BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] (411 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 411 Score = 840 bits (2170), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/411 (100%), Positives = 411/411 (100%) Query: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI Sbjct: 1 MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60 Query: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK Sbjct: 61 DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120 Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT Sbjct: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180 Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ Sbjct: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240 Query: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ Sbjct: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300 Query: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG Sbjct: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360 Query: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ Sbjct: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411 >gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62] Length = 242 Score = 47.0 bits (110), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 32/225 (14%) Query: 3 RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55 R+++K G ++A +ID + + +G E+ +VV G R +++ Sbjct: 8 RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVA 65 Query: 56 QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115 + + ER V S G +S+ + LAL ++L+ +P + S M ++C Sbjct: 66 ENYLL---CERSTVDSMG-MLSTVINALALD------LALRKINVPTVILSSIFMPQVCE 115 Query: 116 VDE-KKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD 174 V + V++L + +VV+ +G G N+ T +D++A A+ I AD T Sbjct: 116 VFSCRNAVSYLSQGKVVIFSGGTG----NAFLT-----TDSAAALRASEIGADVILKGTQ 166 Query: 175 VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELA 219 V G+Y+ DPR+ + +++ + +E G KVM SV LA Sbjct: 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA 208 >gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter asiaticus str. psy62] Length = 884 Score = 26.9 bits (58), Expect = 0.66, Method: Compositional matrix adjust. Identities = 10/32 (31%), Positives = 22/32 (68%) Query: 327 LSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358 ++DNK+N +V++ + +K S++G+G S+ Sbjct: 1 MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSF 32 >gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein [Candidatus Liberibacter asiaticus str. psy62] Length = 342 Score = 26.2 bits (56), Expect = 1.1, Method: Compositional matrix adjust. Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%) Query: 160 IAAAIKADRCDIYT-DVCGIYT---TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQ 212 I AA +A RCD YT D+ +Y T+ R P H++ +++ S L ++Q Sbjct: 182 IDAAYRAHRCDAYTGDISALYALKLTNDR--PSEHVI----LPDIISKSPLAPAIIQ 232 >gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62] Length = 320 Score = 23.9 bits (50), Expect = 5.7, Method: Compositional matrix adjust. Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%) Query: 343 DNLVKISAIGIGMQSYAGVASAFFLCL 369 DNL I +G G++ YA ++F +C+ Sbjct: 95 DNLKAIEKVGAGIRKYA--PNSFVICI 119 >gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus str. psy62] Length = 232 Score = 23.5 bits (49), Expect = 6.6, Method: Compositional matrix adjust. Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%) Query: 283 SIFSPLAEAHINIDMI----IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIG 335 SIF + + H+N I I++V +GQ+++ S E+ VL NIG Sbjct: 99 SIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIG 155 >gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus Liberibacter asiaticus str. psy62] Length = 853 Score = 23.5 bits (49), Expect = 6.9, Method: Compositional matrix adjust. Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Query: 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVD 310 +R HP +F + +AH ++ I+ V +DG+ D Sbjct: 666 VRRHP-YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD 701 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.133 0.367 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 235,090 Number of Sequences: 1233 Number of extensions: 9128 Number of successful extensions: 46 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 10 Number of HSP's that attempted gapping in prelim test: 39 Number of HSP's gapped (non-prelim): 16 length of query: 411 length of database: 328,796 effective HSP length: 76 effective length of query: 335 effective length of database: 235,088 effective search space: 78754480 effective search space used: 78754480 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 39 (19.6 bits)