RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] (411 letters) >gnl|CDD|180641 PRK06635, PRK06635, aspartate kinase; Reviewed. Length = 404 Score = 614 bits (1585), Expect = e-176 Identities = 231/410 (56%), Positives = 304/410 (74%), Gaps = 7/410 (1%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60 MA IV KFGGTSV +++ I+ A VK EV+ G +V +VVSAM G TD L +L ++V+ + Sbjct: 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPL 60 Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120 + RE D+++STGEQVS L+ +ALQSLG++A S GWQ I+TDS HG ARI +D + Sbjct: 61 PDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSR 120 Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180 I L + VVV+ GFQG+ D +TTLGRGGSDT+AVA+AAA+KAD C+IYTDV G+YT Sbjct: 121 IREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYT 180 Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 TDPRI PKA + KIS+EEMLE++SLGAKV+ RSVE A Y + L VRSSF D+ Sbjct: 181 TDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDNP---- 236 Query: 241 LGTLICSG-EDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMII 299 GTLI E+IME+ V+TGIA+ KDEA++++ + D PGI+A IF LAEA+IN+DMI+ Sbjct: 237 -GTLITGEEEEIMEQPVVTGIAFDKDEAKVTVVGVPDKPGIAAQIFGALAEANINVDMIV 295 Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYA 359 QNVSEDG+ DITFT P LEKAL +L + K+ IG + + ++D++ K+S +G+GM+S+ Sbjct: 296 QNVSEDGK-TDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHP 354 Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 GVA+ F LAE+GINI+ I+TSEIKISVLID Y ELAVR+LH +GLD Sbjct: 355 GVAAKMFEALAEEGINIQMISTSEIKISVLIDEKYLELAVRALHEAFGLD 404 >gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional. Length = 587 Score = 425 bits (1096), Expect = e-120 Identities = 187/418 (44%), Positives = 267/418 (63%), Gaps = 15/418 (3%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60 MA IV KFGGTSV +++ I++ A + R + G +V +VVSAM TD L +L ++++S Sbjct: 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSN 60 Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120 RE D+++STGEQVS L+ +AL LG AISL G Q+ I+T+S HG ARI + + Sbjct: 61 PPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDR 120 Query: 121 IVTHLKKKQVVVITGFQG--LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGI 178 I HL +VVV+ GFQG LS + +TTLGRGGSDTSAVA+AAA+ AD C+IYTDV G+ Sbjct: 121 IQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGV 180 Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238 TTDPR+ P+A LM +IS +EMLE++SLGA V+ R+VE+A Y + L VRSS+ D Sbjct: 181 LTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSD---- 236 Query: 239 EQLGTLICS-------GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEA 291 GTL+ S + K + G+ +D+A+++L R+ D PGI+A +F LA Sbjct: 237 -APGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQ 295 Query: 292 HINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAI 351 +N+D+IIQ++ E G DI FT + L+KA AV +G + E N+ K+S Sbjct: 296 GVNVDLIIQSIHE-GNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSIS 354 Query: 352 GIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 G GM G+A+ F LAE GINI+ I+TSE+K+S +ID+ + A+R++ + L+ Sbjct: 355 GAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKALRAVCEAFELE 412 Score = 142 bits (360), Expect = 2e-34 Identities = 59/184 (32%), Positives = 100/184 (54%), Gaps = 5/184 (2%) Query: 227 FVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFS 286 V +FE Q ++ ++ + G+A +++AQ+++R + D PG++ASIF Sbjct: 404 AVCEAFELEDSQIEINPTASGQDEP----EVRGVALDRNQAQLAIRNVPDRPGMAASIFG 459 Query: 287 PLAEAHINIDMIIQNV-SEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNL 345 LAEA+I++DMI+Q+ DI+FT P E A VL + + + ++ + Sbjct: 460 ALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGAEVEDGPAI 519 Query: 346 VKISAIGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSC 405 K+S +G GM GVA+ F LA+ GINI+ I TSEI+ S ++ A++++H Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMIATSEIRTSCVVAEDDGVKALQAVHQA 579 Query: 406 YGLD 409 +GL Sbjct: 580 FGLA 583 >gnl|CDD|161982 TIGR00657, asp_kinases, aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. Length = 441 Score = 399 bits (1026), Expect = e-112 Identities = 175/449 (38%), Positives = 253/449 (56%), Gaps = 50/449 (11%) Query: 2 ARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTS-- 59 A IV KFGGTSV N + IR A V +E +G +V +VVSAM+G TD L EL Q + Sbjct: 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGP 60 Query: 60 --------------------------------------IDNARERDVVISTGEQVSSGLM 81 + RE D ++S GE++S+ L+ Sbjct: 61 SKEFLEKIREKHIEILERLIPQAIAEELKRLLDAELVLEEKPREMDRILSFGERLSAALL 120 Query: 82 VLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDEKKIVTHLKKKQVVVITGFQGLS 140 AL+ LG++A+SL G + I+TDS G AR I + +++ L++ + V+ GFQG + Sbjct: 121 SAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGAT 180 Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200 TTLGRGGSD +A +AAA+KAD C+IYTDV GIYTTDPRI P A + +IS+EEM Sbjct: 181 EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEM 240 Query: 201 LEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIMEKKVITGI 260 LE++S GAKV+ R++E AM K+ + V+S+F E GTLI + ME+ ++ G+ Sbjct: 241 LELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNP----EAPGTLIVASTKEMEEPIVKGL 296 Query: 261 AYTKDEAQISLRRLRD-HPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSS 319 + +++A++++ L PG A +F LAEA IN+D+I Q+ SE I+FT Sbjct: 297 SLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETS----ISFTVDKED 352 Query: 320 LEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI 379 ++A +L ++ E L K+S +G GM+S GVAS F LA+ GINI+ I Sbjct: 353 ADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEALAQNGINIEMI 412 Query: 380 TTSEIKISVLIDSAYTELAVRSLHSCYGL 408 ++SEI IS ++D E AVR LH+ Sbjct: 413 SSSEINISFVVDEKDAEKAVRLLHNALFE 441 >gnl|CDD|161981 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. Length = 401 Score = 357 bits (919), Expect = 2e-99 Identities = 174/411 (42%), Positives = 243/411 (59%), Gaps = 17/411 (4%) Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ-VTSIDN 62 IV KFGGTSV + + I++AA V +E G +V +VVSAMSG TD L E+ + + Sbjct: 3 IVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAIT 62 Query: 63 ARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVD-EKKI 121 RERD ++S GE++SS L AL+ LG++AI L G + I+TD G A+I + E+++ Sbjct: 63 PRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERL 122 Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181 + L++ +VV+ GFQG + TTLGRGGSD +A +AAA+KADR DIYTDV G+YTT Sbjct: 123 LPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTT 182 Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241 DPR+ A + KIS+EE LE+++ GAKV+ R+VE AM + + VRSSF+ Sbjct: 183 DPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPEE----- 237 Query: 242 GTLICSGEDIME-KKVITGIAYTKDEAQISLRRLR--DHPGISASIFSPLAEAHINIDMI 298 GTLI + ME ++ GIA K+ ++++ L G A IF LAE +IN+D+I Sbjct: 238 GTLITNS---MENPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLI 294 Query: 299 IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358 Q SE I+ T + ++A+ L D G D ++ E+ L K+S +G GM Sbjct: 295 SQTPSE----TSISLTVDETDADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGA 350 Query: 359 AGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 GVAS F L EK INI I +SE IS L+D E AVR LH + Sbjct: 351 PGVASEIFSALEEKNINILMIGSSETNISFLVDEKDAEKAVRKLHEVFEES 401 >gnl|CDD|181293 PRK08210, PRK08210, aspartate kinase I; Reviewed. Length = 403 Score = 312 bits (802), Expect = 9e-86 Identities = 156/419 (37%), Positives = 230/419 (54%), Gaps = 26/419 (6%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAM--SGE---TDRLAELCR 55 M IV KFGGTSV+ + + A +K+ + G +V +VVSAM G+ TD L L Sbjct: 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVG 60 Query: 56 QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 + S + RE+D+++S GE +SS + L GI+A++L G Q I+TD A+I Sbjct: 61 EEFSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIE 120 Query: 116 VDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175 V+ +I+ L++ VVV+ GFQG++ + +TTLGRGGSDT+A A+ A+KA+ DIYTDV Sbjct: 121 VNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDV 180 Query: 176 CGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDH 235 GI T DPRI A L+ +S+ E+ +M+ GAKV+ R+VE+AM + L +RS++ D Sbjct: 181 DGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS 240 Query: 236 GQQEQLGTLICS-----GEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAE 290 GTLI S G +E+++ITGIA+ + QI ++ + + +F LAE Sbjct: 241 -----PGTLITSLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKENAYDLQQEVFKALAE 295 Query: 291 AHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISA 350 A I++D I N+ FT EKA +L EN+G +N K+S Sbjct: 296 AGISVDFI--NIFPTEV----VFTVSDEDSEKAKEIL----ENLGLKP-SVRENCAKVSI 344 Query: 351 IGIGMQSYAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLD 409 +G GM GV + L+E+GI I S I VL+ E AV +LH + L Sbjct: 345 VGAGMAGVPGVMAKIVTALSEEGIEILQSADSHTTIWVLVKEEDMEKAVNALHDAFELS 403 >gnl|CDD|180515 PRK06291, PRK06291, aspartate kinase; Provisional. Length = 465 Score = 279 bits (716), Expect = 8e-76 Identities = 171/473 (36%), Positives = 247/473 (52%), Gaps = 76/473 (16%) Query: 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---AELC----- 54 R+VMKFGGTSV + + IR A VKR G EV +VVSAM+G TD L AE Sbjct: 2 RLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVRD 61 Query: 55 -------------RQVTSIDNA------------------------------------RE 65 R +I+ A R Sbjct: 62 IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121 Query: 66 RDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR-ICRVDE---KKI 121 RD ++S GE++S+ ++ AL+ LGI++++L G + I+TDS G AR + + E +++ Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181 Query: 122 VTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTT 181 LK+ + V+TGF G + + +TTLGRGGSD SA I AA+ AD I+TDV G+ TT Sbjct: 182 EPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTT 241 Query: 182 DPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQL 241 DPRI P+A ++ KIS+ E +E+S GAKV+ R++E AM + + V+++F E Sbjct: 242 DPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFN----PEFP 297 Query: 242 GTLICSGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMII 299 GTLI S + K+V+ + K+ A I++ + PG +A IFS LAE +N+ MI Sbjct: 298 GTLITSDSE-SSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMIS 356 Query: 300 QNVSEDGQYVDITFTTPSSSLEKALAVL-SDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358 Q SE +I+ + LEKAL L + E + DV +D V ++ +G GM Sbjct: 357 QGSSE----SNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVCV-VAVVGAGMAGT 411 Query: 359 AGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSCYGLD 409 GVA F L E GINIK I+ +SE+ IS ++D E AV+ LH + L Sbjct: 412 PGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFILG 464 >gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated. Length = 392 Score = 264 bits (676), Expect = 4e-71 Identities = 144/406 (35%), Positives = 216/406 (53%), Gaps = 30/406 (7%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60 M IV KFGGTSV +I+ I++ A H+ + + G +V +VVSAM+GET+RL L +QV S+ Sbjct: 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSV 60 Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120 ARE DV++S GEQVS L+ + L LG A SL G Q I+TD+ H A I +D Sbjct: 61 PTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTST 120 Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180 I L++ Q+V++ GFQG + + +TTLGRGGSDT+AVA+A A+ AD C I+TDV G+YT Sbjct: 121 ITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYT 180 Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 DPR+ A + I F M M+ GAKV+ + SV+ A + + L V SSFE G+ Sbjct: 181 CDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GE--- 236 Query: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300 GTLI + + + GIA +D A I + + L + + + + Sbjct: 237 -GTLI---KGEAGTQAVCGIALQRDLALIE---------VESESLPSLTKQCQMLGIEVW 283 Query: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 NV E+ I + K V D I++ +++ ++ +G+ Sbjct: 284 NVIEEADRAQI--VIKQDACAKLKLVFDDK--------IRNSESVSLLTLVGLEANGMVE 333 Query: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCY 406 A LA+ GI+++ +T +++D A + A LH Y Sbjct: 334 HACNL---LAQNGIDVRQCSTEPQSSMLVLDPANVDRAANILHKTY 376 >gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional. Length = 819 Score = 217 bits (555), Expect = 4e-57 Identities = 126/466 (27%), Positives = 217/466 (46%), Gaps = 79/466 (16%) Query: 5 VMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVS---------------AMSGETD- 48 V+KFGGTSVAN + A ++ + Q VA+V+S A G+ Sbjct: 3 VLKFGGTSVANAERFLRVADIIESNARQEQ-VAVVLSAPAKVTNHLVAMIEKAAKGDDAY 61 Query: 49 -----------------------------------RLAELCRQVTSIDNARE-----RDV 68 A+L + I E Sbjct: 62 PEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAA 121 Query: 69 VISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH--LK 126 +IS GE++S +M L++ G + ++ ++ D + + + + + + + Sbjct: 122 IISRGERLSIAIMAAVLEARGHDVTVIDPREL-LLADGHYLESTVDIAESTRRIAASFIP 180 Query: 127 KKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 V+++ GF + + TLGR GSD SA +AA + AD C+I+TDV G+YT DPR+ Sbjct: 181 ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVV 240 Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 P A L+K +S++E +E+S GAKV+ R++ +++ ++++F GTLI Sbjct: 241 PDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP----GTLI- 295 Query: 247 SGEDIMEKKVITGIAYTKDEAQISLR--RLRDHPGISASIFSPLAEAHINIDMIIQNVSE 304 E + + GI+ + A ++ ++ G+++ +F+ L+ A I++ +I Q+ SE Sbjct: 296 GAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSE 355 Query: 305 DGQYVDITFTTPSSSLEKALAVLSDN-----KENIGYDVIQHEDNLVKISAIGIGMQSYA 359 I+F P S KA L + KE + + ++ E+NL IS +G GM+++ Sbjct: 356 Y----SISFCVPQSDAAKAKRALEEEFALELKEGL-LEPLEVEENLAIISVVGDGMRTHP 410 Query: 360 GVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLH 403 G+A+ FF L INI AI +SE ISV+ID+ A+R+ H Sbjct: 411 GIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACH 456 >gnl|CDD|181643 PRK09084, PRK09084, aspartate kinase III; Validated. Length = 448 Score = 206 bits (528), Expect = 6e-54 Identities = 133/465 (28%), Positives = 202/465 (43%), Gaps = 85/465 (18%) Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGET---------------- 47 +V KFGGTSVA+ D + +A V + +V+SA +G T Sbjct: 2 VVAKFGGTSVADFDAMNRSADIVLSNPNTR---LVVLSASAGVTNLLVALAEGAEPGDER 58 Query: 48 --------------------------------DRLAELCRQVTSIDNARERDVVISTGEQ 75 + + L + + D ++S GE Sbjct: 59 LALLDEIRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASLATSPALTDELVSHGEL 118 Query: 76 VSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR----ICRVDEKKIVTHLKKKQVV 131 +S+ L V L+ G+QA ++ + TD G A ++ + L + VV Sbjct: 119 MSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLLAEGVV 177 Query: 132 VITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHL 191 V GF G TTLGRGGSD SA +A A+ A R +I+TDV GIYTTDPRI P A Sbjct: 178 VTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKR 237 Query: 192 MKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDI 251 + +ISFEE EM++ GAKV+ ++ A+ + +FV SS + E GT IC D Sbjct: 238 IDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKD----PEAGGTWIC--NDT 291 Query: 252 MEKKVITGIAYTKDEAQISLRRLR---DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY 308 + IA +++ ++L L G A +F LA I++D+I SE Sbjct: 292 ENPPLFRAIALRRNQTLLTLHSLNMLHAR-GFLAEVFGILARHKISVDLI--TTSE---- 344 Query: 309 VDITFT---TPSSSLEKAL---AVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVA 362 V ++ T T S+S L A+L++ + +V E+ L ++ IG + GVA Sbjct: 345 VSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEV---EEGLALVALIGNNLSKACGVA 401 Query: 363 SAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHSC 405 F L + NI+ I S + L+ + E V++LH Sbjct: 402 KRVFGVL--EPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQN 444 >gnl|CDD|178166 PLN02551, PLN02551, aspartokinase. Length = 521 Score = 126 bits (319), Expect = 8e-30 Identities = 126/482 (26%), Positives = 203/482 (42%), Gaps = 107/482 (22%) Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL------AELCR-- 55 +VMKFGG+SVA+ + +R A + D +V+SAM T+ L A C Sbjct: 54 VVMKFGGSSVASAERMREVADLILSFPDERP--VVVLSAMGKTTNNLLLAGEKAVSCGVT 111 Query: 56 QVTSIDN-------------------------------------------ARERDVVIST 72 V+ I+ R RD ++S Sbjct: 112 NVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171 Query: 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKK---- 128 GE++S+ + L +G++A + I +T A I + L Sbjct: 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDD 231 Query: 129 -QVVVITGFQGLSHDN-SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIE 186 V V+TGF G ++TTLGRGGSD +A I A+ ++ DV G+ T DPRI Sbjct: 232 PAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIY 291 Query: 187 PKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC 246 P A + ++F+E E++ GA+V+ +S+ A + + V++S+ GTLI Sbjct: 292 PNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAP----GTLIT 347 Query: 247 SGEDIMEKKVITGIAYTKDEAQ---ISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303 D M K V+T I ++ +S R L + G A +FS + I++D++ S Sbjct: 348 KTRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQY-GFLAKVFSTFEDLGISVDVVA--TS 403 Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHE-DNLVK--------------- 347 E V I+ T S L ++IQ E D+LV+ Sbjct: 404 E----VSISLTLDPSKLW-------------SRELIQQELDHLVEELEKIAVVNLLQGRS 446 Query: 348 -ISAIGIGMQSYAGVASAFFLCLAEKGINIKAIT--TSEIKISVLIDSAYTELAVRSLHS 404 IS IG +S + F + L G+N++ I+ S++ IS++++ E VR+LHS Sbjct: 447 IISLIGNVQRSSLILEKVFRV-LRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHS 505 Query: 405 CY 406 + Sbjct: 506 AF 507 >gnl|CDD|169408 PRK08373, PRK08373, aspartate kinase; Validated. Length = 341 Score = 124 bits (314), Expect = 3e-29 Identities = 96/325 (29%), Positives = 149/325 (45%), Gaps = 67/325 (20%) Query: 3 RIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETD---RLAE------- 52 IV+KFGG+SV A VK + EV +VVSA+ G TD +LAE Sbjct: 5 MIVVKFGGSSVR--YDFEEALELVKYLSE-ENEVVVVVSALKGVTDKLLKLAETFDKEAL 61 Query: 53 --------------------LCRQVTSIDNARE-------RDVVISTGEQVSSGLMVLAL 85 L + + N+R RD ++S GE++S+ L AL Sbjct: 62 EEIEEIHEEFAKRLGIDLEILSPYLKKLFNSRPDLPSEALRDYILSFGERLSAVLFAEAL 121 Query: 86 QSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTH-------LKKKQVVVITGFQG 138 ++ GI+ + W+I + G A I D KK + L++ +V V+ GF G Sbjct: 122 ENEGIKGKVVDPWEI-LEAKGSFGNAFI---DIKKSKRNVKILYELLERGRVPVVPGFIG 177 Query: 139 LSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFE 198 + + TLGRGGSD SAVA+ + A I +DV GIYT DP++ P A L+ +S++ Sbjct: 178 -NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYD 236 Query: 199 EMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC---SGEDIMEKK 255 E L + LG K + +++E +F R+ ++GTL+ SG I+ K Sbjct: 237 EALIAAKLGMKALHWKAIEPVKGKIPIIFGRTR------DWRMGTLVSNESSGMPILVHK 290 Query: 256 VITGIAYTKDEAQISLRRLRDHPGI 280 V ++ A+I + + + G Sbjct: 291 VG------EEHAEILVVGVEEEIGY 309 >gnl|CDD|181617 PRK09034, PRK09034, aspartate kinase; Reviewed. Length = 454 Score = 118 bits (299), Expect = 2e-27 Identities = 113/457 (24%), Positives = 194/457 (42%), Gaps = 72/457 (15%) Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSA--------------------- 42 V+KFGG+S+A+ + + VK + +R +VVSA Sbjct: 2 KVVKFGGSSLASAEQFKKVLNIVKSDPER---KIVVVSAPGKRFKEDTKVTDLLILYAEA 58 Query: 43 -MSGE---------TDRLAELCR--------------------QVTSIDNARERDVVIST 72 ++GE R AE+ + + S + R D + Sbjct: 59 VLAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANLASRNPDRLLDAFKAR 118 Query: 73 GEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKKIVTHLKKKQVVV 132 GE +++ L+ L GI A + + I+ G A++ + + + +V Sbjct: 119 GEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLV 178 Query: 133 ITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLM 192 I GF G++ D + T RGGSD + +A +KAD + +TDV GIY +PRI + Sbjct: 179 IPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSI 238 Query: 193 KKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252 K+I++ EM E+S G V ++ A Y+ + + ++ + GTLI D Sbjct: 239 KEITYREMRELSYAGFSVFHDEALIPA--YRGGIPINIKNTNNPEDP--GTLIVPDRDNK 294 Query: 253 EKKVITGIAYTKDEAQISLRR--LRDHPGISASIFSPLAEAHINIDMI---IQNVSEDGQ 307 K ITGIA K I + + + G + L + I+ + + I ++S Sbjct: 295 NKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLS---- 350 Query: 308 YVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFL 367 I + +K +L++ K+ + D ++ E +L I +G GM+ GVA+ Sbjct: 351 ---IIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITK 407 Query: 368 CLAEKGINIKAI--TTSEIKISVLIDSAYTELAVRSL 402 LAE INI+ I +SEI I + + E AV+++ Sbjct: 408 ALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAI 444 Score = 48.6 bits (117), Expect = 3e-06 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 12/72 (16%) Query: 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKEN 333 +R G++A I LAEA+INI MI Q SE + I F + EKA+ + Sbjct: 395 MRQTVGVAAKITKALAEANINIQMINQGSSE----ISIMFGVKNEDAEKAVKAI------ 444 Query: 334 IGYDVIQHEDNL 345 Y+ E + Sbjct: 445 --YNAFFKEVLV 454 >gnl|CDD|135659 PRK05925, PRK05925, aspartate kinase; Provisional. Length = 440 Score = 114 bits (287), Expect = 5e-26 Identities = 86/298 (28%), Positives = 135/298 (45%), Gaps = 59/298 (19%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR----- 55 MA +V KFGGTS+ + IR + +E +VVSA++G TD L E CR Sbjct: 1 MAPLVYKFGGTSLGTAESIRRVCDIICKEKPS----FVVVSAVAGVTDLLEEFCRLSKGK 56 Query: 56 ---------------------------------------QVTSIDNARERDVVISTGEQV 76 +++S D AR +++ GE + Sbjct: 57 REALTEKIREKHEEIAKELGIEFSLSPWWERLEHFEDVEEISSEDQAR----ILAIGEDI 112 Query: 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--ICRVDEKKIVTHLKKKQVVVIT 134 S+ L+ + + L+ Q+ I+TD + A + + L++ + ++ Sbjct: 113 SASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQ 171 Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194 GF G + T LGRGGSD SA IA KA IYTDV GIYT DP+I A L+ + Sbjct: 172 GFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPE 231 Query: 195 ISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLICSGEDIM 252 +SFEEM ++S GAKV+ ++ + + +FV S+F+ + GT I + + + Sbjct: 232 LSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFD----VTKGGTWIYASDKEV 285 >gnl|CDD|181596 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional. Length = 861 Score = 108 bits (272), Expect = 2e-24 Identities = 103/464 (22%), Positives = 192/464 (41%), Gaps = 81/464 (17%) Query: 4 IVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQ------- 56 +V+KFGGTSV+ + A V++ + G V +VVSA+SG ++ L + Sbjct: 10 VVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGAGDSA 69 Query: 57 --VTSID--------------------------------------NARERDVVISTGEQV 76 V +I + R + V+ GE + Sbjct: 70 SRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELL 129 Query: 77 SSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMAR--------ICRVDEKKIVTHLKKK 128 S+ L L++ G+ L + + + D + Sbjct: 130 STTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQP 189 Query: 129 QVVVIT-GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEP 187 V+IT GF + D LGRGGSDTSA AA + A R +I+TDV G+++ +P+ P Sbjct: 190 AQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVP 249 Query: 188 KAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGTLIC- 246 A L+ ++ ++E E+++ GAKV+ RS++ + + + + + + GT I Sbjct: 250 DARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDT----ERPDLSGTSIDG 305 Query: 247 SGEDIMEKKVI---TGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQNVS 303 E + K I GI E +++ G A +F+ + +++D+I + S Sbjct: 306 DAEPVPGVKAISRKNGIVLVSMETIGMWQQV----GFLADVFTLFKKHGLSVDLI--SSS 359 Query: 304 EDGQYVDITFT-TPSSSL--EKALAVLSDNKENIG-YDVIQHEDNLVKISAIGIGMQSYA 359 E ++T + PS +L LA LS + I +I +S +G GM+S Sbjct: 360 E----TNVTVSLDPSENLVNTDVLAALSADLSQICRVKII---VPCAAVSLVGRGMRSLL 412 Query: 360 GVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLH 403 + + +++ + ++++ ++ +ID + + + LH Sbjct: 413 HKLGPAWATFGAERVHLISQASNDLNLTFVIDESDADGLLPRLH 456 >gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional. Length = 810 Score = 105 bits (264), Expect = 3e-23 Identities = 103/465 (22%), Positives = 176/465 (37%), Gaps = 85/465 (18%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRL---------- 50 M R + KFGG+S+A+ C R A + E + ++ +VVSA T++L Sbjct: 10 MGRQLHKFGGSSLADAKCYRRVA-GILAEYSQPDDL-VVVSAAGKTTNQLISWLKLSQTD 67 Query: 51 ---------------AELCRQVTSIDNARE------------------------RDVVIS 71 +L + + AR V+ Sbjct: 68 RLSAHQVQQTLRRYQQDLIEGLLPAEQARSLLSRLISDLERLAALLDGGINDAQYAEVVG 127 Query: 72 TGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK--------IVT 123 GE S+ LM L G+ A L A +VDE + Sbjct: 128 HGEVWSARLMAALLNQQGLPAAWLDARSFLRAER-----AAQPQVDEGLSYPLLQQLLAQ 182 Query: 124 HLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDP 183 H K+ +V+TGF + LGR GSD SA I A +R I++DV G+Y+ DP Sbjct: 183 HPGKR--LVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADP 240 Query: 184 RIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQLGT 243 R A L+ + +E E++ L A V+ R+++ + L +R S++ ++ Sbjct: 241 RKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIER 300 Query: 244 LICSGEDIMEKKVITGIAYTKDEAQISLRRLRDH--PGISASIFSPLAEAHINIDMIIQN 301 ++ SG +++T D I L+ H + L A + + Sbjct: 301 VLASGT---GARIVT---SLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLR--PLAVG 352 Query: 302 VSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGV 361 V D Q + + +T S + AL +L D ++ + L ++ +G G+ Sbjct: 353 VHPDRQLLQLAYT--SEVADSALKLLDDAALPGE---LKLREGLALVALVGAGVTRNPLH 407 Query: 362 ASAFFLCLAEKGINIKAITTSEIKISV--LIDSAYTELAVRSLHS 404 F+ L K ++ I SE +S+ ++ TE ++ LH Sbjct: 408 CHRFYQQL--KDQPVEFIWQSEDGLSLVAVLRQGPTESLIQGLHQ 450 >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. Length = 327 Score = 94.5 bits (235), Expect = 4e-20 Identities = 80/272 (29%), Positives = 123/272 (45%), Gaps = 57/272 (20%) Query: 4 IVMKFGGTSVANIDCIRSA---ALHVKREVDRGQEVAMVVSAMSGETDRLAELC-----R 55 IV+KFGG+SV R A AL + + + + V +VVSA+ G TD L Sbjct: 2 IVVKFGGSSV------RYAFEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKS 55 Query: 56 QVTSIDNARE-------------------------------RDVVISTGEQVSSGLMVLA 84 I+ E RD ++S GE++S+ Sbjct: 56 AALEIEEIYEEFAKELGVDLNILSPYLKELFNPPDLPKEALRDYILSLGERLSA-----V 110 Query: 85 LQSLGIQAISLQGWQIPIMTDSLHGMARI----CRVDEKKIVTHLKKKQVVVITGFQGLS 140 + + GI + W I G A I + + K + L+ ++ VI GF G + Sbjct: 111 IFAEGINGKVVDPWDIFFAKGDF-GNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYG-N 168 Query: 141 HDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEM 200 + TLGRGGSD SAVA+ + + I +DV GI+T DP++ P A L+ +S+EE+ Sbjct: 169 LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEI 228 Query: 201 LEMSSLGAKVMQVRSVELAMLYKM-CLFVRSS 231 + LG K +Q ++ +LA YK+ LF R+ Sbjct: 229 KIAAKLGMKALQWKAADLAKEYKIPVLFGRTR 260 >gnl|CDD|131130 TIGR02075, pyrH_bact, uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. Length = 233 Score = 59.6 bits (145), Expect = 1e-09 Identities = 64/264 (24%), Positives = 110/264 (41%), Gaps = 53/264 (20%) Query: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55 R+++K G ++A + D + A +K V G EV +V+ + R Sbjct: 3 RVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG--------GNIFR 54 Query: 56 QVTSIDNARERDVVISTGEQ------VSSGLMVL-ALQSLGIQAISLQGWQIPIMTDSLH 108 V +A+E + T + V +GL + AL+ LG++ L +P + +S Sbjct: 55 GV----SAKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESY- 109 Query: 109 GMARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADR 168 +K + HL+K +VV+ +G G TT DT+A A I AD Sbjct: 110 --------IRRKAIKHLEKGKVVIFSGGTGNPF---FTT------DTAAALRAIEINADV 152 Query: 169 CDIYTD-VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLF 227 T+ V G+YT DP+ A + I++ E L+ KVM + + LA + + Sbjct: 153 ILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIV 209 Query: 228 V-----RSSFEDHGQQEQLGTLIC 246 V + + + +GTL+ Sbjct: 210 VFNIDEPGALKKVILGKGIGTLVS 233 >gnl|CDD|178986 PRK00358, pyrH, uridylate kinase; Provisional. Length = 231 Score = 55.1 bits (134), Expect = 3e-08 Identities = 64/268 (23%), Positives = 110/268 (41%), Gaps = 62/268 (23%) Query: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55 R+++K G ++A + + + A +K V+ G EVA+VV G R Sbjct: 2 RVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG--GNIFRGYIGAA 59 Query: 56 QVTSIDNARERDVVISTGEQVSSGLMV-----LALQSLGIQAISLQGWQIPIMTDSLHGM 110 +D A T + + G++ LALQ +L+ + S M Sbjct: 60 A--GMDRA--------TADYM--GMLATVMNALALQD------ALERAGVDTRVQSAIPM 101 Query: 111 ARICR-VDEKKIVTHLKKKQVVVITG-----FQGLSHDNSVTTLGRGGSDTSAVAIAAAI 164 ++ ++ + HL+K +VV+ F TT DT+A A I Sbjct: 102 PQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFF--------TT------DTAAALRAEEI 147 Query: 165 KADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKM 224 AD T+V G+Y DP+ +P A +++++E+LE KVM ++ LA K+ Sbjct: 148 GADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKI 204 Query: 225 CLFVRSSFEDHG------QQEQLGTLIC 246 + V + G + E +GTL+ Sbjct: 205 PIIV-FNMNKPGNLKRVVKGEHIGTLVS 231 >gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional. Length = 231 Score = 47.4 bits (113), Expect = 7e-06 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 8/98 (8%) Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQ 212 +DT+A A +KAD T V GIY DP+ P A + ++F E ++M G KVM Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190 Query: 213 VRSVELAMLYKMCLFVRSSFEDHG-----QQEQLGTLI 245 + + Y + + V + FE + E +GTL+ Sbjct: 191 TEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLV 228 >gnl|CDD|184032 PRK13402, PRK13402, gamma-glutamyl kinase; Provisional. Length = 368 Score = 42.3 bits (100), Expect = 2e-04 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%) Query: 142 DNSVTT--LGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196 +++VTT L G +D + +AA AD I +D+ G+Y +PR P A L+K+++ Sbjct: 136 NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVT 192 >gnl|CDD|162687 TIGR02076, pyrH_arch, uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. Length = 221 Score = 41.9 bits (99), Expect = 3e-04 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%) Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM---SSLGA 208 D A +A KAD T+V G+Y DP+ +P A K++ EE++E+ SS+ A Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKA 175 >gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. Length = 363 Score = 37.7 bits (88), Expect = 0.006 Identities = 17/53 (32%), Positives = 27/53 (50%) Query: 144 SVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKIS 196 + + G +DT + +A + AD + TDV G+Y DPR P A L+ + Sbjct: 136 ATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVE 188 >gnl|CDD|180076 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional. Length = 372 Score = 35.8 bits (84), Expect = 0.022 Identities = 17/42 (40%), Positives = 26/42 (61%) Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195 DT + +A ++AD + TDV G+YT DPR P A L+ ++ Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEV 195 >gnl|CDD|184481 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase; Provisional. Length = 268 Score = 35.3 bits (82), Expect = 0.030 Identities = 62/235 (26%), Positives = 98/235 (41%), Gaps = 52/235 (22%) Query: 4 IVMKFGGTSVANID--CIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELC----RQV 57 IV+K GG+ + + I A+L G+ V ++V S E + L E R V Sbjct: 2 IVVKIGGSVGIDPEDALIDVASL-----WADGERV-VLVHGGSDEVNELLERLGIEPRFV 55 Query: 58 TSIDNARER-------DVVISTGEQVSSGLMVLALQSLGIQAISLQGW-----------Q 99 TS R +V I ++ L V LQSLG+ A+ L G Sbjct: 56 TSPSGVTSRYTDRETLEVFIMAMALINKQL-VERLQSLGVNAVGLSGLDGGLLEGKRKKA 114 Query: 100 IPIMTDSLHGMARICR---------VDEKKIVTHLKKKQVVVITGFQGLSHDNS-VTTLG 149 + ++ + G +I R V+ + LK + V+ LS + + G Sbjct: 115 VRVVEE---GKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPP-ALSEEGEPLNVDG 170 Query: 150 RGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS 204 D +A AIA A+KA+ + +DV G+ DP E L+++I+ EE E+S Sbjct: 171 ----DRAAAAIAGALKAEALVLLSDVPGLL-RDPPDEGS--LIERITPEEAEELS 218 >gnl|CDD|180538 PRK06349, PRK06349, homoserine dehydrogenase; Provisional. Length = 426 Score = 35.1 bits (82), Expect = 0.040 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 273 RLRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQY--VDITFTTPSSSLEKALAVLSD 329 + D PG+ A I + AE I+I+ I+Q + V +T T ++L ALA + Sbjct: 354 LVADKPGVLAKIAAIFAENGISIESILQKGAGGEGAEIVIVTHETSEAALRAALAAIEA 412 >gnl|CDD|183430 PRK12314, PRK12314, gamma-glutamyl kinase; Provisional. Length = 266 Score = 33.3 bits (77), Expect = 0.10 Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%) Query: 151 GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISF--EEMLEMSS 205 G +D + +A +KAD I +D+ G+Y +PRI P A L +++ EE+L ++ Sbjct: 154 GDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAG 210 >gnl|CDD|128719 smart00442, FGF, Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities. Length = 126 Score = 32.6 bits (75), Expect = 0.17 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Query: 324 LAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKG 373 L +L D + G +++I A+ +G+ + GVAS +LC+ + G Sbjct: 15 LQILPDGTVD-GTRDESSSFTILEIIAVAVGVVAIKGVASCRYLCMNKCG 63 >gnl|CDD|179175 PRK00942, PRK00942, acetylglutamate kinase; Provisional. Length = 283 Score = 32.0 bits (74), Expect = 0.28 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 6/50 (12%) Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEM 203 DT+A AIAAA+ A++ + TDV G+ K L+ +++ E E+ Sbjct: 184 DTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEEL 227 >gnl|CDD|178923 PRK00194, PRK00194, hypothetical protein; Validated. Length = 90 Score = 30.9 bits (71), Expect = 0.65 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 13/76 (17%) Query: 276 DHPGISASIFSPLAEAHINIDMIIQNVSEDGQY------VDITFTTPS-SSLEKALAVLS 328 D GI A + + LAE ++NI I Q + + Y VDI+ + + L++ L L Sbjct: 12 DKVGIIAGVSTVLAELNVNILDISQTIMDG--YFTMIMLVDISESKKDFAELKEELEELG 69 Query: 329 DNKENIGYDV-IQHED 343 + +G + IQHE+ Sbjct: 70 ---KELGVKIRIQHEE 82 >gnl|CDD|173022 PRK14557, pyrH, uridylate kinase; Provisional. Length = 247 Score = 30.2 bits (68), Expect = 0.90 Identities = 32/133 (24%), Positives = 60/133 (45%), Gaps = 18/133 (13%) Query: 120 KIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD-VCGI 178 + V HL +V+ G G VTT D +V A + +D + V G+ Sbjct: 117 RAVHHLDNGYIVIFGGGNGQPF---VTT------DYPSVQRAIEMNSDAILVAKQGVDGV 167 Query: 179 YTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQ 238 +T+DP+ A + +K+++ +++ +VM ++ LA Y + V +F++ G Sbjct: 168 FTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHV-FNFDEPGVM 223 Query: 239 EQLGTLICSGEDI 251 + IC GE + Sbjct: 224 RR----ICLGEHV 232 >gnl|CDD|181679 PRK09181, PRK09181, aspartate kinase; Validated. Length = 475 Score = 29.9 bits (68), Expect = 1.4 Identities = 80/366 (21%), Positives = 152/366 (41%), Gaps = 71/366 (19%) Query: 66 RDVVISTGEQVSSGLMVLALQSLGIQA--ISLQGWQIPIMTDSLHGMARICRVDEKKIVT 123 R+++ S GE S+ L LQ+ G+ A + L GW D +DE +I Sbjct: 139 REMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWD-----DDDPL-----TLDE-RIKK 187 Query: 124 HLKK----KQVVVITGF----QGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDV 175 K K++ ++TG+ +GL T RG S+ + IA AD I+ + Sbjct: 188 AFKDIDVTKELPIVTGYAKCKEGLMR-----TFDRGYSEMTFSRIAVLTGADEAIIHKE- 241 Query: 176 CGIY---TTDPRI--EPKAHLMKKISFEEMLEMSSLG--------AKVMQVRSVELAMLY 222 Y + DP++ E K + + +++ ++++LG AK ++ + L Sbjct: 242 ---YHLSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLR--- 295 Query: 223 KMCLFVRSSFE-DHGQQEQLGTLICSGEDIMEKKVITGIAYTKDEAQISL--RRLRDHPG 279 ++++FE +H GTLI + + + E+ + IA + + + + + G Sbjct: 296 -----IKNTFEPEHP-----GTLI-TKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDG 344 Query: 280 ISASIFSPLAEAHINIDMIIQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVI 339 I L ++ N + Y+ +L++ +A L K +V Sbjct: 345 YDLEILEILTRHKVSYISKATNANTITHYLW----GSLKTLKRVIAELE--KRYPNAEVT 398 Query: 340 QHEDNLVKISAIGIGMQSYAGVASAFFLCLAEKGINIKAI--TTSEIKISVLIDSAYTEL 397 + +SAIG + +A A LAE GIN+ A+ + ++ + ++D E Sbjct: 399 VR--KVAIVSAIGSNIAVPGVLAKA-VQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK 455 Query: 398 AVRSLH 403 A+ +LH Sbjct: 456 AICALH 461 Score = 28.7 bits (65), Expect = 2.7 Identities = 18/52 (34%), Positives = 24/52 (46%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAE 52 M V K GGTS++ D + + R+ + VVSA G TD L E Sbjct: 2 MMHTVEKIGGTSMSAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLE 53 >gnl|CDD|178128 PLN02512, PLN02512, acetylglutamate kinase. Length = 309 Score = 29.3 bits (66), Expect = 1.7 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%) Query: 153 SDTSAVAIAAAIKADRCDIYTDVCGIYTT--DPRIEPKAHLMKKISFEEMLEM 203 +DT+A IAAA+ A++ + TDV G+ DP L+K++ + + ++ Sbjct: 207 ADTAAGEIAAALGAEKLILLTDVAGVLEDKDDP-----GSLVKELDIKGVRKL 254 >gnl|CDD|173021 PRK14556, pyrH, uridylate kinase; Provisional. Length = 249 Score = 28.8 bits (64), Expect = 2.5 Identities = 51/223 (22%), Positives = 90/223 (40%), Gaps = 41/223 (18%) Query: 1 MARIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSA---MSGETDRL 50 + RI++K G S++ N++ + +K + G E+A+VV + G Sbjct: 15 LKRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANF 74 Query: 51 AELCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMT-DSLHG 109 R+ T+ + +++ + LAL+ + I +G + + + G Sbjct: 75 GNKIRRATA-----------DSMGMIATMINALALRDMLIS----EGVDAEVFSAKGVDG 119 Query: 110 MARICRVDEKKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRC 169 + ++ E L K +V++ G G + VTT DT+A A I AD Sbjct: 120 LLKVASAHE--FNQELAKGRVLIFAGGTG---NPFVTT------DTTASLRAVEIGADAL 168 Query: 170 DIYTDVCGIYTTDPRIEPKAHLMKKISFEEM----LEMSSLGA 208 T V G+Y DP A K++F E+ L + LGA Sbjct: 169 LKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGA 211 >gnl|CDD|184346 PRK13820, PRK13820, argininosuccinate synthase; Provisional. Length = 394 Score = 28.7 bits (65), Expect = 2.8 Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 20/111 (18%) Query: 304 EDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIG---------IG 354 ++ + V+I F E+ + V + ++ G ++I+ + + +G +G Sbjct: 210 DEPEIVEIEF-------EEGVPVAINGEKMDGVELIRKLNEIAGKHGVGRTDMMEDRVLG 262 Query: 355 MQS---YAGVASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSL 402 ++S Y A A L A K + +T E+K ++DS + ELA L Sbjct: 263 LKSRENYEHPA-ATVLLTAHKALEQLVLTREELKFKEIVDSKWAELAYEGL 312 >gnl|CDD|162026 TIGR00761, argB, acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. Length = 231 Score = 28.4 bits (64), Expect = 3.2 Identities = 35/125 (28%), Positives = 57/125 (45%), Gaps = 15/125 (12%) Query: 81 MVLALQSLGIQAISLQGWQIPIMT------DSLHGMARICRVDEKKIVTHLKKKQVVVIT 134 +V L GI AI L G + T + L + I +V++ + LK + VI+ Sbjct: 82 LVALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVIS 141 Query: 135 GFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKK 194 L+ + + +DT+A A+AAA+ A++ + TDV GI D L+ + Sbjct: 142 SL-ALTAEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGD-----GQSLISE 192 Query: 195 ISFEE 199 I EE Sbjct: 193 IPLEE 197 >gnl|CDD|183466 PRK12354, PRK12354, carbamate kinase; Reviewed. Length = 307 Score = 27.9 bits (63), Expect = 5.0 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMS----SLGAK 209 D +A +A + AD I TDV +Y D +P + + + +E+ E+ S+G K Sbjct: 206 DLAAALLAEQLDADLLLILTDVDAVY-LDWG-KPTQRAIAQATPDELRELGFAAGSMGPK 263 Query: 210 V 210 V Sbjct: 264 V 264 >gnl|CDD|183162 PRK11493, sseA, 3-mercaptopyruvate sulfurtransferase; Provisional. Length = 281 Score = 27.7 bits (62), Expect = 5.3 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 5/50 (10%) Query: 47 TDRLAE-LCRQVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISL 95 TD L + S D R ++ S G V++ ++VLAL +L + + L Sbjct: 216 TDELDAIFFGRGVSFD----RPIIASCGSGVTAAVVVLALATLDVPNVKL 261 >gnl|CDD|178039 PLN02418, PLN02418, delta-1-pyrroline-5-carboxylate synthase. Length = 718 Score = 27.8 bits (62), Expect = 5.4 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%) Query: 154 DTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQV 213 D+ A +A +KAD + +DV G+YT P +P + L+ E+ + + G K Sbjct: 178 DSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVG 236 Query: 214 R 214 R Sbjct: 237 R 237 >gnl|CDD|185667 PTZ00489, PTZ00489, glutamate 5-kinase; Provisional. Length = 264 Score = 27.7 bits (61), Expect = 5.8 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Query: 141 HDNSVTTLGR---GGSDTSAVAIAAAIKADRCDIYTDVCGIYTTDPRIEPKAHLMKKI 195 ++N T L G +D + +A KAD I +D+ G YT +PR A + + Sbjct: 134 NENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVV 191 >gnl|CDD|180460 PRK06196, PRK06196, oxidoreductase; Provisional. Length = 315 Score = 27.3 bits (61), Expect = 8.1 Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%) Query: 277 HPGISASIFSPLAEAHINI-DMIIQN-VSEDGQYVDITFTTPS 317 HPG I +PL + H+ + + V E G +D F TP+ Sbjct: 210 HPG---GILTPL-QRHLPREEQVALGWVDEHGNPIDPGFKTPA 248 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.319 0.133 0.367 Gapped Lambda K H 0.267 0.0646 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 6,376,371 Number of extensions: 408751 Number of successful extensions: 994 Number of sequences better than 10.0: 1 Number of HSP's gapped: 926 Number of HSP's successfully gapped: 74 Length of query: 411 Length of database: 5,994,473 Length adjustment: 96 Effective length of query: 315 Effective length of database: 3,920,105 Effective search space: 1234833075 Effective search space used: 1234833075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 58 (26.3 bits)