HHsearch alignment for GI: 254780874 and conserved domain: TIGR03072
>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00 E-value=0 Score=568.62 Aligned_cols=196 Identities=29% Similarity=0.386 Sum_probs=184.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC-CCCCEEEEEEECCCHHHHHHCCCCCEEEEEECC
Q ss_conf 3788622688521788999999999999876498400132113544-772111377750311121000246502676125
Q gi|254780874|r 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 (357)
Q Consensus 112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~-aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~ 190 (357)
T Consensus 1 vileIraG~GG~Ea~lfa~~L~rMY~r~a~~~gwk~evi~~~~~~~~Gg~ksv~~~i~G~~~~~~~~~~~G~~~~v~~sp 80 (200)
T TIGR03072 1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP 80 (200)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCEEEEEECC
T ss_conf 98999389986999999999999999999985998999857777779950899999995043078887756179996679
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHH
Q ss_conf 45678511016888853033433222454347999852888752000632121588964984488-84365413589999
Q gi|254780874|r 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 (357)
Q Consensus 191 ~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A 269 (357)
T Consensus 81 ~~~~~~r~t~~v~v~~~~~~~----ei~~~Dlridt~RssGaGGQhVNkT~SAVRitH~PTGi~V~~q~eRSQ~~Nk~~A 156 (200)
T TIGR03072 81 YRPHHRRKNWFIGVQRFSASE----EATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA 156 (200)
T ss_pred CCCCCCEEEEEEEEEECCCCC----CCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHH
T ss_conf 767786799999977516557----8881234899987368998850775634999974884799975855479999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
Q ss_conf 9999999999999999999987446522467423822104489
Q gi|254780874|r 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 (357)
Q Consensus 270 ~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~ 312 (357)
T Consensus 157 l~~L~arL~~~~~~~~~~~-~~~r~~~~~~~~Rs~kIRTYng~ 198 (200)
T TIGR03072 157 TLLLAVRLADLQQEQAAAL-RAERRTAHHQIERGNPVRVFKGE 198 (200)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEECCC
T ss_conf 9999999999999999999-99998667987256872512798