HHsearch results for GI: 254780874 and protein with PDBid: 3d5a_X
>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00 E-value=0 Score=949.28 Aligned_cols=348 Identities=45% Similarity=0.718 Sum_probs=338.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf 89899999999999998538531579---999999998799999999999999998999999972037853566543322
Q gi|254780874|r 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 (357)
Q Consensus 6 ~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeE 82 (357)
-+||+.+..|+.+|+.+|++|+||+| +++++|+++.|+++++.++.|.+...++.++.+|+ +|+++.+++++|
T Consensus 2 ~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~~dl~el~el~----~D~e~~ela~ee 77 (354)
T 3d5a_X 2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAKAE 77 (354)
T ss_dssp HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHH
T ss_conf 1579999999999999861983223999999999999999999999999999999899999885----281107899999
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE
Q ss_conf 23320005778889998640001135540378862268852178899999999999987649840013211354477211
Q gi|254780874|r 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 (357)
Q Consensus 83 l~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~ 162 (357)
+..+...++.++++|+..+||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+
T Consensus 78 ~~~l~~~l~~l~~ele~~lL~~~~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~ae~~g~k~evi~~~~~~~~Gik~ 157 (354)
T 3d5a_X 78 REALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSK 157 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE
T ss_conf 99998778889999999717798655547179985167872499999999999999997475047861246655677505
Q ss_pred EEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 13777503111210002465026761254567851101688885303343322245434799985288875200063212
Q gi|254780874|r 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 (357)
Q Consensus 163 v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~s 242 (357)
|+|.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|+++++++.|+++||+|||||||||||||||||+|
T Consensus 158 ~~~~i~G~~ayg~Lk~E~GvHRv~Rip~~e~~~r~hTs~a~V~v~p~~~~~~~~i~~~dl~i~t~RssG~GGQ~VNkt~s 237 (354)
T 3d5a_X 158 VVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDS 237 (354)
T ss_dssp EEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCC
T ss_pred EEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCC
T ss_conf 99999826630011440574268856988778855778889999455555545667103225643457887666565454
Q ss_pred EEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEC
Q ss_conf 1588964984488-843654135899999999999999999999999987446522467423822104489981124321
Q gi|254780874|r 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI 321 (357)
Q Consensus 243 avri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~ 321 (357)
||||||+||||+| ||+|||||+||++||++|++|||+++.+++.++.++.|++|||+|+||+|||||||||+|||||||
T Consensus 238 AVRitH~ptGi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~rV~DhR~ 317 (354)
T 3d5a_X 238 AVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRI 317 (354)
T ss_dssp EEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETTT
T ss_pred EEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf 47999706766887133022899999999999999999999999999998887337244667884670069875133044
Q ss_pred CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 644178778728866999999999999999874059
Q gi|254780874|r 322 NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 (357)
Q Consensus 322 ~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e 357 (357)
|++++|+++||+|+||+||++|+.|+++++|+++.|
T Consensus 318 ~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~l~~~~e 353 (354)
T 3d5a_X 318 GFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE 353 (354)
T ss_dssp TEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 886368057758873999999999999999997518