PSIBLAST alignment of GI: 254780874 and protein with PDB id: 1rq0
gi|52695394|pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 Length = 342
>gi|52695395|pdb|1RQ0|B Chain B, Crystal Structure Of Peptide Releasing Factor 1 Length = 342
>gi|52695396|pdb|1RQ0|C Chain C, Crystal Structure Of Peptide Releasing Factor 1 Length = 342
Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats.
Identities = 147/335 (43%), Positives = 205/335 (61%), Gaps = 16/335 (4%)
Query: 22 RMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80
++ + EYA I I + + + ++ + L
Sbjct: 11 LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLR--------------EEG 56
Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140
L IEK +EL+ LL + I+EIR GTGG EAALF DLFRMY RYA
Sbjct: 57 ENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYA 116
Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200
+ W +EV + D GG +E+V + G+ + +K+ESGVHRVQRVP TE+ GR+HTS
Sbjct: 117 ERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTS 176
Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259
ATVAVLPE E D++I ED++I+T RASG GGQ+VN T+SAVRITH+PTGI+V +E
Sbjct: 177 TATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNE 236
Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319
+SQ+QN+ A+++LRARLY +++++ E S RK QIG+G+RSE+IRTYNF Q R+TDH
Sbjct: 237 RSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDH 296
Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354
RIN T Y+L+ +L G +D+II+ L+ +
Sbjct: 297 RINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331