HHsearch results for GI: 254780874 and protein with PDBid: 3d5a_X

>3d5a_X RF1, peptide chain release factor 1; ribosome, coiled coil, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding; 3.21A {Thermus thermophilus HB27} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=100.00  E-value=0  Score=949.28  Aligned_cols=348  Identities=45%  Similarity=0.718  Sum_probs=338.1

Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Q ss_conf             89899999999999998538531579---999999998799999999999999998999999972037853566543322
Q gi|254780874|r    6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE   82 (357)
Q Consensus         6 ~~kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeE   82 (357)
                      -+||+.+..|+.+|+.+|++|+||+|   +++++|+++.|+++++.++.|.+...++.++.+|+    +|+++.+++++|
T Consensus         2 ~dKLe~i~~r~~eLe~~l~dp~~w~D~~ka~~l~ke~~~L~~~v~~~~~l~~~~~dl~el~el~----~D~e~~ela~ee   77 (354)
T 3d5a_X            2 LDKLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAKAE   77 (354)
T ss_dssp             HHHHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST----TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCHHHHHHHHHH
T ss_conf             1579999999999999861983223999999999999999999999999999999899999885----281107899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE
Q ss_conf             23320005778889998640001135540378862268852178899999999999987649840013211354477211
Q gi|254780874|r   83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE  162 (357)
Q Consensus        83 l~~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~  162 (357)
                      +..+...++.++++|+..+||+||+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|+.||||+
T Consensus        78 ~~~l~~~l~~l~~ele~~lL~~~~~D~~nailEIrAGaGG~EA~dwA~~L~RMY~r~ae~~g~k~evi~~~~~~~~Gik~  157 (354)
T 3d5a_X           78 REALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFAEEMGFETEVLDSHPTDLGGFSK  157 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCCCCCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCE
T ss_conf             99998778889999999717798655547179985167872499999999999999997475047861246655677505


Q ss_pred             EEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCC
Q ss_conf             13777503111210002465026761254567851101688885303343322245434799985288875200063212
Q gi|254780874|r  163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS  242 (357)
Q Consensus       163 v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~s  242 (357)
                      |+|.|+|++|||+||+|+|||||||||||+++||+|||||+|+|+|+++++++.|+++||+|||||||||||||||||+|
T Consensus       158 ~~~~i~G~~ayg~Lk~E~GvHRv~Rip~~e~~~r~hTs~a~V~v~p~~~~~~~~i~~~dl~i~t~RssG~GGQ~VNkt~s  237 (354)
T 3d5a_X          158 VVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTSTATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDS  237 (354)
T ss_dssp             EEEEEESTTHHHHHGGGCSEEEEEECCSSCSSCCCEEEEEEEEEEECCCCCCCCCCGGGEEEEEECCCSCCHHHHHHCCC
T ss_pred             EEEEEECCCCCEEEEEECCCEEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCHHHEEEEEECCCCCCCCCCCCCC
T ss_conf             99999826630011440574268856988778855778889999455555545667103225643457887666565454


Q ss_pred             EEEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEEC
Q ss_conf             1588964984488-843654135899999999999999999999999987446522467423822104489981124321
Q gi|254780874|r  243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI  321 (357)
Q Consensus       243 avri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~  321 (357)
                      ||||||+||||+| ||+|||||+||++||++|++|||+++.+++.++.++.|++|||+|+||+|||||||||+|||||||
T Consensus       238 AVRitH~ptGi~v~~q~eRSQ~~Nk~~A~~~L~~kL~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~rV~DhR~  317 (354)
T 3d5a_X          238 AVRVVHLPTGIMVTCQDSRSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDHRI  317 (354)
T ss_dssp             EEEEEETTTTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGGSCSSEEEETTTTEEEETTT
T ss_pred             EEEEEEECCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCC
T ss_conf             47999706766887133022899999999999999999999999999998887337244667884670069875133044


Q ss_pred             CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             644178778728866999999999999999874059
Q gi|254780874|r  322 NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE  357 (357)
Q Consensus       322 ~~~~~~~~~~l~G~l~~~i~~~~~~~~~~~l~~~~e  357 (357)
                      |++++|+++||+|+||+||++|+.|+++++|+++.|
T Consensus       318 ~~~~~~~~~vl~G~ld~~i~~~~~~~~~~~l~~~~e  353 (354)
T 3d5a_X          318 GFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE  353 (354)
T ss_dssp             TEEECCHHHHTTTCCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCEECCHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             886368057758873999999999999999997518