HHsearch alignment of GI: 254780874 and MMDB domain: 1rq0_A_84-191_274-312
>1rq0_A (A:84-191,A:274-312) RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima}
Probab=100.00 E-value=0 Score=388.33 Aligned_cols=146 Identities=58% Similarity=0.963 Sum_probs=141.7
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEE
Q ss_conf 54037886226885217889999999999998764984001321135447721113777503111210002465026761
Q gi|254780874|r 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 (357)
Q Consensus 109 ~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRi 188 (357)
+++|+|+|+||+||+||++||++||+||.+||+++||++++++.++++.+|+|||++.|+|++||++|++|+|||||||+
T Consensus 2 ~~~~~leI~aG~GG~Ea~~~a~~L~~mY~~~a~~~g~~~evi~~~~~~~~G~ksa~l~i~G~~ay~~l~~E~GvHrvir~ 81 (147)
T 1rq0_A 2 SDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRV 81 (147)
T ss_dssp CSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEESTTHHHHHGGGCEEEEEEEC
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHEEECCCCCHHHHCCCCCEEEEEEE
T ss_conf 45617999447770578899999999999998760345321223332334312121111023304543221100699973
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCHHHHHH
Q ss_conf 25456785110168888530334332224543479998528887520006321215889649844888436541358999
Q gi|254780874|r 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLR 268 (357)
Q Consensus 189 p~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~ptgi~v~~~eRsQ~~Nk~~ 268 (357)
|||++++|||||||+|+|+|.+++.+
T Consensus 82 sp~~~~~kr~ts~v~V~vlP~~~e~~------------------------------------------------------ 107 (147)
T 1rq0_A 82 PVTESGGRIHTSTATVAVLPEIEEKD------------------------------------------------------ 107 (147)
T ss_dssp CTTSCSCCCEEEEEEEEEEECCCGGG------------------------------------------------------
T ss_pred CCCCCCCCEEEEEEEEEEEEECCCCC------------------------------------------------------
T ss_conf 36677675566767999997246551------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEECCHHHHHCCC
Q ss_conf 9999999999999999999998744652246742382210448998112432164417877872886
Q gi|254780874|r 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY 335 (357)
Q Consensus 269 A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~~~~~~~l~G~ 335 (357)
.||+++||+|||||||||+||||||+|+++++|+.||+|+
T Consensus 108 ---------------------------~~~~~~rs~kirtynf~~~rvtdhr~~~~~~~~~~~~~ge 147 (147)
T 1rq0_A 108 ---------------------------IIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQEILDGD 147 (147)
T ss_dssp ---------------------------S-----CCCEEEEEETTTTEEEETTTTEEESCHHHHHTTC
T ss_pred ---------------------------ECCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCHHHHHCCC
T ss_conf ---------------------------6333456799704018988742312598027867874987