HHsearch alignment for GI: 254780874 and conserved domain: TIGR03072

>TIGR03072 release_prfH putative peptide chain release factor H. Members of this protein family are bacterial proteins homologous to peptide chain release factors 1 (RF-1, product of the prfA gene), and 2 (RF-2, product of the prfB gene). The member from Escherichia coli K-12, designated prfH, appears to be a pseudogene. This class I release factor is always found as the downstream gene of a two-gene operon.
Probab=100.00  E-value=0  Score=568.62  Aligned_cols=196  Identities=29%  Similarity=0.386  Sum_probs=184.3

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC-CCCCEEEEEEECCCHHHHHHCCCCCEEEEEECC
Q ss_conf             3788622688521788999999999999876498400132113544-772111377750311121000246502676125
Q gi|254780874|r  112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGVHRVQRVPA  190 (357)
Q Consensus       112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~-aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~  190 (357)
T Consensus         1 vileIraG~GG~Ea~lfa~~L~rMY~r~a~~~gwk~evi~~~~~~~~Gg~ksv~~~i~G~~~~~~~~~~~G~~~~v~~sp   80 (200)
T TIGR03072         1 ILLQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAAAALADRWEGTLLWICPSP   80 (200)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEEEECCEEEEEEECCCEEEEEECC
T ss_conf             98999389986999999999999999999985998999857777779950899999995043078887756179996679


Q ss_pred             CCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHH
Q ss_conf             45678511016888853033433222454347999852888752000632121588964984488-84365413589999
Q gi|254780874|r  191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA  269 (357)
Q Consensus       191 ~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A  269 (357)
T Consensus        81 ~~~~~~r~t~~v~v~~~~~~~----ei~~~Dlridt~RssGaGGQhVNkT~SAVRitH~PTGi~V~~q~eRSQ~~Nk~~A  156 (200)
T TIGR03072        81 YRPHHRRKNWFIGVQRFSASE----EATEDEIRFETLRSSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLA  156 (200)
T ss_pred             CCCCCCEEEEEEEEEECCCCC----CCCCHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHHHH
T ss_conf             767786799999977516557----8881234899987368998850775634999974884799975855479999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCC
Q ss_conf             9999999999999999999987446522467423822104489
Q gi|254780874|r  270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS  312 (357)
Q Consensus       270 ~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~  312 (357)
T Consensus       157 l~~L~arL~~~~~~~~~~~-~~~r~~~~~~~~Rs~kIRTYng~  198 (200)
T TIGR03072       157 TLLLAVRLADLQQEQAAAL-RAERRTAHHQIERGNPVRVFKGE  198 (200)
T ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHCCCCCCCCCCCEEECCC
T ss_conf             9999999999999999999-99998667987256872512798