols=122 Identities=19% Similarity=0.252 Sum_probs=70.7
Q ss_pred CCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---------HHHHHHHHHHHHHH---
Q ss_conf 620001277500048410001455412850111234432222333101212302---------47766887898886---
Q gi|254780873|r 265 DEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---------SLEKALAVLSDNKE--- 332 (411)
Q Consensus 265 ~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---------d~~~~~~~L~~~~~--- 332 (411)
+.+.|++. .+++||..+++...|+.+|+||-----.+..++..++. |.+.+. ..+++...+++...
T Consensus 734 ~~tev~V~-~~DrpgLFa~iagala~~glnI~dA~I~T~~dG~alD~-F~V~d~~g~~~~~~~r~~~l~~~i~~~L~g~~ 811 (934)
T PRK05092 734 GVTELTVL-AADHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDT-FWIQDAFGRDEDEPRRLARLGKAIEDALSGEV 811 (934)
T ss_pred CEEEEEEE-EECCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEE-EEEECCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 84899999-61788859999999997899547889898489809999-99966888988889999999999999975887
Q ss_pred --------H---------CCC-CEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCEE--
Q ss_conf --------0---------596-158974----891699996678667855799999999867982999--97078489--
Q gi|254780873|r 333 --------N---------IGY-DVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIKI-- 386 (411)
Q Consensus 333 --------~---------~~~-~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~I-- 386 (411)
. +.+ -.|.+. .+..+|-|.+ .+.||..+++..+|.+.|++|.. |+|-.-++
T Consensus 812 ~~~~~~~~r~~~~~r~k~f~v~~~V~idn~~S~~~TviEV~a---~DRPGLL~~I~~~l~~~~l~I~sAkIaT~Gerv~D 888 (934)
T PRK05092 812 RLPEALAKRTKPKKRARAFKVPPRVTIDNEASNRFTVIEVNG---RDRPGLLYDLTRALSDLNLNIASAHIATYGERAVD 888 (934)
T ss_pred CCHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEE
T ss_conf 634566512576554567999987998258988758999995---88078999999999988977999896255762899
Q ss_pred EEEEC
Q ss_conf 99970
Q gi|254780873|r 387 SVLID 391 (411)
Q Consensus 387 S~VV~ 391 (411)
.|.|.
T Consensus 889 vFyVt 893 (934)
T PRK05092 889 VFYVT 893 (934)
T ss_pred EEEEE
T ss_conf 99997
No 183
>PRK03059 PII uridylyl-transferase; Provisional
Probab=90.09 E-value=1.6 Score=23.48 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=67.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCH-HHH-------HHHHHHHHHHH-H------------
Q ss_conf 50004841000145541285011123443222233310121230-247-------76688789888-6------------
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPS-SSL-------EKALAVLSDNK-E------------ 332 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~-~d~-------~~~~~~L~~~~-~------------ 332 (411)
.++.||..+++...|+.+++||.-----+..++..++. |.+.+ ... ..+...|.+.. .
T Consensus 686 ~~Dr~gLFa~i~g~l~~~~lnI~~A~i~t~~dG~ald~-F~V~~~~~~~~~~~~~~~i~~~L~~~l~~~~~~~~~~~~r~ 764 (857)
T PRK03059 686 TPDQPDLFARICGYFDRNGFSILDARVHTTRHGYALDT-FQVTDPERDVHYRDIANLVEHELAERLAESAPLPEPSKGRL 764 (857)
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEEEEEEECCCCCEEEE-EEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCC
T ss_conf 57888829999999987898278889998378838999-99956887743389999999999998605566540220334
Q ss_pred -----HCCC-CEEEEEC----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEECH
Q ss_conf -----0596-1589748----91699996678667855799999999867982999--9707848--9999708
Q gi|254780873|r 333 -----NIGY-DVIQHED----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLIDS 392 (411)
Q Consensus 333 -----~~~~-~~I~~~~----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~~ 392 (411)
.+++ -.|.+.+ +.++|.|.. .+.||..+++..+|.+.+++|.. |+|-.-. =.|.|+.
T Consensus 765 ~r~~k~f~~~~~V~i~~~~s~~~TvlEV~a---~DrpGLL~~I~~~l~~~~l~I~~AkI~T~Gerv~DvFyV~g 835 (857)
T PRK03059 765 SRQSRSFPITPRVDLRPDERGQYYILSVSA---NDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDVFLLDG 835 (857)
T ss_pred CCCCCCCCCCCEEEEEECCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEECC
T ss_conf 410015899985899517988748999995---88177999999999988977989896364761899999859
No 184
>PRK04374 PII uridylyl-transferase; Provisional
Probab=89.20 E-value=1.8 Score=23.04 Aligned_cols=122 Identities=15% Similarity=0.201 Sum_probs=70.1
Q ss_pred CCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC-CHH-----HHHHHHHHHHHHHH-------
Q ss_conf 20001277500048410001455412850111234432222333101212-302-----47766887898886-------
Q gi|254780873|r 266 EAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT-PSS-----SLEKALAVLSDNKE------- 332 (411)
Q Consensus 266 i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i-~~~-----d~~~~~~~L~~~~~------- 332 (411)
.+.|.+. .++.||..+++...|+..++||------++.++..++. |.+ +.+ +.++....+++...
T Consensus 690 ~~ei~I~-~~Dr~gLFa~i~g~L~~~~l~I~~A~I~t~~~g~vlDt-F~V~~~~~~~~~~~~r~~~~l~~~l~~~l~~~~ 767 (869)
T PRK04374 690 ALEVFVY-SPDRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDV-FEVLPQDTYADGDPQRLAAALRQVLAGDLQKVR 767 (869)
T ss_pred EEEEEEE-ECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCEEEEE-EEECCCCCCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 3899999-26887769999999997899768777787589838999-996477667767789999999999737642134
Q ss_pred -----------HCCC-CEEEEE----CCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCEE--EEEECH
Q ss_conf -----------0596-158974----891699996678667855799999999867982999--97078489--999708
Q gi|254780873|r 333 -----------NIGY-DVIQHE----DNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIKI--SVLIDS 392 (411)
Q Consensus 333 -----------~~~~-~~I~~~----~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~I--S~VV~~ 392 (411)
.+.+ -.|.+. ++..++.|.. .+.||..+++..+|.+.+++|.. |+|-.-++ .|.|..
T Consensus 768 ~~~r~~~r~~k~f~v~~~V~~~~~~s~~~Tvlev~a---~DrpGLL~~I~~~~~~~~l~I~~AkI~T~GerveDvFyvtd 844 (869)
T PRK04374 768 PSRRAVPRQLRHFRFAPRVEFSESAGGRRTRISLVA---PDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITD 844 (869)
T ss_pred CCCCCCCCCCCCCCCCCEEEEECCCCCCEEEEEEEE---CCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEEEEC
T ss_conf 001346643467999987998048988869999996---88277999999999988987988796366750899999978
No 185
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=88.82 E-value=0.46 Score=27.04 Aligned_cols=57 Identities=19% Similarity=0.333 Sum_probs=40.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH-HHHHHHHHHHHH
Q ss_conf 500048410001455412850111234432222333101212302-477668878988
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS-SLEKALAVLSDN 330 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~-d~~~~~~~L~~~ 330 (411)
+.++||+++||-..|++.|-||+-++-+..+.....-|+.++..+ .++++.+.|+++
T Consensus 15 V~N~pGVL~RV~gLFsrRgyNIeSL~v~~te~~~~SRiTivv~~d~~leQi~kQL~KL 72 (96)
T PRK08178 15 VRNHPGVMTHVCGLFARRAFNVEGILCLPIQDSDKSRIWLLVNDDQRLEQMISQIDKL 72 (96)
T ss_pred EECCCCHHHHHHHHHHCCCCCCCEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHC
T ss_conf 9577878999988875056681207885138998108999988984489999998615
No 186
>COG3603 Uncharacterized conserved protein [Function unknown]
Probab=87.48 E-value=0.6 Score=26.26 Aligned_cols=64 Identities=23% Similarity=0.259 Sum_probs=45.4
Q ss_pred CCCCCCCCHHCCCCC--CCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 123466200012775--00048410001455412850111234432222333101212302477668878988
Q gi|254780873|r 260 IAYTKDEAQISLRRL--RDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 260 Is~~~~i~~Iti~~~--~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
|...++-..+++++. .+.+|+++.|.+.|++++|.|..+++-.. |- ..+.++|++++.+.|++.
T Consensus 57 V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydt------Dh-iLVr~~dLekAv~~L~ea 122 (128)
T COG3603 57 VQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDT------DH-ILVREEDLEKAVKALEEA 122 (128)
T ss_pred EEECCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCC------CE-EEEEHHHHHHHHHHHHHC
T ss_conf 5754880799983465578304146654457657952799971257------46-998345599999999970
No 187
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.42 E-value=2.3 Score=22.29 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=31.4
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCC-CC-CCCCCCCEEECCHHHHHHHHHHHHH
Q ss_conf 750004841000145541285011123443-22-2233310121230247766887898
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNV-SE-DGQYVDITFTTPSSSLEKALAVLSD 329 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~-s~-~~~~~~Isf~i~~~d~~~~~~~L~~ 329 (411)
.+||+||..++|.+.|++++||+-=|-=.. -| ....+.++|. ++++++++.++|++
T Consensus 7 dVpD~pG~Ia~vt~~L~~~~IsI~nI~Il~~RE~~~GvLri~F~-~~~d~~~A~~~L~~ 64 (69)
T cd04909 7 DVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFK-TQEDRERAKEILKE 64 (69)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCCCEEEEEEC-CHHHHHHHHHHHHH
T ss_conf 67999986999999999879874724876851478847999968-98999999999998
No 188
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=86.17 E-value=1.1 Score=24.39 Aligned_cols=60 Identities=15% Similarity=0.119 Sum_probs=39.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECC-HHHHHHHHHHHHHHHHHC
Q ss_conf 5000484100014554128501112344322223331012123-024776688789888605
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTP-SSSLEKALAVLSDNKENI 334 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~-~~d~~~~~~~L~~~~~~~ 334 (411)
+.+.||-+++++++|++++||+-.|-+-.|... .....|.++ +.+.+++..+++.+++..
T Consensus 7 lk~~~GaL~~~L~~F~~~~iNlthIESRpSk~~-~~~Y~ffvD~e~~~~~l~~~l~~Lk~~~ 67 (74)
T cd04929 7 LKNEVGGLAKALKLFQELGINVVHIESRKSKRR-SSEFEIFVDCECDQRRLDELVQLLKREV 67 (74)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC-CCEEEEEEEECCCHHHHHHHHHHHHHHC
T ss_conf 688656799999999986977799855878788-9718999990399799999999999852
No 189
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=85.69 E-value=1.1 Score=24.61 Aligned_cols=60 Identities=23% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCC---CCCCCCCEEECCHHHHHHHHHHHHHHHHH
Q ss_conf 5000484100014554128501112344322---22333101212302477668878988860
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSE---DGQYVDITFTTPSSSLEKALAVLSDNKEN 333 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~---~~~~~~Isf~i~~~d~~~~~~~L~~~~~~ 333 (411)
++|.||-++++++.+++.|-||.-|.+.-.. .-....+.|++...+.+....+++.+.+.
T Consensus 5 i~D~PG~L~~l~~~ia~~gaNI~~i~H~R~~~~~~~~~~~v~i~~Et~~~eh~~~i~~~L~~~ 67 (73)
T cd04886 5 LPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALREA 67 (73)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 348981799999999986982899999864588988769999999849999999999999986
No 190
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=85.68 E-value=2.9 Score=21.69 Aligned_cols=133 Identities=21% Similarity=0.310 Sum_probs=72.0
Q ss_pred HHCCC-CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCC-C--CCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 00127-750004841000145541285011123443222-2--3331012123024776688789888605961589748
Q gi|254780873|r 268 QISLR-RLRDHPGISASIFSPLAEAHINIDMIIQNVSED-G--QYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHED 343 (411)
Q Consensus 268 ~Iti~-~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~-~--~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~ 343 (411)
++++. -+.+.||-+-++++.|++.|.|+.-|..+-.+. + ..+.++|-.+.+ ++..++++.+ +..++.-+.+..
T Consensus 5 ritldIEL~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d~~--~~~~~i~~~~-e~~Gi~I~~~dg 81 (170)
T COG2061 5 RITLDIELKDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGDRE--DKDAKIIRLL-EEEGIIIIRFDG 81 (170)
T ss_pred EEEEEEEECCCCCCHHHHHCCHHHCCCCEEEEEEECCCCCCCCEEEEEEEEECCC--HHHHHHHHHH-HHCCCEEEEECC
T ss_conf 9999999448871264443205234861899996137434894048999983562--7889999999-867948999658
Q ss_pred ----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEE-----EEEE---ECCCEEEEEE-CHHHHHHHHHHHHHH
Q ss_conf ----916999966786678557999999998679829-----9997---0784899997-088999999999987
Q gi|254780873|r 344 ----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINI-----KAIT---TSEIKISVLI-DSAYTELAVRSLHSC 405 (411)
Q Consensus 344 ----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI-----~~is---sSe~~IS~VV-~~~d~~~Av~~LH~~ 405 (411)
...-+-+||.=. +.++.-.+-..=.-.+-.+ .|-. -|...|.+.. ++++.++|++.|.+.
T Consensus 82 ~~~~~~~~vvLIGhiv--~tdiqDTId~In~ig~A~vvDl~L~Mp~~e~~SsA~iti~a~~~e~l~ea~~~l~ev 154 (170)
T COG2061 82 ARLREKTDVVLIGHIV--HTDIQDTIDRINSIGGAEVVDLSLSMPGIEGESSARITIIAVGKEKLDEALRRLKEV 154 (170)
T ss_pred CCCCEEEEEEEEEEEE--CCCHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCEEEEEEECCHHHHHHHHHHHHHH
T ss_conf 6763168699997455--176787788763348779999886547998775305999973836899999999998
No 191
>PRK10872 relA GDP/GTP pyrophosphokinase; Provisional
Probab=85.05 E-value=1.3 Score=24.04 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=50.2
Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEEC-----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE-CC---
Q ss_conf 2123024776688789888605961589748-----91699996678667855799999999867982999970-78---
Q gi|254780873|r 313 FTTPSSSLEKALAVLSDNKENIGYDVIQHED-----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT-SE--- 383 (411)
Q Consensus 313 f~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~-----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss-Se--- 383 (411)
.+++..++..+.....+..+++ -.+.... -.+.|.+.+ .+.+|+.+.+.++++++++||..+++ ++
T Consensus 631 I~IHr~dC~nl~~l~~~~peR~--I~v~W~~~~~~~f~~~I~I~a---~Dr~GlL~dIt~vIs~~~~NI~~v~~~sd~~~ 705 (743)
T PRK10872 631 ISVHRADCEQLAELRSHAPERI--VDAVWGESYSAGYSLVVRVVA---NDRSGLLRDITTILANEKVNVLGVASRSDTKQ 705 (743)
T ss_pred EEEECCCCCCHHHHHHCCCCEE--EEEEECCCCCCEEEEEEEEEE---ECCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 8997746747666753697747--990737988862689999999---77878999999999847998366352661789
Q ss_pred --CEEEEEEC---HHHHHHHHHHHHH
Q ss_conf --48999970---8899999999998
Q gi|254780873|r 384 --IKISVLID---SAYTELAVRSLHS 404 (411)
Q Consensus 384 --~~IS~VV~---~~d~~~Av~~LH~ 404 (411)
..+.|-|+ -++..+.++.|.+
T Consensus 706 ~~~~i~~~ieV~d~~~L~~li~~Lr~ 731 (743)
T PRK10872 706 QLATIDMTIEIYNLQVLGRVLGKLNQ 731 (743)
T ss_pred CEEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 88999999997889999999999758
No 192
>COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only]
Probab=85.04 E-value=2.6 Score=21.99 Aligned_cols=58 Identities=21% Similarity=0.328 Sum_probs=39.9
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE------CCCEEEEEECHHHHHHHHHHH
Q ss_conf 91699996678667855799999999867982999970------784899997088999999999
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT------SEIKISVLIDSAYTELAVRSL 402 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss------Se~~IS~VV~~~d~~~Av~~L 402 (411)
++.+|.+.- ...+.||+.+.+++.+++.||+|+.+-+ -+-.+.+|.++.--.+.+..|
T Consensus 92 G~gViei~~-~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el 155 (167)
T COG2150 92 GLGVIEIYP-EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDEL 155 (167)
T ss_pred CCEEEEEEE-CCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHH
T ss_conf 870799995-4677765899999999875961898725796657885089998056887899998
No 193
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=84.91 E-value=0.96 Score=24.89 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=32.1
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHH
Q ss_conf 50004841000145541285011123443222233310121230247766887898
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSD 329 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~ 329 (411)
+++.+|.++++-+.|++++|||.-+..........--+.|-+...+-..+.+.|++
T Consensus 8 V~Dr~G~La~va~i~~~~~iNI~Sv~vyp~~~~~~~ilv~Rv~T~~p~~li~~L~~ 63 (72)
T cd04883 8 VPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR 63 (72)
T ss_pred ECCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHH
T ss_conf 57986729999999997597589999841688985899999725996999999998
No 194
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=83.41 E-value=2 Score=22.82 Aligned_cols=60 Identities=15% Similarity=0.158 Sum_probs=36.1
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH-HHHHHHHHHHHHHHHC
Q ss_conf 500048410001455412850111234432222333101212302-4776688789888605
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS-SLEKALAVLSDNKENI 334 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~-d~~~~~~~L~~~~~~~ 334 (411)
+.+.||-+++++++|++++||.-.|-+-.+... .-...|.++=+ ....+..+|+.+++..
T Consensus 7 ~~~~~GaL~~~L~~F~~~~iNlt~IESRPs~~~-~~~y~FfvD~eg~~~~i~~al~~Lk~~~ 67 (74)
T cd04904 7 LKEEVGALARALKLFEEFGVNLTHIESRPSRRN-GSEYEFFVDCEVDRGDLDQLISSLRRVV 67 (74)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC-CCCEEEEEEEECCHHHHHHHHHHHHHHC
T ss_conf 589864899999999987986789983338999-9759999996089899999999999747
No 195
>PRK00466 acetyl-lysine deacetylase; Validated
Probab=83.20 E-value=3.7 Score=20.98 Aligned_cols=94 Identities=17% Similarity=0.191 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 04899999998614899889999998312999999999998439986356733245512133552000123621003343
Q gi|254780873|r 46 ETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHL 125 (411)
Q Consensus 46 ~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l 125 (411)
..++++++..++-..+++ |-.|.--+.++..+|++.|++.. ++.. ++...- + .. .+
T Consensus 8 ~~~~~~~ll~~Lv~I~S~-------sg~E~~~a~~l~~~l~~~g~~~~-i~~~----------~~~~~g--~-g~---i~ 63 (345)
T PRK00466 8 VKQKAKKLLLDLLSIYTP-------SGSEERAKDFFEKIASELNLNLE-VTST----------NSFFLG--D-GD---IL 63 (345)
T ss_pred HHHHHHHHHHHHCCCCCC-------CCCHHHHHHHHHHHHHHCCCEEE-EECC----------CCEECC--C-CC---EE
T ss_conf 899999999998088992-------97999999999999998799279-9678----------867607--9-98---89
Q ss_pred HHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 106805860343335568424430686242899999884
Q gi|254780873|r 126 KKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAI 164 (411)
Q Consensus 126 ~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l 164 (411)
-.+++=+|||++....+|. ..+|||-+|.-+.+.|...
T Consensus 64 l~gH~DtVP~~~~~~i~~~-~lYGRGa~DmKgglAa~l~ 101 (345)
T PRK00466 64 LASHVDTVPGYIEPKIEGE-TIYGRGAVDAKGPLISMIL 101 (345)
T ss_pred EECCCCCCCCCCCCEEECC-EEECCCCCCCCHHHHHHHH
T ss_conf 8258654599988688899-9986871015088999999
No 196
>PRK01215 competence damage-inducible protein A; Provisional
Probab=82.96 E-value=2.1 Score=22.59 Aligned_cols=68 Identities=22% Similarity=0.292 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244306862428
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTS 156 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~t 156 (411)
++..++..|.++|++..+.. .+.|+.. ++ .+.+...++...++|++|-+|-|.+ |.|
T Consensus 24 Ns~~la~~L~~~G~~v~~~~-----~V~D~~~---~I----~~~l~~a~~r~d~Vi~tGGLGPT~D-----------DlT 80 (264)
T PRK01215 24 NASWIARRLTYLGYSVRRIV-----VVPDDEE---EI----VEAFREAIGRADVVVSTGGLGPTYD-----------DMT 80 (264)
T ss_pred HHHHHHHHHHHCCCCEEEEE-----EECCCHH---HH----HHHHHHHHHCCCEEEEECCCCCCCC-----------HHH
T ss_conf 79999999997799388999-----9289899---99----9999999743899999489579985-----------679
Q ss_pred HHHHHHHHCHH
Q ss_conf 99999884734
Q gi|254780873|r 157 AVAIAAAIKAD 167 (411)
Q Consensus 157 A~~ia~~l~A~ 167 (411)
.-.+|.+++-.
T Consensus 81 ~eavA~a~g~~ 91 (264)
T PRK01215 81 NEGFAKALGVE 91 (264)
T ss_pred HHHHHHHHCCC
T ss_conf 99999984998
No 197
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=81.77 E-value=1.2 Score=24.36 Aligned_cols=26 Identities=38% Similarity=0.569 Sum_probs=21.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE-CCCC
Q ss_conf 0004841000145541285011-1234
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID-MIIQ 300 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd-mI~q 300 (411)
.+.||.++++-+.|+++++||. |..+
T Consensus 7 ~NvPG~l~~I~~il~~~~iNI~~m~~~ 33 (69)
T cd04901 7 KNVPGVLGQINTILAEHNINIAAQYLQ 33 (69)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHCCC
T ss_conf 698868999999999859997997242
No 198
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=81.55 E-value=2.5 Score=22.09 Aligned_cols=87 Identities=13% Similarity=0.167 Sum_probs=51.0
Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEEC-----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEEC-----
Q ss_conf 2123024776688789888605961589748-----916999966786678557999999998679829999707-----
Q gi|254780873|r 313 FTTPSSSLEKALAVLSDNKENIGYDVIQHED-----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTS----- 382 (411)
Q Consensus 313 f~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~-----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issS----- 382 (411)
.+++..++..+.. ++...++ .-.+.... -.+.|.+.+ .+.+|+.+.+.++++++++||..++..
T Consensus 592 I~IHr~~C~nl~~-~~~~per--~i~v~W~~~~~~~f~~~i~I~~---~dr~GlL~dIt~vIs~~~~NI~~v~~~~~~~~ 665 (702)
T PRK11092 592 LVIHHESCRNIRG-YQKEPEK--FMAVEWDKETEQEFITEIKVEM---FNHQGALANLTAAINTTGSNIQSLNTEEKDGR 665 (702)
T ss_pred EEEECCCCHHHHH-HHCCCCC--EEEEEECCCCCCEEEEEEEEEE---ECCCCHHHHHHHHHHHCCCCEEEEEEEECCCC
T ss_conf 7996857732554-2028365--7993866887871369999999---67878899999999857998157886874898
Q ss_pred --CCEEEEEE-CHHHHHHHHHHHHHH
Q ss_conf --84899997-088999999999987
Q gi|254780873|r 383 --EIKISVLI-DSAYTELAVRSLHSC 405 (411)
Q Consensus 383 --e~~IS~VV-~~~d~~~Av~~LH~~ 405 (411)
...+.+-| +.++.++.++.|..-
T Consensus 666 ~~~~~i~ieV~d~~hL~~ii~~Lr~i 691 (702)
T PRK11092 666 VYSAFIRLTARDRVHLANIMRKIRVM 691 (702)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHCC
T ss_conf 89999999989899999999998679
No 199
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=81.38 E-value=4.3 Score=20.54 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=11.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0004841000145541285011
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID 296 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd 296 (411)
+|.||+.+++...+.+++.||.
T Consensus 9 ~DrpGiv~~vs~~v~~~gcNi~ 30 (77)
T cd04893 9 TDRPGILNELTRAVSESGCNIL 30 (77)
T ss_pred CCCCHHHHHHHHHHHHCCCCEE
T ss_conf 8986599999999998699872
No 200
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=81.17 E-value=2.7 Score=21.87 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244306862428
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTS 156 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~t 156 (411)
++..++..|.+.|++..... ++.|+... -.+.+...++...++|++|-+|-+.+ |.|
T Consensus 20 N~~~l~~~L~~~G~~v~~~~-----~v~D~~~~-------I~~al~~~~~~~d~vi~tGGlGPT~D-----------DiT 76 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVT-----VVGDDEDR-------IAEALRRASERADLVITTGGLGPTHD-----------DLT 76 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----ECCCCHHH-------HHHHHHHHHHCCCEEEEECCCCCCCC-----------CCH
T ss_conf 49999999997798266899-----93988999-------99999999741999999478778998-----------538
Q ss_pred HHHHHHHHCHH
Q ss_conf 99999884734
Q gi|254780873|r 157 AVAIAAAIKAD 167 (411)
Q Consensus 157 A~~ia~~l~A~ 167 (411)
.-.+|.+++-.
T Consensus 77 ~eavA~a~g~~ 87 (170)
T cd00885 77 REAVAKAFGRP 87 (170)
T ss_pred HHHHHHHHCCC
T ss_conf 99999994898
No 201
>PRK08577 hypothetical protein; Provisional
Probab=81.08 E-value=1.9 Score=22.96 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=18.8
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEEC
Q ss_conf 500048410001455412850111
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDM 297 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~Vdm 297 (411)
+.|.||.+|++-+.|++++||+-+
T Consensus 63 v~DrpGvLA~is~~La~h~vdil~ 86 (135)
T PRK08577 63 VEDRPGVLAKISGLLAEHGVDILA 86 (135)
T ss_pred EECCCCHHHHHHHHHHHCCCCEEE
T ss_conf 945975699999999874853111
No 202
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=81.02 E-value=0.77 Score=25.55 Aligned_cols=27 Identities=30% Similarity=0.427 Sum_probs=21.9
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCC
Q ss_conf 000484100014554128501112344
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQN 301 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs 301 (411)
.|.||.+++|.+.|++++|||..+.-+
T Consensus 7 ~D~PGvi~~I~~~L~~~~iNI~~m~l~ 33 (71)
T cd04879 7 KDVPGVIGKVGTILGEHGINIAAMQVG 33 (71)
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHC
T ss_conf 397998999999999859788996412
No 203
>PRK11898 prephenate dehydratase; Provisional
Probab=80.78 E-value=4.5 Score=20.40 Aligned_cols=149 Identities=13% Similarity=0.029 Sum_probs=78.5
Q ss_pred HHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCC----CCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCC
Q ss_conf 45565346144024584212344110567999999988403----11013788764331385267611237777765435
Q gi|254780873|r 167 DRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLG----AKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLG 242 (411)
Q Consensus 167 ~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~G----akvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~G 242 (411)
..|.-|=+ +..|+++.++.-|-.+|.++..-+ .-.|-++ .-+..++.++.-+|.-+...+.+ .=
T Consensus 110 ~QC~~~L~---------~~~p~~~~v~~~sTa~Aa~~v~~~~~~~~AAIas~--~aa~~ygL~il~~~I~D~~~N~T-RF 177 (285)
T PRK11898 110 AQCRKWLA---------EHLPGAELEPANSTAAAAQYVAEHPAEPIAAIASE--RAAELYGLEILAEDIQDYPNNRT-RF 177 (285)
T ss_pred HHHHHHHH---------HHCCCCEEEECCCHHHHHHHHHHCCCCCEEECCHH--HHHHHCCCCEEECCCCCCCCCEE-EE
T ss_conf 99999999---------73888689990758999999984899771440447--66212485345046666775258-99
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---H
Q ss_conf 4545421012223101112346620001277500048410001455412850111234432222333101212302---4
Q gi|254780873|r 243 TLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---S 319 (411)
Q Consensus 243 T~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---d 319 (411)
=+|....... ..-+..+..+++ +.--.+.||.+.++++.|+++|||.-.|-+-... ...-...|.++=+ +
T Consensus 178 ~vi~~~~~~~-----~~~~~~~KtSl~-f~~~~d~pGaL~~~L~~Fa~~~INLtkIeSRP~~-~~~~~Y~FyiD~egh~~ 250 (285)
T PRK11898 178 WLLGRKKPPI-----PLRTGGDKTSLA-LTLPANVPGALYKALSEFAWRGINLTRIESRPTK-TGLGEYFFFIDLEGHID 250 (285)
T ss_pred EEEECCCCCC-----CCCCCCCEEEEE-EEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCCCEEEEEEEECCCC
T ss_conf 9997587789-----877788779999-9948999867999999999879375889820168-99961899999846879
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 776688789888605
Q gi|254780873|r 320 LEKALAVLSDNKENI 334 (411)
Q Consensus 320 ~~~~~~~L~~~~~~~ 334 (411)
-+.+..+|+++.+..
T Consensus 251 d~~v~~aL~~l~~~~ 265 (285)
T PRK11898 251 DVLVAEALKELEALG 265 (285)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 899999999999855
No 204
>PRK03670 competence damage-inducible protein A; Provisional
Probab=80.33 E-value=2.6 Score=22.03 Aligned_cols=69 Identities=26% Similarity=0.431 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHC-CEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 9999999998439986356733245512133552000123621003343106-805860343335568424430686242
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKK-QVVVITGFQGLSHDNSVTTLGRGGSDT 155 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~-~v~v~~Gf~g~~~~g~~ttlgRGGSD~ 155 (411)
++..++..|.++|++..... .+-|+.. .+ ...+...+... .+++++|-+|-|.+ |.
T Consensus 21 Ns~~la~~L~~~Gi~v~~~~-----~V~Dd~~---~I----~~~l~~~~~~~~d~Vi~tGGLGPT~D-----------Di 77 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRIT-----TVGDDVE---EI----KSVILEALDRKPEVLIISGGLGPTHD-----------DV 77 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----EECCCHH---HH----HHHHHHHHHCCCCEEEECCCCCCCCC-----------HH
T ss_conf 29999999996798188999-----9698899---99----99999998537999998388279972-----------66
Q ss_pred HHHHHHHHHCHHH
Q ss_conf 8999998847345
Q gi|254780873|r 156 SAVAIAAAIKADR 168 (411)
Q Consensus 156 tA~~ia~~l~A~~ 168 (411)
|...+|.+++-+.
T Consensus 78 T~eavA~a~g~~L 90 (252)
T PRK03670 78 TMLAVAKALGREL 90 (252)
T ss_pred HHHHHHHHHCCCC
T ss_conf 8999999839982
No 205
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism]
Probab=79.81 E-value=4.4 Score=20.47 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=17.2
Q ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 99996678667855799999999867982999
Q gi|254780873|r 347 KISAIGIGMQSYAGVASAFFLCLAEKGINIKA 378 (411)
Q Consensus 347 ~ISvVG~gm~~~~Giaakif~aL~~~~InI~~ 378 (411)
.+.|+| .+.|||..++..-|...+|||+-
T Consensus 94 ~v~v~a---~DrpgIv~~~T~lf~~~~inie~ 122 (176)
T COG2716 94 WVYVDA---NDRPGIVEEFTALFDGHGINIEN 122 (176)
T ss_pred EEEEEE---CCCCCHHHHHHHHHHHCCCCHHH
T ss_conf 999971---68835899999998646986555
No 206
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=79.72 E-value=4.8 Score=20.18 Aligned_cols=58 Identities=22% Similarity=0.270 Sum_probs=32.0
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHHH
Q ss_conf 500048410001455412850111234432222333101212302---47766887898886
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---SLEKALAVLSDNKE 332 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---d~~~~~~~L~~~~~ 332 (411)
+++.||.+.++++.|+++|||.-.|-+-... ...-...|.++=+ +-.+..++|+++..
T Consensus 8 ~~~~pGsL~~~L~~f~~~~iNLtkIeSRP~~-~~~~~Y~F~vd~~g~~~d~~~~~al~~l~~ 68 (80)
T cd04905 8 LPNKPGALYDVLGVFAERGINLTKIESRPSK-GGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEEECC-CCCCEEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 8997858999999999879767999967638-998449999998558798899999999998
No 207
>PRK08652 acetylornithine deacetylase; Provisional
Probab=78.73 E-value=5.2 Score=19.98 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 48999999986148998899999983129999999999984399863
Q gi|254780873|r 47 TDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAI 93 (411)
Q Consensus 47 Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~ 93 (411)
|+++++|++++-..+++. --|.--+..++.+|++.|++..
T Consensus 1 ~er~~ell~~Lv~i~S~s-------g~E~~~a~~l~~~l~~~G~~~~ 40 (349)
T PRK08652 1 TERAKELLKQLLKIPSPT-------GSEDRIALYIMEFLHSLGYDVH 40 (349)
T ss_pred CHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCEEE
T ss_conf 978999999981999919-------4889999999999997799489
No 208
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=78.27 E-value=1.1 Score=24.38 Aligned_cols=27 Identities=33% Similarity=0.428 Sum_probs=22.6
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCC
Q ss_conf 000484100014554128501112344
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQN 301 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs 301 (411)
.|.||..+++-+.|++++|||-.+.-+
T Consensus 7 ~D~PGvIg~v~~~Lg~~~INIa~m~l~ 33 (73)
T cd04902 7 TDRPGVIGKVGTILGEAGINIAGMQVG 33 (73)
T ss_pred CCCCCCHHHHHHHHHHCCCCHHHHHHC
T ss_conf 698992899999998709778884325
No 209
>TIGR01761 thiaz-red thiazolinyl imide reductase; InterPro: IPR010091 This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclised to a thiazoline ring containing an imide double bond. Examples include yersiniabactin and pyochelin. Yersiniabactin is a virulence factor secreted by Yersinia pestis in iron-deficient microenvironments, in order to scavenge ferric ions . .
Probab=77.21 E-value=5.7 Score=19.69 Aligned_cols=94 Identities=20% Similarity=0.229 Sum_probs=43.7
Q ss_pred ECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCC---CCCCCEECCCCHHHHHHHHHCCCCCH-----HHH----H
Q ss_conf 30686242899999884734556534614402458421---23441105679999999884031101-----378----8
Q gi|254780873|r 148 LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRI---EPKAHLMKKISFEEMLEMSSLGAKVM-----QVR----S 215 (411)
Q Consensus 148 lgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~---v~~a~~i~~lsy~Ea~eLa~~Gakvl-----hp~----~ 215 (411)
|+|| |.-|= .+|.+++ +.||+.||- .+.|+++ |-.......---+=|.-|=.-|..|| ||+ .
T Consensus 44 LAqG-S~RSR-~LA~~lG---vpLy~~ve~-lp~~~~~ACvvvRSa~~Gg~G~~LA~aLL~RGi~VLqEHPl~p~d~~~L 117 (378)
T TIGR01761 44 LAQG-SERSR-ALAHRLG---VPLYSEVEE-LPDDIDIACVVVRSAIVGGKGSELARALLKRGIHVLQEHPLHPEDIAEL 117 (378)
T ss_pred EHHC-CHHHH-HHHHHHC---CCCCCCHHH-CCCCCCEEEEEEEEEEECCCCHHHHHHHHHCCCEEEECCCCCHHHHHHH
T ss_conf 0010-36899-9999809---841067100-4688755588852253179725899999856751563289887789999
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 76433138526761123777776543545454210
Q gi|254780873|r 216 VELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGED 250 (411)
Q Consensus 216 ~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~ 250 (411)
.+.|.+.|=--.| |||.|+- | ..-++|...++
T Consensus 118 ~~lA~~~Gr~Y~v-NTFYPh~-P-Av~~Fi~~~~q 149 (378)
T TIGR01761 118 LRLAERQGRRYLV-NTFYPHL-P-AVRRFIEYARQ 149 (378)
T ss_pred HHHHHHCCCEEEE-CCCCCCC-H-HHHHHHHHHHH
T ss_conf 9999970986642-0677873-3-78999999999
No 210
>PRK05111 acetylornithine deacetylase; Provisional
Probab=76.54 E-value=3.3 Score=21.27 Aligned_cols=104 Identities=17% Similarity=0.150 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCHH
Q ss_conf 89999999861489988----99999983129999999999984399863567332455121335-52000123621003
Q gi|254780873|r 48 DRLAELCRQVTSIDNAR----ERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLH-GMARICRVDEKKIV 122 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~----~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~-~~a~~~~~~~~~l~ 122 (411)
+.|+++.+++-..++.. ..|. |++--+.+++.+|++.|+..........+ +.+ .-+++..... .+
T Consensus 5 ~~~iell~~LV~ipSvs~~e~~~d~----~~~~~~~~l~~~l~~~G~~ve~~~~~~~~----~~~Nvia~~g~g~~-~l- 74 (383)
T PRK05111 5 PSFIEIYRALIATPSISATEPALDQ----SNRAVIDLLAGWFEDLGFNVEIQPVPGTR----GKFNLLASLGSGEG-GL- 74 (383)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCC----HHHHHHHHHHHHHHHCCCEEEEEECCCCC----CCEEEEEEECCCCC-EE-
T ss_conf 6999999999589997987655340----48999999999999789958999758999----83479999679997-39-
Q ss_pred HHHHHC---CEEEEEC------CCCCCCCCCEEEECCCCCCHHHHHHHHHHCH
Q ss_conf 343106---8058603------4333556842443068624289999988473
Q gi|254780873|r 123 THLKKK---QVVVITG------FQGLSHDNSVTTLGRGGSDTSAVAIAAAIKA 166 (411)
Q Consensus 123 ~~l~~~---~v~v~~G------f~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A 166 (411)
+-.+ .||+=+| |-+.-.+|. .+|||-+|.-+.+ |+++.|
T Consensus 75 --~l~gH~DtVP~~~~~W~~dPf~~~~~dg~--lyGRGa~DmKg~~-Aa~l~A 122 (383)
T PRK05111 75 --LLAGHTDTVPFDEGRWTRDPFTLTEHDGK--LYGLGTADMKGFF-AFILEA 122 (383)
T ss_pred --EEECCCCCCCCCCCCCCCCCCCEEEECCE--EECCCCCCCCCHH-HHHHHH
T ss_conf --99814165899988566799616988998--9817856551449-999999
No 211
>cd04871 ACT_PSP_2 ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_2 CD includes the second of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains
Probab=76.05 E-value=2.8 Score=21.78 Aligned_cols=67 Identities=19% Similarity=0.174 Sum_probs=35.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCC-------CCCCCCCEEECCH--HHHHHHHHHHHHHHHHCCC
Q ss_conf 12775000484100014554128501112344322-------2233310121230--2477668878988860596
Q gi|254780873|r 270 SLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSE-------DGQYVDITFTTPS--SSLEKALAVLSDNKENIGY 336 (411)
Q Consensus 270 ti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~-------~~~~~~Isf~i~~--~d~~~~~~~L~~~~~~~~~ 336 (411)
|+-+-+-.+.-++++-..++++|.|||.|..-+.. ......+-|.+.. .|.+.....|-++-.++++
T Consensus 3 TlLgr~lta~~la~Vs~~ia~~glNID~I~RLSgr~~l~~~~~~p~aciE~svrG~~~d~~~lr~~l~~la~~l~v 78 (84)
T cd04871 3 TLLGRPLTAEQLAAVTRVVADQGLNIDRIRRLSGRVPLEEQDDSPKACVEFSVRGQPADLEALRAALLELASELNV 78 (84)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 9965979999999999999976999667861557765545678960899999980578889999999998877297
No 212
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=75.24 E-value=4 Score=20.73 Aligned_cols=59 Identities=22% Similarity=0.232 Sum_probs=34.4
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHHHH
Q ss_conf 500048410001455412850111234432222333101212302---477668878988860
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---SLEKALAVLSDNKEN 333 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---d~~~~~~~L~~~~~~ 333 (411)
+++.||-++++++.|++++||.-.|-+-.+.. ..-...|.++=+ +-.+...+|+++.+.
T Consensus 6 ~~~~pGaL~~~L~~F~~~~iNlt~IeSRP~~~-~~~~y~F~id~eg~~~~~~~~~~l~~l~~~ 67 (75)
T cd04880 6 LKNKPGALAKALKVFAERGINLTKIESRPSRK-GLWEYEFFVDFEGHIDDPDVKEALEELKRV 67 (75)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEEECCC-CCCEEEEEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 68978789999999998896679999577499-995699999971685978999999999984
No 213
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=74.95 E-value=2.3 Score=22.35 Aligned_cols=58 Identities=26% Similarity=0.362 Sum_probs=39.4
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEE-EEEECCCEEEEEE---CHHHHHHHHHHHHH
Q ss_conf 9169999667866785579999999986798299-9970784899997---08899999999998
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIK-AITTSEIKISVLI---DSAYTELAVRSLHS 404 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~-~issSe~~IS~VV---~~~d~~~Av~~LH~ 404 (411)
....++++= ++.||+.+++.+.|+++++||. |+..|.-.+-+.+ +++..+..++.|.+
T Consensus 337 ~~~Ri~~~h---~N~Pg~l~~i~~~l~~~~~NI~~~~n~s~~~~aY~i~D~~~~~~~~~~~~l~~ 398 (409)
T PRK11790 337 GGHRLLHIH---ENRPGVLTAINQIFAEQGINIAAQYLQTDAEIGYVVIDVDADDSEEALEALKA 398 (409)
T ss_pred CCEEEEEEE---CCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 870699980---79875899999999876999889862067765499997888885999999984
No 214
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.51 E-value=4.3 Score=20.50 Aligned_cols=62 Identities=19% Similarity=0.239 Sum_probs=40.7
Q ss_pred CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH--HHHHHHHHHHHHHHHCC
Q ss_conf 7500048410001455412850111234432222333101212302--47766887898886059
Q gi|254780873|r 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS--SLEKALAVLSDNKENIG 335 (411)
Q Consensus 273 ~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~--d~~~~~~~L~~~~~~~~ 335 (411)
.+.++||-+++++++|++++||.-.|-+-.+... .-...|.++=+ .-+++..++..+++..+
T Consensus 20 s~~~~~GaL~~~L~~F~~~~INLt~IESRPsk~~-~~eY~FfVD~e~~~~~~l~~~i~~Lr~~~~ 83 (90)
T cd04931 20 SLKEEVGALAKVLRLFEEKDINLTHIESRPSRLN-KDEYEFFINLDKKSAPALDPIIKSLRNDIG 83 (90)
T ss_pred EECCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC-CCEEEEEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf 9389767799999999987967478876748999-960899999238875779999999998559
No 215
>PRK05294 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=74.49 E-value=6.7 Score=19.22 Aligned_cols=11 Identities=36% Similarity=0.341 Sum_probs=3.9
Q ss_pred HHHCCCCEECC
Q ss_conf 54128501112
Q gi|254780873|r 288 LAEAHINIDMI 298 (411)
Q Consensus 288 La~~~I~VdmI 298 (411)
|.+.|+...||
T Consensus 583 lk~~G~~~imI 593 (1063)
T PRK05294 583 LREAGYETIMV 593 (1063)
T ss_pred HHHCCCEEEEE
T ss_conf 99659815895
No 216
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=73.30 E-value=6.5 Score=19.33 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=21.3
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCC
Q ss_conf 0111234662000127750004841000145541285011123
Q gi|254780873|r 257 ITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299 (411)
Q Consensus 257 Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~ 299 (411)
+++-+....+.+|.+ |..+.||.| ....|+...+++.+|.
T Consensus 255 ~EA~sa~nGIGlVkL--MGR~SGfIA-~~A~LAs~~vd~cLIP 294 (486)
T PTZ00286 255 AEAVSLNYGVGIVKL--MGRESGFIA-AQTAVASAQANICLIP 294 (486)
T ss_pred HHHHCCCCCEEEEEE--CCCCCCHHH-HHHHHCCCCCCEEEEC
T ss_conf 875235685189997--255512899-8877513877789924
No 217
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.17 E-value=2.3 Score=22.41 Aligned_cols=25 Identities=40% Similarity=0.604 Sum_probs=21.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCC
Q ss_conf 0004841000145541285011123
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMII 299 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~ 299 (411)
.|.||..+++-+.|++++|||..+.
T Consensus 7 ~D~PG~Ig~i~~~L~~~~INIa~m~ 31 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMR 31 (71)
T ss_pred CCCCCCHHHHHHHHHHCCCCCHHEE
T ss_conf 4869919999999986596803618
No 218
>PRK00549 competence damage-inducible protein A; Provisional
Probab=72.76 E-value=6.3 Score=19.39 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=18.3
Q ss_pred HHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHH
Q ss_conf 03343106805860343335568424430686242899999884734
Q gi|254780873|r 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKAD 167 (411)
Q Consensus 121 l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~ 167 (411)
+...++...++|++|-.|-+.+ |.|.-.+|.+++-.
T Consensus 53 l~~a~~r~d~vi~tGGLGPT~D-----------DlT~eava~~~g~~ 88 (413)
T PRK00549 53 LEIAEERSDLIITTGGLGPTKD-----------DLTKETVAKFLGRE 88 (413)
T ss_pred HHHHHHCCCEEEEECCCCCCCC-----------HHHHHHHHHHHCCC
T ss_conf 9999745999999088489984-----------45899999995998
No 219
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=72.48 E-value=6.8 Score=19.18 Aligned_cols=11 Identities=9% Similarity=-0.082 Sum_probs=4.9
Q ss_pred CEEEEECCEEE
Q ss_conf 15897489169
Q gi|254780873|r 337 DVIQHEDNLVK 347 (411)
Q Consensus 337 ~~I~~~~~~a~ 347 (411)
++|.+..+.++
T Consensus 274 ~rv~v~~~kTV 284 (287)
T PRK13011 274 RRVFLNGNRTV 284 (287)
T ss_pred CEEEEECCEEE
T ss_conf 92999899989
No 220
>PRK06545 prephenate dehydrogenase; Validated
Probab=71.15 E-value=8 Score=18.71 Aligned_cols=57 Identities=21% Similarity=0.253 Sum_probs=36.2
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE---C--CCEEEEE---ECHHHHHHHHHHHH
Q ss_conf 91699996678667855799999999867982999970---7--8489999---70889999999999
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT---S--EIKISVL---IDSAYTELAVRSLH 403 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss---S--e~~IS~V---V~~~d~~~Av~~LH 403 (411)
++.-+.| .+.+.||..+++|..|++++|||.-+.- . +....+. =++.+..+|...++
T Consensus 287 ~~~~l~v---~i~D~pG~la~l~~~l~~~~ini~di~i~h~~re~~ggv~~~~~~~~~~~~~a~~~~~ 351 (357)
T PRK06545 287 SFYDLYV---DVPDEPGVIAKVTRILAEEGISIENLRIELETREDIGGVLRISFPNADDRERAALALR 351 (357)
T ss_pred CCEEEEE---ECCCCCCHHHHHHHHHHHCCCCEECCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHC
T ss_conf 6189998---7899998799999999986987267778764787657789996698789999999976
No 221
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I; InterPro: IPR011913 RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in Escherichia coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (IPR011914 from INTERPRO) adds ADP to yield ADP-D-glycero-D-manno-heptose .; GO: 0016773 phosphotransferase activity alcohol group as acceptor, 0016779 nucleotidyltransferase activity, 0005975 carbohydrate metabolic process.
Probab=70.96 E-value=4.3 Score=20.53 Aligned_cols=148 Identities=20% Similarity=0.276 Sum_probs=85.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCC--------CCCCC-CCEECCCCHHHHHH-----------
Q ss_conf 84244306862428999998847345565346144024584--------21234-41105679999999-----------
Q gi|254780873|r 143 NSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP--------RIEPK-AHLMKKISFEEMLE----------- 202 (411)
Q Consensus 143 g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDP--------r~v~~-a~~i~~lsy~Ea~e----------- 202 (411)
+++..+|.=|-|..+-.+...|++..+..|++ +-.|| |++.. -+=+=++.|||-..
T Consensus 62 a~v~l~GvVG~D~~g~~L~~ll~~~g~~~~~~----l~~d~~rpT~~K~Rv~a~~~QQllR~D~E~~~~~~~~~~~~L~~ 137 (321)
T TIGR02198 62 ARVVLVGVVGDDEAGKALEALLKEEGIDDTSG----LIRDKSRPTTTKTRVLARANQQLLRVDFEERKPINAEEEARLLA 137 (321)
T ss_pred CEEEEEEEECCCHHHHHHHHHHHHCCCCCCCC----EEEECCCCCEEEEEEEECCCEEEEEEEEECCCCCCHHHHHHHHH
T ss_conf 45899977336838999999997458643300----27768989448888860465058997410277689778999999
Q ss_pred -------------HHHCCCCCH----HHHHHHHHHHCCCEEEEECCCCCCCC---CCCCCCCCCCCCCCCCCCCCCC---
Q ss_conf -------------884031101----37887643313852676112377777---6543545454210122231011---
Q gi|254780873|r 203 -------------MSSLGAKVM----QVRSVELAMLYKMCLFVRSSFEDHGQ---QEQLGTLICSGEDIMEKKVITG--- 259 (411)
Q Consensus 203 -------------La~~Gakvl----hp~~~~~~~~~~ipi~i~ntf~~~~~---~~~~GT~I~~~~~~~~~~~Vk~--- 259 (411)
||-||=-|| ...-|..|+++++|+.| ||++. .-..=|+|+++.... ..+.|
T Consensus 138 ~~~~~l~~~d~VvLSDYaKGvLt~~v~~~~I~~Ar~~~~pVlV----DPKg~df~~Y~GAtl~TPN~~E~--~~avG~~~ 211 (321)
T TIGR02198 138 AIKEQLASADAVVLSDYAKGVLTPSVVQEVIAAAREAGKPVLV----DPKGKDFSRYRGATLITPNRKEA--EAAVGIKF 211 (321)
T ss_pred HHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEE----ECCCCCHHHHCCCCCCCCCHHHH--HHHHCCCC
T ss_conf 9999723287899986687635857899999999966891998----07876234514664236687999--99858870
Q ss_pred CCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH
Q ss_conf 12346620001277500048410001455412850111234432222333101212302
Q gi|254780873|r 260 IAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS 318 (411)
Q Consensus 260 Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~ 318 (411)
+.++++.-++ .+--..+.++++.--+||+| |+| ||+.-++.
T Consensus 212 ~~~~~~~~~~------------~aa~~L~~~~~l~alLvTRs--E~G----MtL~~~~~ 252 (321)
T TIGR02198 212 IACENEAELV------------KAAEKLLEELDLEALLVTRS--EKG----MTLFTREG 252 (321)
T ss_pred HHCCCCHHHH------------HHHHHHHHHCCCCEEEEEEC--CCC----CEEECCCC
T ss_conf 1105817899------------99999999709967999507--762----06676899
No 222
>PRK03673 competence damage-inducible protein A; Provisional
Probab=70.78 E-value=6.7 Score=19.22 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=7.5
Q ss_pred HHHCCEEEEECCCCCCCC
Q ss_conf 310680586034333556
Q gi|254780873|r 125 LKKKQVVVITGFQGLSHD 142 (411)
Q Consensus 125 l~~~~v~v~~Gf~g~~~~ 142 (411)
+....++|++|-.|-+.+
T Consensus 58 ~~r~DlVI~tGGLGPT~D 75 (396)
T PRK03673 58 SQHADVLIVNGGLGPTSD 75 (396)
T ss_pred HHCCCEEEECCCCCCCCC
T ss_conf 614999999388489983
No 223
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=70.16 E-value=3.4 Score=21.23 Aligned_cols=63 Identities=29% Similarity=0.216 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCC--CCCEEECCHH--HHHHHHHHHHHHHHH
Q ss_conf 127750004841000145541285011123443222233--3101212302--477668878988860
Q gi|254780873|r 270 SLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQY--VDITFTTPSS--SLEKALAVLSDNKEN 333 (411)
Q Consensus 270 ti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~--~~Isf~i~~~--d~~~~~~~L~~~~~~ 333 (411)
++++ |+.+|+.++|-+.|+++|-||.-..|-..+.+.. .-+.|..+.. +.+...+.+.++..+
T Consensus 3 ~i~C-pD~~GIVa~Vs~~l~~~g~nI~e~~q~~D~~~~~FFmR~~f~~~~~~~~~~~l~~~f~~ia~~ 69 (74)
T cd04875 3 TLSC-PDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELEGFDLSREALEAAFAPVAAE 69 (74)
T ss_pred EEEC-CCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9978-998881999999999879988662377369898489999997589887999999999999997
No 224
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=69.47 E-value=7.2 Score=19.01 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHH
Q ss_conf 99999999984399863567332455121335520001236210033431068058603433355684244306862428
Q gi|254780873|r 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTS 156 (411)
Q Consensus 77 s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~t 156 (411)
++..++.+|..+|++-.... .+-|+. .++ .+.+..+.+...++|++|-+|-|.+ |.|
T Consensus 22 Na~~la~~L~~~G~~v~~~~-----~VgD~~------~~I-~~~l~~a~~r~D~vI~tGGLGPT~D-----------DiT 78 (255)
T COG1058 22 NAAFLADELTELGVDLARIT-----TVGDNP------DRI-VEALREASERADVVITTGGLGPTHD-----------DLT 78 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEE-----ECCCCH------HHH-HHHHHHHHHCCCEEEECCCCCCCCC-----------HHH
T ss_conf 29999999996496189999-----639999------999-9999999718998998798589962-----------768
Q ss_pred HHHHHHHHCHHHH
Q ss_conf 9999988473455
Q gi|254780873|r 157 AVAIAAAIKADRC 169 (411)
Q Consensus 157 A~~ia~~l~A~~~ 169 (411)
+=.+|.+++-+.+
T Consensus 79 ~e~vAka~g~~lv 91 (255)
T COG1058 79 AEAVAKALGRPLV 91 (255)
T ss_pred HHHHHHHHCCCCC
T ss_conf 9999998299856
No 225
>PRK03381 PII uridylyl-transferase; Provisional
Probab=69.46 E-value=8.7 Score=18.47 Aligned_cols=114 Identities=13% Similarity=0.140 Sum_probs=66.2
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH-----HHHH----HHHHHH-------HHHHH----
Q ss_conf 500048410001455412850111234432222333101212302-----4776----688789-------88860----
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS-----SLEK----ALAVLS-------DNKEN---- 333 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~-----d~~~----~~~~L~-------~~~~~---- 333 (411)
.++.||..+++...|+.+++||---.- .+.++..++ +|.+... +... +..++. .+.+.
T Consensus 607 ~~DrpgLfa~iag~La~~~l~I~~A~i-~t~dg~ald-~f~V~~~~g~~~~~~~~~~~l~~al~~~l~~~~~l~~r~~~~ 684 (781)
T PRK03381 607 APDRRGLLSKAAGVLALNRLRVRSASA-NSHDGVALL-EFVVSPPFGSPPAAALLRQDLVRALDGDLDVLARLAKREADA 684 (781)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEE-ECCCCCEEE-EEEECCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCC
T ss_conf 468754599999999867993588999-726990899-999716778976668999999999826532134542010013
Q ss_pred --------CC-CCEEEEEC----CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE--EEECCCE--EEEEECH
Q ss_conf --------59-61589748----91699996678667855799999999867982999--9707848--9999708
Q gi|254780873|r 334 --------IG-YDVIQHED----NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA--ITTSEIK--ISVLIDS 392 (411)
Q Consensus 334 --------~~-~~~I~~~~----~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~--issSe~~--IS~VV~~ 392 (411)
.. .-.|.+.+ +..+|.|.. .+.||..+++..+|.+.|++|.. |+|-.-+ =.|.|.+
T Consensus 685 ~~~~~~~~~~~~prV~~d~~~s~~~TvlEV~a---~DRpGLL~~Ia~~l~~~gl~I~~AkI~T~Gerv~DvFyVtd 757 (781)
T PRK03381 685 AAAVPVTRTPAPPRVLWLDTASPDATVLEVRA---ADRAGLLARLTRALEGAGVDVRWAKVNTLGSDAVDAFYVTE 757 (781)
T ss_pred CCCCCCCCCCCCCEEEECCCCCCCEEEEEEEE---CCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEEEC
T ss_conf 55654567999987998888888858999996---88177999999999987987988796268860899999977
No 226
>TIGR01127 ilvA_1Cterm threonine dehydratase; InterPro: IPR005789 Serine and threonine dehydratases , are functionally and structurally related pyridoxal-phosphate dependent enzymes. L-serine dehydratase () and D-serine dehydratase () catalyze the dehydratation of L-serine (respectively D-serine) into ammonia and pyruvate. Threonine dehydratase () (TDH) catalyzes the dehydratation of threonine into alpha-ketobutarate and ammonia. In Escherichia coli and other microorganisms, two classes of TDH are known to exist. One is involved in the biosynthesis of isoleucine, the other in hydroxamino acid catabolism. Threonine synthase () is also a pyridoxal-phosphate enzyme, it catalyzes the transformation of homoserine-phosphate into threonine. It has been shown that threonine synthase is distantly related to the serine/threonine dehydratases. In all these enzymes, the pyridoxal-phosphate group is attached to a lysine residue. A form of threonine dehydratase with two copies of the C-terminal domain is described by . This model describes a phylogenetically distinct which branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any domain. Many members of this model are found in species with other isoleucine biosynthetic enzymes.; GO: 0004794 L-threonine ammonia-lyase activity.
Probab=68.94 E-value=5.6 Score=19.72 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=29.1
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEEE---------CCCEEEEEEC---HHHHHHHHHHHHH
Q ss_conf 67855799999999867982999970---------7848999970---8899999999998
Q gi|254780873|r 356 QSYAGVASAFFLCLAEKGINIKAITT---------SEIKISVLID---SAYTELAVRSLHS 404 (411)
Q Consensus 356 ~~~~Giaakif~aL~~~~InI~~iss---------Se~~IS~VV~---~~d~~~Av~~LH~ 404 (411)
.+.||-+-++..++++++-||..|.- ...+|++.++ ++..++-++.|.+
T Consensus 314 ~D~PG~L~~ll~~~A~~~aNi~~i~hDR~~~~~~~G~a~v~~~LEt~g~~H~~ei~~~L~~ 374 (381)
T TIGR01127 314 PDRPGALYKLLEVIAEERANIVKIEHDRLSKEIPPGFAKVELELETRGKEHLDEILKVLRD 374 (381)
T ss_pred ECCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHH
T ss_conf 2389866999999998169789999737577778675389999840886899999999976
No 227
>TIGR01910 DapE-ArgE acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase; InterPro: IPR010182 This group of sequences contains annotations for both acetylornithine deacetylase and succinyl-diaminopimelate desuccinylase, but does not contain any members with experimental characterization. Bacillus, Staphylococcus and Sulfolobus species contain multiple hits to this subfamily and each may have a separate activity. Determining which is which must await further laboratory research.; GO: 0009014 succinyl-diaminopimelate desuccinylase activity, 0046872 metal ion binding, 0009085 lysine biosynthetic process.
Probab=68.56 E-value=9 Score=18.35 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHH--CCEEEEECCCCCCCCCCE------
Q ss_conf 9999999999843998635673324551213355200--012362100334310--680586034333556842------
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKK--KQVVVITGFQGLSHDNSV------ 145 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~--~~~~~~~~l~~~l~~--~~v~v~~Gf~g~~~~g~~------ 145 (411)
--+..+..+|+++|++....+..+--......|+..+ +... ...+...... +++.++.|.+=.-+.|++
T Consensus 22 ~~~~~i~~lL~~~G~~~~~~~~~~~~~~~~~~F~p~~~DF~~~-~~~~~~~~g~~~~~~L~~ngH~DVVp~Gd~~~W~~d 100 (427)
T TIGR01910 22 TIANYIKDLLREFGFEVDVIEITDDRLKKLSRFGPIRSDFQKK-RKIVVKEIGNGREKSLILNGHYDVVPAGDVEKWKTD 100 (427)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCCCCCHHCCCCCCCCHHHHCC-CCEEEEEECCCCCCEEEEECCEEECCCCCCCCCCCC
T ss_conf 7999999999853970588740767500046778740010114-612687314789707999733412038852257789
Q ss_pred ---------EEECCCCCCHHHHHHHHHHCHHHH
Q ss_conf ---------443068624289999988473455
Q gi|254780873|r 146 ---------TTLGRGGSDTSAVAIAAAIKADRC 169 (411)
Q Consensus 146 ---------ttlgRGGSD~tA~~ia~~l~A~~~ 169 (411)
-.+|||-||.=+.++|..+=-+.+
T Consensus 101 PF~~~ekdGK~yGRGa~DMKgG~~a~~~A~~~l 133 (427)
T TIGR01910 101 PFKPVEKDGKLYGRGATDMKGGLVALLYALKAL 133 (427)
T ss_pred CCCCEEECCEEEECCCCCHHHHHHHHHHHHHHH
T ss_conf 973378768077556651268999999999999
No 228
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=67.78 E-value=8.9 Score=18.39 Aligned_cols=87 Identities=13% Similarity=0.159 Sum_probs=52.6
Q ss_pred EECCHHHHHHHHHHHHHHHHHCCCCEEEEECC-----EEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECC----
Q ss_conf 21230247766887898886059615897489-----169999667866785579999999986798299997078----
Q gi|254780873|r 313 FTTPSSSLEKALAVLSDNKENIGYDVIQHEDN-----LVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSE---- 383 (411)
Q Consensus 313 f~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~-----~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~issSe---- 383 (411)
.+++..|+.++.....+..+++ -++....+ .+-|.+.+ .+.+|+.+.+.++|++.++||..+++..
T Consensus 592 i~iHr~dC~~~~~~~~~~per~--i~v~W~~~~~~~f~~~i~v~~---~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~ 666 (701)
T COG0317 592 ISIHRQDCPNFLQLAGHAPERV--IDVSWGPEYGQVYPVDIEIRA---YDRSGLLRDVSQVLANEKINVLGVNTRSDKDQ 666 (701)
T ss_pred EEEEHHCCHHHHHHHHCCCCEE--EEEEECCCCCCCEEEEEEEEE---CCCCCHHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 7985512762887654486517--997835888863489999998---04656699999999857883699641236786
Q ss_pred ---CEEEEEECH-HHHHHHHHHHHH
Q ss_conf ---489999708-899999999998
Q gi|254780873|r 384 ---IKISVLIDS-AYTELAVRSLHS 404 (411)
Q Consensus 384 ---~~IS~VV~~-~d~~~Av~~LH~ 404 (411)
+.+.+-|.. .+..+.+..|.+
T Consensus 667 ~~~~~~~i~v~n~~~L~~i~~~l~~ 691 (701)
T COG0317 667 FATMQFTIEVKNLNHLGRVLARLKQ 691 (701)
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 3799999997868999999999855
No 229
>TIGR00174 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) .; GO: 0004811 tRNA isopentenyltransferase activity, 0005524 ATP binding, 0008033 tRNA processing.
Probab=67.55 E-value=1.8 Score=23.13 Aligned_cols=67 Identities=22% Similarity=0.335 Sum_probs=36.9
Q ss_pred HHHHCHHHHHHHCCHHHHEECCCCC-----CCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHH-HHHCCCEEEEECC
Q ss_conf 9884734556534614402458421-----234411056799999998840311013788764-3313852676112
Q gi|254780873|r 161 AAAIKADRCDIYTDVCGIYTTDPRI-----EPKAHLMKKISFEEMLEMSSLGAKVMQVRSVEL-AMLYKMCLFVRSS 231 (411)
Q Consensus 161 a~~l~A~~~~i~tdV~Gi~taDPr~-----v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~-~~~~~ipi~i~nt 231 (411)
|..+++|+.+||||.| |=||=|-. +|+ +.|+.+.++|.-..+.|-..++ ..|+- ..+..||+.|.=|
T Consensus 25 aEiI~~DS~qiYK~~d-IgtaKp~~~e~~~ipH-~l~Dildp~e~y~~~~F~~~~~--~~~~~i~~~Gkipl~VGGT 97 (307)
T TIGR00174 25 AEIISVDSMQIYKGMD-IGTAKPSLQERKGIPH-HLIDILDPSESYSAADFQTQAL--NAIADITARGKIPLLVGGT 97 (307)
T ss_pred EEEEECCCHHHHCCCC-CCCCCCCHHHHCCCCC-EEEECCCCCCCCCCHHHHHHHH--HHHHHHHHCCCCEEEECCH
T ss_conf 5787435023223787-5357889687534981-5851347120037088999999--9999998569834886857
No 230
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=67.16 E-value=9.6 Score=18.16 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=13.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCEEC
Q ss_conf 00048410001455412850111
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDM 297 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vdm 297 (411)
+|.||++++|...|++.+++|..
T Consensus 8 ~DrpGLL~~i~~~l~~~~l~I~~ 30 (70)
T cd04899 8 LDRPGLLADVTRVLAELGLNIHS 30 (70)
T ss_pred CCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 89555999999999988938999
No 231
>pfam04359 DUF493 Protein of unknown function (DUF493).
Probab=65.94 E-value=6.1 Score=19.50 Aligned_cols=57 Identities=14% Similarity=0.168 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHCC--CCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 00484100014554128--5011123443222233310121230247766887898886
Q gi|254780873|r 276 DHPGISASIFSPLAEAH--INIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 276 ~~~g~~a~If~~La~~~--I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
+.++|...|++++.++- .+-..+.+..|..|.++++++++--...+++..+-+++..
T Consensus 24 ~~~~f~~~V~~iv~~h~~~~~~~~v~~r~Ss~GkY~Svtv~i~a~s~~ql~~iy~~L~~ 82 (90)
T pfam04359 24 AGDELVDAVVEVVQRHAPGFDDYTPTVKPSSKGKYVSVSVTITATSEEQLEALYQELSA 82 (90)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCEEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 87168999999999977999833237864689848999999998899999999999831
No 232
>PRK11899 prephenate dehydratase; Provisional
Probab=65.29 E-value=9.8 Score=18.09 Aligned_cols=134 Identities=9% Similarity=0.054 Sum_probs=63.2
Q ss_pred CCEECCCCHHHHHHHHH----CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 41105679999999884----03110137887643313852676112377777654354545421012223101112346
Q gi|254780873|r 189 AHLMKKISFEEMLEMSS----LGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTK 264 (411)
Q Consensus 189 a~~i~~lsy~Ea~eLa~----~Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~ 264 (411)
++++..-|-.+|.++.. -++-.+-++ .-+..++.++.-.|.-+...+-+. ==+|......... ...+
T Consensus 122 ~~~~~~~sta~Aa~~v~~~~~~~~AAI~s~--~aa~~ygL~il~~~I~D~~~N~TR-F~vi~k~~~~~~~------~~~~ 192 (284)
T PRK11899 122 LKPVVAADTAGAAREVAERGDPSMAALASR--LAAELYGLDILAENVEDEDHNTTR-FVVLSREALWAAR------GDGP 192 (284)
T ss_pred CCEEEECCCHHHHHHHHHCCCCCEEECCHH--HHHHHCCCCEECCCCCCCCCCEEE-EEEEECCCCCCCC------CCCC
T ss_conf 824994380999999996699870110608--565224973350467665553288-9999748778988------8998
Q ss_pred CCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHHHH
Q ss_conf 620001277500048410001455412850111234432222333101212302---477668878988860
Q gi|254780873|r 265 DEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---SLEKALAVLSDNKEN 333 (411)
Q Consensus 265 ~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---d~~~~~~~L~~~~~~ 333 (411)
+.+.+- -.+.+.||-+.++++.|++++||.-.|-+- +..+......|.++-+ +-+.+..+|+++.+.
T Consensus 193 ~~Tsl~-~~~~d~pGaL~~vL~~Fa~~~INLtkIeSR-P~~~~~~~Y~F~iD~egh~~d~~~~~al~~l~~~ 262 (284)
T PRK11899 193 MVTTFV-FRVRNIPAALYKALGGFATNGVNMTKLESY-MVGGSFTATQFYADIEGHPEDRNVALALEELRFF 262 (284)
T ss_pred CEEEEE-EECCCCCCHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 457899-973898619999999999879875688501-2599984399999960687989999999999985
No 233
>pfam11713 Peptidase_C80 Peptidase C80 family. This family belongs to cysteine peptidase family C80.
Probab=65.28 E-value=10 Score=17.93 Aligned_cols=40 Identities=30% Similarity=0.527 Sum_probs=31.2
Q ss_pred EEEEECCCCCCC-----CCHHHHHHHHHHHCCCEEEEEE-ECCCEE
Q ss_conf 999966786678-----5579999999986798299997-078489
Q gi|254780873|r 347 KISAIGIGMQSY-----AGVASAFFLCLAEKGINIKAIT-TSEIKI 386 (411)
Q Consensus 347 ~ISvVG~gm~~~-----~Giaakif~aL~~~~InI~~is-sSe~~I 386 (411)
.|+++|+.|-+. .+.+.++..+|.+++++....+ ++++.|
T Consensus 106 kI~LvGC~l~~~~~~~~~~fa~~f~~~l~~~g~~~~VsA~~~~v~V 151 (160)
T pfam11713 106 KISLVGCSMASADKNSRESFAGKLLQALDDEGISIEVSARQGEVRV 151 (160)
T ss_pred EEEEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEEEEEEE
T ss_conf 7899987435788763211999999999864984148985421688
No 234
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=65.24 E-value=10 Score=17.92 Aligned_cols=30 Identities=27% Similarity=0.401 Sum_probs=20.3
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCC
Q ss_conf 500048410001455412850111234432
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVS 303 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s 303 (411)
+++.||-+..|+..|.+++.+|.-|.++..
T Consensus 6 L~d~pGslk~v~D~Lr~~~~rI~SILTs~~ 35 (72)
T cd04884 6 LEDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred CCCCCCCHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 689998527999999877985999983367
No 235
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=65.23 E-value=10 Score=17.92 Aligned_cols=241 Identities=20% Similarity=0.217 Sum_probs=101.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHCHHHHH-HHCCHHHHEECCC------CCCCCCCEECCC--CHHHHHHHHHCCCCCHHHH
Q ss_conf 424430686242899999884734556-5346144024584------212344110567--9999999884031101378
Q gi|254780873|r 144 SVTTLGRGGSDTSAVAIAAAIKADRCD-IYTDVCGIYTTDP------RIEPKAHLMKKI--SFEEMLEMSSLGAKVMQVR 214 (411)
Q Consensus 144 ~~ttlgRGGSD~tA~~ia~~l~A~~~~-i~tdV~Gi~taDP------r~v~~a~~i~~l--sy~Ea~eLa~~Gakvlhp~ 214 (411)
.+...+|||-=-..+++ .+|+...+- -..| ||...| .-.||...-|+| |-.||+|-.. +.-.+
T Consensus 223 ~lIN~aRG~iVde~aL~-~AL~~g~i~gAalD---Vf~~EP~~~~pL~~~~nvi~TPHiGasT~EAq~~va----~~~a~ 294 (524)
T PRK13581 223 RIINCARGGIIDEAALA-EALKSGKVAGAALD---VFEKEPATDSPLFGLPNVIVTPHLGASTEEAQENVA----IQVAE 294 (524)
T ss_pred EEEECCCCCEECHHHHH-HHHHCCCCCEEEEE---CCCCCCCCCHHHHCCCCEEECCCCCCCHHHHHHHHH----HHHHH
T ss_conf 69974887605899999-99964997659972---467789997566179988887878765599999999----99999
Q ss_pred HHHHHHHCCCEEEEECCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCC--CCCC-----CCCCHHCC---
Q ss_conf 87643313852676112377777654-------------3545454210122231011--1234-----66200012---
Q gi|254780873|r 215 SVELAMLYKMCLFVRSSFEDHGQQEQ-------------LGTLICSGEDIMEKKVITG--IAYT-----KDEAQISL--- 271 (411)
Q Consensus 215 ~~~~~~~~~ipi~i~ntf~~~~~~~~-------------~GT~I~~~~~~~~~~~Vk~--Is~~-----~~i~~Iti--- 271 (411)
.+.-..+.+.+-..-|. |.-.++. -|.+... .. +..++. |++. .+...++.
T Consensus 295 ~v~~~l~~~~~~~avN~--p~~~~~~~~~~~pyl~Lae~lG~~~~q---l~-~~~~~~i~i~y~G~~~~~~~~~lt~a~l 368 (524)
T PRK13581 295 QVIDALLGGPVPNAVNL--PSVTAEVAEKLKPYLELAEKLGSLAGQ---LT-DGPIKKIEVTYRGELADYDTEPLTAAAL 368 (524)
T ss_pred HHHHHHCCCCCCCEEEC--CCCCHHHHHHHHHHHHHHHHHHHHHHH---HC-CCCCCEEEEEEEEECCCCCCHHHHHHHH
T ss_conf 99999758997742657--878856778778899999999999998---71-5897389999987523344248999999
Q ss_pred CCC-----CCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCC-CCEEECCHHHHHHHH--HHHHHHHH---HCCCCEEE
Q ss_conf 775-----00048410001455412850111234432222333-101212302477668--87898886---05961589
Q gi|254780873|r 272 RRL-----RDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYV-DITFTTPSSSLEKAL--AVLSDNKE---NIGYDVIQ 340 (411)
Q Consensus 272 ~~~-----~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~-~Isf~i~~~d~~~~~--~~L~~~~~---~~~~~~I~ 340 (411)
.++ .+...+... -....+.||.+.-..++.+ +.+. .|+..+..+.-+... .++.+... ++.--.++
T Consensus 369 kG~L~~~~~~~VN~VNA-~~lAkerGI~v~e~k~~~~--~~y~~lI~v~v~~~~~~~~v~GTvf~~~~pRIV~I~g~~vd 445 (524)
T PRK13581 369 KGLLSPVLGERVNYVNA-PLLAKERGIEVEETKSEES--GDYSNLITVTVTTDDGERSVAGTVFGDGEPRIVEINGFRVD 445 (524)
T ss_pred HHHHHHHCCCCCCCCCH-HHHHHHCCCEEEEEECCCC--CCCCCEEEEEEECCCCEEEEEEEEECCCEEEEEEECCEEEE
T ss_conf 99877652254650024-8999975946999975778--88763699999868966999999935990689999999999
Q ss_pred EECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE-----CCCEEEE-EECHHHHHHHHHHHHH
Q ss_conf 74891699996678667855799999999867982999970-----7848999-9708899999999998
Q gi|254780873|r 341 HEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT-----SEIKISV-LIDSAYTELAVRSLHS 404 (411)
Q Consensus 341 ~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss-----Se~~IS~-VV~~~d~~~Av~~LH~ 404 (411)
+...--++ +-.+ .+.||+.+++-+.|++++|||-..+- ....+++ -||+.=-+.+++.|.+
T Consensus 446 ~~p~G~mL--~~~n-~D~PGvIG~VGtiLG~~~INIA~m~lgR~~~gg~Ai~vl~vD~~v~~evl~~l~~ 512 (524)
T PRK13581 446 AKPEGHML--VIRN-RDRPGVIGKIGTLLGEHGINIASMQLGRDEAGGEALMVLSVDDPVPDEVLEELKA 512 (524)
T ss_pred EECCCCEE--EEEE-CCCCCHHHHHHHHHHHCCCCCHHCEECCCCCCCEEEEEEECCCCCCHHHHHHHHC
T ss_conf 85467689--9970-7869714398888865698923357457889974799998799999999999866
No 236
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=64.72 E-value=8.1 Score=18.65 Aligned_cols=69 Identities=23% Similarity=0.330 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999843998635673324551213355200012362100334310680586034333556842443068624
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSD 154 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD 154 (411)
.-+..+++.+|++.|....... ++.|+... -.+.+.+.+++..++|++|=.|...+ |
T Consensus 17 d~n~~~l~~~l~~~G~~~~~~~-----~v~Dd~~~-------i~~~l~~~~~~~DlIittGG~g~g~~-----------D 73 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYV-----IVPDDKEA-------IKEALREALERADLVITTGGTGPGPD-----------D 73 (135)
T ss_pred HHHHHHHHHHHHHCCCEEEEEE-----EECCCHHH-------HHHHHHHHHHCCCEEEECCCCCCCCC-----------C
T ss_conf 2589999999998899899987-----98999999-------99999998414899998288789998-----------6
Q ss_pred HHHHHHHHHHCH
Q ss_conf 289999988473
Q gi|254780873|r 155 TSAVAIAAAIKA 166 (411)
Q Consensus 155 ~tA~~ia~~l~A 166 (411)
+|..+++..++.
T Consensus 74 ~t~~al~~~~~~ 85 (135)
T smart00852 74 VTPEAVAEALGK 85 (135)
T ss_pred CHHHHHHHHCCC
T ss_conf 589999997398
No 237
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=64.07 E-value=11 Score=17.78 Aligned_cols=24 Identities=42% Similarity=0.537 Sum_probs=14.8
Q ss_pred CCCCHHHHHHHHHHCHHHHHHHCC
Q ss_conf 862428999998847345565346
Q gi|254780873|r 151 GGSDTSAVAIAAAIKADRCDIYTD 174 (411)
Q Consensus 151 GGSD~tA~~ia~~l~A~~~~i~td 174 (411)
||.-.+-++.++.-.||+--|--+
T Consensus 91 GGAqVsqVA~GAIsEADRHNiRGE 114 (218)
T COG1707 91 GGAQVSQVARGAISEADRHNIRGE 114 (218)
T ss_pred CCHHHHHHHHHHCCHHHHCCCCCC
T ss_conf 836378998742234453255652
No 238
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA; InterPro: IPR010222 This entry represents HrpA, one of two related but uncharacterised DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterised, is about 800 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity.
Probab=63.15 E-value=5 Score=20.06 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=19.7
Q ss_pred CCCHHHHHHHCCEEEEECCCCCCCCCCEEE-------ECCCCC
Q ss_conf 210033431068058603433355684244-------306862
Q gi|254780873|r 118 EKKIVTHLKKKQVVVITGFQGLSHDNSVTT-------LGRGGS 153 (411)
Q Consensus 118 ~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt-------lgRGGS 153 (411)
.+.|.+++.+++|+|+.| -|.-|+||- ||||--
T Consensus 74 RedI~~AI~~nQVviiAG---ETGSGKTTQLPKICLELGrG~~ 113 (1320)
T TIGR01967 74 REDIAKAIAENQVVIIAG---ETGSGKTTQLPKICLELGRGSR 113 (1320)
T ss_pred HHHHHHHHHHCCEEEEEC---CCCCCCCCCCHHHHHHHCCCCC
T ss_conf 899999998489899972---4487620232167775427876
No 239
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=63.11 E-value=2.3 Score=22.38 Aligned_cols=71 Identities=25% Similarity=0.412 Sum_probs=45.8
Q ss_pred CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--------------ECCCCCCHHHHHHHHHHCHHHHHHHCCH
Q ss_conf 20001236210033431068058603433355684244--------------3068624289999988473455653461
Q gi|254780873|r 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--------------LGRGGSDTSAVAIAAAIKADRCDIYTDV 175 (411)
Q Consensus 110 ~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--------------lgRGGSD~tA~~ia~~l~A~~~~i~tdV 175 (411)
.|++++.+-=.-+..|++..+-|+-||.|.-.+.++.. ||-| .| ++.--.||||+
T Consensus 407 kARFDEE~NI~WAk~LE~AGvhVVyG~~glKtHAKm~lVvRrE~~~lrrY~HlGTG--NY---------n~~TAriYTD~ 475 (696)
T COG0855 407 KARFDEEANIHWAKRLERAGVHVVYGVVGLKTHAKMLLVVRREGGKLRRYVHLGTG--NY---------NPKTARLYTDL 475 (696)
T ss_pred HHHCCHHHHHHHHHHHHHCCCEEEECCCCEEEEEEEEEEEEECCCCEEEEEEECCC--CC---------CCCCEEEEEEC
T ss_conf 21137244158999998679689963455230126999998308827899971477--77---------85643566401
Q ss_pred HHHEECCCCCCCCCCEE
Q ss_conf 44024584212344110
Q gi|254780873|r 176 CGIYTTDPRIEPKAHLM 192 (411)
Q Consensus 176 ~Gi~taDPr~v~~a~~i 192 (411)
|.|||||.+-.+...+
T Consensus 476 -sl~Tad~~i~~Dv~~l 491 (696)
T COG0855 476 -SLLTADPEIGADVTDL 491 (696)
T ss_pred -HHHCCCHHHHHHHHHH
T ss_conf -0104778888999999
No 240
>PRK07334 threonine dehydratase; Provisional
Probab=59.81 E-value=13 Score=17.39 Aligned_cols=52 Identities=15% Similarity=0.305 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEE---------ECCCEEEEEECH---HHHHHHHHHHHHH
Q ss_conf 866785579999999986798299997---------078489999708---8999999999987
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAIT---------TSEIKISVLIDS---AYTELAVRSLHSC 405 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~is---------sSe~~IS~VV~~---~d~~~Av~~LH~~ 405 (411)
.+.+.||-.+++.+.+++.+.||.-+. .++..+.+.++- ++.++.++.|.++
T Consensus 329 ~ipd~PG~l~~~~~~i~~~~ani~~i~h~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~L~~~ 392 (399)
T PRK07334 329 DIRDRPGALAKVTALIGEAGANIIEVHHQRLFTTLPAKGAELELVIETRDAAHIQEVMAALRAA 392 (399)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 8888996799999998217997699998871577887738999999939999999999999977
No 241
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=59.56 E-value=9.4 Score=18.22 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=35.0
Q ss_pred CCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCH-HHHHHHHHHHH
Q ss_conf 0004841000145541285011123443222233310121230-24776688789
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPS-SSLEKALAVLS 328 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~-~d~~~~~~~L~ 328 (411)
.+++|++.++...++++|.|+-++-|-.-. ...-.+.|-+.. +|.+.+.+.|+
T Consensus 8 ~nk~GVL~~itgvIa~hg~NItytqqfi~~-~g~~~iY~ElE~v~d~e~Li~~L~ 61 (72)
T cd04874 8 EDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEEEEEEC-CCEEEEEEEEECCCCHHHHHHHHH
T ss_conf 687746999887998648986999999807-982899999967999899999987
No 242
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=59.50 E-value=13 Score=17.25 Aligned_cols=13 Identities=15% Similarity=0.095 Sum_probs=5.9
Q ss_pred CCEEEEECCEEEE
Q ss_conf 6158974891699
Q gi|254780873|r 336 YDVIQHEDNLVKI 348 (411)
Q Consensus 336 ~~~I~~~~~~a~I 348 (411)
-++|.+..+.++|
T Consensus 271 e~rv~~~~~kTvV 283 (285)
T PRK06027 271 EDRVLVNGNKTVV 283 (285)
T ss_pred CCEEEEECCEEEE
T ss_conf 7949996999899
No 243
>KOG2663 consensus
Probab=59.49 E-value=7.5 Score=18.91 Aligned_cols=59 Identities=22% Similarity=0.317 Sum_probs=29.2
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC--CHHHHHHHHHHHHHHHH
Q ss_conf 500048410001455412850111234432222333101212--30247766887898886
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT--PSSSLEKALAVLSDNKE 332 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i--~~~d~~~~~~~L~~~~~ 332 (411)
+.+.||++.||-.+|+..|-|||-..-...+......++.++ .+.-++++.+.++++..
T Consensus 84 VqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVn 144 (309)
T KOG2663 84 VQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVN 144 (309)
T ss_pred ECCCCHHHHHHHHHHHHCCCCCHHEEEECHHHHHHHHCEEEEECCHHHHHHHHHHHHHHHH
T ss_conf 3178228888888887615772131330044454444158895547899999999997644
No 244
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=59.02 E-value=13 Score=17.19 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=15.4
Q ss_pred EEEECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 999667866785579999999986798299
Q gi|254780873|r 348 ISAIGIGMQSYAGVASAFFLCLAEKGINIK 377 (411)
Q Consensus 348 ISvVG~gm~~~~Giaakif~aL~~~~InI~ 377 (411)
|.+.+ ++.||+.+++..+|.+.|+||.
T Consensus 3 i~i~~---~DrpgLl~~i~~~l~~~~l~I~ 29 (70)
T cd04873 3 VEVYA---PDRPGLLADITRVLADLGLNIH 29 (70)
T ss_pred EEEEE---CCCCCHHHHHHHHHHHCCCEEE
T ss_conf 99996---8978899999999988795077
No 245
>TIGR02836 spore_IV_A stage IV sporulation protein A; InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis . A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. .
Probab=58.66 E-value=4.7 Score=20.23 Aligned_cols=112 Identities=17% Similarity=0.198 Sum_probs=62.9
Q ss_pred CCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCC--EEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCC
Q ss_conf 04841000145541285011123443222233310--1212302477668878988860596158974891699996678
Q gi|254780873|r 277 HPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDI--TFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIG 354 (411)
Q Consensus 277 ~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~I--sf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~g 354 (411)
+.|...||++......|-=+ +. ..++ -|.-....++++..+|.+.++. .+++++--=+.
T Consensus 314 ~~GLFykiL~ev~g~~I~~~--------~~-Ll~~mkdl~~AK~eYDkv~~AL~~vket----------GyGvvap~L~e 374 (492)
T TIGR02836 314 KEGLFYKILEEVSGLEIRGE--------KE-LLELMKDLAHAKKEYDKVEEALKEVKET----------GYGVVAPELEE 374 (492)
T ss_pred CCCCCCEEHHHHCCCCCCCC--------HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC----------CCEEECCCCCC
T ss_conf 99860000232348503083--------67-8999999987423224799999877662----------63044176134
Q ss_pred CC-CCCCHHHHHHHHHHHCCCEEEEEEEC--------CCEEEEEEC-HHHHHHHHHHHHHHCCCCCC
Q ss_conf 66-78557999999998679829999707--------848999970-88999999999987097779
Q gi|254780873|r 355 MQ-SYAGVASAFFLCLAEKGINIKAITTS--------EIKISVLID-SAYTELAVRSLHSCYGLDVQ 411 (411)
Q Consensus 355 m~-~~~Giaakif~aL~~~~InI~~issS--------e~~IS~VV~-~~d~~~Av~~LH~~F~ld~~ 411 (411)
|+ ..|.+. +.=++.|+.+.+.+-| +.-|+=+|- +++++..|+-|=+.|.-|++
T Consensus 375 M~LeePEiv----rQG~RFGVrLkAsAPS~H~ik~Di~~E~~PiiGTEkqSEeLVkYll~~FE~~P~ 437 (492)
T TIGR02836 375 MKLEEPEIV----RQGNRFGVRLKASAPSLHIIKADIETEITPIIGTEKQSEELVKYLLEQFEEDPK 437 (492)
T ss_pred CCCCCCCEE----EECCCCEEEEEEECCCCEEEECCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 789887067----628831257541047600233030001056436742317899999898762642
No 246
>pfam02503 PP_kinase Polyphosphate kinase. Polyphosphate kinase (Ppk) catalyses the formation of polyphosphate from ATP, with chain lengths of up to a thousand or more orthophosphate molecules.
Probab=58.40 E-value=4.3 Score=20.53 Aligned_cols=70 Identities=29% Similarity=0.471 Sum_probs=39.8
Q ss_pred CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--------------ECCCCCCHHHHHHHHHHCHHHHHHHCCH
Q ss_conf 20001236210033431068058603433355684244--------------3068624289999988473455653461
Q gi|254780873|r 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--------------LGRGGSDTSAVAIAAAIKADRCDIYTDV 175 (411)
Q Consensus 110 ~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--------------lgRGGSD~tA~~ia~~l~A~~~~i~tdV 175 (411)
.|++++.+-=.-++.|++..+-|+-|+.|.-.+-+++. +|-| .| +..--.+|||
T Consensus 398 kARFDEe~NI~wA~~Le~aGv~ViyG~~glKvHaK~~LI~Rre~~~~~~Y~higTG--Ny---------n~~TA~~YtD- 465 (678)
T pfam02503 398 KARFDEENNIRWARRLEEAGVHVIYGVVGLKTHAKLALVVRREGGGLRRYVHLGTG--NY---------NEKTARLYTD- 465 (678)
T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEECCCCEEEEEEECCC--CC---------CHHHHHHEEC-
T ss_conf 33406788899999998599299917888500578999999707968999998688--85---------9555545540-
Q ss_pred HHHEECCCCCCCCCCE
Q ss_conf 4402458421234411
Q gi|254780873|r 176 CGIYTTDPRIEPKAHL 191 (411)
Q Consensus 176 ~Gi~taDPr~v~~a~~ 191 (411)
=|+|||||.+..++..
T Consensus 466 ~~l~T~~~~i~~D~~~ 481 (678)
T pfam02503 466 LGLFTADPEIGEDVAK 481 (678)
T ss_pred CEEECCCHHHHHHHHH
T ss_conf 1456058789999999
No 247
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=58.26 E-value=14 Score=17.11 Aligned_cols=40 Identities=20% Similarity=0.349 Sum_probs=17.7
Q ss_pred CCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCC
Q ss_conf 0111234662000127750004841000145541285011123
Q gi|254780873|r 257 ITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299 (411)
Q Consensus 257 Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~ 299 (411)
.++-++.+.+.+|.+ |..+.||.+ +...++....++.+|.
T Consensus 239 ~eA~s~~~gvg~v~l--MGR~sG~IA-~~a~lA~~~ad~~LIP 278 (442)
T PRK06830 239 VEAKGAPNGIGLVKL--MGRHSGFIA-AYAALASKDVNFVLIP 278 (442)
T ss_pred HHHHCCCCCEEEEEE--CCCCHHHHH-HHHHHCCCCCCEEECC
T ss_conf 776515785599998--366430899-9877513778789912
No 248
>TIGR02482 PFKA_ATP 6-phosphofructokinase; InterPro: IPR012828 6-phosphofructokinase (2.7.1.11 from EC) catalyses the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This entry contains bacterial ATP-dependent 6-phosphofructokinases, which lack a beta-hairpin loop present in IPR012829 from INTERPRO family members. IPR012829 from INTERPRO contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. IPR011183 from INTERPRO represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (2.7.1.90 from EC).; GO: 0003872 6-phosphofructokinase activity, 0005524 ATP binding, 0006002 fructose 6-phosphate metabolic process, 0006096 glycolysis.
Probab=57.85 E-value=14 Score=17.06 Aligned_cols=74 Identities=27% Similarity=0.245 Sum_probs=39.9
Q ss_pred HHHHHHHHHCC-CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCHHHHHH--------HCCEEEEECCCCCCCCCCEE
Q ss_conf 99999998439-986356733---2455121335520001236210033431--------06805860343335568424
Q gi|254780873|r 79 GLMVLALQSLG-IQAISLQGW---QIPIMTDSLHGMARICRVDEKKIVTHLK--------KKQVVVITGFQGLSHDNSVT 146 (411)
Q Consensus 79 ~l~a~~l~~~G-~~a~~l~~~---~~~i~t~~~~~~a~~~~~~~~~l~~~l~--------~~~v~v~~Gf~g~~~~g~~t 146 (411)
+.=|..|.+.| +|.+-+.+. |+ -.||..-+... ..+.+.+..+ ....+|+ -
T Consensus 104 y~GA~~L~~~gg~~~iGlPGTIDNDI-~~TDyTIGfDT----ALNTi~~avdKiRDTA~SHeR~f~i------------E 166 (302)
T TIGR02482 104 YTGAQKLYEEGGIPVIGLPGTIDNDI-QGTDYTIGFDT----ALNTILDAVDKIRDTATSHERAFVI------------E 166 (302)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCC-CCCCHHHHHHH----HHHHHHHHHHHHHCCCCCCCCEEEE------------E
T ss_conf 68899999717984787458502566-64322556666----7437998776542130121656899------------9
Q ss_pred EECCCCCCHHHHHHHHHHCHHHHH
Q ss_conf 430686242899999884734556
Q gi|254780873|r 147 TLGRGGSDTSAVAIAAAIKADRCD 170 (411)
Q Consensus 147 tlgRGGSD~tA~~ia~~l~A~~~~ 170 (411)
..||+--|. |..-|-|-+|+-+.
T Consensus 167 VMGR~aGdL-Al~aaiAtGAE~i~ 189 (302)
T TIGR02482 167 VMGRHAGDL-ALYAAIATGAEIII 189 (302)
T ss_pred ECCCCHHHH-HHHHHHHHHHHEEE
T ss_conf 507855789-99998864010211
No 249
>PRK06382 threonine dehydratase; Provisional
Probab=57.75 E-value=14 Score=17.05 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEE---------ECCCEEEEEEC---HHHHHHHHHHHHHH-CCC
Q ss_conf 866785579999999986798299997---------07848999970---88999999999987-097
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAIT---------TSEIKISVLID---SAYTELAVRSLHSC-YGL 408 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~is---------sSe~~IS~VV~---~~d~~~Av~~LH~~-F~l 408 (411)
.+.+.||..+++.+.+++.+.||.-+. .+...+.+.++ .++.++.++.|.++ |..
T Consensus 330 ~i~d~pG~L~~~~~~i~~~~~ni~~i~~~r~~~~~~~~~~~v~~~iEt~~~~h~~~i~~~l~~~G~~~ 397 (400)
T PRK06382 330 NIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREMGYKF 397 (400)
T ss_pred ECCCCCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCEEEEEEEEEECCHHHHHHHHHHHHHCCCEE
T ss_conf 86889977999999970689957999987602557876268999998099999999999999878968
No 250
>PRK08198 threonine dehydratase; Provisional
Probab=56.09 E-value=15 Score=16.87 Aligned_cols=76 Identities=11% Similarity=0.198 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE---------CCCEEEEE
Q ss_conf 477668878988860596158974891699996678667855799999999867982999970---------78489999
Q gi|254780873|r 319 SLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITT---------SEIKISVL 389 (411)
Q Consensus 319 d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~iss---------Se~~IS~V 389 (411)
|...+..++++-.-.- .....+++ .+.+.||-..++.+.+++.+.||.-+.- ++..+.++
T Consensus 311 D~~~l~~i~er~l~~~--------gr~~~~~v---~i~d~PG~l~~~~~~i~~~~anI~~i~h~R~~~~~~~~~~~v~~~ 379 (406)
T PRK08198 311 DVLLLSRVIERGLVAA--------GRYLKLRV---ELPDRPGQLAKLLSIIAELRANVIDVDHDRFSPGLRLGEVEVELT 379 (406)
T ss_pred CHHHHHHHHHHHHHHC--------CCEEEEEE---ECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEE
T ss_conf 9899999999987765--------99799999---827899679999999975799379999887257788664899999
Q ss_pred ECH---HHHHHHHHHHHHH
Q ss_conf 708---8999999999987
Q gi|254780873|r 390 IDS---AYTELAVRSLHSC 405 (411)
Q Consensus 390 V~~---~d~~~Av~~LH~~ 405 (411)
++- ++.+..++.|.++
T Consensus 380 iEt~~~~h~~~i~~~L~~~ 398 (406)
T PRK08198 380 LETRGPEHIDEILAALRDA 398 (406)
T ss_pred EEECCHHHHHHHHHHHHHC
T ss_conf 9929999999999999978
No 251
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family; InterPro: IPR004652 This family represents one branch of COG0042 from COG (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family) and includes NifR3 itself, from Rhodobacter capsulatus. Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes , and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. ; GO: 0016491 oxidoreductase activity, 0050660 FAD binding, 0008033 tRNA processing.
Probab=55.77 E-value=7.9 Score=18.72 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=14.7
Q ss_pred EEEECCCCHHHHHHH-HHHHHH
Q ss_conf 998068730489999-999861
Q gi|254780873|r 38 MVVSAMSGETDRLAE-LCRQVT 58 (411)
Q Consensus 38 vVvSA~~g~Td~L~~-l~~~~~ 58 (411)
||.+=|+|+||.=.+ |+.+..
T Consensus 10 V~~APmAGvtD~~FR~l~~~~~ 31 (336)
T TIGR00737 10 VVLAPMAGVTDLAFRRLVAEYG 31 (336)
T ss_pred EEECCCCCCCCHHHHHHHHHHC
T ss_conf 5643677876717899999852
No 252
>PRK13983 diaminopimelate aminotransferase; Provisional
Probab=55.01 E-value=16 Score=16.76 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 489999999861489988-9999998312999999999998439986
Q gi|254780873|r 47 TDRLAELCRQVTSIDNAR-ERDVVISTGEQVSSGLMVLALQSLGIQA 92 (411)
Q Consensus 47 Td~L~~l~~~~~~~~~~~-~~d~i~s~GE~~s~~l~a~~l~~~G~~a 92 (411)
-|.++++++++-..++.. +.+ --||+--+..+..+|++.|++.
T Consensus 5 ~~e~v~~l~~Lv~i~Svs~~~~---g~ge~~~a~~l~~~l~~~G~~~ 48 (399)
T PRK13983 5 RDEMIELLKELISIPAVNPESG---GEGEKEKAEYLENILREYGFDD 48 (399)
T ss_pred HHHHHHHHHHHHCCCCCCCCCC---CCCHHHHHHHHHHHHHHCCCCE
T ss_conf 8999999999968999798878---8489999999999998589988
No 253
>pfam00994 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=53.99 E-value=16 Score=16.65 Aligned_cols=69 Identities=22% Similarity=0.278 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCC
Q ss_conf 99999999999843998635673324551213355200012362100334310680586034333556842443068624
Q gi|254780873|r 75 QVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSD 154 (411)
Q Consensus 75 ~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD 154 (411)
--++.+++..|++.|...... +++-|+... -.+.+...+++..++|++|=.|.+.+ |
T Consensus 16 dsn~~~l~~~l~~~G~~v~~~-----~~v~Dd~~~-------i~~~l~~~~~~~DliittGG~g~g~~-----------D 72 (140)
T pfam00994 16 DTNGPLLAALLREAGAEVIRY-----GIVPDDPEA-------IKEALAAAADEADVVITTGGTGPGPD-----------D 72 (140)
T ss_pred EHHHHHHHHHHHHCCCEEEEE-----EEECCCHHH-------HHHHHHHHHCCCCEEEECCCCCCCCC-----------C
T ss_conf 869999999999879937799-----897889999-------99999997326999998788778989-----------8
Q ss_pred HHHHHHHHHHCH
Q ss_conf 289999988473
Q gi|254780873|r 155 TSAVAIAAAIKA 166 (411)
Q Consensus 155 ~tA~~ia~~l~A 166 (411)
+|..+++.+.+-
T Consensus 73 ~t~~al~~~~~~ 84 (140)
T pfam00994 73 VTPEALAELGGR 84 (140)
T ss_pred CHHHHHHHHHCC
T ss_conf 559999998566
No 254
>TIGR00514 accC acetyl-CoA carboxylase, biotin carboxylase; InterPro: IPR004549 This family represents the biotin carboxylase subunit found usually as a component of acetyl-CoA carboxylase. Acetyl-CoA carboxylase (6.4.1.2 from EC) is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase (6.3.4.14 from EC), and two subunits of carboxyl transferase in a 2:2 complex. In the first step of long-chain fatty acid synthesis, biotin carboxylase catalyses the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-coA. Homologous domains are found in eukaryotic forms of acetyl-CoA carboxylase and in a number of other carboxylases (e.g. pyruvate carboxylase). In some systems, the biotin carboxyl carrier protein and this protein (biotin carboxylase) may be shared by different carboxyltransferases. However, this model is not intended to identify the biotin carboxylase domain of propionyl-coA carboxylase. The model should hit the full length of proteins, except for chloroplast transit peptides in plants. If it hits a domain only of a longer protein, there may be a problem with the identification.; GO: 0016874 ligase activity.
Probab=53.30 E-value=17 Score=16.58 Aligned_cols=110 Identities=21% Similarity=0.234 Sum_probs=60.4
Q ss_pred HHHHHHHHHHCCCCEEEEEECCCCHHHHH-HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999967998899980687304899-99999861489988999999831299999999999843998635673324
Q gi|254780873|r 22 AALHVKREVDRGQEVAMVVSAMSGETDRL-AELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQI 100 (411)
Q Consensus 22 v~~~i~~~~~~g~~~ivVvSA~~g~Td~L-~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~ 100 (411)
...+|+...+-|.+.|.|.|-.=+ |.| +.||.++-.+..+.+.+..|-. ..++|++ ...|..|..-= .
T Consensus 14 A~RIiRAC~ElGi~TVAVyS~aD~--dalHV~LADEavCIGea~S~kSYL~I-----pnI~aAA-~~tG~~AiHPG---Y 82 (451)
T TIGR00514 14 ALRIIRACKELGIATVAVYSTADR--DALHVLLADEAVCIGEAPSAKSYLNI-----PNIIAAA-EITGADAIHPG---Y 82 (451)
T ss_pred HHHHHHHHHHCCCCEEEECCHHHH--HHHHHHHHCCCCCCCCCHHHCCCCHH-----HHHHHHH-HHCCCCEECCC---C
T ss_conf 889999888649863986004413--32343430253006862211244115-----8899988-77488076288---7
Q ss_pred CCCCCC-CCCC-------------CC-C-CCCCCCCHHHHHHHCCEEEEECCCC-CCCC
Q ss_conf 551213-3552-------------00-0-1236210033431068058603433-3556
Q gi|254780873|r 101 PIMTDS-LHGM-------------AR-I-CRVDEKKIVTHLKKKQVVVITGFQG-LSHD 142 (411)
Q Consensus 101 ~i~t~~-~~~~-------------a~-~-~~~~~~~l~~~l~~~~v~v~~Gf~g-~~~~ 142 (411)
|++..+ +|.. +. + ...|...-.+..++..||+|||-.| ...+
T Consensus 83 GFLSENA~FAe~c~~~g~~FIGP~pe~Ir~MGDK~~A~~~mKkaGVP~VPGS~GP~~~~ 141 (451)
T TIGR00514 83 GFLSENADFAEICEDHGITFIGPSPEAIRLMGDKVTAKETMKKAGVPVVPGSDGPLVED 141 (451)
T ss_pred CHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCC
T ss_conf 73443124788987388266678712011268868999999748876623888863102
No 255
>COG3602 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.96 E-value=12 Score=17.58 Aligned_cols=80 Identities=28% Similarity=0.350 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCC--CCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHH
Q ss_conf 5454542101222310111234662000127--75000484100014554128501112344322223331012123024
Q gi|254780873|r 242 GTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319 (411)
Q Consensus 242 GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~--~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d 319 (411)
=|+|. +++..+. -|.+..--+.+||+. .-....|+.+.+-..|+++||+..++.--.. |- ..++.+.
T Consensus 50 ~tLil-er~~Aea---aGl~~~~~~~lITL~VhSsLeaVGltAA~ataLa~aGis~NvvaayyH------DH-lFVp~e~ 118 (134)
T COG3602 50 LTLIL-ERDAAEA---AGLSYSAVCRLITLNVHSSLEAVGLTAAFATALAEAGISCNVVAAYYH------DH-LFVPAER 118 (134)
T ss_pred CEEEE-EHHHHHH---CCCCCCCEEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHC------CE-EEEEHHH
T ss_conf 27987-6555886---599712132367764323566652899999999874866005566522------32-6515898
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 7766887898886
Q gi|254780873|r 320 LEKALAVLSDNKE 332 (411)
Q Consensus 320 ~~~~~~~L~~~~~ 332 (411)
.+++..+|..+..
T Consensus 119 a~~A~~~L~~laa 131 (134)
T COG3602 119 AKEALVVLQGLAA 131 (134)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999886
No 256
>PRK02047 hypothetical protein; Provisional
Probab=51.89 E-value=17 Score=16.55 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=38.8
Q ss_pred CCCCCCCHHHHHHHHCCCCEE--CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 004841000145541285011--123443222233310121230247766887898886
Q gi|254780873|r 276 DHPGISASIFSPLAEAHINID--MIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 276 ~~~g~~a~If~~La~~~I~Vd--mI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
..++|...+.+++.++.-..+ -+....|..+.+.++++++-....+++..+-+++..
T Consensus 25 a~~~~~~~V~~iv~~h~p~~~~~~v~~r~S~~G~Y~Svtv~i~ats~~QLd~iY~~L~~ 83 (91)
T PRK02047 25 AHPEFADTIFKVVSVHDPEFDLEKIEERPSSGGNYTGLTITVRATSREQLDNIYRALTG 83 (91)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 87107899999999977999803378714999868999999998999999999999841
No 257
>PRK00341 hypothetical protein; Provisional
Probab=51.50 E-value=16 Score=16.70 Aligned_cols=57 Identities=14% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE--CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 0004841000145541285011--123443222233310121230247766887898886
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID--MIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd--mI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
...++|...|++++.+|- .+| -|....|..|.+.++++++-....+++..+-+++..
T Consensus 25 ~~~~~f~~~V~~iv~~ha-~~d~~~i~~r~Ss~G~y~SvTv~i~Ats~~QLd~ly~~L~~ 83 (91)
T PRK00341 25 DTGVGFKDLVIEILQKHA-DVDLETLAERQSSNGKYTTVQLHIVATSEDQLQDINSALRA 83 (91)
T ss_pred CCCCHHHHHHHHHHHHCC-CCCCCCEEEECCCCCEEEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 587208899999998728-98811437813899738999999998999999999999731
No 258
>COG5140 UFD1 Ubiquitin fusion-degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.90 E-value=11 Score=17.77 Aligned_cols=54 Identities=15% Similarity=0.259 Sum_probs=32.8
Q ss_pred HHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHH-HHHHHHHCCC--EEEEE
Q ss_conf 53461440245842123441105679999999884031101378-8764331385--26761
Q gi|254780873|r 171 IYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVR-SVELAMLYKM--CLFVR 229 (411)
Q Consensus 171 i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~-~~~~~~~~~i--pi~i~ 229 (411)
..-|+.+.|-.-||+.|-|-.-+...- =++||.||+-|. ++.-+-.-|| |..-.
T Consensus 14 f~n~~~q~F~e~~rcyp~am~~d~~r~-----n~NfGGKvilPpSaL~kLs~lni~yPmlF~ 70 (331)
T COG5140 14 FLNDLFQLFGEKPRCYPRAMKFDGCRQ-----NANFGGKVILPPSALVKLSSLNIQYPMLFE 70 (331)
T ss_pred HHHHHHHHHCCCCCCEEEECCCCCCCC-----CCCCCCEEECCHHHHHHHHHHCCCCCEEEE
T ss_conf 654346664447532043012675466-----777686287488998887750367866899
No 259
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=49.65 E-value=19 Score=16.20 Aligned_cols=58 Identities=21% Similarity=0.249 Sum_probs=30.5
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 50004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
+++.||.++++.+.+++.|=|+--|--..+... ..-..|++.-.+.+.+..+++.+..
T Consensus 6 ~~~~pG~Lg~vataIg~~GGnI~~idvve~~~~-~~v~Ditv~~~d~~h~~~Iv~al~~ 63 (74)
T cd04887 6 LPNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRD-YTVRDITVDAPSEEHAETIVAAVRA 63 (74)
T ss_pred ECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCC-EEEEEEEEECCCHHHHHHHHHHHHC
T ss_conf 549986499999999876985677899994499-5999999986977889999999961
No 260
>COG2222 AgaS Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]
Probab=49.60 E-value=11 Score=17.72 Aligned_cols=13 Identities=31% Similarity=0.286 Sum_probs=4.2
Q ss_pred EEECCCCCCHHHH
Q ss_conf 4430686242899
Q gi|254780873|r 146 TTLGRGGSDTSAV 158 (411)
Q Consensus 146 ttlgRGGSD~tA~ 158 (411)
.+.||||||..+.
T Consensus 43 ~~~g~GsS~~~~~ 55 (340)
T COG2222 43 LFVGCGSSLHAAT 55 (340)
T ss_pred EEEECCCHHHHHH
T ss_conf 9981586288999
No 261
>PRK13007 dipeptidase; Reviewed
Probab=49.59 E-value=19 Score=16.20 Aligned_cols=99 Identities=19% Similarity=0.183 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 48999999986148998899999983129999999999984399863567332455121335520001236210033431
Q gi|254780873|r 47 TDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLK 126 (411)
Q Consensus 47 Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~ 126 (411)
...|++|++++-..+++. -.|.--+.+++.+|++.+.... ..+.+.--++.......++. |.
T Consensus 7 ~~d~i~Ll~~LV~i~S~s-------g~E~~~a~~l~~~l~~~~~~~v---------~~~~~nv~a~~~~g~~~~ll--l~ 68 (354)
T PRK13007 7 AADLAELTAALVDIPSVS-------GHEKALADAVEAALRALPGLEV---------IRHGNSVVARTDLGRPSRVL--LA 68 (354)
T ss_pred HHHHHHHHHHHCCCCCCC-------CCHHHHHHHHHHHHHHCCCCEE---------EEECCEEEEECCCCCCCEEE--EE
T ss_conf 778999999972999929-------7889999999999986799658---------98899899980799998699--97
Q ss_pred --HCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCH
Q ss_conf --0680586034333556842443068624289999988473
Q gi|254780873|r 127 --KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKA 166 (411)
Q Consensus 127 --~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A 166 (411)
-+.||+-.+|-+.-.+|. .+|||-+|.-+.+ |+++.|
T Consensus 69 gH~DtVp~~d~~~~~i~dg~--iyGRGa~DmKggl-Aa~l~a 107 (354)
T PRK13007 69 GHLDTVPVADNLPSRREGGR--LYGCGASDMKSGL-AVMLHL 107 (354)
T ss_pred CCCCCCCCCCCCCCEEECCE--EEECCHHHCCHHH-HHHHHH
T ss_conf 66688889999670998999--9936744310169-999999
No 262
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=49.31 E-value=19 Score=16.17 Aligned_cols=167 Identities=12% Similarity=0.113 Sum_probs=72.0
Q ss_pred EEECCCCCCHHHH--HHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH-HCC---CCCHHHHHHHHH
Q ss_conf 4430686242899--9998847345565346144024584212344110567999999988-403---110137887643
Q gi|254780873|r 146 TTLGRGGSDTSAV--AIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS-SLG---AKVMQVRSVELA 219 (411)
Q Consensus 146 ttlgRGGSD~tA~--~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa-~~G---akvlhp~~~~~~ 219 (411)
+.|+..|+|..-. +++-----..|.-|=+ + .|+++.+..-|-.+|.++. ..+ +-.+- +-.-+
T Consensus 191 ~Ll~~~~~~l~~Ik~VySHpqAl~QC~~~L~---------~-~p~~~~~~~~sTa~Aa~~v~~~~~~~~AAIa--s~~aA 258 (386)
T PRK10622 191 CVLVSGTTDLSTIETVYSHPQPFQQCSKFLN---------R-YPHWKIEYTESTSAAMEKVAQANSPHVAALG--SEAGG 258 (386)
T ss_pred EEECCCCCCHHHCEEEEEEHHHHHHHHHHHH---------H-CCCCCEEEECCCHHHHHHHHCCCCCCHHHHC--HHHHH
T ss_conf 2306899984446489876579999999999---------7-8998459707809999998627994312303--48688
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCC
Q ss_conf 31385267611237777765435454542101222310111234662000127750004841000145541285011123
Q gi|254780873|r 220 MLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299 (411)
Q Consensus 220 ~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~ 299 (411)
..++.++.-+|.-+...+-+. ==+|.. ......... .+..+++ -...+.||-+.++++.|+++|||.-.|-
T Consensus 259 ~~ygL~il~~~I~D~~~N~TR-F~vi~~-~~~~~~~~~-----~~ktsl~--~~~~~~pGaL~~~L~~Fa~~~INLtkIe 329 (386)
T PRK10622 259 ALYGLQVLERILANQQQNITR-FIVLAR-KAINVSDQV-----PAKTTLL--MATGQQAGALVEALLVLRNHNLIMTKLE 329 (386)
T ss_pred HHCCCCCHHHHHCCCCCCEEE-EEEEEC-CCCCCCCCC-----CCCEEEE--EECCCCCCHHHHHHHHHHHCCCCEEEEE
T ss_conf 775970245431678888355-999976-887888889-----8736899--9669998779999999998797865786
Q ss_pred CCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHHHHC
Q ss_conf 4432222333101212302---4776688789888605
Q gi|254780873|r 300 QNVSEDGQYVDITFTTPSS---SLEKALAVLSDNKENI 334 (411)
Q Consensus 300 qs~s~~~~~~~Isf~i~~~---d~~~~~~~L~~~~~~~ 334 (411)
+-... +..-...|.++=+ +-+++..+|+++.+..
T Consensus 330 SRP~~-~~~~~Y~FfvD~eGh~~d~~v~~aL~~l~~~~ 366 (386)
T PRK10622 330 SRPIH-GNPWEEMFYLDIQANLESAEMQKALKELGEIT 366 (386)
T ss_pred CCCCC-CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 32079-99964799999727879999999999999865
No 263
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism]
Probab=49.28 E-value=17 Score=16.53 Aligned_cols=133 Identities=14% Similarity=0.103 Sum_probs=69.3
Q ss_pred CCCCCCCEECCCCHHHHHHHHHC-----CCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCC---CCCCCCCCCCC
Q ss_conf 21234411056799999998840-----31101378876433138526761123777776543545---45421012223
Q gi|254780873|r 184 RIEPKAHLMKKISFEEMLEMSSL-----GAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTL---ICSGEDIMEKK 255 (411)
Q Consensus 184 r~v~~a~~i~~lsy~Ea~eLa~~-----Gakvlhp~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~---I~~~~~~~~~~ 255 (411)
+..|++..+..=|-.+|+++..- .|-+=.+.+. ..++..+..+|.-|..++ -|. |... . .+
T Consensus 118 ~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA---~~ygL~il~~~I~D~~~N----~TRF~vl~r~-~---~~ 186 (279)
T COG0077 118 AHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAA---ELYGLDILAENIEDEPNN----RTRFLVLSRR-K---PP 186 (279)
T ss_pred HCCCCCEEEECCCHHHHHHHHHHCCCCCEEEECCHHHH---HHCCCHHHHHCCCCCCCC----EEEEEEEECC-C---CC
T ss_conf 72888369981788999999972898673687698789---773957676135578888----5789999656-7---87
Q ss_pred CCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHH---HHHHHHHHHHHHHH
Q ss_conf 101112346620001277500048410001455412850111234432222333101212302---47766887898886
Q gi|254780873|r 256 VITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSS---SLEKALAVLSDNKE 332 (411)
Q Consensus 256 ~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~---d~~~~~~~L~~~~~ 332 (411)
.... .....+++ -.+++.||-+.++++.|+.+|||.-.|-+-.+. ...-+--|.++=+ +-.....+|+++..
T Consensus 187 ~~~~--~~~kTsl~--f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k-~~~~~Y~F~iD~eg~~~~~~v~~AL~eL~~ 261 (279)
T COG0077 187 SVSD--GPEKTSLI--FSVPNKPGALYKALGVFAKRGINLTKIESRPLK-TGLGEYLFFIDIEGHIDDPLVKEALEELKE 261 (279)
T ss_pred CCCC--CCCEEEEE--EECCCCCCHHHHHHHHHHHCCCCEEEEEECCCC-CCCEEEEEEEEEECCCCCHHHHHHHHHHHH
T ss_conf 7688--77349999--985998704999999998769462268602068-987059999999547686669999999985
No 264
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=48.32 E-value=12 Score=17.52 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=50.3
Q ss_pred HHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHH-HCCCC
Q ss_conf 76433138526761123777776543545454210122231011123466200012775000484100014554-12850
Q gi|254780873|r 216 VELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLA-EAHIN 294 (411)
Q Consensus 216 ~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La-~~~I~ 294 (411)
+.|+++..||+.|-+. -|+|++++...---.=.||+..+ .+|..+ ++.+.|+ +.+|+
T Consensus 392 ~APLvRGRIptvV~~V----------~TviTPGe~vDvlvTd~GvavNd--------klpkr~----dL~e~L~~~~~ip 449 (496)
T TIGR01584 392 VAPLVRGRIPTVVEKV----------TTVITPGESVDVLVTDIGVAVND--------KLPKRK----DLIEKLSSKKGIP 449 (496)
T ss_pred ECCHHHCCCCEEECCC----------EEEECCCCCEEEEECCCCEEECC--------CCCCCH----HHHHHHCCCCCCC
T ss_conf 4332307756575796----------06984888433898142179738--------889874----3688741679882
Q ss_pred EECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEE
Q ss_conf 111234432222333101212302477668878988860596158974891699996
Q gi|254780873|r 295 IDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAI 351 (411)
Q Consensus 295 VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvV 351 (411)
+.-| ++-.+++.. .....++|++.+.+ |+||
T Consensus 450 ~~tI------------------EeL~e~A~~------~tGkP~pieFtd~v--Vavv 480 (496)
T TIGR01584 450 LYTI------------------EELKEKAEE------ITGKPEPIEFTDKV--VAVV 480 (496)
T ss_pred EECH------------------HHHHHHHHH------HCCCCCCCEECCEE--EEEE
T ss_conf 4438------------------999999997------27898850132737--9999
No 265
>PRK08526 threonine dehydratase; Provisional
Probab=48.13 E-value=20 Score=16.05 Aligned_cols=52 Identities=17% Similarity=0.165 Sum_probs=38.5
Q ss_pred CCCCCCCHHHHHHHHHHHCCCEEEEEE----E-----CCCEEEEEECH---HHHHHHHHHHHHH
Q ss_conf 866785579999999986798299997----0-----78489999708---8999999999987
Q gi|254780873|r 354 GMQSYAGVASAFFLCLAEKGINIKAIT----T-----SEIKISVLIDS---AYTELAVRSLHSC 405 (411)
Q Consensus 354 gm~~~~Giaakif~aL~~~~InI~~is----s-----Se~~IS~VV~~---~d~~~Av~~LH~~ 405 (411)
.+.+.||..+++.+.+++.+.||.-+. . .+..+.+.++- ++.++.++.|.+.
T Consensus 332 ~~~d~pG~l~~~~~~i~~~~~ni~~~~~~r~~~~~~~~~~~v~~~~Et~~~~h~~~l~~~l~~~ 395 (403)
T PRK08526 332 TLVDKPGALMGLTDILKIANANIVKIDYDRFSTKLDYGDANISITLETKGKEHQEEIRKILTEK 395 (403)
T ss_pred ECCCCCCHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCEEEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 8688996799999997258995799998862577887736999999949999999999999987
No 266
>PRK12815 carB carbamoyl phosphate synthase large subunit; Reviewed
Probab=47.42 E-value=20 Score=15.98 Aligned_cols=16 Identities=25% Similarity=0.142 Sum_probs=8.6
Q ss_pred HHHHHCCCCEECCCCC
Q ss_conf 4554128501112344
Q gi|254780873|r 286 SPLAEAHINIDMIIQN 301 (411)
Q Consensus 286 ~~La~~~I~VdmI~qs 301 (411)
..|.+.|+...||..+
T Consensus 582 ~aLr~~G~etImiN~N 597 (1068)
T PRK12815 582 FALKKEGYETIMINNN 597 (1068)
T ss_pred HHHHHCCCEEEEECCC
T ss_conf 9999689748996278
No 267
>PRK00907 hypothetical protein; Provisional
Probab=46.63 E-value=17 Score=16.56 Aligned_cols=56 Identities=20% Similarity=0.193 Sum_probs=40.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE--CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHH
Q ss_conf 0004841000145541285011--1234432222333101212302477668878988
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID--MIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDN 330 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd--mI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~ 330 (411)
..+++|...|.++++++...++ -|+.-.|..|.+++++.++.....+++..+-+.+
T Consensus 25 ~a~~~~~~~i~~iv~~~~~~~~~~~i~~r~SS~GkYisvTi~i~AtSReQlD~iYraL 82 (92)
T PRK00907 25 TAERGLETELPRLLAATGVELVQERISWKHSSSGKYVSVRIGFRAESREQYDAAHQAL 82 (92)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCHHHEEECCCCCCEEEEEEEEEEECCHHHHHHHHHHH
T ss_conf 6860089999999999577548525676447898279999999978899999999987
No 268
>TIGR00119 acolac_sm acetolactate synthase, small subunit; InterPro: IPR004789 Acetolactate synthases are a group of biosynthetic enzymes apparently found in plants, fungi and bacteria that are capable of de novo synthesis of the branched-chain amino acids . They can all synthesize acetolactate from pyruvate in the biosynthesis of valine, while some are also capable of synthesizing acetohydroxybutyrate from pyruvate and ketobutyrate during the biosynthesis of isoleucine. These enzymes generally require thiamin diphosphate, FAD and a divalent metal ion for catalysis, though some enzymes specific for acetolactate synthesis do not require FAD. They are composed of two subunits, a large catalytic subunit, and a smaller regulatory subunit which binds the natural modulators (valine, and in some cases leucine or isoleucine). These enzymes are the target for currently-used herbicides such as sulphonylureas and imidazolinones. Their restricted distribution also makes them potential targets for the development of novel antibacterial and antifungal compounds. This entry represents the small regulatory subunit of acetolactate synthase. It contains an ACT domain, which is a predicted regulatory ligand-binding fold often found in proteins regulated by small-molecule effectors .; GO: 0003984 acetolactate synthase activity, 0009082 branched chain family amino acid biosynthetic process.
Probab=46.55 E-value=21 Score=15.89 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=49.1
Q ss_pred CCCCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEEC--CHHHHHHHHHHHHHHHHHCCCCEE----EEECCEEE
Q ss_conf 500048410001455412850111234432222333101212--302477668878988860596158----97489169
Q gi|254780873|r 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTT--PSSSLEKALAVLSDNKENIGYDVI----QHEDNLVK 347 (411)
Q Consensus 274 ~~~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i--~~~d~~~~~~~L~~~~~~~~~~~I----~~~~~~a~ 347 (411)
+.+.+|.+.++...|.+.+.|++-++-+..+......+++.+ ++..++++.+.++++..-+....+ .++..+++
T Consensus 9 ~~~~~g~l~~~~g~~~~~g~n~~~~~~~~~~~~~~~~~~~~~~g~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~ 88 (205)
T TIGR00119 9 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQLTKQLNKLVDVLKVSDLTESESVERELCL 88 (205)
T ss_pred EECCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHEE
T ss_conf 51454136787776653156610013115677652047888605414689999988765433321024430123221002
Q ss_pred EEEEC
Q ss_conf 99966
Q gi|254780873|r 348 ISAIG 352 (411)
Q Consensus 348 ISvVG 352 (411)
+.+..
T Consensus 89 ~~~~~ 93 (205)
T TIGR00119 89 VKVSA 93 (205)
T ss_pred EEEEC
T ss_conf 34312
No 269
>pfam05089 NAGLU Alpha-N-acetylglucosaminidase (NAGLU). Alpha-N-acetylglucosaminidase, a lysosomal enzyme required for the stepwise degradation of heparan sulfate. Mutations on the alpha-N-acetylglucosaminidase (NAGLU) gene can lead to Mucopolysaccharidosis type IIIB (MPS IIIB; or Sanfilippo syndrome type B) characterized by neurological dysfunction but relatively mild somatic manifestations.
Probab=46.40 E-value=21 Score=15.87 Aligned_cols=64 Identities=25% Similarity=0.371 Sum_probs=42.8
Q ss_pred HHHHH-HHCCEEEEECCCCCCCC--------CCEEEECCC-C-------------CCHHHHHHHHHHCHHHHHHHCCHHH
Q ss_conf 03343-10680586034333556--------842443068-6-------------2428999998847345565346144
Q gi|254780873|r 121 IVTHL-KKKQVVVITGFQGLSHD--------NSVTTLGRG-G-------------SDTSAVAIAAAIKADRCDIYTDVCG 177 (411)
Q Consensus 121 l~~~l-~~~~v~v~~Gf~g~~~~--------g~~ttlgRG-G-------------SD~tA~~ia~~l~A~~~~i~tdV~G 177 (411)
|...+ +-|-.||.|||-|.-+. -.++.+|+= | .|=.-+-||+..=....+.+= ++.
T Consensus 162 Il~RmrelGM~PVLP~F~G~VP~~~~~~~P~A~i~~~~~W~gF~~~y~~~~~LdP~DplF~~i~~~F~~~q~~~yG-t~~ 240 (672)
T pfam05089 162 ILDRMRELGMTPVLPAFAGHVPRALKRKYPNANITRQGRWGGFDSRYCRPYFLDPTDPLFAKIAKLFLEEQKKLYG-TDH 240 (672)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHC-CCC
T ss_conf 9999998599162776578885899975899805537887898977677754689980799999999999999858-686
Q ss_pred HEECCCCC
Q ss_conf 02458421
Q gi|254780873|r 178 IYTTDPRI 185 (411)
Q Consensus 178 i~taDPr~ 185 (411)
+|.+||=-
T Consensus 241 ~Y~~D~Fn 248 (672)
T pfam05089 241 IYSADPFN 248 (672)
T ss_pred CCCCCCCC
T ss_conf 10557545
No 270
>PRK04998 hypothetical protein; Provisional
Probab=44.73 E-value=22 Score=15.70 Aligned_cols=57 Identities=12% Similarity=0.194 Sum_probs=36.0
Q ss_pred CCCCCCCHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHH
Q ss_conf 004841000145541285011123443222233310121230247766887898886
Q gi|254780873|r 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKE 332 (411)
Q Consensus 276 ~~~g~~a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~ 332 (411)
..++|...|.+++.++-=.-.-.....|..|.+.++++++-....+++..+-+++..
T Consensus 24 ~~~~f~~~V~~iv~~h~p~d~~~~~r~SskG~Y~Svtv~i~a~s~~QL~~iY~~L~~ 80 (88)
T PRK04998 24 ARPELVDQVVEVVQRHAPGDYTPTVKPSSKGNYHSVSITITATSIEQVETLYEELAK 80 (88)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCHHHHHHHHHHHHC
T ss_conf 870188999999998778877841425889837999999998799999999999734
No 271
>COG3414 SgaB Phosphotransferase system, galactitol-specific IIB component [Carbohydrate transport and metabolism]
Probab=43.45 E-value=9.6 Score=18.18 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=31.0
Q ss_pred CHHHHHHHHCCCCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCH
Q ss_conf 00014554128501112344322223331012123024776688789888605961589748916999966786678557
Q gi|254780873|r 282 ASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGV 361 (411)
Q Consensus 282 a~If~~La~~~I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Gi 361 (411)
-+|=+.|.++|+++++-..+..+.... .+..|+--.-..+.+..+. . +. +.+-++|.+| +...+
T Consensus 20 ~kve~~l~~~gi~~~~~~~~v~~~~~~------~~~aDiiv~s~~l~~~~~~---~-----~~-~~v~~~~~~~-d~~ei 83 (93)
T COG3414 20 MKVEEVLKELGIDVDVEQCAVDEIKAL------TDGADIIVTSTKLADEFED---I-----PK-GYVVITGNGM-DIEEI 83 (93)
T ss_pred HHHHHHHHHCCCCCEEEEEEECCCCCC------CCCCCEEEEEHHHHHHCCC---C-----CC-CEEEEECCCC-CHHHH
T ss_conf 999999998599842666771111457------8755299974675655076---8-----87-5189974647-87999
Q ss_pred HHHHHHHHH
Q ss_conf 999999998
Q gi|254780873|r 362 ASAFFLCLA 370 (411)
Q Consensus 362 aakif~aL~ 370 (411)
..+++..|.
T Consensus 84 ~~~l~~~L~ 92 (93)
T COG3414 84 KQKLLEILK 92 (93)
T ss_pred HHHHHHHHH
T ss_conf 999999971
No 272
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=42.88 E-value=24 Score=15.52 Aligned_cols=11 Identities=0% Similarity=-0.118 Sum_probs=4.8
Q ss_pred CEEEEECCEEE
Q ss_conf 15897489169
Q gi|254780873|r 337 DVIQHEDNLVK 347 (411)
Q Consensus 337 ~~I~~~~~~a~ 347 (411)
++|.+..+.++
T Consensus 277 ~rv~v~~~kTV 287 (289)
T PRK13010 277 HRVFINGDRTV 287 (289)
T ss_pred CEEEEECCEEE
T ss_conf 94999599888
No 273
>PRK07869 amidase; Provisional
Probab=42.75 E-value=24 Score=15.55 Aligned_cols=26 Identities=27% Similarity=0.180 Sum_probs=12.8
Q ss_pred ECCCCC-CHHHHHHHHHHCHHHHHHHCCH
Q ss_conf 306862-4289999988473455653461
Q gi|254780873|r 148 LGRGGS-DTSAVAIAAAIKADRCDIYTDV 175 (411)
Q Consensus 148 lgRGGS-D~tA~~ia~~l~A~~~~i~tdV 175 (411)
.--||| -=||+++|+.+ --+-+=||.
T Consensus 152 ~~pGGSSgGsAaAVAag~--~~~alGTDt 178 (467)
T PRK07869 152 YTAGASSGGSAALVAAGV--VPIAHANDG 178 (467)
T ss_pred CCCCCCHHHHHHHHHCCC--CCEEECCCC
T ss_conf 898876389999998299--855610457
No 274
>PRK06915 acetylornithine deacetylase; Validated
Probab=42.45 E-value=24 Score=15.48 Aligned_cols=40 Identities=13% Similarity=0.233 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 89999999861489988999999831299999999999843998635
Q gi|254780873|r 48 DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAIS 94 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~ 94 (411)
+.++++++++-..++.. .-|.--+.+++.+|++.|+....
T Consensus 17 ~e~i~ll~~LV~i~S~s-------g~e~~~~~~i~~~l~~~G~~~e~ 56 (422)
T PRK06915 17 EESVKLLKRLIQEKSVS-------GDESGAQAIVIEKLRELGLDLDI 56 (422)
T ss_pred HHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCCEEE
T ss_conf 98999999995799989-------78788999999999977995886
No 275
>PRK08588 succinyl-diaminopimelate desuccinylase; Reviewed
Probab=41.57 E-value=25 Score=15.39 Aligned_cols=96 Identities=17% Similarity=0.187 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCCC-HHHH
Q ss_conf 899999998614899889999998312999999999998439986356733245512133552--0001236210-0334
Q gi|254780873|r 48 DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGM--ARICRVDEKK-IVTH 124 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~--a~~~~~~~~~-l~~~ 124 (411)
|.++++.+++-..++.. -.|.--+..+..+|++.|++....... + ...+ +++-...... +..+
T Consensus 2 ~e~v~ll~~Lv~i~S~s-------g~e~~~~~~l~~~l~~~G~~~~~~~~~------~-~~~nlva~~g~~~~~l~l~gH 67 (378)
T PRK08588 2 EEKIQILADIVKINSVN-------DNEIEVANYLQDLFAKHGIESKIVKVN------D-GRANLVAEIGSGSPVLALSGH 67 (378)
T ss_pred CHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCCEEEEECC------C-CEEEEEEEECCCCCEEEEECC
T ss_conf 46999999984899949-------389999999999999889967999728------9-907999998999957999786
Q ss_pred HHHCCEEE-------EECCCCCCCCCCEEEECCCCCCHHHHHHH
Q ss_conf 31068058-------60343335568424430686242899999
Q gi|254780873|r 125 LKKKQVVV-------ITGFQGLSHDNSVTTLGRGGSDTSAVAIA 161 (411)
Q Consensus 125 l~~~~v~v-------~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia 161 (411)
+ +.||+ .+-|-+.-.+|. .+|||-+|.-+.+.|
T Consensus 68 ~--DvVp~g~~~~W~~~Pf~~~~~dg~--lyGRG~~D~Kg~~aa 107 (378)
T PRK08588 68 M--DVVAAGDQDKWTYDPFKLTEKDGK--LYGRGATDMKSGLAA 107 (378)
T ss_pred C--CCCCCCCCCCCCCCCCCEEEECCE--EEECCCCCCCCCHHH
T ss_conf 5--726999745574799752998999--995776535465799
No 276
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial; InterPro: IPR012803 Members of this family represent the alpha subunit of the mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (4.2.1.17 from EC) and 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC). Some characterization of these proteins has been done in human (P40939 from SWISSPROT), pig (Q29554 from SWISSPROT) and rat (Q64428 from SWISSPROT). The beta subunit has acetyl-CoA C-acyltransferase (2.3.1.16 from EC) activity.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0004300 enoyl-CoA hydratase activity, 0006635 fatty acid beta-oxidation, 0005739 mitochondrion, 0016507 fatty acid beta-oxidation multienzyme complex.
Probab=41.46 E-value=8.3 Score=18.61 Aligned_cols=192 Identities=19% Similarity=0.249 Sum_probs=90.0
Q ss_pred EEECCCCCCHHHHHHHHHHCH-HHHHHHCCHHHHEECCCCCC----CCC-CEE-CCCCHHHHHHHHH-CCCCCHHHHHHH
Q ss_conf 443068624289999988473-45565346144024584212----344-110-5679999999884-031101378876
Q gi|254780873|r 146 TTLGRGGSDTSAVAIAAAIKA-DRCDIYTDVCGIYTTDPRIE----PKA-HLM-KKISFEEMLEMSS-LGAKVMQVRSVE 217 (411)
Q Consensus 146 ttlgRGGSD~tA~~ia~~l~A-~~~~i~tdV~Gi~taDPr~v----~~a-~~i-~~lsy~Ea~eLa~-~Gakvlhp~~~~ 217 (411)
-|-..---||.|.++|..|+- +.+...+|=+|.||. |+. .++ |.+ +=+.+.|..+|+. ||..| =|..
T Consensus 488 IT~~~TSkdT~A~AvavGLKQGKvvivVkDgPGFytt--RcL~pM~aE~~RlLQEGvDPk~lD~~tt~FGFPV---GAAT 562 (740)
T TIGR02441 488 ITHDGTSKDTLASAVAVGLKQGKVVIVVKDGPGFYTT--RCLGPMLAEVIRLLQEGVDPKKLDKLTTKFGFPV---GAAT 562 (740)
T ss_pred ECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCEEE--ECCHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCC---CHHH
T ss_conf 5488987778999998410366279997439974573--1022579999999735888688876654237861---1222
Q ss_pred HHHHCCCEE--EEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCHHCC--CCCCCCCCCCCHHHHHHHHCC
Q ss_conf 433138526--761123777776543545454-210122231011123466200012--775000484100014554128
Q gi|254780873|r 218 LAMLYKMCL--FVRSSFEDHGQQEQLGTLICS-GEDIMEKKVITGIAYTKDEAQISL--RRLRDHPGISASIFSPLAEAH 292 (411)
Q Consensus 218 ~~~~~~ipi--~i~ntf~~~~~~~~~GT~I~~-~~~~~~~~~Vk~Is~~~~i~~Iti--~~~~~~~g~~a~If~~La~~~ 292 (411)
++=|-+|.+ ||-.- . ...-|-...- +.+.++.-.-+|--+|+.===|.| .+..+...+..+..++|++..
T Consensus 563 L~DEVG~DVa~HvA~d---L--gKafGeRfgGG~~~ll~~lV~~GflGRK~GKGif~Y~~g~kG~~~vN~~~~~il~~~k 637 (740)
T TIGR02441 563 LADEVGVDVAEHVAED---L--GKAFGERFGGGSLELLSELVKAGFLGRKSGKGIFIYQEGKKGSKKVNSDADEILAQYK 637 (740)
T ss_pred HHHHCCCCHHHHHHHH---H--HHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCEEEEECCCEECCCCCCHHHHHHHHHHC
T ss_conf 0011013235689987---7--8770556688878999999862477230254068846835127661435899999714
Q ss_pred CCEECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCC
Q ss_conf 50111234432222333101212302477668878988860596158974891699996678667855
Q gi|254780873|r 293 INIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 (411)
Q Consensus 293 I~VdmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~G 360 (411)
..+.-=. +++| |+.+-+=.--...+.-.|++ ++-.-..+.|++ ||.|-|.--..|
T Consensus 638 l~~~~~v-~~pE-----D~q~RlVsRFvNEA~lCL~E-----giL~~P~eGDig--aVFGlGFPPf~G 692 (740)
T TIGR02441 638 LPPKKEV-SSPE-----DIQLRLVSRFVNEAVLCLEE-----GILASPLEGDIG--AVFGLGFPPFLG 692 (740)
T ss_pred CCCCCCC-CCCC-----CCHHHHHHHHHHHHHHHHHC-----CCCCCCCCCCEE--EECCCCCCCCCC
T ss_conf 6778888-8701-----00334456788999986303-----423778887616--662667888885
No 277
>KOG1384 consensus
Probab=41.26 E-value=13 Score=17.26 Aligned_cols=114 Identities=14% Similarity=0.181 Sum_probs=55.0
Q ss_pred CCEEEEEECCC-CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH------------HHHHCCCCCCCCCCCCC
Q ss_conf 98899980687-304899999998614899889999998312999999999------------99843998635673324
Q gi|254780873|r 34 QEVAMVVSAMS-GETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVL------------ALQSLGIQAISLQGWQI 100 (411)
Q Consensus 34 ~~~ivVvSA~~-g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~------------~l~~~G~~a~~l~~~~~ 100 (411)
.+|+|+..|-| |-....++||.+... |.+++-=|.. .-.+.|++.-.+.-
T Consensus 7 ~KVvvI~G~TGsGKSrLaVdLA~rf~~--------------EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~--- 69 (348)
T KOG1384 7 DKVVVIMGATGAGKSRLAVDLATRFPG--------------EIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGH--- 69 (348)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCC--------------EEECCCCEEEECCCCCCCCCCCHHHCCCCCHHHHCC---
T ss_conf 359999557777704667888975786--------------465156335632766201668755407987677076---
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCC--------------EEEECCCCCCHHHHHHHHHHCH
Q ss_conf 55121335520001236210033431068058603433355684--------------2443068624289999988473
Q gi|254780873|r 101 PIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNS--------------VTTLGRGGSDTSAVAIAAAIKA 166 (411)
Q Consensus 101 ~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~--------------~ttlgRGGSD~tA~~ia~~l~A 166 (411)
+--+.++.-+++.+.....+...+..+++||+.|- .+.... ..+.|+=-|++ .=
T Consensus 70 -l~~~~e~t~~~F~~~a~~aie~I~~rgk~PIv~GG--s~~yi~al~~~~~d~~~dp~~~~~g~~pS~l---------ry 137 (348)
T KOG1384 70 -LHPEAEYTAGEFEDDASRAIEEIHSRGKLPIVVGG--SNSYLQALLSKRFDPKIDPFSSNTGSIPSEL---------RY 137 (348)
T ss_pred -CCHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEECC--CHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CC
T ss_conf -88676426999999999999999857997779678--4066899960687745585435678887556---------66
Q ss_pred HHHHHHCCHH
Q ss_conf 4556534614
Q gi|254780873|r 167 DRCDIYTDVC 176 (411)
Q Consensus 167 ~~~~i~tdV~ 176 (411)
|.|.+|-||+
T Consensus 138 d~c~lWlda~ 147 (348)
T KOG1384 138 DCCFLWLDAD 147 (348)
T ss_pred CEEEEEEECC
T ss_conf 5079997266
No 278
>TIGR03526 selenium_YgeY putative selenium metabolism hydrolase. SelD, selenophosphate synthase, is the selenium donor protein for both selenocysteine and selenouridine biosynthesis systems, but it occurs also in a few prokaryotes that have neither of those pathways. The method of partial phylogenetic profiling, starting from such orphan-selD genomes, identifies this protein as one of those most strongly correlated to SelD occurrence. Its distribution is also well correlated with that of family TIGR03309, a putative accessory protein of labile selenium (non-selenocysteine) enzyme maturation. This family includes the uncharacterized YgeY of Escherichia coli, and belongs to a larger family of metalloenzymes in which some are known peptidases, others enzymes of different types.
Probab=40.96 E-value=25 Score=15.33 Aligned_cols=97 Identities=14% Similarity=0.241 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89999999861489988999999831299999999999843998635673324551213355200012362100334310
Q gi|254780873|r 48 DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKK 127 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~ 127 (411)
|.++++.+++-..+++. --|.--+..++.+|++.|+....+++.-- ++ +++. .....+ +-.
T Consensus 13 ~e~v~ll~~LV~ipS~s-------g~e~~~a~~l~~~l~~~Gf~~~~id~~~n-v~-------~~~g-~g~~~l---~l~ 73 (395)
T TIGR03526 13 GDMIRFLRDLVAIPSES-------GDEGRVALRIKQEMEKLGFDKVEIDPMGN-VL-------GYIG-HGPKLI---AMD 73 (395)
T ss_pred HHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCCEEEECCCCC-EE-------EEEC-CCCCEE---EEE
T ss_conf 77999999982899939-------67899999999999878997799878885-89-------9958-999669---997
Q ss_pred CCEEEEE-----C-----CCCCCCCCCEEEECCCCCCHHHHHHHHHHC
Q ss_conf 6805860-----3-----433355684244306862428999998847
Q gi|254780873|r 128 KQVVVIT-----G-----FQGLSHDNSVTTLGRGGSDTSAVAIAAAIK 165 (411)
Q Consensus 128 ~~v~v~~-----G-----f~g~~~~g~~ttlgRGGSD~tA~~ia~~l~ 165 (411)
+++=+|| + |-+.-.+|. .+|||-+|.-+.+.|...-
T Consensus 74 gH~DvVp~g~~~~W~~dPf~~~~~dg~--iyGRGa~DmKgglaa~l~A 119 (395)
T TIGR03526 74 AHIDTVGIGDMDQWQFDPYEGYEDEEI--IYGRGASDQEGGIASMVYA 119 (395)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECCE--EEECCCCCCCCHHHHHHHH
T ss_conf 955736999877786899865887999--9823756561259999999
No 279
>TIGR02399 salt_tol_Pase glucosylglycerol 3-phosphatase; InterPro: IPR012765 Proteins in this family are glucosylglycerol-phosphate phosphatases, with the gene symbol stpA (Salt Tolerance Protein A). A motif characteristic of acid phosphatases is found, but otherwise this family shows little sequence similarity to other phosphatases. This enzyme acts on the glucosylglycerol phosphate, product of glucosylglycerol phosphate synthase and immediate precursor of the osmoprotectant glucosylglycerol..
Probab=40.55 E-value=23 Score=15.67 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=11.3
Q ss_pred CEEEECCCCCCHHHHHHHHHHCH
Q ss_conf 42443068624289999988473
Q gi|254780873|r 144 SVTTLGRGGSDTSAVAIAAAIKA 166 (411)
Q Consensus 144 ~~ttlgRGGSD~tA~~ia~~l~A 166 (411)
.++-+-|||||..---+=.-|++
T Consensus 305 ~~~g~~RGGSDR~FL~liQ~LG~ 327 (401)
T TIGR02399 305 DTTGYRRGGSDRSFLELIQDLGD 327 (401)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 87831237865789999997315
No 280
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component; InterPro: IPR014350 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) , is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC . These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose , , , . According to structural and sequence analyses, the PTS EIIB domain (2.7.1.69 from EC) can be divided in five groups , , : The PTS EIIB type 1 domain, which is found in the Glucose class of PTS, has an average length of about 80 amino acids. It forms a split alpha/beta sandwich composed of an antiparallel sheet (beta 1 to beta 4) and three alpha helices superimposed onto one side of the sheet. The phosphorylation site (Cys) is located at the end of the first beta strand on a protrusion formed by the edge of beta 1 and the reverse turn between beta 1 and beta 2 . The PTS EIIB type 2 domain, which is found in the Mannitol class of PTS, has an average length of about 100 amino acids. It consists of a four stranded parallel beta sheet flanked by two alpha helices (alpha 1 and 3) on one face and helix alpha 2 on the opposite face, with a characteristic Rossmann fold comprising two right-handed beta-alpha-beta motifs. The phosphorylation site (Cys) is located at the N-terminus of the domain, in the first beta strand. The PTS EIIB type 3 domain, which is found in the Lactose class of PTS, has an average length of about 100 amino acids. It is composed of a central four-stranded parallel open twisted beta sheet, which is flanked by three alpha helices on the concave side and two on the convex side of the beta sheet. The phosphorylation site (Cys) is located in the C-terminal end of the first beta strand . The PTS EIIB type 4 domain, which is found in the Mannose class of PTS, has an average length of about 160 amino acids. It has a central core of seven parallel beta strands surrounded by a total of six alpha-helices. Three helices cover the front face, one the back face with the remaining two capping the central beta sheet at the top and bottom. The phosphorylation site (His) is located at the suface exposed loop between strand 1 and helix 1 . The PTS EIIB type 5 domain, which is found in the Sorbitol class of PTS, has an average length of about 190 amino acids. The phosphorylation site (Cys) is located in the N-terminus of the domain. The EIIB type 3 protein is often found downstream of EIIC type 3. This entry hits fewer proteins than IPR013012 from INTERPRO. .
Probab=38.03 E-value=28 Score=15.03 Aligned_cols=68 Identities=21% Similarity=0.177 Sum_probs=33.6
Q ss_pred CEEEEEECCCCHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCC
Q ss_conf 8899980687304899999998614899----------------889999998312999999--9999984399863567
Q gi|254780873|r 35 EVAMVVSAMSGETDRLAELCRQVTSIDN----------------ARERDVVISTGEQVSSGL--MVLALQSLGIQAISLQ 96 (411)
Q Consensus 35 ~~ivVvSA~~g~Td~L~~l~~~~~~~~~----------------~~~~d~i~s~GE~~s~~l--~a~~l~~~G~~a~~l~ 96 (411)
.|.|+|+| |++|-.|..-.++...... ..+.|.+ =.|=++...+ |......+|||-..++
T Consensus 48 ~iLl~Caa-GmstsLLv~~l~k~A~~~~~~~~i~A~~~~~~~e~~~~~d~V-lLaPQ~~~~~~~lk~~t~~~Gip~~~i~ 125 (142)
T TIGR00853 48 NILLLCAA-GMSTSLLVNKLNKAAKEYGVPVKIAAVSYGAAMEILDDADVV-LLAPQVAYMLPDLKKETDKKGIPVEVIN 125 (142)
T ss_pred EEEEEECC-CCCHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHCEE-EEHHHHHHHHHHHHHHCCCCCCCEEEEC
T ss_conf 16888769-735478999999999845997588840576344335350431-1203267557999985135897536638
Q ss_pred CCCCCCCC
Q ss_conf 33245512
Q gi|254780873|r 97 GWQIPIMT 104 (411)
Q Consensus 97 ~~~~~i~t 104 (411)
+.+.+-++
T Consensus 126 ~~~Yg~~~ 133 (142)
T TIGR00853 126 GAQYGKLT 133 (142)
T ss_pred CCCCEEEC
T ss_conf 70020043
No 281
>KOG2567 consensus
Probab=37.35 E-value=29 Score=14.96 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=29.9
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 5888999999999999996799889998068730489999999
Q gi|254780873|r 13 VANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55 (411)
Q Consensus 13 v~~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~ 55 (411)
|.+...++++..--....+++.-.-||.|++|+.+.+-+.+++
T Consensus 23 V~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaE 65 (179)
T KOG2567 23 VKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAE 65 (179)
T ss_pred ECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEEEHHH
T ss_conf 7167327789999999862787007999447852100266999
No 282
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=36.83 E-value=11 Score=17.80 Aligned_cols=102 Identities=25% Similarity=0.249 Sum_probs=49.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHH
Q ss_conf 98635673324551213355200012362100334310680586034333556842443068624289999988473455
Q gi|254780873|r 90 IQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169 (411)
Q Consensus 90 ~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~ 169 (411)
+|+..++....--+-|+.|+..+-.--...+-.+.+-.|+.+||.|| -.-||| -|..+..++|+
T Consensus 171 fPai~VNDs~tK~~FDNrYGtgqS~~DgI~RaTn~liaGK~vVV~GY---------G~vGrG-----~A~~~rg~GA~-- 234 (420)
T COG0499 171 FPAINVNDSVTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGY---------GWVGRG-----IAMRLRGMGAR-- 234 (420)
T ss_pred CCEEEECCHHHHCCCCCCCCCCHHHHHHHHHHHCEEECCCEEEEECC---------CCCCHH-----HHHHHHCCCCE--
T ss_conf 35586043444131456656412489999864200114866999635---------644366-----99986228986--
Q ss_pred HHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 65346144024584212344110567999999988403110137887643313852676112
Q gi|254780873|r 170 DIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 170 ~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
.|.|+|| | --|+|-++=|..|. +++-+.+.+ .|+|..|
T Consensus 235 ViVtEvD------P--------------I~AleA~MdGf~V~---~m~~Aa~~g-DifiT~T 272 (420)
T COG0499 235 VIVTEVD------P--------------IRALEAAMDGFRVM---TMEEAAKTG-DIFVTAT 272 (420)
T ss_pred EEEEECC------C--------------HHHHHHHHCCCEEE---EHHHHHHCC-CEEEECC
T ss_conf 9998248------1--------------78899863571887---866744218-9899866
No 283
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=36.35 E-value=30 Score=14.85 Aligned_cols=16 Identities=19% Similarity=0.247 Sum_probs=10.2
Q ss_pred CCHHHHHHHHCCCCEE
Q ss_conf 1000145541285011
Q gi|254780873|r 281 SASIFSPLAEAHINID 296 (411)
Q Consensus 281 ~a~If~~La~~~I~Vd 296 (411)
+.++..-|.++||-|-
T Consensus 460 AEdLTdYl~E~Gikv~ 475 (667)
T TIGR00631 460 AEDLTDYLKELGIKVR 475 (667)
T ss_pred HHHHHHHHHCCCCEEE
T ss_conf 8899999705883798
No 284
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.26 E-value=30 Score=14.84 Aligned_cols=22 Identities=36% Similarity=0.720 Sum_probs=12.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0004841000145541285011
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID 296 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd 296 (411)
.|.||.+++|+.+|++.++||-
T Consensus 8 ~DRPGLLsei~avLsdl~~~v~ 29 (74)
T cd04925 8 TDRPGLLSEVFAVLADLHCNVV 29 (74)
T ss_pred CCCCCHHHHHHHHHHHCCCCEE
T ss_conf 9987269999999986878458
No 285
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=35.82 E-value=28 Score=15.00 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=30.2
Q ss_pred HHHHHHHHHHCHH---HHHHHCCHHHHEECCCCCCCCCCEECCCC
Q ss_conf 2899999884734---55653461440245842123441105679
Q gi|254780873|r 155 TSAVAIAAAIKAD---RCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196 (411)
Q Consensus 155 ~tA~~ia~~l~A~---~~~i~tdV~Gi~taDPr~v~~a~~i~~ls 196 (411)
|||-.+..++++. ..-+.|.--|++-++--+.-+|.+-+.++
T Consensus 129 tTal~l~~~l~~~Gi~a~fiaTGQTGili~g~Gv~iDav~~DFva 173 (302)
T pfam07755 129 TTALELERALRERGLNAAFVATGQTGILIAGYGVPLDAVPADFVA 173 (302)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCEEEECCCHHHHHH
T ss_conf 999999999997799847997276136881524784322476676
No 286
>PRK05443 polyphosphate kinase; Provisional
Probab=35.82 E-value=3.4 Score=21.17 Aligned_cols=70 Identities=26% Similarity=0.405 Sum_probs=42.3
Q ss_pred CCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEE--------------ECCCCCCHHHHHHHHHHCHHHHHHHCCH
Q ss_conf 20001236210033431068058603433355684244--------------3068624289999988473455653461
Q gi|254780873|r 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTT--------------LGRGGSDTSAVAIAAAIKADRCDIYTDV 175 (411)
Q Consensus 110 ~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~tt--------------lgRGGSD~tA~~ia~~l~A~~~~i~tdV 175 (411)
.|++++.+-=.-++.|++..+-|+-|+.|.-.+-+++. +|-| .| +..--.+|||
T Consensus 405 kARFDEe~NI~wA~~Le~aGv~ViYG~~glKvHaK~~LI~Rre~~~~~~Y~higTG--Ny---------n~~TA~~YtD- 472 (692)
T PRK05443 405 KARFDEEANIRWARRLEEAGVHVVYGVVGLKTHAKLALVVRREGGKLRRYVHLGTG--NY---------NPKTARLYTD- 472 (692)
T ss_pred CCCCCHHHHHHHHHHHHHCCEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEECCC--CC---------CHHHHHHEEE-
T ss_conf 33406788899999998599299917888500578999999707968999998778--84---------9454646540-
Q ss_pred HHHEECCCCCCCCCCE
Q ss_conf 4402458421234411
Q gi|254780873|r 176 CGIYTTDPRIEPKAHL 191 (411)
Q Consensus 176 ~Gi~taDPr~v~~a~~ 191 (411)
=|+|||||.+..++..
T Consensus 473 ~~l~T~~~~i~~D~~~ 488 (692)
T PRK05443 473 LSLLTADPEIGEDVTR 488 (692)
T ss_pred EEEECCCHHHHHHHHH
T ss_conf 1234268789999999
No 287
>COG3439 Uncharacterized conserved protein [Function unknown]
Probab=34.48 E-value=32 Score=14.66 Aligned_cols=55 Identities=22% Similarity=0.271 Sum_probs=39.4
Q ss_pred CCEECCCCHHHHHH-----HHHCCCCCH----HHHHHHHHHHCCC-EEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 41105679999999-----884031101----3788764331385-267611237777765435454542
Q gi|254780873|r 189 AHLMKKISFEEMLE-----MSSLGAKVM----QVRSVELAMLYKM-CLFVRSSFEDHGQQEQLGTLICSG 248 (411)
Q Consensus 189 a~~i~~lsy~Ea~e-----La~~Gakvl----hp~~~~~~~~~~i-pi~i~ntf~~~~~~~~~GT~I~~~ 248 (411)
-..-..++|+|..+ +..-|++|+ |.++++-.-..++ |..|.+-.+|.. ||.+...
T Consensus 13 ~~~~s~~~~~E~i~~l~~~lk~~G~~V~~~id~~e~l~~~g~~~~~p~~Il~~cnP~~-----g~~ll~~ 77 (137)
T COG3439 13 VTAESKLSFDETIERLEEKLKKNGFKVFTEIDHAEALKNAGVLDIPPYTILVFCNPKA-----GTPLLSK 77 (137)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCCEEEEEECHHHHHHHCCCCCCCCEEEEEECCCCC-----CCHHHCC
T ss_conf 9987338899999999999996897477873489999866867899849999807763-----3244113
No 288
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase; InterPro: IPR010946 This entry represents geranylgeranylglyceryl phosphate synthase which catalyses the first committed step in the synthesis of ether-linked membrane lipids in archaea ..
Probab=34.44 E-value=32 Score=14.65 Aligned_cols=43 Identities=23% Similarity=0.213 Sum_probs=28.0
Q ss_pred CCCCEECCCCHHHHHH--HH--HCCCCC------------HHHHHHHHHHH-C-CCEEEEE
Q ss_conf 3441105679999999--88--403110------------13788764331-3-8526761
Q gi|254780873|r 187 PKAHLMKKISFEEMLE--MS--SLGAKV------------MQVRSVELAML-Y-KMCLFVR 229 (411)
Q Consensus 187 ~~a~~i~~lsy~Ea~e--La--~~Gakv------------lhp~~~~~~~~-~-~ipi~i~ 229 (411)
..+|.||+-.++=|.- || |+|+|. +.|.++...++ . +||+-|.
T Consensus 129 G~~~~Ip~~~~~~A~~Y~LAA~Y~G~~~vYLEAGSGAs~Pv~~e~i~~~k~~~~~I~LIVG 189 (212)
T TIGR01769 129 GKARLIPYDKPEIAAAYALAAKYLGFKLVYLEAGSGASEPVSPETISLVKKKISSIPLIVG 189 (212)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCEEEC
T ss_conf 0012589986668999999998741351213105786667866799999985489727752
No 289
>TIGR03320 ygeY M20/DapE family protein YgeY. Members of this protein family, including the YgeY protein of Escherichia coli, typically are found in extended genomic regions associated with purine catabolism. Homologs include peptidases and deacylases of the M20/M25 /M40 and DapE/ArgE families. The function is unknown.
Probab=33.63 E-value=33 Score=14.57 Aligned_cols=97 Identities=13% Similarity=0.251 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 48999999986148998899999983129999999999984399863567332455121335520001236210033431
Q gi|254780873|r 47 TDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLK 126 (411)
Q Consensus 47 Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~ 126 (411)
-|.++++++++-..+++. --|.--+..++.+|++.|+....+++..- ++ +++-. .... .+-
T Consensus 12 ~~e~v~ll~~LV~ipS~s-------g~e~~~a~~l~~~l~~~G~~~~~vd~~~n-v~-------~~~g~-g~~~---l~l 72 (395)
T TIGR03320 12 RGDMIRFLRDLVAIPSES-------GDEKRVAERIKEEMEKLGFDKVEIDPMGN-VL-------GYIGH-GPKL---IAM 72 (395)
T ss_pred HHHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCCEEEECCCCC-EE-------EEECC-CCCE---EEE
T ss_conf 688999999982899939-------78899999999999878997799878883-89-------99589-9976---999
Q ss_pred HCCEEEEE-----C-----CCCCCCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 06805860-----3-----43335568424430686242899999884
Q gi|254780873|r 127 KKQVVVIT-----G-----FQGLSHDNSVTTLGRGGSDTSAVAIAAAI 164 (411)
Q Consensus 127 ~~~v~v~~-----G-----f~g~~~~g~~ttlgRGGSD~tA~~ia~~l 164 (411)
.+++=+|| + |-+.-.+| ..+|||-+|.-+.+.|...
T Consensus 73 ~gH~DvVP~g~~~~W~~dPf~~~i~dg--~iyGRGa~DmKgglaa~l~ 118 (395)
T TIGR03320 73 DAHIDTVGIGDSKQWQFDPYEGYEDEE--IIYGRGASDQEGGIASMVY 118 (395)
T ss_pred ECCCCCCCCCCCCCCCCCCCCCEEECC--EEECCCCCCCCCHHHHHHH
T ss_conf 795477799986678689986688799--9970474445245999999
No 290
>COG4669 EscJ Type III secretory pathway, lipoprotein EscJ [Intracellular trafficking and secretion]
Probab=33.21 E-value=33 Score=14.52 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=10.4
Q ss_pred HHHHHHHHHCCCCCCCCCC
Q ss_conf 9999999843998635673
Q gi|254780873|r 79 GLMVLALQSLGIQAISLQG 97 (411)
Q Consensus 79 ~l~a~~l~~~G~~a~~l~~ 97 (411)
.=|-+.|.++|++|.-...
T Consensus 34 NemlAlL~~~gI~A~K~~~ 52 (246)
T COG4669 34 NEMLALLMSHGINAEKKAD 52 (246)
T ss_pred HHHHHHHHHCCCCCEEECC
T ss_conf 8999999985976011046
No 291
>TIGR00936 ahcY adenosylhomocysteinase; InterPro: IPR000043 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD^+ as a cofactor. AdoHcyase is a highly conserved protein of about 430 to 470 amino acids. The family contains a glycine-rich region in the central part of AdoHcyase; a region thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon compound metabolic process.
Probab=33.00 E-value=18 Score=16.37 Aligned_cols=105 Identities=22% Similarity=0.239 Sum_probs=56.7
Q ss_pred HHHCC---CCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHH
Q ss_conf 98439---98635673324551213355200--01236210033431068058603433355684244306862428999
Q gi|254780873|r 85 LQSLG---IQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVA 159 (411)
Q Consensus 85 l~~~G---~~a~~l~~~~~~i~t~~~~~~a~--~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ 159 (411)
+...| +|+..++....=.+=|+.||..+ ++. ..+-.+.|-.|+.+||.|| =.-||| -|.
T Consensus 165 m~~~G~L~fP~i~VNDa~tK~~FDNrYGtg~S~~DG--i~RaTn~LiAGk~vVVaGY---------Gw~G~G-----~A~ 228 (422)
T TIGR00936 165 MEREGVLKFPVIAVNDAYTKYLFDNRYGTGQSTIDG--ILRATNLLIAGKTVVVAGY---------GWCGKG-----IAM 228 (422)
T ss_pred HHHCCCCCCCEEEECCCHHHHHHCCCCCCCCCHHHH--HHHHHHHHHCCCEEEEECC---------CCCCHH-----HHH
T ss_conf 996698314446505301213212775576302434--4566557553887899703---------863078-----999
Q ss_pred HHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 998847345565346144024584212344110567999999988403110137887643313852676112
Q gi|254780873|r 160 IAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 160 ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
-+..++|+.+. |+|| +=.|+|=+.=|.+|+ .++-|.+.+ .|+|.-|
T Consensus 229 r~~G~GA~V~V--tEvd--------------------Pi~ALeA~MdGF~V~---~m~eA~~~g-difiT~T 274 (422)
T TIGR00936 229 RARGLGARVIV--TEVD--------------------PIRALEAAMDGFRVM---TMEEAAKIG-DIFITAT 274 (422)
T ss_pred HHHCCCCEEEE--EEEC--------------------CHHHHHHCCCCCEEE---EHHHHHHHC-CEEEECC
T ss_conf 85059977999--8207--------------------336887314783341---178875509-8899815
No 292
>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=31.83 E-value=35 Score=14.38 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHCCCEEEEEEECCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 5579999999986798299997078489999708899999999998709
Q gi|254780873|r 359 AGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYG 407 (411)
Q Consensus 359 ~Giaakif~aL~~~~InI~~issSe~~IS~VV~~~d~~~Av~~LH~~F~ 407 (411)
.....+++..+.+.||.+.--.-...-+|....++|.+++++++.++|-
T Consensus 378 ~~~~~~~~~~ml~~Gv~~~p~~~~~~~ls~~hTe~dId~~l~a~d~al~ 426 (429)
T PRK12389 378 GEAFGKFFKLMLNQGINLAPSKYEAWFLTTEHTEEDIEETIKAVDRAFA 426 (429)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 9999999999997886456867777416467899999999999999999
No 293
>PRK03298 hypothetical protein; Provisional
Probab=31.12 E-value=27 Score=15.11 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=8.8
Q ss_pred CCCHHHHHHHHHHHCCCEEE
Q ss_conf 85579999999986798299
Q gi|254780873|r 358 YAGVASAFFLCLAEKGINIK 377 (411)
Q Consensus 358 ~~Giaakif~aL~~~~InI~ 377 (411)
.|.|..++-.-|.+.||...
T Consensus 187 Ap~It~~Ar~Ll~drGie~v 206 (224)
T PRK03298 187 AQQIKPQARTLATDRGIRCV 206 (224)
T ss_pred CCCCCHHHHHHHHHCCCCEE
T ss_conf 87478879999997697289
No 294
>PRK07906 hypothetical protein; Provisional
Probab=30.57 E-value=37 Score=14.24 Aligned_cols=111 Identities=20% Similarity=0.299 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCHHH
Q ss_conf 30489999999861489988999999831299999999999843998635673324551213355-20001236210033
Q gi|254780873|r 45 GETDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHG-MARICRVDEKKIVT 123 (411)
Q Consensus 45 g~Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~-~a~~~~~~~~~l~~ 123 (411)
...|.++++++++-..++.-- +---+-+|+-.+..+..+|++.|++...+... .+... -+++...+.. ...
T Consensus 7 ~~~~e~v~ll~~Li~i~svnp-~~~~~~~e~~~a~~l~~~l~~~G~~~~~~~~~------~gr~nlva~~~G~~~~-~~~ 78 (437)
T PRK07906 7 DAEDEVVDLCSELIRFDTSNT-GDGDTKGEREAAEYVAEQLAEVGLEPEYVESG------PGRGNVVARIPGADPS-RGA 78 (437)
T ss_pred CCHHHHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCEEEEECC------CCCEEEEEEECCCCCC-CCE
T ss_conf 744799999999958899899-98898059999999999999779957999458------9950899997788899-986
Q ss_pred HHHHCCEEEEEC---------CCCCCCCCCEEEECCCCCCHHHHHHHHHHCH
Q ss_conf 431068058603---------4333556842443068624289999988473
Q gi|254780873|r 124 HLKKKQVVVITG---------FQGLSHDNSVTTLGRGGSDTSAVAIAAAIKA 166 (411)
Q Consensus 124 ~l~~~~v~v~~G---------f~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A 166 (411)
.+-.+.+=|||. |-+.-.+|. .+|||-+|.-+.+ |+++-|
T Consensus 79 lll~gH~DVVP~~~~~Wt~~PF~~~i~dG~--iyGRGa~DmKg~~-aa~l~a 127 (437)
T PRK07906 79 LLVHGHLDVVPAEAADWSVHPFSGEIKDGY--VWGRGAVDMKDMD-AMMLAV 127 (437)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCEECCCE--EEECCCCCCCHHH-HHHHHH
T ss_conf 999799673799945376799665761885--9951444553039-999999
No 295
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase; InterPro: IPR006273 This group of sequences are a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori (Campylobacter pylori), Mesorhizobium loti, and related species. ; GO: 0004588 orotate phosphoribosyltransferase activity, 0019856 pyrimidine base biosynthetic process.
Probab=30.53 E-value=37 Score=14.23 Aligned_cols=77 Identities=14% Similarity=0.090 Sum_probs=35.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHH----HEEC-CCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHH
Q ss_conf 684244306862428999998847345565346144----0245-84212344110567999999988403110137887
Q gi|254780873|r 142 DNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCG----IYTT-DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSV 216 (411)
Q Consensus 142 ~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~G----i~ta-DPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~ 216 (411)
++-+|| |||=.-++-+=.-.+++.+-.-.=||= |-+. .||+ ++++...-+-+.-..+| -..+ ++..-
T Consensus 118 EDvvTT---GGS~~e~~~~i~~~GG~vvg~a~iidRGfCaven~~sPrk-d~~k~~~g~PL~sL~~L---~~~~-Y~~~~ 189 (205)
T TIGR01367 118 EDVVTT---GGSLLEAIKAIEELGGQVVGLACIIDRGFCAVENSKSPRK-DGGKVDVGVPLISLKEL---EFPV-YDEEE 189 (205)
T ss_pred EEEECC---CHHHHHHHHHHHHCCCCEEEEEEHHCCCHHHHHCCCCCCC-CCCCCCCCCHHHHHHHC---CCCC-CCCCC
T ss_conf 621104---7448999999985798279842112041111110368632-47888877515656423---6767-78203
Q ss_pred HHHHHCCCEE
Q ss_conf 6433138526
Q gi|254780873|r 217 ELAMLYKMCL 226 (411)
Q Consensus 217 ~~~~~~~ipi 226 (411)
-|.++.++|+
T Consensus 190 ~P~~~~~~p~ 199 (205)
T TIGR01367 190 CPLCKAGIPA 199 (205)
T ss_pred CCHHHHCCCC
T ss_conf 7865726876
No 296
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=30.41 E-value=22 Score=15.68 Aligned_cols=24 Identities=38% Similarity=0.634 Sum_probs=13.1
Q ss_pred CEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 805860343335568424430686242
Q gi|254780873|r 129 QVVVITGFQGLSHDNSVTTLGRGGSDT 155 (411)
Q Consensus 129 ~v~v~~Gf~g~~~~g~~ttlgRGGSD~ 155 (411)
++++=.||-|-|.+| |.||||--+
T Consensus 25 Kv~ld~GF~CPNRDG---ti~rGGCtF 48 (312)
T COG1242 25 KVTLDGGFSCPNRDG---TIGRGGCTF 48 (312)
T ss_pred EEECCCCCCCCCCCC---CCCCCCEEE
T ss_conf 985357778999999---626786465
No 297
>TIGR03586 PseI pseudaminic acid synthase.
Probab=30.34 E-value=37 Score=14.21 Aligned_cols=44 Identities=16% Similarity=0.062 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCCCCEECCCCHHHHHHHH
Q ss_conf 428999998847345565346144024584212344110567999999988
Q gi|254780873|r 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS 204 (411)
Q Consensus 154 D~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~eLa 204 (411)
++.+++.|.+++|..+| +. ||-|... ++.--.-.++++|..+|-
T Consensus 204 g~~~~~~Ava~GA~iIE--KH----fTld~~~-~g~Dh~~Sl~p~e~~~~v 247 (327)
T TIGR03586 204 GILAPVAAVALGACVIE--KH----FTLDRSD-GGVDSAFSLEPDEFKALV 247 (327)
T ss_pred CCHHHHHHHHCCCEEEE--EE----EECCCCC-CCCCHHHCCCHHHHHHHH
T ss_conf 82679999986994999--87----7768999-998667609999999999
No 298
>pfam09967 DUF2201 Predicted metallopeptidase (DUF2201). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=28.25 E-value=30 Score=14.81 Aligned_cols=12 Identities=0% Similarity=-0.147 Sum_probs=6.1
Q ss_pred HHHHHHHHCCCE
Q ss_conf 999999867982
Q gi|254780873|r 364 AFFLCLAEKGIN 375 (411)
Q Consensus 364 kif~aL~~~~In 375 (411)
-+|..+.++.-.
T Consensus 360 pvf~~~~~~~p~ 371 (412)
T pfam09967 360 PVLEAALRLRPD 371 (412)
T ss_pred HHHHHHHHCCCC
T ss_conf 899999826997
No 299
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=28.21 E-value=26 Score=15.23 Aligned_cols=16 Identities=31% Similarity=0.567 Sum_probs=7.8
Q ss_pred HHHHHCC-HHHHEECCC
Q ss_conf 5565346-144024584
Q gi|254780873|r 168 RCDIYTD-VCGIYTTDP 183 (411)
Q Consensus 168 ~~~i~td-V~Gi~taDP 183 (411)
+++.|-| |+.|..-||
T Consensus 214 RIeffgDeIE~I~~~Dp 230 (657)
T PRK05298 214 RIEFFGDEIERISEFDP 230 (657)
T ss_pred EEEEECCCEEEEEEECC
T ss_conf 99995780628999827
No 300
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=27.97 E-value=35 Score=14.42 Aligned_cols=22 Identities=41% Similarity=0.613 Sum_probs=18.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 9999999984399863567332
Q gi|254780873|r 78 SGLMVLALQSLGIQAISLQGWQ 99 (411)
Q Consensus 78 ~~l~a~~l~~~G~~a~~l~~~~ 99 (411)
+.++.+.++..|++|+.+.+.-
T Consensus 13 A~l~~~l~R~~GipaR~v~G~~ 34 (68)
T smart00460 13 AALFVALLRSLGIPARVVSGYL 34 (68)
T ss_pred HHHHHHHHHHCCCCEEEEEEEE
T ss_conf 9999999998799879997765
No 301
>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional
Probab=27.82 E-value=41 Score=13.93 Aligned_cols=74 Identities=20% Similarity=0.239 Sum_probs=29.8
Q ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88999999999999996799889998068730---489999999861489988999999831299999999999843998
Q gi|254780873|r 15 NIDCIRSAALHVKREVDRGQEVAMVVSAMSGE---TDRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQ 91 (411)
Q Consensus 15 ~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~---Td~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~ 91 (411)
+.+.+.++.+.+. +-|... |+.| ||. -..+.++++.+....- .-.+.+-|-.++-. ++..|.+.|+.
T Consensus 48 s~~e~~~~id~l~---~~Gv~~-v~~t--GGEPllr~D~~ei~~~a~~~G~---~~~l~TNG~lit~~-~a~~L~~~gl~ 117 (375)
T PRK05301 48 STAEWIRVLREAR---ALGVLQ-LHFS--GGEPLLRKDLEELVAHARRLGL---YTNLITSGVGLTEA-RLAALKAAGLD 117 (375)
T ss_pred CHHHHHHHHHHHH---HCCCCE-EEEC--CCCCCCCCCHHHHHHHHHHCCC---EEEEEECCCCCCHH-HHHHHHHHCCC
T ss_conf 9999999999999---869988-9961--8652456689999999997697---58996067455799-99999850998
Q ss_pred CC--CCCCC
Q ss_conf 63--56733
Q gi|254780873|r 92 AI--SLQGW 98 (411)
Q Consensus 92 a~--~l~~~ 98 (411)
.+ .+|+.
T Consensus 118 ~v~vSlDg~ 126 (375)
T PRK05301 118 HIQLSFQDS 126 (375)
T ss_pred EEEEECCCC
T ss_conf 899956779
No 302
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=27.19 E-value=42 Score=13.85 Aligned_cols=12 Identities=17% Similarity=-0.011 Sum_probs=5.6
Q ss_pred CCEEEEECCEEE
Q ss_conf 615897489169
Q gi|254780873|r 336 YDVIQHEDNLVK 347 (411)
Q Consensus 336 ~~~I~~~~~~a~ 347 (411)
-+.+-+..|-.+
T Consensus 273 e~Rv~v~gnkTV 284 (287)
T COG0788 273 EDRVFVNGNKTV 284 (287)
T ss_pred CCEEEEECCEEE
T ss_conf 242898088578
No 303
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=27.13 E-value=37 Score=14.23 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=12.0
Q ss_pred HHHHHHHHHHCCCCCC-CCC
Q ss_conf 9999999984399863-567
Q gi|254780873|r 78 SGLMVLALQSLGIQAI-SLQ 96 (411)
Q Consensus 78 ~~l~a~~l~~~G~~a~-~l~ 96 (411)
+..-+..|++.|++.+ .+.
T Consensus 71 S~~Aa~~L~~~Gy~~V~~l~ 90 (379)
T PRK08762 71 SAHAAADLRELGYRRVASVA 90 (379)
T ss_pred HHHHHHHHHHCCCCCCEECC
T ss_conf 99999999976996608865
No 304
>TIGR02068 cya_phycin_syn cyanophycin synthetase; InterPro: IPR011810 Cyanophycin is an insoluble storage polymer for carbon, nitrogen, and energy, found in most Cyanobacteria. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine. The polymer is made by this enzyme, cyanophycin synthetase, and degraded by cyanophycinase. Heterologously expressed cyanophycin synthetase in Escherichia coli produces a closely related, water-soluble polymer with some Arg replaced by Lys. It is unclear whether enzymes that produce soluble cyanophycin-like polymers in vivo in non-Cyanobacterial species should be designated as cyanophycin synthetase itself or as a related enzyme. Cyanophycin synthesis is analogous to polyhydroxyalkanoic acid (PHA) biosynthesis, except that PHA polymers lack nitrogen and may be made under nitrogen-limiting conditions .; GO: 0005524 ATP binding, 0016874 ligase activity, 0009059 macromolecule biosynthetic process.
Probab=26.91 E-value=30 Score=14.81 Aligned_cols=48 Identities=17% Similarity=0.292 Sum_probs=28.1
Q ss_pred HHCCEEEEECCCCCC-CCCCEEEECCCCCCHHHHHHHHHHCHH-HHHHHCCHHHHEECCCCCC
Q ss_conf 106805860343335-568424430686242899999884734-5565346144024584212
Q gi|254780873|r 126 KKKQVVVITGFQGLS-HDNSVTTLGRGGSDTSAVAIAAAIKAD-RCDIYTDVCGIYTTDPRIE 186 (411)
Q Consensus 126 ~~~~v~v~~Gf~g~~-~~g~~ttlgRGGSD~tA~~ia~~l~A~-~~~i~tdV~Gi~taDPr~v 186 (411)
+++.|||+ +.+ .||+||| +-++|..|+.. ...=+|..||+|=.|-++-
T Consensus 484 ~~grIPiV----~vTGTNGKTt~---------~RL~Ahil~~~G~~vG~T~tDG~Yi~~~~v~ 533 (876)
T TIGR02068 484 DDGRIPIV----AVTGTNGKTTT---------TRLVAHILKQTGKVVGMTTTDGVYIGKKLVE 533 (876)
T ss_pred CCCCEEEE----EEECCCCCHHH---------HHHHHHHHHHCCCEEEEEECCCEEECCEEEE
T ss_conf 89834488----87268983557---------8899999985698276420376775576662
No 305
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type; InterPro: IPR011839 Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from the pullulanases of Gram-positive bacteria (IPR011838 from INTERPRO).; GO: 0051060 pullulanase activity, 0005975 carbohydrate metabolic process.
Probab=26.70 E-value=41 Score=13.94 Aligned_cols=35 Identities=20% Similarity=0.178 Sum_probs=24.0
Q ss_pred HHHHCCHHHHEECCCCCC-------CCCCEECCCCHHHHHHH
Q ss_conf 565346144024584212-------34411056799999998
Q gi|254780873|r 169 CDIYTDVCGIYTTDPRIE-------PKAHLMKKISFEEMLEM 203 (411)
Q Consensus 169 ~~i~tdV~Gi~taDPr~v-------~~a~~i~~lsy~Ea~eL 203 (411)
-.-|-+-+|=|++||+-+ +|=.+.+.++|.-|.|+
T Consensus 673 ~l~Y~gaPaGYa~~P~E~inYVSkHDNqTLwD~~~lK~a~~~ 714 (945)
T TIGR02103 673 ELDYNGAPAGYAADPTETINYVSKHDNQTLWDAVSLKIAAET 714 (945)
T ss_pred CEECCCCCHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 200178532102588224654460676107889871120168
No 306
>TIGR02544 III_secr_YscJ type III secretion apparatus lipoprotein, YscJ/HrcJ family; InterPro: IPR003282 Secretion of virulence factors in Gram-negative bacteria involves transportation of the protein across two membranes to reach the cell exterior. There have been four secretion systems described in animal enteropathogens such as Salmonella and Yersinia, with further sequence similarities in plant pathogens like Ralstonia and Erwinia. The type III secretion system is of great interest as it is used to transport virulence factors from the pathogen directly into the host cell and is only triggered when the bacterium comes into close contact with the host. The protein subunits of the system are very similar to those of bacterial flagellar biosynthesis . However, while the latter forms a ring structure to allow secretion of flagellin and is an integral part of the flagellum itself, type III subunits in the outer membrane translocate secreted proteins through a channel-like structure. One of the outer membrane protein subunit families, termed "K" here for nomenclature purposes, aids in the structural assembly of the invasion complex . It is also described as a lipoprotein. Members of this family include the Salmonella PrgK and SsaJ genes, MxiJ from Shigella, YscJ from Yersinia, and from the plant enteropathogens NolT (Rhizobium) and HrcJ Erwinia). The flagellar M-ring protein FliF also shares a low level of similarity, presumably due to evolution of the type III secretion system from the flagellar biosynthetic pathway.; GO: 0009306 protein secretion.
Probab=26.60 E-value=43 Score=13.78 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=6.7
Q ss_pred CEEECCHHHHHHHHHHHH
Q ss_conf 012123024776688789
Q gi|254780873|r 311 ITFTTPSSSLEKALAVLS 328 (411)
Q Consensus 311 Isf~i~~~d~~~~~~~L~ 328 (411)
++..+++.|+-.+.++|+
T Consensus 63 ~~~~Ve~~~~~~A~~lL~ 80 (203)
T TIGR02544 63 YTISVEESDFARAVELLR 80 (203)
T ss_pred EEEECCHHHHHHHHHHHH
T ss_conf 898618789999999998
No 307
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase; InterPro: IPR010039 This entry describes a small family of highly conserved proteins (>60 0dentity). Two of these, BcbF and EcbF of Pasteurella multocida are believed to be part of the capsule polysaccharide biosynthesis machinery because they are co-transcribed from a locus devoted to that purpose . In P. multocida there are six different variant capsules (A-F), and these proteins are found only in B and E. The other two species in which this gene is (currently) found are both also pathogenic. These proteins are also members of the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. All of the characterised enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in this subfamily..
Probab=26.53 E-value=43 Score=13.78 Aligned_cols=107 Identities=17% Similarity=0.171 Sum_probs=58.6
Q ss_pred CCEEEEEECCCCCC-------CHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 96699960858458-------88999999999999996799889998068730489999999861489988999999831
Q gi|254780873|r 1 MARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSIDNARERDVVISTG 73 (411)
Q Consensus 1 M~~iV~KfGGtSv~-------~~~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~Td~L~~l~~~~~~~~~~~~~d~i~s~G 73 (411)
||++|+-.-||-.. +++=+..|.+.++.....|.+++ +.||..=-| .-..+.. -+..+
T Consensus 1 MK~lv~DLD~TIT~~~~~DY~N~~P~~~Vi~~L~~YK~lGF~i~-IsssRNMRT-----Y~GNvG~-INI~T-------- 65 (126)
T TIGR01689 1 MKRLVMDLDNTITLTENGDYANVKPIKAVIEKLREYKALGFEIV-ISSSRNMRT-----YEGNVGK-INIHT-------- 65 (126)
T ss_pred CCEEEEECCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EECCCCCCC-----CCCCCCC-CHHHH--------
T ss_conf 94478743783631257873235506899999998874687898-865656532-----1376141-21202--------
Q ss_pred HHHHHHHHHHHHHHCCCCCCCC---CCC--CCCCCCCCCCCCC-CCCCCCCCCHHHHHH
Q ss_conf 2999999999998439986356---733--2455121335520-001236210033431
Q gi|254780873|r 74 EQVSSGLMVLALQSLGIQAISL---QGW--QIPIMTDSLHGMA-RICRVDEKKIVTHLK 126 (411)
Q Consensus 74 E~~s~~l~a~~l~~~G~~a~~l---~~~--~~~i~t~~~~~~a-~~~~~~~~~l~~~l~ 126 (411)
-.++...|+++.+|-.-+ .|| +-|+..|++--.+ ++...+.+.+..+++
T Consensus 66 ----LP~I~~WL~~H~VPyDEI~vGKPWCG~dGFYvDDRAiRP~EF~~L~~d~I~~l~~ 120 (126)
T TIGR01689 66 ----LPIIIDWLNQHNVPYDEIYVGKPWCGHDGFYVDDRAIRPEEFSSLTYDEIKKLTK 120 (126)
T ss_pred ----HHHHHHHHHHCCCCCCEEEECCCCCCCCCCEECCCCCCCHHHHCCCHHHHHHHHH
T ss_conf ----1268878750699845266448741888835525333821220157789988875
No 308
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=26.47 E-value=35 Score=14.40 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=20.0
Q ss_pred ECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 056799999998840311013788764331385
Q gi|254780873|r 192 MKKISFEEMLEMSSLGAKVMQVRSVELAMLYKM 224 (411)
Q Consensus 192 i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~i 224 (411)
++++|.+||.+|-.-|+-+++-|+-.--....|
T Consensus 1 v~~Isp~ea~~l~~~gavliDVR~~~E~~~ghI 33 (99)
T cd01527 1 LTTISPNDACELLAQGAVLVDIREPDEYLRERI 33 (99)
T ss_pred CCEECHHHHHHHHHCCCEEEECCCHHHHHCCCC
T ss_conf 984799999999978898998898899962789
No 309
>TIGR01212 TIGR01212 radical SAM protein, TIGR01212 family; InterPro: IPR005911 This uncharacterised protein family shows significant similarity to IPR005910 from INTERPRO, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain..
Probab=26.17 E-value=42 Score=13.88 Aligned_cols=107 Identities=13% Similarity=0.181 Sum_probs=51.9
Q ss_pred CCCCCHHCCCCCCC-CCCCCCHHHHHHHHCCCCEE--CCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 46620001277500-04841000145541285011--1234432222333101212302477668878988860596158
Q gi|254780873|r 263 TKDEAQISLRRLRD-HPGISASIFSPLAEAHINID--MIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVI 339 (411)
Q Consensus 263 ~~~i~~Iti~~~~~-~~g~~a~If~~La~~~I~Vd--mI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I 339 (411)
.+++.-+++.--|| .|.-.-++|+.+.+.|..|+ +=.|+..+.. +...--..|+..-.++..+.+++ + |
T Consensus 108 ~~~vVGlsvgTRPDC~P~~VLDlL~ey~~~GyevWvELGLQtah~~T----L~~INRgHd~~~y~~a~~~~~kr-G---i 179 (307)
T TIGR01212 108 EDDVVGLSVGTRPDCVPDEVLDLLAEYKERGYEVWVELGLQTAHDRT----LKKINRGHDFACYVDAVKRARKR-G---I 179 (307)
T ss_pred HCCEEEEEECCCCCCCHHHHHHHHHHHHHCCEEEEEECCCCCHHHHH----HHHHCCCCCHHHHHHHHHHHHHC-C---C
T ss_conf 27805775368898774789999999954975899960535655899----99851437878999999999765-9---8
Q ss_pred EEECCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 9748916999966786678557999999998679829999
Q gi|254780873|r 340 QHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI 379 (411)
Q Consensus 340 ~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~i 379 (411)
.+=.+ -++-+=|+.+.+.- -.+|+...|.=.||-|+..
T Consensus 180 kVC~H-~I~GLPgE~~~~~~-eTak~~~~l~vdGiKiH~L 217 (307)
T TIGR01212 180 KVCSH-VILGLPGEDREEML-ETAKIVASLDVDGIKIHPL 217 (307)
T ss_pred EEEEE-EEECCCCCCHHHHH-HHHHHHHHCCCCEEEEEEE
T ss_conf 89999-87428988888999-9999998379884887201
No 310
>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain. eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.
Probab=26.00 E-value=44 Score=13.71 Aligned_cols=10 Identities=30% Similarity=0.438 Sum_probs=4.2
Q ss_pred EEEEEEECCC
Q ss_conf 1699996678
Q gi|254780873|r 345 LVKISAIGIG 354 (411)
Q Consensus 345 ~a~ISvVG~g 354 (411)
+.++|..|+.
T Consensus 52 VtVlsAmGeE 61 (69)
T cd04468 52 VTVLSAMGEE 61 (69)
T ss_pred EEEEEECCHH
T ss_conf 9996306921
No 311
>COG0616 SppA Periplasmic serine proteases (ClpP class) [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=25.88 E-value=44 Score=13.70 Aligned_cols=73 Identities=14% Similarity=0.050 Sum_probs=37.1
Q ss_pred HHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCC
Q ss_conf 88764331385267611237777765435454542101222310111234662000127750004841000145541285
Q gi|254780873|r 214 RSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHI 293 (411)
Q Consensus 214 ~~~~~~~~~~ipi~i~ntf~~~~~~~~~GT~I~~~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I 293 (411)
+.++-+++.+ |+++- .+..+ -+.|++|...- ++. ++. + -++.|--+.......+-+.+.+.||
T Consensus 120 ~~l~~l~~~~-PV~v~--v~~~A--ASGGY~IA~aA----d~I---~a~-p----~si~GSIGVi~~~~~~~~l~~k~Gv 182 (317)
T COG0616 120 RALKRLRAKK-PVVVS--VGGYA--ASGGYYIALAA----DKI---VAD-P----SSITGSIGVISGAPNFEELLEKLGV 182 (317)
T ss_pred HHHHHHHHCC-CEEEE--ECCCC--CCHHHHHHHCC----CEE---EEC-C----CCCCCCCCEEEECCCHHHHHHHCCC
T ss_conf 9999875329-89999--88732--02899998407----879---877-9----8602135017745668999986598
Q ss_pred CEECCCCCCC
Q ss_conf 0111234432
Q gi|254780873|r 294 NIDMIIQNVS 303 (411)
Q Consensus 294 ~VdmI~qs~s 303 (411)
..+.++++.-
T Consensus 183 ~~~~~~ag~~ 192 (317)
T COG0616 183 EKEVITAGEY 192 (317)
T ss_pred CEEEEECCCC
T ss_conf 6034423242
No 312
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=25.72 E-value=45 Score=13.68 Aligned_cols=22 Identities=27% Similarity=0.484 Sum_probs=13.5
Q ss_pred EEEECCCCHHHHHHH-HHHHHHC
Q ss_conf 998068730489999-9998614
Q gi|254780873|r 38 MVVSAMSGETDRLAE-LCRQVTS 59 (411)
Q Consensus 38 vVvSA~~g~Td~L~~-l~~~~~~ 59 (411)
+++.-|.|+||.-.+ ++.+...
T Consensus 3 l~LAPMaGvTd~~fR~l~~~~g~ 25 (312)
T PRK10550 3 VLLAPMEGVLDSLVRELLTEVND 25 (312)
T ss_pred EEEECCCCCCCHHHHHHHHHHCC
T ss_conf 99756788877999999999689
No 313
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.23 E-value=45 Score=13.62 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=12.1
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0004841000145541285011
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID 296 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd 296 (411)
+++||.++++...|+..++||-
T Consensus 9 ~Dr~gLf~~i~~~l~~~~l~I~ 30 (73)
T cd04900 9 PDRPGLFARIAGALDQLGLNIL 30 (73)
T ss_pred CCCCCHHHHHHHHHHHCCCEEE
T ss_conf 8978789999999998898599
No 314
>PRK04148 hypothetical protein; Provisional
Probab=25.12 E-value=46 Score=13.61 Aligned_cols=50 Identities=22% Similarity=0.248 Sum_probs=30.1
Q ss_pred HHCCHHHHEECCCCCCCCCCEECCCCH-HHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 534614402458421234411056799-9999988403110137887643313852676112
Q gi|254780873|r 171 IYTDVCGIYTTDPRIEPKAHLMKKISF-EEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 171 i~tdV~Gi~taDPr~v~~a~~i~~lsy-~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
+-.=+|-||+-+..+..+|..|=.+-. .| |+|.-++.+.+-|.++.|+-.
T Consensus 60 l~~v~DDif~P~l~iY~~a~lIYSIRPp~E-----------lq~~il~lakkv~~dliI~PL 110 (135)
T PRK04148 60 LNAFVDDIFNPNLEIYKNAKLIYSIRPPRD-----------LQPFILELAKKLNCPLYIKPL 110 (135)
T ss_pred CCEEECCCCCCCHHHHCCCCEEEEECCCHH-----------HHHHHHHHHHHCCCCEEEECC
T ss_conf 763751588998888517887998189878-----------889999999975998999707
No 315
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=25.06 E-value=46 Score=13.60 Aligned_cols=28 Identities=21% Similarity=0.331 Sum_probs=9.6
Q ss_pred EECCCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 9667866785579999999986798299
Q gi|254780873|r 350 AIGIGMQSYAGVASAFFLCLAEKGINIK 377 (411)
Q Consensus 350 vVG~gm~~~~Giaakif~aL~~~~InI~ 377 (411)
++|.|+...--+.......|.+.+|.+.
T Consensus 63 viGTG~~g~l~v~p~~~~~l~~~gi~v~ 90 (117)
T cd05126 63 VIGTGQSGALKVPPETVEKLEKRGVEVL 90 (117)
T ss_pred EECCCCCCCCCCCHHHHHHHHHCCCCEE
T ss_conf 9858968656489999999997598189
No 316
>TIGR01003 PTS_HPr_family phosphocarrier, HPr family; InterPro: IPR005698 Phosphocarrier HPr protein, a small cytoplasmic protein, is a component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) major carbohydrate transport system in bacteria , . The phosphoryl group from phosphoenolpyruvate (PEP) is transferred to HPr, the phosphoryl carrier protein, by enzyme I. Phospho-HPr then transfers it to the permease. In some bacteria HPr is a domain in a larger protein that includes a EIII(Fru) (IIA) domain and in some cases also a EI domain. The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of sugar substrates during their translocation across the cell membrane. The mechanism involves the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via enzyme I (EI) to enzyme II (EII) of the PTS system, which in turn transfers it to a phosphocarrier protein (HPr) , . There is a conserved histidine in the N-terminus of HPr, which serves as an acceptor for the phosphoryl group of EI. In the central part of HPr there is a conserved serine which, in Gram-positive bacteria only, is phosphorylated by an ATP-dependent protein kinase; a process which probably play a regulatory role in sugar transport.; GO: 0005351 sugar:hydrogen ion symporter activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system.
Probab=25.03 E-value=37 Score=14.21 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=23.2
Q ss_pred EEEEEEE-CCCEEEEEECHHHHHHHHHHHHHHCC
Q ss_conf 2999970-78489999708899999999998709
Q gi|254780873|r 375 NIKAITT-SEIKISVLIDSAYTELAVRSLHSCYG 407 (411)
Q Consensus 375 nI~~iss-Se~~IS~VV~~~d~~~Av~~LH~~F~ 407 (411)
+|.|.+. -...|.+-++.+|.++|+++|-+.|.
T Consensus 50 ~~M~LaA~~G~~v~~~~~G~De~eA~~~l~~l~~ 83 (83)
T TIGR01003 50 GIMMLAAGQGTEVTVTAEGEDEEEALEALAKLFE 83 (83)
T ss_pred HHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHC
T ss_conf 6898435889879999818168999999999839
No 317
>PRK13946 shikimate kinase; Provisional
Probab=25.01 E-value=29 Score=14.91 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHH
Q ss_conf 0001236210033431068058603433355684244306862428999998847345
Q gi|254780873|r 111 ARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADR 168 (411)
Q Consensus 111 a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~ 168 (411)
+.+.....+.+..++.+..|+++ ||.| -|.+|. +-.+|..|+-.-
T Consensus 4 ~~~~~~~~~~~~~~l~kknIvLI-G~mG---sGKStv---------Gk~LA~~L~~~f 48 (195)
T PRK13946 4 ATVLASQEEQIRAALGKRTVVLV-GLMG---AGKSTV---------GRRLATMLGLPF 48 (195)
T ss_pred CHHHHCHHHHHHHHHCCCCEEEE-CCCC---CCHHHH---------HHHHHHHHCCCE
T ss_conf 31434559999998589958998-9999---988999---------999999979798
No 318
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type; InterPro: IPR004635 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. This group of sequences represent both long and short forms of the bacterial SppA and homologs found in the archaea and plants. Signal peptides of secretory proteins seem to serve at least two important biological functions. First, they are required for protein targeting to and translocation across membranes, such as the eubacterial plasma membrane and the endoplasmic reticular membrane of eukaryotes. Second, in addition to their role as determinants for protein targeting and translocation, certain signal peptides have a signaling function. During or shortly after pre-protein translocation, the signal peptide is removed by signal peptidases. The integral membrane protein, SppA (protease IV), of Escherichia coli was shown experimentally to degrade signal peptides. The member of this family from Bacillus subtilis has only been shown to be required for efficient processing of pre-proteins under conditions of hyper-secretion . ; GO: 0008233 peptidase activity, 0006508 proteolysis.
Probab=24.77 E-value=46 Score=13.56 Aligned_cols=80 Identities=21% Similarity=0.290 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEE--CCCCHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 858458889999999999999967998899980--6873048999999-9861489988999999831299999999999
Q gi|254780873|r 9 GGTSVANIDCIRSAALHVKREVDRGQEVAMVVS--AMSGETDRLAELC-RQVTSIDNARERDVVISTGEQVSSGLMVLAL 85 (411)
Q Consensus 9 GGtSv~~~~~i~~v~~~i~~~~~~g~~~ivVvS--A~~g~Td~L~~l~-~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l 85 (411)
|||-++|.|-++++.+ +++ ++..+|++-.| |.+| -.|+.++ .++- +.....+=|.|=.+...-+..++
T Consensus 55 GG~V~~S~Eiy~~l~~-~~k--~~kkPVv~~~g~~aaSG--GYYia~aa~~I~----A~~~t~tGSIGVIl~~~n~~~L~ 125 (224)
T TIGR00706 55 GGTVVASEEIYEKLKK-LKK--EAKKPVVASMGGVAASG--GYYIAMAADEIV----ANPGTITGSIGVILQGANVEKLL 125 (224)
T ss_pred CCCCHHHHHHHHHHHH-HHH--HCCCEEEEEECCCCHHH--HHHHHHCCCEEE----ECCCCCEECHHHHHHHHHHHHHH
T ss_conf 9975226899999986-345--30885899836832267--999981388246----34774202037552035799999
Q ss_pred HHCCCCCCCCCC
Q ss_conf 843998635673
Q gi|254780873|r 86 QSLGIQAISLQG 97 (411)
Q Consensus 86 ~~~G~~a~~l~~ 97 (411)
+..|+....+.+
T Consensus 126 ~k~GI~~~~iK~ 137 (224)
T TIGR00706 126 EKLGIEFEAIKS 137 (224)
T ss_pred HHCCCEEEEEEC
T ss_conf 864915656651
No 319
>pfam06394 Pepsin-I3 Pepsin inhibitor-3-like repeated domain. Pepsin inhibitor-3 consisting of two domains, each comprising an antiparallel beta-sheet flanked by an alpha-helix. In the enzyme-inhibitor complex, the N-terminal beta-strand of PI-3 pairs with one strand of the active site flap region of pepsin. The two domains are tandem repeats of sequence, and has therefore been termed repeated domain.
Probab=24.55 E-value=47 Score=13.54 Aligned_cols=50 Identities=12% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHEECCCCCCCCCCEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEEE
Q ss_conf 40245842123441105679999999884031101378876433138526761
Q gi|254780873|r 177 GIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVR 229 (411)
Q Consensus 177 Gi~taDPr~v~~a~~i~~lsy~Ea~eLa~~Gakvlhp~~~~~~~~~~ipi~i~ 229 (411)
|-+--+-++.-+-..+..|+-+|-.||+.|-.|+= +-+-..+..|+=+++
T Consensus 22 GC~V~~Nkly~~~~~~RdLT~~E~~EL~tf~~k~a---~y~~~l~~~i~~~~~ 71 (76)
T pfam06394 22 GCVVQGNKLYANGFYVRDLTSSEQQELKTFQKKVA---QYKEYLKNQIQQRVE 71 (76)
T ss_pred CEEEECCEEEECCEECCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_conf 35889899988889611089899999999999999---999999999999998
No 320
>pfam03686 UPF0146 Uncharacterized protein family (UPF0146). The function of this family of proteins is unknown.
Probab=24.50 E-value=47 Score=13.53 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=50.2
Q ss_pred CCC-CCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCH-------------HHHEECCCCCCCCCCEECCCCHHHHH
Q ss_conf 433-3556842443068624289999988473455653461-------------44024584212344110567999999
Q gi|254780873|r 136 FQG-LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV-------------CGIYTTDPRIEPKAHLMKKISFEEML 201 (411)
Q Consensus 136 f~g-~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV-------------~Gi~taDPr~v~~a~~i~~lsy~Ea~ 201 (411)
|++ .+..|.+.-+|=|.--..|..+... +.+ .+.||+ |-||+-++.+..+|..|=.+..-
T Consensus 7 ~ia~~~~~gkiVEVGIG~~~~vA~~L~~~-g~d--v~~tDi~~~av~~gl~~v~DDif~P~~~lY~~A~lIYSIRPp--- 80 (127)
T pfam03686 7 YIARENARGKVVEVGIGFFLDVAKRLAER-GFD--VLATDINEKAVPEGLRFVVDDITNPNISIYEGADLIYSIRPP--- 80 (127)
T ss_pred HHHHHCCCCCEEEEECCCCHHHHHHHHHC-CCC--EEEEECCCCCCCCCCCEEECCCCCCCHHHHCCCCEEEECCCC---
T ss_conf 98741878858999136888999999985-996--899977765766788878725889898895587889981898---
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 988403110137887643313852676112
Q gi|254780873|r 202 EMSSLGAKVMQVRSVELAMLYKMCLFVRSS 231 (411)
Q Consensus 202 eLa~~Gakvlhp~~~~~~~~~~ipi~i~nt 231 (411)
.=|||.-++.+.+-|.++.|+-.
T Consensus 81 -------~El~~~i~~lA~~v~a~liI~PL 103 (127)
T pfam03686 81 -------PELQSAILDVAKAVGAPLYIKPL 103 (127)
T ss_pred -------HHHHHHHHHHHHHCCCCEEEECC
T ss_conf -------78889999999981998999848
No 321
>TIGR01702 CO_DH_cata carbon-monoxide dehydrogenase, catalytic subunit; InterPro: IPR010047 This entry describes the Ni-containing carbon monoxide dehydrogenase (CODH) family (1.2.99.2 from EC). These enzymes reversibly oxidise CO to CO(2), and play key roles in the energy-yielding pathways of various autotrophic anaerobes, allowing these organisms to grow with CO as the sole carbon source . The active sites of these enzymes contain Ni-iron-sulphur (NiFeS) clusters. This family also includes the CODH subunit of bifunctional CODH/acetyl-CoA synthetase (CODH/ACS), which contains two Ni-containing active sites to catalyse the formation of acetyl-CoA from CO(2)-derived CO , . CODH is related to hybrid cluster proteins (HCP, or prismane) (IPR010048 from INTERPRO), a complex whose activity is not yet fully described; the hybrid Fe-S cluster in HCPs is similar to the NiFeS cluster in CODH .; GO: 0016151 nickel ion binding, 0018492 carbon-monoxide dehydrogenase (acceptor) activity, 0051539 4 iron 4 sulfur cluster binding, 0006091 generation of precursor metabolites and energy, 0005737 cytoplasm.
Probab=24.15 E-value=48 Score=13.49 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHH--CCCCCC--------CCCCCCCCCCCCCCCCC-CC--CCCCCCCCHHH---HHH-HCCEEEEECC
Q ss_conf 29999999999984--399863--------56733245512133552-00--01236210033---431-0680586034
Q gi|254780873|r 74 EQVSSGLMVLALQS--LGIQAI--------SLQGWQIPIMTDSLHGM-AR--ICRVDEKKIVT---HLK-KKQVVVITGF 136 (411)
Q Consensus 74 E~~s~~l~a~~l~~--~G~~a~--------~l~~~~~~i~t~~~~~~-a~--~~~~~~~~l~~---~l~-~~~v~v~~Gf 136 (411)
.-+...+++..|++ .|-|.. .+|+.++-|..++.... .. +.....+-|.. ... -..+-|+
T Consensus 216 ~~~~g~~~~~~l~DiLFGtP~p~~s~~~lgv~dP~~VNI~~~GH~P~l~~~l~~~A~~edi~~~Ak~AGaAkGi~iv--- 292 (647)
T TIGR01702 216 TGLTGQILAEELSDILFGTPQPVVSEADLGVLDPDYVNIVVNGHQPLLSEILIEAAKEEDIQDKAKAAGAAKGIKIV--- 292 (647)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCCCEEEEEECCCHHHHHHHHHHHCCCCHHHHHHHHCCCCCCEEE---
T ss_conf 99889999987536653899526873676200767633688388646889999985285657899970477874477---
Q ss_pred CCCCCCCCEEEECCCC-CCHH-HHHHHHHHCHHHHHHHC
Q ss_conf 3335568424430686-2428-99999884734556534
Q gi|254780873|r 137 QGLSHDNSVTTLGRGG-SDTS-AVAIAAAIKADRCDIYT 173 (411)
Q Consensus 137 ~g~~~~g~~ttlgRGG-SD~t-A~~ia~~l~A~~~~i~t 173 (411)
|.+..|. -.+=|.+ +|=+ .-+++..+ +.|+-|.|
T Consensus 293 -G~~CtGq-e~~~R~~H~~EvFvG~~gN~~-~~E~~iaT 328 (647)
T TIGR01702 293 -GIICTGQ-ELLMRVGHLPEVFVGLVGNWL-SQELLIAT 328 (647)
T ss_pred -EEEECCC-HHHHCCCCCCCCHHHHHHHHH-HHHHHHHC
T ss_conf -8774041-575345777621023475389-89888841
No 322
>TIGR00655 PurU formyltetrahydrofolate deformylase; InterPro: IPR004810 An Escherichia coli gene designated purU has been identified and characterised. The gene codes for a 280-amino-acid protein, PurU (P37051 from SWISSPROT, 3.5.1.10 from EC). PurU is an enzyme that catalyses the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate ,. 10-formyltetrahydrofolate + H(2)O = formate +tetrahydrofolate Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer of 32kDa subunits, is activated by methionine and inhibited by glycine. Heterotropic cooperativity is observed for activation by methionine in the presence of glycine and for inhibition by glycine in the presence of methionine. These results suggest that formyl-FH4 hydrolase is a regulatory enzyme whose main function is to balance the pools of FH4 and C1-FH4 in response to changing growth conditions. The enzyme uses methionine and glycine to sense the pools of C1-FH4 and FH4, respectively. ; GO: 0008864 formyltetrahydrofolate deformylase activity, 0006189 'de novo' IMP biosynthetic process.
Probab=24.06 E-value=48 Score=13.48 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=9.5
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0004841000145541285011
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID 296 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd 296 (411)
+|.||..++|-+.++++|.||.
T Consensus 8 pD~kGlva~is~f~~~~g~NIi 29 (294)
T TIGR00655 8 PDQKGLVAAISTFIAKHGANII 29 (294)
T ss_pred CCCCCHHHHHHHHHHHCCCCEE
T ss_conf 9788728999999997489867
No 323
>cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530. This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate.
Probab=23.94 E-value=42 Score=13.87 Aligned_cols=74 Identities=15% Similarity=0.286 Sum_probs=46.5
Q ss_pred CCCCCCCCCCEEEECCCCC------CHHHHHHHHHHCHHHHHHHCCH--HHHEECCCCCCC-C-CCEECCCCHHHH--HH
Q ss_conf 3433355684244306862------4289999988473455653461--440245842123-4-411056799999--99
Q gi|254780873|r 135 GFQGLSHDNSVTTLGRGGS------DTSAVAIAAAIKADRCDIYTDV--CGIYTTDPRIEP-K-AHLMKKISFEEM--LE 202 (411)
Q Consensus 135 Gf~g~~~~g~~ttlgRGGS------D~tA~~ia~~l~A~~~~i~tdV--~Gi~taDPr~v~-~-a~~i~~lsy~Ea--~e 202 (411)
-|.|.+..|+++...||+- .+-++.-...-+|.-..||.+. +|+.. |-++. + ...|+.++-+-+ .+
T Consensus 49 ~~~c~d~~GkIcLieRg~~~~~~~p~~dkV~~c~~aGa~aaIIynN~~~pGlqn--~~L~D~n~~~~ipsVsv~~~~g~~ 126 (139)
T cd04817 49 SYICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQN--PFLVDTNNDTTIPSVSVDRADGQA 126 (139)
T ss_pred CEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCC--CEEECCCCCEEEEEEEEEHHHHHH
T ss_conf 220578747889999314566664257899988846975999976877756436--532058872675588874655699
Q ss_pred HH-HCCCCC
Q ss_conf 88-403110
Q gi|254780873|r 203 MS-SLGAKV 210 (411)
Q Consensus 203 La-~~Gakv 210 (411)
|. ..|+.|
T Consensus 127 L~~~~g~~v 135 (139)
T cd04817 127 LLAALGQST 135 (139)
T ss_pred HHHHCCCEE
T ss_conf 997408728
No 324
>KOG2201 consensus
Probab=23.60 E-value=45 Score=13.67 Aligned_cols=15 Identities=47% Similarity=0.693 Sum_probs=12.3
Q ss_pred CCCHHHHHHHHHCCC
Q ss_conf 679999999884031
Q gi|254780873|r 194 KISFEEMLEMSSLGA 208 (411)
Q Consensus 194 ~lsy~Ea~eLa~~Ga 208 (411)
.-||+||+|||.-|-
T Consensus 219 ~~sfdE~LelA~~Gd 233 (371)
T KOG2201 219 CKSFDELLELASRGD 233 (371)
T ss_pred CCCHHHHHHHHHCCC
T ss_conf 777999999874589
No 325
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase; InterPro: IPR004558 This family represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. HemN catalyses the anaerobic transformation of coproporhyrinogen-III into protoporphyrinogen-IX during porphyrin biosynthesis. Several species, including Escherichia coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity, IPR004559 from INTERPRO. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterised protein.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin biosynthetic process, 0005737 cytoplasm.
Probab=23.58 E-value=34 Score=14.45 Aligned_cols=29 Identities=24% Similarity=0.330 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECCCCHH
Q ss_conf 9999999999999967998899980687304
Q gi|254780873|r 17 DCIRSAALHVKREVDRGQEVAMVVSAMSGET 47 (411)
Q Consensus 17 ~~i~~v~~~i~~~~~~g~~~ivVvSA~~g~T 47 (411)
+++.+-...++...+...+|.--+= ||-|
T Consensus 86 ~~l~ke~~l~~~~~d~~R~V~QLHw--GGGT 114 (462)
T TIGR00538 86 EALKKEIALVAPLLDKDREVAQLHW--GGGT 114 (462)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEC--CCCC
T ss_conf 9999999998777524894688762--7898
No 326
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase; InterPro: IPR005961 This entry represents the large, tetrameric form of phenylalanine-4-hydroxylase (PAH; 1.14.16.1 from EC), as found in metazoans. PAH irreversibly converts phenylalanine to tyrosine, and is known to be the rate-limiting step in phenylalanine catabolism in some systems. It is closely related to metazoan tyrosine 3-monooxygenase and tryptophan 5-monoxygenase, and more distantly to monomeric phenylalanine-4-hydroxylases of some Gram-negative bacteria. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity . However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered. A deficiency in PAH can lead to phenylketonuria (PKU), an autosomal recessive genetic disorder characterised by an inability to metabolise phenylalanine, resulting in elevated Phe levels in the bloodstream that can lead to mental retardation if left untreated . More information about these proteins can be found at Protein of the Month: Phenylalanine Hydroxylase .; GO: 0004505 phenylalanine 4-monooxygenase activity, 0006559 L-phenylalanine catabolic process.
Probab=23.06 E-value=50 Score=13.35 Aligned_cols=51 Identities=16% Similarity=0.110 Sum_probs=22.6
Q ss_pred EEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCCCCCCC
Q ss_conf 860343335568424430686242899999884734556534614402458421234
Q gi|254780873|r 132 VITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPK 188 (411)
Q Consensus 132 v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDPr~v~~ 188 (411)
-+|||-=+=..|.+.- =|.-|-+-=...+...++-+.--+ .||=-|-++..
T Consensus 229 ~CTGf~lRPVAGLLSS-----RDFLaGLAFRVFHsTQYIRH~S~P-~YTPEPDvCHE 279 (445)
T TIGR01268 229 DCTGFRLRPVAGLLSS-----RDFLAGLAFRVFHSTQYIRHHSKP-MYTPEPDVCHE 279 (445)
T ss_pred CCCCCEECCHHHHHHH-----HHHHHHHHEEHHHCCCCEECCCCC-CCCCCCCCCHH
T ss_conf 0788452320001023-----566300120010032312148756-88867750011
No 327
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.05 E-value=50 Score=13.35 Aligned_cols=67 Identities=18% Similarity=0.270 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCH
Q ss_conf 99999999998439986356733245512133552000123621003343106805860343335568424430686242
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDT 155 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~ 155 (411)
-+..+++.+|++.|..... .++..|+... -.+.+.+.+++..++|++|=.+..+. |+
T Consensus 19 sn~~~l~~~l~~~G~~v~~-----~~iv~Dd~~~-------i~~~l~~~~~~~DlIIttGG~s~g~~-----------D~ 75 (133)
T cd00758 19 TNGPALEALLEDLGCEVIY-----AGVVPDDADS-------IRAALIEASREADLVLTTGGTGVGRR-----------DV 75 (133)
T ss_pred HHHHHHHHHHHHCCCEEEE-----EEEECCCHHH-------HHHHHHHHHHCCCEEEECCCCCCCCC-----------CC
T ss_conf 3799999999988997989-----8898979999-------99999998614999999388667988-----------51
Q ss_pred HHHHHHHHHC
Q ss_conf 8999998847
Q gi|254780873|r 156 SAVAIAAAIK 165 (411)
Q Consensus 156 tA~~ia~~l~ 165 (411)
+...+....+
T Consensus 76 t~~~l~~~g~ 85 (133)
T cd00758 76 TPEALAELGE 85 (133)
T ss_pred HHHHHHHHCC
T ss_conf 8999998539
No 328
>PRK08554 peptidase; Reviewed
Probab=22.95 E-value=50 Score=13.34 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH-HCCEEEEEC------CCCCCCCCCEEEE
Q ss_conf 999999999984399863567332455121335520001236210033431-068058603------4333556842443
Q gi|254780873|r 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLK-KKQVVVITG------FQGLSHDNSVTTL 148 (411)
Q Consensus 76 ~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~-~~~v~v~~G------f~g~~~~g~~ttl 148 (411)
-.+.+++.+|++.|+++..++....+.+ -+.+...+ ..+. .+. -+.||+-++ |-+.-.+|. .+
T Consensus 28 ~~~~~l~~~l~~~G~~~e~~~~~~~~~~------~~~~g~g~-p~l~-~~gH~DVVP~~~~~W~~dPF~~~i~dg~--ly 97 (438)
T PRK08554 28 ECPAFIKDTLESWGIESEIIERNGYYAV------YGEIGEGR-PKLL-FMAHFDVVPVNPEEWETDPFKLTVKGDR--AY 97 (438)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEE------EEECCCCC-CEEE-EECCCCCCCCCCCCCCCCCCCEEEECCE--EE
T ss_conf 9999999999977990699953991589------99638999-6699-9787788689976463799637998999--98
Q ss_pred CCCCCCHHHHHHHHHH
Q ss_conf 0686242899999884
Q gi|254780873|r 149 GRGGSDTSAVAIAAAI 164 (411)
Q Consensus 149 gRGGSD~tA~~ia~~l 164 (411)
|||=+|.=+.+.|...
T Consensus 98 GRGa~DmKg~laa~l~ 113 (438)
T PRK08554 98 GRGSADDKGNVAAIML 113 (438)
T ss_pred CCCCEECCHHHHHHHH
T ss_conf 1576225553999999
No 329
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=22.94 E-value=29 Score=14.91 Aligned_cols=71 Identities=21% Similarity=0.254 Sum_probs=36.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHH
Q ss_conf 98635673324551213355200012362100334310680586034333556842443068624289999988473455
Q gi|254780873|r 90 IQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169 (411)
Q Consensus 90 ~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~ 169 (411)
+|+..++....--+-|+.|+..+-.--...+....+-.|+.+||.|| | .-||| -|.-+..++|+.+
T Consensus 170 ~PviavNDa~tK~~FDNrYGtGqS~~dgi~r~Tn~llaGK~vVV~GY-G--------~~GkG-----~A~~arg~GA~Vi 235 (427)
T PRK05476 170 FPAINVNDSVTKSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGY-G--------DVGKG-----SAQRLRGLGARVI 235 (427)
T ss_pred CCEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHCCEECCCEEEEECC-C--------CCCCH-----HHHHHHCCCCEEE
T ss_conf 77798655344222245533462499999987352125737999556-6--------55600-----8998741898799
Q ss_pred HHHCCHH
Q ss_conf 6534614
Q gi|254780873|r 170 DIYTDVC 176 (411)
Q Consensus 170 ~i~tdV~ 176 (411)
.|+||
T Consensus 236 --VtEvD 240 (427)
T PRK05476 236 --VTEID 240 (427)
T ss_pred --EEECC
T ss_conf --98047
No 330
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative; InterPro: IPR010962 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). PLP is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination , , . PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors . Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy . PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalyzed reactions, enzymatic and non-enzymatic . This entry contains a number of enzyme families: Serine palmitoyltransferase Glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase) 5-aminolevulinic acid synthase 8-amino-7-oxononanoate synthase All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.; GO: 0016740 transferase activity, 0030170 pyridoxal phosphate binding.
Probab=22.87 E-value=16 Score=16.66 Aligned_cols=203 Identities=21% Similarity=0.262 Sum_probs=96.9
Q ss_pred CHHHHHHHHHHCH---HHHHHHCCHHHHEECC------CCCCCCCCEECCCCH-HHHHH---HHHCCCCCHHHHHHHHHH
Q ss_conf 4289999988473---4556534614402458------421234411056799-99999---884031101378876433
Q gi|254780873|r 154 DTSAVAIAAAIKA---DRCDIYTDVCGIYTTD------PRIEPKAHLMKKISF-EEMLE---MSSLGAKVMQVRSVELAM 220 (411)
Q Consensus 154 D~tA~~ia~~l~A---~~~~i~tdV~Gi~taD------Pr~v~~a~~i~~lsy-~Ea~e---La~~Gakvlhp~~~~~~~ 220 (411)
|.-+.+--+. +- +...|.|| ||||.| |.+|.=|+.++-++| |.|-= |-.-|.-..|+.-++.
T Consensus 153 DL~~~l~e~~-~~Gqy~~~l~vTD--GVFSMDGdvApLp~iVE~Ae~Yda~~yVDDAHGsGVlGe~GrGtV~HFGL~y-- 227 (392)
T TIGR01825 153 DLERVLRENV-EEGQYKKKLIVTD--GVFSMDGDVAPLPEIVELAEKYDALVYVDDAHGSGVLGEKGRGTVKHFGLEY-- 227 (392)
T ss_pred HHHHHHHHCC-CCCCCCCEEEEEC--CEEECCCCCCCCCHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEECCCCCC--
T ss_conf 8999997160-3375443689966--5042567878873233463245957998633466444778871353037541--
Q ss_pred HCCCEEEEECCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCHHHHHHHHCCCCE
Q ss_conf 138526761123777776543545454-----210122231011123466200012775000484100014554128501
Q gi|254780873|r 221 LYKMCLFVRSSFEDHGQQEQLGTLICS-----GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINI 295 (411)
Q Consensus 221 ~~~ipi~i~ntf~~~~~~~~~GT~I~~-----~~~~~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~~a~If~~La~~~I~V 295 (411)
.+|.+.| ||+=.. +.-.-.+ ..|-+.++.++=-+-.-...|+..+.+.+.+..-.=+.
T Consensus 228 -~~v~~qv-------------GTLSKA~GvvGGY~AG~~---~lidyL~~~aRPFLFSta~~Pa~~~A~~~Av~~l~~~~ 290 (392)
T TIGR01825 228 -DKVDIQV-------------GTLSKAIGVVGGYVAGSK---ELIDYLKARARPFLFSTALPPAVVAALIEAVDVLQESP 290 (392)
T ss_pred -CCEEEEE-------------CCHHHHHCCCCCCCCCCH---HHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
T ss_conf -6467885-------------552232225664234888---99999986289860125788078999999999870793
Q ss_pred ECCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHC-CC
Q ss_conf 11234432222333101212302477668878988860596158974891699996678667855799999999867-98
Q gi|254780873|r 296 DMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEK-GI 374 (411)
Q Consensus 296 dmI~qs~s~~~~~~~Isf~i~~~d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~~Giaakif~aL~~~-~I 374 (411)
+++-. .+ +.+ .=|++.+.+++++....+.++.=| ++|+. +++..+...|.+. ||
T Consensus 291 ~l~~k-------------LW-----~Nt-~ylk~~L~~LGydl~~S~tPItPv-~~Gde-----~~A~efS~rL~~~yGv 345 (392)
T TIGR01825 291 ELMEK-------------LW-----DNT-RYLKAGLSKLGYDLGESETPITPV-LIGDE-----KVAQEFSRRLLDEYGV 345 (392)
T ss_pred CHHHH-------------HH-----HHH-HHHHHHHHHHCCCCCCCCCCCCCE-EECCC-----HHHHHHHHHHHHHCCE
T ss_conf 14777-------------67-----889-999987676164114766861245-87651-----5689999987775290
Q ss_pred EEEEEE--E---CCCEEEEEECH----HHHHHHHHHHH
Q ss_conf 299997--0---78489999708----89999999999
Q gi|254780873|r 375 NIKAIT--T---SEIKISVLIDS----AYTELAVRSLH 403 (411)
Q Consensus 375 nI~~is--s---Se~~IS~VV~~----~d~~~Av~~LH 403 (411)
-...|. | -.-+|-.+|-. +|.+.|+.+..
T Consensus 346 Fa~sivFPTVp~g~ARiR~~~tA~HTkd~L~~al~aye 383 (392)
T TIGR01825 346 FAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYE 383 (392)
T ss_pred EEEEEECCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHH
T ss_conf 89984216566988421246561302667999999999
No 331
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=22.65 E-value=28 Score=15.06 Aligned_cols=71 Identities=21% Similarity=0.213 Sum_probs=38.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHH
Q ss_conf 98635673324551213355200012362100334310680586034333556842443068624289999988473455
Q gi|254780873|r 90 IQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169 (411)
Q Consensus 90 ~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~ 169 (411)
+|+..++....--+-|+.|+..+-.--...+....+-.++.+||.|| |- -||| -|.-+..++|..+
T Consensus 164 fP~iaVNDa~tK~~FDNrYGtgqS~~dgi~r~Tn~liaGK~vVV~GY-G~--------~GkG-----~A~r~rglGA~V~ 229 (413)
T cd00401 164 FPAINVNDSVTKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGY-GD--------VGKG-----CAQSLRGQGARVI 229 (413)
T ss_pred CCEEEECCHHHHHHCCCCCCCCHHHHHHHHHHHHHEECCCEEEEECC-CC--------CCHH-----HHHHHHHCCCEEE
T ss_conf 86788636666334014433321089999987421213777999457-76--------3568-----8998865898899
Q ss_pred HHHCCHH
Q ss_conf 6534614
Q gi|254780873|r 170 DIYTDVC 176 (411)
Q Consensus 170 ~i~tdV~ 176 (411)
.|+||
T Consensus 230 --VtEvD 234 (413)
T cd00401 230 --VTEVD 234 (413)
T ss_pred --EECCC
T ss_conf --97177
No 332
>TIGR00441 gmhA phosphoheptose isomerase; InterPro: IPR004515 Phosphoheptose isomerase is involved in lipopolysaccharide biosynthesis, and more specifically in the synthesis of glyceromannoheptose 7-phosphate. It may also have a role in virulence in Haemophilus ducreyi.; GO: 0008968 phosphoheptose isomerase activity, 0009244 lipopolysaccharide core region biosynthetic process, 0005737 cytoplasm.
Probab=22.54 E-value=49 Score=13.40 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=18.8
Q ss_pred CCCCCCCCCCCCCCCCHHCCCCCCCCCCC---CCHHHHHHHHCC
Q ss_conf 22231011123466200012775000484---100014554128
Q gi|254780873|r 252 MEKKVITGIAYTKDEAQISLRRLRDHPGI---SASIFSPLAEAH 292 (411)
Q Consensus 252 ~~~~~Vk~Is~~~~i~~Iti~~~~~~~g~---~a~If~~La~~~ 292 (411)
.+.+..-+|+...|.+.+|- +.+..|| .+|=-+.|.+.|
T Consensus 67 ~eR~glPAIAL~tD~S~Lta--i~NDygyd~vF~RqVEAlG~~G 108 (186)
T TIGR00441 67 LERPGLPAIALNTDISILTA--IANDYGYDEVFSRQVEALGQEG 108 (186)
T ss_pred CCCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHCCCCC
T ss_conf 02677646777622353232--0011025678777766328898
No 333
>PRK06837 acetylornithine deacetylase; Provisional
Probab=22.21 E-value=52 Score=13.24 Aligned_cols=39 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 8999999986148998899999983129999999999984399863
Q gi|254780873|r 48 DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAI 93 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~ 93 (411)
|.+++|++++-..++..- -|.--+.++..+|++.|+...
T Consensus 20 de~v~ll~~Lv~ipS~~g-------~e~~~~~~l~~~l~~~G~~~~ 58 (427)
T PRK06837 20 DAQVAFTQDLVRFPSTRG-------AEAPCQDFLADAFRARGYEVD 58 (427)
T ss_pred HHHHHHHHHHHCCCCCCC-------CHHHHHHHHHHHHHHCCCCEE
T ss_conf 889999999968999697-------649999999999997799369
No 334
>PRK13004 peptidase; Reviewed
Probab=22.19 E-value=52 Score=13.24 Aligned_cols=95 Identities=15% Similarity=0.275 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 89999999861489988999999831299999999999843998635673324551213355200012362100334310
Q gi|254780873|r 48 DRLAELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKK 127 (411)
Q Consensus 48 d~L~~l~~~~~~~~~~~~~d~i~s~GE~~s~~l~a~~l~~~G~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~ 127 (411)
+.++++.+++-..++.. --|.-.+..++.+|.+.|++...++..-- ++ +.+.... .. .+-.
T Consensus 15 ~e~v~ll~~LV~ipS~s-------g~E~~~a~~l~~~l~~~G~~~~~~d~~~n-v~-------a~~~~g~-~~---ill~ 75 (397)
T PRK13004 15 ADMTRFLRDLIAIPSES-------GDEKRVVHRIKEEMEKVGFDKVEIDPMGN-VL-------GYIGHGK-RL---IAMD 75 (397)
T ss_pred HHHHHHHHHHHCCCCCC-------CCHHHHHHHHHHHHHHCCCCEEEECCCCE-EE-------EEECCCC-CE---EEEE
T ss_conf 99999999981899949-------89999999999999877997799889970-99-------9958999-77---9998
Q ss_pred CCEEEEE-C---------CCCCCCCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 6805860-3---------4333556842443068624289999988
Q gi|254780873|r 128 KQVVVIT-G---------FQGLSHDNSVTTLGRGGSDTSAVAIAAA 163 (411)
Q Consensus 128 ~~v~v~~-G---------f~g~~~~g~~ttlgRGGSD~tA~~ia~~ 163 (411)
+.+=+|| | |-+.-.+| ..+|||=+|.-+.+.|..
T Consensus 76 gH~DvVP~g~~~~W~~dPf~~~~~dg--~lyGRGa~DmKg~~aa~l 119 (397)
T PRK13004 76 AHIDTVGVGDIKNWDFDPFEGMETDG--RIYGRGTSDQKGGMASMV 119 (397)
T ss_pred CCCCCCCCCCCCCCCCCCCCCEEECC--EEEECCCCCCCCCHHHHH
T ss_conf 75178899986668569966589899--999468654546489999
No 335
>pfam06929 Rotavirus_VP3 Rotavirus VP3 protein. This family consists of several Rotavirus specific VP3 proteins. VP3 is known to be a viral guanylyltransferase and is thought to posses methyltransferase activity and therefore VP3 is a predicted multifunctional capping enzyme.
Probab=22.03 E-value=39 Score=14.03 Aligned_cols=68 Identities=28% Similarity=0.388 Sum_probs=34.4
Q ss_pred HHHHHCCCCCCCC-CCCCCCCCCCCCCCCCC---CC---CCCCCC---HH--HH-HHHCCE--EEEECCCCCCCCCCEEE
Q ss_conf 9998439986356-73324551213355200---01---236210---03--34-310680--58603433355684244
Q gi|254780873|r 83 LALQSLGIQAISL-QGWQIPIMTDSLHGMAR---IC---RVDEKK---IV--TH-LKKKQV--VVITGFQGLSHDNSVTT 147 (411)
Q Consensus 83 ~~l~~~G~~a~~l-~~~~~~i~t~~~~~~a~---~~---~~~~~~---l~--~~-l~~~~v--~v~~Gf~g~~~~g~~tt 147 (411)
..|++.|++|..+ ...++++++..+|.-.- +. +.+.-. +. +. +.+..+ .+.||| .+|.
T Consensus 54 eiLNksGIaal~~~~~d~l~~li~~NfTYdy~~nIvYlHdYsYY~nNEirtDq~Wlt~TnI~eyllPgw-------KltY 126 (684)
T pfam06929 54 EILNKSGIAALILIKPDHLGILISSNFTYDYQYKIVYLHDYSYYKNNEIRTDQFWLTKTNIEEYLLPGW-------KLTY 126 (684)
T ss_pred HHHCCCCCEEEEECCHHHHEEEEECCCCEEECCCEEEEEEECEEECCEEEECCEEEECCCHHHHCCCCE-------EEEE
T ss_conf 675115860578716446201442253025010779997401330560010323663167444147871-------8999
Q ss_pred ECCCCCCHHH
Q ss_conf 3068624289
Q gi|254780873|r 148 LGRGGSDTSA 157 (411)
Q Consensus 148 lgRGGSD~tA 157 (411)
.||||.++-+
T Consensus 127 vg~~g~~trg 136 (684)
T pfam06929 127 VGRGGRETRG 136 (684)
T ss_pred EECCCCCCCC
T ss_conf 8207700457
No 336
>pfam05221 AdoHcyase S-adenosyl-L-homocysteine hydrolase.
Probab=21.86 E-value=25 Score=15.43 Aligned_cols=71 Identities=20% Similarity=0.208 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCEEEEECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHH
Q ss_conf 98635673324551213355200012362100334310680586034333556842443068624289999988473455
Q gi|254780873|r 90 IQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169 (411)
Q Consensus 90 ~~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~l~~~l~~~~v~v~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~ 169 (411)
+|...++....--+-|+.|+..+-.--...+..+.+-.++.+||.|| -.-||| -|.-+..++|..+
T Consensus 172 fPviaVNDa~tK~~FDNrYGtgqS~~dgi~r~Tn~liaGK~vVV~GY---------G~cGkG-----~A~r~rglGA~V~ 237 (430)
T pfam05221 172 FPAINVNDSVTKSKFDNLYGCRESLPDGIKRATDVMIAGKVAVVCGY---------GDVGKG-----CAASLRGQGARVI 237 (430)
T ss_pred CCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHCCEECCCEEEEECC---------CCCCHH-----HHHHHHHCCCEEE
T ss_conf 41799676665134013433123099999986171342767999556---------753578-----9999842798899
Q ss_pred HHHCCHH
Q ss_conf 6534614
Q gi|254780873|r 170 DIYTDVC 176 (411)
Q Consensus 170 ~i~tdV~ 176 (411)
.|+||
T Consensus 238 --VtEvD 242 (430)
T pfam05221 238 --VTEID 242 (430)
T ss_pred --EECCC
T ss_conf --95478
No 337
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit; InterPro: IPR014098 Members of this protein family are the delta subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases..
Probab=21.79 E-value=30 Score=14.87 Aligned_cols=28 Identities=29% Similarity=0.279 Sum_probs=18.1
Q ss_pred CCHHHHEECCCCCCCCCCEECCCCHHHHH
Q ss_conf 46144024584212344110567999999
Q gi|254780873|r 173 TDVCGIYTTDPRIEPKAHLMKKISFEEML 201 (411)
Q Consensus 173 tdV~Gi~taDPr~v~~a~~i~~lsy~Ea~ 201 (411)
-||||+|| |-|++-|-.-|+.-+|+--.
T Consensus 12 ldvdGvmt-dGrivindeGiesrnfdikd 39 (169)
T TIGR02726 12 LDVDGVMT-DGRIVINDEGIESRNFDIKD 39 (169)
T ss_pred EECCCEEE-CCEEEEECCCCCCCCCCCCC
T ss_conf 83062423-67588804873212321116
No 338
>TIGR00458 aspS_arch aspartyl-tRNA synthetase; InterPro: IPR004523 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology . The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric . Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices , and are mostly dimeric or multimeric, containing at least three conserved regions , , . However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases; these synthetases are further divided into three subclasses, a, b and c, according to sequence homology. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases . Aspartyl tRNA synthetase 6.1.1.12 from EC is an alpha2 dimer that belongs to class IIb. Structural analysis combined with mutagenesis and enzymology data on the yeast enzyme point to a tRNA binding process that starts by a recognition event between the tRNA anticodon loop and the synthetase anticodon binding module . This family represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). ; GO: 0000166 nucleotide binding, 0004815 aspartate-tRNA ligase activity, 0005524 ATP binding, 0006412 translation, 0006422 aspartyl-tRNA aminoacylation, 0005737 cytoplasm.
Probab=21.64 E-value=47 Score=13.53 Aligned_cols=29 Identities=10% Similarity=0.373 Sum_probs=18.4
Q ss_pred CEECCCCHHHHHHHHH-CCCCCHHHHHHHH
Q ss_conf 1105679999999884-0311013788764
Q gi|254780873|r 190 HLMKKISFEEMLEMSS-LGAKVMQVRSVEL 218 (411)
Q Consensus 190 ~~i~~lsy~Ea~eLa~-~Gakvlhp~~~~~ 218 (411)
.+.++|+|+||.||+. -|..+-|-.-+.-
T Consensus 303 ~~~~Rl~Y~Ea~e~~~~~G~ei~~gEDLs~ 332 (466)
T TIGR00458 303 EKFERLTYDEAIEIANAKGKEIKWGEDLST 332 (466)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 755532207789999865971555466543
No 339
>pfam11111 CENP-M Centromere protein M (CENP-M). The prime candidate for specifying centromere identity is the array of nucleosomes assembles with CENP-A. CENP-A recruits a nucleosome associated complex (NAC) comprised of CENP-M along with two other proteins. Assembly of the CENP-A NAC at centromeres is partly dependant on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival.
Probab=21.30 E-value=54 Score=13.12 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=3.6
Q ss_pred CCHHHHHHHHH
Q ss_conf 55799999999
Q gi|254780873|r 359 AGVASAFFLCL 369 (411)
Q Consensus 359 ~Giaakif~aL 369 (411)
||+.+-.+..|
T Consensus 160 p~vsaLyl~sl 170 (176)
T pfam11111 160 PGVSALYLSSL 170 (176)
T ss_pred CCCHHHHHHHH
T ss_conf 87138899988
No 340
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=20.84 E-value=36 Score=14.27 Aligned_cols=13 Identities=15% Similarity=0.284 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2477668878988
Q gi|254780873|r 318 SSLEKALAVLSDN 330 (411)
Q Consensus 318 ~d~~~~~~~L~~~ 330 (411)
+|+.+....|++.
T Consensus 288 eDLaqlI~dLk~~ 300 (485)
T COG0069 288 EDLAQLIKDLKEA 300 (485)
T ss_pred HHHHHHHHHHHHC
T ss_conf 8999999999961
No 341
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.84 E-value=29 Score=14.89 Aligned_cols=15 Identities=40% Similarity=0.558 Sum_probs=8.7
Q ss_pred ECCCCCCCCCCEEEE
Q ss_conf 034333556842443
Q gi|254780873|r 134 TGFQGLSHDNSVTTL 148 (411)
Q Consensus 134 ~Gf~g~~~~g~~ttl 148 (411)
.||+|.|..|+.|||
T Consensus 53 vgflGaNGAGKSTtL 67 (325)
T COG4586 53 VGFLGANGAGKSTTL 67 (325)
T ss_pred EEEECCCCCCCHHHH
T ss_conf 988758888603339
No 342
>TIGR01229 rocF_arginase arginase; InterPro: IPR014033 L-Arginine is converted to nitric oxide and citrulline by the enzyme nitric oxide synthase and by the enzyme arginase as a part of the hepatic urea cycle. Arginase is a manganese metalloenzyme containing a metal-activated hydroxide ion, a critical nucleophile in metalloenzymes that catalyze hydrolysis or hydration reactions. A hydrogen bond formed by the metal-bound hydroxide holds the enzyme in the proper orientation for catalysis however non-metal substrate-binding sites are also implicated in the enzyme mechanism. Regeneration of metal-bound hydroxide ion from a metal-bound water molecule requires proton transfer to bulk solvent mediated by a histidine proton shuttle residue. .
Probab=20.80 E-value=55 Score=13.05 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 999999999999996799889998
Q gi|254780873|r 17 DCIRSAALHVKREVDRGQEVAMVV 40 (411)
Q Consensus 17 ~~i~~v~~~i~~~~~~g~~~ivVv 40 (411)
++.++++..+.+..++| +..+|.
T Consensus 83 ~~~e~l~~~v~~v~~~~-rfpL~L 105 (337)
T TIGR01229 83 AATEQLAEKVYKVVEEG-RFPLVL 105 (337)
T ss_pred HHHHHHHHHHHHHHHHC-CEEEEE
T ss_conf 99999999999999719-723664
No 343
>TIGR02475 CobW cobalamin biosynthesis protein CobW; InterPro: IPR012824 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase . In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase . There are at least two distinct cobalamin biosynthetic pathways in bacteria : Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway ; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis ; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) . There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobW proteins, which are generally found proximal to the trimeric cobaltochelatase subunit CobN, an essential protein for vitamin B12 (cobalamin) biosynthesis . They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids.; GO: 0009236 cobalamin biosynthetic process.
Probab=20.72 E-value=41 Score=13.92 Aligned_cols=42 Identities=17% Similarity=0.032 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCCCC-CCHHHHH
Q ss_conf 4776688789888605961589748916999966786678-5579999
Q gi|254780873|r 319 SLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSY-AGVASAF 365 (411)
Q Consensus 319 d~~~~~~~L~~~~~~~~~~~I~~~~~~a~ISvVG~gm~~~-~Giaaki 365 (411)
+.+.+...++++.+..++-+|+ +=+.|=|.-||=. .||-.|+
T Consensus 271 d~~~L~~~l~~l~~~~dvLRiK-----GF~~v~GKPMRLlvQaVG~Rv 313 (349)
T TIGR02475 271 DPDALLERLERLAEEEDVLRIK-----GFAAVPGKPMRLLVQAVGKRV 313 (349)
T ss_pred CHHHHHHHHHHHHHHCCCEEEE-----EEEECCCCCEEEEEECHHHHH
T ss_conf 9899999999998408942665-----268728976367531100255
No 344
>KOG0203 consensus
Probab=20.67 E-value=56 Score=13.03 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=25.0
Q ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEE-EEECC
Q ss_conf 91699996678667855799999999867982999-97078
Q gi|254780873|r 344 NLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKA-ITTSE 383 (411)
Q Consensus 344 ~~a~ISvVG~gm~~~~Giaakif~aL~~~~InI~~-issSe 383 (411)
-=++|+|.|+|.-+.| ||.+++|-|-| |+.|+
T Consensus 704 ~GaiVaVTGDGVNDsP--------ALKKADIGVAMGiaGSD 736 (1019)
T KOG0203 704 QGAIVAVTGDGVNDSP--------ALKKADIGVAMGIAGSD 736 (1019)
T ss_pred CCCEEEEECCCCCCCH--------HHCCCCCCEEECCCCCH
T ss_conf 6868999589867874--------44003546453234306
No 345
>PRK07522 acetylornithine deacetylase; Provisional
Probab=20.57 E-value=56 Score=13.02 Aligned_cols=38 Identities=13% Similarity=0.152 Sum_probs=21.5
Q ss_pred HHHHHHHHCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCC
Q ss_conf 999998614899889999998312-999999999998439986356
Q gi|254780873|r 51 AELCRQVTSIDNARERDVVISTGE-QVSSGLMVLALQSLGIQAISL 95 (411)
Q Consensus 51 ~~l~~~~~~~~~~~~~d~i~s~GE-~~s~~l~a~~l~~~G~~a~~l 95 (411)
++|++++-..++. |-.| .--+..++.+|++.|++...+
T Consensus 8 v~ll~~LV~i~Sv-------s~~~~~~~~~~l~~~l~~~G~~~~~~ 46 (387)
T PRK07522 8 LDILERLVAFDTV-------SRDSNLALIEWVRDYLAAHGIESELI 46 (387)
T ss_pred HHHHHHHCCCCCC-------CCCCHHHHHHHHHHHHHHCCCCEEEE
T ss_conf 9999998099895-------99845999999999999779918999
No 346
>PRK04247 hypothetical protein; Provisional
Probab=20.56 E-value=56 Score=13.02 Aligned_cols=25 Identities=8% Similarity=0.125 Sum_probs=16.9
Q ss_pred CCCCCHHHHHHHHHHHCCCEEEEEE
Q ss_conf 6785579999999986798299997
Q gi|254780873|r 356 QSYAGVASAFFLCLAEKGINIKAIT 380 (411)
Q Consensus 356 ~~~~Giaakif~aL~~~~InI~~is 380 (411)
--.|.|..++-.-|.+.|+....+.
T Consensus 210 lvAp~It~~Ar~Ll~drGle~v~ld 234 (250)
T PRK04247 210 LVAPSITERARRLLEKEGLEFVKVN 234 (250)
T ss_pred EECCCCCHHHHHHHHHCCCCEEEEC
T ss_conf 9988589879999997597289907
No 347
>TIGR01343 hacA_fam homoaconitate hydratase family protein; InterPro: IPR006251 3-isopropylmalate dehydratase (or isopropylmalate isomerase; 4.2.1.33 from EC) catalyses the stereo-specific isomerisation of 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate. This enzyme performs the second step in the biosynthesis of leucine, and is present in most prokaryotes and many fungal species. The prokaryotic enzyme is a heterodimer composed of a large (LeuC) and small (LeuD) subunit, while the fungal form is a monomeric enzyme. Both forms of isopropylmalate are related and are part of the larger aconitase family . Aconitases are mostly monomeric proteins which share four domains in common and contain a single, labile [4Fe-4S] cluster. Three structural domains (1, 2 and 3) are tightly packed around the iron-sulphur cluster, while a fourth domain (4) forms a deep active-site cleft. The prokaryotic enzyme is encoded by two adjacent genes, leuC and leuD, corresponding to aconitase domains 1-3 and 4 respectively , . LeuC does not bind an iron-sulphur cluster. It is thought that some prokaryotic isopropylamalate dehydrogenases can also function as homoaconitase 4.2.1.36 from EC, converting cis-homoaconitate to homoisocitric acid in lysine biosynthesis . Homoaconitase has been identified in higher fungi (mitochondria) and several archaea and one thermophilic species of bacteria, Thermus thermophilus . This entry represents the large subunit of 3-isopropylmalate dehydratase (LeuC), as well as homoaconitase, certain aconitases and uncharacterised proteins, and is a subgroup of those represented in IPR012095. Homoaconitase, aconitase and 3-isopropylmalate dehydratase have similar overall structures and domain organisation . All are dehydratases that bind a [4Fe-4S]-cluster. The majority of the members of this family have been designated as 3-isopropylmalate dehydratase large subunit (LeuC) in microbial genome annotation, but the only characterised member is T. thermophilus homoaconitase, an enzyme of a non-aspartate pathway of lysine biosynthesis. Information about related proteins can be found at Protein of the Month: Aconitase .; GO: 0016836 hydro-lyase activity, 0051539 4 iron 4 sulfur cluster binding, 0008652 amino acid biosynthetic process.
Probab=20.55 E-value=56 Score=13.01 Aligned_cols=92 Identities=22% Similarity=0.312 Sum_probs=50.0
Q ss_pred EEEECCCCCCCCCCEEEECCCC---CCHHHHHHHHHHCHHHHHHHCCHHHHE----ECC--CCCCC--------------
Q ss_conf 5860343335568424430686---242899999884734556534614402----458--42123--------------
Q gi|254780873|r 131 VVITGFQGLSHDNSVTTLGRGG---SDTSAVAIAAAIKADRCDIYTDVCGIY----TTD--PRIEP-------------- 187 (411)
Q Consensus 131 ~v~~Gf~g~~~~g~~ttlgRGG---SD~tA~~ia~~l~A~~~~i~tdV~Gi~----taD--Pr~v~-------------- 187 (411)
.+.||.+-...+-+|||+|==| |=.=++-+|.+.=+-+ .|=-|+-=+ +-| |-+.+
T Consensus 109 lv~PG~~vvGaDSHTCTyGA~GAFaTG~GsTD~A~a~A~Gk--~W~rVPEs~~v~~~G~L~p~V~aKDviL~~I~~iG~D 186 (432)
T TIGR01343 109 LVKPGDLVVGADSHTCTYGALGAFATGVGSTDIAYAIATGK--VWFRVPESIKVQLTGKLNPGVTAKDVILEVIGEIGVD 186 (432)
T ss_pred EECCCCEEEECCCCHHHHHHHHHHHCCCCHHHHHHHHHHCC--CEEECCCEEEEEEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 00678779934731223455765413744589999998286--1021571899998830389965036663222654478
Q ss_pred ---------CCCEECCCCHHHHHHHHHC----CCCC----HHHHHHHHHHHCCC
Q ss_conf ---------4411056799999998840----3110----13788764331385
Q gi|254780873|r 188 ---------KAHLMKKISFEEMLEMSSL----GAKV----MQVRSVELAMLYKM 224 (411)
Q Consensus 188 ---------~a~~i~~lsy~Ea~eLa~~----Gakv----lhp~~~~~~~~~~i 224 (411)
++-.+++||-+|=+-||++ |+|- -.-.|++++.+.++
T Consensus 187 GAtY~a~Ef~Ge~~~~~~~~~R~TlaNMAiEaGgKtGii~~De~T~~Y~~~~Gv 240 (432)
T TIGR01343 187 GATYKAMEFHGETVKNMDMEERLTLANMAIEAGGKTGIIEPDEKTIEYLKERGV 240 (432)
T ss_pred CCCEEEEEEECCEEEECCHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCC
T ss_conf 752068998173245266434667988999818831477367279999997178
No 348
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=20.43 E-value=35 Score=14.39 Aligned_cols=63 Identities=24% Similarity=0.267 Sum_probs=33.1
Q ss_pred EECCCCCCCCCCEEEECCCCCCHHHHHHHHHHCHHHHHHHCCHHHHEECCC-CC--CCCC-CEECCCCHHHHHHHHHC
Q ss_conf 603433355684244306862428999998847345565346144024584-21--2344-11056799999998840
Q gi|254780873|r 133 ITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP-RI--EPKA-HLMKKISFEEMLEMSSL 206 (411)
Q Consensus 133 ~~Gf~g~~~~g~~ttlgRGGSD~tA~~ia~~l~A~~~~i~tdV~Gi~taDP-r~--v~~a-~~i~~lsy~Ea~eLa~~ 206 (411)
+.||+|.|..|.|||| -.|...+.+++=.|--+=.-+-...+ |+ .|.- -+++.++..|.. .||
T Consensus 30 i~GllG~NGAGKTTtf---------RmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~tv~dql--~yl 96 (300)
T COG4152 30 IFGLLGPNGAGKTTTF---------RMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQL--KYL 96 (300)
T ss_pred EEEEECCCCCCCCCHH---------HHHHCCCCCCCCEEEECCCCHHHHHHHHCCCCHHHHCCCCCCCHHHHH--HHH
T ss_conf 7876658889732339---------998645786676689858510055565406581540667567199999--999
No 349
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.17 E-value=57 Score=12.96 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=14.7
Q ss_pred CCCCCCCCHHHHHHHHCCCCEE
Q ss_conf 0004841000145541285011
Q gi|254780873|r 275 RDHPGISASIFSPLAEAHINID 296 (411)
Q Consensus 275 ~~~~g~~a~If~~La~~~I~Vd 296 (411)
.+.||.+.++...|++.+++|-
T Consensus 9 ~drpGlL~~v~q~L~dl~L~I~ 30 (72)
T cd04895 9 ARKPGILLEAVQVLTDLDLCIT 30 (72)
T ss_pred CCCCCCHHHHHHHHHHCCEEEE
T ss_conf 9998659999999986892898
Done!