RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (411 letters)



>gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed.
          Length = 404

 Score =  614 bits (1585), Expect = e-176
 Identities = 231/410 (56%), Positives = 304/410 (74%), Gaps = 7/410 (1%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
           MA IV KFGGTSV +++ I+  A  VK EV+ G +V +VVSAM G TD L +L ++V+ +
Sbjct: 1   MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPL 60

Query: 61  DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
            + RE D+++STGEQVS  L+ +ALQSLG++A S  GWQ  I+TDS HG ARI  +D  +
Sbjct: 61  PDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSR 120

Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180
           I   L +  VVV+ GFQG+  D  +TTLGRGGSDT+AVA+AAA+KAD C+IYTDV G+YT
Sbjct: 121 IREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYT 180

Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240
           TDPRI PKA  + KIS+EEMLE++SLGAKV+  RSVE A  Y + L VRSSF D+     
Sbjct: 181 TDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNP---- 236

Query: 241 LGTLICSG-EDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299
            GTLI    E+IME+ V+TGIA+ KDEA++++  + D PGI+A IF  LAEA+IN+DMI+
Sbjct: 237 -GTLITGEEEEIMEQPVVTGIAFDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIV 295

Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYA 359
           QNVSEDG+  DITFT P   LEKAL +L + K+ IG + + ++D++ K+S +G+GM+S+ 
Sbjct: 296 QNVSEDGK-TDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP 354

Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
           GVA+  F  LAE+GINI+ I+TSEIKISVLID  Y ELAVR+LH  +GLD
Sbjct: 355 GVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALHEAFGLD 404


>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional.
          Length = 587

 Score =  425 bits (1096), Expect = e-120
 Identities = 187/418 (44%), Positives = 267/418 (63%), Gaps = 15/418 (3%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
           MA IV KFGGTSV +++ I++ A  + R  + G +V +VVSAM   TD L +L ++++S 
Sbjct: 1   MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSN 60

Query: 61  DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
              RE D+++STGEQVS  L+ +AL  LG  AISL G Q+ I+T+S HG ARI  +   +
Sbjct: 61  PPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDR 120

Query: 121 IVTHLKKKQVVVITGFQG--LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGI 178
           I  HL   +VVV+ GFQG  LS +  +TTLGRGGSDTSAVA+AAA+ AD C+IYTDV G+
Sbjct: 121 IQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGV 180

Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238
            TTDPR+ P+A LM +IS +EMLE++SLGA V+  R+VE+A  Y + L VRSS+ D    
Sbjct: 181 LTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSD---- 236

Query: 239 EQLGTLICS-------GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEA 291
              GTL+ S          +   K + G+   +D+A+++L R+ D PGI+A +F  LA  
Sbjct: 237 -APGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQ 295

Query: 292 HINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAI 351
            +N+D+IIQ++ E G   DI FT   + L+KA AV       +G   +  E N+ K+S  
Sbjct: 296 GVNVDLIIQSIHE-GNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSIS 354

Query: 352 GIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
           G GM    G+A+  F  LAE GINI+ I+TSE+K+S +ID+   + A+R++   + L+
Sbjct: 355 GAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELE 412



 Score =  142 bits (360), Expect = 2e-34
 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%)

Query: 227 FVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFS 286
            V  +FE    Q ++       ++      + G+A  +++AQ+++R + D PG++ASIF 
Sbjct: 404 AVCEAFELEDSQIEINPTASGQDEP----EVRGVALDRNQAQLAIRNVPDRPGMAASIFG 459

Query: 287 PLAEAHINIDMIIQNV-SEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNL 345
            LAEA+I++DMI+Q+         DI+FT P    E A  VL +  + +    ++    +
Sbjct: 460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVEDGPAI 519

Query: 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSC 405
            K+S +G GM    GVA+  F  LA+ GINI+ I TSEI+ S ++       A++++H  
Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVHQA 579

Query: 406 YGLD 409
           +GL 
Sbjct: 580 FGLA 583


>gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase.  The Lys-sensitive enzyme
           of Bacillus subtilis resembles the E. coli form but is
           an alpha 2/beta 2 heterotetramer, where the beta subunit
           is translated from an in-phase alternative initiator at
           Met-246. This may be a feature of a number of closely
           related forms, including a paralog from B. subtilis.
          Length = 441

 Score =  399 bits (1026), Expect = e-112
 Identities = 175/449 (38%), Positives = 253/449 (56%), Gaps = 50/449 (11%)

Query: 2   ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS-- 59
           A IV KFGGTSV N + IR  A  V +E  +G +V +VVSAM+G TD L EL  Q +   
Sbjct: 1   ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGP 60

Query: 60  --------------------------------------IDNARERDVVISTGEQVSSGLM 81
                                                  +  RE D ++S GE++S+ L+
Sbjct: 61  SKEFLEKIREKHIEILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALL 120

Query: 82  VLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDEKKIVTHLKKKQVVVITGFQGLS 140
             AL+ LG++A+SL G +  I+TDS  G AR I  +  +++   L++  + V+ GFQG +
Sbjct: 121 SAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGAT 180

Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200
                TTLGRGGSD +A  +AAA+KAD C+IYTDV GIYTTDPRI P A  + +IS+EEM
Sbjct: 181 EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEM 240

Query: 201 LEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGI 260
           LE++S GAKV+  R++E AM  K+ + V+S+F      E  GTLI +    ME+ ++ G+
Sbjct: 241 LELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP----EAPGTLIVASTKEMEEPIVKGL 296

Query: 261 AYTKDEAQISLRRLRD-HPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319
           +  +++A++++  L    PG  A +F  LAEA IN+D+I Q+ SE      I+FT     
Sbjct: 297 SLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS----ISFTVDKED 352

Query: 320 LEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI 379
            ++A  +L           ++ E  L K+S +G GM+S  GVAS  F  LA+ GINI+ I
Sbjct: 353 ADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412

Query: 380 TTSEIKISVLIDSAYTELAVRSLHSCYGL 408
           ++SEI IS ++D    E AVR LH+    
Sbjct: 413 SSSEINISFVVDEKDAEKAVRLLHNALFE 441


>gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class. 
           The Lys-sensitive enzyme of Bacillus subtilis resembles
           the E. coli form but is an alpha 2/beta 2
           heterotetramer, where the beta subunit is translated
           from an in-phase alternative initiator at Met-246. The
           protein slr0657 from Synechocystis PCC6803 is extended
           by a duplication of the C-terminal region corresponding
           to the beta chain. Incorporation of a second copy of the
           C-terminal domain may be quite common in this subgroup
           of aspartokinases.
          Length = 401

 Score =  357 bits (919), Expect = 2e-99
 Identities = 174/411 (42%), Positives = 243/411 (59%), Gaps = 17/411 (4%)

Query: 4   IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ-VTSIDN 62
           IV KFGGTSV + + I++AA  V +E   G +V +VVSAMSG TD L E+  + +     
Sbjct: 3   IVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAIT 62

Query: 63  ARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVD-EKKI 121
            RERD ++S GE++SS L   AL+ LG++AI L G +  I+TD   G A+I  +  E+++
Sbjct: 63  PRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERL 122

Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181
           +  L++  +VV+ GFQG +     TTLGRGGSD +A  +AAA+KADR DIYTDV G+YTT
Sbjct: 123 LPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTT 182

Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241
           DPR+   A  + KIS+EE LE+++ GAKV+  R+VE AM   + + VRSSF+        
Sbjct: 183 DPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE----- 237

Query: 242 GTLICSGEDIME-KKVITGIAYTKDEAQISLRRLR--DHPGISASIFSPLAEAHINIDMI 298
           GTLI +    ME   ++ GIA  K+  ++++  L      G  A IF  LAE +IN+D+I
Sbjct: 238 GTLITNS---MENPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294

Query: 299 IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358
            Q  SE      I+ T   +  ++A+  L D     G D ++ E+ L K+S +G GM   
Sbjct: 295 SQTPSE----TSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGA 350

Query: 359 AGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
            GVAS  F  L EK INI  I +SE  IS L+D    E AVR LH  +   
Sbjct: 351 PGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHEVFEES 401


>gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed.
          Length = 403

 Score =  312 bits (802), Expect = 9e-86
 Identities = 156/419 (37%), Positives = 230/419 (54%), Gaps = 26/419 (6%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAM--SGE---TDRLAELCR 55
           M  IV KFGGTSV+  +  + A   +K+ +  G +V +VVSAM   G+   TD L  L  
Sbjct: 1   MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVG 60

Query: 56  QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115
           +  S  + RE+D+++S GE +SS +    L   GI+A++L G Q  I+TD     A+I  
Sbjct: 61  EEFSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIE 120

Query: 116 VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175
           V+  +I+  L++  VVV+ GFQG++ +  +TTLGRGGSDT+A A+  A+KA+  DIYTDV
Sbjct: 121 VNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDV 180

Query: 176 CGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDH 235
            GI T DPRI   A L+  +S+ E+ +M+  GAKV+  R+VE+AM   + L +RS++ D 
Sbjct: 181 DGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS 240

Query: 236 GQQEQLGTLICS-----GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAE 290
                 GTLI S     G   +E+++ITGIA+  +  QI ++   +   +   +F  LAE
Sbjct: 241 -----PGTLITSLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAE 295

Query: 291 AHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISA 350
           A I++D I  N+          FT      EKA  +L    EN+G       +N  K+S 
Sbjct: 296 AGISVDFI--NIFPTEV----VFTVSDEDSEKAKEIL----ENLGLKP-SVRENCAKVSI 344

Query: 351 IGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409
           +G GM    GV +     L+E+GI I     S   I VL+     E AV +LH  + L 
Sbjct: 345 VGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALHDAFELS 403


>gnl|CDD|180515 PRK06291, PRK06291, aspartate kinase; Provisional.
          Length = 465

 Score =  279 bits (716), Expect = 8e-76
 Identities = 171/473 (36%), Positives = 247/473 (52%), Gaps = 76/473 (16%)

Query: 3   RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---AELC----- 54
           R+VMKFGGTSV + + IR  A  VKR    G EV +VVSAM+G TD L   AE       
Sbjct: 2   RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRD 61

Query: 55  -------------RQVTSIDNA------------------------------------RE 65
                        R   +I+ A                                    R 
Sbjct: 62  IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121

Query: 66  RDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDE---KKI 121
           RD ++S GE++S+ ++  AL+ LGI++++L G +  I+TDS  G AR + +  E   +++
Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181

Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181
              LK+  + V+TGF G + +  +TTLGRGGSD SA  I AA+ AD   I+TDV G+ TT
Sbjct: 182 EPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTT 241

Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241
           DPRI P+A ++ KIS+ E +E+S  GAKV+  R++E AM   + + V+++F      E  
Sbjct: 242 DPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFN----PEFP 297

Query: 242 GTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMII 299
           GTLI S  +   K+V+  +   K+ A I++    +   PG +A IFS LAE  +N+ MI 
Sbjct: 298 GTLITSDSE-SSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356

Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVL-SDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358
           Q  SE     +I+     + LEKAL  L  +  E +  DV   +D  V ++ +G GM   
Sbjct: 357 QGSSE----SNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCV-VAVVGAGMAGT 411

Query: 359 AGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLD 409
            GVA   F  L E GINIK I+  +SE+ IS ++D    E AV+ LH  + L 
Sbjct: 412 PGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFILG 464


>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated.
          Length = 392

 Score =  264 bits (676), Expect = 4e-71
 Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 30/406 (7%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
           M  IV KFGGTSV +I+ I++ A H+ +  + G +V +VVSAM+GET+RL  L +QV S+
Sbjct: 1   MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSV 60

Query: 61  DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
             ARE DV++S GEQVS  L+ + L  LG  A SL G Q  I+TD+ H  A I  +D   
Sbjct: 61  PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTST 120

Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180
           I   L++ Q+V++ GFQG + +  +TTLGRGGSDT+AVA+A A+ AD C I+TDV G+YT
Sbjct: 121 ITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYT 180

Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240
            DPR+   A  +  I F  M  M+  GAKV+ + SV+ A  + + L V SSFE  G+   
Sbjct: 181 CDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GE--- 236

Query: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300
            GTLI   +     + + GIA  +D A I          + +     L +    + + + 
Sbjct: 237 -GTLI---KGEAGTQAVCGIALQRDLALIE---------VESESLPSLTKQCQMLGIEVW 283

Query: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360
           NV E+     I       +  K   V  D         I++ +++  ++ +G+       
Sbjct: 284 NVIEEADRAQI--VIKQDACAKLKLVFDDK--------IRNSESVSLLTLVGLEANGMVE 333

Query: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCY 406
            A      LA+ GI+++  +T      +++D A  + A   LH  Y
Sbjct: 334 HACNL---LAQNGIDVRQCSTEPQSSMLVLDPANVDRAANILHKTY 376


>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine
           dehydrogenase I; Provisional.
          Length = 819

 Score =  217 bits (555), Expect = 4e-57
 Identities = 126/466 (27%), Positives = 217/466 (46%), Gaps = 79/466 (16%)

Query: 5   VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVS---------------AMSGETD- 48
           V+KFGGTSVAN +     A  ++    + Q VA+V+S               A  G+   
Sbjct: 3   VLKFGGTSVANAERFLRVADIIESNARQEQ-VAVVLSAPAKVTNHLVAMIEKAAKGDDAY 61

Query: 49  -----------------------------------RLAELCRQVTSIDNARE-----RDV 68
                                                A+L   +  I    E        
Sbjct: 62  PEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAA 121

Query: 69  VISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH--LK 126
           +IS GE++S  +M   L++ G     +   ++ ++ D  +  + +   +  + +    + 
Sbjct: 122 IISRGERLSIAIMAAVLEARGHDVTVIDPREL-LLADGHYLESTVDIAESTRRIAASFIP 180

Query: 127 KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186
              V+++ GF   +    + TLGR GSD SA  +AA + AD C+I+TDV G+YT DPR+ 
Sbjct: 181 ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVV 240

Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246
           P A L+K +S++E +E+S  GAKV+  R++     +++   ++++F         GTLI 
Sbjct: 241 PDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP----GTLI- 295

Query: 247 SGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSE 304
             E   +   + GI+   + A  ++    ++   G+++ +F+ L+ A I++ +I Q+ SE
Sbjct: 296 GAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE 355

Query: 305 DGQYVDITFTTPSSSLEKALAVLSDN-----KENIGYDVIQHEDNLVKISAIGIGMQSYA 359
                 I+F  P S   KA   L +      KE +  + ++ E+NL  IS +G GM+++ 
Sbjct: 356 Y----SISFCVPQSDAAKAKRALEEEFALELKEGL-LEPLEVEENLAIISVVGDGMRTHP 410

Query: 360 GVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLH 403
           G+A+ FF  L    INI AI   +SE  ISV+ID+     A+R+ H
Sbjct: 411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACH 456


>gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated.
          Length = 448

 Score =  206 bits (528), Expect = 6e-54
 Identities = 133/465 (28%), Positives = 202/465 (43%), Gaps = 85/465 (18%)

Query: 4   IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGET---------------- 47
           +V KFGGTSVA+ D +  +A  V    +      +V+SA +G T                
Sbjct: 2   VVAKFGGTSVADFDAMNRSADIVLSNPNTR---LVVLSASAGVTNLLVALAEGAEPGDER 58

Query: 48  --------------------------------DRLAELCRQVTSIDNARERDVVISTGEQ 75
                                           + +  L    +   +    D ++S GE 
Sbjct: 59  LALLDEIRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGEL 118

Query: 76  VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR----ICRVDEKKIVTHLKKKQVV 131
           +S+ L V  L+  G+QA      ++ + TD   G A           ++ +  L  + VV
Sbjct: 119 MSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLLAEGVV 177

Query: 132 VITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHL 191
           V  GF G       TTLGRGGSD SA  +A A+ A R +I+TDV GIYTTDPRI P A  
Sbjct: 178 VTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKR 237

Query: 192 MKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDI 251
           + +ISFEE  EM++ GAKV+   ++  A+   + +FV SS +     E  GT IC   D 
Sbjct: 238 IDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKD----PEAGGTWIC--NDT 291

Query: 252 MEKKVITGIAYTKDEAQISLRRLR---DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY 308
               +   IA  +++  ++L  L       G  A +F  LA   I++D+I    SE    
Sbjct: 292 ENPPLFRAIALRRNQTLLTLHSLNMLHAR-GFLAEVFGILARHKISVDLI--TTSE---- 344

Query: 309 VDITFT---TPSSSLEKAL---AVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362
           V ++ T   T S+S    L   A+L++  +    +V   E+ L  ++ IG  +    GVA
Sbjct: 345 VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEV---EEGLALVALIGNNLSKACGVA 401

Query: 363 SAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSC 405
              F  L  +  NI+ I    S   +  L+  +  E  V++LH  
Sbjct: 402 KRVFGVL--EPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQN 444


>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase.
          Length = 521

 Score =  126 bits (319), Expect = 8e-30
 Identities = 126/482 (26%), Positives = 203/482 (42%), Gaps = 107/482 (22%)

Query: 4   IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL------AELCR-- 55
           +VMKFGG+SVA+ + +R  A  +    D      +V+SAM   T+ L      A  C   
Sbjct: 54  VVMKFGGSSVASAERMREVADLILSFPDERP--VVVLSAMGKTTNNLLLAGEKAVSCGVT 111

Query: 56  QVTSIDN-------------------------------------------ARERDVVIST 72
            V+ I+                                             R RD ++S 
Sbjct: 112 NVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171

Query: 73  GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKK---- 128
           GE++S+ +    L  +G++A     + I  +T      A I       +   L       
Sbjct: 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDD 231

Query: 129 -QVVVITGFQGLSHDN-SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186
             V V+TGF G      ++TTLGRGGSD +A  I  A+      ++ DV G+ T DPRI 
Sbjct: 232 PAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIY 291

Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246
           P A  +  ++F+E  E++  GA+V+  +S+  A    + + V++S+         GTLI 
Sbjct: 292 PNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAP----GTLIT 347

Query: 247 SGEDIMEKKVITGIAYTKDEAQ---ISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303
              D M K V+T I   ++      +S R L  + G  A +FS   +  I++D++    S
Sbjct: 348 KTRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQY-GFLAKVFSTFEDLGISVDVVA--TS 403

Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHE-DNLVK--------------- 347
           E    V I+ T   S L                ++IQ E D+LV+               
Sbjct: 404 E----VSISLTLDPSKLW-------------SRELIQQELDHLVEELEKIAVVNLLQGRS 446

Query: 348 -ISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHS 404
            IS IG   +S   +   F + L   G+N++ I+   S++ IS++++    E  VR+LHS
Sbjct: 447 IISLIGNVQRSSLILEKVFRV-LRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505

Query: 405 CY 406
            +
Sbjct: 506 AF 507


>gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated.
          Length = 341

 Score =  124 bits (314), Expect = 3e-29
 Identities = 96/325 (29%), Positives = 149/325 (45%), Gaps = 67/325 (20%)

Query: 3   RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETD---RLAE------- 52
            IV+KFGG+SV        A   VK   +   EV +VVSA+ G TD   +LAE       
Sbjct: 5   MIVVKFGGSSVR--YDFEEALELVKYLSE-ENEVVVVVSALKGVTDKLLKLAETFDKEAL 61

Query: 53  --------------------LCRQVTSIDNARE-------RDVVISTGEQVSSGLMVLAL 85
                               L   +  + N+R        RD ++S GE++S+ L   AL
Sbjct: 62  EEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEAL 121

Query: 86  QSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH-------LKKKQVVVITGFQG 138
           ++ GI+   +  W+I +      G A I   D KK   +       L++ +V V+ GF G
Sbjct: 122 ENEGIKGKVVDPWEI-LEAKGSFGNAFI---DIKKSKRNVKILYELLERGRVPVVPGFIG 177

Query: 139 LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE 198
            + +    TLGRGGSD SAVA+   + A    I +DV GIYT DP++ P A L+  +S++
Sbjct: 178 -NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYD 236

Query: 199 EMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC---SGEDIMEKK 255
           E L  + LG K +  +++E        +F R+         ++GTL+    SG  I+  K
Sbjct: 237 EALIAAKLGMKALHWKAIEPVKGKIPIIFGRTR------DWRMGTLVSNESSGMPILVHK 290

Query: 256 VITGIAYTKDEAQISLRRLRDHPGI 280
           V       ++ A+I +  + +  G 
Sbjct: 291 VG------EEHAEILVVGVEEEIGY 309


>gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed.
          Length = 454

 Score =  118 bits (299), Expect = 2e-27
 Identities = 113/457 (24%), Positives = 194/457 (42%), Gaps = 72/457 (15%)

Query: 4   IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSA--------------------- 42
            V+KFGG+S+A+ +  +     VK + +R     +VVSA                     
Sbjct: 2   KVVKFGGSSLASAEQFKKVLNIVKSDPER---KIVVVSAPGKRFKEDTKVTDLLILYAEA 58

Query: 43  -MSGE---------TDRLAELCR--------------------QVTSIDNARERDVVIST 72
            ++GE           R AE+ +                     + S +  R  D   + 
Sbjct: 59  VLAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKAR 118

Query: 73  GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVV 132
           GE +++ L+   L   GI A  +   +  I+     G A++       +     + + +V
Sbjct: 119 GEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLV 178

Query: 133 ITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLM 192
           I GF G++ D  + T  RGGSD +   +A  +KAD  + +TDV GIY  +PRI      +
Sbjct: 179 IPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSI 238

Query: 193 KKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252
           K+I++ EM E+S  G  V    ++  A  Y+  + +     ++ +    GTLI    D  
Sbjct: 239 KEITYREMRELSYAGFSVFHDEALIPA--YRGGIPINIKNTNNPEDP--GTLIVPDRDNK 294

Query: 253 EKKVITGIAYTKDEAQISLRR--LRDHPGISASIFSPLAEAHINIDMI---IQNVSEDGQ 307
            K  ITGIA  K    I + +  +    G    +   L +  I+ + +   I ++S    
Sbjct: 295 NKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLS---- 350

Query: 308 YVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFL 367
              I       + +K   +L++ K+ +  D ++ E +L  I  +G GM+   GVA+    
Sbjct: 351 ---IIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITK 407

Query: 368 CLAEKGINIKAI--TTSEIKISVLIDSAYTELAVRSL 402
            LAE  INI+ I   +SEI I   + +   E AV+++
Sbjct: 408 ALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAI 444



 Score = 48.6 bits (117), Expect = 3e-06
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKEN 333
           +R   G++A I   LAEA+INI MI Q  SE    + I F   +   EKA+  +      
Sbjct: 395 MRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNEDAEKAVKAI------ 444

Query: 334 IGYDVIQHEDNL 345
             Y+    E  +
Sbjct: 445 --YNAFFKEVLV 454


>gnl|CDD|135659 PRK05925, PRK05925, aspartate kinase; Provisional.
          Length = 440

 Score =  114 bits (287), Expect = 5e-26
 Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 59/298 (19%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR----- 55
           MA +V KFGGTS+   + IR     + +E        +VVSA++G TD L E CR     
Sbjct: 1   MAPLVYKFGGTSLGTAESIRRVCDIICKEKPS----FVVVSAVAGVTDLLEEFCRLSKGK 56

Query: 56  ---------------------------------------QVTSIDNARERDVVISTGEQV 76
                                                  +++S D AR    +++ GE +
Sbjct: 57  REALTEKIREKHEEIAKELGIEFSLSPWWERLEHFEDVEEISSEDQAR----ILAIGEDI 112

Query: 77  SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKKKQVVVIT 134
           S+ L+     +  +    L+  Q+ I+TD  +  A   +  +        L++  + ++ 
Sbjct: 113 SASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQ 171

Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194
           GF G +     T LGRGGSD SA  IA   KA    IYTDV GIYT DP+I   A L+ +
Sbjct: 172 GFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPE 231

Query: 195 ISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252
           +SFEEM  ++S GAKV+    ++  +   + +FV S+F+      + GT I + +  +
Sbjct: 232 LSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFD----VTKGGTWIYASDKEV 285


>gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate
           decarboxylase protein; Provisional.
          Length = 861

 Score =  108 bits (272), Expect = 2e-24
 Identities = 103/464 (22%), Positives = 192/464 (41%), Gaps = 81/464 (17%)

Query: 4   IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ------- 56
           +V+KFGGTSV+      + A  V++ +  G  V +VVSA+SG ++ L  +          
Sbjct: 10  VVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSA 69

Query: 57  --VTSID--------------------------------------NARERDVVISTGEQV 76
             V +I                                       + R +  V+  GE +
Sbjct: 70  SRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELL 129

Query: 77  SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--------ICRVDEKKIVTHLKKK 128
           S+ L    L++ G+    L   +        +              + D         + 
Sbjct: 130 STTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQP 189

Query: 129 QVVVIT-GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEP 187
             V+IT GF   + D     LGRGGSDTSA   AA + A R +I+TDV G+++ +P+  P
Sbjct: 190 AQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVP 249

Query: 188 KAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC- 246
            A L+ ++ ++E  E+++ GAKV+  RS++      + + +  +     + +  GT I  
Sbjct: 250 DARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDT----ERPDLSGTSIDG 305

Query: 247 SGEDIMEKKVI---TGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303
             E +   K I    GI     E     +++    G  A +F+   +  +++D+I  + S
Sbjct: 306 DAEPVPGVKAISRKNGIVLVSMETIGMWQQV----GFLADVFTLFKKHGLSVDLI--SSS 359

Query: 304 EDGQYVDITFT-TPSSSL--EKALAVLSDNKENIG-YDVIQHEDNLVKISAIGIGMQSYA 359
           E     ++T +  PS +L     LA LS +   I    +I        +S +G GM+S  
Sbjct: 360 E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVKII---VPCAAVSLVGRGMRSLL 412

Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403
                 +     + +++ +  ++++ ++ +ID +  +  +  LH
Sbjct: 413 HKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456


>gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine
           dehydrogenase II; Provisional.
          Length = 810

 Score =  105 bits (264), Expect = 3e-23
 Identities = 103/465 (22%), Positives = 176/465 (37%), Gaps = 85/465 (18%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---------- 50
           M R + KFGG+S+A+  C R  A  +  E  +  ++ +VVSA    T++L          
Sbjct: 10  MGRQLHKFGGSSLADAKCYRRVA-GILAEYSQPDDL-VVVSAAGKTTNQLISWLKLSQTD 67

Query: 51  ---------------AELCRQVTSIDNARE------------------------RDVVIS 71
                           +L   +   + AR                            V+ 
Sbjct: 68  RLSAHQVQQTLRRYQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVG 127

Query: 72  TGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK--------IVT 123
            GE  S+ LM   L   G+ A  L               A   +VDE          +  
Sbjct: 128 HGEVWSARLMAALLNQQGLPAAWLDARSFLRAER-----AAQPQVDEGLSYPLLQQLLAQ 182

Query: 124 HLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP 183
           H  K+  +V+TGF   +       LGR GSD SA  I A    +R  I++DV G+Y+ DP
Sbjct: 183 HPGKR--LVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADP 240

Query: 184 RIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGT 243
           R    A L+  +  +E  E++ L A V+  R+++      + L +R S++      ++  
Sbjct: 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIER 300

Query: 244 LICSGEDIMEKKVITGIAYTKDEAQISLRRLRDH--PGISASIFSPLAEAHINIDMIIQN 301
           ++ SG      +++T      D   I L+    H        +   L  A +    +   
Sbjct: 301 VLASGT---GARIVT---SLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLR--PLAVG 352

Query: 302 VSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGV 361
           V  D Q + + +T  S   + AL +L D         ++  + L  ++ +G G+      
Sbjct: 353 VHPDRQLLQLAYT--SEVADSALKLLDDAALPGE---LKLREGLALVALVGAGVTRNPLH 407

Query: 362 ASAFFLCLAEKGINIKAITTSEIKISV--LIDSAYTELAVRSLHS 404
              F+  L  K   ++ I  SE  +S+  ++    TE  ++ LH 
Sbjct: 408 CHRFYQQL--KDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450


>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit,
           putative.  This family consists of proteins restricted
           to and found as paralogous pairs (typically close
           together) in species of Pyrococcus, a hyperthermophilic
           archaeal genus. Members are always found close to other
           genes of threonine biosynthesis and appear to represent
           the Pyrococcal form of aspartate kinase. Alignment to
           aspartokinase III from E. coli shows that 300 N-terminal
           and 20 C-terminal amino acids are homologous, but the
           form in Pyrococcus lacks ~ 100 amino acids in between.
          Length = 327

 Score = 94.5 bits (235), Expect = 4e-20
 Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 57/272 (20%)

Query: 4   IVMKFGGTSVANIDCIRSA---ALHVKREVDRGQEVAMVVSAMSGETDRLAELC-----R 55
           IV+KFGG+SV      R A   AL + + +   + V +VVSA+ G TD L          
Sbjct: 2   IVVKFGGSSV------RYAFEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKS 55

Query: 56  QVTSIDNARE-------------------------------RDVVISTGEQVSSGLMVLA 84
               I+   E                               RD ++S GE++S+      
Sbjct: 56  AALEIEEIYEEFAKELGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSA-----V 110

Query: 85  LQSLGIQAISLQGWQIPIMTDSLHGMARI----CRVDEKKIVTHLKKKQVVVITGFQGLS 140
           + + GI    +  W I        G A I     + + K +   L+  ++ VI GF G +
Sbjct: 111 IFAEGINGKVVDPWDIFFAKGDF-GNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYG-N 168

Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200
            +    TLGRGGSD SAVA+   + +    I +DV GI+T DP++ P A L+  +S+EE+
Sbjct: 169 LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEI 228

Query: 201 LEMSSLGAKVMQVRSVELAMLYKM-CLFVRSS 231
              + LG K +Q ++ +LA  YK+  LF R+ 
Sbjct: 229 KIAAKLGMKALQWKAADLAKEYKIPVLFGRTR 260


>gnl|CDD|131130 TIGR02075, pyrH_bact, uridylate kinase.  This protein, also called
           UMP kinase, converts UMP to UDP by adding a phosphate
           from ATP. It is the first step in pyrimidine
           biosynthesis. GTP is an allosteric activator. In a large
           fraction of all bacterial genomes, the gene tends to be
           located immediately downstream of elongation factor Ts
           and upstream of ribosome recycling factor. A related
           protein family, believed to be equivalent in function
           and found in the archaea and in spirochetes, is
           described by a separate model, TIGR02076.
          Length = 233

 Score = 59.6 bits (145), Expect = 1e-09
 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 53/264 (20%)

Query: 3   RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
           R+++K  G ++A       + D +   A  +K  V  G EV +V+            + R
Sbjct: 3   RVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG--------GNIFR 54

Query: 56  QVTSIDNARERDVVISTGEQ------VSSGLMVL-ALQSLGIQAISLQGWQIPIMTDSLH 108
            V    +A+E  +   T +       V +GL +  AL+ LG++   L    +P + +S  
Sbjct: 55  GV----SAKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESY- 109

Query: 109 GMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADR 168
                     +K + HL+K +VV+ +G  G       TT      DT+A   A  I AD 
Sbjct: 110 --------IRRKAIKHLEKGKVVIFSGGTGNPF---FTT------DTAAALRAIEINADV 152

Query: 169 CDIYTD-VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLF 227
               T+ V G+YT DP+    A   + I++ E L+      KVM + +  LA    + + 
Sbjct: 153 ILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIV 209

Query: 228 V-----RSSFEDHGQQEQLGTLIC 246
           V       + +     + +GTL+ 
Sbjct: 210 VFNIDEPGALKKVILGKGIGTLVS 233


>gnl|CDD|178986 PRK00358, pyrH, uridylate kinase; Provisional.
          Length = 231

 Score = 55.1 bits (134), Expect = 3e-08
 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 62/268 (23%)

Query: 3   RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
           R+++K  G ++A       + + +   A  +K  V+ G EVA+VV    G   R      
Sbjct: 2   RVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG--GNIFRGYIGAA 59

Query: 56  QVTSIDNARERDVVISTGEQVSSGLMV-----LALQSLGIQAISLQGWQIPIMTDSLHGM 110
               +D A        T + +  G++      LALQ       +L+   +     S   M
Sbjct: 60  A--GMDRA--------TADYM--GMLATVMNALALQD------ALERAGVDTRVQSAIPM 101

Query: 111 ARICR-VDEKKIVTHLKKKQVVVITG-----FQGLSHDNSVTTLGRGGSDTSAVAIAAAI 164
            ++      ++ + HL+K +VV+        F         TT      DT+A   A  I
Sbjct: 102 PQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFF--------TT------DTAAALRAEEI 147

Query: 165 KADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKM 224
            AD     T+V G+Y  DP+ +P A    +++++E+LE      KVM   ++ LA   K+
Sbjct: 148 GADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKI 204

Query: 225 CLFVRSSFEDHG------QQEQLGTLIC 246
            + V  +    G      + E +GTL+ 
Sbjct: 205 PIIV-FNMNKPGNLKRVVKGEHIGTLVS 231


>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional.
          Length = 231

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQ 212
           +DT+A   A  +KAD     T V GIY  DP+  P A  +  ++F E ++M   G KVM 
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190

Query: 213 VRSVELAMLYKMCLFVRSSFEDHG-----QQEQLGTLI 245
             +  +   Y + + V + FE        + E +GTL+
Sbjct: 191 TEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228


>gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional.
          Length = 368

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)

Query: 142 DNSVTT--LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196
           +++VTT  L  G +D  +  +AA   AD   I +D+ G+Y  +PR  P A L+K+++
Sbjct: 136 NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVT 192


>gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative.  This family
           consists of the archaeal and spirochete proteins most
           closely related to bacterial uridylate kinases
           (TIGR02075), an enzyme involved in pyrimidine
           biosynthesis. Members are likely, but not known, to be
           functionally equivalent to their bacterial counterparts.
           However, substantial sequence differences suggest that
           regulatory mechanisms may be different; the bacterial
           form is allosterically regulated by GTP.
          Length = 221

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM---SSLGA 208
           D  A  +A   KAD     T+V G+Y  DP+ +P A    K++ EE++E+   SS+ A
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKA 175


>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase.  Bacterial ProB proteins hit
           the full length of this model, but the ProB-like domain
           of delta 1-pyrroline-5-carboxylate synthetase does not
           hit the C-terminal 100 residues of this model. The noise
           cutoff is set low enough to hit delta
           1-pyrroline-5-carboxylate synthetase and other partial
           matches to this family.
          Length = 363

 Score = 37.7 bits (88), Expect = 0.006
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 144 SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196
           +   +  G +DT +  +A  + AD   + TDV G+Y  DPR  P A L+  + 
Sbjct: 136 ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVE 188


>gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.
          Length = 372

 Score = 35.8 bits (84), Expect = 0.022
 Identities = 17/42 (40%), Positives = 26/42 (61%)

Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195
           DT +  +A  ++AD   + TDV G+YT DPR  P A L+ ++
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEV 195


>gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
           Provisional.
          Length = 268

 Score = 35.3 bits (82), Expect = 0.030
 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 52/235 (22%)

Query: 4   IVMKFGGTSVANID--CIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELC----RQV 57
           IV+K GG+   + +   I  A+L        G+ V ++V   S E + L E      R V
Sbjct: 2   IVVKIGGSVGIDPEDALIDVASL-----WADGERV-VLVHGGSDEVNELLERLGIEPRFV 55

Query: 58  TSIDNARER-------DVVISTGEQVSSGLMVLALQSLGIQAISLQGW-----------Q 99
           TS      R       +V I     ++  L V  LQSLG+ A+ L G             
Sbjct: 56  TSPSGVTSRYTDRETLEVFIMAMALINKQL-VERLQSLGVNAVGLSGLDGGLLEGKRKKA 114

Query: 100 IPIMTDSLHGMARICR---------VDEKKIVTHLKKKQVVVITGFQGLSHDNS-VTTLG 149
           + ++ +   G  +I R         V+   +   LK   + V+     LS +   +   G
Sbjct: 115 VRVVEE---GKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPP-ALSEEGEPLNVDG 170

Query: 150 RGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS 204
               D +A AIA A+KA+   + +DV G+   DP  E    L+++I+ EE  E+S
Sbjct: 171 ----DRAAAAIAGALKAEALVLLSDVPGLL-RDPPDEGS--LIERITPEEAEELS 218


>gnl|CDD|180538 PRK06349, PRK06349, homoserine dehydrogenase; Provisional.
          Length = 426

 Score = 35.1 bits (82), Expect = 0.040
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQY--VDITFTTPSSSLEKALAVLSD 329
            + D PG+ A I +  AE  I+I+ I+Q  +       V +T  T  ++L  ALA +  
Sbjct: 354 LVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEA 412


>gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional.
          Length = 266

 Score = 33.3 bits (77), Expect = 0.10
 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 151 GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS 205
           G +D  +  +A  +KAD   I +D+ G+Y  +PRI P A L  +++   EE+L ++ 
Sbjct: 154 GDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAG 210


>gnl|CDD|128719 smart00442, FGF, Acidic and basic fibroblast growth factor family. 
           Mitogens that stimulate growth or differentiation of
           cells of mesodermal or neuroectodermal origin. The
           family play essential roles in patterning and
           differentiation during vertebrate embryogenesis, and
           have neurotrophic activities.
          Length = 126

 Score = 32.6 bits (75), Expect = 0.17
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 324 LAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKG 373
           L +L D   + G         +++I A+ +G+ +  GVAS  +LC+ + G
Sbjct: 15  LQILPDGTVD-GTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCG 63


>gnl|CDD|179175 PRK00942, PRK00942, acetylglutamate kinase; Provisional.
          Length = 283

 Score = 32.0 bits (74), Expect = 0.28
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM 203
           DT+A AIAAA+ A++  + TDV G+         K  L+ +++  E  E+
Sbjct: 184 DTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEEL 227


>gnl|CDD|178923 PRK00194, PRK00194, hypothetical protein; Validated.
          Length = 90

 Score = 30.9 bits (71), Expect = 0.65
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%)

Query: 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY------VDITFTTPS-SSLEKALAVLS 328
           D  GI A + + LAE ++NI  I Q + +   Y      VDI+ +    + L++ L  L 
Sbjct: 12  DKVGIIAGVSTVLAELNVNILDISQTIMDG--YFTMIMLVDISESKKDFAELKEELEELG 69

Query: 329 DNKENIGYDV-IQHED 343
              + +G  + IQHE+
Sbjct: 70  ---KELGVKIRIQHEE 82


>gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional.
          Length = 247

 Score = 30.2 bits (68), Expect = 0.90
 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 18/133 (13%)

Query: 120 KIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD-VCGI 178
           + V HL    +V+  G  G      VTT      D  +V  A  + +D   +    V G+
Sbjct: 117 RAVHHLDNGYIVIFGGGNGQPF---VTT------DYPSVQRAIEMNSDAILVAKQGVDGV 167

Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238
           +T+DP+    A + +K+++ +++       +VM   ++ LA  Y +   V  +F++ G  
Sbjct: 168 FTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHV-FNFDEPGVM 223

Query: 239 EQLGTLICSGEDI 251
            +    IC GE +
Sbjct: 224 RR----ICLGEHV 232


>gnl|CDD|181679 PRK09181, PRK09181, aspartate kinase; Validated.
          Length = 475

 Score = 29.9 bits (68), Expect = 1.4
 Identities = 80/366 (21%), Positives = 152/366 (41%), Gaps = 71/366 (19%)

Query: 66  RDVVISTGEQVSSGLMVLALQSLGIQA--ISLQGWQIPIMTDSLHGMARICRVDEKKIVT 123
           R+++ S GE  S+    L LQ+ G+ A  + L GW      D          +DE +I  
Sbjct: 139 REMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWD-----DDDPL-----TLDE-RIKK 187

Query: 124 HLKK----KQVVVITGF----QGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175
             K     K++ ++TG+    +GL       T  RG S+ +   IA    AD   I+ + 
Sbjct: 188 AFKDIDVTKELPIVTGYAKCKEGLMR-----TFDRGYSEMTFSRIAVLTGADEAIIHKE- 241

Query: 176 CGIY---TTDPRI--EPKAHLMKKISFEEMLEMSSLG--------AKVMQVRSVELAMLY 222
              Y   + DP++  E K   + + +++   ++++LG        AK ++   + L    
Sbjct: 242 ---YHLSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLR--- 295

Query: 223 KMCLFVRSSFE-DHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISL--RRLRDHPG 279
                ++++FE +H      GTLI + + + E+  +  IA +     + +  + +    G
Sbjct: 296 -----IKNTFEPEHP-----GTLI-TKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDG 344

Query: 280 ISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVI 339
               I   L    ++      N +    Y+         +L++ +A L   K     +V 
Sbjct: 345 YDLEILEILTRHKVSYISKATNANTITHYLW----GSLKTLKRVIAELE--KRYPNAEVT 398

Query: 340 QHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI--TTSEIKISVLIDSAYTEL 397
                +  +SAIG  +     +A A    LAE GIN+ A+  +  ++ +  ++D    E 
Sbjct: 399 VR--KVAIVSAIGSNIAVPGVLAKA-VQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK 455

Query: 398 AVRSLH 403
           A+ +LH
Sbjct: 456 AICALH 461



 Score = 28.7 bits (65), Expect = 2.7
 Identities = 18/52 (34%), Positives = 24/52 (46%)

Query: 1  MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAE 52
          M   V K GGTS++  D +    +   R+ +       VVSA  G TD L E
Sbjct: 2  MMHTVEKIGGTSMSAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLE 53


>gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase.
          Length = 309

 Score = 29.3 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)

Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTT--DPRIEPKAHLMKKISFEEMLEM 203
           +DT+A  IAAA+ A++  + TDV G+     DP       L+K++  + + ++
Sbjct: 207 ADTAAGEIAAALGAEKLILLTDVAGVLEDKDDP-----GSLVKELDIKGVRKL 254


>gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional.
          Length = 249

 Score = 28.8 bits (64), Expect = 2.5
 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 41/223 (18%)

Query: 1   MARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSA---MSGETDRL 50
           + RI++K  G S++       N++  +     +K   + G E+A+VV     + G     
Sbjct: 15  LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANF 74

Query: 51  AELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMT-DSLHG 109
               R+ T+            +   +++ +  LAL+ + I     +G    + +   + G
Sbjct: 75  GNKIRRATA-----------DSMGMIATMINALALRDMLIS----EGVDAEVFSAKGVDG 119

Query: 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169
           + ++    E      L K +V++  G  G   +  VTT      DT+A   A  I AD  
Sbjct: 120 LLKVASAHE--FNQELAKGRVLIFAGGTG---NPFVTT------DTTASLRAVEIGADAL 168

Query: 170 DIYTDVCGIYTTDPRIEPKAHLMKKISFEEM----LEMSSLGA 208
              T V G+Y  DP     A    K++F E+    L +  LGA
Sbjct: 169 LKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGA 211


>gnl|CDD|184346 PRK13820, PRK13820, argininosuccinate synthase; Provisional.
          Length = 394

 Score = 28.7 bits (65), Expect = 2.8
 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 20/111 (18%)

Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIG---------IG 354
           ++ + V+I F       E+ + V  + ++  G ++I+  + +     +G         +G
Sbjct: 210 DEPEIVEIEF-------EEGVPVAINGEKMDGVELIRKLNEIAGKHGVGRTDMMEDRVLG 262

Query: 355 MQS---YAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSL 402
           ++S   Y   A A  L  A K +    +T  E+K   ++DS + ELA   L
Sbjct: 263 LKSRENYEHPA-ATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGL 312


>gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase.  This model describes
           N-acetylglutamate kinases (ArgB) of many prokaryotes and
           the N-acetylglutamate kinase domains of multifunctional
           proteins from yeasts. This enzyme is the second step in
           the "acetylated" ornithine biosynthesis pathway. A
           related group of enzymes representing the first step of
           the pathway contain a homologous domain and are excluded
           from this model.
          Length = 231

 Score = 28.4 bits (64), Expect = 3.2
 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%)

Query: 81  MVLALQSLGIQAISLQGWQIPIMT------DSLHGMARICRVDEKKIVTHLKKKQVVVIT 134
           +V  L   GI AI L G    + T      + L  +  I +V++  +   LK   + VI+
Sbjct: 82  LVALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVIS 141

Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194
               L+ +     +    +DT+A A+AAA+ A++  + TDV GI   D        L+ +
Sbjct: 142 SL-ALTAEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGD-----GQSLISE 192

Query: 195 ISFEE 199
           I  EE
Sbjct: 193 IPLEE 197


>gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed.
          Length = 307

 Score = 27.9 bits (63), Expect = 5.0
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS----SLGAK 209
           D +A  +A  + AD   I TDV  +Y  D   +P    + + + +E+ E+     S+G K
Sbjct: 206 DLAAALLAEQLDADLLLILTDVDAVY-LDWG-KPTQRAIAQATPDELRELGFAAGSMGPK 263

Query: 210 V 210
           V
Sbjct: 264 V 264


>gnl|CDD|183162 PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional.
          Length = 281

 Score = 27.7 bits (62), Expect = 5.3
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 47  TDRLAE-LCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISL 95
           TD L      +  S D    R ++ S G  V++ ++VLAL +L +  + L
Sbjct: 216 TDELDAIFFGRGVSFD----RPIIASCGSGVTAAVVVLALATLDVPNVKL 261


>gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase.
          Length = 718

 Score = 27.8 bits (62), Expect = 5.4
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQV 213
           D+ A  +A  +KAD   + +DV G+YT  P  +P + L+     E+  +  + G K    
Sbjct: 178 DSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVG 236

Query: 214 R 214
           R
Sbjct: 237 R 237


>gnl|CDD|185667 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional.
          Length = 264

 Score = 27.7 bits (61), Expect = 5.8
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 141 HDNSVTTLGR---GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195
           ++N  T L     G +D  +  +A   KAD   I +D+ G YT +PR    A +   +
Sbjct: 134 NENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVV 191


>gnl|CDD|180460 PRK06196, PRK06196, oxidoreductase; Provisional.
          Length = 315

 Score = 27.3 bits (61), Expect = 8.1
 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 277 HPGISASIFSPLAEAHINI-DMIIQN-VSEDGQYVDITFTTPS 317
           HPG    I +PL + H+   + +    V E G  +D  F TP+
Sbjct: 210 HPG---GILTPL-QRHLPREEQVALGWVDEHGNPIDPGFKTPA 248


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.319    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 6,376,371
Number of extensions: 408751
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 926
Number of HSP's successfully gapped: 74
Length of query: 411
Length of database: 5,994,473
Length adjustment: 96
Effective length of query: 315
Effective length of database: 3,920,105
Effective search space: 1234833075
Effective search space used: 1234833075
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.3 bits)