HHsearch results for GI: 254780874 and protein with PDBid: 2b3t_B
>2b3t_B RF-1, peptide chain release factor 1; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: e.38.1.1
Probab=100.00 E-value=0 Score=958.10 Aligned_cols=353 Identities=49% Similarity=0.817 Sum_probs=339.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
Q ss_conf 9678689899999999999998538531579---9999999987999999999999999989999999720378535665
Q gi|254780874|r 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 (357)
Q Consensus 1 m~mi~~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~e 77 (357)
|.-...+||+.+..|+++|+.+|++|++|+| +++++|+++.|+++++.++.|.....++.++.+|+. |+++.+
T Consensus 1 M~~sl~~kLe~i~~r~~eLe~~lsdp~~w~D~~~a~~l~kE~~~L~~~v~~~~~~~~~~~~l~el~el~~----d~e~~e 76 (360)
T 2b3t_B 1 MKPSIVAKLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD----DPEMRE 76 (360)
T ss_dssp ------CCSHHHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC---------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHH
T ss_conf 9778999999999999999998719862009999999999999999999999999999998999998744----840189
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCC
Q ss_conf 43322233200057788899986400011355403788622688521788999999999999876498400132113544
Q gi|254780874|r 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 (357)
Q Consensus 78 lAeeEl~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~ 157 (357)
++++|+..+..+++.++++++.+|+|+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.
T Consensus 77 la~ee~~~~~~~l~~l~~~l~~~Ll~~~~~D~~nailEIraGaGG~EA~~fA~~L~rMY~r~ae~~gwk~eii~~~~~e~ 156 (360)
T 2b3t_B 77 MAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEH 156 (360)
T ss_dssp ------------------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999999999999999999997079995645584999925888467999999999999999976588527844215677
Q ss_pred CCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 7721113777503111210002465026761254567851101688885303343-322245434799985288875200
Q gi|254780874|r 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 (357)
Q Consensus 158 aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~rssG~GGQ~ 236 (357)
||||+|++.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ++++|||+||+|||||||||||||
T Consensus 157 ~G~k~~~~~I~G~~ayg~Lk~EsGVHRvqRvp~~~~~~r~hTs~~~v~v~p~~~~~~~~~i~~~dl~i~t~RssG~GGQ~ 236 (360)
T 2b3t_B 157 GGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQH 236 (360)
T ss_dssp SSEEEEEEEECSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTT
T ss_pred CCEEEEEEEEECCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 86258999997576124554347862699747888888267777799995577753001427111569987779999877
Q ss_pred CCCCCCEEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCC
Q ss_conf 0632121588964984488-843654135899999999999999999999999987446522467423822104489981
Q gi|254780874|r 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 (357)
Q Consensus 237 vN~t~savri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~r 315 (357)
||||+|||||||+||||+| ||+|||||+||++||++||+|||+.+.+++.++..+.||+|||||+||+|||||||||+|
T Consensus 237 VNkt~sAVRitH~PTGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~rk~~vg~~~rse~IRtYn~p~~~ 316 (360)
T 2b3t_B 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGR 316 (360)
T ss_dssp CCCSSEEEEEEETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTE
T ss_pred CCCHHHCEEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCC
T ss_conf 66131212789658876999727024799999999999999999999999999999876004001233752745179776
Q ss_pred EEEEECCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 124321644178778728866999999999999999874059
Q gi|254780874|r 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357)
Q Consensus 316 v~DhR~~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357)
|||||||++++|+++||+|+||+||++|+.|+++++|++++|
T Consensus 317 V~DhR~~~~~~~~~~vl~G~ld~~i~a~~~~~~~~~l~~~~~ 358 (360)
T 2b3t_B 317 VTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 (360)
T ss_dssp EEEGGGTEEESCHHHHHHTCTHHHHHHHHHHHHHHHCC----
T ss_pred CHHHCCCCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 443145887778357649872999999999999999987555