HHsearch results for GI: 254780874 and protein with PDBid: 1rq0_A
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=100.00 E-value=0 Score=900.54 Aligned_cols=331 Identities=46% Similarity=0.737 Sum_probs=303.7
Q ss_pred HHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998538531579-99999999879999999999999999899999997203785356654332223320005
Q gi|254780874|r 12 LKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEI 90 (357)
Q Consensus 12 l~~rl~ELE~~Lsdp~~w~d-~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~~l~~~l 90 (357)
|+.|+.+|+.+|++|++|+| ++++++++++|+++++.++.+. ++.++.+++.+. .|.+ .|+..+..++
T Consensus 1 L~er~~ELe~~ls~P~~~~d~~~~l~ke~~~L~~i~~l~~~l~----d~~el~el~~ee-~d~e------~el~~l~~~l 69 (342)
T 1rq0_A 1 MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLREE-GENE------LEIEKYEKEL 69 (342)
T ss_dssp CTTTTTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTT-TTCC------SCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCC-CCCH------HHHHHHHHHH
T ss_conf 9689999999971899899999999999999999999999999----899999997458-9858------9999999999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECC
Q ss_conf 77888999864000113554037886226885217889999999999998764984001321135447721113777503
Q gi|254780874|r 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 (357)
Q Consensus 91 ~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~ 170 (357)
+.++.+|.++ .+|+|++||||||||||||+||||||+||||||+|||+++||+++++++++|+.||||+|++.|+|+
T Consensus 70 ~~l~~el~~l---l~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~~~gGik~~~~~I~G~ 146 (342)
T 1rq0_A 70 DQLYQELLFL---LSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGK 146 (342)
T ss_dssp HHHHHHHHHH---HSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEEST
T ss_pred HHHHHHHHHH---CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECC
T ss_conf 9999998740---7877778869999679985379999999999999997651335422333544456764136998341
Q ss_pred CHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 11121000246502676125456785110168888530334332224543479998528887520006321215889649
Q gi|254780874|r 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 (357)
Q Consensus 171 ~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~p 250 (357)
+|||+||+|+|||||||||||+++||||||||+|+|+|+.++++|+|+|+||+|||||||||||||||||+|||||||+|
T Consensus 147 ~ayg~Lk~E~GvHRvqRvp~~es~gr~hTS~a~V~v~p~~~~~~i~i~~~dl~i~t~RssG~GGQ~VNkt~saVRitH~P 226 (342)
T 1rq0_A 147 NAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226 (342)
T ss_dssp THHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETT
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCEEECHHHEEEEEECCCCCCCCCCCCCCEEEEEEECC
T ss_conf 26653101065589997179888887576777999946677665365522402541037874324466666069999748
Q ss_pred CCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEECCHH
Q ss_conf 84488-84365413589999999999999999999999998744652246742382210448998112432164417877
Q gi|254780874|r 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 (357)
Q Consensus 251 tgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~~~~~ 329 (357)
|||+| ||+|||||+||++||++|++|||+.+.+++.++....|++|||+|+||+|||||||||+||||||||++++|++
T Consensus 227 TGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~ig~~~rs~~iRtY~fp~~rV~DhR~~~~~~~l~ 306 (342)
T 1rq0_A 227 TGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQ 306 (342)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTTTEEEETTTTEEESCHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCHH
T ss_conf 86388734602389999999999999999999999999999987636002356788626318988743312598107867
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 872886699999999999999987405
Q gi|254780874|r 330 YVLQGYIDDIINPLLTAHQAKMIGSAS 356 (357)
Q Consensus 330 ~~l~G~l~~~i~~~~~~~~~~~l~~~~ 356 (357)
+||+|+||+||++|+.++..++|.++.
T Consensus 307 ~vl~G~ld~~i~~~~~~~~~~~l~~~~ 333 (342)
T 1rq0_A 307 EILDGDLDEIISKLIEHDIENNLEEVL 333 (342)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 875987399999999999999999986