HHsearch alignment for GI: 254780874 and conserved domain: pfam00472
>pfam00472 RF-1 RF-1 domain. This domain is found in peptide chain release factors such as RF-1 and RF-2, and a number of smaller proteins of unknown function. This domain contains the peptidyl-tRNA hydrolase activity. The domain contains a highly conserved motif GGQ, where the glutamine is thought to coordinate the water that mediates the hydrolysis.
Probab=100.00 E-value=7.3e-38 Score=293.80 Aligned_cols=113 Identities=54% Similarity=0.924 Sum_probs=107.9
Q ss_pred ECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 033433222454347999852888752000632121588964984488-8436541358999999999999999999999
Q gi|254780874|r 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 (357)
Q Consensus 208 P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~ 286 (357)
T Consensus 1 ~~~~~~~i~i~~~dl~~~~~RssGpGGQ~VNKt~saV~l~h~ptgi~v~~q~~RSq~~Nr~~A~~~L~~~l~~~~~~k~~ 80 (114)
T pfam00472 1 PLDEEVEIEIPPSDLRIDTFRSSGPGGQNVNKTESAVRLTHLPTGIVVKCQEERSQHKNREKALERLKAKLYEAELQKKR 80 (114)
T ss_pred CCCCCCCEECCHHHEEEEEEECCCCCCCCCCHHHEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98885111418799489988878986565472041589998476489997077888999999999999999999888999
Q ss_pred HHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEE
Q ss_conf 9998744652246742382210448998112432
Q gi|254780874|r 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 (357)
Q Consensus 287 ~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR 320 (357)
T Consensus 81 ~~~~~~r~~~~~~~~~~~kiRtY~~~~~~Vkd~R 114 (114)
T pfam00472 81 EETKPTRKSQVRRGDRKEKIRTYNFPQGRVKDHR 114 (114)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCEECCCCCCCCCC
T ss_conf 9987998600366855466001337877767697