PSIBLAST alignment of GI: 254780874 and protein with PDB id: 2b64
gi|88192257|pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. Length = 354
>gi|209156517|pdb|3D5A|X Chain X, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 354
Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats.
Identities = 153/338 (45%), Positives = 213/338 (63%), Gaps = 8/338 (2%)
Query: 24 SESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80
S+ + Y L+ YA + +I I Y + ++ + +++ D E++++A+
Sbjct: 20 SDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAK 75
Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140
E A+ LE E+ LLPKD D++ I+EIRAGTGG EAALF DLF MY R+A
Sbjct: 76 AEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFA 135
Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200
++ EVL S D GG+ ++V + G G + K+ESGVHRVQRVP TE GR+HTS
Sbjct: 136 EEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTS 195
Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259
ATVAVLP+A E D + +++IRID MRASG GGQ VNTTDSAVR+ H+PTGIMV
Sbjct: 196 TATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDS 255
Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319
+SQ +NR +A+ +LR+RL +++R A R QIG+G+RSE+IRTYNF Q R+TDH
Sbjct: 256 RSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDH 315
Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
RI T + LE VL G++ I+ L A Q + + + +E
Sbjct: 316 RIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE 353