BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus
Liberibacter asiaticus str. psy62]
         (411 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780873|ref|YP_003065286.1| aspartate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 411

 Score =  840 bits (2170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/411 (100%), Positives = 411/411 (100%)

Query: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60
           MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI
Sbjct: 1   MARIVMKFGGTSVANIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCRQVTSI 60

Query: 61  DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120
           DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK
Sbjct: 61  DNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICRVDEKK 120

Query: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180
           IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT
Sbjct: 121 IVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTDVCGIYT 180

Query: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240
           TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ
Sbjct: 181 TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELAMLYKMCLFVRSSFEDHGQQEQ 240

Query: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300
           LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ
Sbjct: 241 LGTLICSGEDIMEKKVITGIAYTKDEAQISLRRLRDHPGISASIFSPLAEAHINIDMIIQ 300

Query: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360
           NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG
Sbjct: 301 NVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIGYDVIQHEDNLVKISAIGIGMQSYAG 360

Query: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411
           VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ
Sbjct: 361 VASAFFLCLAEKGINIKAITTSEIKISVLIDSAYTELAVRSLHSCYGLDVQ 411


>gi|254780777|ref|YP_003065190.1| uridylate kinase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 242

 Score = 47.0 bits (110), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 32/225 (14%)

Query: 3   RIVMKFGGTSVA-------NIDCIRSAALHVKREVDRGQEVAMVVSAMSGETDRLAELCR 55
           R+++K  G ++A       +ID +      +     +G E+ +VV    G   R +++  
Sbjct: 8   RVLLKVSGEALAGISGFGVDIDSVNRICADIAEVYAKGIEIGIVVGG--GNIFRGSQVVA 65

Query: 56  QVTSIDNARERDVVISTGEQVSSGLMVLALQSLGIQAISLQGWQIPIMTDSLHGMARICR 115
           +   +    ER  V S G  +S+ +  LAL       ++L+   +P +  S   M ++C 
Sbjct: 66  ENYLL---CERSTVDSMG-MLSTVINALALD------LALRKINVPTVILSSIFMPQVCE 115

Query: 116 VDE-KKIVTHLKKKQVVVITGFQGLSHDNSVTTLGRGGSDTSAVAIAAAIKADRCDIYTD 174
           V   +  V++L + +VV+ +G  G    N+  T     +D++A   A+ I AD     T 
Sbjct: 116 VFSCRNAVSYLSQGKVVIFSGGTG----NAFLT-----TDSAAALRASEIGADVILKGTQ 166

Query: 175 VCGIYTTDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQVRSVELA 219
           V G+Y+ DPR+   +     +++ + +E    G KVM   SV LA
Sbjct: 167 VDGVYSADPRVHASSTRFDSLTYNQFIEK---GLKVMDCASVVLA 208


>gi|254780787|ref|YP_003065200.1| translation initiation factor IF-2 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 884

 Score = 26.9 bits (58), Expect = 0.66,   Method: Compositional matrix adjust.
 Identities = 10/32 (31%), Positives = 22/32 (68%)

Query: 327 LSDNKENIGYDVIQHEDNLVKISAIGIGMQSY 358
           ++DNK+N   +V++ +   +K S++G+G  S+
Sbjct: 1   MTDNKDNKKSNVVEKKTLTLKTSSLGVGHSSF 32


>gi|254780170|ref|YP_003064583.1| cationic amino acid ABC transporter, periplasmic binding protein
           [Candidatus Liberibacter asiaticus str. psy62]
          Length = 342

 Score = 26.2 bits (56), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 160 IAAAIKADRCDIYT-DVCGIYT---TDPRIEPKAHLMKKISFEEMLEMSSLGAKVMQ 212
           I AA +A RCD YT D+  +Y    T+ R  P  H++      +++  S L   ++Q
Sbjct: 182 IDAAYRAHRCDAYTGDISALYALKLTNDR--PSEHVI----LPDIISKSPLAPAIIQ 232


>gi|254781048|ref|YP_003065461.1| malate dehydrogenase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 320

 Score = 23.9 bits (50), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)

Query: 343 DNLVKISAIGIGMQSYAGVASAFFLCL 369
           DNL  I  +G G++ YA   ++F +C+
Sbjct: 95  DNLKAIEKVGAGIRKYA--PNSFVICI 119


>gi|254780577|ref|YP_003064990.1| phosphatidylserine decarboxylase [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 232

 Score = 23.5 bits (49), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 283 SIFSPLAEAHINIDMI----IQNVSEDGQYVDITFTTPSSSLEKALAVLSDNKENIG 335
           SIF  + + H+N   I    I++V  +GQ+++      S   E+   VL     NIG
Sbjct: 99  SIFMNIFDCHVNRMPIGGEVIKSVHRNGQFMNAALDKASEQNERQSLVLKTIHGNIG 155


>gi|254780877|ref|YP_003065290.1| ATP-dependent Clp protease, ATP-binding subunit protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 853

 Score = 23.5 bits (49), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 274 LRDHPGISASIFSPLAEAHINIDMIIQNVSEDGQYVD 310
           +R HP     +F  + +AH ++  I+  V +DG+  D
Sbjct: 666 VRRHP-YQVVLFDEIEKAHSDVHNILLQVLDDGRLTD 701


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.133    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 235,090
Number of Sequences: 1233
Number of extensions: 9128
Number of successful extensions: 46
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 39
Number of HSP's gapped (non-prelim): 16
length of query: 411
length of database: 328,796
effective HSP length: 76
effective length of query: 335
effective length of database: 235,088
effective search space: 78754480
effective search space used: 78754480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 39 (19.6 bits)