Query gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 357
No_of_seqs 251 out of 3008
Neff 6.5
Searched_HMMs 13730
Date Wed Jun 1 11:12:27 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780874.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1gqea_ e.38.1.1 (A:) Polypept 100.0 0 0 933.1 33.2 331 8-346 23-360 (362)
2 d2b3tb1 e.38.1.1 (B:7-354) Pep 100.0 0 0 938.7 17.6 339 11-353 1-344 (344)
3 d1rq0a_ e.38.1.1 (A:) Peptide 100.0 0 0 894.4 27.4 331 12-356 1-333 (333)
4 d1j26a_ d.50.4.1 (A:) Ict1 pro 99.6 7.8E-16 5.7E-20 131.6 7.8 70 210-279 10-105 (112)
5 d1gqea_ e.38.1.1 (A:) Polypept 94.2 0.2 1.5E-05 27.6 10.3 61 5-66 4-81 (362)
6 d1ivsa1 a.2.7.3 (A:797-862) Va 76.4 2.3 0.00017 20.0 5.6 51 6-56 10-62 (66)
7 d2vqei1 d.14.1.1 (I:2-128) Rib 51.2 3.4 0.00025 18.8 1.8 29 192-222 4-32 (127)
8 d2gy9i1 d.14.1.1 (I:4-129) Rib 46.6 4.1 0.0003 18.2 1.7 30 192-223 3-32 (126)
9 d1n4ka2 b.42.6.1 (A:236-435) I 43.1 6.5 0.00047 16.7 2.2 17 239-255 148-164 (200)
10 d2pc6a2 d.58.18.6 (A:1-77) Ace 41.4 6.2 0.00045 16.9 1.9 32 140-171 23-54 (77)
11 d2fgca2 d.58.18.6 (A:27-104) A 40.4 6.4 0.00047 16.8 1.9 40 131-171 16-55 (78)
12 d1rpxa_ c.1.2.2 (A:) D-ribulos 39.7 8.3 0.0006 16.0 2.3 59 112-175 145-213 (230)
13 d2f1fa1 d.58.18.6 (A:2-77) Ace 38.3 8 0.00058 16.1 2.1 39 132-171 15-53 (76)
14 d1seta1 a.2.7.1 (A:1-110) Sery 38.0 10 0.00076 15.3 6.3 31 80-110 77-109 (110)
15 d1lrza1 a.2.7.4 (A:245-309) Me 35.3 11 0.00083 15.0 5.3 59 6-67 2-61 (65)
16 d1m0da_ c.52.1.17 (A:) Endonuc 31.2 8.3 0.00061 16.0 1.2 13 136-148 93-105 (129)
17 d1tqja_ c.1.2.2 (A:) D-ribulos 30.7 11 0.0008 15.1 1.8 58 112-174 137-204 (221)
18 d1ws8a_ b.6.1.1 (A:) Mavicyani 28.9 9.8 0.00071 15.5 1.3 33 136-191 21-53 (104)
19 d1vqod1 d.77.1.1 (D:10-174) Ri 27.9 15 0.0011 14.1 2.9 72 154-229 56-128 (165)
20 d1t9ha2 c.37.1.8 (A:68-298) Pr 26.3 4.6 0.00034 17.8 -0.8 99 99-207 32-146 (231)
21 d1sqda2 d.32.1.3 (A:181-410) 4 23.0 18 0.0013 13.5 2.6 40 157-196 20-60 (230)
22 d1trba2 c.3.1.5 (A:119-244) Th 20.1 20 0.0014 13.3 1.4 22 108-133 26-47 (126)
No 1
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=933.05 Aligned_cols=331 Identities=34% Similarity=0.549 Sum_probs=307.6
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 899999999999998538531579---99999999879999999999999999899999997203785356654332223
Q gi|254780874|r 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 (357)
Q Consensus 8 kL~~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~ 84 (357)
.++.++.|+.+|+.+|++|+||+| +++++|+++.|+++++.|+.|.+...++.++.+++.+ ++|+++.++++.++.
T Consensus 23 Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~Ela~e-e~deel~~e~~~~l~ 101 (362)
T d1gqea_ 23 DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVE-ADDEETFNEAVAELD 101 (362)
T ss_dssp THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_conf 9798999999999986397144499999999999999999999999999999988877877641-105888888999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEE
Q ss_conf 32000577888999864000113554037886226885217889999999999998764984001321135447721113
Q gi|254780874|r 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 (357)
Q Consensus 85 ~l~~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~ 164 (357)
.+...+++ |+..+||+||+|.+||||||||||||+||||||+||||||+|||+++||+++++++++|++||||+|+
T Consensus 102 ~l~~~l~~----le~~ll~~~~~D~~nailEIrAGaGG~EA~dfA~~L~RMY~r~ae~~gwk~eiid~~~~e~gG~K~v~ 177 (362)
T d1gqea_ 102 ALEEKLAQ----LEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVT 177 (362)
T ss_dssp HHHHHHHH----HGGGGGCCSTTTTSCEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECSSSSEEEEE
T ss_pred HHHHHHHH----HHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEE
T ss_conf 98622467----78752136754545437999825760668899999999999999975985899414567766546999
Q ss_pred EEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECC-CCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCE
Q ss_conf 7775031112100024650267612545678511016888853033-433222454347999852888752000632121
Q gi|254780874|r 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 (357)
Q Consensus 165 ~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~-~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~sa 243 (357)
|.|+|+||||+||+|+|||||||||||+++||||||||+|+|+|++ ++++++|+|+||+|||||||||||||||||+||
T Consensus 178 ~~I~G~~ayg~Lk~EsGvHRvqRvp~~es~gr~hTS~a~V~v~P~~~~~~~~~i~~~dl~i~~~rs~g~GGQ~vN~t~sa 257 (362)
T d1gqea_ 178 IKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESA 257 (362)
T ss_dssp EEEESTTHHHHHGGGCEEEEEEEECTTSSSCCEEEEEEEEEEEECCBTTBCCCCCGGGEEEEEECCCCSSCCSTTSSCCE
T ss_pred EEEECCCHHHHHHHHCCCEEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCEECCHHHEEEEEEECCCCCCCCHHHHHCE
T ss_conf 99977668899987237504888404677734799877889962478763111176782799752699886512033141
Q ss_pred EEEEECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHCCCCCCCCCEEECCCCCCCEEEEE
Q ss_conf 588964984488-8436541358999999999999999999999999874--4652246742382210448998112432
Q gi|254780874|r 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGRITDHR 320 (357)
Q Consensus 244 vri~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~--r~~~~g~~~rs~~iRtY~~~~~rv~DhR 320 (357)
|||||+||||+| ||+|||||+||++||++|++|||+++.+++.++.... ++.++| ||+||||||||||||||||
T Consensus 258 vri~H~ptgi~v~~q~ersq~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~iRtY~~~~~rv~DhR 334 (362)
T d1gqea_ 258 VRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIG---WGSQIRSYVLDDSRIKDLR 334 (362)
T ss_dssp EEEEETTTCCEEEECSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSTTCCCCC---SCSEEEEEEGGGTEEEETT
T ss_pred EEEEECCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CCCCCCCCCCCCCCCCCCC
T ss_conf 6887447336777642210147899999999999999999999999998874231275---7698467658998150005
Q ss_pred CCCEECCHHHHHCCCHHHHHHHHHHH
Q ss_conf 16441787787288669999999999
Q gi|254780874|r 321 INLTLYKLEYVLQGYIDDIINPLLTA 346 (357)
Q Consensus 321 ~~~~~~~~~~~l~G~l~~~i~~~~~~ 346 (357)
||++++|+++||+|+||+||++|++.
T Consensus 335 ~~~~~~~~~~vl~G~ld~~i~a~l~~ 360 (362)
T d1gqea_ 335 TGVETRNTQAVLDGSLDQFIEASLKA 360 (362)
T ss_dssp TCCEESCHHHHHTTCCHHHHHHHHHT
T ss_pred CCCEECCHHHHHCCCHHHHHHHHHHC
T ss_conf 39725784687588779999999877
No 2
>d2b3tb1 e.38.1.1 (B:7-354) Peptide chain release factor 1, RF1 {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=0 Score=938.66 Aligned_cols=339 Identities=50% Similarity=0.851 Sum_probs=327.9
Q ss_pred HHHHHHHHHHHHHCCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Q ss_conf 999999999998538531579---99999999879999999999999999899999997203785356654332223320
Q gi|254780874|r 11 DLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIE 87 (357)
Q Consensus 11 ~l~~rl~ELE~~Lsdp~~w~d---~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~~l~ 87 (357)
.|+.||+||+.+|++|++|+| +++++||++.|+++++.|+.|.+..+++.++.+|+. |+++.++|++|+..+.
T Consensus 1 Ai~eR~eELe~~LsdPd~w~D~~kaqkLsKE~s~L~~iV~~~~~l~~~~~dleel~eL~e----D~E~~ela~eEl~el~ 76 (344)
T d2b3tb1 1 ALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQMMLD----DPEMREMAQDELREAK 76 (344)
T ss_dssp HHHHHHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHHHHHHTTCC-------------------------------
T ss_pred CHHHHHHHHHHHHHCCCCHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHH
T ss_conf 968999999998609850009999999999999999999999999999998999998827----9524999987666655
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEE
Q ss_conf 00577888999864000113554037886226885217889999999999998764984001321135447721113777
Q gi|254780874|r 88 KEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 (357)
Q Consensus 88 ~~l~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I 167 (357)
..+++++.+++..|+|++|+|.+||||||||||||+||||||+||||||+|||+++||++++++.++|++||||+|+|.|
T Consensus 77 ~~l~~le~~l~~~ll~~~~~D~~~aileI~aGaGG~EA~dwA~~L~rMY~r~ae~~g~k~evl~~~~ge~~Gik~~~~~i 156 (344)
T d2b3tb1 77 EKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKI 156 (344)
T ss_dssp --------CCCCCCCSCCSGGGSCEEEEEEECSSSHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSEEEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEEEEEE
T ss_conf 45567788889873144223444448999516665789999999999999999873986034223555678602799999
Q ss_pred ECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCC-CCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 503111210002465026761254567851101688885303343-3222454347999852888752000632121588
Q gi|254780874|r 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 (357)
Q Consensus 168 ~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~-~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri 246 (357)
+|++|||+||+|+|||||||||||+++||+|||||+|+|+|++++ ..++|+|+||+|||||||||||||||||+|||||
T Consensus 157 ~G~~ay~~lk~E~GvHRvqRip~~~~~~r~hts~~~v~v~p~~~~~~~~~i~~~dl~i~~~rssg~GGQ~vnkt~sAVRi 236 (344)
T d2b3tb1 157 SGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSAIRI 236 (344)
T ss_dssp CSSSCHHHHGGGCEEEEEEECCTTCSSCCCEEEEEEEECCBCCCTTTCCCCCSSSEEEEECCSSCCCTTTCCCSSEEEEE
T ss_pred ECCCCCCEEEEEECCEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCHHHHHCEEEE
T ss_conf 75765523467522247986046531343143114675421245332344275644478842787554401014312489
Q ss_pred EECCCCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEE
Q ss_conf 964984488-8436541358999999999999999999999999874465224674238221044899811243216441
Q gi|254780874|r 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 (357)
Q Consensus 247 ~H~ptgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~ 325 (357)
||+||||+| ||+|||||+||++||++|++|||+.+++++.++..+.||+|||+|+||+|||||||||+||||||||+++
T Consensus 237 ~H~ptGi~v~~q~eRSq~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~~v~DhR~~~~~ 316 (344)
T d2b3tb1 237 THLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTL 316 (344)
T ss_dssp EETTTCCEEEEEESSCHHHHHHHHHHHHHHHHTTTTTTSCC------CCC-------CCEEEEEETTTTEEEEGGGTEEE
T ss_pred EECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCEECCCCEE
T ss_conf 98577638874577761689999999999999999999999999998760040012438447441598864201458866
Q ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 7877872886699999999999999987
Q gi|254780874|r 326 YKLEYVLQGYIDDIINPLLTAHQAKMIG 353 (357)
Q Consensus 326 ~~~~~~l~G~l~~~i~~~~~~~~~~~l~ 353 (357)
+|++.||+|+||+||++|+.|+++++|+
T Consensus 317 ~~~~~vl~G~ld~~i~~~~~~~~~~~l~ 344 (344)
T d2b3tb1 317 YRLDEVMEGKLDMLIEPIIQEHQADQLA 344 (344)
T ss_dssp SCHHHHHHTCTHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 7834764987499999999999998529
No 3
>d1rq0a_ e.38.1.1 (A:) Peptide chain release factor 1, RF1 {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=0 Score=894.43 Aligned_cols=331 Identities=45% Similarity=0.729 Sum_probs=303.1
Q ss_pred HHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999998538531579-99999999879999999999999999899999997203785356654332223320005
Q gi|254780874|r 12 LKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEI 90 (357)
Q Consensus 12 l~~rl~ELE~~Lsdp~~w~d-~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~e~e~D~El~elAeeEl~~l~~~l 90 (357)
|++|+++|+.+|++|++|+| ++++++++++|+++++.++.++ ++.++.+++.++ .|. +.|+..+..++
T Consensus 1 L~~r~~eLe~~l~dPd~~~d~~~~lske~~~L~~i~~l~~~~~----d~~el~el~~ee-~d~------e~el~~l~~~l 69 (333)
T d1rq0a_ 1 MKEKKKEIEKLLARPDLTPEQMKNYGMEYAKIEEIENITNRIK----ETQEFIELLREE-GEN------ELEIEKYEKEL 69 (333)
T ss_dssp CTTTTTHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHTTTTTT-TTC------CSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCC-CCC------HHHHHHHHHHH
T ss_conf 9589999999983899899999999999999999999999999----899999998738-875------89999999889
Q ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECC
Q ss_conf 77888999864000113554037886226885217889999999999998764984001321135447721113777503
Q gi|254780874|r 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 (357)
Q Consensus 91 ~~le~eL~~~LLpsde~D~~nailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~ 170 (357)
+.++.+|.+ |.+|+|++||||||||||||+||||||+||||||+|||+++||+++++++++|+.||||+|+|.|+|+
T Consensus 70 ~~l~~el~~---l~~p~D~~nailEIrAGaGG~EA~~fA~~L~RMY~r~Ae~kgwk~eil~~~~~e~gGiK~v~~~I~G~ 146 (333)
T d1rq0a_ 70 DQLYQELLF---LLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWNLEVAEIHETDLGGIREVVFFVKGK 146 (333)
T ss_dssp HHHHHHHHH---HHSCSSCSEEEEEEEECSSTHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEECTTSCEEEEEEEEEST
T ss_pred HHHHHHHHC---CCCHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHEEECCC
T ss_conf 999998633---24200134627999447871789999999999999998660345321223332333311222000022
Q ss_pred CHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEEECC
Q ss_conf 11121000246502676125456785110168888530334332224543479998528887520006321215889649
Q gi|254780874|r 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 (357)
Q Consensus 171 ~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~H~p 250 (357)
+|||+||+|+|||||||||||+++||||||||+|+|+|++++++++|+|+||+|||||||||||||||||+|||||||+|
T Consensus 147 ~ayg~Lk~E~GvHRv~Rvp~~~~~~r~hTs~~~V~v~p~~~~~~v~i~~~dl~i~~~RssG~GGQ~VNkt~sAVRitH~P 226 (333)
T d1rq0a_ 147 NAYGILKYESGVHRVQRVPVTESGGRIHTSTATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLP 226 (333)
T ss_dssp THHHHHGGGCEEEEEEECCTTSCSCCCEEEEEEEEEEECCCGGGSCCCGGGEEEEEECCCC----CCSSSSEEEEEEETT
T ss_pred CCHHHHCCCCCCEEEEEECCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHEEEEEECC
T ss_conf 21344210011026887224577775577789999741234432210034336885137753222121131003799858
Q ss_pred CCEEE-EECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCCCCCCEEEEECCCEECCHH
Q ss_conf 84488-84365413589999999999999999999999998744652246742382210448998112432164417877
Q gi|254780874|r 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 (357)
Q Consensus 251 tgi~v-~~~eRsQ~~Nk~~A~~~L~~~l~~~~~~~~~~~~~~~r~~~~g~~~rs~~iRtY~~~~~rv~DhR~~~~~~~~~ 329 (357)
|||+| ||+|||||+||++||++|++|||+++.+++.++..+.|++|||+|+||+|||||||||+||||||||++++|++
T Consensus 227 TGi~v~~q~eRSQ~~Nk~~A~~~L~~kl~~~~~~~~~~~~~~~r~~~~~~~~r~~~iRtY~~p~~rV~DhR~~~~~~~l~ 306 (333)
T d1rq0a_ 227 TGIVVSCQNERSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRLQ 306 (333)
T ss_dssp TCCEEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC----------CCCEEEEEETTTTEEEETTTTEEESCHH
T ss_pred CCCEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCHHHCCCCEECCHH
T ss_conf 86188711155617899999999999999999998789999988603214446788642438998616641498546845
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 872886699999999999999987405
Q gi|254780874|r 330 YVLQGYIDDIINPLLTAHQAKMIGSAS 356 (357)
Q Consensus 330 ~~l~G~l~~~i~~~~~~~~~~~l~~~~ 356 (357)
+||+|+||+||++|+.+...++|+++.
T Consensus 307 ~vl~G~ld~~i~~~~~~~~~~~l~~~l 333 (333)
T d1rq0a_ 307 EILDGDLDEIISKLIEHDIENNLEEVL 333 (333)
T ss_dssp HHHTTCCHHHHHHHHHHHHTTTHHHHC
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf 775887399999999999999999639
No 4
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.61 E-value=7.8e-16 Score=131.57 Aligned_cols=70 Identities=30% Similarity=0.502 Sum_probs=58.5
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEE-E------CC------------------CCEEEEEC-CCCCH
Q ss_conf 34332224543479998528887520006321215889-6------49------------------84488843-65413
Q gi|254780874|r 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT-H------IP------------------TGIMVTSS-EKSQH 263 (357)
Q Consensus 210 ~~~~~~~i~~~dl~i~~~rssG~GGQ~vN~t~savri~-H------~p------------------tgi~v~~~-eRsQ~ 263 (357)
..+....|+.++|++.+.|||||||||||||+|+|.|+ | +| ..|+|.|+ .|||+
T Consensus 10 ~~~~~~~Ip~~~i~~~f~RSsGPGGQ~VNKv~TkV~Lr~~v~~s~~l~~~~~~~l~~~~~~~i~~~g~l~I~s~~~RsQ~ 89 (112)
T d1j26a_ 10 AKQASSYIPLDRLSISYCRSSGPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQF 89 (112)
T ss_dssp CCSSCCCCCTTTSEEEEECCCCSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHH
T ss_pred HHHHCCCCCHHHEEEEEEECCCCCCCCCCEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHH
T ss_conf 43513724878948998874799998402013479999961104457989999998876502257973999976657999
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 5899999999999999
Q gi|254780874|r 264 QNRLRAMKVLRARLYD 279 (357)
Q Consensus 264 ~Nk~~A~~~L~~~l~~ 279 (357)
+||+.|+..|...|.+
T Consensus 90 ~Nr~~a~~kL~~li~~ 105 (112)
T d1j26a_ 90 RNLAECLQKIRDMIAE 105 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 9999999999999999
No 5
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=94.23 E-value=0.2 Score=27.63 Aligned_cols=61 Identities=16% Similarity=0.169 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 689899999999999998538531-5799999----------------9999879999999999999999899999997
Q gi|254780874|r 5 SHKQICDLKNRFAEIELRMSESPS-VDAYIKL----------------TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 (357)
Q Consensus 5 ~~~kL~~l~~rl~ELE~~Lsdp~~-w~d~~kl----------------sKe~s~L~~iv~~~~~~~~~~~ei~el~eLl 66 (357)
...+|.+|..++..|...+ +.+. -..+.++ .+..++++.+...++.|..+...+.++.+++
T Consensus 4 l~~~i~eL~~rl~~Lr~~f-Dld~kk~Rl~ELE~~lsdP~fW~D~~kAqkl~KE~s~L~~iVe~~~~l~~~leDl~eL~ 81 (362)
T d1gqea_ 4 VNNRIQDLTERSDVLRGYL-DYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLL 81 (362)
T ss_dssp HHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999999999999999776-97989999999999863971444999999999999999999999999999999888778
No 6
>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=76.40 E-value=2.3 Score=19.98 Aligned_cols=51 Identities=8% Similarity=0.043 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHH-H-HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999999999853853157999-9-9999987999999999999999
Q gi|254780874|r 6 HKQICDLKNRFAEIELRMSESPSVDAYI-K-LTEEYAAISPIISKISIYDQKK 56 (357)
Q Consensus 6 ~~kL~~l~~rl~ELE~~Lsdp~~w~d~~-k-lsKe~s~L~~iv~~~~~~~~~~ 56 (357)
.++|..+...+.-++..|+.|+|++.+- . ..++...|......+..+...+
T Consensus 10 ~K~l~kl~~~i~~~~~kL~N~~F~~kAP~~Vv~~~k~kl~~~~~~~~~l~~~l 62 (66)
T d1ivsa1 10 EKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERIREAL 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHTSTTHHHHSCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98999999999999988878078776989999999999999999999999999
No 7
>d2vqei1 d.14.1.1 (I:2-128) Ribosomal protein S9 {Thermus thermophilus [TaxId: 274]}
Probab=51.17 E-value=3.4 Score=18.77 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=18.9
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEE
Q ss_conf 5678511016888853033433222454347
Q gi|254780874|r 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 (357)
Q Consensus 192 es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl 222 (357)
=+.|||.||.|.|.+.|-- -.|.||..++
T Consensus 4 y~~GrRKtaiArv~l~~G~--G~I~IN~~~~ 32 (127)
T d2vqei1 4 YGTGRRKEAVARVFLRPGN--GKVTVNGQDF 32 (127)
T ss_dssp EECCEETTEEEEEEEEESS--CCEEESSSBH
T ss_pred EEECCCCCEEEEEEEECCC--CEEEEECHHH
T ss_conf 7335460589999998388--4499804137
No 8
>d2gy9i1 d.14.1.1 (I:4-129) Ribosomal protein S9 {Escherichia coli [TaxId: 562]}
Probab=46.62 E-value=4.1 Score=18.19 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=20.0
Q ss_pred CCCCCCCEEEEEEEEEECCCCCCCCCCCCEEE
Q ss_conf 56785110168888530334332224543479
Q gi|254780874|r 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 (357)
Q Consensus 192 es~gR~hTS~a~V~V~P~~~~~~~~i~~~dl~ 223 (357)
-+-|||.||.|.|.+.|-.- .|.||..++.
T Consensus 3 y~tGrRKtaiArv~l~~G~G--~I~IN~~~~~ 32 (126)
T d2gy9i1 3 YGTGRRKSSAARVFIKPGNG--KIVINQRSLE 32 (126)
T ss_dssp EECCEETTEEEEEEEEESSS--CEEETTEEHH
T ss_pred CCCCCCCCEEEEEEEEECCC--EEEECCHHHH
T ss_conf 03162515899999992676--7978704575
No 9
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=43.06 E-value=6.5 Score=16.73 Aligned_cols=17 Identities=35% Similarity=0.456 Sum_probs=8.7
Q ss_pred CCCCEEEEEECCCCEEE
Q ss_conf 32121588964984488
Q gi|254780874|r 239 TTDSAVRITHIPTGIMV 255 (357)
Q Consensus 239 ~t~savri~H~ptgi~v 255 (357)
..+|=|||.|+-||.=|
T Consensus 148 ~~~Syvrl~Hv~T~~Wl 164 (200)
T d1n4ka2 148 PRNSYVRLRHLCTNTWV 164 (200)
T ss_dssp ----CBEEEEGGGTEEE
T ss_pred CCCCEEEEEEECCCCEE
T ss_conf 66768999981579578
No 10
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}
Probab=41.37 E-value=6.2 Score=16.91 Aligned_cols=32 Identities=19% Similarity=0.319 Sum_probs=29.1
Q ss_pred HHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 87649840013211354477211137775031
Q gi|254780874|r 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 (357)
Q Consensus 140 ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~ 171 (357)
..++||.++-+...+++..|+...++.+.|+.
T Consensus 23 F~rRg~NI~Sltv~~te~~~iSRmtivv~~~~ 54 (77)
T d2pc6a2 23 FSARGYNIESLSVAPTEDPTLSRMTLVTNGPD 54 (77)
T ss_dssp HHHHTCCCCEEEEEECSSTTEEEEEEEEEECH
T ss_pred HHCCCCCEEEEEEECCCCCCEEEEEEEEECCH
T ss_conf 86068546889974258998389999997788
No 11
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}
Probab=40.44 E-value=6.4 Score=16.77 Aligned_cols=40 Identities=13% Similarity=0.298 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 99999999987649840013211354477211137775031
Q gi|254780874|r 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 (357)
Q Consensus 131 ~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~ 171 (357)
.|.|+=.- ..++||.++-+...+++..|+...|+.+.|+.
T Consensus 16 vL~Ri~~l-F~rRg~NI~SL~v~~te~~~iSR~tivv~g~~ 55 (78)
T d2fgca2 16 VMRKVANL-FARRGFNISSITVGESETPGLSRLVIMVKGDD 55 (78)
T ss_dssp HHHHHHHH-HHTTTCEEEEEEEEECSSTTEEEEEEEEEECT
T ss_pred HHHHHHHH-HHHCCCCEEEEEEEECCCCCEEEEEEEEECCH
T ss_conf 99999999-86178554788982137998489999998498
No 12
>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=39.74 E-value=8.3 Score=15.98 Aligned_cols=59 Identities=22% Similarity=0.239 Sum_probs=37.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE----------EEEEEECCCHHHH
Q ss_conf 378862268852178899999999999987649840013211354477211----------1377750311121
Q gi|254780874|r 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE----------IVATISGRGVFSR 175 (357)
Q Consensus 112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~----------v~~~I~G~~aYg~ 175 (357)
-+|.|.||.||..-..-+-.-.+-..++...+++++.|. =.||++. |-.-|.|.+.|+.
T Consensus 145 llM~V~PGf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~-----vDGGIn~~~i~~l~~~Gad~~V~GS~if~~ 213 (230)
T d1rpxa_ 145 LIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIE-----VDGGVGPKNAYKVIEAGANALVAGSAVFGA 213 (230)
T ss_dssp EEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEE-----EESSCCTTTHHHHHHHTCCEEEESHHHHTS
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEE-----EECCCCHHHHHHHHHCCCCEEEECHHHHCC
T ss_conf 998736886420013566899999877777537734899-----987768999999997699999988698789
No 13
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}
Probab=38.29 E-value=8 Score=16.10 Aligned_cols=39 Identities=21% Similarity=0.287 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCC
Q ss_conf 9999999987649840013211354477211137775031
Q gi|254780874|r 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 (357)
Q Consensus 132 L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~ 171 (357)
|.|+=.- ..++||.++-+...|++..|+...|+.+.|+.
T Consensus 15 L~Risgl-F~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~ 53 (76)
T d2f1fa1 15 LSRVIGL-FSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE 53 (76)
T ss_dssp HHHHHHH-HHTTTCCCSEEEEEECSCSSEEEEEEEEESCH
T ss_pred HHHHHHH-HHHCCCCEEEEEECCCCCCCEEEEEEEEECCH
T ss_conf 9999999-87268556788970457998129999997888
No 14
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=37.96 E-value=10 Score=15.26 Aligned_cols=31 Identities=23% Similarity=0.238 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCC
Q ss_conf 32223320005778889998--64000113554
Q gi|254780874|r 80 QIEVLAIEKEIRELENEINY--LLLPKDTDDDK 110 (357)
Q Consensus 80 eeEl~~l~~~l~~le~eL~~--~LLpsde~D~~ 110 (357)
..++..++..+..++.++.. +.+|+-|+++-
T Consensus 77 k~~i~~le~~~~~~~~~l~~~ll~iPNi~~~~V 109 (110)
T d1seta1 77 GEEAKRLEEALREKEARLEALLLQVPLPPWPGA 109 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 999999999999999999999980999998568
No 15
>d1lrza1 a.2.7.4 (A:245-309) Methicillin resistance protein FemA probable tRNA-binding arm {Staphylococcus aureus [TaxId: 1280]}
Probab=35.32 E-value=11 Score=14.98 Aligned_cols=59 Identities=5% Similarity=0.065 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8989999999999999853853-1579999999998799999999999999998999999972
Q gi|254780874|r 6 HKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 (357)
Q Consensus 6 ~~kL~~l~~rl~ELE~~Lsdp~-~w~d~~klsKe~s~L~~iv~~~~~~~~~~~ei~el~eLl~ 67 (357)
.++|..|..+...|+..|..-. .......-.|-...+..+...++.+.. .+.++.+++.
T Consensus 2 ~eYl~~L~~~~~~L~~~i~k~~~~leknP~skK~~nk~~el~~Q~~s~~~---ki~Ea~~li~ 61 (65)
T d1lrza1 2 DEYIKELNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQ---KIEEGKRLQE 61 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_conf 57789889999999999999999998788957888788889999999999---9999999998
No 16
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction resolvase) {Bacteriophage T7 [TaxId: 10760]}
Probab=31.23 E-value=8.3 Score=15.97 Aligned_cols=13 Identities=15% Similarity=0.307 Sum_probs=10.3
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 9999876498400
Q gi|254780874|r 136 YERYAALRKWKVE 148 (357)
Q Consensus 136 Y~r~ae~~gwk~e 148 (357)
|-.||+++||.+-
T Consensus 93 Ya~WCek~gf~~~ 105 (129)
T d1m0da_ 93 YGEFCEKHGIKFA 105 (129)
T ss_dssp HHHHHHHHTCCEE
T ss_pred HHHHHHHCCCCCC
T ss_conf 9999987399745
No 17
>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}
Probab=30.68 E-value=11 Score=15.11 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=36.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCE----------EEEEEECCCHHH
Q ss_conf 378862268852178899999999999987649840013211354477211----------137775031112
Q gi|254780874|r 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE----------IVATISGRGVFS 174 (357)
Q Consensus 112 ailEI~aGaGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~----------v~~~I~G~~aYg 174 (357)
-+|.|.||.||..-..-+-.-.+...++...+++++.|. =.||++. |..-|.|.+.|+
T Consensus 137 lvM~V~pG~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~-----VDGGIn~~~i~~l~~~Gad~~V~GS~if~ 204 (221)
T d1tqja_ 137 LIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIE-----VDGGLKPNNTWQVLEAGANAIVAGSAVFN 204 (221)
T ss_dssp EEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEE-----EESSCCTTTTHHHHHHTCCEEEESHHHHT
T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEE-----EECCCCHHHHHHHHHCCCCEEEECHHHHC
T ss_conf 999864788874220015799999886542036533799-----97776889899999869999998958868
No 18
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]}
Probab=28.92 E-value=9.8 Score=15.47 Aligned_cols=33 Identities=24% Similarity=0.542 Sum_probs=22.9
Q ss_pred HHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCC
Q ss_conf 99998764984001321135447721113777503111210002465026761254
Q gi|254780874|r 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 (357)
Q Consensus 136 Y~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~ 191 (357)
|..||.++.|.+ ||. + .++++.|.|-|..++..
T Consensus 21 Y~~Wa~~~~f~v-------GD~-----l-----------~F~y~~~~h~V~~v~~~ 53 (104)
T d1ws8a_ 21 YAKWASSNKFHV-------GDS-----L-----------LFNYNNKFHNVLQVDQE 53 (104)
T ss_dssp HHHHHHTSCBCT-------TCE-----E-----------EEECCTTTCCEEEECHH
T ss_pred HHHHHHCCCCCC-------CCE-----E-----------EEEECCCCCEEEEECHH
T ss_conf 778862883879-------999-----9-----------99978998268997988
No 19
>d1vqod1 d.77.1.1 (D:10-174) Ribosomal protein L5 {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=27.89 E-value=15 Score=14.13 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=43.8
Q ss_pred CCCCCCCCEEEEEEECCCHHHHHHCCCCCEEEEEECCCCCCCCCCEEEEEEEEEECCC-CCCCCCCCCEEEEEEECC
Q ss_conf 3544772111377750311121000246502676125456785110168888530334-332224543479998528
Q gi|254780874|r 154 DNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRA 229 (357)
Q Consensus 154 ~ge~aGik~v~~~I~G~~aYg~Lk~E~GvHRvqRip~~es~gR~hTS~a~V~V~P~~~-~~~~~i~~~dl~i~~~rs 229 (357)
.|+--|+| +.+.|+.+|-+|.-=--+ ...++..||.+|-..-...-..++|+++ |....|.-=|+-|.|-|.
T Consensus 56 kg~piG~k---VTLRg~~m~~FL~rll~~-~~~~~k~FD~~GN~sfGi~e~~~FPei~~d~~~~i~Gm~Itivt~~~ 128 (165)
T d1vqod1 56 EGDPIGAK---VTLRDEMAEEFLQTALPL-AELATSQFDDTGNFSFGVEEHTEFPSQEYDPSIGIYGLDVTVNLVRP 128 (165)
T ss_dssp SSSEEEEE---EEECTHHHHHHHHTTGGG-SCCCSTTBCSSSCEEEC--------------------CEEEEEEECG
T ss_pred CCCEEEEE---EEEECHHHHHHHHHHHCC-CCCCCCCCCCCEEEEECCHHHEECCCCCCCCCCCCCCCEEEEEECCC
T ss_conf 89847899---997246689999998451-34774463896168867414010565410456675143599995688
No 20
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=26.34 E-value=4.6 Score=17.81 Aligned_cols=99 Identities=18% Similarity=0.259 Sum_probs=44.3
Q ss_pred HHHCCCCCCCCCCEEEEEEC-C-CCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCCCEEEEEEECCCHHHHH
Q ss_conf 86400011355403788622-6-885217889999999999998764984001321135447721113777503111210
Q gi|254780874|r 99 YLLLPKDTDDDKSCILEIRA-G-TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 (357)
Q Consensus 99 ~~LLpsde~D~~nailEI~a-G-aGG~EA~dwA~~L~rMY~r~ae~~gwk~eii~~~~ge~aGik~v~~~I~G~~aYg~L 176 (357)
..|.......-..+|+ ++- - ..-.|...|...+...|..+ |+.+-.++...++ |+.+..-.++|.-. .|
T Consensus 32 R~Lv~a~~~~i~pvIv-lnK~DL~~~~~~~~~~~~~~~~y~~~----g~~v~~~Sa~~~~--gl~~L~~~l~~~~~--vl 102 (231)
T d1t9ha2 32 RFLVLVEANDIQPIIC-ITKMDLIEDQDTEDTIQAYAEDYRNI----GYDVYLTSSKDQD--SLADIIPHFQDKTT--VF 102 (231)
T ss_dssp HHHHHHHTTTCEEEEE-EECGGGCCCHHHHHHHHHHHHHHHHH----TCCEEECCHHHHT--TCTTTGGGGTTSEE--EE
T ss_pred HHHHHHHHCCCCEEEE-EECCCCCCCHHHHHHHHHHHHHHHHC----CCCCEEEECCCHH--HHHHHHHHHCCCEE--EE
T ss_conf 9999999869977999-95601136488888999999997644----5550466248716--79999986435649--99
Q ss_pred HCCCCC--------------EEEEEECCCCCCCCCCEEEEEEEEE
Q ss_conf 002465--------------0267612545678511016888853
Q gi|254780874|r 177 KFESGV--------------HRVQRVPATEASGRVHTSAATVAVL 207 (357)
Q Consensus 177 k~E~Gv--------------HRvqRip~~es~gR~hTS~a~V~V~ 207 (357)
-+-||| -+.+-||.....|| ||++.+-.+.
T Consensus 103 ~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGr-HTTt~~~l~~ 146 (231)
T d1t9ha2 103 AGQSGVGKSSLLNAISPELGLRTNEISEHLGRGK-HTTRHVELIH 146 (231)
T ss_dssp EESHHHHHHHHHHHHCC--------------------CCCCCEEE
T ss_pred ECCCCCCHHHHHHHHCCHHHHHHCCCCCCCCCCC-EEEEEEEEEE
T ss_conf 8778734878987515176764035553358971-2443478886
No 21
>d1sqda2 d.32.1.3 (A:181-410) 4-hydroxyphenylpyruvate dioxygenase, HppD {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=23.05 E-value=18 Score=13.52 Aligned_cols=40 Identities=10% Similarity=0.079 Sum_probs=29.7
Q ss_pred CCCCCEEEEEEE-CCCHHHHHHCCCCCEEEEEECCCCCCCC
Q ss_conf 477211137775-0311121000246502676125456785
Q gi|254780874|r 157 DGGYKEIVATIS-GRGVFSRMKFESGVHRVQRVPATEASGR 196 (357)
Q Consensus 157 ~aGik~v~~~I~-G~~aYg~Lk~E~GvHRvqRip~~es~gR 196 (357)
..+|-++.+.+. -+.|-.|...=-|++++...+.++-...
T Consensus 20 l~~IDHI~iaVpdld~a~~~y~~~lG~~~~~~~~~~di~~~ 60 (230)
T d1sqda2 20 IRRLDHAVGNVPELGPALTYVAGFTGFHQFAEFTADDVGTA 60 (230)
T ss_dssp EEEEEEEEEECSCHHHHHHHHHHHHCCEEEEEEC-------
T ss_pred CCCCCCCEECCCCHHHHHHHHHHHCCCEEEEEECCCCCCCC
T ss_conf 48107165524589999999999709834677634310242
No 22
>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}
Probab=20.05 E-value=20 Score=13.26 Aligned_cols=22 Identities=18% Similarity=0.072 Sum_probs=15.5
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 55403788622688521788999999
Q gi|254780874|r 108 DDKSCILEIRAGTGGSEAALFVGDLF 133 (357)
Q Consensus 108 D~~nailEI~aGaGG~EA~dwA~~L~ 133 (357)
-.+++.|= -||+.|.+||-+|.
T Consensus 26 ~~k~V~Vv----GgGdsA~e~A~~L~ 47 (126)
T d1trba2 26 RNQKVAVI----GGGNTAVEEALYLS 47 (126)
T ss_dssp TTSEEEEE----CSSHHHHHHHHHHT
T ss_pred CCCEEEEE----CCCHHHHHHHHHHH
T ss_conf 99879998----89889999999974
Done!