HHsearch alignment of GI: 254780874 and MMDB domain: 1rq0_A_84-191_274-312

>1rq0_A (A:84-191,A:274-312) RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima}
Probab=100.00  E-value=0  Score=388.33  Aligned_cols=146  Identities=58%  Similarity=0.963  Sum_probs=141.7

Q ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEE
Q ss_conf             54037886226885217889999999999998764984001321135447721113777503111210002465026761
Q gi|254780874|r  109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV  188 (357)
Q Consensus       109 ~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRi  188 (357)
                      +++|+|+|+||+||+||++||++||+||.+||+++||++++++.++++.+|+|||++.|+|++||++|++|+|||||||+
T Consensus         2 ~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~G~ksa~l~i~G~~ay~~l~~E~GvHrvir~   81 (147)
T 1rq0_A            2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRV   81 (147)
T ss_dssp             CSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEEC
T ss_pred             CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCEEEEEEE
T ss_conf             45617999447770578899999999999998760345321223332334312121111023304543221100699973


Q ss_pred             CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHH
Q ss_conf             25456785110168888530334332224543479998528887520006321215889649844888436541358999
Q gi|254780874|r  189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLR  268 (357)
Q Consensus       189 p~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptgi~v~~~eRsQ~~Nk~~  268 (357)
                      |||++++|||||||+|+|+|.+++.+                                                      
T Consensus        82 sp~~~~~kr~ts~v~V~vlP~~~e~~------------------------------------------------------  107 (147)
T 1rq0_A           82 PVTESGGRIHTSTATVAVLPEIEEKD------------------------------------------------------  107 (147)
T ss_dssp             CTTSCSCCCEEEEEEEEEEECCCGGG------------------------------------------------------
T ss_pred             CCCCCCCCEEEEEEEEEEEEECCCCC------------------------------------------------------
T ss_conf             36677675566767999997246551------------------------------------------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEECCHHHHHCCC
Q ss_conf             9999999999999999999998744652246742382210448998112432164417877872886
Q gi|254780874|r  269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY  335 (357)
Q Consensus       269 A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~~~~~~~l~G~  335 (357)
                                                 .||+++||+|||||||||+||||||+|+++++|+.||+|+
T Consensus       108 ---------------------------~~~~~~rs~kirtynf~~~rvtdhr~~~~~~~~~~~~~ge  147 (147)
T 1rq0_A          108 ---------------------------IIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGD  147 (147)
T ss_dssp             ---------------------------S-----CCCEEEEEETTTTEEEETTTTEEESCHHHHHTTC
T ss_pred             ---------------------------ECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCCC
T ss_conf             ---------------------------6333456799704018988742312598027867874987