BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] (357 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|15890803|ref|NP_356475.1| peptide chain release factor 1 [Agrobacterium tumefaciens str. C58] gi|22096038|sp|Q8U8B8|RF1_AGRT5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|15159088|gb|AAK89260.1| peptide chain release factor 1 [Agrobacterium tumefaciens str. C58] Length = 360 Score = 316 bits (810), Expect = 3e-84, Method: Composition-based stats. Identities = 231/357 (64%), Positives = 293/357 (82%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P++ KI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D ++RDLA++E+ +E IRELE ++ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLEALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA + WKVEVLS+S+ + GGYKEI+ATI+GRGVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPEA +IDV+I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTG++VTSSEKSQHQNR +AM+VLR+RLYD+ER+++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPTGLIVTSSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G ID++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGEIDELVDALIADYQAGQLAQLGE 357 >gi|84686944|ref|ZP_01014828.1| peptide chain release factor 1 [Maritimibacter alkaliphilus HTCC2654] gi|84665141|gb|EAQ11621.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2654] Length = 351 Score = 315 bits (807), Expect = 7e-84, Method: Composition-based stats. Identities = 192/354 (54%), Positives = 256/354 (72%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +MS+ S D ++ EYA + P++ +I+ + Q + +D Sbjct: 1 MVPLDKLDAITQRFQFLEAKMSQGLSGDEIAEVGREYAELKPVVEEIAAFRQLLSDIEDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD E+R+LA+ E+ + + + +E + LLP+D D + ++EIR GTGG Sbjct: 61 EAML----SDPEMRELAEDELPGLRERLPVMEQAMRVALLPRDAADARPAMVEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDL RMY+RYA R WK + L S + GG KE+VA +SG GVF+R+KFESGV Sbjct: 117 DEASLFAGDLLRMYQRYAEARGWKFDTLEQSLTEVGGVKEVVARVSGDGVFARLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIHIDPADIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+VTSSEKSQH+NR AM+VL+ RL+D ER+R +ER++ RK Q+GSGDR Sbjct: 237 AVRITHIPTGIVVTSSEKSQHRNREIAMQVLKTRLFDAERQRAHDERASARKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKL V+QG +D++I+ L+ A QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLGDVMQGDLDEVIDALIEADQAAKLAELE 350 >gi|332716892|ref|YP_004444358.1| peptide chain release factor 1 [Agrobacterium sp. H13-3] gi|325063577|gb|ADY67267.1| peptide chain release factor 1 [Agrobacterium sp. H13-3] Length = 360 Score = 312 bits (798), Expect = 7e-83, Method: Composition-based stats. Identities = 229/357 (64%), Positives = 292/357 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P++ K+ Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKVREYEKAVSEAA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D ++RDLA++E+ +E I ELE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLQALLADKTTDKDMRDLAEMELPEVEARIGELEKEMQVLLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+A+ + WKVEVLS+S+ + GGYKEI+ATISGRGVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFASAKGWKVEVLSASEGEAGGYKEIIATISGRGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPEA +IDV+I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTG++VTSSEKSQHQNR +AM+VLR+RLYD+ER+++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPTGLIVTSSEKSQHQNRAKAMQVLRSRLYDIERQKVESERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ID++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMIEGEIDELVDALIADYQAGQLAQLGE 357 >gi|119361587|sp|Q2K3T1|RF1_RHIEC RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 359 Score = 311 bits (797), Expect = 8e-83, Method: Composition-based stats. Identities = 227/357 (63%), Positives = 289/357 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D E+RDLA++E+ + I LE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLETLLEDKSVDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+A+ + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPTGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 357 >gi|114768932|ref|ZP_01446558.1| peptide chain release factor 1 [alpha proteobacterium HTCC2255] gi|114549849|gb|EAU52730.1| peptide chain release factor 1 [alpha proteobacterium HTCC2255] Length = 351 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 185/354 (52%), Positives = 260/354 (73%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +S +++ + RF +E +M++ +VD KL++EY+ + P++ +I Y + + Sbjct: 1 MVSQEKLEQICARFDYLEAKMADGSAVDEIAKLSKEYSDLKPVVDQIENYKATLLDISEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E++ LA+ E+ +++++ LE+++ LLPKD DDK I+EIRAGTGG Sbjct: 61 EEMLL----DPELKVLAEEELPNLKEKLPILEHKLLLSLLPKDEADDKPAIIEIRAGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY R+ + WK E++ ++ + GGYKE + + G GVF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYNRFCEDQGWKFEIVEGNETELGGYKEAIINVKGVGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GRVHTSAATVA++PEA ID++IP DIR+DT R+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPTTESGGRVHTSAATVAIMPEAENIDLEIPTTDIRLDTYRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM VLR RLYD++R++ A+ER+A RK Q+GSGDR Sbjct: 237 AVRITHLPTGLIVTSSEKSQHRNREIAMNVLRTRLYDLQRQQAADERAATRKDQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR++DHRINLTLYKL+ V+QG +++ I+ L QA + + Sbjct: 297 SERIRTYNFPQGRVSDHRINLTLYKLDQVMQGDLNEFIDALTADDQATKLSELN 350 >gi|260888149|ref|ZP_05899412.1| peptide chain release factor 1 [Selenomonas sputigena ATCC 35185] gi|330840016|ref|YP_004414596.1| Peptide chain release factor 1 [Selenomonas sputigena ATCC 35185] gi|260862178|gb|EEX76678.1| peptide chain release factor 1 [Selenomonas sputigena ATCC 35185] gi|329747780|gb|AEC01137.1| Peptide chain release factor 1 [Selenomonas sputigena ATCC 35185] Length = 355 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 248/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ ++ E+E +S+ + + KL+ E+A ++P++ K Y + ++ + Sbjct: 1 MLDKLHAVEEKYRELESLISDPAVLADMPKWQKLSREHAQLAPVVEKYREYKKVREGLLE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D N D+++R LA+ E+ + + LE E+ LLLPKD +D K+ I+EIR G G Sbjct: 61 AKAIF-DDNPDADMRRLAEEEIAELRPRLEALERELPILLLPKDPNDAKNVIVEIRGGVG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA R W+V+V+ + + GG+KEI ++ G G +S +K+ESG Sbjct: 120 GEEAALFAGDLFRMYARYAERRGWRVDVIDKNATEIGGFKEIAFSVDGAGAYSFLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+SGR+HTSA TVAVLPEA E++V+I D+RIDT ASG+GGQ+VN T+ Sbjct: 180 THRVQRVPVTESSGRIHTSAVTVAVLPEAEEVEVEIAPADLRIDTYCASGAGGQYVNRTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +A+RITH+PTGI+V EKSQ +N+ +AM+VLRAR+ + R+ A +A+RK Q+GSG Sbjct: 240 TAIRITHLPTGIVVQCQDEKSQLKNKEKAMRVLRARILEAAREEQAATVAADRKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTL+KL VL G +D+++ L+TA QA+ + A Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLHKLAAVLDGDLDELLAALITADQAEKLRQAE 355 >gi|222149911|ref|YP_002550868.1| peptide chain release factor 1 [Agrobacterium vitis S4] gi|254790856|sp|B9JT13|RF1_AGRVS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|221736893|gb|ACM37856.1| peptide chain release factor 1 [Agrobacterium vitis S4] Length = 359 Score = 310 bits (793), Expect = 2e-82, Method: Composition-based stats. Identities = 223/357 (62%), Positives = 284/357 (79%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ +L+ RF EIE RMS P+ D Y+KL EY+ + P++ I ++E Sbjct: 1 MAKLPVDKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVKAIRELGLAEKEVA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D ++D E+RDLA++E+ +E + LE EI LLPKD D+KS ILEIRAGT Sbjct: 61 DLKALLADKSTDREMRDLAEMELPDVEARLEGLEKEIQIQLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA + WKVEVLSSS+ D GG+KEI+AT++GRGVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFAAGKGWKVEVLSSSEGDAGGFKEIIATVTGRGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPEA EID+++ EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEAEEIDIEVRAEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTG++VTSSEKSQHQNR +AM+VLR+RL+D+ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPTGLVVTSSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ ++ G ID++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMMGEIDEVVDALIADYQAGQLAQLGE 357 >gi|259418822|ref|ZP_05742739.1| peptide chain release factor 1 [Silicibacter sp. TrichCH4B] gi|259345044|gb|EEW56898.1| peptide chain release factor 1 [Silicibacter sp. TrichCH4B] Length = 444 Score = 309 bits (792), Expect = 3e-82, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 259/355 (72%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + R+ +E M++ KL +EY+ + P+ +I Y Q + + Sbjct: 95 MIPEDRLEQILQRYQYLEAAMADGAG-GDIAKLAKEYSDLRPVAEQIRAYRQLLSDLAEA 153 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +++ LA+ E+ ++ + E E+ + LLPKD D ++ ILEIR GTGG Sbjct: 154 EEMLA----DPDMKALAEEEIPTLKAALPEAEHALQLALLPKDEADSRAAILEIRPGTGG 209 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL+RMY RYA + WK++V+ ++ GG KE+VA I+G GVF+R+K+ESGV Sbjct: 210 DEAALFAGDLYRMYSRYAEAQGWKIDVIEEQVSELGGLKELVARINGDGVFARLKYESGV 269 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 270 HRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKIDANDLRIDTMRSSGAGGQHVNTTDS 329 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 330 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDSERSADRASQVGSGDR 389 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKLE ++ G +D+II+ L++ HQAK++ + Sbjct: 390 SERIRTYNFPQGRMSDHRINLTLYKLEQIMGGDLDEIIDALISEHQAKLLAEMGQ 444 >gi|222087303|ref|YP_002545840.1| peptide chain release factor 1 [Agrobacterium radiobacter K84] gi|254790855|sp|B9JB75|RF1_AGRRK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|221724751|gb|ACM27907.1| peptide chain release factor 1 [Agrobacterium radiobacter K84] Length = 359 Score = 309 bits (791), Expect = 4e-82, Method: Composition-based stats. Identities = 226/357 (63%), Positives = 288/357 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E Sbjct: 1 MANLPIEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVAKIRDYEKAIAEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D + D E+RDLA +E+ +++ I LE +I LLLPKD D+KS ILEIRAGT Sbjct: 61 DLEAMLADKSVDREMRDLADMELPEVKERIEVLEQDIQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA WKVE+LS+SD + GGYKE++ATI+G+GVFSR+KFES Sbjct: 121 GGSEAALFGGDLFRMYERFAANNGWKVEILSASDGEAGGYKEVIATITGKGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+P+GI+VTSSEKSQHQNR +AM+VLR+RL+D+ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPSGIVVTSSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ID++++ L +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGEIDEVVDALRADYQASQLAQLGE 357 >gi|159044282|ref|YP_001533076.1| peptide chain release factor 1 [Dinoroseobacter shibae DFL 12] gi|189039970|sp|A8LLU7|RF1_DINSH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157912042|gb|ABV93475.1| peptide chain release factor 1 [Dinoroseobacter shibae DFL 12] Length = 351 Score = 309 bits (790), Expect = 6e-82, Method: Composition-based stats. Identities = 195/354 (55%), Positives = 260/354 (73%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF IE RM+ + + L EYA + P++++I+ Y + + + + Sbjct: 1 MVPTEKLAQITERFEYIEARMAAGAAGEDIAALGREYAELKPVVAEIAAYSRARADLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R LA+ E+ A++ I E+E + LLPKD D + ++EIR GTGG Sbjct: 61 EAML----DDPEMRALAEEEIPALKARIPEMEQALRLALLPKDAADARPAMIEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ +++S S + GG KE++A +SG GVF+++K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEAQGWRFQIVSESLTELGGIKEVIAHVSGSGVFAKLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA +D+DIP DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPVTESGGRIHTSAATVAVLPEAEAVDIDIPASDIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTG++VTSSEKSQH+NR AM+VLRARLYD+ER+R ERSA RK Q+GSGDR Sbjct: 237 AVRITHIPTGLVVTSSEKSQHRNRDIAMQVLRARLYDLERQRADAERSAARKGQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D++I L QA+++ Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLDQVMQGDLDEVIAALAADDQARLLAEVE 350 >gi|254488030|ref|ZP_05101235.1| peptide chain release factor 1 [Roseobacter sp. GAI101] gi|214044899|gb|EEB85537.1| peptide chain release factor 1 [Roseobacter sp. GAI101] Length = 371 Score = 308 bits (789), Expect = 7e-82, Method: Composition-based stats. Identities = 192/356 (53%), Positives = 255/356 (71%), Gaps = 4/356 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++ + RF +E MS + KL +EYA + P++ +I Y Q Q+ D Sbjct: 20 AMIPMDRLAQITQRFQFLEASMSAGSDGADFAKLAKEYADLRPVVEQIEGYRQLLQDMDD 79 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+ +LA+ E+ ++ EI + E + LLPKD D K +LEIR GTG Sbjct: 80 ARAMLK----DPEMAELAEEELPRLKAEIPKAEASLQLALLPKDAADTKPAMLEIRPGTG 135 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL RMY+RYA + WK +++ + GG KE+VA I G+ VF+R+K+ESG Sbjct: 136 GDEAALFAADLLRMYQRYAEAQGWKFDLIEEQLTELGGVKEVVAHIKGQNVFARLKYESG 195 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TE+ GR+HTSAATVAVLPEA ++D+ + D+RIDTMR+SG+GGQHVNTTD Sbjct: 196 VHRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHVDPNDLRIDTMRSSGAGGQHVNTTD 255 Query: 242 SAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 SAVRITHIPTGI+VTSSEKSQH+NR AM+VL+ARLYD ER+R+ +ERSA+R Q+GSGD Sbjct: 256 SAVRITHIPTGIVVTSSEKSQHRNREIAMQVLKARLYDAERQRVDSERSADRAAQVGSGD 315 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRINLTLY+L+ +LQG +D+II+ L QA+M+ + Sbjct: 316 RSERIRTYNFPQGRMTDHRINLTLYRLDAILQGDLDEIIDALTADAQARMLAEMGQ 371 >gi|150397700|ref|YP_001328167.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419] gi|166223607|sp|A6UCF2|RF1_SINMW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|150029215|gb|ABR61332.1| peptide chain release factor 1 [Sinorhizobium medicae WSM419] Length = 360 Score = 308 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 231/357 (64%), Positives = 290/357 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS PS D Y+KL EY+ + P++SKI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPSADVYVKLASEYSELQPVVSKIRAYEKATAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D +D ++RDLA++E IE+ + LE EI LLLPKD D+KS ILEIRAGT Sbjct: 61 DIGAMLADRATDKDMRDLAELEKPEIEERVEALEQEIQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYAA + W+VEVLS+S+ + GGYKEI+AT+SGRGVFSR+KFES Sbjct: 121 GGSEAALFAGDLFRMYERYAAGKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID+DI EDIR+DTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIDIRSEDIRVDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTG++VTSSEKSQHQNR +AM+VLR+RLYD+ER+R +ERSA+R+ Q+GSG Sbjct: 241 DSAVRITHLPTGLVVTSSEKSQHQNRAKAMQVLRSRLYDMERQRADSERSADRRNQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLT+YKL+ V++G ID+I++ LL +QA + E Sbjct: 301 DRSERIRTYNFPQGRLTDHRINLTIYKLDRVMEGEIDEIVDALLADYQASQLALLGE 357 >gi|89054297|ref|YP_509748.1| peptide chain release factor 1 [Jannaschia sp. CCS1] gi|119361551|sp|Q28RD9|RF1_JANSC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|88863846|gb|ABD54723.1| bacterial peptide chain release factor 1 (bRF-1) [Jannaschia sp. CCS1] Length = 354 Score = 307 bits (787), Expect = 1e-81, Method: Composition-based stats. Identities = 187/352 (53%), Positives = 250/352 (71%), Gaps = 4/352 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF +E +++ P K++ EYA + P++++I+ Y+Q + + Sbjct: 5 LPRDRLRQITDRFEYLEAQLNGGPDPSDIAKISREYAELKPVVAEIAGYEQLLADMAEAQ 64 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D ++R LA+ E+ +E I E + LLPKD D K ++EIR GTGG Sbjct: 65 NMLA----DPDMRPLAEEELPRLEAAIPAAEQSLQLALLPKDAADAKPAMIEIRPGTGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL RMY RYA R W++E++ ++D GG KE A + G VF+R+KFESGVH Sbjct: 121 EAALFAGDLLRMYTRYAEARGWRLEIVDLQESDLGGIKECTARVEGENVFARLKFESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSAATVAVLPEA ++D+DIP DIRIDTMRASG+GGQHVNTTDSA Sbjct: 181 RVQRVPETESGGRIHTSAATVAVLPEAEDVDIDIPATDIRIDTMRASGAGGQHVNTTDSA 240 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+P+GI+V SSEKSQH+NR AM+ LR RLYD+ER++ + +A+RK QIGSGDRS Sbjct: 241 VRITHVPSGIVVVSSEKSQHRNREIAMQTLRTRLYDLERQKADDAMAADRKAQIGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+I++ L QA + Sbjct: 301 ERIRTYNFPQGRMTDHRINLTLYKLDAVMLGDLDEIVDALTAEDQAMKLAEM 352 >gi|310829178|ref|YP_003961535.1| peptide chain release factor 1 [Eubacterium limosum KIST612] gi|308740912|gb|ADO38572.1| peptide chain release factor 1 [Eubacterium limosum KIST612] Length = 357 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 173/357 (48%), Positives = 258/357 (72%), Gaps = 4/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L +++ E+ ++++ + + KL +E+A I PII++ + Y + + ++ Sbjct: 1 MLEKLDFLSSKYQELNEKIADPDIIADQAQWQKLMKEHAHIEPIINRYNEYKKTLEGIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + ++ + E+ + + LE+E+ LLLPKD +DDK+ I+EIRAG G Sbjct: 61 SKEMLSDKSIDKDFEEMCKAELDELTERKAALEDELKVLLLPKDPNDDKNVIVEIRAGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 GSEAALF GDLFRM+ RYA + WK E+++S+ D GG KEI +I GRG +SR+K+ESG Sbjct: 121 GSEAALFAGDLFRMFTRYAERQGWKSEIMNSNIPDIGGIKEITFSIEGRGAYSRLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE+ GR+HTS ATVAVLPEA ++++DI D+RID R+SG+GGQ VNTTD Sbjct: 181 VHRVQRIPSTESGGRIHTSTATVAVLPEAEDVEIDINPNDLRIDVYRSSGNGGQCVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH PTG++V EKSQ +N+ +AMKVL+ARL+++E ++ +E + NRK Q+G+G Sbjct: 241 SAVRITHEPTGMVVTCQDEKSQLKNKEKAMKVLKARLFEIEMQKQQSEIAENRKSQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRI +T+Y+LE L G ID++++ L+T+ QA+ + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRIGMTVYQLEAFLDGEIDEMVDALITSDQAEKLKQQGE 357 >gi|209551100|ref|YP_002283017.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|238054472|sp|B5ZRR4|RF1_RHILW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|209536856|gb|ACI56791.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 359 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 227/357 (63%), Positives = 292/357 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKAIAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D E+RDLA++E+ ++++I LE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLETLLEDKSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER++A + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFSAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+P+GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPSGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGRITDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRITDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 357 >gi|307321056|ref|ZP_07600462.1| peptide chain release factor 1 [Sinorhizobium meliloti AK83] gi|306893331|gb|EFN24111.1| peptide chain release factor 1 [Sinorhizobium meliloti AK83] Length = 360 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 233/357 (65%), Positives = 292/357 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS PS D Y+KL EY+ + P++SKI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPSADVYVKLASEYSELQPVVSKIRAYEKATAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D +D ++RDLA++E +E++I LE EI LLLPKD D+KS ILEIRAGT Sbjct: 61 DIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQEIQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF G+LFRMYERYAA + W+VEVLS+S+ + GGYKEI+AT+SGRGVFSR+KFES Sbjct: 121 GGSEAALFAGNLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPEA EID+D+ EDIR+DTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGI+VTSSEKSQHQNR +AM+VLR+RLYD+ER+R +ERSA+R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIVVTSSEKSQHQNRAKAMQVLRSRLYDMERQRADSERSADRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G IDD+++ LL +QA + E Sbjct: 301 DRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGEIDDVVDALLADYQASQLALLGE 357 >gi|241206502|ref|YP_002977598.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860392|gb|ACS58059.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 359 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 226/357 (63%), Positives = 293/357 (82%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI +Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVTKIRVYEKAVAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D E+R+LA++E+ ++++I LE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLETLLEDRSVDREMRELAELELPEVKEQIEVLEQEMQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+P+GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPSGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 357 >gi|116254019|ref|YP_769857.1| peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae 3841] gi|119361588|sp|Q1MBB2|RF1_RHIL3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|115258667|emb|CAK09771.1| putative peptide chain release factor 1 [Rhizobium leguminosarum bv. viciae 3841] Length = 359 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 226/357 (63%), Positives = 293/357 (82%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI +Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVTKIRVYEKAVTELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D E+RDLA++E+ ++++I LE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLETLLEDRSVDREMRDLAELELPEVKEQIEALEQEMQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA + WKVEVLS+S+ + GGYKEI+ATI+G+GVF+++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGKGVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+P+GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPSGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 357 >gi|15966364|ref|NP_386717.1| peptide chain release factor 1 [Sinorhizobium meliloti 1021] gi|307313049|ref|ZP_07592676.1| peptide chain release factor 1 [Sinorhizobium meliloti BL225C] gi|20139338|sp|Q92MK5|RF1_RHIME RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|15075635|emb|CAC47190.1| Probable peptide chain release factor 1 (RF-1) protein [Sinorhizobium meliloti 1021] gi|306899368|gb|EFN30002.1| peptide chain release factor 1 [Sinorhizobium meliloti BL225C] Length = 360 Score = 307 bits (785), Expect = 2e-81, Method: Composition-based stats. Identities = 234/357 (65%), Positives = 292/357 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS PS D Y+KL EY+ + P++SKI Y++ E Sbjct: 1 MAKLPVEKMRELERRFGEIEARMSAGPSADVYVKLASEYSELQPVVSKIRAYEKATAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D +D ++RDLA++E +E++I LE EI LLLPKD D+KS ILEIRAGT Sbjct: 61 DIAAMLADRATDKDMRDLAEMEKPEVEEKIEALEQEIQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYAA + W+VEVLS+S+ + GGYKEI+AT+SGRGVFSR+KFES Sbjct: 121 GGSEAALFAGDLFRMYERYAASKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPEA EID+D+ EDIR+DTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEASGRIHTSAATVAVLPEAEEIDIDVRPEDIRVDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGI+VTSSEKSQHQNR +AM+VLR+RLYD+ER+R +ERSA+R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIVVTSSEKSQHQNRAKAMQVLRSRLYDMERQRADSERSADRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G IDD+++ LL +QA + E Sbjct: 301 DRSERIRTYNFPQGRLTDHRINLTLYKLDRMMEGEIDDVVDALLADYQASQLALLGE 357 >gi|83942386|ref|ZP_00954847.1| peptide chain release factor 1 [Sulfitobacter sp. EE-36] gi|83846479|gb|EAP84355.1| peptide chain release factor 1 [Sulfitobacter sp. EE-36] Length = 351 Score = 306 bits (784), Expect = 3e-81, Method: Composition-based stats. Identities = 190/355 (53%), Positives = 256/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E MS + KL +EYA + P++ +I Y Q Q+ D Sbjct: 1 MIPMDRLAQITQRFQFLEASMSAGSDGADFAKLAKEYADLRPVVEQIDAYRQLLQDMDDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+ +LA+ E+ ++ + + E ++ LLP+D D K +LEIR GTGG Sbjct: 61 RAMLK----DPEMAELAEEELPRLKAALPQAEADLQLALLPRDEADKKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA R WKVE++ + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAADLLRMYQRYAEARGWKVELIEQQFTELGGVKEVVAHIKGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ARLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKARLYDMERQRVDSERSASRAAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLY+LE V+QG +D+I++ L QA+++ + Sbjct: 297 SERIRTYNFPQGRLTDHRINLTLYRLEAVMQGDLDEIVDALTADAQAQLLAEMGQ 351 >gi|306844842|ref|ZP_07477425.1| peptide chain release factor 1 [Brucella sp. BO1] gi|306274774|gb|EFM56555.1| peptide chain release factor 1 [Brucella sp. BO1] Length = 359 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 280/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI ++E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARKEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|163759877|ref|ZP_02166961.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43] gi|162282835|gb|EDQ33122.1| peptide chain release factor 1 [Hoeflea phototrophica DFL-43] Length = 361 Score = 306 bits (783), Expect = 4e-81, Method: Composition-based stats. Identities = 225/357 (63%), Positives = 288/357 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++I +L+ RF E+E RM+ P +AY+KL EY+ + P++ +I D E Sbjct: 1 MARLPTEKIRELERRFGEVEARMAAGPDPEAYVKLASEYSDLQPLVDQIRALDAALAERS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D E+RDLA+ E+ + + I ELE +I +LLPKD D++S ILEIRAGT Sbjct: 61 DLEAMLQDTANDKEMRDLAESELRSTKVRIGELEEQIEIMLLPKDAADERSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA+ RKWKVEVLS+S+ + GGYKEI+ATISG+GVF+R+KFES Sbjct: 121 GGSEAALFAGDLFRMYERYASSRKWKVEVLSASEGEAGGYKEIIATISGKGVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPEA +ID+++ EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETESGGRIHTSAATVAVLPEAEDIDIEVRSEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTG++VTSSEKSQHQNR RAM+VLRARLYD+ER+R +ERS +R+ Q+GSG Sbjct: 241 DSAVRITHLPTGLVVTSSEKSQHQNRARAMQVLRARLYDMERQRADDERSQSRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ ++ G ID++++ L++ HQA + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMMGEIDEVVDALISDHQAGQLATLGD 357 >gi|83953606|ref|ZP_00962327.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1] gi|83841551|gb|EAP80720.1| peptide chain release factor 1 [Sulfitobacter sp. NAS-14.1] Length = 351 Score = 305 bits (782), Expect = 4e-81, Method: Composition-based stats. Identities = 189/355 (53%), Positives = 256/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E MS + KL +EYA + P++ +I Y Q Q+ D Sbjct: 1 MIPMDRLAQITQRFQFLEASMSAGSDGADFAKLAKEYADLRPVVEQIDAYRQLLQDMDDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D+E+ +LA+ E+ ++ + + E ++ LLP+D D K +LEIR GTGG Sbjct: 61 RAMLK----DTEMAELAEEELPRLKAALPQAEADLQLALLPRDEADKKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA R WK E++ + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAADLLRMYQRYAEARGWKFELIEQQFTELGGVKEVVAHIKGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ARLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKARLYDMERQRVDSERSASRAAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLY+LE V+QG +D+I++ L QA+++ + Sbjct: 297 SERIRTYNFPQGRLTDHRINLTLYRLEAVMQGDLDEIVDALTADAQAQLLAEMGQ 351 >gi|260433480|ref|ZP_05787451.1| peptide chain release factor 1 [Silicibacter lacuscaerulensis ITI-1157] gi|260417308|gb|EEX10567.1| peptide chain release factor 1 [Silicibacter lacuscaerulensis ITI-1157] Length = 351 Score = 305 bits (782), Expect = 5e-81, Method: Composition-based stats. Identities = 187/355 (52%), Positives = 259/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E MS+ S L +EY+ + P++ +I+ + Q + + + Sbjct: 1 MIPEERLEQITQRFQYLEAAMSDGASGGDIAALAKEYSDLKPVVEQIAAWRQLRADLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D ++++LA+ E+ ++ I E E+ + LLPKD D + +LEIR GTGG Sbjct: 61 EAMLG----DPDMKELAEEEIPQLKARIPEAEHALQLALLPKDAADARPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W+ E++ + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWQFEIIEEQHTELGGIKEVVAHIKGDNVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDPNDIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGIVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLYKL+ ++QG +D++I+ L QA+++ ++ Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLDQIMQGDLDEVIDALTADDQARLLAEMAQ 351 >gi|163746457|ref|ZP_02153815.1| peptide chain release factor 1 [Oceanibulbus indolifex HEL-45] gi|161380342|gb|EDQ04753.1| peptide chain release factor 1 [Oceanibulbus indolifex HEL-45] Length = 351 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 190/354 (53%), Positives = 258/354 (72%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E MS + L +EY+ + P++ +I +Y Q +++ ++ Sbjct: 1 MIPMHRLAQISQRFQFLEASMSAGSDGADFAALAKEYSDLKPVVDQIDLYQQLQRDLEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+ +LA+ E+ + + E+E + LLP+D D K +LEIR GTGG Sbjct: 61 QEMLK----DPEMAELAREELPRLRARLPEVEGALQLALLPRDAADAKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W +++ S + GG KE+VA I+G+ VF+R+KFESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWGFDLIESQMTELGGVKEVVAHITGQNVFARLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+ GR+HTSAATVAVLPEA ++D++I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIEINANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+VTSSEKSQH+NR +AM+VL+ARLYD+ER R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHIPTGIVVTSSEKSQHRNRDKAMQVLKARLYDMERGRIDSERSADRAAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY+LE V+QG +D+II+ L QA+ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYRLEAVMQGDLDEIIDALTADAQARQLSEME 350 >gi|304438485|ref|ZP_07398425.1| peptide chain release factor RF1 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368568|gb|EFM22253.1| peptide chain release factor RF1 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 354 Score = 305 bits (781), Expect = 6e-81, Method: Composition-based stats. Identities = 173/358 (48%), Positives = 248/358 (69%), Gaps = 8/358 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ +++++ E+E +S+ + + + T E+AA++PI+ Y + Sbjct: 1 MLS--KLAAVEDKYRELETLLSDPSVMADMAVWQRYTREHAALTPIVEAYQSYRRALATI 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D+E++ + E+ E E L E+ LLLP+D +DDK+ I+EIR G Sbjct: 59 DEDKEMLAEA--DAEMKAMLTEEIAEAEAERDRLAAELPILLLPRDPNDDKNVIVEIRGG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF LFRMY RYA + W+ EVLSS+ + GG+KEI +SG G +S++K+E Sbjct: 117 VGGEEAALFAASLFRMYARYAERQGWRTEVLSSNPTEIGGFKEITFLVSGAGAYSKLKYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPEA E++V I D+RIDT ASG+GGQ+VN Sbjct: 177 SGTHRVQRIPVTESGGRIHTSAVTVAVLPEAEEVEVTIDPNDLRIDTYCASGAGGQYVNR 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T++A+RITHIPTGI+V EKSQ +NR +AMKVLRARLYD ++ A+ +A+R+ Q+G Sbjct: 237 TETAIRITHIPTGIVVQCQDEKSQLKNREKAMKVLRARLYDRAQQEQADAVAADRRSQVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRI LTLYK++ V+ G +D+++ L+TA QA+ + A+ Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRIGLTLYKIDAVMDGELDELLAGLITADQAERLKQAN 354 >gi|265982882|ref|ZP_06095617.1| peptide chain release factor 1 [Brucella sp. 83/13] gi|306838261|ref|ZP_07471111.1| peptide chain release factor 1 [Brucella sp. NF 2653] gi|264661474|gb|EEZ31735.1| peptide chain release factor 1 [Brucella sp. 83/13] gi|306406664|gb|EFM62893.1| peptide chain release factor 1 [Brucella sp. NF 2653] Length = 359 Score = 305 bits (781), Expect = 7e-81, Method: Composition-based stats. Identities = 219/357 (61%), Positives = 280/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI ++E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARKEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D+++N L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVNALISDHQTALLAELGE 357 >gi|149914649|ref|ZP_01903179.1| peptide chain release factor 1 [Roseobacter sp. AzwK-3b] gi|149811442|gb|EDM71277.1| peptide chain release factor 1 [Roseobacter sp. AzwK-3b] Length = 351 Score = 305 bits (780), Expect = 9e-81, Method: Composition-based stats. Identities = 193/356 (54%), Positives = 255/356 (71%), Gaps = 6/356 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + ++ ++ RF +E +MS KL EYA + P++ +I Y Q + + Sbjct: 1 MTMVPLDRLNEILQRFEYLEAQMSAGGG--DIAKLGREYAELRPVVEEIRAYRQVLDDLE 58 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D E+RDLA+ E+ A++ +LE ++ LLPKD D + ILEIR GT Sbjct: 59 AARAMLA----DPEMRDLAEEELTALQARKPKLEEQLQLALLPKDKADARPAILEIRPGT 114 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDL RMY RYA R W E++ ++ + GG KE++A ++G VF+R+KFES Sbjct: 115 GGEEAALFAGDLLRMYHRYAEARGWSFEIIEQNETELGGIKEVIARVAGDHVFARLKFES 174 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPEA ++DV I D+RIDTMR+SG+GGQHVNTT Sbjct: 175 GVHRVQRVPETESGGRIHTSAATVAVLPEAEDVDVQIDPGDLRIDTMRSSGAGGQHVNTT 234 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+VTSSEKSQH+NR AM+VL+ RLYD+ER+R A+ERSA+R Q+G+G Sbjct: 235 DSAVRITHLPTGIVVTSSEKSQHRNREIAMQVLKTRLYDLERQRAADERSASRAAQVGTG 294 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D++I+ L QA ++ Sbjct: 295 DRSERIRTYNFPQGRMTDHRINLTLYKLDQVMQGDLDEVIDALRADAQATLLAEMG 350 >gi|260467160|ref|ZP_05813338.1| peptide chain release factor 1 [Mesorhizobium opportunistum WSM2075] gi|259029084|gb|EEW30382.1| peptide chain release factor 1 [Mesorhizobium opportunistum WSM2075] Length = 359 Score = 304 bits (779), Expect = 1e-80, Method: Composition-based stats. Identities = 219/356 (61%), Positives = 277/356 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ + RF +E +MS P+ DAY+K+ EYA + +++K+ + E+ Sbjct: 1 MVNLPRDRMDQVVKRFEMLEAQMSAGPAPDAYVKMASEYAELQEMVAKVRALRSAEHEQA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D+E+R LA+ ++ +E+ I L+ +I LLLP+D DDK+ ILEIRAGT Sbjct: 61 DLEAMLADKGTDAEMRALAEADLPGVEERIEALQKDIQLLLLPRDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA W+ E +S+SD D GG+KEI+ATISGRGVF+ +KFES Sbjct: 121 GGDEAALFAGDLFRMYERYAAEHGWRFETVSASDGDAGGFKEIIATISGRGVFAHLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGR+HTSAATVAVLPEA E+D+DI EDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGIMV +EKSQHQNR +AM++LRARLYD+ER + ERS RK Q+GSG Sbjct: 241 DSAVRITHLPTGIMVVQAEKSQHQNRAKAMQILRARLYDMERSKADEERSEARKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D++I+ L+ HQ+K++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMMGELDEVIDALIADHQSKLLADIG 356 >gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] gi|254040551|gb|ACT57347.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 304 bits (778), Expect = 1e-80, Method: Composition-based stats. Identities = 357/357 (100%), Positives = 357/357 (100%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ Sbjct: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT Sbjct: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES Sbjct: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG Sbjct: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE Sbjct: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 >gi|265993634|ref|ZP_06106191.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str. Ether] gi|262764615|gb|EEZ10536.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str. Ether] Length = 372 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 280/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D+Y+KL EY+ + ++ KI + E Sbjct: 14 MIALPQDRMDQLLKRFSMIESQMANNPDSDSYVKLASEYSELQDVVGKIRELSDARMEAS 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 74 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 133 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 134 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 194 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 253 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 254 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 313 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 314 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDELVDALISDHQTALLAELGE 370 >gi|62290730|ref|YP_222523.1| peptide chain release factor 1 [Brucella abortus bv. 1 str. 9-941] gi|82700642|ref|YP_415216.1| peptide chain release factor 1 [Brucella melitensis biovar Abortus 2308] gi|189024940|ref|YP_001935708.1| peptide chain release factor 1 [Brucella abortus S19] gi|254694507|ref|ZP_05156335.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya] gi|254696132|ref|ZP_05157960.1| peptide chain release factor 1 [Brucella abortus bv. 2 str. 86/8/59] gi|254707598|ref|ZP_05169426.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10] gi|256258272|ref|ZP_05463808.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68] gi|260545992|ref|ZP_05821732.1| peptide chain release factor 1 [Brucella abortus NCTC 8038] gi|260760500|ref|ZP_05872843.1| peptide chain release factor 1 [Brucella abortus bv. 2 str. 86/8/59] gi|261214824|ref|ZP_05929105.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya] gi|261315085|ref|ZP_05954282.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10] gi|75496230|sp|Q57B22|RF1_BRUAB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361513|sp|Q2YLN8|RF1_BRUA2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238689404|sp|B2S825|RF1_BRUA1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|62196862|gb|AAX75162.1| PrfA, peptide chain release factor 1 [Brucella abortus bv. 1 str. 9-941] gi|82616743|emb|CAJ11828.1| Class I peptide chain release factor domain:Peptide chain release factor 1:PCRF domain [Brucella melitensis biovar Abortus 2308] gi|189020512|gb|ACD73234.1| Class I peptide chain release factor domain protein [Brucella abortus S19] gi|260096099|gb|EEW79975.1| peptide chain release factor 1 [Brucella abortus NCTC 8038] gi|260670932|gb|EEX57753.1| peptide chain release factor 1 [Brucella abortus bv. 2 str. 86/8/59] gi|260916431|gb|EEX83292.1| peptide chain release factor 1 [Brucella abortus bv. 3 str. Tulya] gi|261304111|gb|EEY07608.1| peptide chain release factor 1 [Brucella pinnipedialis M163/99/10] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 217/357 (60%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|265996886|ref|ZP_06109443.1| peptide chain release factor 1 [Brucella ceti M490/95/1] gi|262551354|gb|EEZ07344.1| peptide chain release factor 1 [Brucella ceti M490/95/1] Length = 372 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 14 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 74 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 133 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS +KFES Sbjct: 134 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSTLKFES 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 194 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 253 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 254 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 313 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 314 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 370 >gi|163843895|ref|YP_001628299.1| peptide chain release factor 1 [Brucella suis ATCC 23445] gi|189039961|sp|B0CIC3|RF1_BRUSI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|163674618|gb|ABY38729.1| peptide chain release factor 1 [Brucella suis ATCC 23445] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 217/357 (60%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+ T+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIITTVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|256158374|ref|ZP_05456272.1| peptide chain release factor 1 [Brucella ceti M490/95/1] gi|256253793|ref|ZP_05459329.1| peptide chain release factor 1 [Brucella ceti B1/94] gi|260169300|ref|ZP_05756111.1| peptide chain release factor 1 [Brucella sp. F5/99] gi|261758813|ref|ZP_06002522.1| peptide chain release factor 1 [Brucella sp. F5/99] gi|261738797|gb|EEY26793.1| peptide chain release factor 1 [Brucella sp. F5/99] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS +KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSTLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|23502722|ref|NP_698849.1| peptide chain release factor 1 [Brucella suis 1330] gi|161619787|ref|YP_001593674.1| peptide chain release factor 1 [Brucella canis ATCC 23365] gi|254700516|ref|ZP_05162344.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513] gi|254704887|ref|ZP_05166715.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686] gi|254708865|ref|ZP_05170676.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94] gi|254713712|ref|ZP_05175523.1| peptide chain release factor 1 [Brucella ceti M644/93/1] gi|254715938|ref|ZP_05177749.1| peptide chain release factor 1 [Brucella ceti M13/05/1] gi|256030391|ref|ZP_05444005.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1] gi|256370269|ref|YP_003107780.1| peptide chain release factor 1 [Brucella microti CCM 4915] gi|260567639|ref|ZP_05838109.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40] gi|261217701|ref|ZP_05931982.1| peptide chain release factor 1 [Brucella ceti M13/05/1] gi|261316358|ref|ZP_05955555.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94] gi|261321452|ref|ZP_05960649.1| peptide chain release factor 1 [Brucella ceti M644/93/1] gi|261751020|ref|ZP_05994729.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513] gi|261755581|ref|ZP_05999290.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686] gi|32171563|sp|Q8FYK3|RF1_BRUSU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039960|sp|A9M8K5|RF1_BRUC2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|23348737|gb|AAN30764.1| peptide chain release factor 1 [Brucella suis 1330] gi|161336598|gb|ABX62903.1| peptide chain release factor 1 [Brucella canis ATCC 23365] gi|256000432|gb|ACU48831.1| peptide chain release factor 1 [Brucella microti CCM 4915] gi|260157157|gb|EEW92237.1| peptide chain release factor 1 [Brucella suis bv. 4 str. 40] gi|260922790|gb|EEX89358.1| peptide chain release factor 1 [Brucella ceti M13/05/1] gi|261294142|gb|EEX97638.1| peptide chain release factor 1 [Brucella ceti M644/93/1] gi|261295581|gb|EEX99077.1| peptide chain release factor 1 [Brucella pinnipedialis B2/94] gi|261740773|gb|EEY28699.1| peptide chain release factor 1 [Brucella suis bv. 5 str. 513] gi|261745334|gb|EEY33260.1| peptide chain release factor 1 [Brucella suis bv. 3 str. 686] Length = 359 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|294851112|ref|ZP_06791785.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026] gi|294819701|gb|EFG36700.1| peptide chain release factor 1 [Brucella sp. NVSL 07-0026] Length = 377 Score = 304 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMSDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 139 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 375 >gi|126725348|ref|ZP_01741190.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150] gi|126704552|gb|EBA03643.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2150] Length = 421 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 187/353 (52%), Positives = 254/353 (71%), Gaps = 5/353 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +++ + D ++L+ EY+ + P+ +I + Q+ Sbjct: 72 MVPMDKLYQITARFEFLEAKLASGET-DNIVELSREYSELKPVADQIMAFQTLVQDIDAA 130 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R+LA E+ + + + EN I +LLPKDT D + I+EIR GTGG Sbjct: 131 EAML----DDPEMRELAAEELKELRDSLPDAENAIKLVLLPKDTADARPAIIEIRPGTGG 186 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA WK E++ ++ GG KEI+A I G VF ++KFESGV Sbjct: 187 DEAALFAGDLLRMYQRYAESNGWKFEIIEEQVSELGGIKEIIANIKGTNVFGKLKFESGV 246 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+DIP D+RIDTMRASG+GGQHVNTTDS Sbjct: 247 HRVQRVPTTESGGRIHTSAATVAVLPEAEEVDLDIPASDLRIDTMRASGAGGQHVNTTDS 306 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++V S EKSQH+NR AM+V+R+RLY++ER+++A+ER+A+RK Q+GSGDR Sbjct: 307 AVRITHLPTGMIVVSMEKSQHRNREIAMQVMRSRLYEMERQKVADERAADRKSQVGSGDR 366 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+II+ L QA+ + Sbjct: 367 SERIRTYNFPQGRMTDHRINLTLYKLDQVMSGELDEIIDALHADDQAQKLAEL 419 >gi|316984833|gb|EFV63790.1| peptide chain release factor 1 [Neisseria meningitidis H44/76] gi|325140851|gb|EGC63361.1| peptide chain release factor 1 [Neisseria meningitidis CU385] gi|325144920|gb|EGC67204.1| peptide chain release factor 1 [Neisseria meningitidis M01-240013] Length = 385 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 28 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 87 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 88 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIR 143 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 144 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 203 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 204 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 263 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 264 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 323 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 324 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 383 Query: 356 SE 357 + Sbjct: 384 GD 385 >gi|260576769|ref|ZP_05844754.1| peptide chain release factor 1 [Rhodobacter sp. SW2] gi|259021021|gb|EEW24332.1| peptide chain release factor 1 [Rhodobacter sp. SW2] Length = 351 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 184/354 (51%), Positives = 248/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E +++ L+ EY + P++++IS Y + + Sbjct: 1 MVPMEKLDQISRRFEFLEAKLAAGAGHAEIASLSREYTDLKPVVAEISAYRRALDDLAQA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R LA+ E+ +++ I ELE + LLPKD D + ILEIR GTGG Sbjct: 61 EALLA----DPEMRPLAEEELPSLKARIPELEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA + W+ E++ D+D GG +++ + G GVF+++K+ESGV Sbjct: 117 DEAALFAADLLRMYQRYAESQGWRFEIIDQQDSDLGGIRDVTVHVQGAGVFAKLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GRVHTSAATVAVLPEA E+D+DIP DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESQGRVHTSAATVAVLPEAEEVDLDIPASDIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTS++KSQH+NR AM+VLRARLYD+ER R+ R+A+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSAQKSQHRNRDLAMQVLRARLYDLERARVDGARAADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + +I+ L+ QA + Sbjct: 297 SERIRTYNFPQGRLTDHRINLTLYALPQIMAGDLGGVIDALVAQDQADKLAEME 350 >gi|256112206|ref|ZP_05453127.1| peptide chain release factor 1 [Brucella melitensis bv. 3 str. Ether] Length = 359 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 280/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D+Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDSYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDELVDALISDHQTALLAELGE 357 >gi|237816235|ref|ZP_04595228.1| peptide chain release factor 1 [Brucella abortus str. 2308 A] gi|260758776|ref|ZP_05871124.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292] gi|260884577|ref|ZP_05896191.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68] gi|297247116|ref|ZP_06930834.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196] gi|237788302|gb|EEP62517.1| peptide chain release factor 1 [Brucella abortus str. 2308 A] gi|260669094|gb|EEX56034.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292] gi|260874105|gb|EEX81174.1| peptide chain release factor 1 [Brucella abortus bv. 9 str. C68] gi|297174285|gb|EFH33632.1| peptide chain release factor 1 [Brucella abortus bv. 5 str. B3196] Length = 377 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 217/357 (60%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 139 GGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 375 >gi|220933707|ref|YP_002512606.1| peptide chain release factor 1 [Thioalkalivibrio sp. HL-EbGR7] gi|254790905|sp|B8GLA1|RF1_THISH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219995017|gb|ACL71619.1| peptide chain release factor 1 [Thioalkalivibrio sp. HL-EbGR7] Length = 361 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + RF E+ +SE + + +L+ EY+ + P++ Y+ + Sbjct: 1 MKPSLLHRLEGVSERFQELAGLLSEPEVISDNARFRRLSMEYSQLEPVVEAFRRYEGAQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D D ++R +A+ E + + LE E+ LL+PKD D + LEIR Sbjct: 61 DLTAAREMQKDP--DPDLRAMAEDEAATAAERLETLELELQKLLIPKDPHDHSNLFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE+LS S+ + GGYKE++A + G G +SR+K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAENQGWQVEILSQSEGEHGGYKEVIARLIGAGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVAV+PE E++ +I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSAATVAVMPEPDEVEAPEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+TH+PTGI+V E+SQH+NR RAM +L A+L++ E+ R E+SA RK Sbjct: 239 VNKTDSAIRLTHLPTGIVVECQDERSQHKNRARAMSLLAAKLFEAEQARQQAEQSATRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGRITDHRINLTLYKL+ V+ G +D +I PL+ HQA+ + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRITDHRINLTLYKLDAVMAGDLDPVIEPLINEHQAEKLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|148558947|ref|YP_001259697.1| peptide chain release factor 1 [Brucella ovis ATCC 25840] gi|265987430|ref|ZP_06099987.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1] gi|148370204|gb|ABQ60183.1| peptide chain release factor 1 [Brucella ovis ATCC 25840] gi|264659627|gb|EEZ29888.1| peptide chain release factor 1 [Brucella pinnipedialis M292/94/1] Length = 377 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 139 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 375 >gi|86359340|ref|YP_471232.1| peptide chain release factor 1 [Rhizobium etli CFN 42] gi|86283442|gb|ABC92505.1| peptide chain release factor 1 protein [Rhizobium etli CFN 42] Length = 351 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 225/347 (64%), Positives = 284/347 (81%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E DL T++ D + Sbjct: 3 ELERRFGEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELADLETLLEDKS 62 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D E+RDLA++E+ + I LE E+ LLLPKD D+KS ILEIRAGTGGSEAALF G Sbjct: 63 VDREMRDLAELELPEVRARIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALFAG 122 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DLFRMYER+A+ + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFESGVHRVQRVP Sbjct: 123 DLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRVPE 182 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+P Sbjct: 183 TEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHLP 242 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 TGI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSGDRSERIRTYN Sbjct: 243 TGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIRTYN 302 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 F QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 303 FPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 349 >gi|225628073|ref|ZP_03786108.1| peptide chain release factor 1 [Brucella ceti str. Cudo] gi|261220926|ref|ZP_05935207.1| peptide chain release factor 1 [Brucella ceti B1/94] gi|225616898|gb|EEH13945.1| peptide chain release factor 1 [Brucella ceti str. Cudo] gi|260919510|gb|EEX86163.1| peptide chain release factor 1 [Brucella ceti B1/94] Length = 377 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS +KFES Sbjct: 139 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSTLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 375 >gi|99080782|ref|YP_612936.1| peptide chain release factor 1 [Ruegeria sp. TM1040] gi|119361610|sp|Q1GI42|RF1_SILST RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|99037062|gb|ABF63674.1| bacterial peptide chain release factor 1 (bRF-1) [Ruegeria sp. TM1040] Length = 350 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 259/355 (72%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + R+ +E M++ KL +EY+ + P++ +IS Y Q + + Sbjct: 1 MIPEDRLQQILQRYQYLEAAMADGAG-GDIAKLAKEYSDLRPVVEQISAYQQLLSDLAEA 59 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +++ LA+ E+ ++ + + E+ + LLPKD D ++ ILEIR GTGG Sbjct: 60 EEMLA----DPDMKALAEEEIPTLKAALPQAEHALQLALLPKDEADSRAAILEIRPGTGG 115 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL+RMY RYA + WKV+V+ ++ GG KE+VA I+G GVF+R+K+ESGV Sbjct: 116 DEAALFAADLYRMYSRYAETQGWKVDVIEEQASELGGLKELVARINGDGVFARLKYESGV 175 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMRASG+GGQHVNTTDS Sbjct: 176 HRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIKIDANDLRIDTMRASGAGGQHVNTTDS 235 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ ERSA+R Q+GSGDR Sbjct: 236 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDTERSADRASQVGSGDR 295 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++ G +D+II+ L++ HQAK++ + Sbjct: 296 SERIRTYNFPQGRMSDHRINLTLYKLDQIMGGDLDEIIDALISEHQAKLLAEMGQ 350 >gi|83644569|ref|YP_433004.1| peptide chain release factor 1 [Hahella chejuensis KCTC 2396] gi|119361548|sp|Q2SL95|RF1_HAHCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83632612|gb|ABC28579.1| peptide chain release factor 1 [Hahella chejuensis KCTC 2396] Length = 360 Score = 303 bits (775), Expect = 3e-80, Method: Composition-based stats. Identities = 183/362 (50%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK+R+ E+ +S+ + + + +L++EYA + P++ Y Sbjct: 1 MKESIKLKLDLLKDRYEEVGALLSDPDIISVQEKFKELSKEYAELEPVVQCYQEYQNALN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D SD+++R++A+ E+ A E+ +LE ++ LLLP+D D + LEIR Sbjct: 61 AIEESKLLLND--SDADMREMAKEELAAAEESSEQLEKDLQILLLPRDPRDGSNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA L+KWKVE++S S + GGYKE+++ ++G VF+ +K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAELKKWKVEIVSESPGEHGGYKEVISRVAGDNVFNLLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA+LPE E+ DVDI D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAILPEVEEVGDVDINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR +AM +L+A+L +++ A E++ RK Sbjct: 239 VNKTDSAIRITHLPSGIVVECQDERSQHKNRAKAMSLLKAKLLSSAQEKQAKEQAQTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLYKLE V+QG +D +I PLL +QA+M+ S Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYKLEEVVQGDLDPVIQPLLQEYQAEMLASI 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|161511164|ref|NP_539109.2| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M] gi|225853308|ref|YP_002733541.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457] gi|260562790|ref|ZP_05833276.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M] gi|20139330|sp|Q8YJ95|RF1_BRUME RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790867|sp|C0RFB5|RF1_BRUMB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225641673|gb|ACO01587.1| peptide chain release factor 1 [Brucella melitensis ATCC 23457] gi|260152806|gb|EEW87898.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. 16M] Length = 359 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDELVDALISDHQTALLAELGE 357 >gi|225023585|ref|ZP_03712777.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC 23834] gi|224943680|gb|EEG24889.1| hypothetical protein EIKCOROL_00444 [Eikenella corrodens ATCC 23834] Length = 358 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +S ++ + +L +E+A ++P++ Y Q + Sbjct: 1 MKPSVLDKLQSLSERLEEVTALLSTPEATVDINRFRQLNQEHAELTPVVEAYRQYRQAES 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ D E++D A E+ A + +I L+ E+ LLLPKD DD K+ LE+R Sbjct: 61 DLADAEDMLA----DPEMKDFAAEEIEAAKAKIETLDTELQKLLLPKDEDDGKNIFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DL RMY RYA +W+VE++S++++D GGYKE++A I+G G + R+K Sbjct: 117 AGTGGDEAALFAADLLRMYTRYAERNRWQVEIVSANESDLGGYKEVIARIAGIGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E ++ + ++RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEEIQLNPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAIRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|254504878|ref|ZP_05117029.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11] gi|222440949|gb|EEE47628.1| peptide chain release factor 1 [Labrenzia alexandrii DFL-11] Length = 357 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 198/356 (55%), Positives = 271/356 (76%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ ++ +L +RFAE+E MS +P +Y+KL+ EYA + P++ KI + +++ + Sbjct: 1 MLARHKLDNLLDRFAELEHMMSANPDPASYVKLSREYAGLEPLVLKIRALVKAEEDLKGA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D +D E+R+LA++E + + + L ++ LLPKD D ILE+RAGTGG Sbjct: 61 EDLIEDPATDPEMRELAELERDELSENVERLTQDVRIGLLPKDEADTNDAILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA LR WKVE+LS+S+ + GG+KE++A++SG VF+R+KFESGV Sbjct: 121 DEAALFAGDLFRMYQRYAELRGWKVEILSASEGEVGGFKEVIASVSGENVFARLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTSAATVAVLP+A +D+D+ D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPATESGGRIHTSAATVAVLPQAENVDIDVQDSDLRIDTFRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI+V E+SQH+N+ RAM++LRAR+YD ER+R A+ER+ R+LQ+GSGD Sbjct: 241 AVRITHIPTGIVVAVQDERSQHKNKARAMQLLRARIYDEERERAASERTEARRLQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRI LTLYKL+ ++ G +D++I L+ +QA ++ S Sbjct: 301 RSERIRTYNFPQGRVTDHRIGLTLYKLDQIIAGESLDEVIEALILDYQANLLASEE 356 >gi|313667936|ref|YP_004048220.1| peptide chain release factor I [Neisseria lactamica ST-640] gi|313005398|emb|CBN86832.1| peptide chain release factor I [Neisseria lactamica 020-06] Length = 358 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A +SP++ Y + + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDALDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|114766145|ref|ZP_01445149.1| peptide chain release factor 1 [Pelagibaca bermudensis HTCC2601] gi|114541605|gb|EAU44647.1| peptide chain release factor 1 [Roseovarius sp. HTCC2601] Length = 349 Score = 302 bits (774), Expect = 4e-80, Method: Composition-based stats. Identities = 186/354 (52%), Positives = 245/354 (69%), Gaps = 6/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ ++ RF +E RM+E L EYA + P++ +I + + + + Sbjct: 1 MIPSDRLQQIRERFEYLEARMAEGSG--DIAALGREYAELRPVVDQIHDWTSLQADLAEA 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+++LA+ E+ + + E E + LLPKD D + +LEIR GTGG Sbjct: 59 EAML----DDPEMKELAEEELPGLRARLPEAEKALQLALLPKDAADARPAMLEIRPGTGG 114 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W+ EV+ + GG +E+V I G VF+R+K+ESGV Sbjct: 115 EEAALFAGDLARMYQRYAEARGWRWEVIEEQPTELGGLRELVVRIEGDNVFARLKYESGV 174 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA +D+DI DIRIDTMRASG+GGQHVNTTDS Sbjct: 175 HRVQRVPETESGGRIHTSAATVAVLPEAEAVDIDIAAADIRIDTMRASGAGGQHVNTTDS 234 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+VTSSEKSQH+NR AM VLR RL+D+ER++ A+ R+++RK Q+GSGDR Sbjct: 235 AVRITHIPTGIVVTSSEKSQHRNREIAMNVLRTRLFDLERQKAADARASDRKAQVGSGDR 294 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRI LTLY+LE +L G +D+II+ L QA + Sbjct: 295 SERIRTYNFPQGRMTDHRIGLTLYRLEQILAGDLDEIIDALTADAQAAQLAEMG 348 >gi|254671653|emb|CBA09383.1| peptide chain release factor 1 [Neisseria meningitidis alpha153] Length = 372 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 15 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 74 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 75 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVR 130 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 131 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 190 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 191 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQH 250 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 251 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 310 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 311 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 370 Query: 356 SE 357 + Sbjct: 371 GD 372 >gi|261323819|ref|ZP_05963016.1| peptide chain release factor 1 [Brucella neotomae 5K33] gi|261299799|gb|EEY03296.1| peptide chain release factor 1 [Brucella neotomae 5K33] Length = 372 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 217/357 (60%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 14 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 74 DVAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 133 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 134 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 194 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 253 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 254 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 313 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 314 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 370 >gi|256059849|ref|ZP_05450036.1| peptide chain release factor 1 [Brucella neotomae 5K33] Length = 359 Score = 302 bits (773), Expect = 5e-80, Method: Composition-based stats. Identities = 217/357 (60%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 61 DVAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 357 >gi|187930213|ref|YP_001900700.1| peptide chain release factor 1 [Ralstonia pickettii 12J] gi|238691828|sp|B2UDM7|RF1_RALPJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|187727103|gb|ACD28268.1| peptide chain release factor 1 [Ralstonia pickettii 12J] Length = 360 Score = 302 bits (773), Expect = 6e-80, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI ++ ++D Y KLT E+A + P++++ + + Q ++ Sbjct: 1 MKPSMLSKLDQLAERIVEINALLAREDATANLDQYRKLTREHAELEPVVAQFAAWKQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D +++ A+ E+ A + + LE E+ LLLPKD +D ++ +EIR Sbjct: 61 DIATAQELAA----DPDMKAFAEDELRAARERMESLEGELQRLLLPKDPNDHRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSESPSDLGGYKEVIARLVGEGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G ID+++ L HQA+ + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDAIMDGDIDELVGALAAEHQAEQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|254511294|ref|ZP_05123361.1| peptide chain release factor 1 [Rhodobacteraceae bacterium KLH11] gi|221535005|gb|EEE37993.1| peptide chain release factor 1 [Rhodobacteraceae bacterium KLH11] Length = 357 Score = 302 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 257/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E M++ S L +EY+ + P++ +I + Q + + Sbjct: 7 MIPEERLEQITQRFQYLEAAMADGASGGDIAALAKEYSDLKPVVDQILGWRQLVADLAEA 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD ++++LA+ E+ ++ I E E+ + LLP+D D + +LEIR GTGG Sbjct: 67 EAML----SDPDMKELAEEEIPQLQARIPEAEHALQLALLPRDAADARPAMLEIRPGTGG 122 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W+ E++ +D GG KE+VA I G VF+RMK+ESGV Sbjct: 123 DEAALFAGDLLRMYQRYAEGRGWQFEIIEEQASDLGGIKEVVAHIKGDNVFARMKYESGV 182 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMR+SG+GGQHVNTTDS Sbjct: 183 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDANDIRIDTMRSSGAGGQHVNTTDS 242 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+P+GI+VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ + RSA+R Q+GSGDR Sbjct: 243 AVRITHLPSGIVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDSARSADRASQVGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D++I+ L QA+++ ++ Sbjct: 303 SERIRTYNFPQGRMTDHRINLTLYKLDQVMQGDLDEVIDALTADDQARLLAEMAQ 357 >gi|261378877|ref|ZP_05983450.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685] gi|269144693|gb|EEZ71111.1| peptide chain release factor 1 [Neisseria cinerea ATCC 14685] Length = 358 Score = 302 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|265999301|ref|ZP_05465736.2| peptide chain release factor 1 [Brucella melitensis bv. 2 str. 63/9] gi|17982074|gb|AAL51373.1| bacterial peptide chain release factor 1 (rf-1) [Brucella melitensis bv. 1 str. 16M] gi|263093126|gb|EEZ17261.1| peptide chain release factor 1 [Brucella melitensis bv. 2 str. 63/9] gi|326409872|gb|ADZ66937.1| peptide chain release factor 1 [Brucella melitensis M28] gi|326539585|gb|ADZ87800.1| peptide chain release factor 1 [Brucella melitensis M5-90] Length = 377 Score = 302 bits (772), Expect = 6e-80, Method: Composition-based stats. Identities = 218/357 (61%), Positives = 279/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 139 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDELVDALISDHQTALLAELGE 375 >gi|298369801|ref|ZP_06981117.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str. F0314] gi|298281261|gb|EFI22750.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str. F0314] Length = 358 Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|261379805|ref|ZP_05984378.1| peptide chain release factor 1 [Neisseria subflava NJ9703] gi|284797490|gb|EFC52837.1| peptide chain release factor 1 [Neisseria subflava NJ9703] Length = 358 Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL A L D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAALLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|296313476|ref|ZP_06863417.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768] gi|296839995|gb|EFH23933.1| peptide chain release factor 1 [Neisseria polysaccharea ATCC 43768] Length = 358 Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|190893591|ref|YP_001980133.1| peptide chain release factor 1 protein [Rhizobium etli CIAT 652] gi|190698870|gb|ACE92955.1| peptide chain release factor 1 protein [Rhizobium etli CIAT 652] Length = 351 Score = 302 bits (772), Expect = 7e-80, Method: Composition-based stats. Identities = 225/347 (64%), Positives = 285/347 (82%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E DL T++ D Sbjct: 3 ELERRFDEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELADLDTLLEDKA 62 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D E+RDLA++E+ +++ I LE E+ LLLPKD D+KS ILEIRAGTGGSEAALF G Sbjct: 63 VDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALFAG 122 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DLFRMYER+AA + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFESGVHRVQRVP Sbjct: 123 DLFRMYERFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRVPE 182 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+P Sbjct: 183 TEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHLP 242 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 +GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSGDRSERIRTYN Sbjct: 243 SGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIRTYN 302 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 F QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 303 FPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 349 >gi|255065586|ref|ZP_05317441.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256] gi|255050411|gb|EET45875.1| peptide chain release factor 1 [Neisseria sicca ATCC 29256] Length = 358 Score = 302 bits (772), Expect = 8e-80, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y Q + Sbjct: 1 MKPSIIEKLQQLSDRLEEVTSLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQQAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKVKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|319637760|ref|ZP_07992526.1| peptide chain release factor 1 [Neisseria mucosa C102] gi|317400915|gb|EFV81570.1| peptide chain release factor 1 [Neisseria mucosa C102] Length = 358 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|254476963|ref|ZP_05090349.1| peptide chain release factor 1 [Ruegeria sp. R11] gi|214031206|gb|EEB72041.1| peptide chain release factor 1 [Ruegeria sp. R11] Length = 351 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 185/355 (52%), Positives = 247/355 (69%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E MS+ S + L +EY+ + P+ +I Y + + + Sbjct: 1 MIPEDRLEQILQRFQYLEAAMSDGASGEDIAALAKEYSDLRPVAEQIISYRRLLADLDEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++ LA+ E+ + + E E + LLP+D D K +LEIR GTGG Sbjct: 61 EQMLA----DPDMAALAEEELPGLRAALPEAEQALQLALLPRDAADSKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W E++ + GG KE+VA + G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEAQGWTFEIIEEQSTELGGLKEVVAHVKGNNVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I D+RIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPVTESGGRIHTSAATVAVLPEAEEVDLRIDPADLRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+V SSEKSQH+NR AM+VLR RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHIPTGIIVVSSEKSQHRNREIAMQVLRTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++QG +D+II+ L QA+ + + Sbjct: 297 SERIRTYNFPQGRMSDHRINLTLYKLDQIMQGDLDEIIDALTADDQARRLAEMGQ 351 >gi|325128768|gb|EGC51631.1| peptide chain release factor 1 [Neisseria meningitidis N1568] Length = 358 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A +SP++ Y + + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAELSPVVEVFQHYRRAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|261399946|ref|ZP_05986071.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970] gi|269210396|gb|EEZ76851.1| peptide chain release factor 1 [Neisseria lactamica ATCC 23970] Length = 358 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDIDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|260881387|ref|ZP_05404264.2| peptide chain release factor 1 [Mitsuokella multacida DSM 20544] gi|260849258|gb|EEX69265.1| peptide chain release factor 1 [Mitsuokella multacida DSM 20544] Length = 360 Score = 301 bits (771), Expect = 9e-80, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 251/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +++++ E+E +S+ + + T+E+AA++PII+K Y + + ++ Sbjct: 6 EKLQAVEDKYRELESLISDPETMADMAKWQAYTKEHAALTPIITKFRRYKEVLKGIEEAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++G+ D E+ + E+ + ++ L+ E+ LLLPKD +D+K+ I+EIR G GG Sbjct: 66 SMLGEA-LDHEMHAFVESELADLMEQKEALDKELPILLLPKDPNDEKNVIVEIRGGVGGE 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA + WKVE++ ++ + GG+KE+ ++G G +S +K+ESG H Sbjct: 125 EAALFAGDLFRMYSRYAEKKGWKVELMDANATEIGGFKEVTFMVTGYGAYSYLKYESGTH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSAATVAVLPEA ++DV I D+RIDT ASG+GGQ+VN T++A Sbjct: 185 RVQRVPVTESGGRIHTSAATVAVLPEAEDVDVAINPADLRIDTYCASGAGGQYVNRTETA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V EKSQ +N+ +AMKVLRAR+ D R+ +A+R+ Q+GSGDR Sbjct: 245 IRITHLPTGIVVQCQDEKSQLKNKEKAMKVLRARILDKARQEQEAAVAADRRSQVGSGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRI LTL+K++ +L G +D+++ L+TA QA+ + + Sbjct: 305 SERIRTYNFPQGRVTDHRIGLTLHKIDAILDGDLDELLAALITADQAERLKKVN 358 >gi|239907764|ref|YP_002954505.1| peptide chain release factor 1 [Desulfovibrio magneticus RS-1] gi|259585220|sp|C4XIQ1|RF1_DESMR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|239797630|dbj|BAH76619.1| peptide chain release factor 1 [Desulfovibrio magneticus RS-1] Length = 357 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 179/354 (50%), Positives = 258/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ ++E ++S V + KL++ ++ +S +++ Y + Q+ +D Sbjct: 4 KLESLERKYEDLERQLSAPDVVSDQERFRKLSKTHSDLSDVVAAFREYKKIAQDLEDNQE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D EIR+LAQ E A+++ ELE + LLLPKD D+K+ +LEIRAGTGG E Sbjct: 64 MAQDP--DPEIRELAQAETKALKEAQVELEARLKVLLLPKDPMDEKNILLEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA ++WKVE++S S+ GG+KE++A+ISG V+SR+K+ESG HR Sbjct: 122 AALFAGDLFRMYTRYAETKRWKVEIMSQSETGSGGFKEVIASISGDKVYSRLKYESGAHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSA TVA++PEA E+DV I ++RID R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPATESQGRIHTSAVTVAIMPEAEEVDVAIDPNELRIDVYRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIP+G++V EKSQH+N+ +A+KVLR+RL VE+ + E+ A R+ Q+G+GDRS Sbjct: 242 RVTHIPSGLVVICQDEKSQHKNKAKALKVLRSRLLQVEQDKQRAEQEAARRSQVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY+L+ VL+G +D++ L+ +QA+ + + ++ Sbjct: 302 ERIRTYNFPQGRVTDHRINLTLYRLDAVLEGDLDELCGALIGHYQAEALKAQAD 355 >gi|309378429|emb|CBX22924.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 358 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A +SP++ Y + + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDIDNYRKLTREHAELSPVVEVFQHYRRAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D ++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKHEAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|218672481|ref|ZP_03522150.1| peptide chain release factor 1 [Rhizobium etli GR56] Length = 352 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 226/352 (64%), Positives = 290/352 (82%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + P+++KI Y++ E Sbjct: 1 MAKLPVEKMRELERRFDEIEARMSAGPAADVYVKLASEYSELQPVVTKIRAYEKAVAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D E+RDLA++E+ +++ I LE E+ LLLPKD D+KS ILEIRAGT Sbjct: 61 DLDTLLEDKSVDREMRDLAELELPEVKERIEALEQEMQILLLPKDAADEKSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYER+AA + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFES Sbjct: 121 GGSEAALFAGDLFRMYERFAAEKSWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+P+GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHLPSGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQL 352 >gi|304321558|ref|YP_003855201.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503] gi|303300460|gb|ADM10059.1| peptide chain release factor 1 [Parvularcula bermudensis HTCC2503] Length = 360 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 195/356 (54%), Positives = 260/356 (73%), Gaps = 4/356 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ LK RFAE+E +M+++ D ++L++E+A + P+ + +Q D Sbjct: 1 MIPQDKLNALKTRFAEVEAKMAKATEADEIVRLSKEHAELKPVAEAALLLTDARQGLLDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++D E+ ++A+ E+ ++ +I LE ++ +LLPKD D ILE+RAGTGG Sbjct: 61 EGLTK--STDPEMAEMAKEEIASLTGQIERLEADLQLMLLPKDKADQAPVILEVRAGTGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYAA R W+VE+LS++++ GGYKEI A +SG VF R+KFESGV Sbjct: 119 DEAALFAGDLFRMYQRYAATRGWRVEILSATESGVGGYKEIQANVSGDNVFGRLKFESGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAATVAVLPE +ID+DI D+RID RASG GGQ VNTTDS Sbjct: 179 HRVQRVPETETQGRIHTSAATVAVLPEPEDIDIDIQESDLRIDVFRASGPGGQSVNTTDS 238 Query: 243 AVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTG++V+ + KSQH+NR +AMKVLRARLY+ ER R+A ER+A RK Q+GSGD Sbjct: 239 AVRITHIPTGVVVSQQDEKSQHKNRAKAMKVLRARLYEAERSRVAAERAAERKGQVGSGD 298 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +DD+I+ L+ QA+ + + Sbjct: 299 RSERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEAVDDLIDALIVEDQAERLAAME 354 >gi|53804790|ref|YP_113526.1| peptide chain release factor 1 [Methylococcus capsulatus str. Bath] gi|61214591|sp|Q60A21|RF1_METCA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|53758551|gb|AAU92842.1| peptide chain release factor 1 [Methylococcus capsulatus str. Bath] Length = 360 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 251/355 (70%), Gaps = 6/355 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ +L +RF EI ++ + + L+ EYA + P ++ Y + + Sbjct: 6 QQKLENLSHRFEEITGLLATPEVQNDQNRFKALSREYAQLEPCVACFRRYRETLEGLDHA 65 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D D E+R LA+ E+ K LE E+ LLLP+D +D+++ LE+RAGTGG Sbjct: 66 QALLQDP--DPEVRSLAREELETGRKRCDALEQELQILLLPRDPNDERNVFLEVRAGTGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EAA+F GDL RMY RYA + W+ E++S S+ + GGYKE+V ISG+ V+SR+KFE+G Sbjct: 124 AEAAIFAGDLQRMYSRYAERQGWRAEIVSESEGEHGGYKEVVMRISGQNVYSRLKFEAGT 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSA TVA+LPE ++++DI D+RIDT RASG+GGQHVN TDS Sbjct: 184 HRVQRVPTTEAQGRIHTSACTVAILPEFDDVEIDINPADLRIDTFRASGAGGQHVNRTDS 243 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTG +V E+SQH+NR RAM +L+AR+ +++ +E +A+RKLQ+GSGD Sbjct: 244 AIRITHIPTGTVVECQDERSQHKNRARAMSLLQARILAAAQEKQNSEIAASRKLQVGSGD 303 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLT+Y+L+ +++G +D +I+PLL HQA M+ S + Sbjct: 304 RSERIRTYNFPQGRLTDHRINLTIYRLDAIMEGDLDPVIDPLLQEHQADMLASLA 358 >gi|163735803|ref|ZP_02143232.1| peptide chain release factor 1 [Roseobacter litoralis Och 149] gi|161390889|gb|EDQ15229.1| peptide chain release factor 1 [Roseobacter litoralis Och 149] Length = 351 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 190/355 (53%), Positives = 256/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E MS L +EY+ + P++ +IS Y Q + +D Sbjct: 1 MIPLDRLRQITERFQYLEAAMSTGDGGGDIATLAKEYSDLRPVVEQISAYQQLLNDLEDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D ++ LA+ E+ ++ + + E + LLPKD D K +LEIR GTGG Sbjct: 61 AEMLG----DPDMAPLAEEEIPRLKSALPQAEAALQLALLPKDKADAKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA + WKV+V+ + + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLFRMYQRYAETQGWKVDVIELQETELGGIKEVVAHIKGADVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIEANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ARLYD+ER R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKARLYDLERSRVDDERSADRAAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLY+L+ +LQG +D+II+ L QA+++ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYRLDAILQGDLDEIIDALTAHAQAQLMADMGQ 351 >gi|15677534|ref|NP_274690.1| peptide chain release factor 1 [Neisseria meningitidis MC58] gi|20139351|sp|Q9JY93|RF1_NEIMB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|7226940|gb|AAF42034.1| peptide chain release factor 1 [Neisseria meningitidis MC58] gi|325134780|gb|EGC57417.1| peptide chain release factor 1 [Neisseria meningitidis M13399] gi|325199720|gb|ADY95175.1| peptide chain release factor 1 [Neisseria meningitidis H44/76] gi|325205597|gb|ADZ01050.1| peptide chain release factor 1 [Neisseria meningitidis M04-240196] Length = 358 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|56697312|ref|YP_167678.1| peptide chain release factor 1 [Ruegeria pomeroyi DSS-3] gi|81558450|sp|Q5LQM7|RF1_SILPO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56679049|gb|AAV95715.1| peptide chain release factor 1 [Ruegeria pomeroyi DSS-3] Length = 351 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 187/355 (52%), Positives = 257/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E M++ S L +EY+ + P++ +I+ + Q + + Sbjct: 1 MIPEERLDQITQRFQYLEAAMADGASGSDIAALAKEYSDLRPVVEQIAAWRQLCADMDEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD +++ LA+ E+ ++ + E E + LLPKD D + +LEIR GTGG Sbjct: 61 RAML----SDPDMKALAEEELPLLKARLPEAEQALQLALLPKDAADARPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R WK+E++ + + GG KE+VA ISG VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWKLELIELQETELGGIKEVVARISGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAQDVDIQIDPGDIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+P+GI+VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ ERSA+R Q+G+GDR Sbjct: 237 AVRITHLPSGIVVTSSEKSQHRNREIAMQVLKTRLYDLERQRLDRERSASRSAQVGTGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D++I+ L QA+M+ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLDAVMQGDLDEVIDALAADGQARMLAEMGQ 351 >gi|188587462|ref|YP_001919007.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus JW/NM-WN-LF] gi|229470350|sp|B2A3J0|RF1_NATTJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|179352149|gb|ACB86419.1| peptide chain release factor 1 (bRF-1) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 357 Score = 301 bits (770), Expect = 1e-79, Method: Composition-based stats. Identities = 175/356 (49%), Positives = 254/356 (71%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ E+E MS+ ++ KL ++E+A++ I++K Y + KQE ++ Sbjct: 1 MLDKLEGIEKRYQELEDLMSDPEVINDPEKLKQYSKEHASLEEIVNKYRQYLETKQEFEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +++ D ++ + + E+ +E +++E+ + + LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AKEMLEENDEDPDMEEFLKDEIPRLENQMQEIYDSLKILLLPKDPNDEKNVIVEIRAGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WK E++ S + D GG+KEIV I G+ +SR+KFESG Sbjct: 121 GDEAALFAADLYRMYTRYAEIMNWKTEIMDSHEKDMGGFKEIVFMIEGKNAYSRLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TE+SGR+HTS ATVAVLPEA +++++I ++RIDT A+G GGQ VNTT Sbjct: 181 VHRVQRVPSTESSGRIHTSTATVAVLPEAEDVEIEIDTNELRIDTFCATGPGGQSVNTTQ 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH PTG++V EKSQH+NR +AMKVLRAR+YD+ + + + RK Q+GSG Sbjct: 241 SAVRITHEPTGVVVSCQDEKSQHKNRDKAMKVLRARIYDMYLEEQQQQEAEERKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRITDHRIN T ++LE VL+G ID++I+ L+T QA+ + Sbjct: 301 DRSERIRTYNFPQGRITDHRINFTTHRLEQVLEGEIDELIDALITTEQAEQLKKMG 356 >gi|304394129|ref|ZP_07376052.1| peptide chain release factor 1 [Ahrensia sp. R2A130] gi|303293569|gb|EFL87946.1| peptide chain release factor 1 [Ahrensia sp. R2A130] Length = 358 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 211/356 (59%), Positives = 277/356 (77%), Gaps = 1/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++I L +R AE+ MSE+P + Y+KL +EYA + P++ KI + E DL Sbjct: 1 MLPPEKIEQLVSRHAEVARLMSENPDQETYVKLAKEYAELDPVVIKIGEMQAAQSEFADL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++D+E++++AQ E+ ++ I E E E+ LLLP+D D K+ ILEIRAGTGG Sbjct: 61 AGMLADGDTDAEMKEMAQAEMEPLKAAIEEHEAELQILLLPRDEADAKNAILEIRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 SEAALF GDLFRMY+R+A WKV+VLS S + GGYKEI+A+I+G GVF+R+KFESGV Sbjct: 121 SEAALFAGDLFRMYQRHAETSGWKVDVLSESAGEVGGYKEIIASINGTGVFARLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GRVHTSAATVAVLPEA ++D++I EDIRIDTMRASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESGGRVHTSAATVAVLPEAEDVDIEIRNEDIRIDTMRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTG++V S+EKSQHQNR AMK LR RLYD+ER+++ ER+ +RK Q+GSGDR Sbjct: 241 AVRITHIPTGVVVLSTEKSQHQNRANAMKELRTRLYDMERQKVDQERADSRKGQVGSGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++ G +D++++ L+T HQA ++ S + Sbjct: 301 SERIRTYNFPQGRVSDHRINLTLYKLDKMIAGEGLDEMLDALITDHQANLLASLGD 356 >gi|161870534|ref|YP_001599706.1| peptide chain release factor 1 [Neisseria meningitidis 053442] gi|189039981|sp|A9M1Q8|RF1_NEIM0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|161596087|gb|ABX73747.1| peptide chain release factor I [Neisseria meningitidis 053442] Length = 358 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGALDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|119383645|ref|YP_914701.1| peptide chain release factor 1 [Paracoccus denitrificans PD1222] gi|166223583|sp|A1B0G1|RF1_PARDP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119373412|gb|ABL69005.1| bacterial peptide chain release factor 1 (bRF-1) [Paracoccus denitrificans PD1222] Length = 351 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 191/355 (53%), Positives = 252/355 (70%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ + RF +E R++ P+ + ++ EYA + P++++I+ + +++ + Sbjct: 1 MLPEDRLIQIVERFEYLEARLNAGPAAEEIAAISREYAELKPVVAQIAQWRSVQEDIRQA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R+LAQ E+ + + LE+ + LLP+D D + ILEIR GTGG Sbjct: 61 QAMLA----DHEMRELAQDELSRLRAGLPALEHALRVALLPRDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL MY R+A + W+ ++L +D GG +E +A I G GVF+R+K+ESGV Sbjct: 117 EEAALFAGDLLDMYRRFAESQGWQFQMLELVRSDLGGVREAMARIEGEGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+DVDIP DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEEVDVDIPAADIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQHQNR AM VLRARLYD+ER R ER+A+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIVVTSSEKSQHQNRANAMAVLRARLYDMERSRADAERAADRKSQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY L+ ++QG I +I+ L QA + + E Sbjct: 297 SERIRTYNFPQGRMTDHRIGLTLYALDRIMQGEIGEIVEALAAHDQAARLAAQGE 351 >gi|13472970|ref|NP_104537.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099] gi|20139342|sp|Q98G93|RF1_RHILO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|14023718|dbj|BAB50323.1| peptide chain release factor 1 [Mesorhizobium loti MAFF303099] Length = 359 Score = 300 bits (769), Expect = 1e-79, Method: Composition-based stats. Identities = 218/356 (61%), Positives = 279/356 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ + RF +E +MS P+ DAY+K+ EYA + +++K+ + E+ Sbjct: 1 MVNLPRDRMDQVVKRFEMLEAQMSAGPAPDAYVKMASEYAELQDMVAKVRQLRSAEHEQA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D+E+R LA+ ++ +E+ I L+ +I LLLPKD DDK+ ILEIRAGT Sbjct: 61 DLEAMLADKGTDAEMRALAEADLPDVEERIEALQKDIQILLLPKDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA R W+ E +S+SD D GG+KEI+AT+SG+GVF+ +KFES Sbjct: 121 GGDEAALFAGDLFRMYERYAAERGWRFETVSASDGDAGGFKEIIATVSGKGVFAHLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGR+HTSAATVAVLPEA E+D++I EDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRIHTSAATVAVLPEAEEVDIEIRAEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGIMV +EKSQHQNR +AM++LRARLYD+ER + ERS +RK Q+GSG Sbjct: 241 DSAVRITHLPTGIMVVQAEKSQHQNRAKAMQILRARLYDLERSKADEERSESRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+I++ L+ HQ+K++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMMGELDEIVDALIADHQSKLLADIG 356 >gi|315122704|ref|YP_004063193.1| peptide chain release factor 1 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496106|gb|ADR52705.1| peptide chain release factor 1 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 357 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 311/357 (87%), Positives = 331/357 (92%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MVFLSHKQ+C+LKNRF+EIELRMSESPSVD YIKLTEEYAAISPIISKI IY++KK EEQ Sbjct: 1 MVFLSHKQVCNLKNRFSEIELRMSESPSVDVYIKLTEEYAAISPIISKIDIYEKKKGEEQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T+I D +SD IRDLA+ E+ +EKEI+ LE EI+ LLLPKDTDDDKSCILEIRAGT Sbjct: 61 DLRTIIDDQDSDLGIRDLAKAEIGEVEKEIKALEYEISCLLLPKDTDDDKSCILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALFVGDLFRMYERYA +KWKVE+LSSSDNDDGGYKEIVATISG GVF RMKFES Sbjct: 121 GGSEAALFVGDLFRMYERYATYQKWKVEILSSSDNDDGGYKEIVATISGNGVFYRMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGRVHTSAATVAVLPEA EIDV I EDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAEEIDVAIATEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMVTSSEKSQHQNRL+AMKVLRARLYD+ERKRMA+ERS NRK QIGSG Sbjct: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLQAMKVLRARLYDIERKRMAHERSENRKAQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGRITDHRINLTLYKLEYVLQGY+D+I+N LLTAHQAKMIGSASE Sbjct: 301 DRSERIRTYNFPQGRITDHRINLTLYKLEYVLQGYLDEIVNALLTAHQAKMIGSASE 357 >gi|78044074|ref|YP_361356.1| peptide chain release factor 1 [Carboxydothermus hydrogenoformans Z-2901] gi|119361519|sp|Q3A928|RF1_CARHZ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|77996189|gb|ABB15088.1| peptide chain release factor 1 [Carboxydothermus hydrogenoformans Z-2901] Length = 358 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 180/352 (51%), Positives = 246/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L+ ++ E+ +S+ + + + +A I I+ Y + +E +D Sbjct: 3 DKLDQLEEKYEELSRLISDPEVIADTQRWQGYVKAHAEIEEIVQVYREYKKTVKEIEDAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D + R+L Q E+ +++ ELE ++ LLLPKD +D+K+ I+EIRAG GG Sbjct: 63 RML-DEKLDPDFRELVQSELHDLKERREELEAKLKILLLPKDPNDEKNVIMEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA WKVE++ S D GG+KE++ TI G+GV+SRMKFESGVH Sbjct: 122 EAALFAGDLFRMYSKYADRMGWKVEIMDSHPTDLGGFKEVIFTIEGKGVYSRMKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++V+I D+RID ASG+GGQHVN T+SA Sbjct: 182 RVQRVPTTESGGRIHTSTATVAVLPEAEEVEVEINPNDLRIDVFCASGAGGQHVNKTESA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V EKSQH+N+ RAMK+LRARL D R+ E ++ RK Q+G+GDR Sbjct: 242 VRITHIPTGIVVTCQDEKSQHKNKERAMKILRARLLDKARQEQEAELASARKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF Q R+TDHRI LTL++L+ VL+G +D+II+ L+T QA+ + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTLHRLDAVLEGDLDEIIDALITTDQAERLKQ 353 >gi|260427219|ref|ZP_05781198.1| peptide chain release factor 1 [Citreicella sp. SE45] gi|260421711|gb|EEX14962.1| peptide chain release factor 1 [Citreicella sp. SE45] Length = 349 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 184/354 (51%), Positives = 249/354 (70%), Gaps = 6/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ ++ RF +E RM+E L EYA + P++ +I+ +++ + + + Sbjct: 1 MIPADRLQQIRERFEYLEARMAEGGG--DIAALGREYAELKPVVDQIAEWNRLQADLTEA 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E++ LA+ E+ A+ + E E + LLP+D D + ILEIR GTGG Sbjct: 59 EEMLA----DPEMKALAEEELPALRARLPEAEKALQLALLPRDAADARPAILEIRPGTGG 114 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RY+ R W+ EV+ D + GG KE+V I G VF+R+KFESGV Sbjct: 115 EEAALFAGDLARMYQRYSEARGWRWEVIEEQDTELGGLKELVVRIEGENVFARLKFESGV 174 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA +D+DI D+RIDTMR+SG+GGQHVNTTDS Sbjct: 175 HRVQRVPETESGGRIHTSAATVAVLPEAEAVDIDIASGDLRIDTMRSSGAGGQHVNTTDS 234 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM VLRARLYD+ER++ + R+++R+ Q+GSGDR Sbjct: 235 AVRITHLPTGLVVTSSEKSQHRNREIAMNVLRARLYDMERQKADDARASDRRAQVGSGDR 294 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRI LTLY+LE +L G +D+I++ L QA + Sbjct: 295 SERIRTYNFPQGRMTDHRIGLTLYRLEAILSGDLDEIVDALTANAQAAQLAEMG 348 >gi|119361511|sp|Q2KZZ3|RF1_BORA1 RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 360 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ +++ +D + +L+ E A + P++ + + + Sbjct: 1 MKSSMLGRLEQLAHRLIEVDALLADPDSAGDMDRFRRLSRERAELEPVVLAFNAFQSTQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++ +A+ E+ A + I LE E+ LLLP+D +D +S LEIR Sbjct: 61 DLATAQEMLA----DPEMKAMAEEEIKAARERIEVLEGELQVLLLPRDPNDGRSLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA + W+VE++S S ++ GGYKE++A I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYSRYAESQGWRVEIMSESPSELGGYKEVIARIDGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA E++ + D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAVMPEADEMNDIVINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDKELRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +L+G ++++ LL HQA+ + + Sbjct: 297 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQILEGDLNELTGALLAEHQAEQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|126736399|ref|ZP_01752141.1| peptide chain release factor 1 [Roseobacter sp. CCS2] gi|126714220|gb|EBA11089.1| peptide chain release factor 1 [Roseobacter sp. CCS2] Length = 351 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 184/354 (51%), Positives = 255/354 (72%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ +I L +RF +E +M++ + + L +EYA + P++ ++ Y Q+ + Sbjct: 1 MIAADRIEQLIDRFQFLEAKMADGSAGNEIAALGKEYADLRPVVETVTAYKDLVQQIDEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+++LA+ E+ ++ + E+++ LLPKD D + +LEIR GTGG Sbjct: 61 EAMLA----DPEMKELAEAELPDLKAALAASEHDVQLALLPKDAADARPALLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA LF DL RMY+RYA + W+ E+L S ++ GG KE+VA I G GVF++MK+ESGV Sbjct: 117 DEAGLFAADLLRMYQRYAEGQGWRFEILEESLSELGGVKEVVARIVGDGVFAKMKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D++I D+RIDTMRASGSGGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIEINANDLRIDTMRASGSGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRI HIPTG++V SSEKSQH+NR AM+VL+ RL+D+ER+++ +ERSA+RK Q+GSGDR Sbjct: 237 AVRILHIPTGMIVVSSEKSQHRNREIAMQVLKTRLFDLERQKVDDERSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L V+QG +++I+N L QA ++ Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYSLNQVMQGDLEEIVNALQADAQATLLAEMG 350 >gi|254805442|ref|YP_003083663.1| peptide chain release factor 1 [Neisseria meningitidis alpha14] gi|254668984|emb|CBA07320.1| peptide chain release factor 1 [Neisseria meningitidis alpha14] Length = 358 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|293398675|ref|ZP_06642853.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62] gi|291611146|gb|EFF40243.1| peptide chain release factor 1 [Neisseria gonorrhoeae F62] Length = 358 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGGEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|254674224|emb|CBA10008.1| peptide chain release factor 1 [Neisseria meningitidis alpha275] Length = 358 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKDTDDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGALDTELQKLLLPKDTDDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|291278533|ref|YP_003495368.1| peptide chain release factor RF-1 [Deferribacter desulfuricans SSM1] gi|290753235|dbj|BAI79612.1| peptide chain release factor RF-1 [Deferribacter desulfuricans SSM1] Length = 355 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 251/353 (71%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ ++ + ++S+ + Y ++ +E+A + PI+ K Y + ++ ++ Sbjct: 4 KLEEVLEKYNILTEKLSDPNIMSDNKTYQQIAKEHAELKPIVEKYQEYKKINEDIEEAKQ 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+++LA++E+ ++++ ++ENE+ LL+PKD D+K+ LEIRAGTGG E Sbjct: 64 IL--ESGDKELKELAEMELEEGKEKLEKIENELKLLLVPKDPYDEKNIYLEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF DL RMY RYA +WK E++ +D GGYKE+V I G+G +SR+KFE G HR Sbjct: 122 ATLFAADLLRMYMRYAEKHRWKTEIVDYNDTGVGGYKEVVLLIKGKGAYSRLKFEGGGHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GR+HTSA TVAVLPEA +++V+I D+RID RASG+GGQHVNTTDSAV Sbjct: 182 VQRIPVTESGGRIHTSACTVAVLPEADDVEVEIDPSDLRIDVFRASGAGGQHVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ +N+ +AMK+L+A++ ++E ++ ++NRKLQ+GSGDRS Sbjct: 242 RITHIPTGIVVSCQDERSQIKNKEKAMKLLKAKILEMEIRKQQEAIASNRKLQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRINLTLY L+ V++G +D+II+ L+ QA+ + Sbjct: 302 ERIRTYNFPQNRVTDHRINLTLYNLDQVMEGELDEIIDALIAYDQAEKLKEIG 354 >gi|308389808|gb|ADO32128.1| peptide chain release factor I [Neisseria meningitidis alpha710] gi|325130724|gb|EGC53462.1| peptide chain release factor 1 [Neisseria meningitidis OX99.30304] gi|325136665|gb|EGC59265.1| peptide chain release factor 1 [Neisseria meningitidis M0579] gi|325201657|gb|ADY97111.1| peptide chain release factor 1 [Neisseria meningitidis M01-240149] gi|325208608|gb|ADZ04060.1| peptide chain release factor 1 [Neisseria meningitidis NZ-05/33] Length = 358 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|114704325|ref|ZP_01437233.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506] gi|114539110|gb|EAU42230.1| peptide chain release factor 1 [Fulvimarina pelagi HTCC2506] Length = 359 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 209/356 (58%), Positives = 275/356 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L + ++ RF +E+ M++ P + Y KL EYA++ +++ I + + E Sbjct: 1 MANLPTAALDEILARFTRLEMDMAKGPDHEVYSKLAAEYASLEEVVAAIREFRALETELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +++ D SD E+R+LA +EV + L I LLLPKD+ D+K ILEIRAGT Sbjct: 61 DAESLLDDPESDREMRNLAGVEVDDLRSRREGLRGRIQILLLPKDSADEKGAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEA LF GDL+RMY+RYA L +WKVE+LS+S+ + GG+KE++A I G GVFSR+KFES Sbjct: 121 GGSEAGLFAGDLYRMYQRYAELNRWKVELLSASEGEVGGFKEVIAAIKGNGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPEA +ID+D+ EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETESGGRIHTSAATVAVLPEAEDIDIDVRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+VTSSEKSQHQNR +AM+VL+A+LYD+ER++ +ERSA RK Q+GSG Sbjct: 241 DSAVRITHLPTGIVVTSSEKSQHQNRAQAMQVLKAKLYDMERQKYDDERSAARKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G ++++++ L+ HQAK++ + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDKVIEGEMEELVDALVADHQAKLLAAVG 356 >gi|292669720|ref|ZP_06603146.1| peptide chain release factor RF1 [Selenomonas noxia ATCC 43541] gi|292648517|gb|EFF66489.1| peptide chain release factor RF1 [Selenomonas noxia ATCC 43541] Length = 354 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 173/358 (48%), Positives = 251/358 (70%), Gaps = 8/358 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ + +++ E+E +S+ ++ + + T E+AA++PI+ S Y Q Sbjct: 1 MLS--KLNAVADKYRELEALLSDPAVMADMEKWQRYTREHAALTPIVEAYSAYQQALLTI 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ ++ + D+E++ + + E+ E+ +L E+ LLLP+D +DDK+ I+EIR G Sbjct: 59 EEDQGLLAEA--DAEMKAMLEEEIAEAEERRDQLAQELPILLLPRDPNDDKNVIVEIRGG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF LFRMY RYA + W+ E+LSS+ + GG+KEI ++G G +SR+K+E Sbjct: 117 VGGEEAALFAASLFRMYARYAERQGWRTEILSSNPTEIGGFKEISFLVNGAGAYSRLKYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPEA +++V I D+RIDT ASG+GGQ+VN Sbjct: 177 SGTHRVQRIPVTESGGRIHTSAVTVAVLPEAEDVEVTIDPNDLRIDTYCASGAGGQYVNR 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T++A+RITHIP+GI+V EKSQ +NR +AMKVLRARLYD R+ A+ +A+R+ Q+G Sbjct: 237 TETAIRITHIPSGIVVQCQDEKSQLKNREKAMKVLRARLYDRARQEQADAVAADRRSQVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRI LTLYK++ VL G +D+I+ L+TA QA+ + + Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRIGLTLYKIDAVLDGELDEILAGLITADQAERLKQVN 354 >gi|158321600|ref|YP_001514107.1| peptide chain release factor 1 [Alkaliphilus oremlandii OhILAs] gi|166977358|sp|A8MJX9|RF1_ALKOO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|158141799|gb|ABW20111.1| peptide chain release factor 1 [Alkaliphilus oremlandii OhILAs] Length = 357 Score = 300 bits (768), Expect = 2e-79, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 250/356 (70%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L+ ++ ++ ++SE ++ + KL +E++ + I+ K Y + +Q D Sbjct: 1 MLDKLAFLEEKYEDLSEKISEPEIINDQPQWKKLVKEHSDLEEIVMKYREYKKTEQGLND 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D +D E R++A++E+ +E++I LE E+ LLLPKD +DDK I+EIRAG G Sbjct: 61 AKEILRDKTADEEFREMAKMEIAELEEKIEVLEGELKILLLPKDPNDDKDVIVEIRAGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DLFRMY RYA WKVE++S++D GGYKE++ I G G +SR+K+ESG Sbjct: 121 GDEAGLFAADLFRMYTRYAENVGWKVEMMSANDTGIGGYKEVIFMIKGHGAYSRLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE+ GR+HTS TVAVLPEA ++D ++ + DIR+D R+SG+GGQ VNTTD Sbjct: 181 VHRVQRIPSTESGGRIHTSTITVAVLPEADDVDFELDMNDIRVDVFRSSGNGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG +V EKSQ +N+ +A+K+LRARL DV + E + +RK Q+G+G Sbjct: 241 SAVRVTHIPTGTVVSCQDEKSQLKNKEKALKILRARLLDVLIQEQQAEIAQDRKSQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRITDHRIN+TLY+L+ L G I ++I+ L+T QA+ + + Sbjct: 301 DRSERIRTYNFPQGRITDHRINVTLYRLDSFLNGDIQEMIDALITTDQAEKLKEVN 356 >gi|326203238|ref|ZP_08193103.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782] gi|325986496|gb|EGD47327.1| peptide chain release factor 1 [Clostridium papyrosolvens DSM 2782] Length = 359 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 258/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++R+ EI ++S+ ++ Y K +EY+ + I+ K Y + +E ++ Sbjct: 3 DKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKEYSDLEEIVQKYREYTKVSKEIEEAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D + R++ Q E ++++ ++ ++ L++PKD +DDK+ I+EIR G GG Sbjct: 63 ELL-DQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFR +YA ++WK E++ S+ + GG+KE+V +I G+G +SR+KFESGVH Sbjct: 122 EAALFAGVLFRAMTKYAEKKRWKYEIMDSNPTELGGFKEVVFSIEGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+SGR+HTS TVAVLPE E+DVDI D+RIDT RASG+GGQH+N TDSA Sbjct: 182 RVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+P+GI+V E+SQH+N+ RAMK+LR++LY++ +++ NE + +RK Q+G+GDR Sbjct: 242 IRITHMPSGIVVSCQDERSQHKNKDRAMKILRSKLYEIAQEQQINEVAQDRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRINLTLYKLE VL G +D++I+ L+T Q++ +GS ++ Sbjct: 302 SERIRTYNYPQGRVTDHRINLTLYKLEQVLDGDLDELIDALITTDQSEKLGSGAD 356 >gi|110635328|ref|YP_675536.1| peptide chain release factor 1 [Mesorhizobium sp. BNC1] gi|119361558|sp|Q11E04|RF1_MESSB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110286312|gb|ABG64371.1| bacterial peptide chain release factor 1 (bRF-1) [Chelativorans sp. BNC1] Length = 359 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 221/356 (62%), Positives = 286/356 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L +++ + RF IE +M+ PS DAY+KL EY+ + + + I + + E + Sbjct: 1 MAELPRERMDQVLKRFELIETQMAAGPSPDAYVKLASEYSELQEVANSIRALRKAEAELE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T++ D + D EIR+LA+I+ +E + +++ ++ LLLPKD D+K+ ILEIRAGT Sbjct: 61 DLDTMLADKSIDREIRELAEIDREEVESRVEDMQQKLQVLLLPKDEADEKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYA+ R W+VEV+S+S+ + GGYKEI+A+++GRGVFSR+KFES Sbjct: 121 GGDEAALFAGDLFRMYERYASERGWRVEVVSASEGEAGGYKEIIASVTGRGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEA GR+HTSAATVAVLPEA +IDVDI EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPATEAQGRIHTSAATVAVLPEAEDIDVDIKPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGIMV S+EKSQHQNR RAM++LRARL+D+ER R ANERS R+LQ+G+G Sbjct: 241 DSAVRITHLPTGIMVVSAEKSQHQNRARAMQILRARLFDMERSRAANERSEARRLQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++I+ L+ HQ+K++ + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDEVIDALIADHQSKLLAAEG 356 >gi|261363763|ref|ZP_05976646.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996] gi|288568341|gb|EFC89901.1| peptide chain release factor 1 [Neisseria mucosa ATCC 25996] Length = 358 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|325204648|gb|ADZ00102.1| peptide chain release factor 1 [Neisseria meningitidis M01-240355] Length = 358 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKINTLDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPVDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|309782949|ref|ZP_07677669.1| peptide chain release factor 1 [Ralstonia sp. 5_7_47FAA] gi|308918373|gb|EFP64050.1| peptide chain release factor 1 [Ralstonia sp. 5_7_47FAA] Length = 360 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI ++ ++D Y KLT E+A + P++++ + + Q ++ Sbjct: 1 MKPSMLSKLDQLAERIVEINALLAREDATANLDQYRKLTREHAELEPVVAQFAAWKQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D +++ A+ E+ A + + LE E+ LLLPKD +D ++ +EIR Sbjct: 61 DIATAQELAA----DPDMKAFAEDELRAARERMESLEGELQRLLLPKDPNDHRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVA++PEA D+ I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAIMPEADALADIQINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N T+SAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK Sbjct: 237 INKTESAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G ID+++ L HQA+ + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDAIMDGDIDELVGALAAEHQAEQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|297618446|ref|YP_003703605.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM 12680] gi|297146283|gb|ADI03040.1| peptide chain release factor 1 [Syntrophothermus lipocalidus DSM 12680] Length = 355 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 249/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ +F EI +S+ + + K + +A +S ++ Y + +Q++ D Sbjct: 1 MLEKLDKLEEKFEEITALLSQPEVIADQARFQKYAKAHAELSELVDTYREYKRVRQDKTD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D ++R++ E+ + + +LE + LLLPKD +D+K+ I+EIRAGTG Sbjct: 61 ARAMLEEEEDD-DLRNMLVEEIRVLSDKEEKLEQRLKLLLLPKDPNDEKNVIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY RYA + WKV+++ +S +D GG+KEI+ + GRG +S++KFESG Sbjct: 120 GEEAALFAADLFRMYSRYAEKQGWKVDIMDTSYSDLGGFKEIIFIVEGRGAYSKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTSAATVAVLPEA E++VDI D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRIPVTESGGRIHTSAATVAVLPEAEEVEVDINPNDLRIDVFCSSGPGGQSVNTTQ 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V EKSQH+N+ +AM+VLR+RL +++R E + R+ Q+GSG Sbjct: 240 SAVRITHLPTGIVVSCQDEKSQHKNKDKAMRVLRSRLLELKRAEHEAEIADARRSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTL+KL+ VL+G +D+II L+T QA+ + Sbjct: 300 DRSERIRTYNFPQGRVTDHRINLTLHKLDVVLEGELDEIIEALITHDQAEKMRQVE 355 >gi|121635327|ref|YP_975572.1| peptide chain release factor 1 [Neisseria meningitidis FAM18] gi|166223577|sp|A1KV95|RF1_NEIMF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120867033|emb|CAM10796.1| peptide chain release factor I [Neisseria meningitidis FAM18] gi|325132818|gb|EGC55498.1| peptide chain release factor 1 [Neisseria meningitidis M6190] gi|325138721|gb|EGC61273.1| peptide chain release factor 1 [Neisseria meningitidis ES14902] gi|325198784|gb|ADY94240.1| peptide chain release factor 1 [Neisseria meningitidis G2136] Length = 358 Score = 300 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|319410939|emb|CBY91334.1| peptide chain release factor I (RF-1) [Neisseria meningitidis WUE 2594] Length = 358 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|187476811|ref|YP_784835.1| peptide chain release factor 1 [Bordetella avium 197N] gi|115421397|emb|CAJ47902.1| peptide chain release factor 1 [Bordetella avium 197N] Length = 356 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 246/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L +R E++ +++ +D + +L+ E A + P++ + + + + Sbjct: 4 RLEQLAHRLIEVDALLADPDSAGDMDRFRRLSRERAELEPVVLAFNAFQSTQADLATAQE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++ +A+ E+ A + I LE E+ LLLP+D +D +S LEIRAGTGG E Sbjct: 64 MLA----DPEMKAMAEEEIKAARERIEVLEGELQVLLLPRDPNDGRSLFLEIRAGTGGDE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +ALF GDL RMY RYA + W+VE++S S ++ GGYKE++A I G G + R+KFESG HR Sbjct: 120 SALFSGDLLRMYSRYAESQGWRVEIMSESPSELGGYKEVIARIDGDGAYGRLKFESGAHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATEA GR+HTSA TVAV+PEA E++ + D+RIDT RASG+GGQH+N TDSA Sbjct: 180 VQRVPATEAQGRIHTSACTVAVMPEADEMNDIVINPADLRIDTFRASGAGGQHINKTDSA 239 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V ++SQH+N+ RAM+VL ARL D E + ++ +A RK +GSGDR Sbjct: 240 VRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDKELRERQSKEAAERKSLVGSGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRINLTLYKL+ +L+G ++++ LL HQA+ + + E Sbjct: 300 SERIRTYNYPQGRVTDHRINLTLYKLQQILEGDLNELTGALLAEHQAEQLAALGE 354 >gi|225075789|ref|ZP_03718988.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens NRL30031/H210] gi|224952871|gb|EEG34080.1| hypothetical protein NEIFLAOT_00805 [Neisseria flavescens NRL30031/H210] Length = 358 Score = 299 bits (765), Expect = 4e-79, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYQLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|194099102|ref|YP_002002187.1| peptide chain release factor 1 [Neisseria gonorrhoeae NCCP11945] gi|239999408|ref|ZP_04719332.1| peptide chain release factor 1 [Neisseria gonorrhoeae 35/02] gi|240014585|ref|ZP_04721498.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI18] gi|240081334|ref|ZP_04725877.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA19] gi|240113543|ref|ZP_04728033.1| peptide chain release factor 1 [Neisseria gonorrhoeae MS11] gi|240116107|ref|ZP_04730169.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID18] gi|240121107|ref|ZP_04734069.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID24-1] gi|240123936|ref|ZP_04736892.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID332] gi|240126136|ref|ZP_04739022.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-92-679] gi|240128613|ref|ZP_04741274.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-93-1035] gi|254494127|ref|ZP_05107298.1| peptide chain release factor 1 [Neisseria gonorrhoeae 1291] gi|260440083|ref|ZP_05793899.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI2] gi|268595228|ref|ZP_06129395.1| peptide chain release factor 1 [Neisseria gonorrhoeae 35/02] gi|268597436|ref|ZP_06131603.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA19] gi|268599608|ref|ZP_06133775.1| peptide chain release factor 1 [Neisseria gonorrhoeae MS11] gi|268601773|ref|ZP_06135940.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID18] gi|268682561|ref|ZP_06149423.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID332] gi|268684722|ref|ZP_06151584.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-92-679] gi|268687001|ref|ZP_06153863.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-93-1035] gi|291043371|ref|ZP_06569094.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI2] gi|238690206|sp|B4RN52|RF1_NEIG2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|193934392|gb|ACF30216.1| peptide chain release factor 1 [Neisseria gonorrhoeae NCCP11945] gi|226513167|gb|EEH62512.1| peptide chain release factor 1 [Neisseria gonorrhoeae 1291] gi|268548617|gb|EEZ44035.1| peptide chain release factor 1 [Neisseria gonorrhoeae 35/02] gi|268551224|gb|EEZ46243.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA19] gi|268583739|gb|EEZ48415.1| peptide chain release factor 1 [Neisseria gonorrhoeae MS11] gi|268585904|gb|EEZ50580.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID18] gi|268622845|gb|EEZ55245.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID332] gi|268625006|gb|EEZ57406.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-92-679] gi|268627285|gb|EEZ59685.1| peptide chain release factor 1 [Neisseria gonorrhoeae SK-93-1035] gi|291012977|gb|EFE04960.1| peptide chain release factor 1 [Neisseria gonorrhoeae DGI2] gi|317164656|gb|ADV08197.1| peptide chain release factor 1 [Neisseria gonorrhoeae TCDC-NG08107] Length = 358 Score = 299 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGGEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+R DT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRTDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|304386835|ref|ZP_07369099.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC 13091] gi|304339089|gb|EFM05179.1| peptide chain release factor RF1 [Neisseria meningitidis ATCC 13091] Length = 358 Score = 299 bits (764), Expect = 5e-79, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATADMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|33595093|ref|NP_882736.1| peptide chain release factor 1 [Bordetella parapertussis 12822] gi|46576758|sp|Q7WCE3|RF1_BORPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33565170|emb|CAE35966.1| peptide chain release factor 1 [Bordetella parapertussis] Length = 360 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 172/361 (47%), Positives = 243/361 (67%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ ++E +D + KL+ E A + P++ + + + Sbjct: 1 MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAELEPVVEAFNAFLGVEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD +++ +A+ E+ I E+E + LLLP+D DD +S LEIR Sbjct: 61 DVATAQEML----SDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRDPDDGRSLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+VE++S S+++ GGYKE++ I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVIVRIDGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA + I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKEMRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G +D++ LL HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDELTGALLAEHQAEQLAAL 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|238927406|ref|ZP_04659166.1| peptide chain release factor RF1 [Selenomonas flueggei ATCC 43531] gi|238884688|gb|EEQ48326.1| peptide chain release factor RF1 [Selenomonas flueggei ATCC 43531] Length = 354 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 171/356 (48%), Positives = 245/356 (68%), Gaps = 8/356 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ + +++ E+E +S+ + + + T E+AA++PI+ Y + Sbjct: 1 MLS--KLAAVADKYRELETLLSDPSVMADMEAWQRYTREHAALTPIVEAYQAYRRALAII 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D+E++ + E+ A E E L E+ LLLP+D +D+K+ I+EIR G Sbjct: 59 DEDKEMLSEA--DAEMKAMLTEEIAAAEAERDRLAAELPILLLPRDPNDEKNVIVEIRGG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF LFRMY RYA + W+ EVLSS+ + GG+KEI +SG +S++K+E Sbjct: 117 VGGEEAALFAASLFRMYVRYAERQGWRTEVLSSNPTEIGGFKEITFLVSGTAAYSKLKYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPEA E++V I D+RIDT ASG+GGQ+VN Sbjct: 177 SGTHRVQRIPVTESGGRIHTSAVTVAVLPEAEEVEVTIDPNDLRIDTYCASGAGGQYVNR 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T++A+RITHIPTGI+V EKSQ +NR +AMKVLRARLYD ++ A+ +A+R+ Q+G Sbjct: 237 TETAIRITHIPTGIVVQCQDEKSQLKNREKAMKVLRARLYDRAQQEQADAVAADRRSQVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SGDRSERIRTYNF QGR+TDHRI LTLYK++ V+ G +D+++ L+TA QA+ + Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRIGLTLYKIDAVMDGELDELLAGLITADQAQRLKQ 352 >gi|241664381|ref|YP_002982741.1| peptide chain release factor 1 [Ralstonia pickettii 12D] gi|240866408|gb|ACS64069.1| peptide chain release factor 1 [Ralstonia pickettii 12D] Length = 360 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI ++ ++D Y KLT E+A + P++++ + + + ++ Sbjct: 1 MKPSMLSKLDQLAERIVEINALLAREDATANLDQYRKLTREHAELEPVVAQFAAWKRAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D +++ + E+ A + + LE E+ LLLPK+ +D ++ +EIR Sbjct: 61 DIATAQELAA----DPDMKAFGEDELRAARERMESLEGELQRLLLPKNPNDHRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVA++PEA D+ I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAIMPEADALADIQINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA+ + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDAIMDGDLDELVGALAAEHQAEQLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|296134391|ref|YP_003641638.1| peptide chain release factor 1 [Thermincola sp. JR] gi|296032969|gb|ADG83737.1| peptide chain release factor 1 [Thermincola potens JR] Length = 355 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 174/351 (49%), Positives = 246/351 (70%), Gaps = 5/351 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+ +++ + + + + +AA++ I+S Y + + Sbjct: 4 KLQSLEEKYEELSKLIADPEIIADQSQWQRHAKAHAALTEIVSTYREYKSVLKGIDEAKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D DSE R++ + E+ ++++ +L ++ LLLPKD +D+K+ I+EIR G GG E Sbjct: 64 LLKDQ-LDSEFREMVEQELAELKEKEEKLSVQLKILLLPKDPNDEKNVIMEIRGGAGGEE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA + WK E+LSS+ D GG+KEI+ I G+G +SR+KFESGVHR Sbjct: 123 AALFAGDLFRMYSRYAEAKGWKTEILSSNPTDIGGFKEIIFLIEGQGAYSRLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS TVAVLPEA E+DVDI D+RID +SG GGQ VNTT SAV Sbjct: 183 VQRVPTTESSGRIHTSTVTVAVLPEAEEVDVDIDPNDLRIDVFCSSGPGGQSVNTTQSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V EKSQH+N+ +A++VLRARL D ++ N+ ++ RK Q+G+GDRS Sbjct: 243 RVTHIPTGIVVSCQDEKSQHKNKEKALRVLRARLLDKAQEEQRNQLASTRKSQVGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ERIRTYNF QGR+TDHRI LTL+KL+ VL+G +D+II L+T QA+ + Sbjct: 303 ERIRTYNFPQGRVTDHRIGLTLHKLDMVLEGDLDEIIEALITTDQAEKLKE 353 >gi|16125109|ref|NP_419673.1| peptide chain release factor 1 [Caulobacter crescentus CB15] gi|13422113|gb|AAK22841.1| peptide chain release factor 1 [Caulobacter crescentus CB15] Length = 385 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 195/355 (54%), Positives = 265/355 (74%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF E+E RM + +KL++E+A + P+ + + E +L Sbjct: 32 LPQARLDQVLDRFREVEARMGAATDGAEIVKLSKEHAELRPVAEAVERLAKLSAERAELD 91 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + SD E+ ++ + E+ A+++++ +E E+ +L PKD D++ S ILE+RAGTGG Sbjct: 92 VMA----SDPEMAEMVRDEIQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGGD 147 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY+RYA + W+VE+ S S+ + GG+KEIVA+I+G GVF R+KFESGVH Sbjct: 148 EAALFAGDLFRMYQRYAQTQGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGVH 207 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTSAATVAVLPEA +++++I D+RIDT R+SG+GGQHVN TDSA Sbjct: 208 RVQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSA 267 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++VTSSEKSQHQNR RAMK L+ARLYD++R+ + + RS RK Q+GSGDRS Sbjct: 268 VRITHLPTGVVVTSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRS 327 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY L +++G +DD+INPL+ QA+ + S E Sbjct: 328 ERIRTYNFPQGRVTDHRINLTLYNLARIMEGDALDDVINPLIAEDQAERLASLEE 382 >gi|218768706|ref|YP_002343218.1| peptide chain release factor 1 [Neisseria meningitidis Z2491] gi|20139350|sp|Q9JT75|RF1_NEIMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|121052714|emb|CAM09057.1| peptide chain release factor I [Neisseria meningitidis Z2491] Length = 358 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|33591871|ref|NP_879515.1| peptide chain release factor 1 [Bordetella pertussis Tohama I] gi|33599373|ref|NP_886933.1| peptide chain release factor 1 [Bordetella bronchiseptica RB50] gi|46576754|sp|Q7W023|RF1_BORPE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46576762|sp|Q7WQE9|RF1_BORBR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33566969|emb|CAE30882.1| peptide chain release factor 1 [Bordetella bronchiseptica RB50] gi|33571515|emb|CAE40989.1| peptide chain release factor 1 [Bordetella pertussis Tohama I] gi|332381288|gb|AEE66135.1| peptide chain release factor 1 [Bordetella pertussis CS] Length = 360 Score = 299 bits (764), Expect = 6e-79, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 244/361 (67%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ ++E +D + KL+ E A + P++ + + + Sbjct: 1 MKPSMRSRLEQLAHRLIEVDALLAEPETAADMDRFRKLSRERAELEPVVEAFNAFLGVEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD +++ +A+ E+ I E+E + LLLP+D DD +S LEIR Sbjct: 61 DVATAQEML----SDPDMKAMAEDEIKTGRARIEEMEAALQLLLLPRDPDDGRSLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+VE++S S+++ GGYKE++A I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYTRYAETRGWRVEIMSESESELGGYKEVIARIDGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA + I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHVPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKEMRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G +D++ LL HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGDLDELTGALLAEHQAEQLAAL 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|262274708|ref|ZP_06052519.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886] gi|262221271|gb|EEY72585.1| peptide chain release factor 1 [Grimontia hollisae CIP 101886] Length = 362 Score = 299 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 252/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + +I S Y Q + Sbjct: 1 MKPSILAKLEALSERYEEVQHLLGDPSVISDQDRFRSLSKEYSQLEEVIKCFSAYKQAES 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + D E+R++AQ EV A +++I L +E+ LLLPKD +D+++C LEIR Sbjct: 61 DLEAAQEMANE--DDPEMREMAQEEVKAAKEDIERLTDELQVLLLPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY R+A + W+VEV++++ + GGYKE++A ++G G + MK Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRFAESKGWRVEVINANHGEHGGYKEMIAKVNGDGAYGVMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAILPEIPEAEIPEINPADLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL ARL E ++ A E+++ R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARLIKAEEEKRAAEQASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L+ V++G +D +I P++ QA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLDEVMEGDLDSLIQPIIHEFQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|254472406|ref|ZP_05085806.1| peptide chain release factor 1 [Pseudovibrio sp. JE062] gi|211958689|gb|EEA93889.1| peptide chain release factor 1 [Pseudovibrio sp. JE062] Length = 357 Score = 299 bits (764), Expect = 7e-79, Method: Composition-based stats. Identities = 198/356 (55%), Positives = 263/356 (73%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ +++ L RF IE M+ P+ D YIKL+ +YA + PI+ I + + + + Sbjct: 1 MLAPEKLDTLLARFEGIEAEMASGPAPDVYIKLSRDYAELEPIVMSIRELRKAEGDLEGA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +SD+E+++LAQ+E + + EL ++ LLPKD D ILE+RAGTGG Sbjct: 61 EALLSDPDSDAEMKELAQLERDELTGVVEELTQKVRIGLLPKDKADSHDVILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+R+A WKVEV+SSS+ D GG+KEIVA ++G+ VF ++KFESGV Sbjct: 121 DEAALFAGDLFRMYQRFADNNGWKVEVMSSSEGDMGGFKEIVAAVTGQEVFGKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLP+A E+DVDI D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESGGRIHTSAATVAVLPQAEEVDVDINPADLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTGI+V E+SQH+N+ RAMK+LRA++YDVER+R ANER+ R++Q+GSGD Sbjct: 241 AVRITHNPTGIVVAVQDERSQHKNKDRAMKLLRAKIYDVERERAANERTEARRVQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRI LTLYKL+ ++ G ++I+ L HQA ++ + Sbjct: 301 RSERIRTYNFPQGRVTDHRIGLTLYKLDQMMTGEATGEVIDALTMDHQANLLAAEG 356 >gi|32033818|ref|ZP_00134103.1| COG0216: Protein chain release factor A [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249197|ref|ZP_07531194.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307260449|ref|ZP_07542144.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306858721|gb|EFM90780.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306869852|gb|EFN01634.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 360 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + + ++ + ++EY+ + +++ + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDPSVINDQDKFRAYSKEYSQLEEVVTTFNRWKKLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQILL----DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|74318511|ref|YP_316251.1| peptide chain release factor 1 [Thiobacillus denitrificans ATCC 25259] gi|119361634|sp|Q3SG10|RF1_THIDA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|74058006|gb|AAZ98446.1| peptide chain release factor 1 [Thiobacillus denitrificans ATCC 25259] Length = 360 Score = 298 bits (763), Expect = 7e-79, Method: Composition-based stats. Identities = 178/361 (49%), Positives = 249/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ R E++ +++ +D+Y KLT E+A +SP++ Y Q + Sbjct: 1 MKATLADKLARADERLEELDALLAQPEVAADMDSYRKLTREHAELSPVVGLYRQYKQVEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +++ ++ D+++R+LA+ E+ I ELENE+ LLP+D +D+++ LEIR Sbjct: 61 DQKTAQEMLA----DADMRELAEAELADGAARITELENELQTALLPRDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF G+L RMY RYA ++WKVE++S S + GGYKE++ I G G +SR+K Sbjct: 117 AGTGGDESALFAGNLLRMYTRYAERQRWKVEIVSESPGEVGGYKEVIVRIVGEGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEAAE+ +VDI D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPEAAEVGEVDINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+NR +AM VL ARL D E + ++ RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNRAQAMSVLAARLKDREIQAQQASEASTRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGRITDHRINLTLYK++ V+ G + ++++ L HQA + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRITDHRINLTLYKIDAVMDGDLGELLDALAAEHQAAQLATL 356 Query: 356 S 356 S Sbjct: 357 S 357 >gi|307244800|ref|ZP_07526899.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253754|ref|ZP_07535608.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258211|ref|ZP_07539954.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854245|gb|EFM86451.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863238|gb|EFM95178.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867671|gb|EFM99516.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 360 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + + ++ + ++EY+ + +++ + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDPSVINDQDKFRAYSKEYSQLEEVVTTFNRWKKLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQILL----DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|163743155|ref|ZP_02150537.1| peptide chain release factor 1 [Phaeobacter gallaeciensis 2.10] gi|161383572|gb|EDQ07959.1| peptide chain release factor 1 [Phaeobacter gallaeciensis 2.10] Length = 351 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 183/355 (51%), Positives = 252/355 (70%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E M+E + L +EY+ + P+ +IS Y + + ++ Sbjct: 1 MIPEDRLEQILQRFQYLEAAMAEGVAGADIAALAKEYSDLRPVAEQISAYRRLLSDLEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++ +LA+ E+ + + E E+ + LLP+D D + +LEIR GTGG Sbjct: 61 EQMLA----DPDMAELAEEELPQLRAALPEAEHALQLALLPRDEADARPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W +E++ + GG KE+VA + G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWGIEIIEEQTTELGGLKEVVAHVKGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPVTESGGRIHTSAATVAVLPEAEDVDLRIDPGDLRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+V SSEKSQH+NR AM+V+R RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHIPTGIIVVSSEKSQHRNREIAMQVMRTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++QG +D+II+ L QA+++ + Sbjct: 297 SERIRTYNFPQGRMSDHRINLTLYKLDQIMQGDLDEIIDALTADDQARLLAEMGQ 351 >gi|59801687|ref|YP_208399.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA 1090] gi|240017030|ref|ZP_04723570.1| peptide chain release factor 1 [Neisseria gonorrhoeae FA6140] gi|240118391|ref|ZP_04732453.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1] gi|268604103|ref|ZP_06138270.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1] gi|75432438|sp|Q5F750|RF1_NEIG1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|59718582|gb|AAW89987.1| putative peptide chain release factor I [Neisseria gonorrhoeae FA 1090] gi|268588234|gb|EEZ52910.1| peptide chain release factor 1 [Neisseria gonorrhoeae PID1] Length = 358 Score = 298 bits (763), Expect = 8e-79, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQPEATSDMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+R DT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRTDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREVQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|56476056|ref|YP_157645.1| peptide chain release factor 1 [Aromatoleum aromaticum EbN1] gi|81598974|sp|Q5P7G7|RF1_AZOSE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56312099|emb|CAI06744.1| peptide chain release factor 1 (RF-1) [Aromatoleum aromaticum EbN1] Length = 359 Score = 298 bits (763), Expect = 9e-79, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 244/361 (67%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R AE++ +S +D + L E A I P+++ Y Q + Sbjct: 1 MKQSIRDKLELLTHRLAELDRELSSGDAVRDMDGFRSLGRERAEIEPVVALYGAYRQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+R+LA+ E+ ++ LE E+ LLP D D+++ LE+R Sbjct: 61 DCESARAMLA----DAEMRELAESELETGAVRLQALEAELQCALLPCDPSDERNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA+LF GDL RMY RYA ++WKVE++SSS +D GGYKE++ I+G G +S++K Sbjct: 117 AGTGGDEASLFAGDLLRMYTRYAERQRWKVEIVSSSPSDLGGYKEVILRIAGAGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQR+P TE GR+HTSA TVAV+PEA E++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRIPVTETQGRIHTSACTVAVMPEADEVEAVNINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+NR +AM VL AR+ D + + +A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDDRSQHRNRAQAMSVLAARIQDRQLREQQAREAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V+QG +D++++ L HQA + + Sbjct: 297 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDAVMQGDLDELVDALTREHQADQLAAL 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|190151400|ref|YP_001969925.1| peptide chain release factor 1 (RF-1) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|303250479|ref|ZP_07336676.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251821|ref|ZP_07337992.1| Peptide chain release factor 1 (RF-1) [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249121|ref|ZP_07531128.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307251520|ref|ZP_07533427.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256019|ref|ZP_07537807.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|307262579|ref|ZP_07544210.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|238692365|sp|B3GZJ0|RF1_ACTP7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189916531|gb|ACE62783.1| Peptide chain release factor 1 (RF-1) [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|302649251|gb|EFL79436.1| Peptide chain release factor 1 (RF-1) [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650467|gb|EFL80626.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854409|gb|EFM86605.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306860984|gb|EFM92990.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865441|gb|EFM97336.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306872077|gb|EFN03790.1| Peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 360 Score = 298 bits (762), Expect = 9e-79, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + + ++ + ++EY+ + +++ + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDPSVINDQDKFRAYSKEYSQLEEVVTTFNRWKKLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++++A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQILL----DDPDMKEMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPTDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|163739713|ref|ZP_02147121.1| peptide chain release factor 1 [Phaeobacter gallaeciensis BS107] gi|161386943|gb|EDQ11304.1| peptide chain release factor 1 [Phaeobacter gallaeciensis BS107] Length = 351 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 182/355 (51%), Positives = 251/355 (70%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E M+E + L +EY+ + P+ +I+ Y + + ++ Sbjct: 1 MIPEDRLEQILQRFQYLEAAMAEGVAGADIAALAKEYSDLRPVAEQITAYRRLLCDLEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++ +LA+ E+ + + E E+ + LLP+D D + +LEIR GTGG Sbjct: 61 EQMLA----DPDMAELAEEELPQLRAALPEAEHALQLALLPRDEADARPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W E++ + GG KE+VA + G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWGFEIIEEQTTELGGLKEVVAHVKGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPVTESGGRIHTSAATVAVLPEAEDVDLRIDPGDLRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+V SSEKSQH+NR AM+V+R RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHIPTGIIVVSSEKSQHRNREIAMQVMRTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++QG +D+II+ L QA+++ + Sbjct: 297 SERIRTYNFPQGRMSDHRINLTLYKLDQIMQGDLDEIIDALTADDQARLLAEMGQ 351 >gi|84516322|ref|ZP_01003682.1| peptide chain release factor 1 [Loktanella vestfoldensis SKA53] gi|84510018|gb|EAQ06475.1| peptide chain release factor 1 [Loktanella vestfoldensis SKA53] Length = 351 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 185/354 (52%), Positives = 248/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ +I + +RF +E +MS++ L EYA + P++ ++ Y + D Sbjct: 1 MIAADKIEQIIDRFRFLEAKMSDAAHGGDIAALGREYAELRPVVDTVTAYKDLLAQMIDT 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R LA+ E+ ++ + E+ + LLPKD D + +LEIR GTGG Sbjct: 61 QALLK----DPEMRALAEDELPELKAALAASEHAVQLALLPKDAADARPALLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDL RMY+RYA W+ E+L S + GG KE+VA ++G GVF+R+K+ESGV Sbjct: 117 DEASLFAGDLLRMYQRYAENMGWRFEILEQSQTELGGIKEVVARVAGEGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMRASGSGGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAQDVDIQINPNDLRIDTMRASGSGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRI HIPTG++V S+EKSQH+NR AM+VL+ RL+D+ER+R+ ERSA+RK Q+GSGDR Sbjct: 237 AVRILHIPTGLIVVSAEKSQHRNREIAMQVLKTRLFDLERQRIDGERSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L V+ G +D II+ L + QA ++ Sbjct: 297 SERIRTYNFPQGRLTDHRINLTLYSLGQVMAGDLDTIIDALQSEAQAALLAEMG 350 >gi|153008371|ref|YP_001369586.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188] gi|166223580|sp|A6WXQ3|RF1_OCHA4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151560259|gb|ABS13757.1| peptide chain release factor 1 [Ochrobactrum anthropi ATCC 49188] Length = 357 Score = 298 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 216/356 (60%), Positives = 279/356 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P + Y+KL EY+ + ++ KI ++E Sbjct: 1 MIALPQDRMDQLLKRFSMIESQMANNPDSETYVKLASEYSELQEVVGKIRELTDSRKEAV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE E+ LLLPKD D+K+ ILEIRAGT Sbjct: 61 DLAAMRDDASTDAEMRALALEELPGVEKRIEGLEQEVQILLLPKDAADEKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ ERS +R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKADTERSESRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLTELG 356 >gi|295688344|ref|YP_003592037.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756] gi|295430247|gb|ADG09419.1| peptide chain release factor 1 [Caulobacter segnis ATCC 21756] Length = 356 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 197/355 (55%), Positives = 263/355 (74%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF E+E RM + +KL++E+A + P+ + + E +L Sbjct: 3 LPQARLDQVLDRFREVEARMGAATDGTEIVKLSKEHAELKPVAEAVERLAKLSAERAELD 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+ D+ + E+ +++++ LE ++ +L PKD D++ S ILE+RAGTGG Sbjct: 63 VMAA----DPEMADMVRDEMAELDEKLPVLERDLALMLAPKDKDENASAILEVRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY+RYA L W+VE+ S S+ + GGYKEIVA+I+G GVF R+KFESGVH Sbjct: 119 EAALFAGDLFRMYQRYAQLHGWRVEIDSISEGEMGGYKEIVASITGDGVFGRLKFESGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTSAATVAVLPEA ++++DI D+RIDT R+SG+GGQHVN TDSA Sbjct: 179 RVQRVPATEAQGRIHTSAATVAVLPEAEDVEIDIKESDLRIDTYRSSGAGGQHVNKTDSA 238 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++VTSSEKSQHQNR RAMK L+ARLYD++R+ + + RS RK Q+GSGDRS Sbjct: 239 VRITHLPTGVVVTSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRS 298 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY L +++G +DD+INPL+ QA+ + S E Sbjct: 299 ERIRTYNFPQGRVTDHRINLTLYNLSRIMEGDALDDVINPLIAEDQAERLASLEE 353 >gi|93355984|gb|ABF10073.1| peptide chain release factor RF-1 [Cupriavidus metallidurans CH34] Length = 371 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++ ++D Y KL+ E+A +SP+ + Y Q + Sbjct: 12 MKASISTKLDQLAERLDEVNALLAREDATANMDQYRKLSREHAELSPVAEQYGQYRQAQD 71 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++ A E+ A + ++ LEN + LLLPKD +DD++ +LEIR Sbjct: 72 DLATAQALL----DDPEMKEFAADEIDAARERLQSLENSLQTLLLPKDPNDDRNLLLEIR 127 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RYA R+W+VE++S S +D GGYKE++ I+G FSR+K Sbjct: 128 AGTGGEESALFAADLLRMYTRYAERRRWQVEIMSESPSDLGGYKEVIVRIAGDAAFSRLK 187 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E+ +V+I D+R+DT RASG+GGQH Sbjct: 188 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADEVGEVEINPSDLRVDTFRASGAGGQH 247 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V ++SQH+N+ +AMKVL AR+ D++ + + + R+ Sbjct: 248 VNKTDSAVRLTHLPTGIVVECQDDRSQHRNKEKAMKVLAARIKDMQLRAAQAKEANTRRN 307 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D++I+ L HQA + + Sbjct: 308 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDMIMDGDLDELISALSAEHQADQLAAL 367 Query: 356 SE 357 E Sbjct: 368 GE 369 >gi|126665163|ref|ZP_01736146.1| peptide chain release factor 1 [Marinobacter sp. ELB17] gi|126630533|gb|EBA01148.1| peptide chain release factor 1 [Marinobacter sp. ELB17] Length = 364 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 255/362 (70%), Gaps = 5/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L RF E+ +S++ + + + +L+ EYA I P++ + Sbjct: 1 MKPSIQSRLEQLVERFEEVSALLSDAGVIANQNKFRELSREYAEIEPVVQCFQAWQHSLV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D ++D+++R++A+ E+ ++ EL+ E+ L+LPKD +D K+ LE+R Sbjct: 61 DINEARELSKDGDADADMREMAEEELHTAQQASEELDAELQGLMLPKDPNDGKNVFLEVR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY R+A R+W+VE+LS+S+ + GGYKE++A ++G GV+ +K Sbjct: 121 AGTGGDEAAIFAGDLFRMYSRFAERRRWQVEILSASEGEHGGYKEVIARVAGSGVYGTLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTSA TVAV+PEA E + V+I D+R+DT RASG+GGQH Sbjct: 181 FESGVHRVQRVPETESQGRIHTSACTVAVMPEADEAEAVEINKGDLRVDTFRASGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+G++V E+SQH+NR +AM +L +RL ++E +R + RK Sbjct: 241 VNKTDSAIRITHLPSGLVVECQEERSQHKNRAKAMSLLASRLQNIETERAHQSMAETRKS 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF Q R+TDHRINLTLYKL+ V+ G +D ++ PLL HQA+++ + Sbjct: 301 LVGSGDRSERIRTYNFPQSRVTDHRINLTLYKLDEVIAGDLDSVVKPLLQEHQAELLAAL 360 Query: 356 SE 357 ++ Sbjct: 361 AD 362 >gi|227823188|ref|YP_002827160.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234] gi|227342189|gb|ACP26407.1| peptide chain release factor 1 [Sinorhizobium fredii NGR234] Length = 352 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 233/347 (67%), Positives = 287/347 (82%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L+ RFAEIE RMS PS D Y+KL EY+ + P+++KI Y++ E D+ ++ D Sbjct: 3 ELERRFAEIEARMSAGPSADVYVKLASEYSELQPVVTKIRAYEKATAELADIEVLLSDRA 62 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+RDLA++E +E+ I LE EI LLLPKD D+KS ILEIRAGTGGSEAALF G Sbjct: 63 TDKEMRDLAEMERPEVEERIEALEEEIQILLLPKDAADEKSAILEIRAGTGGSEAALFAG 122 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DLFRMYERYAA + W+VEVLS+S+ + GGYKEI+AT+SGRGVFSR+KFESGVHRVQRVP Sbjct: 123 DLFRMYERYAAAKGWRVEVLSASEGEAGGYKEIIATVSGRGVFSRLKFESGVHRVQRVPE 182 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TEASGR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+P Sbjct: 183 TEASGRIHTSAATVAVLPEAEEIDIEIRAEDIRIDTMRSSGAGGQHVNTTDSAVRITHLP 242 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 TGI+VTSSEKSQHQNR +AM+VLR+RL+D+ER+R +ERSA+RK Q+GSGDRSERIRTYN Sbjct: 243 TGIVVTSSEKSQHQNRAKAMQVLRSRLFDMERQRADSERSADRKSQVGSGDRSERIRTYN 302 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 F QGR+TDHRINLTLYKL+ +++G ID++++ LL HQA + E Sbjct: 303 FPQGRLTDHRINLTLYKLDRMMEGEIDEVVDALLADHQASQLALLGE 349 >gi|300690281|ref|YP_003751276.1| peptide chain release factor RF-1 [Ralstonia solanacearum PSI07] gi|299077341|emb|CBJ49966.1| peptide chain release factor RF-1 [Ralstonia solanacearum PSI07] Length = 356 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 172/360 (47%), Positives = 247/360 (68%), Gaps = 11/360 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ L R EI ++ ++D Y KLT E+A + P++++ + + Q + + Sbjct: 1 MLS--KLDQLAERIVEINALLAREDATANLDQYRKLTREHAELEPVVAQYAAWKQAEDDV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D +++ A+ E+ A + + LE E+ LLLP++ +D ++ LEIRAG Sbjct: 59 ATAQELLA----DPDMKAFAEDEIRAARERMTTLEAELQRLLLPRNPNDHRNIFLEIRAG 114 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+KFE Sbjct: 115 AGGDESALFAGDLLRMYTRYAERQRWQVELVSESASDLGGYKEVIARLVGEGAYSRLKFE 174 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH+N Sbjct: 175 SGGHRVQRVPATEAQGRIHTSACTVAVMPEADPLADIQINPADLRIDTFRASGAGGQHIN 234 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVR+TH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK I Sbjct: 235 KTDSAVRLTHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLI 294 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GSGDRS+RIRTYNF QGRITDHRINLTLYK++ ++ G +D+++ L HQA+ + + E Sbjct: 295 GSGDRSDRIRTYNFPQGRITDHRINLTLYKIDAIMDGDLDELLGALAAEHQAEQLAALGE 354 >gi|332290276|ref|YP_004421128.1| peptide chain release factor 1 [Gallibacterium anatis UMN179] gi|330433172|gb|AEC18231.1| peptide chain release factor 1 [Gallibacterium anatis UMN179] Length = 360 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + ++ + ++EY+ + ++ + + Q Sbjct: 1 MKASIISKLETLDERYEELQALLGDPSVINDQEKFRAYSKEYSQLEDVVKCFARWKQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q+ ++ D ++++A+ E+ + I E E ++ LLLPKD +D+ +C LEIR Sbjct: 61 DLQEAQILL----DDPSMKEMAEEEIAHCTQGIEESEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+ EVLS+++++ GGYKEI+ ISG V+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRTEVLSANESEQGGYKEIIVKISGENVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESALPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +RL E +R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRLVQAEEERKAAEQADTRRS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLTLY+L+ ++ G IDD+I P++T +QA+ + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTLYRLDEIMNGKIDDLIQPIITEYQAEQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|163858862|ref|YP_001633160.1| peptide chain release factor 1 [Bordetella petrii DSM 12804] gi|229470349|sp|A9IER8|RF1_BORPD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|163262590|emb|CAP44893.1| peptide chain release factor 1 [Bordetella petrii] Length = 360 Score = 297 bits (761), Expect = 1e-78, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ ++E ++ + KL+ E A + P++ + + + + Sbjct: 1 MKSSMRSRLEQLSHRLIEVDALLAEPDTAADMERFRKLSRERAELEPVVQAFAQFARTED 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D +++ +A+ E+ + + +LE+E+ LLLP+D +D +S LEIR Sbjct: 61 DLATAQEMLA----DPDMKAMAEDEIKTGRERLEKLESELQVLLLPRDPNDGRSLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+VE++S S ++ GGYKE++A I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYSRYAEQRGWRVELMSESPSELGGYKEVIARIDGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA + + D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAVMPEADAMSDIVINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDKAMQVLAARLKDRELRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++ L+ HQA+ + + Sbjct: 297 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLQQIMEGDLEELTGALIAEHQAEQLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|319781345|ref|YP_004140821.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167233|gb|ADV10771.1| peptide chain release factor 1 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 359 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 222/356 (62%), Positives = 277/356 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ + RF +E +MS P+ DAY+++ EYA I +++K+ + E+ Sbjct: 1 MVNLPRDRMDQVVKRFEMLEAQMSAGPAPDAYVRMASEYAEIQDMVAKVRALRAAEHEQA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D +D+E+R LA+ E+ +E I L+ +I LLLP+D DDK+ ILEIRAGT Sbjct: 61 DLEAMLADRGTDAEMRALAEAELPGVEDRIEALQKDIQILLLPRDAADDKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA R W+ E S+SD D GGYKEI+AT+SG+GVF+ +KFES Sbjct: 121 GGDEAALFAGDLFRMYERYAAERGWRFETASASDGDAGGYKEIIATVSGKGVFAHLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGR+HTSAATVAVLPEA E+D+DI EDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRIHTSAATVAVLPEAEEVDIDIRAEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGIMV +EKSQHQNR +AM++LRARLYD+ER + ERS +RK Q+GSG Sbjct: 241 DSAVRITHLPTGIMVVQAEKSQHQNRAKAMQILRARLYDLERGKADEERSESRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+IIN L+ HQ+K++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMMGELDEIINALIADHQSKLLADIG 356 >gi|302390589|ref|YP_003826410.1| bacterial peptide chain release factor 1 (bRF-1) [Thermosediminibacter oceani DSM 16646] gi|302201217|gb|ADL08787.1| bacterial peptide chain release factor 1 (bRF-1) [Thermosediminibacter oceani DSM 16646] Length = 364 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 169/357 (47%), Positives = 251/357 (70%), Gaps = 4/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ E+ +SE + + + KL +E+A++ I+S Y + E ++ Sbjct: 1 MLDKLDAIEERYEELTREISEPAVIARQEEWRKLAKEHASLEEIVSCYREYKKVVSEIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + ++D E+ + + E+ ++K +EL+ + LLLPKD +D+K I+EIRAG G Sbjct: 61 SRELLKETSNDREMEEFIKEELENLQKREKELQERLKILLLPKDPNDEKDVIMEIRAGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + WKVE++SSS + GG+KE++ + GRG +SR+K+ESG Sbjct: 121 GEEAALFAGDLFRMYTRYAERQGWKVELMSSSPTELGGFKEVIFEVMGRGAYSRLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TEA GR+HTS ATVAVLPEA E+DV+I ++RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRIPVTEAGGRIHTSTATVAVLPEAEEVDVEINPNELRIDVFRSSGHGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V E+SQ +NR +AMK+LRA+L +++++ + + +R+ Q+G+G Sbjct: 241 SAVRITHLPTGIVVTCQDERSQLKNRDKAMKILRAKLLEMKQREQNEKIAQSRRSQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRI T ++LE +L G +D++I L+ QA+ + A + Sbjct: 301 DRSERIRTYNFPQGRVTDHRIGFTTHQLENILDGELDELIERLIAEDQARRLAEADD 357 >gi|197104299|ref|YP_002129676.1| peptide chain release factor RF-1 [Phenylobacterium zucineum HLK1] gi|196477719|gb|ACG77247.1| peptide chain release factor RF-1 [Phenylobacterium zucineum HLK1] Length = 377 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 198/355 (55%), Positives = 268/355 (75%), Gaps = 3/355 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF EIE RM + ++L++E+A + P+ + ++ + E+ +L Sbjct: 22 LPQARLDQVLDRFREIEARMGAASDGAEIVRLSKEHAELKPVADAVQALERARAEQPELE 81 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D+E+ LA+ E+ A+++ + ELE E+ LL PKD D++ S ILE+RAGTGG Sbjct: 82 EMAA--SGDAEMAALARDELEALKERLPELEREVALLLAPKDKDENASAILEVRAGTGGD 139 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY+RYA R W+VE+ S S+ D GGYKEI+A+I+G GVF R+KFESGVH Sbjct: 140 EAALFAGDLFRMYQRYAQTRGWRVEIDSISEGDAGGYKEIIASITGEGVFGRLKFESGVH 199 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTSAATVAVLPE ++++++ +DIRIDT R+SG+GGQHVN TDSA Sbjct: 200 RVQRVPATEAQGRIHTSAATVAVLPEVEDVEIEVRDQDIRIDTYRSSGAGGQHVNKTDSA 259 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTGI+VTSSEKSQHQNR RAMKVL+ARLY+ +R+ + + R+ +RK Q+GSGDRS Sbjct: 260 VRITHLPTGIVVTSSEKSQHQNRARAMKVLKARLYEQQREALDSARAESRKSQVGSGDRS 319 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY L V++G +DD+I PL+ QA + + + Sbjct: 320 ERIRTYNFPQGRVTDHRINLTLYNLAKVMEGEALDDVIEPLIAEDQAARLAALED 374 >gi|49475009|ref|YP_033050.1| peptide chain release factor 1 [Bartonella henselae str. Houston-1] gi|61214620|sp|Q6G5T7|RF1_BARHE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|49237814|emb|CAF27009.1| Peptide chain release factor 1 [Bartonella henselae str. Houston-1] Length = 359 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 225/355 (63%), Positives = 284/355 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+++P+ + Y+KL EYA + PI+S I + E Sbjct: 1 MVSLPQDRMRQLEKRFEIIESQMAKNPNAEIYVKLASEYAELQPIVSSIRALNALYGEIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL T+I D +D E+R LAQ E+ + +++ +LE ++ LLLPKD D+KS I+EIRAGT Sbjct: 61 DLETIISDKLTDVEMRTLAQEELPLLCQKMEQLEQKLQILLLPKDVADEKSAIVEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYAA R WKVEV+S ++ + GGYKEI+ATISGRGVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERYAASRNWKVEVVSLNEGEVGGYKEIIATISGRGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ NERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAENERSASRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ VL+G +D++I+ L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVLEGDLDELIHALISDHQTALLMEM 355 >gi|220927713|ref|YP_002504622.1| peptide chain release factor 1 [Clostridium cellulolyticum H10] gi|254790874|sp|B8I562|RF1_CLOCE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219998041|gb|ACL74642.1| peptide chain release factor 1 [Clostridium cellulolyticum H10] Length = 359 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 257/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++R+ EI ++S+ ++ Y K +E + + I+ K Y + +E ++ Sbjct: 3 DKLQAAEDRYEEISHKLSDPDVINNQDEYKKYMKECSDLEEIVQKYREYTKVTKEIEEAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D + R++ Q E ++++ ++ ++ L++PKD +DDK+ I+EIR G GG Sbjct: 63 ELL-EQTLDKDFREMVQQEFQEAQEKLEVIKRQLKILIVPKDPNDDKNVIVEIRGGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFR +YA ++WK E+L S+ + GG+KE+V TI G+G +SR+KFESGVH Sbjct: 122 EAALFAGVLFRAMAKYAEKKRWKYEILDSNPTELGGFKEVVFTIEGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+SGR+HTS TVAVLPE E+DVDI D+RIDT RASG+GGQH+N TDSA Sbjct: 182 RVQRVPSTESSGRIHTSTITVAVLPEVEEVDVDINPSDLRIDTYRASGAGGQHINKTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AMK+LR++LY++ +++ NE + +RK Q+G+GDR Sbjct: 242 IRITHMPTGIVVSCQDERSQHKNKDKAMKILRSKLYEIAQEQQINEVAQDRKNQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRINLTLYKLE VL G +D++I+ L+T Q++ +GS S+ Sbjct: 302 SERIRTYNYPQGRVTDHRINLTLYKLEQVLDGDLDELIDALITTDQSEKLGSGSD 356 >gi|261392089|emb|CAX49586.1| peptide chain release factor I (RF-1) [Neisseria meningitidis 8013] Length = 358 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + +S +D Y KLT E+A ++P++ Y + Sbjct: 1 MKPSILEKLQQLGDRLEEVTHLLGQSEATADMDNYRKLTREHAELTPVVEVFQNYRLAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DLADAEEML----SDPEMKDFAAEEIEAAKAKIGELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G + +I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLAEITDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|90022891|ref|YP_528718.1| peptide chain release factor 1 [Saccharophagus degradans 2-40] gi|119361599|sp|Q21FM3|RF1_SACD2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|89952491|gb|ABD82506.1| bacterial peptide chain release factor 1 (bRF-1) [Saccharophagus degradans 2-40] Length = 360 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 183/362 (50%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E+ M + + D + L EYA + P+I + Y+ Sbjct: 1 MKASILEKLEHLAERFTEVGALMGDPDVISNQDKFRDLGREYAELEPVIKCYNEYNTVLG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I D SD ++R + Q E+ E + LE E+ LLLPKD +D K+ LEIR Sbjct: 61 NIAEAKVLISD--SDPDMRAMGQDELKENEAALEPLELELQKLLLPKDPNDGKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE++S + + GGYKEI+ + G+GV+S +K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAESKGWKVEIISENQGEHGGYKEIITRVVGQGVYSELK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E+ +V+I D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADEMAEVNINKADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIPTG++V E+SQH+NR +AM +L +RL + ++ A E+++ RK Sbjct: 239 VNKTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMSLLASRLSMAQEEKAAAEQASARKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+QG + D+I PL+ +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVMQGALGDVIQPLVNEYQADQLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|119897272|ref|YP_932485.1| peptide chain release factor 1 [Azoarcus sp. BH72] gi|166223529|sp|A1K443|RF1_AZOSB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119669685|emb|CAL93598.1| peptide chain release factor [Azoarcus sp. BH72] Length = 361 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE++ +S ++A+ L+ E A + P+++ Y Q +Q Sbjct: 1 MKQSIRDKLEHLAGRLAELDRELSSEDATRDMNAFRDLSRERAELEPVVALYGAYRQAEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++L + E+ A E I L+ ++ LLP+D +D+++ LEIR Sbjct: 61 DCATARELL----DDPEMQELGRSELEAGEARIAALDGDLQRALLPRDPNDERNLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA ++W+VE++SS+ +D GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERQRWRVEIVSSNPSDLGGYKEVIARIVGAGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQR+P TE GR+HTSA TVAV+PEA E V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRIPVTETQGRIHTSACTVAVMPEADELAAVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM VL ARL D + + + +A R+ Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKAQAMAVLAARLNDAQLRARQSAEAATRRS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D+++ L+ HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDAVMQGELDELLAALVLEHQAEQLAAL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|301156075|emb|CBW15546.1| peptide chain release factor RF-1 [Haemophilus parainfluenzae T3T1] Length = 360 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EY+ + ++ + ++Q Sbjct: 1 MKDSIIAKLESLKERYEELEALLGDASVISDQDKFRAYSKEYSQLEDVVKCFNRWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++++A++E+ + EI ++E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NIAEAELML----DDPEMKEMAEMEIEESKVEIEDVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLTLY+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTLYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|219856616|ref|YP_002473738.1| hypothetical protein CKR_3273 [Clostridium kluyveri NBRC 12016] gi|219570340|dbj|BAH08324.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 367 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 248/357 (69%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++N++ E+ +++S+ + + KL +E+A + I+ K Y + Q+ + Sbjct: 10 IMLERLNFIENKYEELSIKISDPTIIADQKKWQKLCKEHAELEEIVMKYREYKEALQDLE 69 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ + +D ++R++ Q E+ + I + E+E+ LLLPKD +DDK+ +EIR G Sbjct: 70 DNKEMLREE-TDKDMREMEQEEIKRLGDIIEKREDELKILLLPKDPNDDKNVFVEIRGGA 128 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L RMY RYA ++ WKVE +S S D GG+KEIV + G+ +SR+K+ES Sbjct: 129 GGEEAALFAANLTRMYTRYAEIKGWKVETISLSATDIGGFKEIVFMVKGKDAYSRLKYES 188 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+SGR+HTS ATVAVLPE ++D+ + DIRID RASG GGQ VNTT Sbjct: 189 GTHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIVVNQNDIRIDVFRASGHGGQCVNTT 248 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQ +N+ +AMKVL++RLY+ ++ + +RK Q+G+ Sbjct: 249 DSAVRITHLPTGLVVSCQDEKSQLKNKEKAMKVLKSRLYEKAQEERNASIAEDRKNQVGT 308 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRI +TLYKL+ L G ID+II+ L+T QA+ + S Sbjct: 309 GDRSERIRTYNYPQGRVTDHRIGMTLYKLDSFLNGDIDEIIDALITEDQAQKMKSIG 365 >gi|221135300|ref|ZP_03561603.1| peptide chain release factor 1 [Glaciecola sp. HTCC2999] Length = 361 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E++ + + + + + L++EYA + ++ Y ++ Sbjct: 1 MKPSVVQKLETLVERFEEVQALLGDPDVIGDQNRFRSLSKEYAQLEDVVKSFRDYQGAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + D+E+R++AQ E+ A + I LE + LLLP+D DD +C LEIR Sbjct: 61 DLASANEMMQE--DDAEMREMAQEEIKAAKASIETLEQALQILLLPRDPQDDSNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDL+RMY RYA + W+V+++S+++ + GGYKE++A I G G + MK Sbjct: 119 AGAGGDEAAIFAGDLYRMYSRYAETKGWRVDLVSANEGEHGGYKEVIANIIGDGAYGVMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVL A +DI D+R+DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVAVLAEVAESEAIDINPADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIP+G++V E+SQH+NR +AM VL++RL ++E+++ E ++ RK Sbjct: 239 VNKTDSAIRITHIPSGVVVECQDERSQHKNRAKAMSVLQSRLNNIEKEKRDAEEASTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V+ G +D ++ P+ HQA M+ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDDVVAGDVDALLEPIRQEHQADMLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|86138685|ref|ZP_01057258.1| peptide chain release factor 1 [Roseobacter sp. MED193] gi|85824745|gb|EAQ44947.1| peptide chain release factor 1 [Roseobacter sp. MED193] Length = 361 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 195/355 (54%), Positives = 254/355 (71%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E M+E S L EY+ I P+ +I+ Y Q + +D Sbjct: 11 MIPEERLEQILQRFQYLEAAMAEGASGAEIANLAREYSEIKPVAEQITAYRQLLTDLEDA 70 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD ++++LA E+ ++ + E + LLPKD D + +LEIR GTGG Sbjct: 71 EAML----SDPDMKELAAEEIPELKAALPGAEEALQLALLPKDAADARPAMLEIRPGTGG 126 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R WK EV+ + GG KE+VA I G VF+RMK+ESGV Sbjct: 127 DEAALFAGDLLRMYQRYAEARGWKFEVIEEQATELGGIKEVVAHIKGENVFARMKYESGV 186 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+DV I DIRIDTMRASG+GGQHVNTTDS Sbjct: 187 HRVQRVPVTESGGRIHTSAATVAVLPEAQEVDVQIDPSDIRIDTMRASGAGGQHVNTTDS 246 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTG+MV S+EKSQH+NR AM+VLRARLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 247 AVRITHIPTGVMVVSAEKSQHRNREIAMQVLRARLYDLERQRVDSERSADRASQVGSGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++QG +D+II+ L +QA+++ + Sbjct: 307 SERIRTYNFPQGRMSDHRINLTLYKLDQIMQGDLDEIIDALTADNQARLLAEMGQ 361 >gi|322421625|ref|YP_004200848.1| peptide chain release factor 1 [Geobacter sp. M18] gi|320128012|gb|ADW15572.1| peptide chain release factor 1 [Geobacter sp. M18] Length = 359 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 178/359 (49%), Positives = 259/359 (72%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 +I DL+ RF E+E +S+ + + KL++E++ ++ +I+ Y + + Sbjct: 1 MSMFDRIADLETRFEELESLLSDPEVLANQGEFRKLSKEHSGLAELIAAYREYKKVLADI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D ++ + D E+R++AQ E+ ++E+ +LE+EI LLLPKD +DDK+ +LEIRAG Sbjct: 61 GDNRELLKEP--DQEMREMAQAELESLEERREQLESEIKVLLLPKDPNDDKNVVLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDLFRMY R+A + +W+VEV+S+S+++ GG+KE++A + G GVF+++K+E Sbjct: 119 TGGDESALFAGDLFRMYSRFAEVNRWRVEVISASESEKGGFKEVIALVEGAGVFAKLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TEA GR+HTSA TVAV+PEA ++D+DI D++ID R+SG+GGQHVNT Sbjct: 179 SGTHRVQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTG +V E+SQ +NR +AMKVL++R+ D + +A+RK Q+G Sbjct: 239 TDSAVRITHIPTGTVVACQEERSQIKNRAKAMKVLKSRILDNILMEQNAKLAADRKSQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I + L +Q + + + SE Sbjct: 299 SGDRSERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIGEIADSLRAHYQMEALQAQSE 357 >gi|90420193|ref|ZP_01228101.1| peptide chain release factor 1 [Aurantimonas manganoxydans SI85-9A1] gi|90335527|gb|EAS49277.1| peptide chain release factor 1 [Aurantimonas manganoxydans SI85-9A1] Length = 359 Score = 297 bits (759), Expect = 2e-78, Method: Composition-based stats. Identities = 210/356 (58%), Positives = 279/356 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L + ++ NRFA +E MS+ P + Y KL EY+ + +++ I Y + +QE Sbjct: 1 MATLPKSSLDEILNRFALLEHEMSKGPEHEVYTKLAAEYSGLEEVVAAIRTYQKAEQELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + + ++R+LA+IE+ +++++ L EI LLLPKD D+K ILEIRAGT Sbjct: 61 EARAILDEPAAGRDMRELAEIEIDELKEQLETLTAEIRILLLPKDAADEKGAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEA LF GDLFRMY+RYA + +WKVE++S+S+ + GGY+E++A I G GVFSR+KFES Sbjct: 121 GGSEAGLFAGDLFRMYQRYAEMNRWKVEIISASEGEVGGYREVIAAIRGVGVFSRLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPEA +IDV++ EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETESGGRIHTSAATVAVLPEAEDIDVEVKTEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+VTSSEKSQHQNR RAM+VL+ARL+D+ER+R +ERSA RK Q+GSG Sbjct: 241 DSAVRITHLPTGIVVTSSEKSQHQNRARAMQVLKARLFDMERQRADDERSAARKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L+ HQA ++ + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGEMDELVDALIADHQAHLLAAVG 356 >gi|307719604|ref|YP_003875136.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192] gi|306533329|gb|ADN02863.1| peptide chain release factor 1 [Spirochaeta thermophila DSM 6192] Length = 357 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 177/357 (49%), Positives = 254/357 (71%), Gaps = 5/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + ++I +L RF E+E +++ + Y +L +E+A +S ++ Y + + Sbjct: 1 MIPERRIEELITRFKELEEALADPSIFNDQKRYRELAQEHAHLSQVVRTAEEYRRLEARL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ TV+ + D E++++A+ E+ A+E +I E + LL+P D D K+ ILEIRAG Sbjct: 61 EEAKTVL-EEEDDHELKEMAREEIKALEDQILHTEQRLKLLLVPPDPLDGKNIILEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DL+RMY RYA + WK+E++ +S+ + GG++E+V ISG+ V+ ++FE Sbjct: 120 TGGEEAALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPE E +V+I EDIR+D R+SG GGQ VNT Sbjct: 180 SGGHRVQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V EKSQH+N+ +A+K+LRARLY++E++R +ER+A R+ QIG Sbjct: 240 TDSAVRITHLPTGLVVTCQDEKSQHKNKAKALKILRARLYEMEKQRQESERAAMRRSQIG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYNF Q R+TDHRINLTLYKLE V+ G +D+II+ L A Q + + + Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRINLTLYKLEAVMDGDLDEIIDALRLAVQEEALSTM 356 >gi|313896150|ref|ZP_07829704.1| peptide chain release factor 1 [Selenomonas sp. oral taxon 137 str. F0430] gi|312975575|gb|EFR41036.1| peptide chain release factor 1 [Selenomonas sp. oral taxon 137 str. F0430] Length = 354 Score = 297 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 251/356 (70%), Gaps = 8/356 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ + +++ E+E +S+ + + + T E+AA++PI++ Y + ++ Sbjct: 1 MLS--KLTAVADKYRELEALLSDPAVMADMARWQRYTREHAALTPIVTAYEAYRKAEETV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D+E+++L E+ A E E L E+ LLLP+D +DDK+ I+EIR G Sbjct: 59 AEDKEMLAEA--DAEMKELLLEEIAAAEAERERLAEELPILLLPRDPNDDKNVIVEIRGG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF LFRMY RYA + W+ E+LSS++ + GG+KEI ++G G +S++K+E Sbjct: 117 VGGEEAALFAASLFRMYARYAERQGWRTEILSSNETEIGGFKEISFLVTGAGAYSKLKYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPEA +++V I D+RIDT ASG+GGQ+VN Sbjct: 177 SGTHRVQRIPVTESGGRIHTSAVTVAVLPEAEDVEVTIDPNDLRIDTYCASGAGGQYVNR 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T++A+RITH+PTGI+V EKSQ +N+ +AMKVLRAR+YD ++ A+ +A+R+ Q+G Sbjct: 237 TETAIRITHLPTGIVVQCQDEKSQLKNKEKAMKVLRARIYDRAQQEQADAVAADRRSQVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SGDRSERIRTYNF QGR+TDHRI LTLYK++ VL G +++++ L+TA QA+ + Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRIGLTLYKIDAVLDGELEELLAALITADQAERLKQ 352 >gi|313893571|ref|ZP_07827140.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str. F0412] gi|313441842|gb|EFR60265.1| peptide chain release factor 1 [Veillonella sp. oral taxon 158 str. F0412] Length = 360 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 172/357 (48%), Positives = 251/357 (70%), Gaps = 4/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++++F ++E R+S+ + D + KLT +++ +S + Y + Sbjct: 1 MLVDKLQVIEDKFMDLEQRISDPEIIARQDEWRKLTRQHSQLSETVETFRTYKKVLAGLD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + VI D + D E R++AQ E+ ++ + ELE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 EAMEVIEDKSLDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY +YA + W+ E++ +++ + GG+KE+V ++ G V+S+MKFES Sbjct: 121 GGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVEGENVYSKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS TVAVLPE ++D+++ +D++IDT RASG+GGQH+N T Sbjct: 181 GVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+PTGI+V ++SQ +N+ +AM+VLRA+L D + +A+RK Q+G+ Sbjct: 241 ESAVRITHLPTGIVVACQDQRSQLKNKDKAMRVLRAKLQDQAEQEAQASMAADRKSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ VL G +D+II L A QA + A+ Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLYKLDAVLNGDLDEIIQALNAADQAAKMQEAN 357 >gi|254461785|ref|ZP_05075201.1| peptide chain release factor 1 [Rhodobacterales bacterium HTCC2083] gi|206678374|gb|EDZ42861.1| peptide chain release factor 1 [Rhodobacteraceae bacterium HTCC2083] Length = 351 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 184/354 (51%), Positives = 247/354 (69%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +M+ L EY+ + P++ +++ Y Q + +D Sbjct: 1 MVPMDRLMQITQRFEFLEAKMAGGADPGEIADLAREYSDMKPVVEQVAAYRQLLSDIEDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+++LA+ E+ A++ + + E + LLPKD D + ++EIR GTGG Sbjct: 61 EAML----DDPEMKELAEEELPALKAAMPKAEAALQLALLPKDEADARPAMIEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RY+ R WK E++ + GG KE+ I G VF+R+K+ESGV Sbjct: 117 DEAALFAADLLRMYQRYSEARGWKFEIIEEQLTELGGIKEVTGHIKGENVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPTTESGGRIHTSAATVAVLPEAQEVDLVIAANDIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIPTGI+V S+EKSQH+NR AM+VLR RLYD ER+R+ ERSA+RK Q+GSGDR Sbjct: 237 AVRITHIPTGIIVVSAEKSQHRNREIAMQVLRTRLYDAERQRIDEERSADRKSQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR++DHRINLTLYKL+ V++G +D+II+ L QA + + Sbjct: 297 SERIRTYNFPQGRMSDHRINLTLYKLDQVMEGDLDEIIDALTADDQATKLAEMN 350 >gi|85705322|ref|ZP_01036421.1| peptide chain release factor 1 [Roseovarius sp. 217] gi|85670195|gb|EAQ25057.1| peptide chain release factor 1 [Roseovarius sp. 217] Length = 426 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 189/354 (53%), Positives = 250/354 (70%), Gaps = 6/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF IE +M + +L EY+ + P++ +I Y Q + + Sbjct: 79 MVPLDRLQQIAERFEFIEAQMMQGGG--DIARLGREYSELRPLVEEIRAYRQILADIEGA 136 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D E+RDLA+ E+ +E + +E + LLP+D + + ILEIR GTGG Sbjct: 137 RAMLG----DPEMRDLARDELEVLEARLPGMEAALQLALLPRDEANARPAILEIRPGTGG 192 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA R W +V+ ++ GG +E+V I G GVF+R+KFESGV Sbjct: 193 EEAALFAADLMRMYQRYAEARGWVFDVIEEQQSELGGIRELVVHIKGEGVFARLKFESGV 252 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++DV I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 253 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDVQINPNDLRIDTMRSSGAGGQHVNTTDS 312 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIP+GI+VTSSEKSQH+NR AM+VL++RL+D+ER R+ +ERSANR Q+GSGDR Sbjct: 313 AVRITHIPSGIVVTSSEKSQHRNREIAMQVLKSRLFDMERSRVDSERSANRAAQVGSGDR 372 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKLE V+ G +D++I+ L QA ++ S Sbjct: 373 SERIRTYNFPQGRMTDHRINLTLYKLEQVMGGDLDEVIDALTADAQATLLAEMS 426 >gi|206558779|ref|YP_002229539.1| peptide chain release factor 1 [Burkholderia cenocepacia J2315] gi|238693068|sp|B4E6U6|RF1_BURCJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|198034816|emb|CAR50684.1| peptide chain release factor 1 [Burkholderia cenocepacia J2315] Length = 360 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 183/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D +RD A+ E+ + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DEAAAQELLA----DPSMRDFAEDEIRSAREGMARLETELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L+T HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVTEHQAELLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|121534882|ref|ZP_01666701.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1] gi|121306481|gb|EAX47404.1| peptide chain release factor 1 [Thermosinus carboxydivorans Nor1] Length = 356 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 171/357 (47%), Positives = 248/357 (69%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++++ E+E +S+ + + K + +A ++ I++K Y + Q D Sbjct: 1 MLDKLQAIEDKYLELENLISDPDIIANQSEWQKHAKAHAKLTEIVTKFREYKKVLQGMDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D + R++ + E+ ++ + LE E+ L+LPKD +D+K+ I+EIRAG G Sbjct: 61 AREMLKEKLDD-DFREMVEAELAELKAKCVRLEEELRILMLPKDPNDEKNVIIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + W+VE+L ++ +D GG+KE+V +I G G +SR K+ESG Sbjct: 120 GDEAALFAGDLFRMYTRYAEAQGWRVELLDANSSDLGGFKEVVFSIQGDGAYSRFKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TEASGR+HTS TVAVLPEA ++D I D+RIDT ASG+GGQHVN T Sbjct: 180 VHRVQRVPETEASGRIHTSTVTVAVLPEADDVDDVVINPSDLRIDTYCASGAGGQHVNKT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+PTGI+V EKSQ +NR +AM+VLRA+L + ++ + + RK Q+G+ Sbjct: 240 ESAVRITHLPTGIVVQCQDEKSQIKNREKAMRVLRAKLLEAAQEEQRAQLAQTRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRI LTL+KL+++L G +D++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNFPQGRVTDHRIGLTLHKLDFILNGDLDELINALVTADQAERLKQVG 356 >gi|294787740|ref|ZP_06752984.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453] gi|294484033|gb|EFG31716.1| peptide chain release factor 1 [Simonsiella muelleri ATCC 29453] Length = 358 Score = 296 bits (758), Expect = 3e-78, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ + ++D Y KL +E+A ++PI+ Y Q + Sbjct: 1 MKPSLLDKLQNLAHRLEEVTALLGSPEATANMDNYRKLNQEHAELTPIVETYQQYRQAES 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ + +I +L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAQEML----SDPEMKDFAAEEIEHAKTQIEQLDFELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY R+A +W+ E++S+S++D GGYKE++ + G G +S++K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRFAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E ++ + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPTTESQGRIHTSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAIRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITSALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|315186593|gb|EFU20352.1| bacterial peptide chain release factor 1 (bRF-1) [Spirochaeta thermophila DSM 6578] Length = 357 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 178/357 (49%), Positives = 254/357 (71%), Gaps = 5/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + ++I +L RF E+E +++ + Y +L +E+A +S ++ Y + + Sbjct: 1 MIPERRIEELTTRFKELETALADPSVFNDQKRYRELAQEHAHLSQVVRTAEHYRRLEARL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ TV+ + D E++++A+ E+ A+E EI E + LL+P D D K+ ILEIRAG Sbjct: 61 EEAKTVL-EEEDDHELKEMAREEIKALEGEIARTEQRLKLLLVPPDPLDGKNIILEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DL+RMY RYA + WK+E++ +S+ + GG++E+V ISG+ V+ ++FE Sbjct: 120 TGGEEAALFAADLYRMYARYAERKGWKMEIMEASETELGGFRELVCAISGKEVYGHLRFE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPE E +V+I EDIR+D R+SG GGQ VNT Sbjct: 180 SGGHRVQRIPVTESGGRIHTSAVTVAVLPEPEETEVEIRPEDIRVDVFRSSGPGGQSVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V EKSQH+N+ +A+K+LRARLY++E++R +ER+A R+ QIG Sbjct: 240 TDSAVRITHLPTGLVVSCQDEKSQHKNKAKALKILRARLYEMEKQRQESERAAMRRSQIG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYNF Q R+TDHRINLTLYKLE V+ G +D+II+ L A Q + + + Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRINLTLYKLEAVMDGDLDEIIDALRLAVQEEALSTM 356 >gi|319408172|emb|CBI81825.1| peptide chain release factor 1 [Bartonella schoenbuchensis R1] Length = 359 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 224/357 (62%), Positives = 282/357 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L +I ++ RF IE +M+ SP+ + YIKL EYA + I++ I + +E + Sbjct: 1 MVSLPQNRIKQIEKRFEIIESQMAGSPNAETYIKLASEYAELQLIVTPIRTLNALYKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I D +D E+R+LAQ E+ + ++I +LE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELKNIISDKQTDVEMRNLAQEELSLLCQKIEQLERELQILLLPKDIADEKSAIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA WKVE++S SD D GGYKEIVAT+SG+GVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERYANTHNWKVEIISLSDGDVGGYKEIVATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TEA GR+HTSAATVAVLPEA EID+ I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETEAGGRIHTSAATVAVLPEAEEIDIAIHPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ NERS +RK QIGSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRTRALQILRARLFDIERQKAENERSESRKTQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++I+ L++ HQ ++ + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELIHALISNHQTGLLTEMDD 357 >gi|325578168|ref|ZP_08148303.1| peptide chain release factor RF1 [Haemophilus parainfluenzae ATCC 33392] gi|325159904|gb|EGC72033.1| peptide chain release factor RF1 [Haemophilus parainfluenzae ATCC 33392] Length = 360 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EY+ + ++ + ++Q Sbjct: 1 MKDSIIAKLESLKERYEELEALLGDASVISDQDKFRAYSKEYSQLEDVVKCFNRWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++++A++E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NIAEAELML----DDPEMKEMAEMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLTLY+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTLYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|293392123|ref|ZP_06636457.1| peptide chain release factor 1 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952657|gb|EFE02776.1| peptide chain release factor 1 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 360 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 257/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EYA + ++ + ++Q Sbjct: 1 MKPSIINKLDSLKERYEELEALLGDAAVISDQDKFRAYSKEYAQLEDVVKSFNRWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + E+ ++E + LLLPKD +D+ +C LEIR Sbjct: 61 NLEEAQLLL----DDPEMKEMAQMEIEESKAELEQVEQYLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W VEVLS ++++ GG+KEI+A +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAETKRWHVEVLSENESEQGGFKEIIALVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG++V E+SQH+N+ +A+ VL +RL E++++A E++ R+ Sbjct: 237 INKTDSAVRITHIPTGMVVECQDERSQHKNKAKALSVLASRLVQQEQEKLAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G IDD+I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDDLIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|83747499|ref|ZP_00944537.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Ralstonia solanacearum UW551] gi|83725813|gb|EAP72953.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Ralstonia solanacearum UW551] Length = 374 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI ++ ++D Y KLT E+A + P++++ +++ Q + Sbjct: 15 MKPSMLSKLDQLAERTIEINALLAREDATANLDQYRKLTREHAELEPVVTQYAVWKQAEN 74 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D +++ A+ E+ + LE E+ LLLPKD +D ++ LEIR Sbjct: 75 DVATAQELLA----DPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIR 130 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+K Sbjct: 131 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLK 190 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH Sbjct: 191 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQH 250 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK Sbjct: 251 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKS 310 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA+ + + Sbjct: 311 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDALMDGDLDELLGTLAAEHQAEQLAAL 370 Query: 356 SE 357 E Sbjct: 371 GE 372 >gi|153956299|ref|YP_001397064.1| peptide chain release factor 1 [Clostridium kluyveri DSM 555] gi|189039965|sp|A5N3J7|RF1_CLOK5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146349157|gb|EDK35693.1| PrfA [Clostridium kluyveri DSM 555] Length = 357 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 170/356 (47%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ +++S+ + + KL +E+A + I+ K Y + Q+ +D Sbjct: 1 MLERLNFIENKYEELSIKISDPTIIADQKKWQKLCKEHAELEEIVMKYREYKEALQDLED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D ++R++ Q E+ + I + E+E+ LLLPKD +DDK+ +EIR G G Sbjct: 61 NKEMLREE-TDKDMREMEQEEIKRLGDIIEKREDELKILLLPKDPNDDKNVFVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA ++ WKVE +S S D GG+KEIV + G+ +SR+K+ESG Sbjct: 120 GEEAALFAANLTRMYTRYAEIKGWKVETISLSATDIGGFKEIVFMVKGKDAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+SGR+HTS ATVAVLPE ++D+ + DIRID RASG GGQ VNTTD Sbjct: 180 THRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIVVNQNDIRIDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL++RLY+ ++ + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQLKNKEKAMKVLKSRLYEKAQEERNASIAEDRKNQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI +TLYKL+ L G ID+II+ L+T QA+ + S Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGMTLYKLDSFLNGDIDEIIDALITEDQAQKMKSIG 355 >gi|126739408|ref|ZP_01755101.1| peptide chain release factor 1 [Roseobacter sp. SK209-2-6] gi|126719508|gb|EBA16217.1| peptide chain release factor 1 [Roseobacter sp. SK209-2-6] Length = 351 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 187/355 (52%), Positives = 255/355 (71%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E M+E S L EY+ I P+ +I Y Q + ++ Sbjct: 1 MIPEERLEQILQRFQYLEAAMAEGASGAEIADLAREYSEIKPVAEQICAYRQLLADLEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++++LA+ E+ ++ + + E+ + LLPKD D + +LEIR GTGG Sbjct: 61 EVMLA----DPDMKELAEEEIPTLKAALPDAEHALQLALLPKDAADTRPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDL RMY+RYA R WK EV+ + GG KE+V I G VF+RMK+ESGV Sbjct: 117 DEASLFAGDLLRMYQRYAEARGWKFEVIEEQATELGGIKEVVVHIKGENVFARMKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPVTESGGRIHTSAATVAVLPEAEDVDIHIDANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR++DHRINLTLYKL+ ++QG +D+II+ L HQA+++ S+ Sbjct: 297 SERIRTYNFPQGRMSDHRINLTLYKLDQIMQGDLDEIIDALTADHQARLLSEMSQ 351 >gi|163867491|ref|YP_001608690.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476] gi|189039959|sp|A9IMM3|RF1_BART1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|161017137|emb|CAK00695.1| peptide chain release factor 1 [Bartonella tribocorum CIP 105476] Length = 358 Score = 296 bits (757), Expect = 4e-78, Method: Composition-based stats. Identities = 223/355 (62%), Positives = 283/355 (79%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L +I L+ RF IE +M+ +P+ + Y+KL EYA + P+I+ I + E Sbjct: 1 MVSLPQDRIKQLEKRFEIIESQMTTNPNAETYVKLASEYAELQPVIASIRALNALYGEIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D E+R LAQ E+ ++ K++ +LE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELETIINDKQTDIEMRHLAQEELPSLHKKVEQLEKELQILLLPKDVADEKSAIVEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA WKVEV+S S+ + GGYKEI+ATISG+GVFS++K+ES Sbjct: 121 GGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKYES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID+DI EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER+++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKVESERSASRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ +L+G +D+II+ L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRILEGDLDEIIHALISDHQTALLMEM 355 >gi|107024140|ref|YP_622467.1| peptide chain release factor 1 [Burkholderia cenocepacia AU 1054] gi|116688534|ref|YP_834157.1| peptide chain release factor 1 [Burkholderia cenocepacia HI2424] gi|170731835|ref|YP_001763782.1| peptide chain release factor 1 [Burkholderia cenocepacia MC0-3] gi|254246465|ref|ZP_04939786.1| Peptide chain release factor 1 [Burkholderia cenocepacia PC184] gi|119361514|sp|Q1BSB1|RF1_BURCA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223531|sp|A0K437|RF1_BURCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238688554|sp|B1JUS4|RF1_BURCC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|105894329|gb|ABF77494.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia cenocepacia AU 1054] gi|116646623|gb|ABK07264.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia cenocepacia HI2424] gi|124871241|gb|EAY62957.1| Peptide chain release factor 1 [Burkholderia cenocepacia PC184] gi|169815077|gb|ACA89660.1| peptide chain release factor 1 [Burkholderia cenocepacia MC0-3] Length = 360 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 183/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D +RD A+ E+ + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DETAAQELLA----DPSMRDFAEDEIRSAREGMARLETELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L+T HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVTEHQAELLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|126728795|ref|ZP_01744610.1| peptide chain release factor 1 [Sagittula stellata E-37] gi|126710725|gb|EBA09776.1| peptide chain release factor 1 [Sagittula stellata E-37] Length = 349 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 183/353 (51%), Positives = 249/353 (70%), Gaps = 6/353 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ +K R +E +M+ + L E+A +SP++ +I+ +++ + ++ Sbjct: 1 MIPSDRLHQIKARLEYVEAQMATGGG--DIVALGREFAELSPVVRQIAEWERLTSDIEEA 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R LA+ E+ + + E + LLPKD D + +LEIR GTGG Sbjct: 59 EAMLA----DPEMRALAEEELPDLRAALPAAEKAVQLALLPKDAADARPAVLEIRPGTGG 114 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA W+ +V+ ++ GG KE+V + G GVF+R+KFESGV Sbjct: 115 DEAALFAGDLARMYQRYAEAHGWRWDVIEEQMSELGGVKELVVRVVGEGVFARLKFESGV 174 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I DIRIDTMR+SG+GGQHVNTTDS Sbjct: 175 HRVQRVPETESGGRIHTSAATVAVLPEAEEVDIAIAAADIRIDTMRSSGAGGQHVNTTDS 234 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLR RL+D+ER + RSA+RK Q+GSGDR Sbjct: 235 AVRITHLPTGIVVTSSEKSQHRNREIAMQVLRTRLFDLERSKADAARSADRKAQVGSGDR 294 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF QGR+TDHRI LTLYKL+ ++ G +D+II+ L++ HQA ++ Sbjct: 295 SERIRTYNFPQGRMTDHRIGLTLYKLDAIMGGDLDEIIDALISEHQAALLAEM 347 >gi|118588514|ref|ZP_01545923.1| peptide chain release factor 1 [Stappia aggregata IAM 12614] gi|118439220|gb|EAV45852.1| peptide chain release factor 1 [Stappia aggregata IAM 12614] Length = 357 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 201/353 (56%), Positives = 273/353 (77%), Gaps = 2/353 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ ++ L +RFAE+E MS +P AY+KL+ EYA + P++ KI + +Q+ Sbjct: 1 MLARHKLDTLLDRFAELEHMMSANPDPGAYVKLSREYAGLEPLVGKIRALIKAEQDLAGA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +SD+E+R+LA++E +E+ + EL ++ LLPKD D ILE+RAGTGG Sbjct: 61 KALLQDPSSDAEMRELAEMERDELEERVEELAQDVRIGLLPKDEADSNDAILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA L+ WKVE+LS+S+ + GGYKE++A++SG VF+++KFESGV Sbjct: 121 DEAALFAGDLFRMYQRYAELQGWKVEILSASEGEVGGYKEVIASVSGENVFAKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTSAATVAVLP+A ++D+D+ D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPATESGGRIHTSAATVAVLPQAEDVDIDVQESDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQH+N+ RAM++LRAR+YD ER+R A+ER+ R+LQ+GSGD Sbjct: 241 AVRITHLPTGIVVAVQDERSQHKNKARAMQLLRARIYDEERERAASERTEARRLQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIG 353 RSERIRTYN+ QGR+TDHRI LTLYKLE +L G + ++I PL+ HQA ++ Sbjct: 301 RSERIRTYNYPQGRVTDHRIGLTLYKLEQILSGEALGEVIEPLILDHQASLLA 353 >gi|320529373|ref|ZP_08030461.1| peptide chain release factor 1 [Selenomonas artemidis F0399] gi|320138339|gb|EFW30233.1| peptide chain release factor 1 [Selenomonas artemidis F0399] Length = 354 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 251/356 (70%), Gaps = 8/356 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ + +++ E+E +S+ + + + T E+AA++PI++ Y + ++ Sbjct: 1 MLS--KLTAVADKYRELEALLSDPTVMADMARWQRYTREHAALTPIVTAYEAYRKAEETV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D+E+++L E+ A E E L E+ LLLP+D +DDK+ I+EIR G Sbjct: 59 AEDKEMLAEA--DAEMKELLLEEIAAAEAERERLAKELPILLLPRDPNDDKNVIVEIRGG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF LFRMY RYA + W+ E+LSS++ + GG+KEI ++G G +S++K+E Sbjct: 117 VGGEEAALFAASLFRMYARYAERQGWRTEILSSNETEIGGFKEISFLVTGAGAYSKLKYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQR+P TE+ GR+HTSA TVAVLPEA +++V I D+RIDT ASG+GGQ+VN Sbjct: 177 SGTHRVQRIPVTESGGRIHTSAVTVAVLPEAEDVEVTIDPNDLRIDTYCASGAGGQYVNR 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T++A+RITH+PTGI+V EKSQ +N+ +AMKVLRAR+YD ++ A+ +A+R+ Q+G Sbjct: 237 TETAIRITHLPTGIVVQCQDEKSQLKNKEKAMKVLRARIYDRAQQEQADAVAADRRSQVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SGDRSERIRTYNF QGR+TDHRI LTLYK++ VL G +++++ L+TA QA+ + Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRIGLTLYKIDAVLDGELEELLAALITADQAERLKQ 352 >gi|239832947|ref|ZP_04681276.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301] gi|239825214|gb|EEQ96782.1| peptide chain release factor 1 [Ochrobactrum intermedium LMG 3301] Length = 357 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 216/357 (60%), Positives = 278/357 (77%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L RF+ IE +M+ +P + Y+KL EY+ + ++ KI ++E Sbjct: 1 MTALPQDRMDQLLKRFSMIESQMANNPDSETYVKLASEYSELQEVVGKIRELTDARREAV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D +D+E+R LA E+ +EK I LE E+ LLLPKD D+K+ ILEIRAGT Sbjct: 61 DLAAMRDDAATDAEMRALALEELPEVEKRIGTLEQEVQILLLPKDAADEKNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 121 GGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ ERS +R+ Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAETERSESRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLTELGQ 357 >gi|319899228|ref|YP_004159321.1| peptide chain release factor 1 [Bartonella clarridgeiae 73] gi|319403192|emb|CBI76751.1| peptide chain release factor 1 [Bartonella clarridgeiae 73] Length = 357 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 221/356 (62%), Positives = 286/356 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+E+P+ + Y+KL EYA + PII I + +E Sbjct: 1 MVSLPKDRMKQLEKRFETIESQMAENPNAETYVKLASEYAELQPIIVLIRALNSLCKEIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D+E+R+LAQ E+ ++ +++++LE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELETIISDTQTDTEMRNLAQEELSSLYQKVQQLEQELQILLLPKDIADEKSVIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF G+LFRMYERYA WKVEV+S SD + GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFAGNLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++IN L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEGDLNELINALISDHQTTLLIELE 356 >gi|225175858|ref|ZP_03729851.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1] gi|225168782|gb|EEG77583.1| peptide chain release factor 1 [Dethiobacter alkaliphilus AHT 1] Length = 356 Score = 295 bits (756), Expect = 5e-78, Method: Composition-based stats. Identities = 178/352 (50%), Positives = 253/352 (71%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + RF E+E +S+ + D + KLT+E++ +S +++ Y Q +Q+ + Sbjct: 3 DKLKATEERFDELEKLISDPEVIARQDEWRKLTKEHSRLSEVVNAYREYQQVEQDLAEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ + E+ A ++ EL ++ LLLP+D +DDK+ I+E+RAGTGG Sbjct: 63 EMLRD-GGDEEMSRFLKDEITANTEKKEELTEKLRLLLLPRDPNDDKNVIVEVRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA + WK EVL +++ D GG+KE+V I G G +SR+KFESGVH Sbjct: 122 EAALFAGDLFRMYTRYAERQGWKTEVLDANETDIGGFKEVVFAIEGDGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSAATVAVLPEA +++VDI D+RID +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSAATVAVLPEAEDVEVDINQNDLRIDVFCSSGPGGQSVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+P+GI+V EKSQH+N+ +AM+VLRARL++ ++ A E++A RK Q+GSGDR Sbjct: 242 VRITHLPSGIVVSCQDEKSQHKNKDKAMRVLRARLFEKAQEEAAAEQAAARKTQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF QGR++DHRI +TLYKL+ L G +D++++ L+T+ QA+++ Sbjct: 302 SERIRTYNFPQGRVSDHRIGMTLYKLDQFLDGDLDEMVDALITSEQAELLKQ 353 >gi|110833384|ref|YP_692243.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2] gi|119361504|sp|Q0VS77|RF1_ALCBS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110646495|emb|CAL15971.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2] Length = 361 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ +S+ + + + L+ EYA I P++ Y Q + Sbjct: 1 MKASLQGKLDKLADRFEELAGLLSDPDVISNQNQFRDLSREYAEIDPVVKCYRQYQQAVE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +SD+++R++ E ++ + L E+ L+LPKD D + LE+R Sbjct: 61 DHGAAKAM--QDDSDADMREMGAEEARDAQERMEALAAELQKLMLPKDPRDGANVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA R WKVE++S+S+ + GGYKE++A + G GV+SRMK Sbjct: 119 AGTGGDEAAIFAGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVA++ EA ++ I ED+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAIMAEAEDLGDIKIRTEDLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++V E+SQH+N+ RAM +L A+LYD ++ E++A RK Sbjct: 239 VNTTDSAVRITHLPTGVVVECQDERSQHKNKARAMSLLSAKLYDAQQNAAHAEQAAERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY+L +++G +D+I+ LL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYRLNEIVEGDLDEILGALLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|73542728|ref|YP_297248.1| peptide chain release factor 1 [Ralstonia eutropha JMP134] gi|119361585|sp|Q46WS9|RF1_RALEJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|72120141|gb|AAZ62404.1| bacterial peptide chain release factor 1 (bRF-1) [Ralstonia eutropha JMP134] Length = 360 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++ ++D Y KL+ E+A +SP+ + Y Q + Sbjct: 1 MKASMLAKLDQLAERLEEVNALLAREDATANIDQYRKLSREHAELSPVAEQYGFYRQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++D A E+ + + + LE + LLLPKD +DD++ ILEIR Sbjct: 61 DLATAQALL----DDPEMKDFAADEIASARERLESLEGSLQKLLLPKDPNDDRNLILEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S++D GGYKE++ I+G FSR+K Sbjct: 117 AGTGGEESALFAGDLLRMYTRFAERQRWQVEIMSESESDLGGYKEVIVRIAGDAAFSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA E+ DV+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEADEVGDVEINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V ++SQH+N+ +AMKVL AR+ D + + + ++ R+ Sbjct: 237 VNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDKAMKVLAARIKDQQMRAAQAKEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G ++++++ L HQA + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDMIMDGDLEELVSALAAEHQADQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|254253376|ref|ZP_04946694.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158] gi|124895985|gb|EAY69865.1| Peptide chain release factor 1 [Burkholderia dolosa AUO158] Length = 360 Score = 295 bits (755), Expect = 6e-78, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNELLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D +RD A+ E+ + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DETAAQELLA----DPSMRDFAEDEIRSARDRMARLELELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|322513486|ref|ZP_08066596.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976] gi|322120705|gb|EFX92589.1| peptide chain release factor RF1 [Actinobacillus ureae ATCC 25976] Length = 360 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + + ++ + ++EY+ + +++ + + + Sbjct: 1 MKESIINKLESLSERHEELQALLGDPSVINDQDKFRAYSKEYSQLEEVVTTFNRWKKLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQILL----DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGRITDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRITDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|170723617|ref|YP_001751305.1| peptide chain release factor 1 [Pseudomonas putida W619] gi|229470352|sp|B1JEP6|RF1_PSEPW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169761620|gb|ACA74936.1| peptide chain release factor 1 [Pseudomonas putida W619] Length = 360 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EY+ + P+I + + + Sbjct: 1 MKASLLNKLDTLQDRFEELTALLGDAEVISDQARFRAYSREYSEVEPVIGAYKEWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D ++R++A EV ++++ LE+++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKDA--DPDMREMAVEEVREAKEQLVGLESQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEIIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|303228461|ref|ZP_07315294.1| peptide chain release factor 1 [Veillonella atypica ACS-134-V-Col7a] gi|303230754|ref|ZP_07317501.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6] gi|302514514|gb|EFL56509.1| peptide chain release factor 1 [Veillonella atypica ACS-049-V-Sch6] gi|302516963|gb|EFL58872.1| peptide chain release factor 1 [Veillonella atypica ACS-134-V-Col7a] Length = 360 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 175/357 (49%), Positives = 250/357 (70%), Gaps = 4/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++++F ++E R+S+ + D + KLT ++A +S + Y + Sbjct: 1 MLVDKLQVIEDKFMDLEQRISDPEVIARQDEWRKLTRQHAQLSETVEAFREYKKVLAGID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + VI D D E R++AQ E+ ++ + ELE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 EAMEVIEDKTMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY +YA + W+ E++ +++ + GG+KE+V ++ G V+S+MKFES Sbjct: 121 GGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVVFSVDGENVYSKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS TVAVLPE ++D++I +D++IDT RASG+GGQH+N T Sbjct: 181 GVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEINDKDLKIDTYRASGAGGQHINKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+PTGI+V ++SQ QNR +AM+VLRA+L D + +A+RK Q+G+ Sbjct: 241 ESAVRITHLPTGIVVACQDQRSQLQNREKAMRVLRAKLQDKAEQEATASMAADRKSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ +L G +D+II L A QA + A+ Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLYKLDAILNGDLDEIIQALNAADQAAKMQEAN 357 >gi|83951817|ref|ZP_00960549.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM] gi|83836823|gb|EAP76120.1| peptide chain release factor 1 [Roseovarius nubinhibens ISM] Length = 349 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 191/353 (54%), Positives = 246/353 (69%), Gaps = 6/353 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ + RF IE +MS +L EYA + P++ +I Y + Sbjct: 1 MLPQDRLDQILQRFEFIEAQMSAGSG--DIAQLGREYAELRPVVEEIRAYRAALDAAEQA 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D E+R+LA+ E+ ++ E+ E + LLPKD D + I+EIR GTGG Sbjct: 59 EAMLG----DPEMRELAEDELRTLKAELPGREKALQLALLPKDEADARPAIIEIRPGTGG 114 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY RYA R W+ EV+ + + GG KE V + G VF+R+K+ESGV Sbjct: 115 EEAALFAGDLLRMYARYAEARGWQFEVIEEAQTELGGIKEAVVHVKGAHVFARLKYESGV 174 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMRASG+GGQHVNTTDS Sbjct: 175 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIHIDPSDIRIDTMRASGAGGQHVNTTDS 234 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIP+GI+VTSSEKSQH+NR AM+VL+ RLYD+ER+++ + RSA+R Q+GSGDR Sbjct: 235 AVRITHIPSGIVVTSSEKSQHRNREIAMQVLKTRLYDLERQKVHDARSADRAAQVGSGDR 294 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF QGR+TDHRINLTLYKL+ V+ G +DDII+ L T QA ++ Sbjct: 295 SERIRTYNFPQGRMTDHRINLTLYKLDQVMAGDLDDIIDALTTDAQAALLAEM 347 >gi|95929013|ref|ZP_01311758.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684] gi|95134914|gb|EAT16568.1| peptide chain release factor 1 [Desulfuromonas acetoxidans DSM 684] Length = 358 Score = 295 bits (755), Expect = 7e-78, Method: Composition-based stats. Identities = 185/358 (51%), Positives = 253/358 (70%), Gaps = 6/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ ++ +RF E+E +S+ + + +LT E+A +S + Y Q +QE Sbjct: 1 MAIFDKLEEVVDRFQEVEGLLSDPTVLSDQNKFRELTREHAELSEPVEVYRRYRQIQQEI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D ++ D D ++R++A+ E+ A+E E L ++ L+LPKD +D K+ ILEIRAG Sbjct: 61 EDNRELMRD--DDPDMREMAREELPALEDECEHLAEKLTLLMLPKDPNDGKNIILEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFR Y RYA +WKVE++SSS++ GG+KE++A ISG V+SR+K+E Sbjct: 119 TGGDEAALFAGDLFRAYSRYAEKHRWKVEIMSSSESGVGGFKEVIAMISGENVYSRLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSA TVAVLPEA E+D++I D+RID RASG+GGQHVN Sbjct: 179 SGTHRVQRVPETETQGRIHTSACTVAVLPEAEEVDLEINPSDLRIDLYRASGAGGQHVNK 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITHIPTG++V EKSQH+N+ RAMKVLR+R+ D E +A+RK Q+G Sbjct: 239 TESAVRITHIPTGVVVACQDEKSQHKNKARAMKVLRSRILDAMEAEKHAEMAADRKSQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR TDHRI LTLYKL+ ++QG +D++ + L T +QA+++ Sbjct: 299 SGDRSERIRTYNFPQGRCTDHRIGLTLYKLDAIMQGDLDEVFDALTTHYQAELMAGQE 356 >gi|167769908|ref|ZP_02441961.1| hypothetical protein ANACOL_01249 [Anaerotruncus colihominis DSM 17241] gi|167667899|gb|EDS12029.1| hypothetical protein ANACOL_01249 [Anaerotruncus colihominis DSM 17241] Length = 358 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 242/355 (68%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ EI R+ E + Y L +EY+ ++PI+ K Y K + Sbjct: 3 DKLDSVAARYEEISRRLMEPDVTGDPEQYASLMKEYSRLTPIVEKYRAYRTAKDACDEAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + D E+R+LAQ ++ + + E+ LLLP+D +DDK+ I+EIR G GG Sbjct: 63 EVLDESGVDREMRELAQEQLDENRAVLDQTAQELKILLLPRDPNDDKNVIVEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G L+RMY YA W+ EV+S+++ + GGYKEI +I+G G +SR+K+ESGVH Sbjct: 123 EAALFAGVLYRMYTMYAEGLGWQCEVISANETELGGYKEICFSITGEGAYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS TVAVLPEA E++ ++ D++ID R+SG+GGQHVN T SA Sbjct: 183 RVQRVPETETQGRIHTSTVTVAVLPEAEEVEFELDPRDLQIDVFRSSGAGGQHVNKTSSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+TH+PTG++V E+SQ++N+ RA+KVLRARL D++ + ++ + R+LQ+G+GDR Sbjct: 243 IRVTHLPTGMVVECQDERSQYKNKDRALKVLRARLLDIKVREQNDKIATERRLQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRI LTLYKL+ VL G + ++ + L+T QA+ + SA E Sbjct: 303 SERIRTYNYPQGRVTDHRIGLTLYKLDSVLNGDLAELFDALMTFDQAEKLKSAEE 357 >gi|229542476|ref|ZP_04431536.1| peptide chain release factor 1 [Bacillus coagulans 36D1] gi|229326896|gb|EEN92571.1| peptide chain release factor 1 [Bacillus coagulans 36D1] Length = 356 Score = 295 bits (754), Expect = 8e-78, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 246/354 (69%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ V+ KL ++E + + + Y + +++ QD Sbjct: 3 DRLQAVEDRYEKLNELLSDPEIVNDPKKLREYSKEQSDLQETVQVYREYKEVQKQLQDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + D E++D+ + E+ +E +I E E + LLLPKD +D+K+ I+EIR GG Sbjct: 63 SLLSEK-LDPEMKDMVKEEIHELESKIPEYEERLKILLLPKDPNDEKNVIVEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK++V+ ++ GGYKEIV ++G+G +S++KFE+G H Sbjct: 122 EAALFAGDLYRMYMRYAESQGWKIDVIEANVTGIGGYKEIVFMVNGKGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++VDI +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ VL G +D+II+ L+ Q+K + S + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGKLDEIIDALILEDQSKKLESVN 355 >gi|312115445|ref|YP_004013041.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC 17100] gi|311220574|gb|ADP71942.1| peptide chain release factor 1 [Rhodomicrobium vannielii ATCC 17100] Length = 361 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 208/355 (58%), Positives = 273/355 (76%), Gaps = 1/355 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + ++ L R+ I+ ++SE + + KL++E++ + P+++ I + ++E Sbjct: 1 MASIPKDKLKRLVGRWETIQAQLSEGCDQETFKKLSKEFSDLDPLVAAIKTLEAAEEERD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 L +I D ++ ++ +LA+ E+ A E + +LE+E+ +LLPKD D+KS ILE+RAGT Sbjct: 61 SLRQMIEDPAAEPDMAELAREELEAAEPRVEQLEHELQIMLLPKDAADEKSAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLFRMY+RYA L+ WKV VLS SD D GG++EIVA+ISG+GVF+RMKFES Sbjct: 121 GGEEAALFAADLFRMYQRYADLKGWKVNVLSVSDADAGGFREIVASISGKGVFARMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPEA E+DV+I +DIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETENQGRIHTSAATVAVLPEAEEVDVEIREQDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGI+VTSSEKSQHQNR RAM+VLRARL+D+ER R+ R+A RK QIGSG Sbjct: 241 DSAVRITHIPTGIIVTSSEKSQHQNRARAMQVLRARLFDMERTRIDEARAAERKDQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 DRS+RIRTYNF QGR+TDHR+N+TLY L +++G +D II+ L+T QA + + Sbjct: 301 DRSQRIRTYNFPQGRVTDHRVNVTLYNLPQIMEGEGLDTIIDALITERQAGQLAA 355 >gi|153007050|ref|YP_001381375.1| peptide chain release factor 1 [Anaeromyxobacter sp. Fw109-5] gi|166223527|sp|A7HI45|RF1_ANADF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|152030623|gb|ABS28391.1| peptide chain release factor 1 [Anaeromyxobacter sp. Fw109-5] Length = 372 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 162/361 (44%), Positives = 235/361 (65%), Gaps = 9/361 (2%) Query: 3 FLSHK---QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKK 56 LS + ++ ++ RF E+ +S+ D + K+++E A++ P + + Y + Sbjct: 1 MLSQEVLKKLEAIEQRFEELTALLSDPSVASNGDRFRKVSKERASLEPTVEALRAYRKLV 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + D ++ + D ++R++A+ E+ + ++ E ++ L+PKD D+K ILEI Sbjct: 61 TDIGDNEALLEEK--DPDLREMAKEELAQLRPQVDPAEEQLKLYLVPKDPADEKDVILEI 118 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 RAG GG EA LF +L RMY RYA R W+ EV +S + GG K++ I+G V+S + Sbjct: 119 RAGAGGDEAGLFAAELLRMYLRYAERRGWRTEVADTSAGNLGGVKDVTVNIAGDSVYSWL 178 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFESGVHRVQRVPATEA GR+HTS TVAV+PEA +ID+ + DI +D R++GSGGQ Sbjct: 179 KFESGVHRVQRVPATEAQGRIHTSTVTVAVMPEAEDIDIQVSPADIEMDVFRSTGSGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+TH PTGI+V EKSQ +NR AM++LRA+LY++E +R + R A RK Sbjct: 239 VNTTDSAVRLTHKPTGIIVKCQQEKSQLKNRNMAMRMLRAKLYEIELERQRSARDAARKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+G+GDRSE+IRTYNF Q R+TDHRIN T + L V+ G + D+I+ T + A+ + A Sbjct: 299 QVGTGDRSEKIRTYNFPQDRLTDHRINYTRHNLPAVMDGDVQDVIDACRTFYAAQALREA 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|241760302|ref|ZP_04758397.1| peptide chain release factor 1 [Neisseria flavescens SK114] gi|241319180|gb|EER55658.1| peptide chain release factor 1 [Neisseria flavescens SK114] Length = 358 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + +D Y KLT E+A I+P++ Y Q + Sbjct: 1 MKPSILEKLQQLSDRLEEVTHLLGQPEATSDMDNYRKLTREHAEITPVVETFHQYMQAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD E++D A E+ A + +I EL+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DMAEAQEML----SDPEMKDFAAEEIEAAKAKIDELDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIIGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATENQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|192360464|ref|YP_001981172.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107] gi|238692456|sp|B3PJP4|RF1_CELJU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|190686629|gb|ACE84307.1| peptide chain release factor 1 [Cellvibrio japonicus Ueda107] Length = 360 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 252/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ LK R+ E+ +SE+ ++ + L++EYA + P++ Y Q Sbjct: 1 MKSSILEKLERLKERYEEVSALLSEADVINNQARFRDLSKEYAELEPVVVAYKGYLQLLA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +I + D+++R++A+ E+ E + E E+ LLLPKD +D+K+C LE+R Sbjct: 61 DIEEAKHLIAE--GDADMREMAEEELEGCEARLEPTELELQKLLLPKDPNDEKNCYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE+LS S+ + GG+KEI++ +SG GV+S++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAETQGWRVEILSQSEGEHGGFKEIISLVSGSGVYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E +V+I D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADELEEVNINKADLRIDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V E+SQH+NR RAM +L +L ++ + S R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDERSQHKNRARAMSLLATKLKTMQEEAAHKSISEERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ V+QG ++ +I PL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDAVMQGDLEPVIGPLANEYQADQLAAI 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|254717939|ref|ZP_05179750.1| peptide chain release factor 1 [Brucella sp. 83/13] Length = 351 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 217/349 (62%), Positives = 276/349 (79%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L RF+ IE +M+ +P D Y+KL EY+ + ++ KI ++E DL + D Sbjct: 1 MDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARKEASDLAAMRDD 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGTGG EAALF Sbjct: 61 ASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGTGGLEAALF 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFESGVHRVQRV Sbjct: 121 AGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFESGVHRVQRV 180 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTTDSAVRITH Sbjct: 181 PETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITH 240 Query: 249 IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 IPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSGDRSERIRT Sbjct: 241 IPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRT 300 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 YNF QGR+TDHRINLTLYKL+ V++G +D+++N L++ HQ ++ E Sbjct: 301 YNFPQGRVTDHRINLTLYKLDRVMEGDLDELVNALISDHQTALLAELGE 349 >gi|158426116|ref|YP_001527408.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571] gi|158333005|dbj|BAF90490.1| peptide chain release factor 1 [Azorhizobium caulinodans ORS 571] Length = 357 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 196/358 (54%), Positives = 260/358 (72%), Gaps = 6/358 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + L ++ L R AE+E ++ + Y++L E++ +SP++ ++ +++ D Sbjct: 3 IELPTAKLDQLVARHAEVEALLAAGAEGEEYVRLGREFSDLSPVVEQVRALRAAERDLAD 62 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+RDLAQ EV +E E+ L E+ LLPKD D++ ILE+RAGTG Sbjct: 63 ARELLA----DPEMRDLAQSEVTRLEAELETLAKEVRLALLPKDAMDERGVILEVRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYAA + W VE+LS S+ GGYKE+VA + GRG ++R+KFESG Sbjct: 119 GDEAALFAGDLFRMYARYAAEKGWSVELLSESEGTVGGYKEVVAAVHGRGAYARLKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE SGR+HTSAATVAVLPEA ++DVDI D+RID RA G+GGQHVN T+ Sbjct: 179 VHRVQRVPDTETSGRIHTSAATVAVLPEAEDVDVDINESDLRIDVYRAQGAGGQHVNKTE 238 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V E+SQH+N+ RAM +LR+R+ D ER++ R+A+RK Q+GSG Sbjct: 239 SAVRITHIPTGMVVAVQDERSQHRNKARAMALLRSRMLDEERQKADANRAADRKGQVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+II+PLLT HQA ++ +A E Sbjct: 299 DRSERIRTYNFPQGRVTDHRINLTLYKLDEVMTGQALDEIIDPLLTEHQASLMAAADE 356 >gi|146306094|ref|YP_001186559.1| peptide chain release factor 1 [Pseudomonas mendocina ymp] gi|166223589|sp|A4XR61|RF1_PSEMY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145574295|gb|ABP83827.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas mendocina ymp] Length = 360 Score = 295 bits (754), Expect = 9e-78, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +RF E+ + ++ + + ++EYA I P+I+ + + Sbjct: 1 MKASLLNKLDNLSDRFEELTALLGDAEVISKQTQFRAYSKEYAEIEPVIATFRELRKVQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + SD ++R++A+ EV ++ + LE+++ +LLPKD +D ++ LE+R Sbjct: 61 DLEGAQALLKE--SDPDLREMAEEEVAQAKEALTTLEDKLQRMLLPKDPNDGRNVYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VEVLS+++ + GG+KE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVLSANEGEHGGFKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG +V E+SQH+NR +AM L A+L D + E S RKL Sbjct: 239 VNTTDSAIRITHIPTGTVVECQEERSQHKNRAKAMAWLAAKLQDQQEAAAHKEISETRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V+ G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLSEVMAGGVEAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|332969013|gb|EGK08053.1| peptide chain release factor RF1 [Kingella kingae ATCC 23330] Length = 375 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 252/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ + ++D Y KL +E+A ++PI+ Y Q + Sbjct: 18 MKPSILDKLQTLADRLEEVTALLGSPEATANMDTYRKLNQEHAELTPIVETYQQYRQAES 77 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD ++++ A E+ A + +I +L+ E+ LLLPKD DDDK+ +EIR Sbjct: 78 DLTDAQEML----SDPDMKEFAAEEIEATKIKIEQLDFELQKLLLPKDADDDKNIFIEIR 133 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY R+A +W+ E++S+S++D GGYKE++ + G G +S++K Sbjct: 134 AGTGGDEAALFAGDLLRMYSRFAERNRWQTEIVSASESDLGGYKEVIVRLIGLGAYSKLK 193 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E ++ + D+RIDT RASG+GGQH Sbjct: 194 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEEIQLNPNDLRIDTFRASGAGGQH 253 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 254 INKTDSAIRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDKQKREAQAKEAAERKS 313 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I + L+ HQA+++ + Sbjct: 314 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITSALIAEHQAELLAAM 373 Query: 356 SE 357 + Sbjct: 374 GD 375 >gi|300025029|ref|YP_003757640.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC 51888] gi|299526850|gb|ADJ25319.1| peptide chain release factor 1 [Hyphomicrobium denitrificans ATCC 51888] Length = 359 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 209/357 (58%), Positives = 271/357 (75%), Gaps = 1/357 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L R+ I+ ++ S Y+KLT+E+A +SP ++I + + E Sbjct: 1 MTSLPRDKLDRLFERWMAIQDELNHGVSQAQYVKLTKEFAELSPAAAQIEALRKAEAESA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D ++D ++ DLA E A+ + I LE ++ LLPKD D+KS ILE+RAGT Sbjct: 61 DLEQLLRDPSADKDMADLAYAERAALAERIGGLEQQLRIALLPKDAADEKSAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLFRMY RYA LR WKVEV+S+S+ND GGYKEIVA+I+G GVF+R+KFES Sbjct: 121 GGDEAALFAADLFRMYSRYADLRGWKVEVISASENDLGGYKEIVASITGEGVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGR+HTSAATVAVLPEA ++++DI +DIRIDTMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPATEASGRIHTSAATVAVLPEAEDVEIDIKPDDIRIDTMRAGGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +SAVRITH+PTGI+V S+EKSQHQNR AM VL+AR+Y++ER++ A ERS RK Q+GSG Sbjct: 241 ESAVRITHLPTGIVVVSAEKSQHQNRRLAMNVLKARVYELEREKAATERSDARKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 DRS+RIRTYNF QGR+TDHRINLTLY L+ V+ G +D +++ L+T HQA M+ + Sbjct: 301 DRSQRIRTYNFPQGRVTDHRINLTLYNLDEVMVGNGLDALVDALITDHQATMLAELN 357 >gi|161621297|ref|YP_585342.2| peptide chain release factor 1 [Cupriavidus metallidurans CH34] gi|119361586|sp|Q1LIF3|RF1_RALME RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 360 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++ ++D Y KL+ E+A +SP+ + Y Q + Sbjct: 1 MKASISTKLDQLAERLDEVNALLAREDATANMDQYRKLSREHAELSPVAEQYGQYRQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++ A E+ A + ++ LEN + LLLPKD +DD++ +LEIR Sbjct: 61 DLATAQALL----DDPEMKEFAADEIDAARERLQSLENSLQTLLLPKDPNDDRNLLLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RYA R+W+VE++S S +D GGYKE++ I+G FSR+K Sbjct: 117 AGTGGEESALFAADLLRMYTRYAERRRWQVEIMSESPSDLGGYKEVIVRIAGDAAFSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E+ +V+I D+R+DT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADEVGEVEINPSDLRVDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V ++SQH+N+ +AMKVL AR+ D++ + + + R+ Sbjct: 237 VNKTDSAVRLTHLPTGIVVECQDDRSQHRNKEKAMKVLAARIKDMQLRAAQAKEANTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D++I+ L HQA + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDMIMDGDLDELISALSAEHQADQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|83859678|ref|ZP_00953198.1| peptide chain release factor 1 [Oceanicaulis alexandrii HTCC2633] gi|83852037|gb|EAP89891.1| peptide chain release factor 1 [Oceanicaulis alexandrii HTCC2633] Length = 357 Score = 295 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 199/357 (55%), Positives = 266/357 (74%), Gaps = 2/357 (0%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + ++ + +RF ++E R+S + D +KL++E+A + + K ++ ++ Sbjct: 1 MSIQDAKLDQVIDRFDQVEARLSAAADPDEIVKLSKEHAELKLVAEKARELKTARESFEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD ++ +LA+ E ++K + LE E+ LL+PKD DDD S +LEIRAGTG Sbjct: 61 AEAIIED-GSDRDMVELAEEERQELKKRLPGLERELQLLLIPKDRDDDASIMLEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMYERYA+ WKV+V+ +S+ + GGYKEIVA++SG+GVF +MKFESG Sbjct: 120 GDEAALFAGDLFRMYERYASNHGWKVDVVEASEAEVGGYKEIVASVSGKGVFGKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTSAATVAVLPE +++DI EDIRIDTMRASG+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSAATVAVLPEPENVEIDIKDEDIRIDTMRASGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 SAVR+THIPTGI+V SSEKSQHQNR AM+VL+ARLY+ ER+ R+A RK Q+GSGD Sbjct: 240 SAVRMTHIPTGIVVVSSEKSQHQNRAIAMQVLKARLYEKERREKDEARAAERKGQVGSGD 299 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR++DHRINLTLYKL+ +L G +D++I+ LL+ QA + + E Sbjct: 300 RSERIRTYNFPQGRVSDHRINLTLYKLDEILSGDALDEVIDALLSEDQAAKLAAMEE 356 >gi|329119839|ref|ZP_08248513.1| peptide chain release factor RF1 [Neisseria bacilliformis ATCC BAA-1200] gi|327463995|gb|EGF10306.1| peptide chain release factor RF1 [Neisseria bacilliformis ATCC BAA-1200] Length = 362 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ + +D Y +L +E+A ++P++ Y + + Sbjct: 5 MKPSILDKLQNLAHRLEEVTALLGSPEAVADMDNYRRLNQEHAELTPVVETYRAYTRAQS 64 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD +++D A E A + +I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 65 DLADAQEML----SDPDMKDFAAEETEAAKAKIDALDLELQKLLLPKDADDDKNIFIEIR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S++++D GGYKE++ + G G +S++K Sbjct: 121 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESDLGGYKEVIVRLIGLGAYSKLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 181 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 241 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I L+ HQA+++ + Sbjct: 301 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITAALIAEHQAELLAAM 360 Query: 356 SE 357 + Sbjct: 361 GD 362 >gi|282850388|ref|ZP_06259767.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745] gi|294792026|ref|ZP_06757174.1| peptide chain release factor 1 [Veillonella sp. 6_1_27] gi|294793891|ref|ZP_06759028.1| peptide chain release factor 1 [Veillonella sp. 3_1_44] gi|282579881|gb|EFB85285.1| peptide chain release factor 1 [Veillonella parvula ATCC 17745] gi|294455461|gb|EFG23833.1| peptide chain release factor 1 [Veillonella sp. 3_1_44] gi|294457256|gb|EFG25618.1| peptide chain release factor 1 [Veillonella sp. 6_1_27] Length = 360 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 172/357 (48%), Positives = 252/357 (70%), Gaps = 4/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++++F ++E R+S+ + D + KLT ++A +S + Y + Sbjct: 1 MLVDKLQVIEDKFMDLEQRISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVLSGID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + VI D + D E R++AQ E+ ++ + ELE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 EAMEVIEDKSMDEEFREMAQEELKDLKPQKEELEEKLQVLLLPKDPNDDKNIIIEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY +YA + W+ E++ +++ + GG+KE++ ++ G V+S+MKFES Sbjct: 121 GGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS TVAVLPE ++D+++ +D++IDT RASG+GGQH+N T Sbjct: 181 GVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+P+GI+V ++SQ QNR +AM+VLRA+L D + + +A+RK Q+G+ Sbjct: 241 ESAVRITHLPSGIVVACQDQRSQLQNREKAMRVLRAKLQDQAEQEAISSMAADRKSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ +L G +D+II L A QA + A+ Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLYKLDAILNGDLDEIIQALNAADQAAKMQEAN 357 >gi|221201722|ref|ZP_03574760.1| peptide chain release factor 1 [Burkholderia multivorans CGD2M] gi|221207203|ref|ZP_03580213.1| peptide chain release factor 1 [Burkholderia multivorans CGD2] gi|221213331|ref|ZP_03586306.1| peptide chain release factor 1 [Burkholderia multivorans CGD1] gi|221166783|gb|EED99254.1| peptide chain release factor 1 [Burkholderia multivorans CGD1] gi|221172791|gb|EEE05228.1| peptide chain release factor 1 [Burkholderia multivorans CGD2] gi|221178538|gb|EEE10947.1| peptide chain release factor 1 [Burkholderia multivorans CGD2M] Length = 360 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D +RD A+ E+ + + + LE E+ +LLPKD +DD++ +EIR Sbjct: 61 DETAAQELLA----DPSMRDFAEEEIRSARERMARLEVELQKMLLPKDPNDDRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|261867616|ref|YP_003255538.1| peptide chain release factor 1 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261412948|gb|ACX82319.1| peptide chain release factor 1 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 360 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EYA + ++ + ++Q Sbjct: 1 MKPSIINKLDSLKERYEELEALLGDASVISDQDKFRAYSKEYAQLEDVVKSFNRWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + E+ ++E + LLLPKD +D+ +C LEIR Sbjct: 61 NLEEAQLLL----DDPEMKEMAQMEIEESKAELEQVEQHLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VEVLS ++++ GG+KEI+A +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAETKRWRVEVLSENESEQGGFKEIIALVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELLESEMPEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG++V E+SQH+N+ +A+ VL +RL E++++A E++ R+ Sbjct: 237 INKTDSAVRITHIPTGMVVECQDERSQHKNKAKALSVLASRLVQQEQEKLAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G IDD+I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDDLIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|332558342|ref|ZP_08412664.1| peptide chain release factor 1 [Rhodobacter sphaeroides WS8N] gi|332276054|gb|EGJ21369.1| peptide chain release factor 1 [Rhodobacter sphaeroides WS8N] Length = 351 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 192/354 (54%), Positives = 252/354 (71%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E R+S + L+ EYA + P++++IS Y ++ + Sbjct: 1 MVPMDRLLQIVRRFEFLEARLSAGAAPAEIAALSREYAELKPVVAEISAYRTALEDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD E+R LA+ E+ A+ I +E + LLPKD D + ILEIR GTGG Sbjct: 61 EAML----SDPEMRALAEDEIPALRARIPGMEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ E+L + ++ GG +E A I G G F+R+K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIREATARIEGEGAFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D++IP DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAADIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLRARLYD+ER+R+A+ RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHRNREIAMQVLRARLYDLERQRLADARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + ++I+ L QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLSEVISALTAHDQAARLAEME 350 >gi|323142096|ref|ZP_08076944.1| peptide chain release factor 1 [Phascolarctobacterium sp. YIT 12067] gi|322413483|gb|EFY04354.1| peptide chain release factor 1 [Phascolarctobacterium sp. YIT 12067] Length = 355 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++R+ ++E ++S+ + K T+ +A + PI++ Y + + Sbjct: 1 MLDKLQALEDRYLDLEAKISDPEVIADQTNWLKATKAHAKLEPIVTAYREYRDMIKARDE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+ ++A+ E+ ++ +I E E ++ LLLP D +DDK+ I+EIR G G Sbjct: 61 AEELLA-AGDDEELVEMAKEELKELKPQIEEYEEKLTILLLPSDPNDDKNVIVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G LFRMY RYA R W+VEV+ S+ + GG+KE+V ISG V+SRMKFESG Sbjct: 120 GDEAALFAGVLFRMYLRYAETRGWRVEVMDSNPTELGGFKEVVFQISGDSVYSRMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GRVHTS TVAVLPEA E+DV+I D+R+DT RA G+GGQ+VN T+ Sbjct: 180 VHRVQRVPETESQGRVHTSTVTVAVLPEAEEVDVEINPADLRVDTYRAGGAGGQYVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTGI+ EKSQ +NR + M+VLRAR+ + ++ + +RK Q+G+G Sbjct: 240 SAVRITHIPTGIVAQCQDEKSQLKNREKCMRVLRARILEQAQEEQRAATAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYN+ QGR+TDHRI LTL+KL+ ++ G +D+++ L+TA Q++ + Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGLTLHKLDSIVNGDLDELLGALITAKQSEQLRQ 353 >gi|49473852|ref|YP_031894.1| peptide chain release factor 1 [Bartonella quintana str. Toulouse] gi|61214617|sp|Q6G0R0|RF1_BARQU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|49239355|emb|CAF25688.1| Peptide chain release factor 1 [Bartonella quintana str. Toulouse] Length = 359 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 222/355 (62%), Positives = 283/355 (79%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+++P Y+KL EYA + PI++ I + E Sbjct: 1 MVSLPKDRMRQLEKRFEIIESQMAKNPDSGTYVKLASEYADLQPIVTSIRTLNALSIEIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D E+R+LAQ E+ + +++ +LE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELETIISDKLTDVEMRNLAQEELPPLFQKMEKLEKELQILLLPKDITDEKSAIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALFVGDLFRMYERYA WKVEV+S ++ + GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFVGDLFRMYERYANAYNWKVEVISLNEGEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE SGR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+E+K+ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIEQKKAESERSASRKNQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ +L+G +D++IN L++ +Q ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRILEGDLDELINALISDYQTALLTEM 355 >gi|315497942|ref|YP_004086746.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48] gi|315415954|gb|ADU12595.1| peptide chain release factor 1 [Asticcacaulis excentricus CB 48] Length = 358 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 195/357 (54%), Positives = 258/357 (72%), Gaps = 2/357 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ + +RF IE RM + +KL++E+A + P++ ++ + + Sbjct: 1 MIRLPQAKLDQVVDRFRMIEARMESATDGTEIVKLSKEHAELKPVVDAVTALLKARASGP 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I +D E+ LAQ E +++ + ELE + LL PKD D++ S ILE+RAGT Sbjct: 61 ELEELIAL--NDPELSPLAQEEFQELKERLPELERGVALLLAPKDKDENASAILEVRAGT 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY RYAA + W+VE+ S S+ D GGYKEI+A+++G GVF ++KFES Sbjct: 119 GGDEAALFAGDLFRMYSRYAASQGWRVEIDSISEGDAGGYKEIIASVTGDGVFGKLKFES 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEA GR+HTSAATVAVLPEA ++++DI +DIRIDT RASGSGGQHVN T Sbjct: 179 GVHRVQRVPATEAGGRIHTSAATVAVLPEAEDVEIDIQDKDIRIDTYRASGSGGQHVNKT 238 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+ TSSEKSQH NR AM+ L+ARLYD++R+ + RS RK Q+GSG Sbjct: 239 DSAVRITHLPTGIVATSSEKSQHMNRQIAMRNLKARLYDIQRQALDAARSDARKSQVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ QGR++DHRINLTLY L ++G +D +IN L+ QA + E Sbjct: 299 DRSERIRTYNYPQGRVSDHRINLTLYNLSQFMEGEMDQMINALIADDQAARLAMLEE 355 >gi|254362308|ref|ZP_04978420.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213] gi|153093888|gb|EDN74816.1| peptide chain release factor RF1 [Mannheimia haemolytica PHL213] Length = 360 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ + D + ++EY+ + ++ + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQLEEVVGTFNRWKKLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQLLL----DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|146277160|ref|YP_001167319.1| peptide chain release factor 1 [Rhodobacter sphaeroides ATCC 17025] gi|166223594|sp|A4WRK0|RF1_RHOS5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145555401|gb|ABP70014.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter sphaeroides ATCC 17025] Length = 351 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 189/354 (53%), Positives = 248/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E R+S + L+ EYA + P++++I+ Y ++ + Sbjct: 1 MVPMDRLLQIVRRFEFLEARLSAGAAPAEIAALSREYAELKPVVAEIAAYRTALEDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R LA+ E+ + I E+E + LLP+D D + ILEIR GTGG Sbjct: 61 EAMLA----DPEMRALAEDELPRLRARIPEMEQALRLALLPRDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ E+L + ++ GG +E A I G G F+R+K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEAQGWRFELLDLAPSELGGIREATARIEGEGAFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D+ IP DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAQGRIHTSAATVAVLPEAEEVDIAIPAADIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLRARLYD+ER+R+A RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIVVTSSEKSQHRNREIAMQVLRARLYDLERQRLAEARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + ++I L QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLAEVIAALTAHDQAARLAEME 350 >gi|212213424|ref|YP_002304360.1| peptide chain release factor 1 [Coxiella burnetii CbuG_Q212] gi|238058711|sp|B6J390|RF1_COXB2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|212011834|gb|ACJ19215.1| bacterial peptide chain release factor 1 [Coxiella burnetii CbuG_Q212] Length = 361 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 172/361 (47%), Positives = 251/361 (69%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R++EI +S+S ++ Y +L +EYA + PI+ + Q ++ Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R LA+ E+ + + ELE+++ LL+PKD +D+ + LEIR Sbjct: 61 AIESAEEMQQEK--DPELRKLAEEELEQLTLKKEELEDQLKLLLVPKDPNDELNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG+EAA+F GDLFRMY RYA + W+V ++S+ + + GG+KE++A + G GV+S++K Sbjct: 119 AGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE EID ++RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+N+ RAM +L+++L ER + E++A RK Sbjct: 239 VNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I PL+ QA+ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEVIEGDLDPVIGPLIRELQAEQLAEL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|319407578|emb|CBI81228.1| peptide chain release factor 1 [Bartonella sp. 1-1C] Length = 359 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 222/355 (62%), Positives = 288/355 (81%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+E+P+ + Y+KL EYA + PII+ I + ++E Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAETYVKLASEYAELQPIIAPIRTLNSLRKEIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D+E+R+LAQ E+ ++ ++I+ELE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELETIISDIQTDTEMRNLAQEELSSLSQKIQELEKELQILLLPKDIADEKSVIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF G+LFRMYERYA WKVE++S SD + GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRSEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++IN L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEGDLNELINALISDHQTTLLTEM 355 >gi|126462320|ref|YP_001043434.1| peptide chain release factor 1 [Rhodobacter sphaeroides ATCC 17029] gi|166223593|sp|A3PJZ6|RF1_RHOS1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|126103984|gb|ABN76662.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter sphaeroides ATCC 17029] Length = 351 Score = 294 bits (752), Expect = 1e-77, Method: Composition-based stats. Identities = 191/354 (53%), Positives = 252/354 (71%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E R+S + L+ EYA + P++++IS Y ++ + Sbjct: 1 MVPMDRLLQIVRRFEFLEARLSAGAAPAEIAALSREYAELKPVVAEISAYRTALEDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD E+R LA+ E+ A+ I +E + LLPKD D + ILEIR GTGG Sbjct: 61 EAML----SDPEMRALAEDEIPALRARIPGMEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ E+L + ++ GG +E A + G G F+R+K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIREATARVEGEGAFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D++IP DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAADIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLRARLYD+ER+R+A+ RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHRNREIAMQVLRARLYDLERQRLADARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + ++I+ L QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLSEVISALTAHDQAARLAEME 350 >gi|304570793|ref|YP_002516272.2| peptide chain release factor 1 [Caulobacter crescentus NA1000] gi|22096040|sp|Q9A9V5|RF1_CAUCR RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 356 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 195/355 (54%), Positives = 265/355 (74%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF E+E RM + +KL++E+A + P+ + + E +L Sbjct: 3 LPQARLDQVLDRFREVEARMGAATDGAEIVKLSKEHAELRPVAEAVERLAKLSAERAELD 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + SD E+ ++ + E+ A+++++ +E E+ +L PKD D++ S ILE+RAGTGG Sbjct: 63 VMA----SDPEMAEMVRDEIQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY+RYA + W+VE+ S S+ + GG+KEIVA+I+G GVF R+KFESGVH Sbjct: 119 EAALFAGDLFRMYQRYAQTQGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTSAATVAVLPEA +++++I D+RIDT R+SG+GGQHVN TDSA Sbjct: 179 RVQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSA 238 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++VTSSEKSQHQNR RAMK L+ARLYD++R+ + + RS RK Q+GSGDRS Sbjct: 239 VRITHLPTGVVVTSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRS 298 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY L +++G +DD+INPL+ QA+ + S E Sbjct: 299 ERIRTYNFPQGRVTDHRINLTLYNLARIMEGDALDDVINPLIAEDQAERLASLEE 353 >gi|29655248|ref|NP_820940.1| peptide chain release factor 1 [Coxiella burnetii RSA 493] gi|154706179|ref|YP_001425370.1| peptide chain release factor 1 [Coxiella burnetii Dugway 5J108-111] gi|161830069|ref|YP_001596008.1| peptide chain release factor 1 [Coxiella burnetii RSA 331] gi|165924041|ref|ZP_02219873.1| peptide chain release factor 1 [Coxiella burnetii RSA 334] gi|212219474|ref|YP_002306261.1| peptide chain release factor 1 [Coxiella burnetii CbuK_Q154] gi|30581025|sp|P47849|RF1_COXBU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039967|sp|A9KGY3|RF1_COXBN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039968|sp|A9N9K2|RF1_COXBR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238058710|sp|B6J625|RF1_COXB1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|29542520|gb|AAO91454.1| bacterial peptide chain release factor 1 (RF-1) [Coxiella burnetii RSA 493] gi|154355465|gb|ABS76927.1| bacterial peptide chain release factor 1 (RF-1) [Coxiella burnetii Dugway 5J108-111] gi|161761936|gb|ABX77578.1| peptide chain release factor 1 [Coxiella burnetii RSA 331] gi|165916526|gb|EDR35130.1| peptide chain release factor 1 [Coxiella burnetii RSA 334] gi|212013736|gb|ACJ21116.1| bacterial Peptide Chain Release Factor 1 (RF-1) [Coxiella burnetii CbuK_Q154] Length = 361 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 172/361 (47%), Positives = 252/361 (69%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R++EI +S+S ++ Y +L +EYA + PI+ + Q ++ Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R LA+ E+ + + ELE+++ LL+PKD +D+++ LEIR Sbjct: 61 AIESAEEMQQEK--DPELRKLAEEELEQLTLKKEELEDQLKLLLVPKDPNDERNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG+EAA+F GDLFRMY RYA + W+V ++S+ + + GG+KE++A + G GV+S++K Sbjct: 119 AGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE EID ++RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+N+ RAM +L+++L ER + E++A RK Sbjct: 239 VNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I PL+ QA+ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEVIEGDLDPVIGPLIRELQAEQLAEL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|237799727|ref|ZP_04588188.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae str. 1_6] gi|331022582|gb|EGI02639.1| peptide chain release factor 1 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYKQLIKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++RD+A EV ++++ +LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMRDMAVEEVRETKQQLVDLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|303239757|ref|ZP_07326281.1| peptide chain release factor 1 [Acetivibrio cellulolyticus CD2] gi|302592694|gb|EFL62418.1| peptide chain release factor 1 [Acetivibrio cellulolyticus CD2] Length = 360 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 253/354 (71%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +NR+ E+ ++S+ + D Y KL +E+A + ++ K Y + QE D Sbjct: 3 DRLQAAENRYEEMNHKLSDPAVIENQDEYRKLMKEHAELQELVGKYGEYKKVTQEIADAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D + R++ ++E+ E+ + +++ E+ LLLPKD +D+K I+EIR G GG Sbjct: 63 ELLNDK-LDKDFREMVEMELKEAEEGLEKIKKELKILLLPKDPNDEKDVIVEIRGGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFRMY RYA WK E+L S+ + GG+KE+V I G G FS++KFESGVH Sbjct: 122 EAALFAGVLFRMYTRYAERCGWKTEMLDSNPTEIGGFKEVVFAIEGNGAFSKLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TEA+GR+HTS TVAVLPE E+DVDI D+RIDT RASG+GGQH+N TDSA Sbjct: 182 RVQRIPETEANGRIHTSTVTVAVLPEVEEVDVDINPNDLRIDTYRASGAGGQHINKTDSA 241 Query: 244 VRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTG++V ++SQ++N+ +AM+VLR++LY++ +++ +E + RK Q+G+GDR Sbjct: 242 IRITHIPTGLVVCCQDQRSQYKNKDKAMRVLRSKLYEIAQEQQNSEIAQARKGQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ QGR+TDHRI LTLYKLE +L+G +D++I+ L+T QA+ +GS Sbjct: 302 SERIRTYNYPQGRMTDHRIGLTLYKLESILEGDMDEVIDALITTDQAERLGSGG 355 >gi|269798159|ref|YP_003312059.1| peptide chain release factor 1 [Veillonella parvula DSM 2008] gi|269094788|gb|ACZ24779.1| peptide chain release factor 1 [Veillonella parvula DSM 2008] Length = 360 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 172/357 (48%), Positives = 252/357 (70%), Gaps = 4/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++++F ++E R+S+ + D + KLT ++A +S + Y + Sbjct: 1 MLVDKLQVIEDKFMDLEQRISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVLSGID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + VI D + D E R++AQ E+ ++ + ELE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 EAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQVLLLPKDPNDDKNIIIEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY +YA + W+ E++ +++ + GG+KE++ ++ G V+S+MKFES Sbjct: 121 GGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS TVAVLPE ++D+++ +D++IDT RASG+GGQH+N T Sbjct: 181 GVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+P+GI+V ++SQ QNR +AM+VLRA+L D + + +A+RK Q+G+ Sbjct: 241 ESAVRITHLPSGIVVACQDQRSQLQNREKAMRVLRAKLQDQAEQEAISSMAADRKSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ +L G +D+II L A QA + A+ Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLYKLDAILNGDLDEIIQALNAADQAAKMQEAN 357 >gi|254787712|ref|YP_003075141.1| peptide chain release factor 1 [Teredinibacter turnerae T7901] gi|259585256|sp|C5BSZ6|RF1_TERTT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|237684441|gb|ACR11705.1| peptide chain release factor 1 [Teredinibacter turnerae T7901] Length = 360 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 169/361 (46%), Positives = 250/361 (69%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M +++ +L R+ E+ + + + K L +EY+ + P++ Y + Sbjct: 1 MKDSIKQKLENLVERYDEVGALLGDPDIIADQKKFRDLGKEYSELEPVVICYQEYRTVIE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D+++R++AQ E+ E ++ LE ++ LLLPKD +D+K+ LEIR Sbjct: 61 NIAEAKMLMND--GDADMREMAQEELKTAEAQLEPLETQLQKLLLPKDPNDEKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA W++E++S + + GGYKE++ + G+GV+S++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERAGWRIEIISENAGEHGGYKELITRVVGQGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PEA E + ++ D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAIMPEADESEEVELNKGDLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V E+SQH+NR +AM +L AR+ + ++ A E+++ RK Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDERSQHKNRAKAMSLLAARINSAQAEQFAAEQASERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G +D++I PL+ HQA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEIMEGSLDEVIQPLVNEHQADQLAAL 358 Query: 356 S 356 + Sbjct: 359 A 359 >gi|238022362|ref|ZP_04602788.1| hypothetical protein GCWU000324_02269 [Kingella oralis ATCC 51147] gi|237866976|gb|EEP68018.1| hypothetical protein GCWU000324_02269 [Kingella oralis ATCC 51147] Length = 358 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ + ++D+Y +L +E+A ++PI+ Y Q + Sbjct: 1 MKPSIQSKLQNLSHRLEEVTALLGSPEATANMDSYRRLNQEHAELTPIVDTYHAYTQAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++D A E+ A + I L+ E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLADAQEML----SDPEMKDFAFEEIQAAKDTIERLDLELQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+ E++S+S++D GGYKE++ + G G +S++K Sbjct: 117 AGTGGDEAALFAGDLLRMYTRYAERNRWQTEIVSASESDLGGYKEVIVRLVGLGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E +++ +D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELAKIELNDKDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +A+KVL ARL D++++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDGRSQHTNKEKALKVLAARLNDIQKREAHAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +D+I + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMDEITSALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|91776824|ref|YP_546580.1| peptide chain release factor 1 [Methylobacillus flagellatus KT] gi|119361559|sp|Q1GYE8|RF1_METFK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91710811|gb|ABE50739.1| bacterial peptide chain release factor 1 (bRF-1) [Methylobacillus flagellatus KT] Length = 360 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 250/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L R E+ +S +D Y K+T E+A I+PI+ + Y+Q + Sbjct: 1 MKPSMIKKLATLSERLDELNRLLSSEDVTNDIDNYRKITREHAEITPIVEQFRAYEQAEI 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D E+++ AQ E A ++++ ++E ++ LLLPKD +D+++ LEIR Sbjct: 61 DIKEAQAMLA----DPEMKEFAQEETEAGKQKLDDIEKQLQKLLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDLFRMY RYA + WKVE++S+++++ GGYKEI+A I G G +S++K Sbjct: 117 AGTGGDESALFAGDLFRMYSRYAERQGWKVEIVSANESEVGGYKEIIAKIEGFGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVLPE E DV I DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPETETQGRIHTSACTVAVLPEVDEVSDVTINPADIRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH PTGI+V +SQH N+ +AM+VL AR+ + ++ ++ R+ Sbjct: 237 INKTDSAVRITHFPTGIVVECQDGRSQHSNKAQAMQVLAARIKAKQVDEQQSKIASERRS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYK++ + +G +D++IN L HQA ++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKIDAITEGDMDELINALAAEHQADLLATL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|217969845|ref|YP_002355079.1| peptide chain release factor 1 [Thauera sp. MZ1T] gi|217507172|gb|ACK54183.1| peptide chain release factor 1 [Thauera sp. MZ1T] Length = 360 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L NR E++ ++ ++A+ +L+ E A I P+++ + + Sbjct: 1 MKQSIRDKLEHLANRLEELDRTLASEEGARDMNAFRELSRERAEIEPVVALYREHRLAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+R+L ++E+ E I LE E+ LLP+D +D ++ LEIR Sbjct: 61 DCATARELLA----DPEMRELGELELAEGEARIEALEAELQRALLPRDPNDARNLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA ++WKVE++S+S++D GGYKE++A + G G +S++K Sbjct: 117 AGTGGDEAALFAGDLLRMYTRYAERQRWKVEIVSASESDLGGYKEVIARVVGNGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVLPEA E++ DI D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPVTETQGRIHTSACTVAVLPEADEVEAVDINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+V ++SQH+N+ +AM VL ARLYD + + +A RK Sbjct: 237 INKTDSAVRITHIPTGIVVECQDDRSQHRNKAQAMAVLAARLYDARVRAQQSAEAAQRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D+I++ L HQA ++ + Sbjct: 297 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDAVMQGELDEIVDALTLEHQADLLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|225019405|ref|ZP_03708597.1| hypothetical protein CLOSTMETH_03358 [Clostridium methylpentosum DSM 5476] gi|224947822|gb|EEG29031.1| hypothetical protein CLOSTMETH_03358 [Clostridium methylpentosum DSM 5476] Length = 361 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 241/355 (67%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + RF EI ++ + V+ Y L E ++PII K Y K ++ Sbjct: 6 DKLSLTEKRFDEINEKLMDPNVVNDQHAYRDLMRELKHLTPIIDKYREYKAAKDNLEEAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E +++ Q + ++ I +L E+ LLLP D +DDK I+EIR G GG Sbjct: 66 EMLSEGGLDKEFKEMVQEQYSESQQAIEDLGEELKILLLPTDPNDDKDVIIEIRGGAGGE 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA + WK E+LS+++ + GG+KE+ +SG G +SR+KFESGVH Sbjct: 126 EAALFAYNLYRMYTMYAEAKGWKTEILSANETELGGFKEVSFEVSGEGAYSRLKFESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEASGR+HTS TVAVLPEA E++ DI DI++DT RASG+GGQHVN T+SA Sbjct: 186 RVQRVPETEASGRIHTSTVTVAVLPEAEEVEFDINPTDIQVDTFRASGAGGQHVNKTESA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+T++PTG++V E+SQH+N+ +AMK+LR RLY+ K ++ ++ RK Q+G+GDR Sbjct: 246 IRLTYLPTGLVVECQDERSQHKNKDKAMKILRTRLYEQAMKEATDKIASERKAQVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGRITDHRI LTLY LE + G ID+II+ L+TA QA + + SE Sbjct: 306 SERIRTYNYPQGRITDHRIGLTLYHLEQNMNGDIDEIIDALITADQAAKLAAESE 360 >gi|332800047|ref|YP_004461546.1| peptide chain release factor 1 [Tepidanaerobacter sp. Re1] gi|332697782|gb|AEE92239.1| Peptide chain release factor 1 [Tepidanaerobacter sp. Re1] Length = 356 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 176/356 (49%), Positives = 258/356 (72%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+ ++++ + + LT+E+A++ I++ Y + ++ ++ Sbjct: 1 MIEKLEIIEKKYDELTKKIADPEIIARQEEWIGLTKEHASLEEIVTNFREYKEVLKQLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D E+ L + E+ A+E++ +L+ ++ LLLP+D +DD++ I+EIRAGTG Sbjct: 61 NSELLEDAAGDIEMEQLIKSELEALEEKKSKLQEQLRILLLPQDPNDDRNVIMEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + WKVE++ S+ + GG+KE++ I+G+G +SR+K+ESG Sbjct: 121 GDEAALFAGDLFRMYSRYAEKQGWKVEIIDSNPTELGGFKEVIFEINGKGAYSRLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TEA GR+HTSAATVAVLPEA E+D++I +D+RID RASG GGQ VNTTD Sbjct: 181 VHRVQRVPSTEAGGRIHTSAATVAVLPEAHEVDIEINPDDLRIDIYRASGHGGQGVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V E+SQ +N+ +AMKVLRARL + ++ E + NR+ Q+GSG Sbjct: 241 SAVRITHIPTGLVVTCQDERSQLKNKDKAMKVLRARLLEKVQEEQEREIAQNRRSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRITDHRINLT ++L VLQG +D++I+ L+ QAK + A Sbjct: 301 DRSERIRTYNFPQGRITDHRINLTTHQLTNVLQGELDELIDALVAEDQAKKLAQAE 356 >gi|623028|emb|CAA55563.1| unnamed protein product [Coxiella burnetii] Length = 361 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 253/361 (70%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R++EI +S+S ++ Y +L +EYA + PI+ + Q ++ Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R LA+ E+ + + ELE+++N LL+PKD +D+++ LEIR Sbjct: 61 AIESAEEMQQEK--DPELRKLAEEELEQLTLKKEELEDQLNLLLVPKDPNDERNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG+EAA+F GDLFRMY RYA + W+V ++S+ + + GG+KE++A + G GV+S++K Sbjct: 119 AGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE EID ++RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+N+ RAM +L+++L ER + E++A RK Sbjct: 239 VNRTDSAIRITHLPTGVVVECQDERSQHKNKARAMSLLQSKLLAAERAKQDQEQAAKRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I PL+ QA+ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDEVIEGDLDPVIGPLIRELQAEQLAEL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|330961728|gb|EGH61988.1| peptide chain release factor 1 [Pseudomonas syringae pv. maculicola str. ES4326] Length = 360 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYKQLLKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ +LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKEQLVDLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|254731050|ref|ZP_05189628.1| peptide chain release factor 1 [Brucella abortus bv. 4 str. 292] Length = 351 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 215/349 (61%), Positives = 274/349 (78%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E DL + D Sbjct: 1 MDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEASDLAAMRDD 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGTGG EA LF Sbjct: 61 ASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGTGGLEATLF 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFESGVHRVQRV Sbjct: 121 AGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFESGVHRVQRV 180 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTTDSAVRITH Sbjct: 181 PETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTTDSAVRITH 240 Query: 249 IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 IPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSGDRSERIRT Sbjct: 241 IPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSGDRSERIRT 300 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 YNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 301 YNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALISDHQTALLAELGE 349 >gi|310816145|ref|YP_003964109.1| peptide chain release factor 1 [Ketogulonicigenium vulgare Y25] gi|308754880|gb|ADO42809.1| peptide chain release factor 1 [Ketogulonicigenium vulgare Y25] Length = 352 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 183/355 (51%), Positives = 248/355 (69%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ L +RF +E +M S L EY+ + P++ ++ Y + + Sbjct: 1 MIPAEKLAQLTDRFQFLEAKMQSGLSGAEIAALGREYSELKPVVDTLARYQALEADLASA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D ++R A+ E+ + E E E+ LLP+D D + +LEIR GTGG Sbjct: 61 EEWLA----DPDMRAFAEEELPRLRTAFAEAEIEMQKALLPRDAADGRPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF DL RMY+RY+ + W+ E++ ++ + GG KE+V I G GVF+RMK+ESGV Sbjct: 117 DEASLFAADLLRMYQRYSESKGWRFEIIEEAETELGGIKEVVVRIEGEGVFARMKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA +D++I DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAEAVDIEINPGDIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSS+KSQH+NR AM VLRARLYD+ER R+ RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSQKSQHRNRELAMDVLRARLYDMERSRVDGARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRIN+TLY+L+ +LQG +D+I++ L+ QA ++ +E Sbjct: 297 SERIRTYNFPQGRMTDHRINMTLYRLDQILQGDLDEIVDALVADAQATLLAEMAE 351 >gi|302872094|ref|YP_003840730.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis OB47] gi|302574953|gb|ADL42744.1| peptide chain release factor 1 [Caldicellulosiruptor obsidiansis OB47] Length = 355 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++++ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQPIVEKFREYKKILNTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGDLDEIIDALITHFQTEKLKEVG 355 >gi|294678208|ref|YP_003578823.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003] gi|294477028|gb|ADE86416.1| peptide chain release factor 1 [Rhodobacter capsulatus SB 1003] Length = 351 Score = 294 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 190/355 (53%), Positives = 250/355 (70%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +++ + L+ EY+ + P++++I+ Y Q + + Sbjct: 1 MVPLDKLAQITARFEFLEAKLNTALPPAEIATLSREYSDLRPVVTEIAAYRQSLDDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + SD E++ LA+ E+ ++ I +E + LLPKD D + ILEIR GTGG Sbjct: 61 EGWL----SDPEMKTLAEEELPRLKARIPAMEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL+RMYER+A W+ E L + + GG KE +A I G GVF+R+K+ESGV Sbjct: 117 EEAALFAHDLWRMYERHAEKMGWRFERLEFTATELGGVKEAMARIEGEGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D+DIP DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAGGRIHTSAATVAVLPEAEEVDIDIPAADIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQHQNR AM VLRARLY++ER+R+A ER+ NR+ Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHQNRANAMAVLRARLYEIERERLATERAENRRSQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLY L +L G + ++I+ L+ QA + E Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQILAGDLGEVIDALVAHDQAAKLAEMDE 351 >gi|238019080|ref|ZP_04599506.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748] gi|237864335|gb|EEP65625.1| hypothetical protein VEIDISOL_00942 [Veillonella dispar ATCC 17748] Length = 360 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 172/357 (48%), Positives = 252/357 (70%), Gaps = 4/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++++F ++E R+S+ + D + KLT ++A +S + Y + Sbjct: 1 MLVDKLQVIEDKFMDLEQRISDPEVIARQDEWRKLTRQHAQLSETVETFRTYKKVLAGID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + VI D + D E R++AQ E+ ++ + ELE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 EAMEVIEDKSMDEEFREMAQEELKELKPQKEELEEKLQILLLPKDPNDDKNIIIEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY +YA + W+ E++ +++ + GG+KE++ ++ G V+S+MKFES Sbjct: 121 GGDEAALFAGDLFRMYTKYAESQGWRCEIIDANEPELGGFKEVIFSVDGENVYSKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS TVAVLPE ++D+++ +D++IDT RASG+GGQH+N T Sbjct: 181 GVHRVQRVPATETQGRVHTSTVTVAVLPEMEDVDIEVNEKDLKIDTYRASGAGGQHINKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+P+GI+V ++SQ QNR +AM+VLRA+L D + + +A+RK Q+G+ Sbjct: 241 ESAVRITHLPSGIVVACQDQRSQLQNREKAMRVLRAKLQDQAEQEAISSMAADRKSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ +L G +D+II L A QA + A+ Sbjct: 301 GDRSERIRTYNYPQGRVTDHRINLTLYKLDAILNGDLDEIIQALNAADQAAKMQEAN 357 >gi|332285704|ref|YP_004417615.1| peptide chain release factor 1 [Pusillimonas sp. T7-7] gi|330429657|gb|AEC20991.1| peptide chain release factor 1 [Pusillimonas sp. T7-7] Length = 355 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 250/357 (70%), Gaps = 9/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R E++ ++E +D Y K++ E A + P+++ + + + + + Sbjct: 1 MRDRLEQLAHRLIEVDALLAEPEIAGDMDRYRKISRERAELDPVVAVFNSFLATEGDIKT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++R +A+ E++ ++++ +LE ++ LLLP+D DD +S LEIRAGTG Sbjct: 61 AQEMMA----DPDMRGMAEEELMLGKEKLEQLEADLQVLLLPRDPDDSRSVYLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDL RMY RYA W+VE++S+SD++ GGYKE++A + G GV+ R+KFESG Sbjct: 117 GDESALFAGDLLRMYTRYAENNSWRVELVSASDSEIGGYKEVIARVDGDGVYGRLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTT 240 HRVQRVPATE GR+HTSA TVAVLPEA E + D+RIDT RASG+GGQH+N T Sbjct: 177 AHRVQRVPATETQGRIHTSACTVAVLPEADEQSDIVINPADLRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+TH+PTG++V ++SQH+N+ +A++VL ARL D +++ ++ +A RK +G+ Sbjct: 237 DSAVRVTHLPTGLVVECQDDRSQHRNKDKALQVLAARLKDKQQQEQHDKEAAQRKSLVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL +++ G ++++ N LL HQA+ + + Sbjct: 297 GDRSERIRTYNYPQGRVTDHRINLTLYKLGHIMDGDLNELTNALLAEHQAEQLAALG 353 >gi|300313560|ref|YP_003777652.1| peptide chain release factor 1 [Herbaspirillum seropedicae SmR1] gi|300076345|gb|ADJ65744.1| peptide chain release factor 1 (RF-1) protein [Herbaspirillum seropedicae SmR1] Length = 359 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 257/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +++ S+D + K+T E+A + P+++ Y Q + Sbjct: 1 MKPSMLAKLDQLAERLEELNSLLAQEDATASMDNFRKMTREHAELGPLVALYHEYVQAAE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D +++ AQ E+ + + LE ++ +LLPKD +D+++ LEIR Sbjct: 61 DIRTAQELLA----DPDMKAFAQEEIDGAKARMEGLELDLQKMLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S+S+++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSASESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA E+ DV+I DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVGDVEINPADIRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+N+ +AMKVL AR+ DV+ ++ +E +A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMKVLAARIKDVQLRQQQSEEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL++++ G +D++ N L+T HQA+++ Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLDELTNALITEHQAELLAQL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|182420270|ref|ZP_02951499.1| peptide chain release factor 1 [Clostridium butyricum 5521] gi|237666557|ref|ZP_04526542.1| peptide chain release factor 1 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375865|gb|EDT73457.1| peptide chain release factor 1 [Clostridium butyricum 5521] gi|237657756|gb|EEP55311.1| peptide chain release factor 1 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 360 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 171/357 (47%), Positives = 253/357 (70%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E+A + I++ Y + ++ + Sbjct: 1 MLLDKLEFIENKYDELSVKISDPSIMQNQNEWRKLCKEHADLEIIVNAYKEYKKVTEDLE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + N D E+R++ E+ + K ELEN I LLLPKD +DDK+ +EIR G Sbjct: 61 ANKEMLSEEN-DKEMREMLSEEISDLTKREVELENHIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W VE++S ++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGEEAALFAYNLFRMYTRYAETQRWAVEIMSLNETDLGGFKEVVFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS +TVAVLPE +++++I +D+RID RASG+GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTSTVAVLPEVDDVEIEISEKDLRIDVFRASGNGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V EKSQ +N+ +AMKVL++RLY+ + A + +RK Q+G+ Sbjct: 240 DSAVRITHLPSGLVVSCQDEKSQLKNKEKAMKVLKSRLYEQAERERAEGIAEDRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRI LTLYKLE L G ID++IN L+TA QA+ + + Sbjct: 300 GDRSERIRTYNYPQGRVTDHRIGLTLYKLETFLNGDIDEMINALITADQAEKMKAMG 356 >gi|257464821|ref|ZP_05629192.1| peptide chain release factor 1 [Actinobacillus minor 202] gi|257450481|gb|EEV24524.1| peptide chain release factor 1 [Actinobacillus minor 202] Length = 360 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ + ++EYA + ++S + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDATIINDQDKFRAYSKEYAQLEEVVSTFNRWKKLHS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ A + EI +LE + LLLPKD +D+ +C LEIR Sbjct: 61 DIEEAQILL----DDPDMKDMAAEEIEANKAEIEQLEQNLQILLLPKDPNDEYNCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RYA ++W++E LS+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE+++ A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEKEKQAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|325527071|gb|EGD04495.1| peptide chain release factor 1 [Burkholderia sp. TJI49] Length = 360 Score = 293 bits (750), Expect = 2e-77, Method: Composition-based stats. Identities = 182/362 (50%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++G D +RD A+ E+ + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DETAAQELLG----DPSMRDFAEDEIRSARERMVRLEVELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|104780100|ref|YP_606598.1| peptide chain release factor 1 [Pseudomonas entomophila L48] gi|166223588|sp|Q1IEX1|RF1_PSEE4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|95109087|emb|CAK13784.1| peptide chain release factor 1 [Pseudomonas entomophila L48] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+I+ + + + Sbjct: 1 MKASLLNKLDTLQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVIACYVGWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D ++R++A EV ++++ LE+++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKDA--DPDLREMAVEEVREAKEQLVGLESQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQVAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|213967224|ref|ZP_03395373.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato T1] gi|301381040|ref|ZP_07229458.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato Max13] gi|302060378|ref|ZP_07251919.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato K40] gi|302134868|ref|ZP_07260858.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213928066|gb|EEB61612.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato T1] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYKQLARVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|254447802|ref|ZP_05061267.1| peptide chain release factor 1 [gamma proteobacterium HTCC5015] gi|198262582|gb|EDY86862.1| peptide chain release factor 1 [gamma proteobacterium HTCC5015] Length = 358 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ +L R E+ + +S+ ++ + L++EYA + P+ S Y + Sbjct: 1 MKDSIRQKLENLVARHEEVGMLLSDPDVINDQNRFRDLSKEYAELEPVTKTFSEYQTQSD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D +++++AQ E+ + EI LE E+ LLLP D D+ + +EIR Sbjct: 61 NLSTAEEML----DDPDMKEMAQEEIDSARVEIERLEQELQILLLPSDPHDNSNIYVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL RMY RYA + W+VE+ + S+ + GGYKE++A I G+G FS+MK Sbjct: 117 AGTGGDEAAIFAGDLLRMYTRYAENQGWRVELQAESEGEHGGYKEVIARIIGQGAFSKMK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSAATVA++PE E++ DI D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPETESQGRIHTSAATVAIMPEIDEVEAPDINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V + +E+SQH+NR RAM L++++ ER + A E++A RK Sbjct: 237 VNKTDSAIRITHVPTGIVVESQAERSQHKNRARAMSQLQSKIIQGERDKQAQEQAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G ++ +I+PL++ +QA + + Sbjct: 297 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDDVMGGGLEQVIDPLVSEYQADQLAAL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|295697770|ref|YP_003591008.1| peptide chain release factor 1 [Bacillus tusciae DSM 2912] gi|295413372|gb|ADG07864.1| peptide chain release factor 1 [Bacillus tusciae DSM 2912] Length = 355 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 163/351 (46%), Positives = 234/351 (66%), Gaps = 5/351 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ R+ + + KL ++E A + + Y Q ++ Sbjct: 3 DKLQAIEERYEDLGRRLCDPDVLADPEKLRTYSKEQADLEETVQTYREYKQVVSALREAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E+R+ + E+ A+ ELE ++ LLLP+D +DDK+ I+EIR GG Sbjct: 63 EMF-EERLDEEMREWVKSEIAALGHRREELEAKLQILLLPRDPNDDKNVIVEIRGAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLFRMY RYA + W+VE++ S D GG+KE+V ++ GRG +SR+KFESG H Sbjct: 122 EASLFAADLFRMYTRYAERQGWRVEMIDSHPTDLGGFKEVVFSVQGRGAYSRLKFESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PE E++V+I +D+RIDT ++G GGQ VNTT SA Sbjct: 182 RVQRVPTTESGGRIHTSTATVAVMPEVEEVEVEIHEKDLRIDTFCSTGPGGQSVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V EKSQ +NR +AM+VLRARLY+ R+ E + RK +G+GDR Sbjct: 242 VRITHLPTGIVVSCQDEKSQLKNREKAMRVLRARLYEKYRREQQEELAQTRKSLVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 SERIRTYNF Q R+TDHRI LTL++L+ VL G +D+II+ L+ A + + + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTLHRLDAVLDGDLDEIIHALIAADRVEKLS 352 >gi|161526057|ref|YP_001581069.1| peptide chain release factor 1 [Burkholderia multivorans ATCC 17616] gi|189349228|ref|YP_001944856.1| peptide chain release factor 1 [Burkholderia multivorans ATCC 17616] gi|238687082|sp|A9AJ68|RF1_BURM1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160343486|gb|ABX16572.1| peptide chain release factor 1 [Burkholderia multivorans ATCC 17616] gi|189333250|dbj|BAG42320.1| peptide chain release factor RF-1 [Burkholderia multivorans ATCC 17616] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D +RD A+ E+ + + + LE E+ +LLPKD +DD++ +EIR Sbjct: 61 DETAAQELLA----DPSMRDFAEEEIRSARERMARLEVELQKMLLPKDPNDDRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I L D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINLADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|66044202|ref|YP_234043.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae B728a] gi|75503325|sp|Q4ZXW7|RF1_PSEU2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|63254909|gb|AAY36005.1| Peptide chain release factor 1 [Pseudomonas syringae pv. syringae B728a] gi|330972814|gb|EGH72880.1| peptide chain release factor 1 [Pseudomonas syringae pv. aceris str. M302273PT] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|167587636|ref|ZP_02380024.1| peptide chain release factor 1 [Burkholderia ubonensis Bu] Length = 360 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELDPVVGQYALWRQSLS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++G D+ +RD A+ E+ + + +LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DEAAAQELLG----DASMRDFAEDEIRSARDRMVQLEVELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+ + S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIAALVSEHQAEQLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|149204050|ref|ZP_01881018.1| peptide chain release factor 1 [Roseovarius sp. TM1035] gi|149142492|gb|EDM30537.1| peptide chain release factor 1 [Roseovarius sp. TM1035] Length = 417 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 190/354 (53%), Positives = 247/354 (69%), Gaps = 6/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +M + +L EY+ + P++ +I Y + Sbjct: 70 MIPLDRLQQIVERFDYVEAQMMQGGG--DIARLGREYSELRPVVEEIRAYRLAVNDLDGA 127 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+RDLA+ EV +E + E+E + LLP+D D + ILEIR GTGG Sbjct: 128 RAMLA----DPEMRDLAREEVAVLEARLPEMEQRLQLALLPRDEADARPAILEIRPGTGG 183 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RY+ R W EV+ ++ GG +E+V I G GVF+R+KFESGV Sbjct: 184 EEAALFGADLMRMYQRYSEARGWSFEVIEEQQSELGGIRELVVRIGGEGVFARLKFESGV 243 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 244 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQINANDLRIDTMRSSGAGGQHVNTTDS 303 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VL+ RLYD+ER R+ +ERSANR Q+GSGDR Sbjct: 304 AVRITHLPTGIVVTSSEKSQHRNREIAMQVLKTRLYDLERNRVDSERSANRAAQVGSGDR 363 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKLE VL G +D++I+ L QA ++ S Sbjct: 364 SERIRTYNFPQGRMTDHRINLTLYKLEQVLGGDLDEVIDALTADAQASLLAEMS 417 >gi|330975577|gb|EGH75643.1| peptide chain release factor 1 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVTLYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV +++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETRQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|326389251|ref|ZP_08210819.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW 200] gi|325994614|gb|EGD53038.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus JW 200] Length = 356 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 254/356 (71%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ + + + K +E+AAI I+ K Y + ++ + Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ ++D E++++A+ E+ +E++ +L EI LL+PKD +D+K+ I+EIRAG G Sbjct: 61 TKELLS--SNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DI++D R+ G GGQ VNTTD Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + + + Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKLKNMN 354 >gi|71736680|ref|YP_273268.1| peptide chain release factor 1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|257482007|ref|ZP_05636048.1| peptide chain release factor 1 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289627918|ref|ZP_06460872.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647287|ref|ZP_06478630.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi str. 2250] gi|298485681|ref|ZP_07003760.1| Peptide chain release factor 1 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|119361578|sp|Q48MV4|RF1_PSE14 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71557233|gb|AAZ36444.1| peptide chain release factor 1 [Pseudomonas syringae pv. phaseolicola 1448A] gi|298159707|gb|EFI00749.1| Peptide chain release factor 1 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320325690|gb|EFW81751.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea str. B076] gi|320327391|gb|EFW83405.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea str. race 4] gi|330868898|gb|EGH03607.1| peptide chain release factor 1 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330881882|gb|EGH16031.1| peptide chain release factor 1 [Pseudomonas syringae pv. glycinea str. race 4] gi|330887864|gb|EGH20525.1| peptide chain release factor 1 [Pseudomonas syringae pv. mori str. 301020] gi|330988605|gb|EGH86708.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans str. M301315] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYQQLIRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|330899755|gb|EGH31174.1| peptide chain release factor 1 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330941684|gb|EGH44459.1| peptide chain release factor 1 [Pseudomonas syringae pv. pisi str. 1704B] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVTLYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|312795903|ref|YP_004028825.1| peptide Chain Release Factor 1 (RF-1) [Burkholderia rhizoxinica HKI 454] gi|312167678|emb|CBW74681.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Burkholderia rhizoxinica HKI 454] Length = 365 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +S +D Y KLT E+A ++P++ + + + + Sbjct: 6 MKPSMQAKLEQLTKRLPELNELLSREDVTSDLDQYRKLTREHAELAPVVEQYAQWKTARN 65 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ +D +RD A+ E+ + +LE ++ +LLPKD +D+++ +EIR Sbjct: 66 DEATAQELL----TDPSMRDFAEDELNTARSRMEQLERDLQKMLLPKDPNDERNIFVEIR 121 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S S +D GGYKE++ I G+G +SR+K Sbjct: 122 AGTGGDESALFAGDLLRMYLRYAERHRWQVEMMSESASDLGGYKEVIVRIIGQGAYSRLK 181 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI ++++ D+RIDT RASG+GGQH Sbjct: 182 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIAEIELNPADLRIDTFRASGAGGQH 241 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+N+ RAMKVL AR+ D + + + +A RK Sbjct: 242 INKTDSAVRITHLPTGIVVECQDDRSQHKNKDRAMKVLAARIKDKQYQEQHAKEAATRKS 301 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRIN+TLYKLE ++ G +D +I+ L++ HQA+++ + Sbjct: 302 LVGSGDRSERIRTYNFPQGRLTDHRINVTLYKLEQMMDGDLDALIDALVSEHQAELLAAM 361 Query: 356 SE 357 E Sbjct: 362 GE 363 >gi|330502033|ref|YP_004378902.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01] gi|328916319|gb|AEB57150.1| peptide chain release factor 1 [Pseudomonas mendocina NK-01] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +RF E+ + ++ + + ++EYA I P+I+ + + Sbjct: 1 MKASLLNKLDNLSDRFEELTALLGDAEVISKQSQFRAYSKEYAEIEPVIATFRELRKVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A++EV ++ + LE+++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDLREMAELEVDQAKEALVGLEDKLQRMLLPKDPNDGRNVYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VEVLS+++ + GG+KE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKQGWRVEVLSANEGEHGGFKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG +V E+SQH+NR +AM L A+L D + E S RKL Sbjct: 239 VNTTDSAIRITHIPTGTVVECQEERSQHKNRAKAMAWLAAKLQDQQDAAAHKEISETRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V+ G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLNEVIAGGVEAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|261493250|ref|ZP_05989777.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496507|ref|ZP_05992887.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307710|gb|EEY09033.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311100|gb|EEY12276.1| peptide chain release factor RF1 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ + D + ++EY+ + ++ + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDASIISDQDKFRAYSKEYSQLEEVVGTFNRWKKLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAQLLL----DDPDMKDMAAEEIAENKAEIENLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RY ++W++E +S+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYCESKRWRIEEMSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAAEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|328473485|gb|EGF44333.1| peptide chain release factor 1 [Vibrio parahaemolyticus 10329] Length = 362 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLAAAEEMAKE--DDEEMREMAQEEIKDAKEAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E++R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|221639323|ref|YP_002525585.1| peptide chain release factor 1 [Rhodobacter sphaeroides KD131] gi|254790895|sp|B9KST8|RF1_RHOSK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|221160104|gb|ACM01084.1| Peptide chain release factor 1 [Rhodobacter sphaeroides KD131] Length = 351 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 190/354 (53%), Positives = 251/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E R+S + L+ EYA + P++ +IS Y ++ + Sbjct: 1 MVPMDRLLQIVRRFEFLEARLSAGAAPAEIAALSREYAELKPVVVEISAYRTALEDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD E+R LA+ E+ A+ I +E + LLPKD D + ILEIR GTGG Sbjct: 61 EAML----SDPEMRALAEDEIPALRARIPGMEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ E+L + ++ GG +E A + G G F+R+K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIREATARVEGEGAFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D++IP D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAADLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLRARLYD+ER+R+A+ RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHRNREIAMQVLRARLYDLERQRLADARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + ++I+ L QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLSEVISALTAHDQAARLAEME 350 >gi|319404588|emb|CBI78194.1| peptide chain release factor 1 [Bartonella rochalimae ATCC BAA-1498] Length = 359 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 222/355 (62%), Positives = 287/355 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+E+P+ + Y+KL EYA + PII+ I + +E Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAETYVKLASEYAELQPIIAPIRTLNSLHKEIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D+E+R+LAQ E+ ++ ++I+ELE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 ELETIISDTQTDTEMRNLAQEELSSLSQKIQELEQELQILLLPKDIADEKSVIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF G+LFRMYERYA WKVE++S SD + GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFAGNLFRMYERYANTHNWKVEIISLSDGEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++IN L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEGDLNELINALISDHQTTLLTEM 355 >gi|300853434|ref|YP_003778418.1| peptide chain release factor 1 [Clostridium ljungdahlii DSM 13528] gi|300433549|gb|ADK13316.1| peptide chain release factor 1 (RF-1) [Clostridium ljungdahlii DSM 13528] Length = 357 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 248/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ +++S+ + + KL +E A + I++K Y + +QE +D Sbjct: 1 MLERLNFIENKYEELSIKISDPQVMADQKEWQKLCKENAELEEIVTKYREYKKAQQELED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D E++++ Q E+ + + I E EN++ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKEMLKEE-TDREMKEMEQEEIKRLTEVIEESENDLRVLLLPKDPNDDKNVFVEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + W +E +S + D GG+KEIV + G+G +SR+K+ESG Sbjct: 120 GEEAALFAANLTRMYTRYAERQAWNIETMSINATDIGGFKEIVFMVKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+SGR+HTS ATVAVLPE ++DV I DIRID RASG GGQ VNTTD Sbjct: 180 THRVQRVPDTESSGRIHTSTATVAVLPEVDDVDVVINPNDIRIDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ + MKVL++RLY+ K + + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQLKNKEKGMKVLKSRLYERAEKERSASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI LTLYKL+ L G ID+II+ L+TA QA+ + Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGLTLYKLDSFLDGNIDEIIDALITADQAEKMKEMG 355 >gi|17547620|ref|NP_521022.1| peptide chain release factor 1 [Ralstonia solanacearum GMI1000] gi|20139328|sp|Q8XVD0|RF1_RALSO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|17429924|emb|CAD16608.1| probable peptide chain release factor 1 (rf-1) protein [Ralstonia solanacearum GMI1000] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI ++ ++D Y KLT E+A + P++++ + + Q + Sbjct: 1 MKPSMLSKLDQLAERTVEINALLAREDATANLDQYRKLTREHAELEPVVAQYAAWKQAED 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D +++ A+ E+ A + + LE E+ LLLPKD +D ++ LEIR Sbjct: 61 DVTTAQELLA----DPDMKAFAEDEIRAARERMTTLEAELQRLLLPKDPNDHRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ + G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIVRLVGEGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEADPLADIQINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK Sbjct: 237 INKTDSAVRLTHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGRITDHRINLTLYK++ ++ G + +++ L HQA+ + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRITDHRINLTLYKIDALMDGDLGELLGALAAEHQAEQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|224827212|ref|ZP_03700307.1| peptide chain release factor 1 [Lutiella nitroferrum 2002] gi|224600605|gb|EEG06793.1| peptide chain release factor 1 [Lutiella nitroferrum 2002] Length = 358 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++ +DA+ KLT E+A ++P++ Y Q + Sbjct: 1 MKPSIATKLSQLADRLEEVTHLLASEAATRDMDAFRKLTREHAELTPVVETYQAYRQCES 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++++ AQ E+ ++ + L+ E+ LLLPKD +D+K+ LEIR Sbjct: 61 DLATATEMLA----DPDMKEFAQAEIDEGKERMASLDVELQKLLLPKDPNDEKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY R+A +W+ E++SSS++D GGYKE++ + G G FSR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYTRFAERNRWQAEIVSSSESDLGGYKEVIVRLVGFGAFSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEAEEIAEVVLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+ +SQH N+ AM+VL AR+YD++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGIVAECQDGRSQHANKASAMQVLAARIYDIQLRAQQQSVAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYKL+ V+ G + ++ + L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKLDQVMDGDLFELTDALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|77463465|ref|YP_352969.1| peptide chain release factor 1 [Rhodobacter sphaeroides 2.4.1] gi|119361594|sp|Q3J2B6|RF1_RHOS4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|77387883|gb|ABA79068.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodobacter sphaeroides 2.4.1] Length = 351 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 191/354 (53%), Positives = 251/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E R+S + L+ EYA + P++ +IS Y ++ + Sbjct: 1 MVPMDRLLQIVRRFEFLEARLSAGAAPAEIAALSREYAELKPVVVEISAYRTALEDLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD E+R LA+ E+ A+ I +E + LLPKD D + ILEIR GTGG Sbjct: 61 EAML----SDPEMRALAEDEIPALRARIPGMEQALRLALLPKDAADARPAILEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + W+ E+L + ++ GG +E A + G G F+R+K+ESGV Sbjct: 117 EEAALFAGDLLRMYQRYAEGQGWRFELLDLAPSELGGIREATARVEGEGAFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTSAATVAVLPEA E+D++IP DIRIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPETEAQGRIHTSAATVAVLPEAEEVDLEIPAADIRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VLRARLYD+ER+R+A+ RSA+RK Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHRNREIAMQVLRARLYDLERQRLADARSADRKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY L ++ G + ++I+ L QA + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYALPQIMAGDLSEVISALTAHDQAARLAEME 350 >gi|52425247|ref|YP_088384.1| peptide chain release factor 1 [Mannheimia succiniciproducens MBEL55E] gi|61214602|sp|Q65TB1|RF1_MANSM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52307299|gb|AAU37799.1| PrfA protein [Mannheimia succiniciproducens MBEL55E] Length = 360 Score = 293 bits (749), Expect = 3e-77, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E+E + ++ + D + ++EY+ + ++ S + Q Sbjct: 1 MKPSIISKLDSLNERYEELEALLGDASVISDQDKFRAYSKEYSQLEEVVKTFSRWKQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + E+ E+E + LLLP+D +D+ + LEIR Sbjct: 61 NIEEAELLL----DDPEMKEMAQMEIEESKNELEEVEQHLQILLLPRDPNDEYNAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA +++W+VEVLS ++++ GGYKEI+A +SG V+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAEMKRWRVEVLSENESEQGGYKEIIALVSGDNVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG++V E+SQH+N+ +A+ VL +RL E+ ++A E++ R+ Sbjct: 237 INKTDSAVRITHIPTGMVVECQDERSQHKNKAKALAVLASRLVQAEQDKLAAEQATTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|269961569|ref|ZP_06175931.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3] gi|269833610|gb|EEZ87707.1| Peptide chain release factor 1 [Vibrio harveyi 1DA3] Length = 362 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTNCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLIAAEDMANE--DDEEMREMAQEEIKEAKDAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E++R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|312877228|ref|ZP_07737197.1| peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus 6A] gi|311796037|gb|EFR12397.1| peptide chain release factor 1 [Caldicellulosiruptor lactoaceticus 6A] Length = 355 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++++ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQPIVEKFREYKRILNTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDLDEDFEKLVKEELNHAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGELDEIIDALITHFQTERLKEVG 355 >gi|302186444|ref|ZP_07263117.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae 642] Length = 360 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGESVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|302671177|ref|YP_003831137.1| peptide chain release factor 1 PrfA [Butyrivibrio proteoclasticus B316] gi|302395650|gb|ADL34555.1| peptide chain release factor 1 PrfA [Butyrivibrio proteoclasticus B316] Length = 357 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 246/354 (69%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I D+ +F +I + +++ + + KL +E + P++ + Y + K+ + Sbjct: 3 DKIEDILRKFEDITMELNDPSVIADQERFRKLMKEQKNLEPLVECYNEYKKCKETIDESL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E++++ + E+ + +I ELE+++ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AML-DEESDPEMKEMLKDELQTAKDKIPELEDKLKILLLPKDPNDDKNVIVEIRAGVGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D++R+Y RYA + W+VE +S D GG K + I G G +SR+KFESGVH Sbjct: 122 EAALFAADMYRVYTRYAERQNWRVETMSVEDIGIGGIKTVSFMIKGNGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTSA TVA++PE +++V+I + D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSAITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ EKSQ QN+ +A++VLRA+LY++E+++ N + R+ Q+GSGDR Sbjct: 242 VRLTHFPTGIVISCQDEKSQQQNKAKALRVLRAKLYELEQEKKHNNEAELRRSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G ID+II+ L+ A QA+ + Sbjct: 302 SEKIRTYNFHQGRVTDHRIGLTLYKIDQIMDGDIDEIIDSLIAADQAEKLSKVE 355 >gi|146296536|ref|YP_001180307.1| peptide chain release factor 1 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|166223538|sp|A4XJN1|RF1_CALS8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145410112|gb|ABP67116.1| bacterial peptide chain release factor 1 (bRF-1) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 355 Score = 293 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 175/356 (49%), Positives = 250/356 (70%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++S+ ++ + KL +E++ + PI+ K Y + + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIINNNQEWQKLMKEHSNLQPIVEKFREYKRIIKTIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D N D + L + E+ +++ +E E+ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTNLDEDFEKLVKEELNQAKEQKEIVERELKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ I+T RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIETFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRITHKPTGIVVSCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGDLDEIIDALITHFQTERLKEVG 355 >gi|126701107|ref|YP_001090004.1| peptide chain release factor 1 [Clostridium difficile 630] gi|254977108|ref|ZP_05273580.1| peptide chain release factor 1 [Clostridium difficile QCD-66c26] gi|255094436|ref|ZP_05323914.1| peptide chain release factor 1 [Clostridium difficile CIP 107932] gi|255102693|ref|ZP_05331670.1| peptide chain release factor 1 [Clostridium difficile QCD-63q42] gi|255308514|ref|ZP_05352685.1| peptide chain release factor 1 [Clostridium difficile ATCC 43255] gi|255316188|ref|ZP_05357771.1| peptide chain release factor 1 [Clostridium difficile QCD-76w55] gi|255518849|ref|ZP_05386525.1| peptide chain release factor 1 [Clostridium difficile QCD-97b34] gi|255652028|ref|ZP_05398930.1| peptide chain release factor 1 [Clostridium difficile QCD-37x79] gi|255657438|ref|ZP_05402847.1| peptide chain release factor 1 [Clostridium difficile QCD-23m63] gi|260685003|ref|YP_003216288.1| peptide chain release factor 1 [Clostridium difficile CD196] gi|260688661|ref|YP_003219795.1| peptide chain release factor 1 [Clostridium difficile R20291] gi|296449035|ref|ZP_06890825.1| peptide chain release factor RF1 [Clostridium difficile NAP08] gi|296879858|ref|ZP_06903831.1| peptide chain release factor RF1 [Clostridium difficile NAP07] gi|306521770|ref|ZP_07408117.1| peptide chain release factor 1 [Clostridium difficile QCD-32g58] gi|119361524|sp|Q180Y2|RF1_CLOD6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|115252544|emb|CAJ70387.1| Peptide chain release factor 1 (RF-1) [Clostridium difficile] gi|260211166|emb|CBA66621.1| peptide chain release factor 1 [Clostridium difficile CD196] gi|260214678|emb|CBE07314.1| peptide chain release factor 1 [Clostridium difficile R20291] gi|296262128|gb|EFH08933.1| peptide chain release factor RF1 [Clostridium difficile NAP08] gi|296429147|gb|EFH15021.1| peptide chain release factor RF1 [Clostridium difficile NAP07] Length = 354 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 251/354 (70%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ L++ + ++ ++ + ++ + K +E+A + PI+ K Y ++ Sbjct: 1 MLKKLEVLEDTYKDLSEKIGDPDVINDQKVWQKYIKEHADLEPIVMKYREYKSVLDSIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R+LA++E+ +E+++ LE EI LLLPKD +DDK+ I+EIR G G Sbjct: 61 SKEILQEE-SDEELRELAKMELAEMEEKVAPLEEEIKILLLPKDPNDDKNVIVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA R+WK+E+LS+SD GGYKE+ I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLFRMYSRYAERRRWKIELLSASDTGVGGYKEVSFMIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE+ GR+HTS +TVAVLPE +++V+I D+RID R+SG+GGQ VNTTD Sbjct: 180 VHRVQRIPSTESGGRIHTSTSTVAVLPEVEDVEVEINPNDLRIDVFRSSGNGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG +V KSQ +N+ +A+K+L+ARLYD + +A RK Q+G+G Sbjct: 240 SAVRVTHIPTGEVVSCQDGKSQLKNKEQALKILKARLYDKALAEQHKDIAAERKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGRI+DHRINLTLYKL+ L G ID++I+ L+T Q + + + Sbjct: 300 DRSERIRTYNFPQGRISDHRINLTLYKLDAFLDGDIDEMIDALITVDQTEKMTA 353 >gi|28897517|ref|NP_797122.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD 2210633] gi|153840439|ref|ZP_01993106.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810] gi|260364112|ref|ZP_05776832.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030] gi|260897557|ref|ZP_05906053.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466] gi|260903527|ref|ZP_05911922.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037] gi|31076863|sp|Q87RN4|RF1_VIBPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|28805729|dbj|BAC59006.1| peptide chain release factor 1 [Vibrio parahaemolyticus RIMD 2210633] gi|149745897|gb|EDM57027.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810] gi|308086350|gb|EFO36045.1| peptide chain release factor 1 [Vibrio parahaemolyticus Peru-466] gi|308110855|gb|EFO48395.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ4037] gi|308114221|gb|EFO51761.1| peptide chain release factor 1 [Vibrio parahaemolyticus K5030] Length = 362 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLAAAEEMAKE--DDEEMREMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E++R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|237748574|ref|ZP_04579054.1| peptide chain release factor 1 [Oxalobacter formigenes OXCC13] gi|229379936|gb|EEO30027.1| peptide chain release factor 1 [Oxalobacter formigenes OXCC13] Length = 360 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L NR EI+ + + D Y KL++E+A + P+++ + Y Q + Sbjct: 1 MKPSMLAKLEQLANRLTEIDELLMQPDVASDQDNYRKLSKEHAELGPVVALYNDYVQVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++ AQ E+ A E ++ +E+++ +LLPKD +DDK+ LEIR Sbjct: 61 DVDAAQEMLA----DPEMKEFAQEEISAAEGKMTAIEDDLQLMLLPKDPNDDKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY R+A +WKVE++S+S+++ GGY+E++ + G V+SR+K Sbjct: 117 AGTGGDESALFAADLLRMYSRFAEKNRWKVEIVSASESELGGYREVIVRLIGNDVYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PEA + DV I DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPVTETQGRIHTSACTVAVMPEADDVSDVHINPADIRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH PTGI+V ++SQH+N+ +AM+VL AR+ D + + + +A RK Sbjct: 237 INKTDSAIRITHFPTGIVVECQDDRSQHKNKAQAMQVLAARIKDRQMQEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTLYKLE+++ G +D+++N L H+A+++ Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLEFIMDGDMDELVNALAAEHRAELLAEM 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|317486540|ref|ZP_07945363.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6] gi|316922215|gb|EFV43478.1| peptide chain release factor 1 [Bilophila wadsworthia 3_1_6] Length = 356 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 177/353 (50%), Positives = 254/353 (71%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ +F ++E +++ D Y KLT+ ++ + P++ Y + KQ D Sbjct: 4 KLESLERKFLDLEQELADPTVFNDQDRYRKLTKAHSDLKPVVDIFRQYRELKQNLADNQE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D +IR++A E+ +IE+++ ELE+++ LLLP D D+K+ ILEIRAGTGG E Sbjct: 64 LLNDA--DPDIREMAHEEIKSIEEKLPELEHDLKVLLLPTDPLDEKNIILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA WKVE++S S++D+GGYKE++A ISG V+SR+KFESG HR Sbjct: 122 AALFGGDLFRMYCRYAEKMGWKVEIMSQSESDNGGYKEVIALISGDKVYSRLKFESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVA++PEA E+D+D+ ED+R D R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPATESQGRIHTSAATVAIMPEAEEVDLDLKPEDLRFDVYRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V + KSQH+N+ + +K+L +RL +++ + R+ Q+G+GDRS Sbjct: 242 RVTHIPTGLVVCCQDEKSQHKNKAKGLKILCSRLLQMKQDEQNAALADQRRAQVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF QGR+TDHRINLTLY L VL+G I ++++ L+T Q + + + + Sbjct: 302 ERIRTYNFPQGRVTDHRINLTLYSLGKVLEGEIQELVDALVTHAQTEALKAQA 354 >gi|240950074|ref|ZP_04754376.1| peptide chain release factor 1 [Actinobacillus minor NM305] gi|240295449|gb|EER46204.1| peptide chain release factor 1 [Actinobacillus minor NM305] Length = 360 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ + ++EYA + ++S + + + Sbjct: 1 MKDSIINKLESLSERHEELQALLGDATIINDQDKFRAYSKEYAQLEEVVSTFNRWKKLHS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++D+A E+ + EI +LE + LLLPKD +D+ +C LEIR Sbjct: 61 DIEEAQILL----DDPDMKDMAAEEIEENKAEIEQLEQNLQILLLPKDPNDEYNCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RYA ++W++E LS+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYAEGKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE+++ A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEKEKQAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|119361546|sp|Q4QKS1|RF1_HAEI8 RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 360 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 257/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 1 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWCVEMLSANESEQGGYKEVIVKVSGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|182677881|ref|YP_001832027.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica ATCC 9039] gi|238691232|sp|B2IHL7|RF1_BEII9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|182633764|gb|ACB94538.1| peptide chain release factor 1 [Beijerinckia indica subsp. indica ATCC 9039] Length = 358 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 186/356 (52%), Positives = 255/356 (71%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ + R EI R++E+P ++ L+ E A + + I Y + E + Sbjct: 1 MLPQDKLDLILRRHEEISARLTENPDAATFVSLSRELAGLDEVAQAIRAYRDEMTEISGM 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++ E+ LA+ E+ + + E + LLPKD DD+KS ILEIRAGTGG Sbjct: 61 EAMLADPATEPELLALAEEELQDARQRLGAFEQHLRIALLPKDADDEKSAILEIRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA + W VE+LS S+ GGYKEIVA I+G+GVF+++KFESG Sbjct: 121 DEAALFAGDLFRMYQRYAEAKGWGVEILSVSEGTAGGYKEIVAEITGKGVFAKLKFESGT 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAATVAVLP+A E+DV+I D++IDTMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTETQGRIHTSAATVAVLPQAEEVDVEINEADLKIDTMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+PTG ++ E+SQH+NR RAM +LR+R+YD +R+++ ER+A+RK Q+GSGD Sbjct: 241 AIRITHLPTGTVIFVQDERSQHKNRARAMSLLRSRIYDAKRQQLEAERAADRKAQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D++I+ L+T +QA + ++ Sbjct: 301 RSERIRTYNFPQGRLTDHRINLTLYKLDKVMTGEALDEVIDALITDYQAAQLAASE 356 >gi|330873307|gb|EGH07456.1| peptide chain release factor 1 [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 360 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYTQLARVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|254428729|ref|ZP_05042436.1| peptide chain release factor 1 [Alcanivorax sp. DG881] gi|196194898|gb|EDX89857.1| peptide chain release factor 1 [Alcanivorax sp. DG881] Length = 361 Score = 292 bits (748), Expect = 4e-77, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ +S+ + + + L+ EYA I P++ Y Q Sbjct: 1 MKASLQGKLDKLADRFEELAGLLSDPDVIGNQNQFRDLSREYAEIDPVVKCYQAYLQAAD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +SD ++R++ E + + EL E+ L+LPKD D + LE+R Sbjct: 61 NLDAARAM--QDDSDPDMREMGAEEARDAQARMEELAEELQKLMLPKDPRDGANVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA R WKVE++S+S+ + GGYKE++A + G GV+SRMK Sbjct: 119 AGTGGDEAAIFAGDLFRMYSKYADQRGWKVEMVSASEGEHGGYKEVIARVIGDGVYSRMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVA++ EA + D+ I ED+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAIMAEAEQLGDITIRNEDLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++V E+SQH+N+ RAM +L A+LYD ++ E++A RK Sbjct: 239 VNTTDSAVRITHLPTGVVVECQDERSQHKNKARAMSLLSAKLYDAQQNAAHAEQAAERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR++DHRINLTLY+L +++G +D+++ LL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVSDHRINLTLYRLGELMEGDMDELLGALLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|256821856|ref|YP_003145819.1| peptide chain release factor 1 [Kangiella koreensis DSM 16069] gi|256795395|gb|ACV26051.1| peptide chain release factor 1 [Kangiella koreensis DSM 16069] Length = 364 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 252/355 (70%), Gaps = 7/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L +R EI + + + + + L++EY+ + +++ Y++ ++ + Sbjct: 8 EKLQGLVDRHEEISALLGDPDVIGDQNKFRDLSKEYSQLEEVVNTFQRYEEAEESLKAAE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D ++R++AQ E+ + +I LE E+ LLLP+D +DDK+ LEIRAGTGG Sbjct: 68 EMLKDE--DPDMREMAQEELKDAKGQIELLEVEMQKLLLPRDPNDDKNTFLEIRAGTGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +YA ++W+VEV+S SD + GGYKEI+ ISG V+S +KFESG H Sbjct: 126 EAAIFAGDLFRMYSKYAEKKRWQVEVISQSDGEHGGYKEIIVRISGDSVYSHLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE+ GR+HTSA TVAV+PEA E ++I D++IDT RASG+GGQHVN TDS Sbjct: 186 RVQRVPETESQGRIHTSACTVAVMPEADELDAIEINPADLKIDTFRASGAGGQHVNKTDS 245 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+PTG++V E+SQH+N+ +AM VL+ARL E+ + +E++ R+ +G+GD Sbjct: 246 AIRITHLPTGVVVECQDERSQHKNKAKAMSVLQARLTAAEQAKAQSEQTEMRRNLVGTGD 305 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RS+RIRTYNF QGR+TDHRINLTLYKL+ +++G ID I+ PL+ HQA + + S Sbjct: 306 RSDRIRTYNFPQGRMTDHRINLTLYKLDEIMEGDIDQIVGPLIQEHQADQLAALS 360 >gi|70732476|ref|YP_262238.1| peptide chain release factor 1 [Pseudomonas fluorescens Pf-5] gi|119361580|sp|Q4K695|RF1_PSEF5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|68346775|gb|AAY94381.1| peptide chain release factor 1 [Pseudomonas fluorescens Pf-5] Length = 360 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + ++EYA + PI++ + + Sbjct: 1 MKASLLSKLDILQDRFEELTALLGDAEVISDQAKFRAYSKEYAEVEPIVATYKQVLKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D +D ++R++A EV ++++ ELE+ + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--NDPDLREMAAEEVREAKEQLAELESSLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRLEILSENEGEHGGYKEVIARVEGESVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAVLPE E + ++I D+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIP+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHIPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L+ +L G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLDEILAGGVEAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|312793258|ref|YP_004026181.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180398|gb|ADQ40568.1| peptide chain release factor 1 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 355 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++++ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQPQEWQKLMKEHSNLQPIVEKFREYKRILNTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDLDEDFEKLVKEELNQAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGELDEIIDALITHFQTERLKEVG 355 >gi|293602161|ref|ZP_06684612.1| peptide chain release factor RF1 [Achromobacter piechaudii ATCC 43553] gi|292819431|gb|EFF78461.1| peptide chain release factor RF1 [Achromobacter piechaudii ATCC 43553] Length = 356 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 246/358 (68%), Gaps = 9/358 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L NR E++ +++ +D + KL+ E A + P++ + + + +++ Sbjct: 1 MRSRLEHLCNRLTEVDALLAQPETASDMDRFRKLSRERAELEPVVEAFTAFARTEEDLAT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ SD +++ +A+ E+ ++ LE+ + LLLP+D +D +S LEIRAGTG Sbjct: 61 AQEML----SDPDMKAMAEDEIKTGRVKLESLESALQLLLLPRDPNDGRSVFLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDL RMY RYA R W+VE++S S ++ GGYKE++A I G G + R+KFESG Sbjct: 117 GDESALFSGDLLRMYTRYAETRGWRVELMSESASELGGYKEVIARIDGDGAYGRLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVPATEA GR+HTSA TVAV+ EA E+ I D+RIDT RASG+GGQH+N T Sbjct: 177 AHRVQRVPATEAQGRIHTSACTVAVMAEADEMSEIVINANDLRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK IG+ Sbjct: 237 DSAVRITHLPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKETRERQSKEAAERKSLIGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++ L+ HQA+ + + + Sbjct: 297 GDRSERIRTYNFPQGRVTDHRINLTLYKLQQIMEGDLEELTGALIAEHQAEQLAALGD 354 >gi|260914191|ref|ZP_05920664.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325] gi|260631824|gb|EEX50002.1| peptide chain release factor RF1 [Pasteurella dagmatis ATCC 43325] Length = 360 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R E+E + ++ + + ++EYA + ++ + ++Q Sbjct: 1 MKPSIISKLDSLKERHEELEALLGDASVISDQEKFRAYSKEYAQLEDVVKCFARWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D ++++AQ E+ + E+ ++E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NIEEAQLLL----DDLSMKEMAQEEIEECKAELEQVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W++EVLS+++++ GGYKEI+ +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAEGKRWRIEVLSANESEQGGYKEIIVKVSGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ E++R +++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIVQAEKERQEQQQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|113869288|ref|YP_727777.1| peptide chain release factor 1 [Ralstonia eutropha H16] gi|113528064|emb|CAJ94409.1| protein chain release factor A (RF-1) [Ralstonia eutropha H16] Length = 356 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 248/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+ ++ + +D Y KL+ E+A +SP+ + Y Q + + Sbjct: 4 KLDQLAERLDEVNALLAREDATAKIDQYRKLSREHAELSPVAEQYGQYRQAQDDLATAQA 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++D A E+ + + LE + LLLPKD +DD++ +LEIRAGTGG E Sbjct: 64 LL----DDPEMKDFAADEIASARARLEGLEASLQRLLLPKDPNDDRNLLLEIRAGTGGEE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +ALF GDL RMY RYA ++W+VEV+S S +D GGYKE++ I+G FSR+KFESG HR Sbjct: 120 SALFAGDLLRMYTRYAERQRWQVEVMSESASDLGGYKEVIVRIAGDAAFSRLKFESGGHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATEA GR+HTSA TVAV+PEA E+ +V+I D+RIDT RASG+GGQHVN TDSA Sbjct: 180 VQRVPATEAQGRIHTSACTVAVMPEADEVGEVEINPADLRIDTFRASGAGGQHVNKTDSA 239 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQH+N+ +AMKVL AR+ D++ + + ++ R+ IGSGDR Sbjct: 240 VRLTHLPTGIVVECQDDRSQHRNKDKAMKVLAARIKDMQTRAAQAKEASTRRNLIGSGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D++++ L + HQA + + E Sbjct: 300 SDRIRTYNFPQGRVTDHRINLTLYKIDMIMDGDMDELLSALASEHQADQLAALGE 354 >gi|91228927|ref|ZP_01262825.1| peptide chain release factor 1 [Vibrio alginolyticus 12G01] gi|269965455|ref|ZP_06179574.1| Peptide chain release factor 1 [Vibrio alginolyticus 40B] gi|91187510|gb|EAS73844.1| peptide chain release factor 1 [Vibrio alginolyticus 12G01] gi|269829934|gb|EEZ84164.1| Peptide chain release factor 1 [Vibrio alginolyticus 40B] Length = 362 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L+ EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSREYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMANE--DDEEMREMAQEEIKEAKATIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|325267755|ref|ZP_08134406.1| peptide chain release factor RF1 [Kingella denitrificans ATCC 33394] gi|324980879|gb|EGC16540.1| peptide chain release factor RF1 [Kingella denitrificans ATCC 33394] Length = 358 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 250/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ + +D Y +L +E+A ++PI+ Y Q + Sbjct: 1 MKPSILDKLQNLAHRLEEVTALLGSPEATSDMDNYRRLNQEHAELTPIVETYRAYTQAES 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD E++D A E+ A + +I L+ + LLLPKD DDDK+ +EIR Sbjct: 61 DLAEAQEML----SDPEMKDFAAEEIEAAKAKIEMLDLALQKLLLPKDADDDKNIFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+ E++S++++D GGYKE++ + G G +S++K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQTEIVSANESDLGGYKEVIVRLVGLGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E +++ +D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELAKIELNDKDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +A+KVL ARL D++++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDGRSQHTNKEKALKVLAARLNDMQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I L+ HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITAALMAEHQAEQLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|289523200|ref|ZP_06440054.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503743|gb|EFD24907.1| peptide chain release factor 1 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 358 Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 253/354 (71%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ DL+ ++ E+E ++S+ + +L +E++ +S ++ K Y Q ++ ++ Sbjct: 6 EKLDDLERKYQELETKLSDPDVISNPAVLQRLAKEHSEMSKVVEKYREYRQAQKRLEEA- 64 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D ++R+LA+ E ++ + ELE E+ LLLPKD +D++S I+EIRAG GG Sbjct: 65 -LALTEEDDEDLRELAREEANQLKNIVEELEEELALLLLPKDPNDERSVIVEIRAGAGGE 123 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL+RMY RYA ++WKVE+L++++ GGYKEIV + G+ +S +K+ESGVH Sbjct: 124 EAALFAADLYRMYVRYAERKRWKVELLTANETGIGGYKEIVFRVEGQDAYSVLKYESGVH 183 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEASGR+HTS ATVAVLPE E+DV+I ED++IDT RASG+GGQ+VN TDSA Sbjct: 184 RVQRVPVTEASGRIHTSTATVAVLPEPDEVDVEIRPEDLKIDTFRASGAGGQYVNMTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V E+SQ +NR +AM++LRA+LYD+E +R ++ R+ QIGSGDR Sbjct: 244 VRITHIPTGIVVTCQDERSQLKNRAKAMQLLRAKLYDMEIRRQQEAMASERRGQIGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL+ L+ +L+G +D+++ L TA Q + + Sbjct: 304 SERIRTYNFPQNRVTDHRIGLTLHNLDEILEGDLDELLYALATADQMEKLKLLG 357 >gi|145632952|ref|ZP_01788685.1| peptide chain release factor 1 [Haemophilus influenzae 3655] gi|144986608|gb|EDJ93174.1| peptide chain release factor 1 [Haemophilus influenzae 3655] Length = 361 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 259/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDASVISDQDKFRAYSKEYSQLEDVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|254230550|ref|ZP_04923918.1| peptide chain release factor 1 [Vibrio sp. Ex25] gi|262394972|ref|YP_003286826.1| peptide chain release factor 1 [Vibrio sp. Ex25] gi|151936922|gb|EDN55812.1| peptide chain release factor 1 [Vibrio sp. Ex25] gi|262338566|gb|ACY52361.1| peptide chain release factor 1 [Vibrio sp. Ex25] Length = 362 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L+ EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSREYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMANE--DDEEMREMAQEEIKEAKATIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|330967416|gb|EGH67676.1| peptide chain release factor 1 [Pseudomonas syringae pv. actinidiae str. M302091] Length = 360 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYTQLARVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGESVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|239996062|ref|ZP_04716586.1| peptide chain release factor 1 [Alteromonas macleodii ATCC 27126] Length = 361 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 256/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E++ + + + D + L++E++ + +++ + Y Q ++ Sbjct: 1 MKESVVRKLEHLVERFEEVQALLGDPGVIGDQDKFRNLSKEFSQLEDVVAGFNAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ + D+E+R++AQ E+ + EI LE E+ LLLPKD +DD +C LEIR Sbjct: 61 NLASAQEMLNE--DDAEMREMAQEEMKDAKAEIERLETELQVLLLPKDPNDDNNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA R W+VE++++++ + GGYKE++A +SG GV+ +K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVNANEGEHGGYKEVIANVSGDGVYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I ++RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVAVLPEIPESQAIEINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL+ARL +E ++ A E ++ RK Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLQARLNQIEEEKRAAEEASTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLT+Y+L+ V++G + +I+P+L HQA ++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTIYRLDEVVEGDLKQLIDPILQEHQADLLASL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|315924395|ref|ZP_07920617.1| peptide chain release factor RF1 [Pseudoramibacter alactolyticus ATCC 23263] gi|315622274|gb|EFV02233.1| peptide chain release factor RF1 [Pseudoramibacter alactolyticus ATCC 23263] Length = 364 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 179/356 (50%), Positives = 247/356 (69%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ ++ ++ +S+ + K L +E+A + PII K Y + Q D Sbjct: 9 MLEKLDFLEEKYQKLNQEISDPAVIADQAKWQDLMKEHAHMEPIIQKYKAYREADQAIAD 68 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D E + + + E+ ++ LE E+ LLLPKD +D+++ I+EIRAG G Sbjct: 69 SKEMLADKSIDPEFKAMCEDELAEQTAQLATLEEELKILLLPKDPNDERNVIVEIRAGAG 128 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + WK+E+LSS+ D GG KEI I G+G +SR+K+ESG Sbjct: 129 GDEAALFAGDLFRMYSRYAERQSWKIEILSSNILDLGGIKEINFAIQGQGAYSRLKYESG 188 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA +++VD+ DIR+D R+SG+GGQ VNTTD Sbjct: 189 VHRVQRVPETESGGRIHTSTATVAVLPEADDVEVDLNPNDIRVDVYRSSGNGGQCVNTTD 248 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+G++V EKSQ +N+ +AMKVL+ARLYD+E ++ + S RK Q+G+G Sbjct: 249 SAVRLTHIPSGLVVTCQDEKSQIKNKAKAMKVLKARLYDLEMQKQQSAISEERKSQVGTG 308 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRITDHRI T+++LE L G ID++IN L+T QAK + A Sbjct: 309 DRSERIRTYNFPQGRITDHRIGQTVHQLEAFLDGEIDEMINALITTDQAKKLEQAG 364 >gi|238026092|ref|YP_002910323.1| peptide chain release factor 1 [Burkholderia glumae BGR1] gi|237875286|gb|ACR27619.1| Peptide chain release factor 1 [Burkholderia glumae BGR1] Length = 360 Score = 292 bits (747), Expect = 6e-77, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 250/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R AE+ +S +D Y KLT E+A I P++ + + + + Sbjct: 1 MKTSMQSKLDQLSSRLAELNELLSRENVTADLDQYRKLTREHAEIGPVVEQYAQWRLARG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +R+ A+ E+ + + LE E+ +LLPKD +DD++ +EIR Sbjct: 61 DEAAAQELLA----DASMREFAEEEIREARERMARLEAELQTMLLPKDPNDDRNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESGSDLGGYKEVIVRIAGHGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIAEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+N+ RA+KVL AR+ D + +A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAREAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L + HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEAIMDGDLDELIASLASEHQAELLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|167855820|ref|ZP_02478572.1| peptide chain release factor 1 [Haemophilus parasuis 29755] gi|219871001|ref|YP_002475376.1| peptide chain release factor 1 [Haemophilus parasuis SH0165] gi|254790883|sp|B8F526|RF1_HAEPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167853033|gb|EDS24295.1| peptide chain release factor 1 [Haemophilus parasuis 29755] gi|219691205|gb|ACL32428.1| peptide chain release factor 1 [Haemophilus parasuis SH0165] Length = 360 Score = 292 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ + K ++EY+ + ++S + + + Sbjct: 1 MKASIINKLDSLSERHEELQALLGDATIISDQEKFCAYSKEYSQLEEVVSTFNRWKKLHS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++++A E+ A + EI +LE + LLLPKD +D+ +C LEIR Sbjct: 61 DIEEAQILL----DDPDMKEIAAEEIEANKAEIEQLEQNLQILLLPKDPNDEYNCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RYA ++W++E LS+++++ GGYKEI+ ISG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYAESKRWRIEELSANESEQGGYKEIIVKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ VE+++ A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALAVLASRIVQVEKEKQAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|89070966|ref|ZP_01158192.1| peptide chain release factor 1 [Oceanicola granulosus HTCC2516] gi|89043473|gb|EAR49687.1| peptide chain release factor 1 [Oceanicola granulosus HTCC2516] Length = 351 Score = 292 bits (746), Expect = 6e-77, Method: Composition-based stats. Identities = 183/354 (51%), Positives = 250/354 (70%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + + R +E RM+E I + EY+ + P++ I+ Y E ++ Sbjct: 1 MIPNDTLDQIVARQQYLEARMAEGAPGAEMIAIAREYSDLKPVVETIARYRALTAELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + E+R LA+ E+ +++ + E E + LLP+D D + ++EIR GTGG Sbjct: 61 QAMLAE----PEMRGLAEEEIARLKEALPEAEQALRLALLPRDAADARPAMIEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA + W E++ + GG +E+ A ++G GVF+R+KFESGV Sbjct: 117 EEAALFAADLLRMYQRYADAKGWSFEIIDEQATELGGIRELTARVAGDGVFARLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEAA++D+DI DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPETESGGRIHTSAATVAVLPEAADVDIDIAPADIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ RL+D+ER+R ++ERSA RK Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKTRLFDMERQRASDERSAARKAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY+LE +L G +D+ I+ L+ QA+ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYRLEEILGGDLDETIDALIAETQARQLAEME 350 >gi|269792432|ref|YP_003317336.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100067|gb|ACZ19054.1| peptide chain release factor 1 [Thermanaerovibrio acidaminovorans DSM 6589] Length = 357 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 170/358 (47%), Positives = 244/358 (68%), Gaps = 6/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 K++ ++++ F +IE RM++ +V L+ ++ + P++ Y + + Sbjct: 1 MDFLKKLEEIESAFQDIESRMADPEISNNVQEMQSLSRRHSELYPVVQAFREYRKVMRSL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ ++ D E+R LA+ EV + + LE ++ LLLP+D +D K+ I+EIRAG Sbjct: 61 EEAQELL--EQDDEEMRQLAKEEVQRLSDMLPGLEQDLKVLLLPRDPNDHKNVIIEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DLFRMY RY + W+ E++ ++ GGYKE+V + G G +S++KFE Sbjct: 119 AGGDEAALFAADLFRMYTRYTERQGWRYEIMEMNETGIGGYKEVVFLVKGEGAYSKLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQR+P TEASGR+HTS ATVAVLPEA ++DV I ED++IDT RASG+GGQ+VN Sbjct: 179 SGVHRVQRIPVTEASGRIHTSTATVAVLPEAEDVDVQIRPEDLKIDTYRASGAGGQYVNM 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTG++V E+SQ +NR +AM++LRARLYD E ++ + +A RK Q+G Sbjct: 239 TDSAVRITHIPTGLVVTCQDERSQLKNRAKAMQLLRARLYDQELQKQQAQMAAERKGQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYN+ Q R+TDHRI TLYKL+ VL G + ++I L A QA+ + + + Sbjct: 299 TGDRSERIRTYNYPQNRLTDHRIGFTLYKLDQVLDGDLYELIEALRVADQAEKLKTLA 356 >gi|325273244|ref|ZP_08139524.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51] gi|324101621|gb|EGB99187.1| peptide chain release factor 1 [Pseudomonas sp. TJI-51] Length = 360 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+ + + + + Sbjct: 1 MKASLLNKLEILQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVYAAYKEWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|254465069|ref|ZP_05078480.1| peptide chain release factor 1 [Rhodobacterales bacterium Y4I] gi|206685977|gb|EDZ46459.1| peptide chain release factor 1 [Rhodobacterales bacterium Y4I] Length = 351 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 257/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF +E M++ L +EY+ + P+ +++ Y + + + ++ Sbjct: 1 MVPEERLEQILQRFQYLEAAMADGAGGGDIAALAKEYSDLRPVAEQVAAYRKLQSDLREA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++++LA E+ A++ I E E+ + LLPKD D + +LEIR GTGG Sbjct: 61 ELMLA----DPDMKELAAEEIPALKAAIPEAEHALQLALLPKDAADSRPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA + WK +++ + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEGQGWKFDIIEEQMTELGGIKEVVAHIKGDNVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMRASG+GGQHVNTTDS Sbjct: 177 HRVQRVPATESGGRIHTSAATVAVLPEAEDVDIHIDANDIRIDTMRASGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+VTSSEKSQH+NR AM+VL+ RLYD+ER+R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGIIVTSSEKSQHRNREIAMQVLKTRLYDLERQRIDSERSADRASQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+II+ L +QA+++ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLDQVMGGDLDEIIDALTADNQARLLAEMGQ 351 >gi|187931103|ref|YP_001891087.1| peptide chain release factor 1 [Francisella tularensis subsp. mediasiatica FSC147] gi|238691540|sp|B2SFF6|RF1_FRATM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|187712012|gb|ACD30309.1| peptide chain release factor 1 [Francisella tularensis subsp. mediasiatica FSC147] Length = 361 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLILEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|134294603|ref|YP_001118338.1| peptide chain release factor 1 [Burkholderia vietnamiensis G4] gi|166223537|sp|A4JB50|RF1_BURVG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|134137760|gb|ABO53503.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia vietnamiensis G4] Length = 360 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSVRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ + + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DEAAAQELLA----DASMRDFAEEAIRSARERMTRLEGELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEALMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|237745909|ref|ZP_04576389.1| peptide chain release factor 1 [Oxalobacter formigenes HOxBLS] gi|229377260|gb|EEO27351.1| peptide chain release factor 1 [Oxalobacter formigenes HOxBLS] Length = 360 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R AEI+ + + V Y KL E+A ++P+++ + Q +Q Sbjct: 1 MKPSMLAKLEHLSDRLAEIDELLMQPEVVSDQENYRKLNREHAELAPVVALYRDFSQVRQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++ AQ E+ EK+I +E E+ +LLPKD DD K+ LEIR Sbjct: 61 DIDTAREMLA----DPEMKEFAQQEIDGAEKKIAGIEEELQLMLLPKDPDDGKNIYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A +WK E++S+S ++ GGY+E++ + G+ V+SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRFAEKNRWKAEIVSASMSELGGYREVIVRLVGKDVYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PEA + DV I DIR+DT RASG+GGQH Sbjct: 177 FESGGHRVQRVPVTETQGRIHTSACTVAVMPEADDVSDVHINPADIRVDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+N+ +AM+VL AR+ D + + + +A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDDRSQHKNKAQAMQVLAARIKDRQMQEQQAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTLYKLE+++ G +D++++ L+ H+A ++ Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLEFIMDGDMDELVSALVAEHRAGLLAEL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|206890162|ref|YP_002248216.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|238054474|sp|B5YIQ7|RF1_THEYD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|206742100|gb|ACI21157.1| peptide chain release factor 1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 353 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 183/355 (51%), Positives = 257/355 (72%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++N++ +I +S+ D Y+K + E A + PI++K Y + ++ ++ Sbjct: 1 MLEKLMEVENKYEKITQTLSDPKVFSNKDEYMKYSREQAELEPIVTKFREYKRILKQIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I + D ++++LA+ E+ ++K ++E E+ LLLPKD D+K+ ILEIRAGTG Sbjct: 61 AEEMIK--SGDPDLKELAEEELQQLKKIKPQIEQELKVLLLPKDPRDEKNVILEIRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY +YA + WKVE++ S GG+KEI+ATISG+G FS++K+ESG Sbjct: 119 GEEAALFAANLFRMYAKYAESKGWKVEIIDSHPTGLGGFKEIIATISGKGAFSKLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TEASGR+HTS ATVAVLPEA E+D+ I +D+RIDT +SG GGQ VNT Sbjct: 179 VHRVQRIPVTEASGRIHTSTATVAVLPEAEEVDIKIDEKDLRIDTFCSSGPGGQSVNTAY 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI HIPTGI+V E+SQ +NR +AMKVLRARL ++ER++ ER+A RK Q+G+G Sbjct: 239 SAVRIVHIPTGIIVQCQDERSQIKNREKAMKVLRARLLEIERQKKEAERAAERKGQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +RSERIRTYNF Q R+TDHRI LTLYKLE VL G ID+II+ L++ +QA+ + Sbjct: 299 ERSERIRTYNFPQNRVTDHRIGLTLYKLEQVLNGNIDEIIDALISYYQAEKLKEM 353 >gi|68249924|ref|YP_249036.1| peptide chain release factor 1 [Haemophilus influenzae 86-028NP] gi|68058123|gb|AAX88376.1| peptide chain release factor 1 [Haemophilus influenzae 86-028NP] Length = 361 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 257/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWCVEMLSANESEQGGYKEVIVKVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|226942019|ref|YP_002797093.1| PrfA [Laribacter hongkongensis HLHK9] gi|254790885|sp|C1D5R7|RF1_LARHH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226716946|gb|ACO76084.1| PrfA [Laribacter hongkongensis HLHK9] Length = 359 Score = 292 bits (746), Expect = 7e-77, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 251/361 (69%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ + + +DAY +LT E+A ++P++ + + Q + Sbjct: 1 MKPSILTKLAQLSDRLDEVTGLLGDPDVTRDMDAYRRLTREHAELTPVVEQYLAWRQTEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++++LA+ E+ ++ + LE E+ LLLPKD +D+++ LE+R Sbjct: 61 DLASARDLL----DDPDMKELAEAELSDGQERLAVLELELQKLLLPKDPNDERNIFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DLFRMY RYA +W+VE++S+S+ND GG+KE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAADLFRMYSRYAERNRWQVEIVSASENDLGGFKEVIARIVGFGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA E V++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADELAAVELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+ VL AR+ DV+++ + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKARALAVLAARIQDVQQRARQQKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ V+ G + ++ + L HQA+++ Sbjct: 297 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYRLDAVMDGDLAELTDALTAEHQAELLAQL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|254373464|ref|ZP_04988952.1| peptide chain release factor 1 [Francisella tularensis subsp. novicida GA99-3549] gi|151571190|gb|EDN36844.1| peptide chain release factor 1 [Francisella novicida GA99-3549] Length = 361 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|156973549|ref|YP_001444456.1| peptide chain release factor 1 [Vibrio harveyi ATCC BAA-1116] gi|166223617|sp|A7MY68|RF1_VIBHB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|156525143|gb|ABU70229.1| hypothetical protein VIBHAR_01250 [Vibrio harveyi ATCC BAA-1116] Length = 362 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLAAAEDMANE--DDEEMREMAQEEIKEAKEAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLQSLIDPVVQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|110680314|ref|YP_683321.1| peptide chain release factor 1 [Roseobacter denitrificans OCh 114] gi|119361597|sp|Q164F8|RF1_ROSDO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|109456430|gb|ABG32635.1| peptide chain release factor 1 [Roseobacter denitrificans OCh 114] Length = 351 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 189/355 (53%), Positives = 256/355 (72%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E M+ L +EY+ + P++ +IS Y Q + +D Sbjct: 1 MIPLDRLRQITERFQYLEAAMAAGDGAADIAALAKEYSDLRPVVEQISAYQQLLSDLEDA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D ++ LA+ E+ ++ + + E + LLPKD D K +LEIR GTGG Sbjct: 61 AEMLG----DPDMAPLAEEEIPRLKSALPQAEAALQLALLPKDKADAKPAMLEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA + WKV+++ + + GG KE+VA I G VF+R+K+ESGV Sbjct: 117 DEAALFAGDLFRMYQRYAETQGWKVDLIELQETELGGIKEVVAHIKGADVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMR+SG+GGQHVNTTDS Sbjct: 177 HRVQRVPSTESGGRIHTSAATVAVLPEAEDVDIHIDANDLRIDTMRSSGAGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTG++VTSSEKSQH+NR AM+VL+ARLYD+ER R+ +ERSA+R Q+GSGDR Sbjct: 237 AVRITHLPTGLVVTSSEKSQHRNREIAMQVLKARLYDLERSRVDDERSADRAAQVGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLY+L+ VLQG +D+II+ L QA+++ + Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYRLDAVLQGDLDEIIDALTAHAQAQLMADMGQ 351 >gi|61252075|sp|P43917|RF1_HAEIN RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 360 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 1 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ ++G GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVTGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|328542097|ref|YP_004302206.1| peptide chain release factor 1 [polymorphum gilvum SL003B-26A1] gi|326411847|gb|ADZ68910.1| Peptide chain release factor 1 [Polymorphum gilvum SL003B-26A1] Length = 357 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 192/356 (53%), Positives = 267/356 (75%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ ++ L RFAEIE RMS +P Y++L+ EY+ + P+++++ + + E D Sbjct: 1 MLAQAKLDTLLARFAEIEHRMSSNPDAATYVRLSREYSDLEPLVARVRALRRAEAELADA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D D ++ +LA+ E A+ + L E+ LLPKD+ D ILE+RAGTGG Sbjct: 61 EALLEDSVGDPDMAELAEAEREALAARVEALTQEVRIGLLPKDSADTNDAILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA L+ WKVE+LS+S+ + GG+KE++A++SG VF+R+KFESGV Sbjct: 121 DEAALFAGDLFRMYQRYADLKGWKVEILSASEGEMGGFKEVIASVSGENVFARLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLP+A ++D+D+ D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESGGRIHTSAATVAVLPQAEDVDIDVHDSDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQH+N+ +AM++LRA++YD ER++ A+ER+ R+LQ+GSGD Sbjct: 241 AVRITHLPTGIVVAVQDERSQHKNKAKAMQLLRAKIYDAEREKAASERTEARRLQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRI LTLYKL+ V+ G +D++I+ L HQA ++ + Sbjct: 301 RSERIRTYNFPQGRVTDHRIGLTLYKLDQVISGEALDEVIDALTMDHQASLLAAEE 356 >gi|312134918|ref|YP_004002256.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL] gi|311774969|gb|ADQ04456.1| peptide chain release factor 1 [Caldicellulosiruptor owensensis OL] Length = 355 Score = 292 bits (746), Expect = 8e-77, Method: Composition-based stats. Identities = 173/354 (48%), Positives = 247/354 (69%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++++ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKIADPDIISQTQEWQKLMKEHSNLQPIVEKFREYKRILNTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDIDEDFEKLVKEELNWAKEQKEIVERDLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +I+V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDIEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSLQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGELDEIIDALITHFQTERLKE 353 >gi|313497099|gb|ADR58465.1| PrfA [Pseudomonas putida BIRD-1] Length = 360 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+ + + + + Sbjct: 1 MKASLLNKLEILQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVYAAYKEWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|134301001|ref|YP_001114497.1| peptide chain release factor 1 [Desulfotomaculum reducens MI-1] gi|134053701|gb|ABO51672.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfotomaculum reducens MI-1] Length = 356 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++RF ++E ++S+ + + +L + ++ ++ ++ Y + K++ Q+ Sbjct: 3 DKLQALEDRFEQLESQISDPEVMADRAKWQQLVKSHSDLAEVVDVFRQYKKAKEDLQENK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D + + R++ ++E+ + +I E EN++ LLLPKD +DDK+ I+EIR GTGG Sbjct: 63 QMLEDK-LEPDFREMVELEIEELTSKIEEQENKLKILLLPKDPNDDKNVIMEIRGGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA + W+ E++ +++ D GG+KE+ I G+G FS +KFESGVH Sbjct: 122 EAALFAGDLFRMYSRYAEKKGWRTEIIDANETDLGGFKEVTFVIEGKGAFSTLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTSAATVAVLPEA E+D+DI DIRID ASG GGQ VNTT SA Sbjct: 182 RVQRVPATESGGRIHTSAATVAVLPEAEEVDIDINANDIRIDLFCASGPGGQCVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG +V EKSQH+N+ +AM+VLRARL D + + RK +GSGDR Sbjct: 242 VRITHIPTGTVVSCQDEKSQHKNKDKAMRVLRARLLDKAQDEQQKAIAGARKSMVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q RITDHRI LTL++LEYVLQG +D++I+ L+T QA+ + + E Sbjct: 302 SERIRTYNFPQNRITDHRIGLTLHRLEYVLQGDLDELIDALITTDQAERLKAVEE 356 >gi|254520297|ref|ZP_05132353.1| peptide chain release factor 1 [Clostridium sp. 7_2_43FAA] gi|226914046|gb|EEH99247.1| peptide chain release factor 1 [Clostridium sp. 7_2_43FAA] Length = 361 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 171/357 (47%), Positives = 246/357 (68%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E+A + I++ Y + Sbjct: 1 MLLDKLAFIENKYDELSVKISDPSIMANQNEWRKLCKEHADLEVIVTAYKEYRTVIDDLA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + SD E+R++ E+ + ELE I LLLPKD +DDK+ +EIR G Sbjct: 61 ANKEMLAEE-SDREMREMLSEEISDLTAREGELEKHIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W VE++S+++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGDEAALFAANLFRMYTRYAETQRWSVELMSANETDIGGFKEVVFMIKGSGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS ATVAVLPE +++++I +D+RID R+SG+GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVEIEINEKDLRIDVYRSSGNGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTG++V EKSQ +N+ +AMKVLR+RLY+ + +RK Q+GS Sbjct: 240 DSAVRITHIPTGVVVACQDEKSQLKNKEKAMKVLRSRLYEAAEAERNAGIAEDRKSQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRI LTLYKLE L G I+++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNYPQGRVTDHRIGLTLYKLESYLNGDIEEVINALITADQAEKMKKMG 356 >gi|253997606|ref|YP_003049670.1| peptide chain release factor 1 [Methylotenera mobilis JLW8] gi|253984285|gb|ACT49143.1| peptide chain release factor 1 [Methylotenera mobilis JLW8] Length = 360 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L R EI+ MS ++D Y KLT E+A I+PI+ + ++Q + Sbjct: 1 MKPSMITKLANLSERLDEIDRLMSSEGITDNMDNYRKLTREHAEITPIVEQYRAFEQTEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + T++ +D E++ AQ E+ A + ++ +E + LLLPKD +DDK+ LEIR Sbjct: 61 DINEAQTML----NDPEMKAFAQEEIEAGKAKLEAIEAALQTLLLPKDPNDDKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ LF GDL+RMY RYA + WKVEV+S+++ + GGYKEI+A I G G +S++K Sbjct: 117 AGTGGDESGLFAGDLYRMYSRYAERQGWKVEVMSANEGEMGGYKEIIAKIEGYGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVA+LPEA E+ + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPDTETQGRIHTSACTVAILPEADEVSDVVINPADVRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH PTGI+V +SQH N+ +A VL AR+ + ++ ++ RK Sbjct: 237 INKTDSAVRLTHAPTGIVVECQEGRSQHANKAQAFAVLAARIKAKQVDEQQSKIASERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYK++ + +G +D++I L HQA ++ S Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKIDAITEGDMDELIGALAAEHQADLLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|332184657|gb|AEE26911.1| Peptide chain release factor 1 [Francisella cf. novicida 3523] Length = 361 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANETIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|323702617|ref|ZP_08114279.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM 574] gi|323532436|gb|EGB22313.1| peptide chain release factor 1 [Desulfotomaculum nigrificans DSM 574] Length = 356 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 168/353 (47%), Positives = 247/353 (69%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+++F ++E ++S+ + K L + +A ++ ++ Y + + + ++ Sbjct: 4 KLQALEDKFEQLEGQISDPEIIADQAKWKQLVKAHADLTEVVDVFRQYKKVRSDLEESKL 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + + R++ ++E+ + K ELE ++ LLLPKD +D+K+ I+EIR GTGG E Sbjct: 64 ML-EEKLEPDFREMVELEIEELSKRKEELEQKLKILLLPKDPNDEKNVIVEIRGGTGGEE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY R+A + W+ E++ +++ D GG+KEI + G+G +S +KFESGVHR Sbjct: 123 AALFAGDLFRMYSRFAERKGWRTEIIDANETDLGGFKEITFVVEGKGAYSTLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVAVLPEA E+D++I DIRID ASG GGQ VNTT SAV Sbjct: 183 VQRVPATESGGRIHTSAATVAVLPEAEEVDIEINPNDIRIDLFCASGPGGQCVNTTQSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V EKSQH+N+ +AM+VLRARL D ++ ++ RK +G+GDRS Sbjct: 243 RITHIPTGIVVSCQDEKSQHKNKDKAMRVLRARLLDKAQQEQQQAIASTRKSMVGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRI LTL++L+ VL+G +D+II L+T QA+ + + Sbjct: 303 ERIRTYNFPQNRVTDHRIGLTLHRLDQVLEGDLDEIIEALITTDQAERLKAVE 355 >gi|329904245|ref|ZP_08273720.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium IMCC9480] gi|327548069|gb|EGF32798.1| Peptide chain release factor 1 [Oxalobacteraceae bacterium IMCC9480] Length = 360 Score = 291 bits (745), Expect = 9e-77, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ +D Y KLT E+A + P++ + + Sbjct: 1 MKPSMLVKLDQLADRLGELNELLTQEDLASDMDNYRKLTREHAELGPLVELYDSFRVAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + H ++ D +++D AQ E+LA ++E ++ +LLPKD +D+++ LEIR Sbjct: 61 DIATAHDMLA----DPDMKDFAQEEILAARARTEQIEADLQTMLLPKDPNDERNLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S S +D GGYKE++ + G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERNRWQVEMVSESSSDVGGYKEVIVRVIGNGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PE EI DI D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPTTETQGRIHTSACTVAVMPEVDEISDVDINPSDLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V ++SQH+N+ A+KVL AR+ D + + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDDRSQHKNKASALKVLAARIKDAQVREQQSKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL++++ G ++D+ L HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLNDLTGALAAEHQAELLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|251792741|ref|YP_003007467.1| peptide chain release factor 1 [Aggregatibacter aphrophilus NJ8700] gi|247534134|gb|ACS97380.1| peptide chain release factor 1 [Aggregatibacter aphrophilus NJ8700] Length = 360 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 259/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EY+ + ++ + ++Q Sbjct: 1 MKPSIITKLESLKERYEELEALLGDASVISDQDKFRAYSKEYSQLEDVVKCFNRWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ E E+ E+E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NLEEAKILL----DDPEMKEMAQMEIEESEAELTEVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA L++W+VEVLS ++++ GG+KEI+A +SG GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAELKRWRVEVLSENESEQGGFKEIIALVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG++V E+SQH+N+ +A+ VL +RL E+ ++A E++ R+ Sbjct: 237 INKTDSAVRITHIPTGMVVECQDERSQHKNKAKALSVLASRLVQQEQDKLAQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLATL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|208779474|ref|ZP_03246819.1| peptide chain release factor 1 [Francisella novicida FTG] gi|208744435|gb|EDZ90734.1| peptide chain release factor 1 [Francisella novicida FTG] Length = 361 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|121602027|ref|YP_988678.1| peptide chain release factor 1 [Bartonella bacilliformis KC583] gi|166223530|sp|A1URS5|RF1_BARBK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120614204|gb|ABM44805.1| peptide chain release factor 1 [Bartonella bacilliformis KC583] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 220/357 (61%), Positives = 286/357 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV LS ++ ++ RF IE +M+++P+ + Y+KL EYA + I++ I + +E Sbjct: 1 MVSLSQDRMKQIEKRFEIIESQMAQNPNAETYVKLASEYAELQQIVTPIRTLNALYKEVT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L + D+++ LAQ E++ + ++I +LE EI LLLPKD D+KS I+EIRAGT Sbjct: 61 ELEAMANTTQIDADMYALAQEELVLLRQKIEQLEQEIQILLLPKDIADEKSAIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA KWKVEV+S SD++ GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERYANAHKWKVEVVSLSDSEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE SGR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRVPETETSGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LR+RL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRSRLFDIERQKAESERSASRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ +++G +D++INPL++ HQ ++ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRIMEGDLDELINPLISNHQTALLTEIND 357 >gi|312127875|ref|YP_003992749.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis 108] gi|311777894|gb|ADQ07380.1| peptide chain release factor 1 [Caldicellulosiruptor hydrothermalis 108] Length = 355 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 248/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++++ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKIADPEIISQTQEWQKLMKEHSNLQPIVEKFREYKRILNTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE VL G +D+II+ L+T Q + + S Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQVLDGELDEIIDALITHFQTERLKEVS 355 >gi|326423672|ref|NP_759262.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6] gi|32171537|sp|Q8DFF9|RF1_VIBVU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46576703|sp|Q7MMY6|RF1_VIBVY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|319999027|gb|AAO08789.2| peptide chain release factor 1 [Vibrio vulnificus CMCP6] Length = 362 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + + Y Q ++ Sbjct: 1 MKASILTKLEMLVERYEEVQHLLGDPGVIGDQDKFRALSKEYSQLEEVTKCFTAYKQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I +L E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAAELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A R W++EV+S+++ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEAEHGGYKEMIAKVNGDGAYGFLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA++PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEAKRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLSEVMEGDLQSLIDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|307942489|ref|ZP_07657838.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4] gi|307774310|gb|EFO33522.1| peptide chain release factor 1 [Roseibium sp. TrichSKD4] Length = 359 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 192/356 (53%), Positives = 268/356 (75%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ +++ L +RFAE+E +MS +P Y+KL+ EY+ + P++ KI + ++E + Sbjct: 1 MLARQKLNTLLDRFAELEHQMSANPDPSTYVKLSREYSGLEPLVHKIRTLIKAEEELAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++D E+R+LA+ E + + L ++ LLPKD+ D ILE+RAGTGG Sbjct: 61 EAMLDDADTDPEMRELAEAERDELAASLETLTQDVRIGLLPKDSADANDAILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+R+A L WKVEVLS+S+ + GG+KE++A++SG VF+R+KFESGV Sbjct: 121 DEAALFAGDLFRMYQRFAELNGWKVEVLSASEGEVGGFKEVIASVSGENVFARLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTSAATVAVLP+A ++D++I D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPATESGGRIHTSAATVAVLPQAEDVDIEINESDLRIDTFRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTGI+V E+SQH+N+ RAM++LRAR+YD ER R A+ER+ R++Q+GSGD Sbjct: 241 AVRITHEPTGIVVAVQDERSQHKNKARAMQLLRARIYDEERARAASERTEARRVQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRI LTLYKLE ++ G + +++ L+ +QA ++ + Sbjct: 301 RSERIRTYNFPQGRVTDHRIGLTLYKLEQIIAGEGLAEVVEALILDYQATLLAAEE 356 >gi|89256990|ref|YP_514352.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica LVS] gi|115315350|ref|YP_764073.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica OSU18] gi|134301375|ref|YP_001121343.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis WY96-3418] gi|156503190|ref|YP_001429255.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica FTNF002-00] gi|167009371|ref|ZP_02274302.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica FSC200] gi|254368245|ref|ZP_04984265.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica 257] gi|290954490|ref|ZP_06559111.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica URFT1] gi|295312095|ref|ZP_06802908.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica URFT1] gi|119361542|sp|Q2A1Q0|RF1_FRATH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361543|sp|Q0BKE8|RF1_FRATO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223558|sp|A7NE96|RF1_FRATF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223560|sp|A4IWC1|RF1_FRATW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|89144821|emb|CAJ80160.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica LVS] gi|115130249|gb|ABI83436.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica OSU18] gi|134049152|gb|ABO46223.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis WY96-3418] gi|134254055|gb|EBA53149.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica 257] gi|156253793|gb|ABU62299.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica FTNF002-00] Length = 361 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|15602420|ref|NP_245492.1| peptide chain release factor 1 [Pasteurella multocida subsp. multocida str. Pm70] gi|13431785|sp|P57852|RF1_PASMU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|12720821|gb|AAK02639.1| PrfA [Pasteurella multocida subsp. multocida str. Pm70] Length = 360 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R E+E + E+ + D + ++EYA + ++ + ++Q Sbjct: 1 MKPTIISKLESLKERHEELEALLGEASVISDQDKFRAYSKEYAQLEDVVKCFARWNQLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D ++++AQ E+ A + EI ++E ++ LLLPKD +D+ +C LEIR Sbjct: 61 NMEEAQLLL----DDPSMKEMAQEEIEACKTEIEQVEQQLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++WKVEVLS+++++ GGYKEI+ ++G GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWKVEVLSANESEQGGYKEIIVKVNGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESELPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R ++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEKERQEQAQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|207721782|ref|YP_002252220.1| peptide chain release factor 1 (rf-1) protein [Ralstonia solanacearum MolK2] gi|206586946|emb|CAQ17530.1| peptide chain release factor 1 (rf-1) protein [Ralstonia solanacearum MolK2] Length = 356 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 174/360 (48%), Positives = 247/360 (68%), Gaps = 11/360 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ L R EI ++ ++D Y KLT E+A + P++++ +++ Q + + Sbjct: 1 MLS--KLDQLAERTIEINALLAREDATANLDQYRKLTREHAELEPVVAQYAVWKQAENDV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D +++ A+ E+ + LE E+ LLLPKD +D ++ LEIRAG Sbjct: 59 ATAQELLA----DPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIRAG 114 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+KFE Sbjct: 115 TGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFE 174 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH+N Sbjct: 175 SGGHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHIN 234 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK I Sbjct: 235 KTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLI 294 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA+ + + E Sbjct: 295 GSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDALMDGDLDELLGTLAAEHQAEQLAALGE 354 >gi|152979102|ref|YP_001344731.1| peptide chain release factor 1 [Actinobacillus succinogenes 130Z] gi|150840825|gb|ABR74796.1| peptide chain release factor 1 [Actinobacillus succinogenes 130Z] Length = 374 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ K ++EYA + ++ + + + Q Sbjct: 15 MKDSIISKLDSLAERHEELQALLGDASVINDQDKFRTYSKEYAQLEEVVGAFTRWKKLNQ 74 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +D ++ +D +++D+AQ E+ + EI +LE ++ LLLPKD D+ + LEIR Sbjct: 75 DIEDAQLLL----NDPDMKDMAQEEIEQNKAEIEQLEQQLQILLLPKDPHDEYNAYLEIR 130 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W++E LS+++++ GGYKEI+ + G GV+ ++K Sbjct: 131 AGTGGDEAGIFAGDLFRMYSRYAESKRWRIETLSANESEQGGYKEIIVKVIGEGVYGQLK 190 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D+RIDT R+SG+GGQH Sbjct: 191 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPETELPEINPTDLRIDTYRSSGAGGQH 250 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E+++ A E++ R+ Sbjct: 251 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIAQAEQEKQAREQADTRRN 310 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 311 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 370 Query: 356 SE 357 SE Sbjct: 371 SE 372 >gi|222529063|ref|YP_002572945.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM 6725] gi|312622681|ref|YP_004024294.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis 2002] gi|254790859|sp|B9MR68|RF1_ANATD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|222455910|gb|ACM60172.1| peptide chain release factor 1 [Caldicellulosiruptor bescii DSM 6725] gi|312203148|gb|ADQ46475.1| peptide chain release factor 1 [Caldicellulosiruptor kronotskyensis 2002] Length = 355 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 247/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E ++S+ + + KL +E++ + PI+ K Y + ++ Sbjct: 1 MIEKLQVIEEKYLELEKKISDPEIISQPQEWQKLMKEHSNLQPIVEKFREYKRILDTIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + L + E+ +++ +E ++ LLLPKD +D+K+ I+EIRAG G Sbjct: 61 AEELL-DTDLDEDFEKLVKEELNRAKEQKEIVETQLKILLLPKDPNDEKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA + WKVEV+S+S++D G+KE++ ISG+G +SR+K+ESG Sbjct: 120 GEEAALFAAELFRMYSRYAERKNWKVEVMSTSESDLDGFKEVIFMISGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPE +++V+I ED+ IDT RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESGGRIHTSTATVAVLPEVEDVEVEIREEDLEIDTFRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V E+SQH NR RAMK+LRARLYD + E + R+ Q+G+G Sbjct: 240 SAVRIVHKPTGIVVTCQDERSQHANRDRAMKILRARLYDYYQSIQQKEIESQRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTLYKLE +L G +D+II+ L+T Q + + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLYKLEQILDGELDEIIDALITHFQTERLKEIG 355 >gi|148546007|ref|YP_001266109.1| peptide chain release factor 1 [Pseudomonas putida F1] gi|166223590|sp|A5VYG5|RF1_PSEP1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148510065|gb|ABQ76925.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudomonas putida F1] Length = 360 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+ + + + + Sbjct: 1 MKASLLNKLEILQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVYAAYKEWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDLREMALEEVREAKEQLLTLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|260767753|ref|ZP_05876688.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972] gi|260617262|gb|EEX42446.1| peptide chain release factor 1 [Vibrio furnissii CIP 102972] gi|315179416|gb|ADT86330.1| peptide chain release factor 1 [Vibrio furnissii NCTC 11218] Length = 362 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + I Y Q + Sbjct: 1 MKASILVKLESLVERYEEVQHLLGDPAVIGDQDKFRALSKEYSQLEEITHCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ + EI L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLSAAEEMAKE--DDAEMREMAQDEIKVAKAEIERLSDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEVPEAEIPEIRTADLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ A S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAKAEEEKRAAAISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +++P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLSEVMEGDLQSLVDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|56707338|ref|YP_169234.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis SCHU S4] gi|110669808|ref|YP_666365.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis FSC198] gi|224456401|ref|ZP_03664874.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370015|ref|ZP_04986022.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis FSC033] gi|254874173|ref|ZP_05246883.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|61214577|sp|Q5NIA8|RF1_FRATT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361541|sp|Q14JR1|RF1_FRAT1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|54112995|gb|AAV29131.1| NT02FT0305 [synthetic construct] gi|56603830|emb|CAG44801.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis SCHU S4] gi|110320141|emb|CAL08184.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis FSC198] gi|151568260|gb|EDN33914.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis FSC033] gi|254840172|gb|EET18608.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis MA00-2987] gi|282158463|gb|ADA77854.1| peptide chain release factor 1 [Francisella tularensis subsp. tularensis NE061598] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKKYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|118498113|ref|YP_899163.1| peptide chain release factor 1 [Francisella tularensis subsp. novicida U112] gi|194323340|ref|ZP_03057124.1| peptide chain release factor 1 [Francisella tularensis subsp. novicida FTE] gi|166223559|sp|A0Q844|RF1_FRATN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118424019|gb|ABK90409.1| protein chain release factor A [Francisella novicida U112] gi|194322704|gb|EDX20184.1| peptide chain release factor 1 [Francisella tularensis subsp. novicida FTE] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMLMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|33152002|ref|NP_873355.1| peptide chain release factor 1 [Haemophilus ducreyi 35000HP] gi|46576749|sp|Q7VMV9|RF1_HAEDU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33148224|gb|AAP95744.1| peptide chain release factor 1 (RF-1) [Haemophilus ducreyi 35000HP] Length = 360 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ + D + ++EYA + +++ + + + Sbjct: 1 MKASIIHKLDCLSERHEELQALLGDASVIADQDKFRAYSKEYAQLEEVVATFNRWKKLNS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D +++++A E+ + EI LE + LLLPKD +D+ + LEIR Sbjct: 61 DIEEAELLL----DDPDMKEMATEEITQNKAEIECLEQHLQILLLPKDPNDEYNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDL+RMY RYA ++W++E +S+++++ GGYKEI+ ISG V+ ++K Sbjct: 117 AGTGGDEAGIFAGDLYRMYSRYAESKRWRIEEMSANESEQGGYKEIIVKISGESVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V E+SQH+N+ +A+ VL +R+ VE++R A ++ R+ Sbjct: 237 VNTTDSAVRITHLPTGIVVECQDERSQHKNKAKALAVLASRIVQVEQERQAMAQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 297 LLGTGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAAL 356 Query: 356 SE 357 S+ Sbjct: 357 SD 358 >gi|207744458|ref|YP_002260850.1| peptide chain release factor 1 (rf-1) protein [Ralstonia solanacearum IPO1609] gi|206595864|emb|CAQ62791.1| peptide chain release factor 1 (rf-1) protein [Ralstonia solanacearum IPO1609] Length = 356 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 174/360 (48%), Positives = 247/360 (68%), Gaps = 11/360 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ L R EI ++ ++D Y KLT E+A + P++++ +++ Q + + Sbjct: 1 MLS--KLDQLAERTIEINALLAREDATANLDQYRKLTREHAELEPVVTQYAVWKQAENDV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D +++ A+ E+ + LE E+ LLLPKD +D ++ LEIRAG Sbjct: 59 ATAQELLA----DPDMKAFAEDELRVARDRMTALEAELQRLLLPKDPNDHRNIFLEIRAG 114 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+KFE Sbjct: 115 TGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFE 174 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH+N Sbjct: 175 SGGHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHIN 234 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK I Sbjct: 235 KTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLI 294 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA+ + + E Sbjct: 295 GSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDALMDGDLDELLGTLAAEHQAEQLAALGE 354 >gi|294669176|ref|ZP_06734256.1| peptide chain release factor 1 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291308808|gb|EFE50051.1| peptide chain release factor 1 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 358 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R E+ + + Y KLT E+A I+P++ Y Q + Sbjct: 1 MKPTIIEKLQQLSDRLEEVTALLGSPEATSDMGNYRKLTREHAEITPVVETFHQYMQAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD E++D A E+ A + +I L+ E+ LLLPKD DDDK+ +E+R Sbjct: 61 DMAEAQEML----SDPEMKDFATEEIEAAKAKIDTLDTELQKLLLPKDADDDKNIFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA +W+VE++S+++++ GGYKE++A I G G +SR+K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRYAERNRWQVEIVSANESELGGYKEVIARIVGLGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E D+++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEADELEDIELNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V +SQH N+ +AMKVL ARL D +++ + +A RK Sbjct: 237 INKTDSAVRITHLPTGMVVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLHKLDFVMDGDMEEITNALIAEHQAELLAAM 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|284039842|ref|YP_003389772.1| peptide chain release factor 1 [Spirosoma linguale DSM 74] gi|283819135|gb|ADB40973.1| peptide chain release factor 1 [Spirosoma linguale DSM 74] Length = 357 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 158/356 (44%), Positives = 234/356 (65%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 Q+ ++ RF E+ ++ + +V ++KL++EY + I+ + Y Q +E + Sbjct: 1 MLDQLEAIRERFNEVAQQIVQPEAVSDQKRFMKLSKEYKDLEKIVVQYQAYQQLLEEIDN 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D + R++A+ E+ + LE + +L+PKD +D K+ ILEIR GTG Sbjct: 61 AKKIIA-TEKDEDFREMAKGELDELLPRRETLEETLKEMLMPKDPNDSKNVILEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GD+FRMY+R+ W++ ++ ++ GGYKEI+ I G V+ ++KFESG Sbjct: 120 GDEAAIFAGDIFRMYQRFCEKMGWRMSLVDFTEGTSGGYKEIITEIEGEDVYGKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTSAA+VAVLPEA E+DV+I + DIR DT +SG+GGQ VNTT Sbjct: 180 VHRVQRVPATETQGRIHTSAASVAVLPEAEEVDVEINMNDIRKDTFCSSGAGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V E+SQ +N +A+ VLR+RLY++E ++ + ++ RK +GSG Sbjct: 240 SAVRLTHIPTGLVVQCQDERSQLKNFDKALTVLRSRLYEIELQKHNDAIASQRKTMVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS++IRTYN+ Q R+TDHRI LT+Y L V+ G I + I L A A+ + + Sbjct: 300 DRSDKIRTYNYPQSRVTDHRIGLTVYNLPSVMDGGIGEFIEQLRIAENAERLKEGA 355 >gi|170746587|ref|YP_001752847.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM 2831] gi|226739115|sp|B1M766|RF1_METRJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|170653109|gb|ACB22164.1| peptide chain release factor 1 [Methylobacterium radiotolerans JCM 2831] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 180/359 (50%), Positives = 250/359 (69%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M+ +++ + R + +++ + ++L+ E + + P+++ I Y + Sbjct: 1 MIPFPTERLDAILARHDIVTAQLASGEIDPETVVQLSRELSDLDPVVAAIRAYRAALENL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I + +D E+R LA E + + LLLPKD D+KS ILE+RAG Sbjct: 61 AGVEALIDEPGTDPEMRALAAEEKPEALAALETAHRALQLLLLPKDAADEKSAILEVRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY +YA + W+VEV+S S+ GG++E+VA + GRGVF+R+KFE Sbjct: 121 TGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGFREVVAEVKGRGVFARLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+D+ + D++IDTMRA G+GGQHVN Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDIHVNDADLKIDTMRAQGAGGQHVNK 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITH+PTGI+V E+SQH+NR RAM +LRARLY+ ER + R+A+RK Q+G Sbjct: 241 TESAIRITHLPTGIVVFVQEERSQHKNRARAMALLRARLYEAERNAKDSARAADRKAQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE V+ G +D++++ L+T HQA+++ + Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAGTALDEVVDALITEHQAELLAAEG 359 >gi|16273461|ref|NP_439710.1| peptide chain release factor 1 [Haemophilus influenzae Rd KW20] gi|145631803|ref|ZP_01787563.1| peptide chain release factor 1 [Haemophilus influenzae R3021] gi|145637543|ref|ZP_01793200.1| peptide chain release factor 1 [Haemophilus influenzae PittHH] gi|145642039|ref|ZP_01797610.1| peptide chain release factor 1 [Haemophilus influenzae R3021] gi|148826083|ref|YP_001290836.1| peptide chain release factor 1 [Haemophilus influenzae PittEE] gi|229844233|ref|ZP_04464374.1| peptide chain release factor 1 [Haemophilus influenzae 6P18H1] gi|229847123|ref|ZP_04467228.1| peptide chain release factor 1 [Haemophilus influenzae 7P49H1] gi|260580342|ref|ZP_05848171.1| peptide chain release factor 1 [Haemophilus influenzae RdAW] gi|260583304|ref|ZP_05851079.1| peptide chain release factor 1 [Haemophilus influenzae NT127] gi|319897179|ref|YP_004135374.1| peptide chain release factor rf-1 [Haemophilus influenzae F3031] gi|1574404|gb|AAC23209.1| peptide chain release factor 1 (prfA) [Haemophilus influenzae Rd KW20] gi|144982593|gb|EDJ90143.1| peptide chain release factor 1 [Haemophilus influenzae R3021] gi|145269229|gb|EDK09175.1| peptide chain release factor 1 [Haemophilus influenzae PittHH] gi|145273219|gb|EDK13094.1| peptide chain release factor 1 [Haemophilus influenzae 22.4-21] gi|148716243|gb|ABQ98453.1| peptide chain release factor 1 [Haemophilus influenzae PittEE] gi|229809952|gb|EEP45673.1| peptide chain release factor 1 [Haemophilus influenzae 7P49H1] gi|229813227|gb|EEP48915.1| peptide chain release factor 1 [Haemophilus influenzae 6P18H1] gi|260093019|gb|EEW76953.1| peptide chain release factor 1 [Haemophilus influenzae RdAW] gi|260093664|gb|EEW77577.1| peptide chain release factor 1 [Haemophilus influenzae NT127] gi|301170298|emb|CBW29904.1| peptide chain release factor RF-1 [Haemophilus influenzae 10810] gi|317432683|emb|CBY81046.1| peptide chain release factor RF-1 [Haemophilus influenzae F3031] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ ++G GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVTGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|332678840|gb|AEE87969.1| Peptide chain release factor 1 [Francisella cf. novicida Fx1] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQTAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|329848654|ref|ZP_08263682.1| peptide chain release factor 1 [Asticcacaulis biprosthecum C19] gi|328843717|gb|EGF93286.1| peptide chain release factor 1 [Asticcacaulis biprosthecum C19] Length = 358 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 261/357 (73%), Gaps = 2/357 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ + +RF IE RM + ++L++E+A I P+ + + + + Sbjct: 1 MIHLPQAKLDQVMDRFRMIEARMESTTDGAEIVRLSKEHAEIKPVCDAVERLLKARNQVP 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I D ++ LA+ E+ A+++ + +LE + LL PKD D++ S ILE+RAGT Sbjct: 61 ELEEMIAL--GDPDLAPLAEEELGALKESLPDLERGVALLLAPKDKDENASAILELRAGT 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY RYAA + WKVEV S S+ + GG+KEI+A+++G GVF ++KFES Sbjct: 119 GGDEAALFAGDLFRMYSRYAAAQGWKVEVDSLSEGEAGGFKEIIASVTGEGVFGKLKFES 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEA GR+HTSAATVAVLPEA +++++I +D+RIDT R+SG+GGQHVN T Sbjct: 179 GVHRVQRVPATEAGGRIHTSAATVAVLPEAEDVEIEIHDKDLRIDTYRSSGAGGQHVNKT 238 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITH+PTGI+VTSSEKSQHQNR AM+ L+AR+YD++R+ + RS +RK Q+GSG Sbjct: 239 DSAVRITHLPTGIVVTSSEKSQHQNRAIAMRNLKARMYDMQRQALDTARSDSRKSQVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ QGR++DHRINLTLY L ++G + +IN L+ QA+ + E Sbjct: 299 DRSERIRTYNYPQGRVSDHRINLTLYNLPQFMEGDMGQMINALIAEDQAERLAQLEE 355 >gi|26987469|ref|NP_742894.1| peptide chain release factor 1 [Pseudomonas putida KT2440] gi|32171521|sp|Q88PW5|RF1_PSEPK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|24982133|gb|AAN66358.1|AE016264_2 peptide chain release factor 1 [Pseudomonas putida KT2440] Length = 360 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+ + + + + Sbjct: 1 MKASLLNKLEILQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVYAAYKEWRKVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDLREMAVEEVREAKEQLLTLEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNALASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|194290876|ref|YP_002006783.1| peptide chain release factor 1 [Cupriavidus taiwanensis LMG 19424] gi|238692779|sp|B3R722|RF1_CUPTR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|193224711|emb|CAQ70722.1| peptide chain release factor RF-1 [Cupriavidus taiwanensis LMG 19424] Length = 360 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++ ++D Y KL+ E+A +SP+ + S Y Q + Sbjct: 1 MKASMLAKLDQLAERLDEVNALLAREDATANIDQYRKLSREHAELSPVAEQYSQYRQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++D A E+ A + L+ + LLLPKD +DD++ +LEIR Sbjct: 61 DLATAQALL----DDPEMKDFAADEIAAARDRLEALQASLQRLLLPKDPNDDRNLLLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RYA ++W+VEV+S S++D GGYKE++ I+G FSR+K Sbjct: 117 AGTGGEESALFAADLLRMYTRYAERQRWQVEVMSESESDLGGYKEVIIRIAGDAAFSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PEA E+ +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEADEVGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V ++SQH+N+ +AMKVL AR+ D++ + ++ R+ Sbjct: 237 VNKTDSAVRLTHLPTGIVVECQDDRSQHRNKDKAMKVLAARIKDMQTRAAQAREASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D++++ L HQA + + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDMIMDGDMDELLSALSAEHQADQLAAL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|254369840|ref|ZP_04985850.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica FSC022] gi|157122799|gb|EDO66928.1| peptide chain release factor 1 [Francisella tularensis subsp. holarctica FSC022] Length = 361 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEAGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQIFLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQR+PATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRIPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|300702903|ref|YP_003744504.1| peptide chain release factor rf-1 [Ralstonia solanacearum CFBP2957] gi|299070565|emb|CBJ41860.1| peptide chain release factor RF-1 [Ralstonia solanacearum CFBP2957] Length = 356 Score = 291 bits (744), Expect = 1e-76, Method: Composition-based stats. Identities = 175/360 (48%), Positives = 248/360 (68%), Gaps = 11/360 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ L R EI ++ ++D Y KLT E+A + P++++ + + Q + + Sbjct: 1 MLS--KLDQLAERTVEINALLAREDATANLDQYRKLTREHAELEPVVAQYATWKQAEDDV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D +++ A+ E+ A + + LE E+ LLLPKD +D ++ LEIRAG Sbjct: 59 ATAQELLA----DPDMKAFAEDELRAARERMTALEAELQRLLLPKDPNDHRNIFLEIRAG 114 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++A + G G +SR+KFE Sbjct: 115 TGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIARLVGEGAYSRLKFE 174 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH+N Sbjct: 175 SGGHRVQRVPATEAQGRIHTSACTVAVMPEADALADIQINPADLRIDTFRASGAGGQHIN 234 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRITH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK I Sbjct: 235 KTDSAVRITHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLI 294 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GSGDRS+RIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA+ + + E Sbjct: 295 GSGDRSDRIRTYNFPQGRVTDHRINLTLYKIDALMDGDLDELLGTLAAEHQAEQLAALGE 354 >gi|150015294|ref|YP_001307548.1| peptide chain release factor 1 [Clostridium beijerinckii NCIMB 8052] gi|189039964|sp|A6LQG2|RF1_CLOB8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|149901759|gb|ABR32592.1| peptide chain release factor 1 [Clostridium beijerinckii NCIMB 8052] Length = 360 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 250/357 (70%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E+A + I++ Y + ++ + Sbjct: 1 MLLDKLEFIENKYDELSVKISDPSIMQNQNEWRKLCKEHADLEVIVNSYREYKKVVEDLK 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ SD E+R++ E+ + +LE EI LLLPKD +DDK+ +EIR G Sbjct: 61 ANKEMLS-GESDKEMREMLNEEITDLTNREEQLETEIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W VE++S ++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGEEAALFAYNLFRMYTRYAETQRWGVEIMSLNETDLGGFKEVVFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS ATVAVLPE ++++++ +D+RID RASG+GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTATVAVLPEVDDVEIEVADKDVRIDVFRASGNGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQ +N+ +AMKVL++RLY+ + A + +RK Q+G+ Sbjct: 240 DSAVRITHLPTGLVVSCQDEKSQLKNKEKAMKVLKSRLYEQAERERAQGIAEDRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGRITDHRI LTLYKL+ L G ID++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNYPQGRITDHRIGLTLYKLDTFLGGDIDEMINALITADQAEKMKLMG 356 >gi|117926919|ref|YP_867536.1| peptide chain release factor 1 [Magnetococcus sp. MC-1] gi|226739111|sp|A0LDT7|RF1_MAGSM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|117610675|gb|ABK46130.1| bacterial peptide chain release factor 1 (bRF-1) [Magnetococcus sp. MC-1] Length = 361 Score = 290 bits (743), Expect = 1e-76, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 251/358 (70%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 +++ L +R AE+ +++ +V + ++E++ + P+++ + Q+ Sbjct: 1 MAIEEKLESLTSRHAELSAHLADPTTVSDSKRFAAYSKEFSDLEPVVAAWQAHLAILQQL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D+E+R +A+ E ++ ++ + + ++ +LLPKD +DDK+ ILEIRAG Sbjct: 61 AETDEMLAEAGDDAEMRQMAREERETLKNKLEQSQKHLHLMLLPKDPNDDKNVILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALFV DLFRMY R+A ++ W++E+LSSS D GGYKE++A + G+G + +K+E Sbjct: 121 TGGEEAALFVSDLFRMYGRFAEIKGWRIEMLSSSATDLGGYKELIAMVQGKGAYMGLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQR+P TE GR+HTSA TVA+LPEA E+++ I +D+RID R+SG GGQ VNT Sbjct: 181 SGVHRVQRIPVTETGGRIHTSAVTVAILPEADEVELHIEDKDLRIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V EKSQH+N+ +AMKVL+ARL D +++ ++R+ RK Q+G Sbjct: 241 TDSAVRITHLPTGLVVICQDEKSQHKNKAKAMKVLQARLLDAQQQAADSQRAEARKGQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF Q R+TDHRINLTL+KL+ VLQG + ++++ L QA + Sbjct: 301 SGDRSERIRTYNFPQSRVTDHRINLTLHKLDQVLQGGLAEVVDALTAHDQASKLAHLG 358 >gi|319776412|ref|YP_004138900.1| peptide chain release factor RF-1 [Haemophilus influenzae F3047] gi|329123576|ref|ZP_08252138.1| peptide chain release factor RF1 [Haemophilus aegyptius ATCC 11116] gi|317451003|emb|CBY87233.1| peptide chain release factor RF-1 [Haemophilus influenzae F3047] gi|327470318|gb|EGF15778.1| peptide chain release factor RF1 [Haemophilus aegyptius ATCC 11116] Length = 361 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ ++G GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKELIVKVTGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|23100453|ref|NP_693920.1| peptide chain release factor RF-1 [Oceanobacillus iheyensis HTE831] gi|32171555|sp|Q8EM60|RF1_OCEIH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|22778686|dbj|BAC14954.1| peptide chain release factor RF-1 [Oceanobacillus iheyensis HTE831] Length = 356 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 160/357 (44%), Positives = 237/357 (66%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++R+ ++ +S+ ++ KL ++E + + ++ Y + ++ D Sbjct: 1 MLDRLQSLEDRYNKLNEMLSDPEVINDSKKLREYSKEQSGLEDVVQAYREYKEVTEQLND 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D E+ ++ + E+ + ELE+ + LLLPKD +DDK+ +EIR G Sbjct: 61 AKEMMEDKLDD-EMYEMVKAEIAELNGRKEELESSMKILLLPKDPNDDKNVFMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RYA + WK++V+ +S GGYKE++ I+G V+S++K+E+G Sbjct: 120 GDEAALFAGDLYRMYSRYAEHQGWKIDVMEASSTGVGGYKEVIFMINGSDVYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E++V++ +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEVEVHDKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V+ EKSQ +N+ +AMKVLRAR+YD ++ E NRK +GSG Sbjct: 240 SAVRLTHVPTGIVVSIQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDENRKSAVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LT+ KL+ ++QG +D+ I+ L+ Q + E Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQIMQGKLDEFIDALVMEEQTNKLEQIGE 356 >gi|148826783|ref|YP_001291536.1| peptide chain release factor 1 [Haemophilus influenzae PittGG] gi|148718025|gb|ABQ99152.1| peptide chain release factor 1 [Haemophilus influenzae PittGG] Length = 361 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|255525833|ref|ZP_05392762.1| peptide chain release factor 1 [Clostridium carboxidivorans P7] gi|255510476|gb|EET86787.1| peptide chain release factor 1 [Clostridium carboxidivorans P7] Length = 358 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 170/356 (47%), Positives = 244/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + ++ K Y + ++E + Sbjct: 1 MLERLEFIENKYEELSAKISDPSIMADQKEWQKLCKEHAELETLVIKYRQYRKAEEELES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D +D ++RD+ Q ++ +E + E E+ LLLPKD +DDK+ +EIR G G Sbjct: 61 NKEMLKDE-TDKDMRDMIQEDIKELEASMDEARQELRILLLPKDPNDDKNVFVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KEIV I G G +SR+K+ESG Sbjct: 120 GEEAALFAANLTRMYTRYAERKGWKVETISLNATDIGGFKEIVFMIKGAGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D+ I DIRID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDLVINANDIRIDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL++RL++ + + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQLKNKEKAMKVLKSRLFERAEAERSAGIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI LTLYKL+ L G ID++I+ L+T QA+ + + Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGLTLYKLDSYLDGDIDEVIDALITTDQAEKMKAMG 355 >gi|332993699|gb|AEF03754.1| peptide chain release factor 1 [Alteromonas sp. SN2] Length = 361 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 259/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ +L RF E++ + + + D + L++E++ + ++ + Y Q ++ Sbjct: 1 MKDSVVRKLENLVERFEEVQALLGDPQVIGNQDKFRNLSKEFSQLESVVGGFNAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + D+E+R++AQ E+ + +I LE E+ LLLPKD +DD +C LE+R Sbjct: 61 NLDSANEMLKE--DDAEMREMAQEELKIAKADIERLETELQVLLLPKDPNDDSNCFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA + W+VE++++++ + GGYKE+VA ISG GV+ +K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAETKGWRVELINANEGEHGGYKEVVANISGDGVYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E + +DI D+RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPDTESQGRIHTSACTVAVLPEIPESEAIDINPADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+G++V E+SQH+NR +AM VL+ARL ++E ++ A E ++ RK Sbjct: 239 VNKTDSAIRITHLPSGLVVECQDERSQHKNRAKAMSVLQARLNNIEEEKRAAEEASTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLT+Y+L+ V++G + +++P++ HQA ++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTIYRLDEVIEGDLKQLLDPIMQEHQADLLASL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|37679115|ref|NP_933724.1| peptide chain release factor 1 [Vibrio vulnificus YJ016] gi|320157139|ref|YP_004189518.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O] gi|37197857|dbj|BAC93695.1| protein chain release factor A [Vibrio vulnificus YJ016] gi|319932451|gb|ADV87315.1| peptide chain release factor 1 [Vibrio vulnificus MO6-24/O] Length = 363 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + + Y Q ++ Sbjct: 2 MKASILTKLEMLVERYEEVQHLLGDPGVIGDQDKFRALSKEYSQLEEVTKCFTAYKQAQE 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I +L E+ LLLPKD +DD++C LEIR Sbjct: 62 DLVAAEEMAKE--DDAEMREMAQEEIKAAKVAIEDLAAELQILLLPKDPNDDRNCFLEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A R W++EV+S+++ + GGYKE++A ++G G + +K Sbjct: 120 AGAGGDEAGIFAGDLFRMYSKFAEKRGWRIEVMSANEAEHGGYKEMIAKVNGDGAYGFLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA++PE E + +I D++IDT R+SG+GGQH Sbjct: 180 FESGGHRVQRVPATESQGRVHTSACTVAIMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 240 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEAKRAAEVSDTRRN 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 300 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLSEVMEGDLQSLIDPVIQEHQADQLAAL 359 Query: 356 SE 357 +E Sbjct: 360 AE 361 >gi|254000219|ref|YP_003052282.1| peptide chain release factor 1 [Methylovorus sp. SIP3-4] gi|253986898|gb|ACT51755.1| peptide chain release factor 1 [Methylovorus sp. SIP3-4] Length = 360 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L R E+ +S +D Y K++ E+A I+PI+ + Y+Q + Sbjct: 1 MKPSMLKKLATLSERLDELNRLLSSEDATSDMDNYRKISREHAEITPIVEQYRAYEQCEN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ H ++ D E++ AQ E+ A + + E+ + LLLPKD +D+++ LEIR Sbjct: 61 DLKEAHAMLA----DPEMKAFAQEEIEAGKARLEEIAMALQKLLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDLFRMY RYA ++WKVEV+S+S+++ GGYKEI+A I G G +S++K Sbjct: 117 AGTGGDESALFAGDLFRMYSRYAERQRWKVEVVSASESEVGGYKEIIAKIEGFGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVLPE E DV I DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPETETQGRIHTSACTVAVLPEVDEVSDVTISPADIRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH PTGI+V +SQH N+ +AM+VL AR+ + ++ ++ R+ Sbjct: 237 INKTDSAVRITHFPTGIVVECQDGRSQHSNKAQAMQVLAARIKAKQVNEQQSKIASERRS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYK++ + +G +D++IN L HQA ++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKIDAITEGDMDELINALANEHQADLLATL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|20806672|ref|NP_621843.1| peptide chain release factor 1 [Thermoanaerobacter tengcongensis MB4] gi|22096035|sp|Q8RD98|RF1_THETN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|20515122|gb|AAM23447.1| Protein chain release factor A [Thermoanaerobacter tengcongensis MB4] Length = 356 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 254/355 (71%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++R+ E+ ++S+ + + K +E+AAI I+ K Y + +E + Sbjct: 1 MIEKLQAIEDRYVELSQKISDPNVISNVEEWRKYVKEHAAIEDIVLKYREYKKVLEEIKA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E++++A+ E+ +E++ +L EI LLLPKD +D+K+ I+EIRAG G Sbjct: 61 TEELLS--SQDEELKEMAEEELSQLEEKKEKLMEEIKILLLPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++S++ D GG+KE++ +ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAYDLFRMYTMYAEKKGWKVEIMSANKTDIGGFKEVIFSISGKGAYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TEA GR+HTS ATVAVLPEA E+DV+I DI+ID R+SG GGQ VNTTD Sbjct: 179 VHRVQRIPTTEAGGRIHTSTATVAVLPEAEEVDVEINPNDIKIDVFRSSGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ K E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALKEQQREIAEARKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +RSERIRTYNF QGR+TDHRI LTLYKL+ VL G +D+II+ L+ QA+ + + Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYKLQEVLDGELDEIIDALILNDQAEKLKNM 353 >gi|254419936|ref|ZP_05033660.1| peptide chain release factor 1 [Brevundimonas sp. BAL3] gi|196186113|gb|EDX81089.1| peptide chain release factor 1 [Brevundimonas sp. BAL3] Length = 355 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 186/353 (52%), Positives = 253/353 (71%), Gaps = 4/353 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF E+E RM + ++L++E+A + P+ + + + E DL Sbjct: 3 LPQARLDQVLDRFHEVEARMGAATDGVEIVRLSKEHAELKPVADAVQGLARLRAEMADLE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+ +AQ E+ + + + ++E ++ LL P+D D++ S +LE+RAGTGG Sbjct: 63 VMAA----DPEMAAMAQDELRDLTERLPQMERDVALLLAPRDADENASAVLEVRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYAA R W++E+ S+++ D GGYKEI+AT++G GVF R+KFESGVH Sbjct: 119 EAALFAGDLFRMYSRYAATRGWRIELDSATEGDAGGYKEIIATVTGDGVFGRLKFESGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSAATVAVLPE +++++I +DIRIDT RASGSGGQHVN TDSA Sbjct: 179 RVQRVPTTEAGGRIHTSAATVAVLPEVEDVEIEILEKDIRIDTFRASGSGGQHVNKTDSA 238 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTGI+ TSSEKSQH NR +AMK LR RLYD++R+ R+ +RK Q+GSGDRS Sbjct: 239 VRITHLPTGIVATSSEKSQHVNRDKAMKNLRVRLYDMQRQAKDLARADSRKSQVGSGDRS 298 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF QGR+TDHRI LTL+ L +L+G +D ++N L+ QA + Sbjct: 299 ERIRTYNFPQGRVTDHRIGLTLHSLPQILEGDLDPMLNALIAEDQAARLADLE 351 >gi|169333846|ref|ZP_02861039.1| hypothetical protein ANASTE_00232 [Anaerofustis stercorihominis DSM 17244] gi|169259411|gb|EDS73377.1| hypothetical protein ANASTE_00232 [Anaerofustis stercorihominis DSM 17244] Length = 355 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 170/352 (48%), Positives = 249/352 (70%), Gaps = 5/352 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ RF E+ +S ++ Y +L +E++ + PI+ Y ++ + Sbjct: 1 MLDKLKSIEKRFNEVSEDISNPDIINNHELYTELIKEHSHLEPIVIAYKKYADVMEQLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + D + +++ ++ ++ ++ LE EI LL+PKD +DDK+ I+EIRAG G Sbjct: 61 NKEMLNDSDDD-DFKEMILEDISSLNEQKEGLEQEIKILLIPKDPNDDKNVIVEIRAGVG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL RMY RYA +WKVE+LS+++ GGYKE V +I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLLRMYTRYAERNRWKVEMLSTNEIGIGGYKEAVFSIQGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+SGR+HTSA TVAVLPEA +++V+I D+RID R+SG+GGQ VNTTD Sbjct: 180 THRVQRIPDTESSGRIHTSAITVAVLPEAEDVEVNIDPNDLRIDVYRSSGNGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIP+G++V EKSQ +N+ +A+K+L+ARL+++E+++ ++NRK QIGSG Sbjct: 240 SAVRITHIPSGLVVACQDEKSQLKNKDKALKILKARLFEIEQRKQQEAIASNRKSQIGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 DRSERIRTYNF QGR+TDHR+ LTLYKL VL G ID+ I+ L+ Q++ + Sbjct: 300 DRSERIRTYNFPQGRVTDHRVGLTLYKLNDVLDGDIDEFIDTLIVQDQSEQM 351 >gi|167038490|ref|YP_001666068.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116886|ref|YP_004187045.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|238687641|sp|B0K7G6|RF1_THEP3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166857324|gb|ABY95732.1| peptide chain release factor 1 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929977|gb|ADV80662.1| peptide chain release factor 1 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 356 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 253/356 (71%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ ++ ++S+ + + K +E+AAI I+ K Y + ++ + Sbjct: 1 MIDKLQAIEDRYVDLSQKISDPNIISNVAEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ ++D E++++A+ E+ +E++ +L EI LL+PKD +D+K+ I+EIRAG G Sbjct: 61 TKELLS--SNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGSYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DI+ID R+ G GGQ VNTTD Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKIDVFRSGGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + + + Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKLKNMN 354 >gi|241667853|ref|ZP_04755431.1| peptide chain release factor 1 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876395|ref|ZP_05249105.1| peptide chain release factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842416|gb|EET20830.1| peptide chain release factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 361 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + E+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLGEANVISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +++ + ++ + D+E+ ++A+ E+ + + I LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKEAAYEMLNEK--DAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLILEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|254468209|ref|ZP_05081615.1| peptide chain release factor 1 [beta proteobacterium KB13] gi|207087019|gb|EDZ64302.1| peptide chain release factor 1 [beta proteobacterium KB13] Length = 358 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L ++ E+ ++S +D + K+++E+A ++PII S Y + + Sbjct: 1 MKDSMKNKLENLILKYEELNNKLSSEGITSDLDLFKKISKEHADLTPIIETYSGYKKLVK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ SD E+++ AQ E+ + EI E+++ LL+PKD +DDK+ LEIR Sbjct: 61 NIEEAKEML----SDPEMKEFAQEEIDNSKDEIINFESKLQTLLIPKDPNDDKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL+RMY RYA W VEV+SS+++ GGYKEI+A I+G G +S++K Sbjct: 117 AGTGGDESALFAADLYRMYTRYAERNNWNVEVISSNESGLGGYKEIIAKINGDGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVLPEA EI+ DI DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPDTETQGRIHTSACTVAVLPEADEIEDVDINPADIRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH PTGI+V ++SQH+N+ +AM +L A++ D + + ++R++ RK Sbjct: 237 INKTDSAVRITHEPTGIVVECQDDRSQHRNKAQAMSILAAKIKDNQIQAQQSQRASERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGRITDHRINLTLYK+++++ G ++++IN L HQA ++ Sbjct: 297 LIGSGDRSERIRTYNFPQGRITDHRINLTLYKIDFIMDGDLEEMINALSLEHQASLLAEE 356 Query: 356 SE 357 +E Sbjct: 357 NE 358 >gi|254451602|ref|ZP_05065039.1| peptide chain release factor 1 [Octadecabacter antarcticus 238] gi|198266008|gb|EDY90278.1| peptide chain release factor 1 [Octadecabacter antarcticus 238] Length = 344 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 189/346 (54%), Positives = 250/346 (72%), Gaps = 4/346 (1%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + RF +E +M E +A++ ++ EYA + P++ + Y E + ++ Sbjct: 2 QITERFEFLEAQMGEGLGGEAFVAVSREYAELRPVVEVVRTYQDLTAEIEGAEAML---- 57 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD E+++LA++E+ + +++ E + L+PKD D K +LEIR GTGG EAALF Sbjct: 58 SDPEMKELAEMELPQLRQQLPAAEAAVKLALIPKDAADGKPALLEIRPGTGGDEAALFAA 117 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DL RMY+RYA R W E+L S ++ GG KE+ A I+G VF+RMK+ESGVHRVQRVP Sbjct: 118 DLLRMYQRYAENRGWTFEILEESQSELGGIKEVTARIAGNNVFARMKYESGVHRVQRVPE 177 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMRASGSGGQHVNTTDSAVRITH+P Sbjct: 178 TESGGRIHTSAATVAVLPEAEDVDIQINANDIRIDTMRASGSGGQHVNTTDSAVRITHMP 237 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 +GI+VTSSEKSQH+NR AM+VL+ RLYD ER+++ +ERSA+R Q+GSGDRSERIRTYN Sbjct: 238 SGIVVTSSEKSQHRNREIAMQVLKTRLYDAERQKVHDERSADRAAQVGSGDRSERIRTYN 297 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 F QGR+TDHRINLTLYKL+ VLQG +D++I+ L+ QA + Sbjct: 298 FPQGRMTDHRINLTLYKLDAVLQGDLDEVIDGLIQDAQASALAEMG 343 >gi|167038767|ref|YP_001661752.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514] gi|300913648|ref|ZP_07130965.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561] gi|307723337|ref|YP_003903088.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513] gi|238687578|sp|B0K1F7|RF1_THEPX RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166853007|gb|ABY91416.1| peptide chain release factor 1 [Thermoanaerobacter sp. X514] gi|300890333|gb|EFK85478.1| peptide chain release factor 1 [Thermoanaerobacter sp. X561] gi|307580398|gb|ADN53797.1| peptide chain release factor 1 [Thermoanaerobacter sp. X513] Length = 356 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 254/356 (71%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ + + + K +E+AAI I+ K Y + ++ + Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ ++D E++++A+ E+ +E++ +L EI LL+PKD +D+K+ I+EIRAG G Sbjct: 61 TKELLS--SNDEELKEMAEEELSQLEEKKEKLLEEIKILLIPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGSYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DI++D R+ G GGQ VNTTD Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKVDVFRSGGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAETRKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSERIRTYN+ QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + + + Sbjct: 299 ERSERIRTYNYPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKLKNMN 354 >gi|226946181|ref|YP_002801254.1| peptide chain release factor 1 [Azotobacter vinelandii DJ] gi|259585215|sp|C1DEV0|RF1_AZOVD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226721108|gb|ACO80279.1| peptide chain release factor 1 [Azotobacter vinelandii DJ] Length = 360 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 240/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R+ E+ + ++ + + ++EYA + P+++ + + + Sbjct: 1 MKASLLNKLDLLHDRYEELTALLGDAEVIAEQGRFRAYSKEYAEVEPVVAAYREFRKVRD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D SD ++R++A EV + + LE+ + +LLP+D +D ++ LEIR Sbjct: 61 DLAGAQALLKD--SDPDLREMAAEEVAEARERLAGLEDRLQRMLLPRDPNDARNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W++E+LS + + GGYKEI+ + G V+ ++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAEKQGWRIEILSENPGEHGGYKEIITRVEGDNVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I ++R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPAELRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +AM L A+L D + E S R+L Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWLAAKLQDRQDAAAHREISETRRL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+T+HRINLTLY L+ V+ G ++ +I PLL+ +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTEHRINLTLYALDEVMAGGVEAVIEPLLSEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|209516553|ref|ZP_03265407.1| peptide chain release factor 1 [Burkholderia sp. H160] gi|209502994|gb|EEA02996.1| peptide chain release factor 1 [Burkholderia sp. H160] Length = 360 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S ++D Y KLT E+A + P++ + ++ Q + Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITANLDQYRKLTREHAELGPVVDQYGLWRQAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +D+ +RD A+ E+ A + L E+ +LLPKD +DD++ LEIR Sbjct: 61 DAATAQELL----TDASMRDFAEEEIRAARDRMETLGVELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGY+E++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYREVIVRIAGDAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQTHEQQTKEAATRKN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|317133626|ref|YP_004092940.1| peptide chain release factor 1 [Ethanoligenens harbinense YUAN-3] gi|315471605|gb|ADU28209.1| peptide chain release factor 1 [Ethanoligenens harbinense YUAN-3] Length = 356 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 178/354 (50%), Positives = 246/354 (69%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ D +R+ EI R+S+ ++ Y KL E+ ++P++ Y Q +E + Sbjct: 3 EQLEDTCSRYTEIAARLSQPDALADRAAYAKLMREHKQLTPLVEAYHAYQQATADEMEAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ N D+++R LA E+ E LE +++ LLLP+D +D+K+ I+EIRAG GG Sbjct: 63 ELL--ENGDADLRALAAEELADARAEKERLEQKLHLLLLPRDPNDEKNVIIEIRAGAGGE 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +LFRMY YA R WK E L+ ++ + GG KEI + G G +SR+KFESGVH Sbjct: 121 EAALFAAELFRMYSMYAERRGWKAETLNMNETELGGMKEISCMVEGEGAYSRLKFESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTS TVAVLPEA +++VDI ED+RIDT R+SG+GGQH+N T+SA Sbjct: 181 RVQRVPETEAGGRIHTSTVTVAVLPEAEDVEVDIAPEDLRIDTFRSSGAGGQHINKTESA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTG++V E+SQH+NR RAMKVLR+RL D + E + R+ Q+G+GDR Sbjct: 241 IRITHLPTGLVVECQDERSQHKNRDRAMKVLRSRLLDRAQSAQDEEIATTRRTQVGTGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRI LTLY L+ VL G +D++I+PL+TA QA+ + + Sbjct: 301 SERIRTYNFPQGRVTDHRIGLTLYHLDAVLSGNLDEVIDPLITADQAEKLKAGE 354 >gi|254374925|ref|ZP_04990406.1| peptide chain release factor 1 [Francisella novicida GA99-3548] gi|151572644|gb|EDN38298.1| peptide chain release factor 1 [Francisella novicida GA99-3548] Length = 361 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +SE + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLSEVGIISDQNKFRDLSKEYSHLEPIVKAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++Q + ++ + D+E+ ++A+ E+ + I +LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKQAAYEMLNEK--DAELVEMAKEELKLANEAIEKLESELQILLLPRDPNDDANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVISASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLVLEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|146283509|ref|YP_001173662.1| peptide chain release factor 1 [Pseudomonas stutzeri A1501] gi|166223591|sp|A4VPB9|RF1_PSEU5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145571714|gb|ABP80820.1| peptide chain release factor 1 [Pseudomonas stutzeri A1501] Length = 360 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+I + +Q Sbjct: 1 MKASLLNKLDILQDRFEELTALLGDAEVISDQSRFRAYSREYAEVEPVIVAYRQLCKVQQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A+ EV + ++ LE + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAEEEVAEAKAQLETLEANLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE+LS S+ + GGYKE+++ + G V++++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E +I ++RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPAELRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +AM L A+L D + E S RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMAWLAAKLQDRQDAAAHKEISETRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L V+ G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLNEVIGGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|218133361|ref|ZP_03462165.1| hypothetical protein BACPEC_01226 [Bacteroides pectinophilus ATCC 43243] gi|217992234|gb|EEC58238.1| hypothetical protein BACPEC_01226 [Bacteroides pectinophilus ATCC 43243] Length = 363 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 183/354 (51%), Positives = 250/354 (70%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ DL +R+ +I L +S V+ + L +E I+PI++ + Y KQ +D T Sbjct: 10 RLEDLVHRYEDITLELSNPDVVNDQKRFRDLMKEQNDITPIVNAYNEYKSCKQNIEDSLT 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D +D E+++LA+ E+ +K ELENE+ LLLPKD +DDK I+EIRAG GG E Sbjct: 70 ML-DEENDEELKELAKEELNDSKKRAEELENELKILLLPKDPNDDKDIIVEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +LFRMY YA R+WKVEV++S + GG KEI + G+G +S +K+ESGVHR Sbjct: 129 AALFAAELFRMYTHYAESRRWKVEVVNSDETGIGGMKEIEFMVKGQGAYSVLKYESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTS ATVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSAV Sbjct: 189 VQRVPETESGGRIHTSTATVAVMPEAEEVDVQIDEKDIRIDVMRASGNGGQCVNTTDSAV 248 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + R+ QIG+GDRS Sbjct: 249 RLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDMECQKAHDAEADARRSQIGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYNF QGR+TDHRI LTLYKL+ ++ G I +II+ + A QA + E Sbjct: 309 EKIRTYNFPQGRVTDHRIGLTLYKLDKIMDGDIQEIIDACIAADQAAKLAKMGE 362 >gi|296445919|ref|ZP_06887870.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b] gi|296256587|gb|EFH03663.1| peptide chain release factor 1 [Methylosinus trichosporium OB3b] Length = 356 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 188/356 (52%), Positives = 261/356 (73%), Gaps = 1/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + R EI R++ P +++ L+ E A + ++++I + E L Sbjct: 1 MFAQDKLDLILRRHDEIGARLAAGPDAASFVALSRELATLDDVVARIRTWRATSAEIAGL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D + E+R + E+ A E + E E+ LLPKD+ D+K ILE+RAGTGG Sbjct: 61 GEMLADPALEPEMRAFVEGELDAAESALASAEQELKLALLPKDSADEKGVILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFR Y++YA ++ W VE+LS+S+ GGYKEIVA ISGRGV++R+KFESGV Sbjct: 121 DEAALFAGDLFRAYQKYAGVKGWGVEILSASEGALGGYKEIVAEISGRGVYARLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE GR+HTSAATVAVLP+A E+DV I +D++I+TMR+ G+GGQHVN T+S Sbjct: 181 HRVQRVPATETQGRIHTSAATVAVLPQAEEVDVAIDDKDLQIETMRSGGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+P+GI+V E+SQH+NR +AM+VLR+RL+D ER+R+ + R+A+RK Q+GSGD Sbjct: 241 AIRITHLPSGIVVMMQEERSQHRNRAKAMEVLRSRLFDAERQRLDSARAADRKAQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D+I + L T HQAK++ + E Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLDRVIEGELDEIFDALTTDHQAKLLAQSEE 356 >gi|229588283|ref|YP_002870402.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25] gi|259585227|sp|C3KDC6|RF1_PSEFS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229360149|emb|CAY47006.1| peptide chain release factor 1 [Pseudomonas fluorescens SBW25] Length = 360 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + + + + ++EYA + PI++ + + Sbjct: 1 MKASLLNKLDVLQDRFEELTALLGDGEVISDQAKFRAYSKEYAEVEPIVATYKHLTKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVREAKEKLAELEGDLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAVLPE E + ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF+QGR+TDHR+NLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLDEILAGGVDAVIEPLLAEYQADQLAAI 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|289577389|ref|YP_003476016.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9] gi|289527102|gb|ADD01454.1| peptide chain release factor 1 [Thermoanaerobacter italicus Ab9] Length = 356 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 176/356 (49%), Positives = 251/356 (70%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ + + K +E+AAI I+ K Y + ++ Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + E+R++A+ E+ +E++ EL EI LL+PKD +D+K+ I+EIRAG G Sbjct: 61 TKELLS--SDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DIRID R+ G GGQ VNTTD Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQLQNRERALKILRAKLYEMALQEQQKEIAEARKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + + + Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKLKNVN 354 >gi|84394465|ref|ZP_00993179.1| peptide chain release factor 1 [Vibrio splendidus 12B01] gi|84374906|gb|EAP91839.1| peptide chain release factor 1 [Vibrio splendidus 12B01] Length = 362 Score = 290 bits (742), Expect = 2e-76, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILIKLETLVERYEEVQHLLGDPGVLGNQDKFRALSKEYSQLEEVTGCFKSYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + D+E+R++AQ E+ + I L +E+ LL+PKD +D+++C LEIR Sbjct: 61 DLEAAEEMANE--DDAEMREMAQEEIKDAKANIERLTDELQILLIPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F G+LFRMY R+A + W+VEV+SS+ ++ GG+KE++A ISG V+ MK Sbjct: 119 AGAGGDEAGIFAGNLFRMYSRFAEKKGWRVEVMSSNVSEQGGFKEMIAKISGDAVYGTMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVMPEIPEADLPEIKAGDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAAISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L VL+G + +++P+L HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVLEGDMQSLLDPVLQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|309973234|gb|ADO96435.1| Peptide chain release factor 1 [Haemophilus influenzae R2846] Length = 361 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ ++G GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVTGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P+ E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPKLPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ ++ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEIMNGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|240849863|ref|YP_002971251.1| peptide chain release factor 1 [Bartonella grahamii as4aup] gi|240266986|gb|ACS50574.1| peptide chain release factor 1 [Bartonella grahamii as4aup] Length = 358 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 218/355 (61%), Positives = 282/355 (79%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+ +P+ + Y+KL EYA + P+I+ I + +E Sbjct: 1 MVSLPQDRMRQLEKRFEIIERQMTTNPNAETYVKLASEYAELQPVIASIRALNALYKEIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+I D +D E+R+LAQ E+ + K++ + E E+ LLLPKD D+K+ I+EIRAGT Sbjct: 61 ELETIINDKQTDVEMRNLAQEELPLLYKKVEQFEKELQILLLPKDVADEKNAIVEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA WKVEV+S S+ + GGYKEI+ATISG+GVFS++K+ES Sbjct: 121 GGSEAALFSGDLFRMYERYAHAHHWKVEVISLSEGEVGGYKEIIATISGKGVFSKLKYES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID+DI EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIDIRPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTLYKL+ +L+G +D++++ L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLYKLDRILEGDLDELLHALISDHQTTLLMEM 355 >gi|260772290|ref|ZP_05881206.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14] gi|260611429|gb|EEX36632.1| peptide chain release factor 1 [Vibrio metschnikovii CIP 69.14] Length = 362 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + + Y Q ++ Sbjct: 1 MKASILVKLESLVERYEEVQHLLGDPAVIGDQNKFRSLSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + EI L E+ LLLPKD +DD++C LEIR Sbjct: 61 DFVAAEEMTKE--DDAEMREMAQDEMKAAKAEIERLSAELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+S+S+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSASEAEHGGYKEMIAKVNGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E K+ A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIVQAEEKKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ Q R++DHRINLT+Y+L V++G + +I+P++ HQA ++ + Sbjct: 299 LLGSGDRSDRIRTYNYPQSRVSDHRINLTIYRLNEVMEGDLQALIDPVVQEHQADLLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|218783033|ref|YP_002434351.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans AK-01] gi|226739100|sp|B8FEA2|RF1_DESAA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|218764417|gb|ACL06883.1| peptide chain release factor 1 [Desulfatibacillum alkenivorans AK-01] Length = 355 Score = 290 bits (741), Expect = 2e-76, Method: Composition-based stats. Identities = 186/356 (52%), Positives = 241/356 (67%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ RF E+E +S+ V Y K E+A +S ++ Y Q + ++ Sbjct: 1 MLDRLEGVEQRFLEVESLLSDPKIVGDQKVYQKYVREHADLSKVVEAYREYKQVLEGLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D +I+DLA+ E+ ++KE LE+E+ LLLPKD +DDK+ ILEIRAGTG Sbjct: 61 SKELLKDP--DPDIKDLAKEEIDRLDKEQVRLEDELKILLLPKDPNDDKNVILEIRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DLFRMY RYA R WKVE LS GG KEI A I+G+GV+S KFESG Sbjct: 119 GDEAGLFAADLFRMYSRYAETRGWKVETLSEHLTGVGGIKEIAAMITGQGVYSAFKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TEA GR+HTSA TVAVLPEA E+D+ I +IR+D R+ G+GGQHVNTTD Sbjct: 179 THRVQRVPVTEAQGRIHTSACTVAVLPEAEEVDIQIDPSEIRVDVYRSQGAGGQHVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQH+N+ +AMKVLRARL D + SA RK Q+GSG Sbjct: 239 SAVRLTHLPTGVVVTCQDEKSQHKNKAKAMKVLRARLLDHAVQEQNASISAERKSQVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI LTLYKLE ++ G I +I++ L T + A+ + Sbjct: 299 DRSERIRTYNYPQGRVTDHRIGLTLYKLESIMAGQISEIVDALTTHYNAEALQEGG 354 >gi|291538249|emb|CBL11360.1| bacterial peptide chain release factor 1 (bRF-1) [Roseburia intestinalis XB6B4] Length = 358 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ +SE + + KL +E + ++PI++ Y Q KQ +D Sbjct: 3 DKLEDLLIRFEELMSELSEPDVANDPVRFRKLMKEQSDLTPIVNAYKEYKQCKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ + + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 ALLEEESD-EEMRELAKEELNDSKARVEELEKELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R WK E++ + + GG K + +SG+G +S MK+ESGVH Sbjct: 122 EAALFAAEIYRMYLHYAESRNWKTEIMEADETGIGGMKSVTFMLSGQGAYSVMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVQIDDKDIRIDVCRASGAGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR +LYD+E+++ + + RK Q+G+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLYDLEQQKAHDAEAELRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRINLTLYKL+ ++ G I +II+ + A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRINLTLYKLDKIMNGDIQEIIDACIAADQAAKLAKMNE 356 >gi|148981991|ref|ZP_01816579.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3] gi|145960679|gb|EDK26023.1| peptide chain release factor 1 [Vibrionales bacterium SWAT-3] Length = 362 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + + Y Q + Sbjct: 1 MKASILVKLETLVERYEEVQHLLGDPDVIGDQNKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +D+++C LEIR Sbjct: 61 DLEAAEDMAQE--DDEEMREMAQEEIKEAKEAIERLTDELQILLLPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F G+LFRMY ++A + W+VEV+SS+D++ GGYKE++A +SG GV+ MK Sbjct: 119 AGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNDSEQGGYKEMIAKVSGEGVYGVMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVMPEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLTLY+L VL+G + +I+P+L HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTLYRLNEVLEGDMQSLIDPVLQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|188580162|ref|YP_001923607.1| peptide chain release factor 1 [Methylobacterium populi BJ001] gi|226739114|sp|B1Z914|RF1_METPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|179343660|gb|ACB79072.1| peptide chain release factor 1 [Methylobacterium populi BJ001] Length = 361 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 180/359 (50%), Positives = 251/359 (69%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M + ++ + R + ++++ ++ ++L+ E + + +++ I Y + Sbjct: 1 MTPIPSDRLDAILARHEFVTAQLADGSADAESIVQLSRELSELDGVVAAIRHYRAAEANL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I + D E+R LA E E+ + + + +LLPKD D+KS ILEIRAG Sbjct: 61 AGIRALIDEPGGDPEMRALAAEEKPEAEEALEQAHRALQLMLLPKDAADEKSAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY +YA + W+VEV+S S+ GGY+E+VA + GR VFSR+KFE Sbjct: 121 TGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGYREVVAEVKGRSVFSRLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+D+ I D++IDTMRA G+GGQHVN Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDIAINEADLKIDTMRAQGAGGQHVNK 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITH+PTG++V E+SQH+NR RAM +LR++L+D ER + R+A+RK Q+G Sbjct: 241 TESAIRITHMPTGVVVFVQEERSQHKNRARAMALLRSKLFDAERTAKDSARAADRKAQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE V+ G +D++I+ L+T HQA+++ + Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAGPALDEVIDALVTEHQAELLAAEG 359 >gi|330811719|ref|YP_004356181.1| peptide chain release factor 1 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379827|gb|AEA71177.1| Peptide chain release factor 1 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 360 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + + + + + ++EYA + PI++ + + Sbjct: 1 MKASLLNKLDILQDRFEELTALLGDGEVISDQNKFRTYSKEYAEVEPIVATYKQLLKVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV + ++ ELE+ + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVREAKDQLVELESSLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDNVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAVLPE E + ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMAWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF+QGR+TDHR+NLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLDEILAGGVDAVIEPLLAEYQADQLAAI 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|217977729|ref|YP_002361876.1| peptide chain release factor 1 [Methylocella silvestris BL2] gi|254790890|sp|B8EI32|RF1_METSB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|217503105|gb|ACK50514.1| peptide chain release factor 1 [Methylocella silvestris BL2] Length = 360 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 188/356 (52%), Positives = 266/356 (74%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L +++ + R+ E+ R++E+ Y++L+ E+A + + + I Y + QE + L Sbjct: 1 MLPQEKLDLILRRYDEVSARLNEAVEPALYVQLSREFAGLEQVAAAIRDYRSQMQEVEGL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +DSE+R LA+ E+ ++ + LE+++ LLPKD D++S ILE+RAGTGG Sbjct: 61 AAMLADPTTDSEMRGLAEEELRDAKERLEALEHQLKIALLPKDAADERSAILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA + W VE++S+++ GG+KEI+A I+GRGVF+++KFESG Sbjct: 121 DEAALFAGDLFRMYQRYAESKGWSVEIISANEGAAGGFKEIIAEIAGRGVFAKLKFESGA 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAATVAVLPEA E+DV+I D++IDTMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTETQGRIHTSAATVAVLPEAQEVDVEINEADLKIDTMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTG +V E+SQH+NR RAM +LR+R+YD +R+++ ER+A+R+ Q+GSGD Sbjct: 241 AIRITHIPTGTIVFVQDERSQHKNRARAMALLRSRIYDEQRQKLDAERAADRRSQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D++I+ L T HQA ++ + Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLDKVITGEALDEVIDALTTHHQAALLADSE 356 >gi|119477466|ref|ZP_01617657.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2143] gi|119449392|gb|EAW30631.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2143] Length = 361 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 246/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ +S+ + + Y L++EYA + P++ Y Q Sbjct: 1 MKDSIKNKLDNLVDRHEELGALLSDGEVIGDQNKYRALSKEYAEVEPVVKCYENYCQTLD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +++ D D+++R++AQ E+ + + + E+ LLLP+D +D + LEIR Sbjct: 61 DIEEAKSLLKD--GDADMREMAQEELSGAQSQRDVMMEELQRLLLPRDPNDSHNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WK+E++S D GGYKE+++ +SG+ V++ +K Sbjct: 119 AGTGGDEAAIFSGDLFRMYTRYAENKGWKIEIISERSGDHGGYKELISRVSGQDVYAHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++PE +D +I D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAIMPEVDSVDEVEINKSDLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIP+G++V E+SQH+N+ RAM +L++RL + + E+S R+ Sbjct: 239 VNKTDSAIRITHIPSGLVVECQDERSQHKNKARAMSLLQSRLLTGIQDKQQQEQSDERRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL V++G + D+I+PL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLAEVMEGALGDVIDPLRNEYQADQLAAM 358 Query: 356 S 356 + Sbjct: 359 A 359 >gi|297543676|ref|YP_003675978.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841451|gb|ADH59967.1| peptide chain release factor 1 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 356 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 176/356 (49%), Positives = 251/356 (70%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ + + K +E+AAI I+ K Y + ++ Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVGEWRKYVKEHAAIEEIVLKYREYKKVVEDINS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + E+R++A+ E+ +E++ EL EI LL+PKD +D+K+ I+EIRAG G Sbjct: 61 TKELLS--SDEKELREMAEEELSHLEEKKEELLEEIKILLIPKDPNDEKNVIMEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G +SR+K+ESG Sbjct: 119 GEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DIRID R+ G GGQ VNTTD Sbjct: 179 VHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIRIDVFRSGGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + RK Q+G+G Sbjct: 239 SAVRVTHIPTGIVVTCQDERSQLQNRERALKILRAKLYEMALQEQQKEIAEVRKSQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + + + Sbjct: 299 ERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKLKNVN 354 >gi|53717070|ref|YP_105275.1| peptide chain release factor 1 [Burkholderia mallei ATCC 23344] gi|67639917|ref|ZP_00438745.1| peptide chain release factor 1 [Burkholderia mallei GB8 horse 4] gi|121597849|ref|YP_990282.1| peptide chain release factor 1 [Burkholderia mallei SAVP1] gi|124382410|ref|YP_001024781.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10229] gi|126447218|ref|YP_001079120.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10247] gi|251768001|ref|ZP_04820356.1| peptide chain release factor 1 [Burkholderia mallei PRL-20] gi|254175822|ref|ZP_04882481.1| peptide chain release factor 1 [Burkholderia mallei ATCC 10399] gi|254203239|ref|ZP_04909601.1| peptide chain release factor 1 [Burkholderia mallei FMH] gi|254208574|ref|ZP_04914923.1| peptide chain release factor 1 [Burkholderia mallei JHU] gi|254355790|ref|ZP_04972069.1| peptide chain release factor 1 [Burkholderia mallei 2002721280] gi|61214592|sp|Q62DF3|RF1_BURMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223532|sp|A3MFT4|RF1_BURM7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223533|sp|A2RYL2|RF1_BURM9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223534|sp|A1UWC9|RF1_BURMS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52423040|gb|AAU46610.1| peptide chain release factor 1 [Burkholderia mallei ATCC 23344] gi|121225647|gb|ABM49178.1| peptide chain release factor 1 [Burkholderia mallei SAVP1] gi|124290430|gb|ABM99699.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10229] gi|126240072|gb|ABO03184.1| peptide chain release factor 1 [Burkholderia mallei NCTC 10247] gi|147746284|gb|EDK53362.1| peptide chain release factor 1 [Burkholderia mallei FMH] gi|147751261|gb|EDK58329.1| peptide chain release factor 1 [Burkholderia mallei JHU] gi|148024761|gb|EDK82944.1| peptide chain release factor 1 [Burkholderia mallei 2002721280] gi|160696865|gb|EDP86835.1| peptide chain release factor 1 [Burkholderia mallei ATCC 10399] gi|238520529|gb|EEP83988.1| peptide chain release factor 1 [Burkholderia mallei GB8 horse 4] gi|243061104|gb|EES43290.1| peptide chain release factor 1 [Burkholderia mallei PRL-20] Length = 360 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF G+L RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGNLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|171319081|ref|ZP_02908205.1| peptide chain release factor 1 [Burkholderia ambifaria MEX-5] gi|171095720|gb|EDT40676.1| peptide chain release factor 1 [Burkholderia ambifaria MEX-5] Length = 360 Score = 290 bits (741), Expect = 3e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y +LT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRRLTREHAELGPVVEQYALWRQSRN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DETAAQELLA----DASMRDFAEDEIRSARERMVRLEGELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L+T HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEALMDGDLDELIGALVTEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|323136601|ref|ZP_08071682.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242] gi|322397918|gb|EFY00439.1| peptide chain release factor 1 [Methylocystis sp. ATCC 49242] Length = 356 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 187/355 (52%), Positives = 255/355 (71%), Gaps = 1/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + R+ EI +++ ++ L+ E A + ++ I + ++E DL Sbjct: 1 MFAQDKLDLILRRYDEIGEKLAGGADGQTFVALSRERATLDDVVDAIRAWRDAQREVDDL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D + D E+R LA+ E +++ N + LLPKD D+K ILE+RAGTGG Sbjct: 61 AAMLADSSLDPEMRALAESETDGAREKLEAAANTLRLALLPKDEADEKGVILEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFR Y++YAAL+ W+VE++S S GG+KEIVA I GRGV+ R+KFESGV Sbjct: 121 DEAALFAGDLFRAYQKYAALKGWRVELVSESPGALGGFKEIVAEIIGRGVYGRLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAATVAVLP+A ++D+DI +D++IDTMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPETETQGRIHTSAATVAVLPQAEDVDIDIDEKDLQIDTMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIP+GI+V E+SQH+N+ +AM VLR+RLYD ER+R+ ERS +RK Q+GSGD Sbjct: 241 AIRITHIPSGIVVMMQEERSQHRNKAKAMNVLRSRLYDAERQRLDKERSDDRKQQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL+ V++G D+II+ L T HQ K++ + Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGEFDEIIDALTTDHQQKLLAQSE 355 >gi|152986475|ref|YP_001350646.1| peptide chain release factor 1 [Pseudomonas aeruginosa PA7] gi|166223587|sp|A6VC61|RF1_PSEA7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|150961633|gb|ABR83658.1| peptide chain release factor 1 [Pseudomonas aeruginosa PA7] Length = 360 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 242/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQTRFRAYSREYAEVEPVILAFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+RDLA+ EV + + L + + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPELRDLAEEEVAEARERLAALGDSLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE LS ++ + GGYKE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERQGWRVETLSENEGEHGGYKEVIARVEGENVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITH+P+GI+V E+SQH+NR +AM L A+L D ++ ++ RKL Sbjct: 239 VNKTDSAVRITHLPSGIVVECQEERSQHKNRAKAMAWLAAKLNDQQQAAAQQAIASTRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V++G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVMEGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|317401193|gb|EFV81839.1| peptide chain release factor 1 [Achromobacter xylosoxidans C54] Length = 360 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ ++E +D + KL+ E A + P++ + + + ++ Sbjct: 1 MKSSMRSRLEHLCHRLIEVDALLAEPETASDMDRFRKLSRERAELEPVVEAFTAFVRGEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E++ +A+ E+ + ++ LE + LLLP+D +D +S LEIR Sbjct: 61 DLATAQEMLA----DPELKAMAEDEIKSGRVKLESLEAALQLLLLPRDPNDGRSVFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+VE++S S ++ GGYKE++A I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYTRYAEQRGWRVELMSESPSELGGYKEVIARIEGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVA++ EA E+ I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAIMAEADEMSEIVINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKETRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++ L+ HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLQQIMEGDLEELTGALIAEHQAEQLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|240147055|ref|ZP_04745656.1| peptide chain release factor 1 [Roseburia intestinalis L1-82] gi|257200778|gb|EEU99062.1| peptide chain release factor 1 [Roseburia intestinalis L1-82] gi|291535754|emb|CBL08866.1| bacterial peptide chain release factor 1 (bRF-1) [Roseburia intestinalis M50/1] Length = 357 Score = 289 bits (740), Expect = 3e-76, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ +SE + + KL +E + ++PI++ Y Q KQ +D Sbjct: 3 DKLEDLLIRFEELMSELSEPDVANDPVRFRKLMKEQSDLTPIVNAYKEYKQCKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ + + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 ALLEEESD-EEMRELAKEELNDSKARVEELEKELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R WK E++ + + GG K + +SG+G +S MK+ESGVH Sbjct: 122 EAALFAAEIYRMYLHYAESRNWKTEIMEADETGIGGMKSVTFMLSGQGAYSVMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVQIDDKDIRIDVCRASGAGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR +LYD+E+++ + + RK Q+G+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLYDLEQQKAHDAEAELRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRINLTLYKL+ ++ G I +II+ + A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRINLTLYKLDKIMNGDIQEIIDACIAADQAAKLAKMNE 356 >gi|53720682|ref|YP_109668.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243] gi|76809766|ref|YP_334968.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b] gi|126440521|ref|YP_001060595.1| peptide chain release factor 1 [Burkholderia pseudomallei 668] gi|126454756|ref|YP_001067845.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a] gi|134283294|ref|ZP_01769995.1| peptide chain release factor 1 [Burkholderia pseudomallei 305] gi|167721407|ref|ZP_02404643.1| peptide chain release factor 1 [Burkholderia pseudomallei DM98] gi|167740375|ref|ZP_02413149.1| peptide chain release factor 1 [Burkholderia pseudomallei 14] gi|167817592|ref|ZP_02449272.1| peptide chain release factor 1 [Burkholderia pseudomallei 91] gi|167825994|ref|ZP_02457465.1| peptide chain release factor 1 [Burkholderia pseudomallei 9] gi|167847481|ref|ZP_02472989.1| peptide chain release factor 1 [Burkholderia pseudomallei B7210] gi|167896069|ref|ZP_02483471.1| peptide chain release factor 1 [Burkholderia pseudomallei 7894] gi|167904455|ref|ZP_02491660.1| peptide chain release factor 1 [Burkholderia pseudomallei NCTC 13177] gi|167912716|ref|ZP_02499807.1| peptide chain release factor 1 [Burkholderia pseudomallei 112] gi|167920676|ref|ZP_02507767.1| peptide chain release factor 1 [Burkholderia pseudomallei BCC215] gi|217424712|ref|ZP_03456209.1| peptide chain release factor 1 [Burkholderia pseudomallei 576] gi|226198171|ref|ZP_03793742.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan 9] gi|237813980|ref|YP_002898431.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346] gi|242316197|ref|ZP_04815213.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b] gi|254190473|ref|ZP_04896981.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur 52237] gi|254198514|ref|ZP_04904935.1| peptide chain release factor 1 [Burkholderia pseudomallei S13] gi|254260133|ref|ZP_04951187.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a] gi|254300725|ref|ZP_04968170.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e] gi|61214599|sp|Q63QF0|RF1_BURPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361515|sp|Q3JN85|RF1_BURP1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223535|sp|A3NZS4|RF1_BURP0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223536|sp|A3NE24|RF1_BURP6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52211096|emb|CAH37084.1| peptide chain release factor 1 [Burkholderia pseudomallei K96243] gi|76579219|gb|ABA48694.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710b] gi|126220014|gb|ABN83520.1| peptide chain release factor 1 [Burkholderia pseudomallei 668] gi|126228398|gb|ABN91938.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106a] gi|134245489|gb|EBA45582.1| peptide chain release factor 1 [Burkholderia pseudomallei 305] gi|157810508|gb|EDO87678.1| peptide chain release factor 1 [Burkholderia pseudomallei 406e] gi|157938149|gb|EDO93819.1| peptide chain release factor 1 [Burkholderia pseudomallei Pasteur 52237] gi|169655254|gb|EDS87947.1| peptide chain release factor 1 [Burkholderia pseudomallei S13] gi|217392168|gb|EEC32193.1| peptide chain release factor 1 [Burkholderia pseudomallei 576] gi|225929691|gb|EEH25707.1| peptide chain release factor 1 [Burkholderia pseudomallei Pakistan 9] gi|237505256|gb|ACQ97574.1| peptide chain release factor 1 [Burkholderia pseudomallei MSHR346] gi|242139436|gb|EES25838.1| peptide chain release factor 1 [Burkholderia pseudomallei 1106b] gi|254218822|gb|EET08206.1| peptide chain release factor 1 [Burkholderia pseudomallei 1710a] Length = 360 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|254226890|ref|ZP_04920458.1| peptide chain release factor 1 [Vibrio cholerae V51] gi|125620572|gb|EAZ48938.1| peptide chain release factor 1 [Vibrio cholerae V51] Length = 362 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD DDD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPDDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIDPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|15642178|ref|NP_231810.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|147674456|ref|YP_001217695.1| peptide chain release factor 1 [Vibrio cholerae O395] gi|153213234|ref|ZP_01948646.1| peptide chain release factor 1 [Vibrio cholerae 1587] gi|153801649|ref|ZP_01956235.1| peptide chain release factor 1 [Vibrio cholerae MZO-3] gi|153818801|ref|ZP_01971468.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457] gi|153823572|ref|ZP_01976239.1| peptide chain release factor 1 [Vibrio cholerae B33] gi|153825583|ref|ZP_01978250.1| peptide chain release factor 1 [Vibrio cholerae MZO-2] gi|153828626|ref|ZP_01981293.1| peptide chain release factor 1 [Vibrio cholerae 623-39] gi|227082304|ref|YP_002810855.1| peptide chain release factor 1 [Vibrio cholerae M66-2] gi|229507743|ref|ZP_04397248.1| peptide chain release factor 1 [Vibrio cholerae BX 330286] gi|229512021|ref|ZP_04401500.1| peptide chain release factor 1 [Vibrio cholerae B33] gi|229513825|ref|ZP_04403287.1| peptide chain release factor 1 [Vibrio cholerae TMA 21] gi|229519157|ref|ZP_04408600.1| peptide chain release factor 1 [Vibrio cholerae RC9] gi|229522130|ref|ZP_04411547.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80] gi|229524175|ref|ZP_04413580.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426] gi|229528814|ref|ZP_04418204.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)] gi|229607288|ref|YP_002877936.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236] gi|254291410|ref|ZP_04962203.1| peptide chain release factor 1 [Vibrio cholerae AM-19226] gi|254849258|ref|ZP_05238608.1| peptide chain release factor 1 [Vibrio cholerae MO10] gi|255745092|ref|ZP_05419041.1| peptide chain release factor 1 [Vibrio cholera CIRS 101] gi|262167528|ref|ZP_06035234.1| peptide chain release factor 1 [Vibrio cholerae RC27] gi|20139356|sp|Q9KQ25|RF1_VIBCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|172047628|sp|A5F696|RF1_VIBC3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790906|sp|C3LPI4|RF1_VIBCM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|9656733|gb|AAF95324.1| peptide chain release factor 1 [Vibrio cholerae O1 biovar El Tor str. N16961] gi|124116034|gb|EAY34854.1| peptide chain release factor 1 [Vibrio cholerae 1587] gi|124122826|gb|EAY41569.1| peptide chain release factor 1 [Vibrio cholerae MZO-3] gi|126510644|gb|EAZ73238.1| peptide chain release factor 1 [Vibrio cholerae NCTC 8457] gi|126518907|gb|EAZ76130.1| peptide chain release factor 1 [Vibrio cholerae B33] gi|146316339|gb|ABQ20878.1| peptide chain release factor 1 [Vibrio cholerae O395] gi|148875897|gb|EDL74032.1| peptide chain release factor 1 [Vibrio cholerae 623-39] gi|149740734|gb|EDM54833.1| peptide chain release factor 1 [Vibrio cholerae MZO-2] gi|150422740|gb|EDN14694.1| peptide chain release factor 1 [Vibrio cholerae AM-19226] gi|227010192|gb|ACP06404.1| peptide chain release factor 1 [Vibrio cholerae M66-2] gi|227014075|gb|ACP10285.1| peptide chain release factor 1 [Vibrio cholerae O395] gi|229332588|gb|EEN98074.1| peptide chain release factor 1 [Vibrio cholerae 12129(1)] gi|229337756|gb|EEO02773.1| peptide chain release factor 1 [Vibrio cholerae bv. albensis VL426] gi|229341055|gb|EEO06060.1| peptide chain release factor 1 [Vibrio cholerae TM 11079-80] gi|229343846|gb|EEO08821.1| peptide chain release factor 1 [Vibrio cholerae RC9] gi|229349006|gb|EEO13963.1| peptide chain release factor 1 [Vibrio cholerae TMA 21] gi|229351986|gb|EEO16927.1| peptide chain release factor 1 [Vibrio cholerae B33] gi|229355248|gb|EEO20169.1| peptide chain release factor 1 [Vibrio cholerae BX 330286] gi|229369943|gb|ACQ60366.1| peptide chain release factor 1 [Vibrio cholerae MJ-1236] gi|254844963|gb|EET23377.1| peptide chain release factor 1 [Vibrio cholerae MO10] gi|255736922|gb|EET92318.1| peptide chain release factor 1 [Vibrio cholera CIRS 101] gi|262024100|gb|EEY42795.1| peptide chain release factor 1 [Vibrio cholerae RC27] gi|327484701|gb|AEA79108.1| Peptide chain release factor 1 [Vibrio cholerae LMA3894-4] Length = 362 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIDPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|78484734|ref|YP_390659.1| peptide chain release factor 1 [Thiomicrospira crunogena XCL-2] gi|119361633|sp|Q31IN8|RF1_THICR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78363020|gb|ABB40985.1| bacterial peptide chain release factor 1 (bRF-1) [Thiomicrospira crunogena XCL-2] Length = 363 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 252/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L R E+ +S+ ++ + LT+E++ ++P++ + + Q + Sbjct: 1 MKESIRSKLENLVERLDEVNHLISDPEIINNQNKFRNLTKEHSQLTPVVETFNQFIQNQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q+ +I + D +++++ Q E+ +EK+ LE E+ +LLPKD +DD + LEIR Sbjct: 61 DLQEAKDMIK--SGDPDLKEMGQEELPELEKQQATLEAELQKMLLPKDPNDDANIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA +W+VEV++S + + GGYKEI+A I G G +SR+K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAETMRWQVEVINSQEGEHGGYKEIIARIIGDGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GRVHTSAATV ++PEA + +D+ D+++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATETQGRVHTSAATVVIMPEAQDVEQIDLNPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG +V E+SQH+NR RAM +L +R+ D ++ E + RK Sbjct: 239 VNKTDSAIRITHIPTGTVVECQDERSQHKNRARAMSLLASRIMDERQRIHDQEIAQERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ ++QG + +++PL+ +QA+ + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEIMQGGLQQVVDPLINEYQAEQLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|167838055|ref|ZP_02464914.1| peptide chain release factor 1 [Burkholderia thailandensis MSMB43] Length = 360 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARDRMSRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|187925494|ref|YP_001897136.1| peptide chain release factor 1 [Burkholderia phytofirmans PsJN] gi|238689472|sp|B2SZ27|RF1_BURPP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|187716688|gb|ACD17912.1| peptide chain release factor 1 [Burkholderia phytofirmans PsJN] Length = 360 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S ++D Y KLT E+A + P++ +++ Q Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVDHYALWRQAMN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+ +RD A+ E+ A + + +L E+ +LLPKD +DD++ LEIR Sbjct: 61 DATTAQELLA----DASMRDFAEDEIRAARERMEKLGAELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A +W+VE++S+S++D GGYKE++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|83591213|ref|YP_431222.1| peptide chain release factor 1 [Moorella thermoacetica ATCC 39073] gi|119361560|sp|Q2RFW0|RF1_MOOTA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83574127|gb|ABC20679.1| bacterial peptide chain release factor 1 (bRF-1) [Moorella thermoacetica ATCC 39073] Length = 356 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 242/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEE---YAAISPIISKISIYDQKKQEEQD 61 +++ ++ R+ E+ M + + +L + +AA+ I++ Y Q E + Sbjct: 1 MLEKLEQIEARYEELGRLMGDPEVIADPEQLQKHARAHAALEDIVTTFRRYRQVSNELAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E ++L + E+ + E LE E+ LLLPKD +D+K I+EIRAG G Sbjct: 61 DKAML-EEEKDREFQELLKAEIERLTGEQERLEQELKILLLPKDPNDEKDIIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY+RYA ++W+ E++SS + GG+KEI+ + G+GV+SR+KFESG Sbjct: 120 GEEAALFAGDLFRMYQRYAEKKRWRTEIISSHPTELGGFKEIIFQVEGQGVYSRLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTS ATVAVLPEA E+DV+I ED+R+D +SG GGQ VNTT Sbjct: 180 VHRVQRIPTTESGGRIHTSTATVAVLPEAEEVDVEIKPEDLRVDIFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AM+VLRARL D+ R E + R+ Q+GSG Sbjct: 240 SAVRITHLPTGLVVSCQDEKSQLKNKEKAMRVLRARLLDMARAEREGELAEERRSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LTL+ L+ VL G +D+II+ L+T QA+ + + Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTLHHLDQVLAGELDEIIDALVTTDQAERLKNME 355 >gi|115350468|ref|YP_772307.1| peptide chain release factor 1 [Burkholderia ambifaria AMMD] gi|170703671|ref|ZP_02894403.1| peptide chain release factor 1 [Burkholderia ambifaria IOP40-10] gi|172059501|ref|YP_001807153.1| peptide chain release factor 1 [Burkholderia ambifaria MC40-6] gi|122324144|sp|Q0BIQ0|RF1_BURCM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238689166|sp|B1YSD5|RF1_BURA4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|115280456|gb|ABI85973.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia ambifaria AMMD] gi|170131417|gb|EDT00013.1| peptide chain release factor 1 [Burkholderia ambifaria IOP40-10] gi|171992018|gb|ACB62937.1| peptide chain release factor 1 [Burkholderia ambifaria MC40-6] Length = 360 Score = 289 bits (740), Expect = 4e-76, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y +LT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRRLTREHAELGPVVEQYALWRQSRN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + + + LE E+ +LLPKD +DD++ LEIR Sbjct: 61 DETAAQELLA----DASMRDFAEDEIRSARERMVRLEAELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGAGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I L+T HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEALMDGDLDELIGALVTEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|312958850|ref|ZP_07773369.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6] gi|311286620|gb|EFQ65182.1| Peptide chain release factor 1 [Pseudomonas fluorescens WH6] Length = 360 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + + + + ++EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLQDRFEELTALLGDGEVISDQAKFRAYSKEYAEVEPVVTTYGQWLKTHA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV + ++ LE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVREAKDKLIALEGDLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAVLPE E + ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEQEAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF+QGR+TDHR+NLTLY L+ +L G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLDEILAGGVDAVIEPLLAEYQADQLAAI 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|319406093|emb|CBI79723.1| peptide chain release factor 1 [Bartonella sp. AR 15-3] Length = 359 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 223/355 (62%), Positives = 286/355 (80%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV L ++ L+ RF IE +M+E+P+ + Y+KL EYA + PII I + +E Sbjct: 1 MVSLPQDRMKQLEKRFKIIESQMAENPNAETYVKLASEYAELQPIIVSIRALNSLCKEIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ T+I D +D+E+R+LAQ E+ ++ ++I+ELE E+ LLLPKD D+KS I+EIRAGT Sbjct: 61 DIETIISDTQTDTEMRNLAQEELSSLYQKIQELEQELQILLLPKDIADEKSVIIEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALF GDLFRMYERYA WKVEV+S SD + GGYKEI+ATISG+GVFS++KFES Sbjct: 121 GGSEAALFAGDLFRMYERYANTHNWKVEVISLSDGEVGGYKEIIATISGKGVFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE GR+HTSAATVAVLPEA EID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 181 GVHRVQRIPETETGGRIHTSAATVAVLPEAEEIDIEICPEDIRIDTMRASGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RA+++LRARL+D+ER++ +ERSA+RK Q+GSG Sbjct: 241 DSAVRITHIPTGIMVVQAEKSQHQNRARALQILRARLFDIERQKAESERSASRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRIN+TLYKL+ +++G ++++IN L++ HQ ++ Sbjct: 301 DRSERIRTYNFPQGRVTDHRINMTLYKLDRIMEGDLNELINALISDHQTTLLTEM 355 >gi|90412790|ref|ZP_01220790.1| peptide chain release factor 1 [Photobacterium profundum 3TCK] gi|90326149|gb|EAS42576.1| peptide chain release factor 1 [Photobacterium profundum 3TCK] Length = 362 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ EI+ + + + + L++EY+ + I Y K Sbjct: 1 MKSSILVKLETLVERYEEIQHLLGDPGILSDQNKFRALSKEYSQLEDITQCFQAYLGAKD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + D E+R++AQ EV + I LE+E+ LL+PKD +DD++C +EIR Sbjct: 61 DLEAAEEMAKE--DDPEMREMAQEEVKESKANILRLEDELQVLLIPKDPNDDRNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY RYA R W++EV++ + ++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRYAERRGWRIEVINENRSEQGGYKEMIAKVSGDGAYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMPEIPEAEIPEINTGDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRI LTLY+L V++G +D +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRITLTLYRLNEVMEGDLDSLIQPVIQEHQADELAAM 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|56460033|ref|YP_155314.1| protein chain release factor A [Idiomarina loihiensis L2TR] gi|61214579|sp|Q5QUZ8|RF1_IDILO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56179043|gb|AAV81765.1| Protein chain release factor A [Idiomarina loihiensis L2TR] Length = 364 Score = 289 bits (739), Expect = 4e-76, Method: Composition-based stats. Identities = 178/357 (49%), Positives = 246/357 (68%), Gaps = 7/357 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ L R+ E++ + E + + L+ EY+ + ++ Y Q + ++ Sbjct: 7 ERKLEGLVERYQEVQALLGEPDVISDQNRFRSLSREYSQLEEVVGCFEEYRQNQDDQAAA 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D D+E+R++A+ E+ K ELEN + LLLPKD +DD+SC LEIRAG GG Sbjct: 67 KDMAED--DDAEMREMAEEELKEARKAEEELENRLQLLLLPKDPNDDRSCYLEIRAGAGG 124 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA++F GDLFRMY RYA WKV ++S+SD + GGYKEI+A +SG GV+ RMKFESG Sbjct: 125 DEASIFAGDLFRMYSRYAEKNGWKVNIVSASDGEHGGYKEIIAHMSGDGVYGRMKFESGG 184 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTSA TVAVLPE E + +I D+R+DT RASG+GGQHVN TD Sbjct: 185 HRVQRVPETESQGRIHTSACTVAVLPEIPEAEAVEINPADLRVDTYRASGAGGQHVNRTD 244 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+R+THIPTG++V E+SQH+NR +AM VL+AR+ +E ++ E + R+ +GSG Sbjct: 245 SAIRLTHIPTGVVVECQEERSQHKNRAKAMSVLQARIQRLEDEKRQAEEDSTRRNLVGSG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ Q R+TDHRINLTLY+L+ VL G ID I++ ++T HQA + + SE Sbjct: 305 DRSERIRTYNYPQSRVTDHRINLTLYRLDEVLTGDIDLILDAIITEHQADQLAALSE 361 >gi|303248208|ref|ZP_07334471.1| peptide chain release factor 1 [Desulfovibrio fructosovorans JJ] gi|302490346|gb|EFL50257.1| peptide chain release factor 1 [Desulfovibrio fructosovorans JJ] Length = 357 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 179/354 (50%), Positives = 258/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ ++E ++S+ V + Y KL + +A ++ ++ + + ++ ++ Sbjct: 4 KLESLERKYVDLETQLSDPAVVGDQERYRKLAKAHADLAEVVEAFREHKRLSRDLEENTE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D E+R+LA EV I + + ELE + LLLPKD D+K+ +LEIRAGTGG E Sbjct: 64 LAQDP--DPEMRELALAEVRTIREALPELEARLKLLLLPKDPMDEKNILLEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA ++WKVE++SSS+ GG+KE++A ISG V+SR+K+ESG HR Sbjct: 122 AALFAGDLFRMYSRYAETKRWKVEIMSSSETGSGGFKEVIANISGDKVYSRLKYESGAHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSA TVA++PEA E+DV I D+RID R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPATESQGRIHTSAVTVAIMPEAEEVDVAIDPNDLRIDVYRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V EKSQH+N+ +A+KVLR+RL E+++ E+ A+R+ Q+GSGDRS Sbjct: 242 RVTHIPTGLVVICQDEKSQHKNKAKALKVLRSRLLQAEQEKQRLEQEASRRSQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF Q R+TDHRINLTLYKLE VL+G +D++ + L+ +Q++ + + ++ Sbjct: 302 ERIRTYNFPQSRVTDHRINLTLYKLEAVLEGDLDELFDGLIAHYQSEALKAQAD 355 >gi|262166266|ref|ZP_06034003.1| peptide chain release factor 1 [Vibrio mimicus VM223] gi|262025982|gb|EEY44650.1| peptide chain release factor 1 [Vibrio mimicus VM223] Length = 362 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPAVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEVPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIEPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|86148712|ref|ZP_01066989.1| peptide chain release factor 1 [Vibrio sp. MED222] gi|218708755|ref|YP_002416376.1| peptide chain release factor 1 [Vibrio splendidus LGP32] gi|254790907|sp|B7VKH3|RF1_VIBSL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|85833505|gb|EAQ51686.1| peptide chain release factor 1 [Vibrio sp. MED222] gi|218321774|emb|CAV17730.1| Peptide chain release factor 1 [Vibrio splendidus LGP32] Length = 362 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILIKLETLVERYEEVQHLLGDPDVLGNQDKFRALSKEYSQLEEVTGCFKSYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + D+E+R++AQ E+ + I L +E+ LL+PKD +D+++C LEIR Sbjct: 61 DLEAAEEMANE--DDAEMREMAQEEIKDAKANIERLTDELQILLIPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F G+LFRMY ++A + W+VEV+SS+ ++ GG+KE++A ISG V+ MK Sbjct: 119 AGAGGDEAGIFAGNLFRMYSKFAEKKGWRVEVMSSNVSEQGGFKEMIAKISGDAVYGTMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVMPEIPEADLPEIKAGDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAAISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L VL+G + +++P+L HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVLEGDMQSLLDPVLQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|78065073|ref|YP_367842.1| peptide chain release factor 1 [Burkholderia sp. 383] gi|119361516|sp|Q39K18|RF1_BURS3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|77965818|gb|ABB07198.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia sp. 383] Length = 360 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 257/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S +D Y KLT E+A + P++ + +++ Q + Sbjct: 1 MKTSMQRKLDQLSTRLAELNDLLSRENVTADLDQYRKLTREHAELGPVVEQYALWRQSRS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++G D +RD A+ E+ + + + LE E+ +LLPKD +D+++ LEIR Sbjct: 61 DETAAQELLG----DLSMRDFAEDEIRSARESMSRLETELQKMLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRFAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE ++ G +D++I+ L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYRLEALMDGDLDELISALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|84503529|ref|ZP_01001580.1| peptide chain release factor 1 [Oceanicola batsensis HTCC2597] gi|84388019|gb|EAQ01067.1| peptide chain release factor 1 [Oceanicola batsensis HTCC2597] Length = 349 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 186/354 (52%), Positives = 255/354 (72%), Gaps = 6/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +S ++ + RF +E RM+E + L+ EY+ + P+++ I+ ++Q + + Sbjct: 1 MISADRLAQITQRFEYLEARMAEGGG--DFAALSREYSELRPVVATIAAWEQAQTALSEA 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D E+R LA E+ + ++ ELE + LLPKD D + ++EIR GTGG Sbjct: 59 EGL----RDDPEMRALADEEIQRLRHDLPELEQALQIALLPKDAADSRPAMIEIRPGTGG 114 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RY+ R W+ +V+ ++ + GG KE+VA + G VF+R+KFESGV Sbjct: 115 DEAALFAGDLLRMYQRYSEARGWRFQVVELNETELGGIKEVVANVQGENVFARLKFESGV 174 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I +IRIDTMRASG+GGQHVNTTDS Sbjct: 175 HRVQRVPETESGGRIHTSAATVAVLPEAEDVDIQIDPSEIRIDTMRASGAGGQHVNTTDS 234 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITH+PTGI+V SSEKSQHQNR AM+VLR RL+D+ER++ A+ R+A+RK Q+G+GDR Sbjct: 235 AVRITHVPTGIVVVSSEKSQHQNRAIAMQVLRTRLFDLERQKAADARAADRKAQVGTGDR 294 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLY+L+ V+QG +D++I+ L HQA ++ Sbjct: 295 SERIRTYNFPQGRVTDHRINLTLYRLDQVMQGDLDEVIDALTADHQAMLMAEME 348 >gi|269102026|ref|ZP_06154723.1| peptide chain release factor 1 [Photobacterium damselae subsp. damselae CIP 102761] gi|268161924|gb|EEZ40420.1| peptide chain release factor 1 [Photobacterium damselae subsp. damselae CIP 102761] Length = 362 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 247/355 (69%), Gaps = 7/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ E++ + + + D + L++EY+ + + Y Q + + Sbjct: 8 KLETLEERYEEVQHLLGDPSVISDQDKFRSLSKEYSQLEEVTKCFQAYKQAQDDLAAAEE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D+E+R++AQ E+ + EI LE+E+ LL+PKD +D+++C LEIRAG GG E Sbjct: 68 MANE--DDAEMREMAQEEIKEAKAEIERLEDELQVLLIPKDPNDERNCFLEIRAGAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +F GDLFRMY RYA R W++EV+S++D + GGYKE++A ++G G + +KFESG HR Sbjct: 126 AGIFAGDLFRMYSRYAERRGWRIEVMSANDAEHGGYKEMIAKVTGDGAYGVLKFESGGHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GRVHTSA TVAVLPE E + +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 186 VQRVPATESQGRVHTSACTVAVLPEIPEAEIPEINPSDLKIDTYRSSGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 246 IRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRNLLGSGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYN+ QGR++DHRI LT+Y+L V++G +D +I P+L +QA + + +E Sbjct: 306 SDRIRTYNYPQGRVSDHRITLTIYRLNEVMEGDVDCLIQPVLVEYQADQLAAMAE 360 >gi|332140922|ref|YP_004426660.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep ecotype'] gi|332140929|ref|YP_004426667.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep ecotype'] gi|238693241|sp|B4RSV6|RF1_ALTMD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|327550944|gb|AEA97662.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep ecotype'] gi|327550951|gb|AEA97669.1| peptide chain release factor 1 [Alteromonas macleodii str. 'Deep ecotype'] Length = 361 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 258/362 (71%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E++ + + + D + L++E++ + +++ + Y Q ++ Sbjct: 1 MKESVVRKLEHLVERFEEVQALLGDPEVIGDQDKFRNLSKEFSQLEDVVAGFNAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ + D+E+R++AQ E+ + EI LE E+ LLLPKD +DD +C LEIR Sbjct: 61 NLASAQEMLNE--DDAEMREMAQEEMKEAKGEIERLETELQVLLLPKDPNDDNNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA R W+VE++++++++ GGYKE+VA +SG GV+ +K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAESRGWRVELVNANESEHGGYKEVVANVSGDGVYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E + ++I ++RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVAVLPEIPESEAIEINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL+ARL +E ++ A E ++ RK Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLQARLNQIEEEKRAAEEASTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLT+Y+L+ V++G + +++P+L HQA ++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTIYRLDEVVEGDLKQLVDPILQEHQADLLASL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|307244007|ref|ZP_07526126.1| peptide chain release factor 1 [Peptostreptococcus stomatis DSM 17678] gi|306492531|gb|EFM64565.1| peptide chain release factor 1 [Peptostreptococcus stomatis DSM 17678] Length = 354 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 248/354 (70%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++++ E+ ++++ + + KL +E + I PI+ K Y + Q + Sbjct: 1 MLNKLKVLEDKYKELSQKVADPDIISDQPTWQKLMKETSEIEPIVMKYREYSKASQSIAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD ++R+LA++E+ E + E ENE+ LL+PKD +D+K+ I+EIR G G Sbjct: 61 SKQIL-EEESDEDLRELAKMELSESEALLEEYENELKILLVPKDPNDEKNVIIEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA R WK ++SS++ GGYKE+ I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLFRMYSRYAERRGWKTSLMSSNETGVGGYKEVSFMIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTS ATVAVLPE ++++DI ED+R+D RASG+GGQ VNTTD Sbjct: 180 VHRVQRIPTTESGGRIHTSTATVAVLPEVEDVEIDINPEDVRVDVFRASGNGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG +V EKSQ +N+ +AMKVL+ARLYD + +A RK Q+G+G Sbjct: 240 SAVRLTHIPTGEVVSCQDEKSQLKNKEKAMKVLKARLYDKALAEQQKDIAAERKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR++DHRINLTLYKL+ + G +D++I+ L+T Q + + S Sbjct: 300 DRSERIRTYNFPQGRVSDHRINLTLYKLDSFIDGDLDEMIDALITVDQTEKMSS 353 >gi|313672261|ref|YP_004050372.1| bacterial peptide chain release factor 1 (brf-1) [Calditerrivibrio nitroreducens DSM 19672] gi|312939017|gb|ADR18209.1| bacterial peptide chain release factor 1 (bRF-1) [Calditerrivibrio nitroreducens DSM 19672] Length = 356 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 161/358 (44%), Positives = 254/358 (70%), Gaps = 7/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 H + ++ ++ E+ ++++ + Y +L++E++ + PI+ K Y ++ Sbjct: 1 MFDH--LEEVLEKYNELTEKLADPNVMSDIKVYQQLSKEHSDLKPIVEKYLEYKDVQRSI 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ ++ D D ++ +LA+IE+ ++++ ++ E+ LLLPKD D+K+ +EIRAG Sbjct: 59 KEAEAILKD-GGDKDLIELAEIELAEGKEKLEKISEELKILLLPKDPFDEKNIYIEIRAG 117 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF DL RMY RYA WK E++ +++ GGYKE++ + G+ +S++K+E Sbjct: 118 TGGEESALFAADLLRMYIRYAEKCGWKTEIIDANETGMGGYKEVILLVKGKNAYSKLKYE 177 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +G HRVQR+P TE+SGR+HTSA TVAV+PEA ++DV I +D+RID R+SG+GGQHVNT Sbjct: 178 AGGHRVQRIPETESSGRIHTSACTVAVIPEADDVDVHIDPKDLRIDVYRSSGAGGQHVNT 237 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTGI+V E+SQ +N+ +AMK+L+++++++E +R E++ NRK Q+G Sbjct: 238 TDSAVRITHIPTGIVVSCQDERSQIKNKEKAMKLLKSKIFEMELERQRTEQAENRKQQVG 297 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF Q R+TDHRINLT+Y L+ V++G +D+II+ L+T QA+ + + Sbjct: 298 SGDRSERIRTYNFPQNRLTDHRINLTVYNLDMVMEGELDEIIDALITYDQAEKLKNIG 355 >gi|54309994|ref|YP_131014.1| peptide chain release factor 1 [Photobacterium profundum SS9] gi|61214628|sp|Q6LNB4|RF1_PHOPR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46914433|emb|CAG21212.1| putative peptide chain release factor A [Photobacterium profundum SS9] Length = 362 Score = 289 bits (739), Expect = 5e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ EI+ + + + + + L++EY+ + I Y K Sbjct: 1 MKSSILVKLETLVERYEEIQHLLGDPGIIGDQNKFRALSKEYSQLEDITQCFQAYLGAKD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D D E+R++AQ EV + I LE+E+ LL+PKD +DD++C +EIR Sbjct: 61 DLEAAEEMAKD--DDPEMREMAQEEVKESKANILRLEDELQVLLIPKDPNDDRNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY RYA R W++EV++ + ++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRYAERRGWRIEVINENRSEQGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMPEVPEAEIPEINTGDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARITKAEEEKRHAEEASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRI LTLY+L V++G +D +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRITLTLYRLNEVMEGDMDSLIQPVIQEHQADELAAM 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|269138757|ref|YP_003295458.1| peptide chain release factor 1 [Edwardsiella tarda EIB202] gi|267984418|gb|ACY84247.1| peptide chain release factor 1 [Edwardsiella tarda EIB202] gi|304558750|gb|ADM41414.1| Peptide chain release factor 1 [Edwardsiella tarda FL6-60] Length = 360 Score = 289 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EYA ++ + + Q + + Sbjct: 8 KLEALQERHEEVQALLGDAGVIADQDRFRALSREYAQLTDVSHCFLDWRQVQDDLATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ A + +LE + LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEEIKAARGRLADLEQHLQILLLPKDPDDERDCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W++E++S+S+ + GGYKE++A +SG G + R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRIEIMSASEGEHGGYKEVIAKVSGDGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+P E + I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPAVPEAELPQINPADLRIDTYRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEIAKRQQEVASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R+RTYNF QGR+TDHRINLTLY+L+ V++G +D++I P++ HQA + + +E Sbjct: 304 SDRVRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDNLIEPIVQEHQADQLSALAE 358 >gi|261209906|ref|ZP_05924207.1| peptide chain release factor 1 [Vibrio sp. RC341] gi|260841092|gb|EEX67617.1| peptide chain release factor 1 [Vibrio sp. RC341] Length = 362 Score = 289 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIEPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|258621065|ref|ZP_05716099.1| Peptide chain release factor 1 [Vibrio mimicus VM573] gi|258626137|ref|ZP_05720985.1| Peptide chain release factor 1 [Vibrio mimicus VM603] gi|262170842|ref|ZP_06038520.1| peptide chain release factor 1 [Vibrio mimicus MB-451] gi|258581492|gb|EEW06393.1| Peptide chain release factor 1 [Vibrio mimicus VM603] gi|258586453|gb|EEW11168.1| Peptide chain release factor 1 [Vibrio mimicus VM573] gi|261891918|gb|EEY37904.1| peptide chain release factor 1 [Vibrio mimicus MB-451] Length = 362 Score = 289 bits (738), Expect = 5e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPAVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIEPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|75674575|ref|YP_316996.1| peptide chain release factor 1 [Nitrobacter winogradskyi Nb-255] gi|119361570|sp|Q3SVP7|RF1_NITWN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|74419445|gb|ABA03644.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter winogradskyi Nb-255] Length = 358 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 198/356 (55%), Positives = 259/356 (72%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ L R A +E + S D Y+++T E A ++PI+ + + E + Sbjct: 1 MLPEAKLDLLLARHAALESELLSHVSADRYVQMTRELAELNPIVDAVKNWRAVTAEIAGI 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D +D+E+R +A+ E A+E EL +I LLPKD D+++ +LE+RAGTGG Sbjct: 61 DAMIADPATDAEMRAMAEAERPALEARNDELMQKIRVALLPKDAMDERNVMLEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDLFRMYER+AAL+ WKVEV+S+S+ GGYKEIVA + GRG ++RMKFESGV Sbjct: 121 DEASLFAGDLFRMYERFAALQGWKVEVISASEGTMGGYKEIVAQVQGRGAYARMKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GRVHTSAATVAVLPEA E+DVDI +D+RI+TMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTEAQGRVHTSAATVAVLPEAEEVDVDIRPDDLRIETMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTGI+V+ +SQH+NR AM +LR+R+YD ER+R+ RSA+RK Q+GSGD Sbjct: 241 AIRITHIPTGIVVSMQDSRSQHKNRASAMNILRSRIYDAERQRINAARSADRKDQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + + Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLAAEG 356 >gi|255037851|ref|YP_003088472.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053] gi|254950607|gb|ACT95307.1| peptide chain release factor 1 [Dyadobacter fermentans DSM 18053] Length = 357 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 163/356 (45%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ ++ + V Y K+++EY + I+ + ++Y + +++ Sbjct: 1 MIDKLEAIKERFEEVSQQIIQPEVVSDSTRYSKISKEYKDLGRIVEQYALYQKLQKDIAG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D ++R++A+ E+ + ++ ELE I LL+PKD +D ++ ILEIR GTG Sbjct: 61 TKELIA-TEKDEDLREMAKEELDDLLPKLEELEQNIKELLIPKDPNDSRNIILEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLFRMY+R+ W+ V+ ++ +GGYKEI+ + G V+ +MKFESG Sbjct: 120 GDEAAIFAGDLFRMYQRFIEKMGWRSSVMDYTEGTNGGYKEIICKVEGEDVYGKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE+ GR+HTSAA+VAVLPEA E+DV I + D+RIDT ++SG+GGQ VNTT Sbjct: 180 VHRVQRVPATESQGRIHTSAASVAVLPEAEEVDVQINMNDVRIDTFQSSGAGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+G++V E+SQ +N+ RA+ VLR+RLY++E K+ + S+ RK +GSG Sbjct: 240 SAVRLTHIPSGLVVSCQDERSQLKNKDRALSVLRSRLYEIELKKHNDAISSQRKSMVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS++IRTYN+ Q RITDHRI T+Y L V++G I D+I L A A+ + Sbjct: 300 DRSDKIRTYNYPQSRITDHRIGYTVYNLPAVMEGDIADLIEKLRIAENAERMQEGE 355 >gi|145634872|ref|ZP_01790579.1| peptide chain release factor 1 [Haemophilus influenzae PittAA] gi|145267738|gb|EDK07735.1| peptide chain release factor 1 [Haemophilus influenzae PittAA] Length = 361 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 258/362 (71%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKEVIVKVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVINGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|167564255|ref|ZP_02357171.1| peptide chain release factor 1 [Burkholderia oklahomensis EO147] gi|167571406|ref|ZP_02364280.1| peptide chain release factor 1 [Burkholderia oklahomensis C6786] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 182/362 (50%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++G D+ +RD A+ E+ + + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLG----DASMRDFAEDELRGARERMGRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|302875888|ref|YP_003844521.1| peptide chain release factor 1 [Clostridium cellulovorans 743B] gi|307689321|ref|ZP_07631767.1| peptide chain release factor 1 [Clostridium cellulovorans 743B] gi|302578745|gb|ADL52757.1| peptide chain release factor 1 [Clostridium cellulovorans 743B] Length = 358 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 167/356 (46%), Positives = 244/356 (68%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ +++S+ + + KL +E++ + +++K Y + ++ +D Sbjct: 1 MLERLNFIENKYDELSIKISDPSIMSNQKEWQKLCKEHSDLGIVVNKYKEYKKTIEDIED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D + D E+++LA E+ +E + E E+ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKEMIQDGSLDPELKELASEEIKELEILKNKYEEELRILLLPKDPNDDKNVYVEIRAGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA +VE +S + D GG KEIV I G G +S++K+ESG Sbjct: 121 GEEAALFANNLTRMYARYAETHGCRVETISINPTDLGGIKEIVMMIKGTGAYSKLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVA++PE +++++I D+RID RASG GGQ VNTTD Sbjct: 181 VHRVQRVPDTESSGRIHTSTATVAIMPEVDDVEIEISANDLRIDVFRASGHGGQCVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V EKSQ +N+ +A+ VL+ARL++ + + +RK Q+G+G Sbjct: 241 SAVRITHLPTGIVVSCQDEKSQLKNKEKALNVLKARLFEKAESERSASIAEDRKSQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI LTLYKL+ L G ID++IN L+T QAK + + Sbjct: 301 DRSERIRTYNYPQGRVTDHRIGLTLYKLDSFLDGAIDEVINALITEDQAKKMEAMG 356 >gi|91785343|ref|YP_560549.1| peptide chain release factor 1 [Burkholderia xenovorans LB400] gi|119361518|sp|Q13TU2|RF1_BURXL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91689297|gb|ABE32497.1| bacterial peptide chain release factor 1 (bRF-1) [Burkholderia xenovorans LB400] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S ++D Y KLT E+A + P++ +++ Q Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVEHYALWRQAMN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+ +RD A+ E+ A + + +L E+ +LLPKD +DD++ LEIR Sbjct: 61 DAATAQELLA----DASMRDFAEEEIRAARERMDKLGAELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|315634081|ref|ZP_07889370.1| peptide chain release factor RF1 [Aggregatibacter segnis ATCC 33393] gi|315477331|gb|EFU68074.1| peptide chain release factor RF1 [Aggregatibacter segnis ATCC 33393] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + ++ + D + ++EY+ + ++ S ++Q Sbjct: 1 MKPSIINKLDSLKERYEELEALLGDASVISDQDKFRAYSKEYSQLEDVVKSFSRWNQLNA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + E+ ++E + LLLPKD +D+ +C LEIR Sbjct: 61 NLEEAQLLL----DDPEMKEMAQMEIEESKAELEQVEQHLQILLLPKDPNDEYNCYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W++EVLS ++++ GG+KEI+A +SG G + ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAETKRWRIEVLSENESEQGGFKEIIALVSGDGAYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPSDLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG++V E+SQH+N+ +A+ VL +RL E++++ E++ R+ Sbjct: 237 INKTDSAVRITHIPTGMVVECQDERSQHKNKAKALSVLASRLVQQEQEKLEQEQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G IDD+I P++T +QA + + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVMNGKIDDLIQPIITEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|28868324|ref|NP_790943.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato str. DC3000] gi|32171519|sp|Q888C1|RF1_PSESM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|28851561|gb|AAO54638.1| peptide chain release factor 1 [Pseudomonas syringae pv. tomato str. DC3000] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYKQLARVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPKTESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + A+ ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAASAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|307544472|ref|YP_003896951.1| peptide chain release factor 1 [Halomonas elongata DSM 2581] gi|307216496|emb|CBV41766.1| peptide chain release factor 1 [Halomonas elongata DSM 2581] Length = 363 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 171/363 (47%), Positives = 249/363 (68%), Gaps = 8/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ RF E+ +++ + + + EYA + +++ Y ++ Sbjct: 1 MKASLRQRLDTFAERFEELAALLADPEVIADQPRFRDYSREYAELDDLVAAWRDYRAVEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D+E+R+LA +E + +++ LE + LL+P+D DD + LEIR Sbjct: 61 DIEAAESLADDA--DAEMRELASMERESGREKLEALETRLKQLLVPRDPDDAGNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA L WKVE++S+S D GGYKE+++ + G GV++R+K Sbjct: 119 AGTGGDEAALFAGDLFRMYSRYAELHGWKVEIVSASHGDQGGYKELISRVKGEGVYARLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEAAE+ ++DI ++R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEAAEVGEIDIDPNELRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+P+G++V E+SQH+NR +AM +L ARL + +++ R+ Sbjct: 239 VNTTDSAIRITHLPSGVVVECQEERSQHKNRAKAMSLLAARLKQAAQDSQRQQQADERRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL V+ G +D++I PL+ +QA+ + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLSDVVGGEGLDEVIEPLINEYQAEQLAA 358 Query: 355 ASE 357 + Sbjct: 359 LQQ 361 >gi|83720975|ref|YP_443437.1| peptide chain release factor 1 [Burkholderia thailandensis E264] gi|167582488|ref|ZP_02375362.1| peptide chain release factor 1 [Burkholderia thailandensis TXDOH] gi|257137781|ref|ZP_05586043.1| peptide chain release factor 1 [Burkholderia thailandensis E264] gi|119361517|sp|Q2SUG2|RF1_BURTA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83654800|gb|ABC38863.1| peptide chain release factor 1 [Burkholderia thailandensis E264] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 250/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|154246564|ref|YP_001417522.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2] gi|226739122|sp|A7IIM2|RF1_XANP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|154160649|gb|ABS67865.1| peptide chain release factor 1 [Xanthobacter autotrophicus Py2] Length = 360 Score = 289 bits (738), Expect = 6e-76, Method: Composition-based stats. Identities = 191/350 (54%), Positives = 253/350 (72%), Gaps = 2/350 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L R AEIE +S + Y++L E++ +SP++ ++ +++ + Sbjct: 1 MTALPTAKLDQLVARHAEIEAALSRGAEGEEYVRLGREFSDLSPVVEQVRALKDAERDLE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + +D E+R++A+ EV ++ I L + LLPKD D++ ILE+RAGT Sbjct: 61 GANELLAESAADPEMREMAEAEVERLQDRIEALATAVRLALLPKDAMDERGIILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDL+RMY RYAA + W VE+LS S+ GGYKEIVA + GRG ++R+KFES Sbjct: 121 GGDEAALFAGDLYRMYTRYAAEKGWSVEILSESEGTMGGYKEIVAALHGRGAYARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE SGR+HTSAATVAVLPEA ++DVDI D+RID RA G+GGQHVN T Sbjct: 181 GVHRVQRVPATETSGRIHTSAATVAVLPEAEDVDVDINEADLRIDVYRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+PT +V E+SQH+N+ RAM +LRARL D ER++ R+A RK Q+GS Sbjct: 241 ESAVRITHLPTNTVVAVQDERSQHRNKARAMALLRARLLDDERQKKEAGRAAERKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQ 348 GDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+II+PLLT HQ Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLDEVIAGTALDEIIDPLLTEHQ 350 >gi|224368815|ref|YP_002602976.1| PrfA [Desulfobacterium autotrophicum HRM2] gi|223691531|gb|ACN14814.1| PrfA [Desulfobacterium autotrophicum HRM2] Length = 391 Score = 289 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 167/356 (46%), Positives = 237/356 (66%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQD 61 ++ +K R+ ++E +S+ + +K +E+ ++ ++S + Y Q+ + Sbjct: 38 MINKLQGIKERYIKLENLLSDPAVIADQVKYQRCLKEHGELTKVVSAFADYQAVLQQMGE 97 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D D +IR++A+ E + + LE+++ LL+PKD DDK+ ILEIRAGTG Sbjct: 98 AKDLAKDP--DPDIREMAKEETADLRAQREGLESKLKLLLMPKDPRDDKNVILEIRAGTG 155 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DLFRMY RYA ++ W V V+ SS + GG+KE+++ I G G FS K+ESG Sbjct: 156 GEEAGLFAADLFRMYSRYAEIKGWTVNVIESSHSSAGGFKEVISMIKGNGAFSAFKYESG 215 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE GRVHTSA TVAVLPEA ++++ I ++++D RASG GGQ VNTTD Sbjct: 216 THRVQRVPETETQGRVHTSAVTVAVLPEAEDVELKIEPSELKVDVFRASGPGGQSVNTTD 275 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+ EKSQ +N++ A+KVL+AR+ D + +R+A RK Q+G+G Sbjct: 276 SAVRITHLPTGIVATCQDEKSQIKNKIAALKVLKARILDAMVREQEAKRAAQRKGQVGTG 335 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS RIRTYNF QGR+TDHRI LTLY+L+ ++ G I DII+ L T QA+ + A+ Sbjct: 336 DRSGRIRTYNFPQGRMTDHRIGLTLYRLDNIMGGDIQDIIDELKTHAQAEALKEAN 391 >gi|189424095|ref|YP_001951272.1| peptide chain release factor 1 [Geobacter lovleyi SZ] gi|238692126|sp|B3E628|RF1_GEOLS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189420354|gb|ACD94752.1| peptide chain release factor 1 [Geobacter lovleyi SZ] Length = 355 Score = 289 bits (738), Expect = 7e-76, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 253/355 (71%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I DL+ RF E+E +S+ + + KL+ E+A ++P+I Y + E ++ Sbjct: 3 DKIQDLEIRFQELESLLSDPTVIANQPEFRKLSREHADLAPLIEAFRRYKKVLDELEENQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ + +E L+ EI LLLPKD +D + ILEIRAGTGG Sbjct: 63 ELLA----DPEMKEMAEEEISRLSQEKERLDAEIKILLLPKDPNDSRDVILEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY R+A +WKVE+LS S+++ GGYKE++A+I G+ V++++K+ESG H Sbjct: 119 ESALFSGDLFRMYSRFAEKNRWKVEMLSCSESERGGYKEVIASIEGQDVYAKLKYESGTH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVA++ EA ++D+DI D++ID R+SG+GGQHVNTTDSA Sbjct: 179 RVQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG +V E+SQ +NR +AMKVL+ R+ D ++ + +A+RK Q+GSGDR Sbjct: 239 VRITHIPTGTVVACQEERSQIKNRAKAMKVLKTRILDTIQQEQNAKLAADRKQQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ ++ G I++I + L +Q + + + SE Sbjct: 299 SERIRTYNFPQGRMTDHRIGLTLYRLDSIMAGDIEEITDALRAHYQMEALKAQSE 353 >gi|288942095|ref|YP_003444335.1| peptide chain release factor 1 [Allochromatium vinosum DSM 180] gi|288897467|gb|ADC63303.1| peptide chain release factor 1 [Allochromatium vinosum DSM 180] Length = 359 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 176/360 (48%), Positives = 244/360 (67%), Gaps = 9/360 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + RF E+ ++E + + L+ EYA + P++ Y ++ Sbjct: 1 MTPSIRAKLERIAERFGEVMALLAEPETQSDQGRFRDLSREYAQLQPLMECYERYRDAER 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +D E+ LA+ E+ A + + LE E+ LL+P D +D + LEIR Sbjct: 61 DLAAAEELL----TDPEMAALARDEIEAARERLDVLEPELQTLLIPPDPNDQCNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG+EAALF GDL RMY RYA L W+ E +S+S+ + GGYKE+V +SG GV+SR+K Sbjct: 117 AGTGGAEAALFAGDLMRMYMRYAELLGWRTEQVSASEGELGGYKEVVIRVSGSGVYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FE G HRVQRVP TE+ GR+HTSA TVAVLPEA ID ++I D+RIDT R+SG+GGQH Sbjct: 177 FEPGAHRVQRVPETESQGRIHTSACTVAVLPEAESIDAIEINSNDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR +AM +L A+L R+ A+E+S +RKL Sbjct: 237 VNKTDSAIRITHLPSGIVVECQEERSQHKNRAKAMSLLHAKLLAGARETQASEQSESRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+GSGDRSERIRTYNF Q R+TDHRINLTLYKL+ V+ G +D +I PLL ++A+ + + Sbjct: 297 QVGSGDRSERIRTYNFPQNRLTDHRINLTLYKLDEVMTGQLDQVIEPLLAEYRAEQLAAM 356 >gi|52082235|ref|YP_081026.1| peptide chain release factor 1 [Bacillus licheniformis ATCC 14580] gi|52787627|ref|YP_093456.1| peptide chain release factor 1 [Bacillus licheniformis ATCC 14580] gi|319648109|ref|ZP_08002326.1| peptide chain release factor 1 [Bacillus sp. BT1B_CT2] gi|81608865|sp|Q65DV1|RF1_BACLD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52005446|gb|AAU25388.1| peptide chain release factor 1 [Bacillus licheniformis ATCC 14580] gi|52350129|gb|AAU42763.1| PrfA [Bacillus licheniformis ATCC 14580] gi|317389744|gb|EFV70554.1| peptide chain release factor 1 [Bacillus sp. BT1B_CT2] Length = 356 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 162/356 (45%), Positives = 241/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ ++ +S+ V+ KL ++E + + + Y ++ D Sbjct: 1 MLDRLKSIEDRYEKLNELLSDPEVVNDPKKLREYSKEQSDLQETVEVYRRYRSASEQLSD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + DS++R++ + E+ +++EI L +++ LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAML-EEKLDSDMREMVKEEISELQEEIESLTDQLKVLLIPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA L+ WK EV+ ++ GGYKEI+ I+G G +SR+K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAELQGWKTEVMEANMTGTGGYKEIIFMINGNGAYSRLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E NRK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQNRKSAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D++I+ L+ QA + A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVIDALIVEDQASKLQQAE 355 >gi|167031789|ref|YP_001667020.1| peptide chain release factor 1 [Pseudomonas putida GB-1] gi|189039985|sp|B0KNE4|RF1_PSEPG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166858277|gb|ABY96684.1| peptide chain release factor 1 [Pseudomonas putida GB-1] Length = 360 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+ + + + + Sbjct: 1 MKASLLNKLDILQDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVYAAYKEWCKVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ LE+++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDLREMAVEEVREAKEQLLTLESQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W++E+LS ++ + GGYKEI+A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKRGWRLEILSENEGEHGGYKEIIARVEGENVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAVLPEPDEQAAIEINPADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM L A+L D++ N ++ RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRARAMSWLSAKLNDMQTSAAQNAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLY L+ +L G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYSLDDILSGGVEAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|167627296|ref|YP_001677796.1| peptide chain release factor 1 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189039973|sp|B0TX37|RF1_FRAP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167597297|gb|ABZ87295.1| peptide chain release factor 1 [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 361 Score = 288 bits (737), Expect = 7e-76, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 257/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + E+ + + + L++EY+ + PI+ Y Q + Sbjct: 1 MKDSIKAKLQSLIERHEEVSALLGEANVISDQNKFRDLSKEYSHLEPIVMAFKEYTQALE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +++ + ++ + D+E+ ++A+ E+ + + I LE+E+ LLLP+D +DD + LEIR Sbjct: 61 DKEAAYEMLNEK--DAELVEMAKEELKSANESIERLEDELQILLLPRDPNDDANIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF+MY +YA R WK+EV+S+S+ + GGYKEI++ I G GV+S++K Sbjct: 119 AGTGGDEASIFSGDLFKMYSKYAEQRGWKIEVVSASEGEHGGYKEIISRIYGDGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PEA E++ +DI DI++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEADEVEGIDINPADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR AM +L+++L E + E+S RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDQRSQHKNRAAAMSMLKSKLLQAEIDKQQKEQSDTRKN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G +D II PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEVMEGSLDSIIQPLILEHQADLLATM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|311109118|ref|YP_003981971.1| peptide chain release factor [Achromobacter xylosoxidans A8] gi|310763807|gb|ADP19256.1| peptide chain release factor 1 [Achromobacter xylosoxidans A8] Length = 360 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E++ ++E +D + KL+ E A + P++ + + + + Sbjct: 1 MKSSMRSRLEHLCHRLIEVDALLAEPETASDMDRFRKLSRERAELEPVVEAFTAFARTED 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD +++ +A+ E+ + ++ ELE + LLLP+D +D +S LEIR Sbjct: 61 DLAAAQEML----SDPDLKSMAEDEIKSGRAKLEELEAALQLLLLPRDPNDGRSLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+VE++S S ++ GGYKE++A I G G + R+K Sbjct: 117 AGTGGDESALFSGDLLRMYTRYAEQRGWRVELMSESASELGGYKEVIARIDGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVA++ EA E+ I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATEAQGRIHTSACTVAIMAEADEMSEIVINPNDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V ++SQH+N+ +AM+VL ARL D E + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGLVVECQDDRSQHRNKDKAMQVLAARLKDKETRERQSKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G ++++ L+ HQA+ + + Sbjct: 297 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLQQIMEGDLEELTGALIAEHQAEQLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|254438684|ref|ZP_05052178.1| peptide chain release factor 1 [Octadecabacter antarcticus 307] gi|198254130|gb|EDY78444.1| peptide chain release factor 1 [Octadecabacter antarcticus 307] Length = 344 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 191/346 (55%), Positives = 252/346 (72%), Gaps = 4/346 (1%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + RF +E RM E DA++ ++ EYA + P++ + Y +E + ++ Sbjct: 2 QITERFEFLEARMGEGLGGDAFVSVSREYAELRPVVEVVRHYQDLTEEIEGAQAML---- 57 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD E+++LA++E+ + + + + E + L+PKD D K +LEIR GTGG EAALF G Sbjct: 58 SDPEMKELAEMELPQLRERLPDAEAAVKLALIPKDAADGKPALLEIRPGTGGDEAALFAG 117 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DL RMY+RYA R W E+L S ++ GG KE+ A I+G VF+RMK+ESGVHRVQRVP Sbjct: 118 DLLRMYQRYAESRGWTFEILEESQSELGGIKEVTARIAGNNVFARMKYESGVHRVQRVPE 177 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TE+ GR+HTSAATVAVLPEA ++D+ I DIRIDTMRASGSGGQHVNTTDSAVRITH+P Sbjct: 178 TESGGRIHTSAATVAVLPEAEDVDIQINANDIRIDTMRASGSGGQHVNTTDSAVRITHMP 237 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 +GI+VTSSEKSQH+NR AM+VL+ RLYD ER+++ +ERSA+R Q+GSGDRSERIRTYN Sbjct: 238 SGIVVTSSEKSQHRNREIAMQVLKTRLYDAERQKVHDERSADRAAQVGSGDRSERIRTYN 297 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 F QGR+TDHRINLTLYKL+ +LQG +D++I+ L+ QA + Sbjct: 298 FPQGRMTDHRINLTLYKLDAILQGDLDEVIDGLIQDAQASALAEMG 343 >gi|317130773|ref|YP_004097055.1| peptide chain release factor 1 [Bacillus cellulosilyticus DSM 2522] gi|315475721|gb|ADU32324.1| peptide chain release factor 1 [Bacillus cellulosilyticus DSM 2522] Length = 357 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 246/355 (69%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ + + + + KL ++E + I + Y + K++ D Sbjct: 3 DRLEAVEERYERLNELLMDPDVISDTKKLRDYSKEQSDIEETVQTFREYKEIKKQYTDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ + + D E+ ++ ++E+ +E +I LE ++ LLLPKD +DDK+ I+EIR GG Sbjct: 63 TMLKEEDLDDEMYEMVKMEMDELEDQIPPLEEKLRVLLLPKDPNDDKNVIVEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + W+ EV+ +S+ND GGYKEI+ I+G+G +S+MK+E+G H Sbjct: 123 EAALFAGDLYRMYSRYAEAQGWRPEVIEASENDIGGYKEIIFMINGKGAYSKMKYENGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++VDI +DIR+DT +SG GGQ VNTT SA Sbjct: 183 RVQRVPTTESGGRIHTSTATVAVLPEAEEVEVDINEKDIRVDTFASSGPGGQSVNTTMSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTG++V EKSQ +N+ +AMKVLRAR+YD RK E + NRK +G+GDR Sbjct: 243 VRLTHIPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFRKEAEAEYAQNRKSAVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LTL KL+ +L+G +D+I + L+ Q++M+ A E Sbjct: 303 SERIRTYNFPQSRVTDHRIGLTLQKLDQILEGKLDEITDALIVEEQSRMMEEAGE 357 >gi|227824241|ref|ZP_03989073.1| peptide chain release factor [Acidaminococcus sp. D21] gi|226904740|gb|EEH90658.1| peptide chain release factor [Acidaminococcus sp. D21] Length = 359 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 167/357 (46%), Positives = 244/357 (68%), Gaps = 5/357 (1%) Query: 3 FLSH-KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 H ++ L++R+ ++E ++S+ + + K T+ +A ++ ++ Y + ++ Sbjct: 1 MFEHLDKLQALEDRYIDLEAKISDPSVISDQAQWQKYTKAHAKLTDVVETYRAYQKLQKT 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D ++ SD E+ +A++E+ + ++ + E + LLLPKD +D+K+ I+EIRA Sbjct: 61 YDDDQALLEMGESDEELAAMAEMEMKELAPQLEDYEKRLTILLLPKDPNDEKNIIMEIRA 120 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG EAALF GDLFRMY RYA + W+VE++ SS GG+KE++ +SG V+S MKF Sbjct: 121 GAGGDEAALFAGDLFRMYTRYAETKGWRVELMDSSPTGLGGFKEVIFMVSGSDVYSHMKF 180 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESGVHRVQRVP TEA GR+HTS ATVAV+PEA E+DVDI + DIRIDT RA G+GGQ+VN Sbjct: 181 ESGVHRVQRVPETEAQGRIHTSTATVAVMPEAEEVDVDIKMSDIRIDTYRAGGAGGQYVN 240 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVR+THIPTGI+ EKSQ +NR + ++VLR+R+Y+ ++ + R+ Q+ Sbjct: 241 KTESAVRMTHIPTGIVAQCQDEKSQAKNREKCLRVLRSRIYEAAQEAQRAAEESERRSQV 300 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 G+GDRSERIRTYNF QGR+TDHRI LTL+KL V+ G +D+++ L+T Q K + Sbjct: 301 GTGDRSERIRTYNFPQGRVTDHRIGLTLHKLTDVMNGDLDELLGALMTEEQTKKLQQ 357 >gi|331018122|gb|EGH98178.1| peptide chain release factor 1 [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 360 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYKQLARVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM L A+L D + A+ ++ RKL Sbjct: 239 VNKTDSAIRITHLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAASAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|257092416|ref|YP_003166057.1| peptide chain release factor 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044940|gb|ACV34128.1| peptide chain release factor 1 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 360 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 171/356 (48%), Positives = 250/356 (70%), Gaps = 9/356 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L R E++ ++ +D Y +L+ E+A I+P+++ I+ + + + Sbjct: 7 DKLEHLTGRLDELDRMLASGDATRDMDEYRRLSREHAEIAPVVALYQIWSRTRSDLAAAL 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G D E+R+LA+ EV A ++ + ++E ++ LLLP+D D+++ LEIRAGTGG Sbjct: 67 DMVG----DPEMRELAEAEVAASKERLPQIEKDLQKLLLPRDAKDERNVFLEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF G+LFRMY RYA R+W+VEV+S+S +D GGY+EI+A I G V++R+KFESG H Sbjct: 123 ESALFAGNLFRMYTRYAERRRWQVEVISASASDLGGYREIIARIIGSDVYARLKFESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEA GR+HTSA TVAV+PEA +V + DIRIDT RASG+GGQH+N TDS Sbjct: 183 RVQRVPDTEAQGRIHTSACTVAVMPEADALEEVQVNPADIRIDTYRASGAGGQHINKTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V ++SQH+N+ +AM VL AR+ D++ + ++ R+ +GSGD Sbjct: 243 AVRITHLPTGVVVECQDDRSQHKNKAQAMSVLVARIRDMQEREQDASIASERRSLVGSGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRINLTLYK++ ++ G +D+++ L HQA + +E Sbjct: 303 RSERIRTYNFPQGRVTDHRINLTLYKIDAIMDGDLDELLGALTAEHQADQLAMLAE 358 >gi|163803585|ref|ZP_02197452.1| peptide chain release factor 1 [Vibrio sp. AND4] gi|159172627|gb|EDP57484.1| peptide chain release factor 1 [Vibrio sp. AND4] Length = 362 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTQCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLAAAEDMANE--DDEEMREMAQEEIKEAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNESEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA T+AV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTLAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E +R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEEERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLTLY+L V++G + +I+P++ H A + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTLYRLNEVMEGDLQSLIDPVVQEHHADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|313202185|ref|YP_004040843.1| peptide chain release factor 1 [Methylovorus sp. MP688] gi|312441501|gb|ADQ85607.1| peptide chain release factor 1 [Methylovorus sp. MP688] Length = 356 Score = 288 bits (737), Expect = 8e-76, Method: Composition-based stats. Identities = 180/358 (50%), Positives = 247/358 (68%), Gaps = 9/358 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ L R E+ +S +D Y K++ E+A I+PI+ + Y+Q + + ++ Sbjct: 1 MLKKLATLSERLDELNRLLSSEDATSDMDNYRKISREHAEITPIVEQYRAYEQCENDLKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H ++ D E++ AQ E+ A + + E+ + LLLPKD +D+++ LEIRAGTG Sbjct: 61 AHAMLA----DPEMKAFAQEEIEAGKARLEEIAMALQKLLLPKDPNDERNIFLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDLFRMY RYA ++WKVEV+S+S+++ GGYKEI+A I G G +S++KFESG Sbjct: 117 GDESALFAGDLFRMYSRYAERQRWKVEVVSASESEVGGYKEIIAKIEGFGAYSKLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVP TE GR+HTSA TVAVLPE E DV I DIRIDT RASG+GGQH+N T Sbjct: 177 GHRVQRVPETETQGRIHTSACTVAVLPEVDEVSDVTINPADIRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH PTGI+V +SQH N+ +AM+VL AR+ + ++ ++ R+ IGS Sbjct: 237 DSAVRITHFPTGIVVECQDGRSQHSNKAQAMQVLAARIKAKQVNEQQSKIASERRSLIGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYN+ QGRITDHRINLTLYK++ + +G +D++IN L HQA ++ + E Sbjct: 297 GDRSERIRTYNYPQGRITDHRINLTLYKIDAITEGDMDELINALANEHQADLLATLGE 354 >gi|330445230|ref|ZP_08308882.1| peptide chain release factor 1 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489421|dbj|GAA03379.1| peptide chain release factor 1 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 362 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + L++EY+ + + Y Q K+ Sbjct: 1 MKQSILVKLETLVERYEEVQHLLGDPDVLADQNRFRALSKEYSQLEEVTKCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ + EI L +E+ LLLPKD +DD++C +EIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQEEIKEAKAEIERLADELQVLLLPKDPNDDRNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W+VEV+S + + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAERRGWRVEVISENRAEQGGYKEMIAKVNGDGAYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAVLPE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVLPEVPEAEIPEINTGDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRI LTLY+L V++G +D +I P+L HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRITLTLYRLNEVMEGDLDALIQPVLQEHQADQLAAM 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|331270451|ref|YP_004396943.1| peptide chain release factor 1 [Clostridium botulinum BKT015925] gi|329127001|gb|AEB76946.1| peptide chain release factor 1 [Clostridium botulinum BKT015925] Length = 357 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 248/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +N++ E+ +++S+ + + + KL +E+A + I++K Y K+E Sbjct: 1 MLDKLDFTENKYEELSIKISDPSVMANQNEWRKLCKEHAELETIVTKYREYKNNKEELVA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + N D +++++ Q E+ +E+ I E E+ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKELLSEEN-DRDMKEMIQEEIKTLEESIVSDEEELKILLLPKDPNDDKNVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA WK E++S+++ D GG+KE+V + G +S+MKFESG Sbjct: 120 GDEAALFAANLFRMYTRYAERHGWKTELMSANETDIGGFKEVVFMLRGDSAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D+ I DIRID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRIDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V EKSQ +N+ +A+KVL+ARLY+ A SA+RK Q+G+G Sbjct: 240 SAVRMTHIPTGIVVSCQDEKSQLKNKEKALKVLKARLYEKAEAERAASISADRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+T+HRI +TLYKL+ L G +++II+ L+TA QA+ + + Sbjct: 300 DRSERIRTYNYPQGRVTEHRIGVTLYKLDAFLDGDMEEIIDALITAEQAEKMKAMG 355 >gi|299065550|emb|CBJ36721.1| peptide chain release factor RF-1 [Ralstonia solanacearum CMR15] Length = 356 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 173/359 (48%), Positives = 245/359 (68%), Gaps = 11/359 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ L R EI ++ ++D Y KLT E+A I P++++ + + Q + + Sbjct: 1 MLS--KLDQLAERTVEINALLAREDATANLDQYRKLTREHAEIEPVVAQYAAWKQAEDDV 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D +++ A+ E+ A + + LE E+ LLLPKD +D ++ LEIRAG Sbjct: 59 TTAQELLA----DPDMKAFAEDEIRAAREHMTTLEAELQRLLLPKDPNDHRNIFLEIRAG 114 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ + G G +SR+KFE Sbjct: 115 TGGDESALFAGDLLRMYTRYAERQRWQVEIVSESASDLGGYKEVIVRLVGEGAYSRLKFE 174 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HRVQRVPATEA GR+HTSA TVAV+PEA D+ I D+RIDT RASG+GGQH+N Sbjct: 175 SGGHRVQRVPATEAQGRIHTSACTVAVMPEADPLADIQINPADLRIDTFRASGAGGQHIN 234 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVR+TH+PTG++V ++SQH+N+ RAM+VL ARL D + + + ++ RK I Sbjct: 235 KTDSAVRLTHLPTGLVVECQDDRSQHRNKDRAMQVLAARLKDRQEREAQAKEASARKSLI 294 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GSGDRS+RIRTYNF QGRITDHRINLTLYK++ ++ G + +++ L HQA+ + + Sbjct: 295 GSGDRSDRIRTYNFPQGRITDHRINLTLYKIDALMDGDLGELLGALAAEHQAEQLAALG 353 >gi|302381433|ref|YP_003817256.1| peptide chain release factor 1 [Brevundimonas subvibrioides ATCC 15264] gi|302192061|gb|ADK99632.1| peptide chain release factor 1 [Brevundimonas subvibrioides ATCC 15264] Length = 367 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 187/353 (52%), Positives = 251/353 (71%), Gaps = 4/353 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + +RF ++E RM + ++L++E+A + P+ + + + E ++L Sbjct: 15 LPQSKLDQVLDRFHQVEARMGAASDGQEIVRLSKEHAEMKPVADAVLALAKARTEIEELQ 74 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+ + E+ + + E+E ++ LL P+D D++ S +LE+RAGTGG Sbjct: 75 AMTA----DPEMAAMVADELETLNARLPEMERDVALLLAPRDADENASAVLEVRAGTGGD 130 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA+ R WKVE+ S+++ D GGYKEI+AT++G GVF R+KFESGVH Sbjct: 131 EAALFAGDLFRMYSRYASTRGWKVELDSATEGDAGGYKEIIATVTGDGVFGRLKFESGVH 190 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSAATVAVLPE ++++DI +DIRIDT RASGSGGQHVN TDSA Sbjct: 191 RVQRVPTTEAGGRIHTSAATVAVLPEVEDVEIDIQDKDIRIDTYRASGSGGQHVNKTDSA 250 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH P+GI+VTSSEKSQH NR +AMK LR RLYD++R+ N RS RK Q+GSGDRS Sbjct: 251 VRITHFPSGIVVTSSEKSQHVNRDKAMKNLRVRLYDMQRQMKDNARSDARKSQVGSGDRS 310 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF QGR+TDHRI LTL+ L +L+G +D ++N L+ QA + Sbjct: 311 ERIRTYNFPQGRVTDHRIGLTLHSLPQILEGDLDALLNALIAEDQAARLSDLE 363 >gi|193222210|emb|CAL60419.2| Peptide chain release factor 1 (RF-1) [Herminiimonas arsenicoxydans] Length = 361 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 252/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ + + + ++D Y K+T E+A + P+++ Y Q Sbjct: 2 MKPSMLAKLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADN 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +D ++ SD ++++ AQ E+ A + + +LE ++ +LLPKD +D+++ LEIR Sbjct: 62 DIKDAQGML----SDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A +W++E++S S ++ GGYKE++ I G G +S++K Sbjct: 118 AGTGGDESALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA E DV+I D+RIDT RASG+GGQH Sbjct: 178 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+V ++SQH+N+ A+KVL AR+ DV+ + ++ +A RK Sbjct: 238 INKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKS 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL++++ G + ++ N L HQA ++ + Sbjct: 298 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAAL 357 Query: 356 SE 357 + Sbjct: 358 GD 359 >gi|255280026|ref|ZP_05344581.1| peptide chain release factor 1 [Bryantella formatexigens DSM 14469] gi|255269117|gb|EET62322.1| peptide chain release factor 1 [Bryantella formatexigens DSM 14469] Length = 357 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 251/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ ++E + KL +E + PI+ Y + K+ +D Sbjct: 3 DKLEDLLIRFEELLNELNEPGVASDPAHFQKLMKEQGNLQPIVDAYKEYKECKKTVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R++ + E+ + I ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AML-DGESDEEMREMLKEELNTAKDRIAELETELKILLLPKDPNDDKNVIMEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++R+Y +YA R+W+VE+L++ + GG KE+ I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEMYRLYVKYAEKRRWRVELLNADEIGIGGMKEVNFMITGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTVTVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+V + +EKSQ QN+ +A +LRA+LYD+E+++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVVYSQTEKSQLQNKAKAFALLRAKLYDIEQQKAHDAEAQLRRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYKL+ ++ G ID++++ L+ A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKLDSIMDGDIDELLDSLIAADQAAKLTAMNE 356 >gi|254180490|ref|ZP_04887088.1| peptide chain release factor 1 [Burkholderia pseudomallei 1655] gi|184211029|gb|EDU08072.1| peptide chain release factor 1 [Burkholderia pseudomallei 1655] Length = 360 Score = 288 bits (737), Expect = 9e-76, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARDRMGRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESPSDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THI TGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHISTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|332980841|ref|YP_004462282.1| peptide chain release factor 1 (bRF-1) [Mahella australiensis 50-1 BON] gi|332698519|gb|AEE95460.1| bacterial peptide chain release factor 1 (bRF-1) [Mahella australiensis 50-1 BON] Length = 356 Score = 288 bits (736), Expect = 9e-76, Method: Composition-based stats. Identities = 171/356 (48%), Positives = 254/356 (71%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +++S+ + + KL +E++ + PI++K Y + +++ D Sbjct: 1 MLDKLDSIEERYEQLSVKISDPEVISQQDMWRKLVKEHSDLEPIVTKYREYKEVVRQKDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I + D+E+++LAQ E+ +++ +LE E+ LLLPKD +D+++ I+EIRAG G Sbjct: 61 VLAMIKET-GDAELKELAQQELDELKEREDKLEEELKRLLLPKDPNDERNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY YA R WK+EV+ S+ D GG KEIV + G+G +SR+K+ESG Sbjct: 120 GEEAALFAANLFRMYSLYAESRGWKIEVMDSNYTDLGGIKEIVFAVEGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTS ATVAVLPEA E++V+I D+RID R++G GGQ VNTTD Sbjct: 180 VHRVQRVPVTEAGGRIHTSTATVAVLPEAEEVEVEINPNDLRIDVYRSTGHGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V EKSQ +N+ +AM+VL++RL + + + + R+ Q+G+G Sbjct: 240 SAVRITHIPTGMVVTCQDEKSQLKNKDKAMRVLKSRLLAIAQAEQDAQLAQTRRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LT+Y+LE L G +D++I+ L+TA QA+ + A+ Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTIYQLEAFLNGDMDEMIDALITADQAERLSQAA 355 >gi|113461093|ref|YP_719161.1| peptide chain release factor 1 [Haemophilus somnus 129PT] gi|119361547|sp|Q0I3B5|RF1_HAES1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|112823136|gb|ABI25225.1| bacterial peptide chain release factor 1 (bRF-1) [Haemophilus somnus 129PT] Length = 360 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R E+E + E ++ + ++EYA + ++ + ++ Sbjct: 1 MKASIISKLESLKERHEELEALLGEPSVINDQDKFRAYSKEYAQLEDVVKCFARWNWLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D +++++A++E+ + EI E ++ LLLPKD +D+ + LEIR Sbjct: 61 NIEETQLLL----DDPDMKEMAELEIEESKAEIENAEQQLQILLLPKDPNDEYNAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VEVL++++++ GGYKEI+ ++G GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEVLNANESEQGGYKEIIVKVNGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ E++R A ++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIAQAEQERQAQAQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAML 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|225374519|ref|ZP_03751740.1| hypothetical protein ROSEINA2194_00134 [Roseburia inulinivorans DSM 16841] gi|225213757|gb|EEG96111.1| hypothetical protein ROSEINA2194_00134 [Roseburia inulinivorans DSM 16841] Length = 358 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 237/355 (66%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ +SE + + KL +E + I PI+ Y Q KQ +D Sbjct: 3 DKLEDLLIRYEELMSELSEPDVANNPERFRKLMKEQSDILPIVEAYKEYKQCKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + + + A + LENE+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AMLEEESDEEMRELAKEELNDAKNRVAE-LENELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY+ YA + WK E++ D GG K + I+G G +S MK+ESGVH Sbjct: 122 EAALFAAEIYRMYQHYAETKNWKTEIMECDDTGIGGMKSVTFMITGAGAYSVMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA ++DV I +DIRID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEDVDVQIDEKDIRIDVCRASGAGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR +L+D+E+++ + + RK QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQIQNKAKAFALLRTKLFDLEQQKAHDAEAELRKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRINLTLYKL+ ++ G I +II+ + A QA + + ++ Sbjct: 302 SEKIRTYNFPQGRVTDHRINLTLYKLDKIMNGDIQEIIDACIAADQAAKLANMNQ 356 >gi|291547175|emb|CBL20283.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus sp. SR1/5] Length = 358 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 245/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ + E D + KL +E + + PI+ Y + K+ +D Sbjct: 3 DKLDDLLVRFEELLNELGEPGVTDDPAHFQKLMKEQSDLQPIVDAYKEYKKNKETIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + D E+R++ + E+ +K + ELE+E+ LLLPKD +D K+ I+EIR G GG Sbjct: 63 SML-ESEKDEEMREMLKEELSDAKKRVEELEHELKILLLPKDPNDSKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA R+WK E+LS ++N GG+KE+ I G G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESRRWKTEMLSLNENGIGGFKEVTFMIKGEGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID + L + + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDLNECKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A++VLR+RLY++E + + + R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALRVLRSRLYEMELAKQHDAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL++LE +L G +D+II+ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHRLENILNGDLDEIIDSLIAADQAVKLTKLNE 356 >gi|297582072|ref|ZP_06943991.1| peptide chain release factor 1 [Vibrio cholerae RC385] gi|297533767|gb|EFH72609.1| peptide chain release factor 1 [Vibrio cholerae RC385] Length = 362 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +++P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLVDPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|262404524|ref|ZP_06081079.1| peptide chain release factor 1 [Vibrio sp. RC586] gi|262349556|gb|EEY98694.1| peptide chain release factor 1 [Vibrio sp. RC586] Length = 362 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPAVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKEAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIEPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|152980137|ref|YP_001351903.1| peptide chain release factor 1 [Janthinobacterium sp. Marseille] gi|166223564|sp|A6SUF6|RF1_JANMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151280214|gb|ABR88624.1| RF-1 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 360 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 252/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + + + ++D Y K+T E+A + P+++ Y Q Sbjct: 1 MKPSMLAKLDQLTERLDELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYRQADS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + QD ++ SD ++++ AQ E+ A + + +LE ++ +LLPKD +DD++ LEIR Sbjct: 61 DIQDAQGML----SDPDMKEFAQEEIAAAKTRMEQLEIDLQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY R+A +W++E++S S ++ GGYKE++ I G G +S++K Sbjct: 117 AGTGGDEAALFAGDLLRMYSRFAERNRWQIEMVSESASEVGGYKEVIVRIIGFGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVA++PEA E DV+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAIMPEADEVEDVNINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+V ++SQH+N+ A+KVL AR+ DV+ + ++ +A RK Sbjct: 237 INKTDSAVRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL++++ G + ++ N L HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQAELLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|332188246|ref|ZP_08389974.1| peptide chain release factor 1 [Sphingomonas sp. S17] gi|332011745|gb|EGI53822.1| peptide chain release factor 1 [Sphingomonas sp. S17] Length = 357 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 185/357 (51%), Positives = 260/357 (72%), Gaps = 4/357 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M +S ++I ++ R E++ M+ D ++ +++EYA + P+ + + + +QE Sbjct: 1 MKTISAERIAQIEARRDELQAMMATGDLPSDRFVAVSKEYAELEPVANAAAEVRRLRQEA 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + D D E+R+LA E+ A + + + LLP+D D+++ +LEIRAG Sbjct: 61 DSLTFMTQD--GDDELRELAAEELHANRTALAAADRHLALALLPRDAADERAAMLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY+RYA + W+VEV+S+S D GGYKE+VA+++G GVF+++KFE Sbjct: 119 TGGDEAALFAGDLFRMYQRYAERQGWRVEVISASIPDTGGYKEVVASVAGAGVFAKLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RID R+SG+GGQHVNT Sbjct: 179 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDLQIDDKDLRIDIYRSSGAGGQHVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSA+RITHIPTG++V E+SQH+NR +AMKVLR RLY+ ER+R+A ER+ R+ +G Sbjct: 239 TDSAIRITHIPTGLVVIQQDERSQHKNRAKAMKVLRTRLYEAERERLAAERAGTRRSMVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYNF QGR+TDHRINLTL++L +L+G +D++I LL +A+ + + Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGELDELIGALLAEDEAERLAAL 355 >gi|268592708|ref|ZP_06126929.1| peptide chain release factor 1 [Providencia rettgeri DSM 1131] gi|291311851|gb|EFE52304.1| peptide chain release factor 1 [Providencia rettgeri DSM 1131] Length = 360 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 248/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EIE ++++ + D + L++EYA +S + S + + + + Sbjct: 8 KLEALQERYEEIEAHLADAGVIADQDRFRALSKEYAQLSDVAKCFSAWRTVQDDIETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ + ELE ++ LLLPKD DD+ +C +EIRAG GG E Sbjct: 68 LL----DDPEMKEMAQEELKEAKARNEELEQQLQLLLLPKDPDDEYNCFVEIRAGAGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +W+VE++S+SD + GG+KE++A ISG V+ R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAENNRWRVELMSTSDGEHGGFKEVIAKISGDSVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVA+LPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAILPELPEAELPEISPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRQAEMDKRQAAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDSLIQPIINEYQADQLSALSE 358 >gi|307823419|ref|ZP_07653648.1| peptide chain release factor 1 [Methylobacter tundripaludum SV96] gi|307735404|gb|EFO06252.1| peptide chain release factor 1 [Methylobacter tundripaludum SV96] Length = 361 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 256/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L R+ EI +SE + + L++EYA I+P++ Y Q + Sbjct: 1 MKQSIQHKLENLCERYDEIAALLSEPEVQGNQNKFRSLSQEYAQINPLVDCYKRYQQTLE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D SD E+R++A+ EV E ++ +E+E+ LLLPKD +D+++ +EIR Sbjct: 61 SLASAKEMAND--SDPELREMAKEEVNDAENQLEAIEHELQVLLLPKDPNDNRNIFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL RMY+RYA + W+ E+++ S D GGYKE++ ++G+ V+S++K Sbjct: 119 AGTGGDEAAIFSGDLARMYQRYAERKGWQTEIINESHGDHGGYKEVILRVAGKDVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE E+D +DI D+++DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAIMPEVDEVDAIDINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N T+SA+RITH+PTG++V E+SQH+NR RAM +L +RL E+++ E+SA RKL Sbjct: 239 INKTESAIRITHVPTGVVVECQDERSQHKNRARAMSLLASRLLSAEQEKHHAEQSATRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ ++QG ++ +I PL++ HQA+++ Sbjct: 299 QVGSGDRSERIRTYNYPQGRLTDHRINLTLYKLDDIMQGGLEQVIQPLISEHQAELLTQL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|71909299|ref|YP_286886.1| peptide chain release factor 1 [Dechloromonas aromatica RCB] gi|119361530|sp|Q479R5|RF1_DECAR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71848920|gb|AAZ48416.1| bacterial peptide chain release factor 1 (bRF-1) [Dechloromonas aromatica RCB] Length = 360 Score = 288 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L +R EI+ +S +D + KL+ E A + P++ + + + Q + Sbjct: 1 MKSSIRQKLELLVDRLDEIDRMLSAPSTASDMDQFRKLSRERAEVEPVVVQFNAFRQAEN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD ++R+ A+ E+ A + + ELE E+ LLLPKD +D++S +LEIR Sbjct: 61 DLAEAEAML----SDPDMREFAEEEMAAAKARLPELELELQKLLLPKDPNDERSVLLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF G LFRMY R+A ++W+VEV+S+S+++ GGY+EI+ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGSLFRMYSRFAERQRWQVEVMSASESELGGYREIICRIAGNGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PE E DV++ D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPETETQGRIHTSACTVAVMPEVDEVEDVNLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+ +SQH N+ A+KVL AR+ DV+ + S+ RK Sbjct: 237 INKTDSAVRITHLPTGIVAECQDGRSQHANKASALKVLAARIKDVQVRAQQAHISSTRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGRITDHRINLTLYK+ ++ G +D+++ L HQA ++ Sbjct: 297 LIGSGDRSERIRTYNFPQGRITDHRINLTLYKIAAIMDGDMDELLGALAAEHQADLLAEL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|332532477|ref|ZP_08408355.1| peptide chain release factor 1 [Pseudoalteromonas haloplanktis ANT/505] gi|332038120|gb|EGI74567.1| peptide chain release factor 1 [Pseudoalteromonas haloplanktis ANT/505] Length = 361 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M + ++ L R+ E++ +S+ + + L++EY+ + I+ Y + + Sbjct: 1 MKESVYNKLETLVERYEEVQALLSDPSVISDQNRFRALSKEYSELEEIVKTFLNYKETQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D SD E+R++AQ E + +I +E++I L+LPKD D+ + +E+R Sbjct: 61 DLASAEEMLKD--SDPEMREMAQEEYKEAKAQILVIEDQIQVLMLPKDPRDNNNVFVEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA +KWKVEV+S+++ + GGYKE++A ISG GV+ ++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAENKKWKVEVVSTNEGEHGGYKEVIANISGEGVYGQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+ + I D+++DT RASG+GGQH Sbjct: 179 FESGVHRVQRVPETESQGRVHTSACTVAVMAEVPEAEAIQINTADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIPTG++V ++SQH+NR +AM VL ARL E ++ ++ R+ Sbjct: 239 VNKTDSAIRLTHIPTGVVVECQDQRSQHKNRAKAMSVLAARLQQAEDEKRHAAEASERRD 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLY+L V+ G + II+PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYRLNEVVAGDLSAIIDPLMQEHQADLLAAM 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|209883257|ref|YP_002287114.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5] gi|229470351|sp|B6JA06|RF1_OLICO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|209871453|gb|ACI91249.1| peptide chain release factor 1 [Oligotropha carboxidovorans OM5] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 195/353 (55%), Positives = 261/353 (73%), Gaps = 2/353 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ L R A +E + + +AY++ T E A ++P++ + Y E DL Sbjct: 1 MLPDAKLDILLARHAALEAELLGQLNAEAYVRATRELAELTPVVDAVKAYRAGASELSDL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D +D+E+R +A+ E +++ LE +I LLPKD D+++ +LE+RAGTGG Sbjct: 61 DAMIDDPTTDAEMRAMAESERPVLQERQENLEQQIRIALLPKDAMDERNVVLEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDLFRMYER+AAL+ WKVEV+S+S+ GGYKEIVA + GRG F+++KFESGV Sbjct: 121 DEASLFAGDLFRMYERFAALQGWKVEVISASEGTVGGYKEIVAQVQGRGAFAKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEASGR+HTSAATVAVLPEA EID+DI D+RI+TMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTEASGRIHTSAATVAVLPEAEEIDIDIKDTDLRIETMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTGI+V +SQH+NR AM +LR+R+ D ER+R A+ERSA+R+ Q+GSGD Sbjct: 241 AIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRILDAERQRAASERSADRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIG 353 RSER+RTYNF QGR+TDHRINLTLYKL V+ G ++++I+ L T HQA ++ Sbjct: 301 RSERVRTYNFPQGRVTDHRINLTLYKLPQVIAGEALNELIDALTTEHQAALLA 353 >gi|168177471|ref|ZP_02612135.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916] gi|226947362|ref|YP_002802453.1| peptide chain release factor 1 [Clostridium botulinum A2 str. Kyoto] gi|254790873|sp|C1FQ97|RF1_CLOBJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|182670538|gb|EDT82512.1| peptide chain release factor 1 [Clostridium botulinum NCTC 2916] gi|226843349|gb|ACO86015.1| peptide chain release factor 1 [Clostridium botulinum A2 str. Kyoto] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 245/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++AQ E+ + + +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLKEE-SDKELREMAQEEIKELTLRLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ I G+G +SR+K+ESG Sbjct: 120 GEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID++I L+T QA+ + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLG 355 >gi|145639103|ref|ZP_01794711.1| peptide chain release factor 1 [Haemophilus influenzae PittII] gi|145272075|gb|EDK11984.1| peptide chain release factor 1 [Haemophilus influenzae PittII] gi|309751054|gb|ADO81038.1| Peptide chain release factor 1 [Haemophilus influenzae R2866] Length = 361 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 256/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W +EVLS ++++ GG+KEI+ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWSMEVLSENESEQGGFKEIIVLVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +AM VL +R+ E++R A E++ R+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKAMSVLASRIVQAEQERQAAEQTDMRRN 297 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + + Sbjct: 298 LLGSGDRSDKIRTYNYPQGRVTDHRINLTIYRLDEVINGKIDELIQPIITEYQADQLAAL 357 Query: 356 SE 357 SE Sbjct: 358 SE 359 >gi|331006967|ref|ZP_08330210.1| Peptide chain release factor 1 [gamma proteobacterium IMCC1989] gi|330419229|gb|EGG93652.1| Peptide chain release factor 1 [gamma proteobacterium IMCC1989] Length = 360 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 180/361 (49%), Positives = 252/361 (69%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L+ R+ E+ +S+ ++ + + +L+ EYA I P+++ + Y + Sbjct: 1 MKSSILEKLDLLQERYVEVGALLSDPGTIADQNRFRELSREYAEIEPVVNCYNEYRKILD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D SD ++R + Q E+ + E+E LE E+ LLLPKD +DDK+ LEIR Sbjct: 61 NLEEAQVLLKD--SDPDMRAMGQEELKSAEEERAPLELELQKLLLPKDPNDDKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA R+W+VE++S S ++ GGYKE++A I G+GV+S++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSKYAEKRRWQVEIVSESRSEQGGYKEVIARIVGQGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++PEA I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAIMPEADAQAEVAINKADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIPTG++V E+SQH+NR RAM +L ARL + A E + RK Sbjct: 239 VNKTDSAIRLTHIPTGVVVECQDERSQHKNRARAMSLLAARLQSAQDDVAAKEMADERKN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L V++G +DD++ PL+ HQA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYRLNEVMEGDLDDVVQPLVNEHQADQLAAL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|167620578|ref|ZP_02389209.1| peptide chain release factor 1 [Burkholderia thailandensis Bt4] Length = 360 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 250/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S +D Y KLT E+A I P++ + + Q + Sbjct: 1 MKTSMQSKLDQLTTRLAELNDLLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRQARA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ D+ +RD A+ E+ + + L E+ +LLPKD +D+++ +EIR Sbjct: 61 DELAAQELLA----DASMRDFAEDELRGARERMSRLAAELQTMLLPKDPNDERNIFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESASDLGGYKEVIVRIAGYGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+THIPTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHIPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEQIMDGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|153939567|ref|YP_001389502.1| peptide chain release factor 1 [Clostridium botulinum F str. Langeland] gi|168182252|ref|ZP_02616916.1| peptide chain release factor 1 [Clostridium botulinum Bf] gi|170755459|ref|YP_001779766.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra] gi|166223550|sp|A7G9P2|RF1_CLOBL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229576659|sp|B1IE21|RF1_CLOBK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|152935463|gb|ABS40961.1| peptide chain release factor 1 [Clostridium botulinum F str. Langeland] gi|169120671|gb|ACA44507.1| peptide chain release factor 1 [Clostridium botulinum B1 str. Okra] gi|182674565|gb|EDT86526.1| peptide chain release factor 1 [Clostridium botulinum Bf] gi|295317603|gb|ADF97980.1| peptide chain release factor 1 [Clostridium botulinum F str. 230613] gi|322804409|emb|CBZ01959.1| peptide chain release factor 1 [Clostridium botulinum H04402 065] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++AQ E+ + ++ +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLKEE-SDKELREMAQEEIKELTLKLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ I G+G +SR+K+ESG Sbjct: 120 GEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID++I L+T QA+ + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLG 355 >gi|237793457|ref|YP_002861009.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657] gi|259585216|sp|C3KYH5|RF1_CLOB6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229260673|gb|ACQ51706.1| peptide chain release factor 1 [Clostridium botulinum Ba4 str. 657] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD ++R++AQ E+ + ++ +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLKEE-SDKDLREMAQEEIKELTLKLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ I G+G +SR+K+ESG Sbjct: 120 GEEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID++I L+T QA+ + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLG 355 >gi|187777270|ref|ZP_02993743.1| hypothetical protein CLOSPO_00822 [Clostridium sporogenes ATCC 15579] gi|187774198|gb|EDU38000.1| hypothetical protein CLOSPO_00822 [Clostridium sporogenes ATCC 15579] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++AQ E+ + ++ +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLREE-SDKELREMAQEEIKELTLKLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ + G+G +SR+K+ESG Sbjct: 120 GDEAALFASNLLRMYTRYAERKNWKVETMSLNATDIGGFKEVTVAVKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID++I L+T QA+ + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEVIEALVTEDQAEKMKDLG 355 >gi|186477469|ref|YP_001858939.1| peptide chain release factor 1 [Burkholderia phymatum STM815] gi|238691299|sp|B2JHK8|RF1_BURP8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|184193928|gb|ACC71893.1| peptide chain release factor 1 [Burkholderia phymatum STM815] Length = 360 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 179/362 (49%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S ++D Y KLT E+A + P++ + ++ Q Sbjct: 1 MKTSMQAKLDQLTTRLAELNDLLSREDITSNIDQYRKLTREHAELQPVVEQYGLWRQTMN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD+ ++D A+ E+ A + + LE+E+ +LLPKD +DD++ LEIR Sbjct: 61 DAATAQELL----SDASMKDFAEEEIRASRERMETLESELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+LE +++G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLESIMEGDLDELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|332971801|gb|EGK10749.1| peptide chain release factor RF1 [Desmospora sp. 8437] Length = 358 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 237/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ E+ +S + K ++E + + P Y + + ++ Sbjct: 6 ERLESIRQRYEELNQLLSNPEVIHNADLLRKYSKEQSDLEPKYHAYCEYKEVADQYEEAR 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+ DL + E+ + + LE EI LLLPKD +DDK+ I+EIR GG Sbjct: 66 IML-EEESDPEMLDLVKTELEQLSDRKKALEEEIRLLLLPKDPNDDKNVIVEIRGAAGGE 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL+RMY RY WK E+L ++ GG+KE+V ++ G+G +SR+K+ESG H Sbjct: 125 EAALFAADLYRMYTRYGERMGWKSEILDTNTTGLGGFKEVVFSVQGQGAYSRLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+DV+I +D+RIDT +SG GGQ VNTT SA Sbjct: 185 RVQRVPTTESGGRIHTSTATVAVLPEAEEVDVEIQDKDLRIDTFCSSGPGGQSVNTTKSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V EKSQ +N+ +AM+VLRARL D +++ + + RK+Q+G+GDR Sbjct: 245 VRITHLPTGIVVSCQDEKSQIKNKEKAMRVLRARLLDQKQQEEEAKMADARKVQVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL+KL+ V+ G +D+I++ L+ QAK++ A Sbjct: 305 SERIRTYNFPQSRVTDHRIGLTLHKLDLVMDGDLDEIVDALVLEEQAKLLKKAE 358 >gi|261253598|ref|ZP_05946171.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891] gi|260936989|gb|EEX92978.1| peptide chain release factor 1 [Vibrio orientalis CIP 102891] Length = 362 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAKE--DDEEMREMAQEEIKDAKETIERLNDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W+VEV+SS++++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKKGWRVEVMSSNESEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIIQAEEAKRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +++P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLNEVMEGDVSCLVDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|291612728|ref|YP_003522885.1| peptide chain release factor 1 [Sideroxydans lithotrophicus ES-1] gi|291582840|gb|ADE10498.1| peptide chain release factor 1 [Sideroxydans lithotrophicus ES-1] Length = 360 Score = 287 bits (735), Expect = 1e-75, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +S +DA+ +L E A I P++ + + Sbjct: 1 MKSNISSKLAQLSERLDEVTRLLSSEEATRDMDAFRRLNRERAEIEPVVDLYHAWQACEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + G D ++R+ A+ E+ A + + +LE ++ LLPKD +D+++ LE+R Sbjct: 61 DIATAQEMAG----DPDMREFAEAEIKAGRERLEQLEVDLQKQLLPKDPNDERNVFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY R+A R+W+VE++S S + GGYKE++A I G+G +S +K Sbjct: 117 AGTGGDEAAIFAGDIFRMYVRFAERRRWQVEIISESPGEMGGYKEVIARIIGQGAYSVLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVA+LPEA E+ +V++ ++RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATETQGRIHTSACTVAILPEADEVGEVELNPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG +V +SQHQN+ +AM+VL AR+ D + + ++ +A RK Sbjct: 237 INKTDSAVRITHLPTGTVVECQDGRSQHQNKAQAMRVLAARIKDKQEQEAHSKIAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYK++ ++ G I ++ N L+ HQA+ + + Sbjct: 297 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKMDQIMDGDISELTNALMAEHQAEQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|307731136|ref|YP_003908360.1| peptide chain release factor 1 [Burkholderia sp. CCGE1003] gi|307585671|gb|ADN59069.1| peptide chain release factor 1 [Burkholderia sp. CCGE1003] Length = 360 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ +S D Y KLT E+A + P++ + +++ Q Sbjct: 1 MKTSMQHKLDQLTTRLAELNDLLSREDITSNRDQYRKLTREHAELGPVVEQYALWRQAMH 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+ +R+ A+ E+ A + + +L ++ +LLPKD +DD++ LEIR Sbjct: 61 DAATAQELLA----DASMREFAEEEIRAARERMEQLGGKLQTMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIGALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|89095600|ref|ZP_01168494.1| peptide chain release factor 1 [Bacillus sp. NRRL B-14911] gi|89089346|gb|EAR68453.1| peptide chain release factor 1 [Bacillus sp. NRRL B-14911] Length = 357 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 240/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V+ KL ++E + I + Y + + + QD Sbjct: 3 DRLQAVEDRYERLNELLSDPEIVNDTKKLREYSKEQSGIQETVEAYREYKEVRGQYQDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+R++ + E+ +E + LE + LL+PKD +DDK+ I+EIR GG Sbjct: 63 AML-EEKLDAEMREMVKEEIGELEDRVEALEARLKILLIPKDPNDDKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY R+A ++ WK +V+ +S GGYKEI+ I+G G FS++KFE+G H Sbjct: 122 EAALFAGDLYRMYSRFAEVQGWKTDVIEASSTGVGGYKEIIFIINGNGAFSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++++I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIEIHDKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG +V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHLPTGTVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDQQRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +D++I+ L+ Q+ + AS+ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDEVIDALIMEEQSAKLKEASD 356 >gi|325660746|ref|ZP_08149374.1| peptide chain release factor 1 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472820|gb|EGC76030.1| peptide chain release factor 1 [Lachnospiraceae bacterium 4_1_37FAA] Length = 356 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 259/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ EI + E + + KL +E A ++PI+ + Y + KQ D Sbjct: 3 DKLEDLLIRYEEIMGELQEPDVANDQERFRKLMKEQADLAPIVEAYTEYKKAKQSIADSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+R+LA+ E+ + +K + ELE+E+ LLLPKD +DDK+ ++EIRAG GG Sbjct: 63 EML-EIESDEEMRELAKEELSSSKKRVEELEHELKILLLPKDPNDDKNIMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF +++RMY YA ++WK E++S ++N GG+KE+V +SG+GV+SRMK+ESGVH Sbjct: 122 ESALFAAEVYRMYVHYAESKRWKTEMISVNENGIGGFKEVVFMVSGQGVYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIEEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQSAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D++I+ L+ A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSILNGDLDEVIDSLIAADQAAKLSNMNE 356 >gi|210608516|ref|ZP_03287892.1| hypothetical protein CLONEX_00071 [Clostridium nexile DSM 1787] gi|210153007|gb|EEA84013.1| hypothetical protein CLONEX_00071 [Clostridium nexile DSM 1787] Length = 358 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 177/359 (49%), Positives = 257/359 (71%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ DL RF E+ + E + + KL +E + ++PI+ + Y KQ Sbjct: 1 MDMFDKLDDLLIRFEELMSELQEPDVANDQNRFRKLMKEQSDLAPIVEAYNEYKSAKQAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D ++ + SD E+R+LA+ E+ + +K + ELE+E+ LLLPKD +DDK+ ++EIRAG Sbjct: 61 TDSEEML-EMESDEEMRELAKEELSSSKKRVEELEHELKILLLPKDPNDDKNIMVEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG E+ALF +++RMY YA R WK E++S S+N GG+KE+V +SG+GV+SRMK+E Sbjct: 120 AGGDESALFAAEVYRMYVHYAESRHWKTEMISFSENGIGGFKEVVFMVSGQGVYSRMKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNT Sbjct: 180 SGVHRVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG Sbjct: 240 TDSAVRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQSAEAEARRSQIG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSE+IRTYNF QGR+T+HRI LTLYK++ ++ G +D+II+ L+ A QA + + +E Sbjct: 300 TGDRSEKIRTYNFPQGRVTEHRIKLTLYKIDNIMNGDLDEIIDSLIAADQAAKLANMNE 358 >gi|210623300|ref|ZP_03293717.1| hypothetical protein CLOHIR_01667 [Clostridium hiranonis DSM 13275] gi|210153701|gb|EEA84707.1| hypothetical protein CLOHIR_01667 [Clostridium hiranonis DSM 13275] Length = 355 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 179/356 (50%), Positives = 249/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ L++ + ++ ++S+ ++ + K +E+A + PII K Y + Sbjct: 1 MLKKLGVLEDTYKDLTEKISDPEIINDQKVWQKYMKEHADLEPIIMKYREYKAVLDAIAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R+LA++E+ +E ++ LE E+ LL+PKD +D+K+ I+EIR G G Sbjct: 61 SKEILQEE-SDEELRELAKMELSDMESQVEPLEEELKLLLVPKDPNDEKNVIVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL RMY RYA + WKV +LSS++ GGYKE+ I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLLRMYSRYAERKGWKVSMLSSNETGVGGYKEVSFMIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE+ GR+HTS ATVAVLPE +++V+I DIRID RASG+GGQ VNTTD Sbjct: 180 VHRVQRIPSTESGGRIHTSTATVAVLPEVEDVEVEINDNDIRIDVFRASGNGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG +V EKSQ +N+ +AMKVL+ARLYD E SA RK Q+G+G Sbjct: 240 SAVRITHLPTGEVVSCQDEKSQLKNKEKAMKVLKARLYDRALADQQKEISAERKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRI+DHRINLTLYKL+ L G ID++I+ L+T Q + + + + Sbjct: 300 DRSERIRTYNFPQGRISDHRINLTLYKLDSFLDGDIDEMIDALITVDQTEKMTAIN 355 >gi|313107327|ref|ZP_07793522.1| peptide chain release factor 1 [Pseudomonas aeruginosa 39016] gi|310880024|gb|EFQ38618.1| peptide chain release factor 1 [Pseudomonas aeruginosa 39016] Length = 360 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQTRFRAYSREYAEVEPVILAFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+RDLA+ EV + L + + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPELRDLAEEEVAEARGRLAALGDSLQRMLLPKDPNDSRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE LS ++ + GGYKE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERQGWRVETLSENEGEHGGYKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQATIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIP+GI+V E+SQH+NR +AM L A+L D ++ ++ RKL Sbjct: 239 VNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMAWLAAKLNDQQQAAAQQAIASTRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V++G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVMEGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|295677813|ref|YP_003606337.1| peptide chain release factor 1 [Burkholderia sp. CCGE1002] gi|295437656|gb|ADG16826.1| peptide chain release factor 1 [Burkholderia sp. CCGE1002] Length = 360 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 251/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S ++D Y KLT E+A + P++ ++ Q + Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITANLDQYRKLTREHAELGPVVEHYGLWRQAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+ +RD A+ E+ A + L E+ +LLPKD +D+++ LEIR Sbjct: 61 DAATAQELLA----DASMRDFAEEEIRAARDRMETLGVELQKMLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGY+E++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYREVIVRIAGDAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQTHEQQTKEAATRKN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G ++++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLEELIAALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|253580116|ref|ZP_04857383.1| peptide chain release factor 1 [Ruminococcus sp. 5_1_39B_FAA] gi|251848635|gb|EES76598.1| peptide chain release factor 1 [Ruminococcus sp. 5_1_39BFAA] Length = 358 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 248/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ + E D + KL +E + + PI+ Y + K+ QD Sbjct: 3 DKLDDLLIRFEEVLNELGEPGVTDNQEHFQKLMKEQSDLQPIVDAYREYKKNKETIQDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + D ++R++ + E+ +K + ELE+E+ LLLPKD +D+K+ I+EIRAG GG Sbjct: 63 SML-EEEKDEDMREMLKEELSEAKKNVEELEHELKILLLPKDPNDNKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA R+WK E++S ++N GG+KE+ I+G G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESRRWKTEMMSLNENGIGGFKEVTFMITGAGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID + + D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLY++E + + + R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQHDAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL++LE VL G +D+II+ L+ A QA + + + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHRLENVLNGDLDEIIDSLIAADQAAKLSNLQD 356 >gi|116052810|ref|YP_793127.1| peptide chain release factor 1 [Pseudomonas aeruginosa UCBPP-PA14] gi|218893762|ref|YP_002442631.1| peptide chain release factor 1 [Pseudomonas aeruginosa LESB58] gi|254244443|ref|ZP_04937765.1| peptide chain release factor 1 [Pseudomonas aeruginosa 2192] gi|296391486|ref|ZP_06880961.1| peptide chain release factor 1 [Pseudomonas aeruginosa PAb1] gi|122257179|sp|Q02G09|RF1_PSEAB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739119|sp|B7V0L1|RF1_PSEA8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|115588031|gb|ABJ14046.1| peptide chain release factor 1 [Pseudomonas aeruginosa UCBPP-PA14] gi|126197821|gb|EAZ61884.1| peptide chain release factor 1 [Pseudomonas aeruginosa 2192] gi|218773990|emb|CAW29805.1| peptide chain release factor 1 [Pseudomonas aeruginosa LESB58] Length = 360 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQTRFRAYSREYAEVEPVILAFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+RDLA+ EV + L + + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPELRDLAEEEVAEARGRLAALGDSLQRMLLPKDPNDSRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE LS ++ + GGYKE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERQGWRVETLSENEGEHGGYKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIP+GI+V E+SQH+NR +AM L A+L D ++ ++ RKL Sbjct: 239 VNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMAWLAAKLNDQQQAAAQQAIASTRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V++G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVMEGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|170696251|ref|ZP_02887383.1| peptide chain release factor 1 [Burkholderia graminis C4D1M] gi|170138811|gb|EDT07007.1| peptide chain release factor 1 [Burkholderia graminis C4D1M] Length = 360 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 255/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R AE+ +S ++D Y KLT E+A + P++ + +++ Q Sbjct: 1 MKTSMQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVEQYALWRQAMH 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +D +R+ A+ E+ A + + +L E+ +LLPKD +DD++ LEIR Sbjct: 61 DAATAQELL----TDISMREFAEEEIRAARERMEQLGGELQKMLLPKDPNDDRNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I+ L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELISALVSEHQAELLASL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|115522190|ref|YP_779101.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisA53] gi|122298096|sp|Q07VB3|RF1_RHOP5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|115516137|gb|ABJ04121.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas palustris BisA53] Length = 359 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 188/359 (52%), Positives = 262/359 (72%), Gaps = 2/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L R A +E ++ + + Y+K+T E A ++P++ + Y Q + E Sbjct: 1 MSRLPETKLDILLARHAALEAQLLGPVNSEHYVKITRELAELNPLVDAVKAYRQVRDEIG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++I D +SD E+R +AQ E A+E+ EL +I LLPKD DD++ +LE+RAGT Sbjct: 61 DIDSLIADPDSDPELRAMAQAEHAALEEHEAELAQQIRIALLPKDAMDDRNVMLEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GG+KEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGAAGGFKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAV+PE E+DV+I +D++IDTMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVMPEVEEVDVEIKQDDLKIDTMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD E++R+ RSA RK ++GS Sbjct: 241 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRLDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++++ L T +QA + + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTDYQAAQLAAQGD 359 >gi|34495535|ref|NP_899750.1| peptide chain release factor 1 [Chromobacterium violaceum ATCC 12472] gi|46576724|sp|Q7P1Y2|RF1_CHRVO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|34101390|gb|AAQ57759.1| peptide chain release factor I [Chromobacterium violaceum ATCC 12472] Length = 358 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++ ++A+ KLT E+A ++P++ S Y Q + Sbjct: 1 MKASIAARLAQLADRLEEVTHLLASETATQDMEAFKKLTREHAELTPVVETFSAYRQCEG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+++ AQ E+ + ++ L+ E+ LLLPKD +DDK+ LEIR Sbjct: 61 DIAAAEDMLA----DPEMKEFAQAEIAEGKDKLEALDLELQKLLLPKDPNDDKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DL RMY RYA +W+VE++S+S++D GGYKE++ + G+G +SR+K Sbjct: 117 AGTGGDEAALFAADLLRMYTRYAERNRWQVEIVSASESDLGGYKEVIVRLVGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+ +V + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMAEADEIAEVVLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+ +SQH N+ AM+VL AR+YD++ + + +A RK Sbjct: 237 INKTDSAVRITHIPTGIVAECQDGRSQHANKASAMQVLAARIYDIQLREKNQKEAAERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYKL+YV+ G + ++ + L+ QA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKLDYVMDGDLAELTDALIAEQQAELLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|23012458|ref|ZP_00052537.1| COG0216: Protein chain release factor A [Magnetospirillum magnetotacticum MS-1] Length = 361 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 183/359 (50%), Positives = 252/359 (70%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M + ++ + R + ++++ + ++ ++L+ E + + +++ I Y + Sbjct: 1 MTPIPSDRLDAILARHEIVTAQLADGSAEAESIVQLSRELSELDGVVAAIHAYRAAEANL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I + D E+R LA E E+ + + + +LLPKD D+KS ILEIRAG Sbjct: 61 AGIRALIDEPGGDPEMRALAAEEKPDAEEALEQAHRALQLMLLPKDAADEKSAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY +YA + W+VEV+S S+ GGY+E+VA + GR VFSR+KFE Sbjct: 121 TGGDEAALFAGDLFRMYAKYAESKGWRVEVISESEGTVGGYREVVAEVKGRSVFSRLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+DV I D++IDTMRA G+GGQHVN Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDVVINEADLKIDTMRAQGAGGQHVNK 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITH+PTG++V E+SQH+NR RAM +LRARL+D ER + R+A+RK Q+G Sbjct: 241 TESAIRITHLPTGVVVFVQEERSQHKNRARAMALLRARLFDAERSAKDSARAADRKAQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE V+ G +D++I+ L+T HQA+++ + Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAGPALDEVIDALVTEHQAELLAAEG 359 >gi|315127042|ref|YP_004069045.1| peptide chain release factor 1 [Pseudoalteromonas sp. SM9913] gi|315015556|gb|ADT68894.1| peptide chain release factor 1 [Pseudoalteromonas sp. SM9913] Length = 361 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++++ L R+ E++ +S+ + + L++EY+ + ++ Y Q ++ Sbjct: 1 MKESVYRKLETLVERYEEVQALLSDPSVISDQNRFRTLSKEYSELEEVVKTFLAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D SD E+R++AQ E + +I LE++I L+LPKD D+ + LE+R Sbjct: 61 DLSSAEEMLKD--SDPEMREMAQEEYKEAKAQISTLEDDIQVLMLPKDPKDNNNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA +KWKVEV+++++ + GGYKE++A ISG GV+ ++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAETKKWKVEVVTTNEGEHGGYKEVIANISGEGVYGQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+ ++I DI++DT RASG+GGQH Sbjct: 179 FESGVHRVQRVPETESQGRVHTSACTVAVMAEVPEAEAIEINTADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL ARL E ++ ++ R+ Sbjct: 239 VNKTDSAIRITHLPTGVVVECQDERSQHKNRAKAMSVLAARLQQAEDEKRHAAEASERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLY+L V+ G + ++ PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYRLNEVVAGDLGAVVEPLMQEHQADLLAAM 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|194016506|ref|ZP_03055120.1| peptide chain release factor 1 [Bacillus pumilus ATCC 7061] gi|194011979|gb|EDW21547.1| peptide chain release factor 1 [Bacillus pumilus ATCC 7061] Length = 355 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 241/355 (67%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y + + Sbjct: 1 MLDRLKSIEERYEKLNEYLSDPEVVNDPKKLREYSKEQSDIQETVEVYRQYRAAYDQLSE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D+E+RD+ + E+ + +E LE+E+ LL+PKD +D+K+ I+E+R G Sbjct: 61 AKAML-EEKLDAEMRDMVKEEISELTEETERLEDELKILLIPKDPNDNKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA ++ WK EV+ ++ GGYKEI+ ISG+G +SR+KFE+G Sbjct: 120 GEEAALFAGNLYRMYSRYAEMQGWKTEVMEANVTGTGGYKEIIFMISGKGAYSRLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDIRVDTFTSSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQREAQAEYDQTRKSAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D++I+ L+ QA+ + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVIDALIMEDQARKLQNA 354 >gi|170761198|ref|YP_001785468.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch Maree] gi|238688740|sp|B1KSR1|RF1_CLOBM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169408187|gb|ACA56598.1| peptide chain release factor 1 [Clostridium botulinum A3 str. Loch Maree] Length = 358 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++AQ E+ + ++ +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLKEE-SDKELREMAQEEIKELTLKLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ + G+G +SR+K+ESG Sbjct: 120 GEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID+ I L+T QA+ + + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEAIEALVTEDQAEKMKNLG 355 >gi|219670829|ref|YP_002461264.1| peptide chain release factor 1 [Desulfitobacterium hafniense DCB-2] gi|254790878|sp|B8FZ76|RF1_DESHD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219541089|gb|ACL22828.1| peptide chain release factor 1 [Desulfitobacterium hafniense DCB-2] Length = 355 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 165/356 (46%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++ R+ E+ +S+ + + K + A ++ I+ Y + + ++ Sbjct: 1 MQRKLIEIERRYDELTQLLSDPEVIGNQSEWQKYAKAQAGMTDIVEAFREYSEVVKHLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E +++A++E+ + ++ ELE ++ LLLPKD +DDK+ I+EIRAG G Sbjct: 61 TQGLL-EEKLDPEFKEMAELELEELTEKRDELEEKMRILLLPKDPNDDKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY +YA + W+ E+LS+S D GG+KEI+ I G+G +S++KFESG Sbjct: 120 GEEAALFAGDLYRMYTKYAEHQGWRTELLSASYTDIGGFKEIIFLIEGQGAYSKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS TVAVLPEA E+DV I D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPTTESGGRIHTSTTTVAVLPEAEEVDVAINPNDLRIDIFCSSGPGGQSVNTTQ 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG +V EKSQ +N+ +A++VLRARL + ++ E ++ R+ Q+G+G Sbjct: 240 SAVRITHVPTGTVVSCQDEKSQLKNKEKALRVLRARLLERAQEEAMGELASERRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTL++L+ +L G +D++IN L+T QA+ + S + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLHRLDSILLGELDEVINALITTDQAERLKSEA 355 >gi|330815385|ref|YP_004359090.1| Peptide chain release factor 1 [Burkholderia gladioli BSR3] gi|327367778|gb|AEA59134.1| Peptide chain release factor 1 [Burkholderia gladioli BSR3] Length = 360 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 182/362 (50%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L NR AE+ +S +D Y KLT E+A I P++ + + + Sbjct: 1 MKTSMQSKLDQLSNRLAELNELLSRENVTADLDQYRKLTREHAEIGPVVEHYAQWRLARG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +E ++ SD+ +R+ A+ E+ + + LE E+ +LLP+D +D+++ LEIR Sbjct: 61 DEATAQELL----SDAAMREFAEEEIREARERMARLEAELQKMLLPRDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA ++W+VE++S S +D GGYKE++ I+G+G +SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAERQRWQVEMMSESASDLGGYKEVIVRIAGQGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIAEVEINPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK Sbjct: 237 INKTDSAVRVTHLPTGIVVECQDDRSQHKNKERALKVLAARIKDKQYHEQHAKEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I L++ HQA+++ S Sbjct: 297 LIGSGDRSERIRTYNFPQGRMTDHRINLTLYKLEALMDGDLDEMIATLVSEHQAELLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|134093473|ref|YP_001098548.1| peptide chain release factor 1 [Herminiimonas arsenicoxydans] Length = 356 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R AE+ + + + ++D Y K+T E+A + P+++ Y Q + +D Sbjct: 4 KLDQLTERLAELNVLLMQEDATSNMDNYRKMTREHAELGPLVALYGNYTQADNDIKDAQG 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD ++++ AQ E+ A + + +LE ++ +LLPKD +D+++ LEIRAGTGG E Sbjct: 64 ML----SDPDMKEFAQEEMAAAKTRMEQLELDLQKMLLPKDPNDERNIFLEIRAGTGGDE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +ALF GDL RMY R+A +W++E++S S ++ GGYKE++ I G G +S++KFESG HR Sbjct: 120 SALFAGDLLRMYTRFAERNRWQIEMVSESASEVGGYKEVIVRIVGNGAYSKLKFESGGHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE GR+HTSA TVAV+PEA E DV+I D+RIDT RASG+GGQH+N TDSA Sbjct: 180 VQRVPATETQGRIHTSACTVAVMPEADEVEDVNINPADLRIDTYRASGAGGQHINKTDSA 239 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V ++SQH+N+ A+KVL AR+ DV+ + ++ +A RK IGSGDR Sbjct: 240 VRITHIPTGIVVECQDDRSQHKNKASALKVLAARIKDVQLREQQSQEAATRKSLIGSGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRINLTLYKL++++ G + ++ N L HQA ++ + + Sbjct: 300 SERIRTYNFPQGRMTDHRINLTLYKLDFIMDGDLTELTNALAAEHQADLLAALGD 354 >gi|118581059|ref|YP_902309.1| peptide chain release factor 1 [Pelobacter propionicus DSM 2379] gi|166223584|sp|A1ASD1|RF1_PELPD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118503769|gb|ABL00252.1| bacterial peptide chain release factor 1 (bRF-1) [Pelobacter propionicus DSM 2379] Length = 354 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 256/355 (72%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I +L+ R+ E+E +S+ + + KL+ E+A ++ +++ Y + +E + Sbjct: 3 DKIEELERRYQELEALLSDPAVISNQPEFRKLSREHADLTGLVAAYRRYRRVLEEMEGNR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D +++++A+ E+ +E+E LE EI LLLP+D +DDKS ILEIRAGTGG Sbjct: 63 ELLA----DVDMKEMAEEELKVLEEEKERLEGEIQMLLLPRDPNDDKSVILEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY R+A + +WKVE +S+S+++ GG+KEI+A++ G GVF+++K+ESG H Sbjct: 119 ESALFAGDLFRMYSRFADVNRWKVETISASESERGGFKEIIASVEGEGVFAKLKYESGTH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVA++ EA ++D+DI D++ID R+SG+GGQHVNTTDSA Sbjct: 179 RVQRVPETEAQGRIHTSACTVAIMAEAEDVDIDINPTDLKIDVYRSSGAGGQHVNTTDSA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG +V E+SQ +NR +AMKVL+ R+ D ++ +A+RK Q+GSGDR Sbjct: 239 VRITHLPTGTVVACQEERSQIKNRAKAMKVLKTRIMDSIQQEQNARMAADRKQQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I++ L +Q + + + SE Sbjct: 299 SERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIAEIVDALRAHYQMEALKAQSE 353 >gi|15599860|ref|NP_253354.1| peptide chain release factor 1 [Pseudomonas aeruginosa PAO1] gi|107099668|ref|ZP_01363586.1| hypothetical protein PaerPA_01000686 [Pseudomonas aeruginosa PACS2] gi|12231016|sp|P42806|RF1_PSEAE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|9950920|gb|AAG08052.1|AE004880_8 peptide chain release factor 1 [Pseudomonas aeruginosa PAO1] Length = 360 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQTRFRAYSREYAEVEPVILAFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+RDLA+ EV + L + + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPELRDLAEEEVAEARGRLAALGDSLQRMLLPKDPNDSRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W++E LS ++ + GGYKE++A + G V++++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERQGWRIETLSENEGEHGGYKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIP+GI+V E+SQH+NR +AM L A+L D ++ ++ RKL Sbjct: 239 VNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMAWLAAKLNDQQQAAAQQAIASTRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V++G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVMEGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|296159488|ref|ZP_06842312.1| peptide chain release factor 1 [Burkholderia sp. Ch1-1] gi|295890196|gb|EFG69990.1| peptide chain release factor 1 [Burkholderia sp. Ch1-1] Length = 356 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 176/358 (49%), Positives = 252/358 (70%), Gaps = 9/358 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L R AE+ +S ++D Y KLT E+A + P++ +++ Q + Sbjct: 1 MQRKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVEHYALWRQAMNDAAT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D+ +RD A+ E+ A + + +L E+ +LLPKD +DD++ LEIRAGTG Sbjct: 61 AQELLA----DASMRDFAEEEIRAARERMDKLGAELQKMLLPKDPNDDRNIFLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++KFESG Sbjct: 117 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH+N T Sbjct: 177 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK IGS Sbjct: 237 DSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKSLIGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S + Sbjct: 297 GDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIAALVSEHQAELLASLGD 354 >gi|229826190|ref|ZP_04452259.1| hypothetical protein GCWU000182_01562 [Abiotrophia defectiva ATCC 49176] gi|229789060|gb|EEP25174.1| hypothetical protein GCWU000182_01562 [Abiotrophia defectiva ATCC 49176] Length = 357 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I L R+ E+ ++ + + L +E + + PI+ K Y ++ +D Sbjct: 3 ESIETLAGRYKEVTDELASGMAAADPNKFRNLMKEQSDLQPIVEKYKAYKANNEQIEDCL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD E+++LA+ E+ + + E E E+ LLLPKD +DDK+ I+EIRAGTGG Sbjct: 63 RMISEE-SDPELKELAREELAEAKAAVPEFEKELKVLLLPKDKNDDKNVIVEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F +L+RMY +YA +WK E+LS ++N GG+KE+ I+G+G FS++K+ESG H Sbjct: 122 EAAIFASELYRMYCKYAENNRWKPEILSFNENGLGGFKEVTFLINGKGAFSKLKYESGTH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++G++ TSAATVA+LPEA E+DV+I DI+ D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPVTESNGKLQTSAATVAILPEAEEVDVNIDPNDIKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +AMKVLR+RLY++E ++ E +ANRK Q+GSGDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKAMKVLRSRLYELECEKAHAEEAANRKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI T + ++ V+ G + +II L+ A Q + + + E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKFTTHNIDGVMGGDLTEIIENLIVADQTEKLAAMGE 356 >gi|238917365|ref|YP_002930882.1| peptide chain release factor RF-1 [Eubacterium eligens ATCC 27750] gi|259585239|sp|C4Z1S4|RF1_EUBE2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238872725|gb|ACR72435.1| peptide chain release factor RF-1 [Eubacterium eligens ATCC 27750] Length = 357 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D NR+ +I + V+ + KL +E ++++P+I + Y K+ +D Sbjct: 3 DRLEDTVNRYEDITAELGNPDVVNDQEKFKKLMKEQSSLAPLIETYTEYKNCKKNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D +D E++++A+ E+ + + ELE+E+ LLLPKD +DDK ++EIRAG GG Sbjct: 63 AIL-DEETDEELKEMAKEELNESKARVEELEHELKILLLPKDPNDDKDIVVEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +LFRMY YA R WKVEVLS + GG KE+ + G+G +S MK+ESGVH Sbjct: 122 EAALFAAELFRMYVHYAQARGWKVEVLSGDETGIGGMKEVEFMVKGQGAYSIMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GR+ TS A+VAV+PEA E+D+ I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRIPVTESNGRIQTSTASVAVMPEAEEVDIHIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDIETQKAHDAEADARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +E+IRTYNF QGR+TDHRI LTLYKL+ ++ G I DII+ + A QA + E Sbjct: 302 AEKIRTYNFPQGRVTDHRIGLTLYKLDKIMDGDIQDIIDACIAADQAAKLAKMGE 356 >gi|157273346|gb|ABV27245.1| peptide chain release factor 1 [Candidatus Chloracidobacterium thermophilum] Length = 357 Score = 287 bits (733), Expect = 2e-75, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L+ ++ + ++S+ V Y KL ++++ ++ ++ K Y + Sbjct: 3 DKLKALEEKYEALTAQLSDPEVVADAARYAKLAKQHSELTEVVEKFREYQTIEANLASAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ LA+ E+ +EK+ + + E+ LL PKD +D K+ +LEIRAGTGG+ Sbjct: 63 ELLNEAE-DAEMVALAREEIALLEKQRAQCQLELEQLLTPKDPNDRKNVLLEIRAGTGGN 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF G+L RMY RYA R W+V++L S ++ GG KE + I G GV+SR+K ESGVH Sbjct: 122 EASLFAGELLRMYLRYAERRGWRVQILDESLSEVGGLKEGIVLIEGTGVYSRLKHESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GR+HTS TVAVLPEA E+D++I +D+RIDT +SG GGQ VNTT SA Sbjct: 182 RVQRVPVTESAGRIHTSTVTVAVLPEAEEVDIEIDPKDVRIDTFCSSGPGGQSVNTTYSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V+ EKSQ +NR +A ++LRARL ++ER++ + R+ Q+G+G+R Sbjct: 242 VRLTHLPTGLVVSIQDEKSQIKNREKAFRILRARLLELERQKQHEAIAGERRAQVGTGER 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF + R+TDHRI LTL++L+ ++ G +D +I+PL+T QA + S + Sbjct: 302 SEKIRTYNFKENRVTDHRIGLTLHQLDTIMDGELDGLIDPLITHFQALKMQSEA 355 >gi|296331340|ref|ZP_06873812.1| peptide chain release factor 1 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676326|ref|YP_003867998.1| peptide chain release factor 1 [Bacillus subtilis subsp. spizizenii str. W23] gi|296151455|gb|EFG92332.1| peptide chain release factor 1 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414570|gb|ADM39689.1| peptide chain release factor 1 [Bacillus subtilis subsp. spizizenii str. W23] Length = 356 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 163/356 (45%), Positives = 235/356 (66%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y ++ D Sbjct: 1 MLDRLKSIEERYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVDVYRQYRDASEQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D+E+RD+ + E+ ++KE L + LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAML-EEKLDAEMRDMVKEEISELQKETETLSERLKVLLIPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA L+ WK EV+ +S GGYKEI+ I+G G +S++K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAELQGWKTEVMEASVTGTGGYKEIIFMITGSGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +GSG Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+++ L+ QA + A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEALIVEDQASKLQQAE 355 >gi|85860527|ref|YP_462729.1| peptide chain release factor 1 [Syntrophus aciditrophicus SB] gi|119361624|sp|Q2LWU9|RF1_SYNAS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|85723618|gb|ABC78561.1| bacterial peptide chain release factor 1 (rf-1) [Syntrophus aciditrophicus SB] Length = 357 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 250/354 (70%), Gaps = 7/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++++R+ E+E +S+ V Y K +E+A + ++ Y++ ++ Sbjct: 4 KLKEVESRYLELEKLLSDPTVVTRQSLYQKYAKEHADLRDLVEVFRKYEKVGAAIEEAQQ 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++A+ E+ + + + LE + LLLP+D +DD++ LEIRAGTGG E Sbjct: 64 LLR--GDDEELKEIAREELPELRQHLAGLEERLKVLLLPRDLNDDRNVFLEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDN-DDGGYKEIVATISGRGVFSRMKFESGVH 183 A LFVGDLFRMY RYA +R+WKVEV+SS+ + GG+KEI+A+I+G+G +S++K+ESGVH Sbjct: 122 AGLFVGDLFRMYARYAEMRRWKVEVISSTPSSGVGGFKEIIASIAGQGAYSQLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVA++PEA E++V I D+RID +SG GGQ VNTTDSA Sbjct: 182 RVQRVPVTEAQGRIHTSAVTVAIMPEADEVEVTIDPNDLRIDVFHSSGHGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V EKSQ +N+ +A+KVLRARL D+ K+ ++E S RK Q+GSGDR Sbjct: 242 VRITHLPTGLVVSCQDEKSQLKNKAKALKVLRARLLDIMVKKQSDEISEARKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHR+ LTLY LE +L G I + I+ L QA+ + S Sbjct: 302 SERIRTYNFPQGRVTDHRVGLTLYSLENILGGDIQEFIDALTAYFQAESLKQQS 355 >gi|89897680|ref|YP_521167.1| peptide chain release factor 1 [Desulfitobacterium hafniense Y51] gi|89337128|dbj|BAE86723.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 360 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 247/357 (69%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 L +++ +++ R+ E+ +S+ + + K + A ++ I+ Y + + + Sbjct: 5 LMQRKLIEIERRYDELTQLLSDPEVIGNQSEWQKYAKAQAGMTDIVEAFREYSEVVKHLE 64 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + D E +++A++E+ + ++ ELE ++ LLLPKD +DDK+ I+EIRAG Sbjct: 65 ETQGLL-EEKLDPEFKEMAELELEELTEKRDELEEKMRILLLPKDPNDDKNVIMEIRAGA 123 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDL+RMY +YA + W+ E+LS+S D GG+KEI+ I G+G +S++KFES Sbjct: 124 GGEEAALFAGDLYRMYTKYAEQQGWRTELLSASYTDIGGFKEIIFLIEGQGAYSKLKFES 183 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTS TVAVLPEA E+DV I D+RID +SG GGQ VNTT Sbjct: 184 GVHRVQRVPTTESGGRIHTSTTTVAVLPEAEEVDVAINPNDLRIDIFCSSGPGGQSVNTT 243 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVRITH+PTG +V EKSQ +N+ +A++VLRARL + ++ E ++ R+ Q+G+ Sbjct: 244 QSAVRITHVPTGTVVSCQDEKSQLKNKEKALRVLRARLLERAQEEAMGELASERRSQVGT 303 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRI LTL++L+ +L G +D++IN L+T QA+ + S + Sbjct: 304 GDRSERIRTYNFPQGRVTDHRIGLTLHRLDSILLGELDEVINALITTDQAERLKSEA 360 >gi|157694096|ref|YP_001488558.1| peptide chain release factor 1 [Bacillus pumilus SAFR-032] gi|166977360|sp|A8FID1|RF1_BACP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157682854|gb|ABV63998.1| peptide chain release factor RF1 [Bacillus pumilus SAFR-032] Length = 355 Score = 287 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 241/355 (67%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y + + Sbjct: 1 MLDRLKSIEERYEKLNEYLSDPEVVNDPTKLREYSKEQSDIQETVEVYRQYRAAYDQLSE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E+RD+ + E+ + +E LE+E+ LL+PKD +D+K+ I+E+R G Sbjct: 61 AKAMLEDK-LDAEMRDMVKEEISELTEETERLEDELKILLIPKDPNDNKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA ++ WK EV+ +S GGYKEI+ ISG+G +S++KFE+G Sbjct: 120 GEEAALFAGNLYRMYSRYAEMQGWKTEVMEASVTGTGGYKEIIFMISGKGAYSKLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDIRVDTFTSSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQREAQAEYDQTRKSAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D++I+ L+ QA+ + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVIDALIMEDQARKLQNA 354 >gi|307131078|ref|YP_003883094.1| peptide chain release factor RF-1 [Dickeya dadantii 3937] gi|306528607|gb|ADM98537.1| peptide chain release factor RF-1 [Dickeya dadantii 3937] Length = 361 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q + + Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQRWQQTQDDLATAEL 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RDLAQ E+ + ELE ++ LLLPKD DD++ C LEIRAGTGG E Sbjct: 68 ML----DDPEMRDLAQDELKTAKAASEELEQQLQVLLLPKDPDDERGCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+WKVE++S+SD + GGYKE++A ++G G + ++KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWKVEIMSASDGEHGGYKEMIAKVAGDGAYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPEVPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLAARIRAAEMQKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + +E Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIQPIVQEYQADQLAALAE 358 >gi|271500557|ref|YP_003333582.1| peptide chain release factor 1 [Dickeya dadantii Ech586] gi|270344112|gb|ACZ76877.1| peptide chain release factor 1 [Dickeya dadantii Ech586] Length = 361 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E++ + E + D + L+ EYA ++ I + Q + Sbjct: 1 MKSSIVAKLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFERWQQTQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+RDLAQ E+ A + +LE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIETAELML----DDPEMRDLAQDELQAAKVASEDLEQQLQVLLLPKDPDDERGCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+WKVE++S+SD + GGYKE++A + G G + ++K Sbjct: 117 AGTGGDEAALFAGDLFRMYSRYAESRRWKVEIMSASDGEHGGYKEVIAKVVGDGAYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEVPEAELPDINPSDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + E ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLAARIRAAEMHKRQQEEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRIRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIQPIVQEYQADQLAAL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|228470795|ref|ZP_04055643.1| peptide chain release factor 1 [Porphyromonas uenonis 60-3] gi|228307468|gb|EEK16473.1| peptide chain release factor 1 [Porphyromonas uenonis 60-3] Length = 368 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 226/361 (62%), Gaps = 12/361 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L R E+E +++ + + L++EY + I+ + Y Q ++++ + Sbjct: 7 RIEALVARHEELETLITDPSVIADGRRFATLSKEYTHLGEILKAGAQYKQLLTQQEEAES 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D +SD E++ +A+ + ++E ++E EI LLLP D +DDK+ ILE+RAGTGG E Sbjct: 67 TLQDSDSDEELKAMARELLAEAKEESPKMEEEIKLLLLPNDPEDDKNAILELRAGTGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RY + W V V S ++ GGYKEIV ++G GV+ +K+ESGVHR Sbjct: 127 AALFAGDLFRMYSRYCETKGWNVTVSSYTEGGTGGYKEIVLNVTGTGVYGTLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GR+HTSAATVAVLPEA + +V+I +I+ DT R+SG+GGQ+VN +S V Sbjct: 187 VQRVPQTETQGRIHTSAATVAVLPEADKFEVNINEGEIKWDTFRSSGAGGQNVNKVESGV 246 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + + + + Q +N+ RA+ LR +YD E ++ +E ++ RK Sbjct: 247 RLHYPWRNPNTGVVEDITIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDEIASRRKT 306 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYNF QGR+TDHRI LT++ L VL G + II+ L+ A + + A Sbjct: 307 MVSTGDRSAKIRTYNFPQGRVTDHRIGLTVHNLPGVLGGDLQPIIDALIVAENTERLKEA 366 Query: 356 S 356 + Sbjct: 367 A 367 >gi|253681032|ref|ZP_04861835.1| peptide chain release factor 1 [Clostridium botulinum D str. 1873] gi|253562881|gb|EES92327.1| peptide chain release factor 1 [Clostridium botulinum D str. 1873] Length = 357 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 249/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +N++ E+ +++S+ + + + KL +E+A + I++K Y K+E + Sbjct: 1 MLDKLDFTENKYEELSIKISDPSVMANQNEWRKLCKEHAELETIVTKYREYKNNKEELES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + N D +++++ Q E+ +E+ I E E+ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKELLSEEN-DRDMKEMIQEEIKTLEENIVRDEEELKILLLPKDPNDDKNVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA WK E++S+++ D GG+KE+V + G +S+MKFESG Sbjct: 120 GDEAALFAANLFRMYTRYAERHGWKTELMSTNETDIGGFKEVVFMLRGDSAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D+ I DIR+D RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V EKSQ +N+ +A+KVL+ARLY+ A SA+RK Q+G+G Sbjct: 240 SAVRMTHIPTGIVVSCQDEKSQLKNKEKALKVLKARLYEKAEAERAASISADRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+T+HRI +TLYKLE L G +++II+ L+TA QA+ + + Sbjct: 300 DRSERIRTYNYPQGRVTEHRIGVTLYKLEAFLDGDMEEIIDALITAEQAEKMKAMG 355 >gi|331090678|ref|ZP_08339527.1| peptide chain release factor 1 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400092|gb|EGG79743.1| peptide chain release factor 1 [Lachnospiraceae bacterium 2_1_46FAA] Length = 356 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 258/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF EI + E + + KL +E A ++PI+ + Y KQ D Sbjct: 3 DRLEDLIIRFEEIMGELQEPDVANDQNRFRKLMKEQADLTPIVDAYNEYKSAKQAIADSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+R+LA+ E+ A +K + ELE+E+ LLLPKD +DDK+ ++EIRAG GG Sbjct: 63 EML-EMESDEEMRELAKEELSASKKRVEELEHELKILLLPKDPNDDKNIMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF +++RMY YA ++WK E++S ++N GG+KE+V +SG+ V+SRMK+ESGVH Sbjct: 122 ESALFAAEVYRMYVHYAESKRWKTELISFNENGIGGFKEVVFMVSGQSVYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQSAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+T+HRI LTLYK++ ++ G +D+II+PL+ A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTEHRIKLTLYKIDNIMNGDLDEIIDPLIAADQAAKLANMNE 356 >gi|119361535|sp|Q24ML9|RF1_DESHY RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 355 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 165/356 (46%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++ R+ E+ +S+ + + K + A ++ I+ Y + + ++ Sbjct: 1 MQRKLIEIERRYDELTQLLSDPEVIGNQSEWQKYAKAQAGMTDIVEAFREYSEVVKHLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E +++A++E+ + ++ ELE ++ LLLPKD +DDK+ I+EIRAG G Sbjct: 61 TQGLL-EEKLDPEFKEMAELELEELTEKRDELEEKMRILLLPKDPNDDKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY +YA + W+ E+LS+S D GG+KEI+ I G+G +S++KFESG Sbjct: 120 GEEAALFAGDLYRMYTKYAEQQGWRTELLSASYTDIGGFKEIIFLIEGQGAYSKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS TVAVLPEA E+DV I D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPTTESGGRIHTSTTTVAVLPEAEEVDVAINPNDLRIDIFCSSGPGGQSVNTTQ 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG +V EKSQ +N+ +A++VLRARL + ++ E ++ R+ Q+G+G Sbjct: 240 SAVRITHVPTGTVVSCQDEKSQLKNKEKALRVLRARLLERAQEEAMGELASERRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTL++L+ +L G +D++IN L+T QA+ + S + Sbjct: 300 DRSERIRTYNFPQGRVTDHRIGLTLHRLDSILLGELDEVINALITTDQAERLKSEA 355 >gi|92113653|ref|YP_573581.1| peptide chain release factor 1 [Chromohalobacter salexigens DSM 3043] gi|119361523|sp|Q1QXC6|RF1_CHRSD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91796743|gb|ABE58882.1| bacterial peptide chain release factor 1 (bRF-1) [Chromohalobacter salexigens DSM 3043] Length = 361 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 165/360 (45%), Positives = 239/360 (66%), Gaps = 7/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + RF E+ ++E + + + EYA + P+I Y + + Sbjct: 1 MKATLRTRLDGFQERFEELAALLAEPDVIADQARFRDYSREYAELEPLIEAWRSYRRTED 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D SD E+R+LA+ E + + L+ ++ LL+P+D DD + LEIR Sbjct: 61 DLEAAEQMRED--SDPEMRELAEEEWREAQARLEALDADVKRLLVPRDPDDASNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA W++EV+++S + GGYKE++A + G V++R+K Sbjct: 119 AGTGGDEAALFAGDLFRMYSRYAEKVGWRIEVINASHGEQGGYKELIARVRGDNVYARLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+ +A +V++ D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMAEASAVGEVELNSNDLRVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+P+G++V E+SQH+NR +AM +L ARL +++ R+ Sbjct: 239 VNTTDSAIRITHLPSGLVVECQEERSQHKNRAKAMALLAARLKQSAVDAQRQQQADTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGRITDHRINLTLYKL V+ G + ++I+PL+ +QA+ + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRITDHRINLTLYKLGDVMAGELGEVIDPLIHEYQAEQLSAL 358 >gi|77460969|ref|YP_350476.1| peptide chain release factor 1 [Pseudomonas fluorescens Pf0-1] gi|119361582|sp|Q3K6W9|RF1_PSEPF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|77384972|gb|ABA76485.1| peptide chain release factor RF-1 [Pseudomonas fluorescens Pf0-1] Length = 360 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + + + + ++EYA + P++ + Sbjct: 1 MKASLLNKLDILQDRFEELTALLGDGEVISDQTKFRAYSKEYAELEPVVQGYKKLLGVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++ + LE+++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVREAKELLITLESDLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A I G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARIEGDNVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAVLPE E + ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVLPEPDEREAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG +V E+SQH+NR RAM L A+L D + AN ++ RKL Sbjct: 239 VNTTDSAIRITHIPTGTVVECQEERSQHKNRARAMAWLSAKLNDQQTAAAANAIASERKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF+QGR+TDHR+NLTLY L+ +L G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFAQGRVTDHRVNLTLYSLDEILAGGVEAVIEPLLAEYQADQLAAI 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|255262532|ref|ZP_05341874.1| peptide chain release factor 1 [Thalassiobium sp. R2A62] gi|255104867|gb|EET47541.1| peptide chain release factor 1 [Thalassiobium sp. R2A62] Length = 351 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 186/354 (52%), Positives = 245/354 (69%), Gaps = 4/354 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + RF +E +M+ + D L +EY+ + P+I I+ Y + + + Sbjct: 1 MIPQDKLEQILGRFQFLEAKMASGDAADDIAALAKEYSDLRPVIDVITEYQTLEADLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ SD ++++LA+ E+ + + E+E + LLPKD D + ++EIR GTGG Sbjct: 61 ELMM----SDPDMKELAEEELPMLRARLPEIEQNLQIALLPKDAADARPAMIEIRPGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL RMY+RYA R W E++ + GG KE+ A + G GVF+RMK+ESGV Sbjct: 117 DEAALFAGDLLRMYQRYAEARGWTFEIIEEQSTELGGIKEVTAHVKGEGVFARMKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA ++D+ I D+RIDTMRASGSGGQHVNTTDS Sbjct: 177 HRVQRVPTTESGGRIHTSAATVAVLPEAEDVDIQIDPGDLRIDTMRASGSGGQHVNTTDS 236 Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AVRITHIP+GI+V SSEKSQH+NR AM L+ RLYD ER+R+ ERSA+R QIGSGDR Sbjct: 237 AVRITHIPSGIVVVSSEKSQHRNREIAMLTLKTRLYDAERQRVDGERSADRAAQIGSGDR 296 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D+ I L QA ++ Sbjct: 297 SERIRTYNFPQGRMTDHRINLTLYKLDQVMQGDLDETIEALTADAQATLMAEMG 350 >gi|77164037|ref|YP_342562.1| peptide chain release factor 1 [Nitrosococcus oceani ATCC 19707] gi|254436043|ref|ZP_05049550.1| peptide chain release factor 1 [Nitrosococcus oceani AFC27] gi|119361569|sp|Q3JDR4|RF1_NITOC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|76882351|gb|ABA57032.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrosococcus oceani ATCC 19707] gi|207089154|gb|EDZ66426.1| peptide chain release factor 1 [Nitrosococcus oceani AFC27] Length = 360 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 181/362 (50%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++E + +L++EYA + P+I ++Q + Sbjct: 1 MKDSIRSKLETLAERQQELTALLAEPEIASAQKKFRELSQEYAQLEPVIGCFRDFEQAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D E+R LAQ E+ A EK++ L+ E++ LLLP D +D ++ LEIR Sbjct: 61 VLNESKALLQDQ--DPELRVLAQEEIAAAEKKLERLDRELHTLLLPSDPNDKRNIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DL RMY RYA R W+ E++ S + GG+KEI+ I G G +SR+K Sbjct: 119 AGTGGDEAALFASDLLRMYLRYAEQRGWRTEIMGDSPGEHGGHKEIIVRIVGAGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PEA EID DI D+R+DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPQTESQGRIHTSACTVAIMPEAEEIDDIDINPADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+ +GI+V E+SQH+NR RAM +LR +L E ++ E +A R+ Sbjct: 239 VNKTDSAIRITHLASGIVVECQDERSQHKNRARAMSLLRTKLKSEEEAKLVAEETATRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +LQG +D II+PL+ HQA + + Sbjct: 299 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEILQGNLDAIIDPLVAEHQADQLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|46581318|ref|YP_012126.1| peptide chain release factor 1 [Desulfovibrio vulgaris str. Hildenborough] gi|120601501|ref|YP_965901.1| peptide chain release factor 1 [Desulfovibrio vulgaris DP4] gi|61214640|sp|Q727E1|RF1_DESVH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223554|sp|A1VAK8|RF1_DESVV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46450740|gb|AAS97386.1| peptide chain release factor 1 [Desulfovibrio vulgaris str. Hildenborough] gi|120561730|gb|ABM27474.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfovibrio vulgaris DP4] gi|311234981|gb|ADP87835.1| peptide chain release factor 1 [Desulfovibrio vulgaris RCH1] Length = 357 Score = 286 bits (732), Expect = 3e-75, Method: Composition-based stats. Identities = 187/354 (52%), Positives = 258/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +L+ +F ++E ++S + + Y KLT+ +A + ++ Y + KQ D Sbjct: 4 KLENLELKFEDLEQQLSSAEVFNDQDRYRKLTKAHADLKQVVDAFRRYKEMKQNLADNKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++GD SD EIR +A E+ AIE + ++E E+ LLLP+D DDK+ +LEIRAGTGG E Sbjct: 64 LLGD--SDHEIRAMAHEEIKAIEAALPDIEQELKILLLPRDPMDDKNILLEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF DLFRMY RYA + WKVEVLS+SD+D GGYKEI+A I+G V+SR+K+ESG HR Sbjct: 122 ASLFAADLFRMYTRYAEIMGWKVEVLSASDSDTGGYKEIIALIAGDKVYSRLKYESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATEA GR+HTSAATVAV+PEA E+DVDI +D+RID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATEAQGRIHTSAATVAVMPEAEEVDVDIRPDDLRIDVYRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V EKSQH+N+ +AMKVL +R+ E++R + + R+ +GSGDRS Sbjct: 242 RITHLPTGIVVACQDEKSQHKNKAKAMKVLISRVLQAEQERAHSVIADARRALVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q RITDHRINLTLY L+ V++G + +++ L+T Q + + + ++ Sbjct: 302 ERIRTYNYPQSRITDHRINLTLYSLDKVMEGELAPLVDALVTHAQTEALKAQAD 355 >gi|289423330|ref|ZP_06425138.1| peptide chain release factor 1 [Peptostreptococcus anaerobius 653-L] gi|289156261|gb|EFD04918.1| peptide chain release factor 1 [Peptostreptococcus anaerobius 653-L] Length = 354 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 173/354 (48%), Positives = 249/354 (70%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++++ E+ ++++ + + KL +E + + PI+ K Y + + + Sbjct: 1 MLDKLMVLEDKYKELSEKVADPEIISDQPTWQKLMKENSELEPIVMKYREYRKVNETIAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD ++R+LA++E+ E +I ++E+E+ LL+PKD +D+K+ I+EIR G G Sbjct: 61 SKQIL-EEESDEDLRELAKMELSEAESQIVDIEDELKLLLVPKDPNDEKNVIVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + WK ++SS++ GGYKE+ I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLFRMYSRYAERKGWKTSLMSSNETGVGGYKEVSFLIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTS ATVAVLPE +++V I ED+R D RASG+GGQ VNTTD Sbjct: 180 VHRVQRIPTTESGGRIHTSTATVAVLPEVDDVEVQINPEDLRFDVFRASGNGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG +V EKSQ +N+ +A+KVL+ARLYD E SA RK Q+G+G Sbjct: 240 SAVRLTHIPTGEVVSCQDEKSQLKNKEKALKVLKARLYDRALADQQKEISAERKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR++DHRINLTLYKL+ + G ID++I+ L+T QA+ + S Sbjct: 300 DRSERIRTYNFPQGRVSDHRINLTLYKLDSFIDGDIDEMIDGLITVDQAEKMSS 353 >gi|148378145|ref|YP_001252686.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC 3502] gi|153932228|ref|YP_001382546.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC 19397] gi|153936703|ref|YP_001386098.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall] gi|166223548|sp|A7FQG2|RF1_CLOB1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223549|sp|A5HY35|RF1_CLOBH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148287629|emb|CAL81694.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC 3502] gi|152928272|gb|ABS33772.1| peptide chain release factor 1 [Clostridium botulinum A str. ATCC 19397] gi|152932617|gb|ABS38116.1| peptide chain release factor 1 [Clostridium botulinum A str. Hall] Length = 358 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 245/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++N++ E+ ++S+ + + KL +E+A + I++ Y + +++ + Sbjct: 1 MLERLNFIENKYEELSNKISDPSVMANQKEWQKLCKEHADLEIIVNTYREYKKAQEDLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++AQ E+ + ++ +LE E+ LLLPKD +DDK +EIRAG G Sbjct: 61 DKEMLKEE-SDKELREMAQEEIKELTLKLEDLERELTILLLPKDPNDDKDVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L RMY RYA + WKVE +S + D GG+KE+ + G+G +SR+K+ESG Sbjct: 120 GEEAALFASNLLRMYTRYAERKNWKVETISLNATDIGGFKEVTVAVKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D++I D+RID RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDININANDLRIDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +N+ +AMKVL+ARL++ A + +RK Q+G+G Sbjct: 240 SAVRITHLPTGLVVTCQDEKSQLKNKEKAMKVLKARLFEAAEAERAASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGRITDHRI LTLYKLE L G ID+ I L+T QA+ + Sbjct: 300 DRSERIRTYNYPQGRITDHRIGLTLYKLETFLDGDIDEAIEALVTEDQAEKMKDLG 355 >gi|85059854|ref|YP_455556.1| peptide chain release factor 1 [Sodalis glossinidius str. 'morsitans'] gi|119361611|sp|Q2NRS4|RF1_SODGM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|84780374|dbj|BAE75151.1| peptide chain release factor RF-1 [Sodalis glossinidius str. 'morsitans'] Length = 360 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E+ + + + + L++EYA +S + + Q ++ Sbjct: 1 MKSSIVAKLEALQERREEVEVLLGDPGVISDQIRFRALSKEYAQLSDVTRCFQHWWQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+RD+AQ E+LA + +LE ++ LLLP+D DD++ C LE+R Sbjct: 61 DIHTAEHLLQ----DPEMRDMAQEELLASGASLEQLEQQLQVLLLPRDPDDERGCFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+WKVE++S+S + GG+KE++A +S G + +K Sbjct: 117 AGTGGDEAALFAGDLFRMYSRYAETRRWKVEIVSASYGEHGGFKEVIAKVSHEGAYGLLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG++V E+SQH+N+ +A+ VL ARL E +R E S+ R+ Sbjct: 237 VNTTDSAIRITHLPTGLVVECQDERSQHKNKAKALAVLGARLRAAEVQRRQQEESSTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRI LTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRIRTYNFPQGRVTDHRIGLTLYRLDEVIEGKLDMLIQPIMQEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|152977515|ref|YP_001377032.1| peptide chain release factor 1 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|189039958|sp|A7GV79|RF1_BACCN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|152026267|gb|ABS24037.1| peptide chain release factor 1 [Bacillus cytotoxicus NVH 391-98] Length = 355 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 246/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ ++ +S+ ++ KL ++E + I + Y +++ QD Sbjct: 1 MLDRLQAVEDRYEKLNELLSDPAVINDSNKLREYSKEQSDIQETVEVYREYKDVREQLQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E+R++ + EV +E + +EL + + LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAMLEDK-LDAEMREMVKEEVSDLEVQEKELSDRLKILLVPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RYA ++ WK +++ +S + GGYKEI+ I+G+G ++++KFE+G Sbjct: 120 GDEAALFAGDLYRMYSRYAEMQGWKTDIIEASYTELGGYKEIIFMINGKGAYAKLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFRQEAQAEYDQNRKQAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QAK + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAKKMEAAE 355 >gi|296505754|ref|YP_003667454.1| peptide chain release factor 1 [Bacillus thuringiensis BMB171] gi|46576766|sp|Q812I4|RF1_BACCR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|296326806|gb|ADH09734.1| peptide chain release factor 1 [Bacillus thuringiensis BMB171] Length = 355 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 166/356 (46%), Positives = 243/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 1 MLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R G Sbjct: 61 AKAMLEDK-LDAEMREMVKEEVSELESQDKTLSERLKILLVPKDPNDDKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 355 >gi|332299913|ref|YP_004441834.1| Peptide chain release factor 1 [Porphyromonas asaccharolytica DSM 20707] gi|332176976|gb|AEE12666.1| Peptide chain release factor 1 [Porphyromonas asaccharolytica DSM 20707] Length = 368 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 152/360 (42%), Positives = 225/360 (62%), Gaps = 12/360 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L R E+E +++ + + L++EY + I+ Y Q ++++ + Sbjct: 7 RIEALVARHEELETLITDPNVIADGRRFATLSKEYTHLGEILKAGGQYKQLLTQQEEAES 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D +SD E++ +A+ + ++EI ++E EI LLLP D +DDK+ ILE+RAGTGG E Sbjct: 67 TLQDTDSDEELKAMARELLAEAKEEIPKMEEEIKLLLLPNDPEDDKNAILELRAGTGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RY + W V V S ++ GGYKEIV ++G GV+ +K+ESGVHR Sbjct: 127 AALFAGDLFRMYSRYCETKGWNVTVSSYTEGGTGGYKEIVLNVTGTGVYGTLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GR+HTSAATVAVLPEA + +V+I +I+ DT R+SG+GGQ+VN +S V Sbjct: 187 VQRVPQTETQGRIHTSAATVAVLPEADKFEVNINEGEIKWDTFRSSGAGGQNVNKVESGV 246 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + + + + Q +N+ RA+ LR +YD E ++ +E ++ RK Sbjct: 247 RLHYPWRNPNTGVVEDITIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDEIASRRKT 306 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYNF QGR+TDHRI LT++ L VL G + II+ L+ A + + A Sbjct: 307 MVSTGDRSAKIRTYNFPQGRVTDHRIGLTVHNLPGVLGGDLQPIIDALIVAENTERLKEA 366 >gi|103488191|ref|YP_617752.1| peptide chain release factor 1 [Sphingopyxis alaskensis RB2256] gi|119361612|sp|Q1GPK3|RF1_SPHAL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|98978268|gb|ABF54419.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingopyxis alaskensis RB2256] Length = 355 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 181/359 (50%), Positives = 262/359 (72%), Gaps = 6/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M +S +QI + R A ++ RM+ + ++ ++E+A + P+ + + ++E Sbjct: 1 MTSVSARQIDAIIERHAALQARMATGDMAPADFVAASKEFAELEPVATAAREVVRLREEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L+ ++ D E++ +A E+ A+E + E+++ LLPKD D ++ +LEIRAG Sbjct: 61 VALNEMLA----DPEMKAMAVEEIAAVEAALPAAEHDLALQLLPKDVADSRAAMLEIRAG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDL RMY RYA + WKVE++S+++ + GGYKE+VA++SG+GVF+++KFE Sbjct: 117 TGGDEAALFAGDLLRMYSRYADTQGWKVEIISANEAEVGGYKEVVASVSGQGVFAKLKFE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTSAATVAVLPEA E+DV I D++ID RASG+GGQHVNT Sbjct: 177 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVAINDSDLKIDIYRASGAGGQHVNT 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSA+RITHIPTG++V ++SQH+NR +AM+VLRARLYD+ER+++ + ++ RK +G Sbjct: 237 TDSAIRITHIPTGLVVIQQDQRSQHKNRAKAMQVLRARLYDLEREKLHSAEASARKSMVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF QGR+TDHRINLTL++L +L+G +D++I+ L+ QA+ + E Sbjct: 297 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGAMDELIDALIAEDQAQRLAGLGE 355 >gi|294142153|ref|YP_003558131.1| peptide chain release factor 1 [Shewanella violacea DSS12] gi|293328622|dbj|BAJ03353.1| peptide chain release factor 1 [Shewanella violacea DSS12] Length = 361 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S+ + D + L++EY+ + +++ + Q + Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDPGVISDQDRFRALSKEYSQLEDVVATFKAFQQATE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + +D EI+++AQ E+ + I +LE+E+ LLLPKD +DD + +EIR Sbjct: 61 DLDAAKEMLSE--NDPEIKEMAQEEMKDAKSIIVKLEDELQILLLPKDPNDDNNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDL+RMY RY +W+ E++++++ + GG+KE++ +SG GV+ R+K Sbjct: 119 AGAGGDEAAIFAGDLYRMYTRYFETNRWQTEIMNANEGEHGGFKEVIIKVSGEGVYGRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVL E E + D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLAEVPEAEAIKINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIP+GI+V ++SQH+NR +AM VL AR+ VE ++ + R+ Sbjct: 239 VNKTDSAIRLTHIPSGIVVECQDQRSQHKNRAQAMSVLSARIQAVEDEKRRSAEETTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR++DHRINLTLY+L V++G +D +I PL+ +QA M+ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVSDHRINLTLYRLNDVMEGELDVLIVPLMQENQADMLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|323527482|ref|YP_004229635.1| peptide chain release factor 1 [Burkholderia sp. CCGE1001] gi|323384484|gb|ADX56575.1| peptide chain release factor 1 [Burkholderia sp. CCGE1001] Length = 356 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 176/358 (49%), Positives = 251/358 (70%), Gaps = 9/358 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L R AE+ +S ++D Y KLT E+A + P++ +++ Q + Sbjct: 1 MQHKLDQLTTRLAELNDLLSREDITSNLDQYRKLTREHAELGPVVEHYALWRQAMHDAAT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +D+ +RD A+ E+ A + +L E+ +LLPKD +DD++ LEIRAGTG Sbjct: 61 AQELL----TDASMRDFAEEEIRAARDRMEQLGGELQTMLLPKDPNDDRNIFLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDL RMY RYA +W+VE++S+S++D GGYKE++ I+G +S++KFESG Sbjct: 117 GDESALFAGDLLRMYLRYAERNRWQVEMMSASESDLGGYKEVIVRIAGEAAYSKLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVPATE GR+HTSA TVAV+PEA EI +V+I D+RIDT RASG+GGQH+N T Sbjct: 177 GHRVQRVPATETQGRIHTSACTVAVMPEADEIGEVEINPADLRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+TH+PTGI+V ++SQH+N+ RA+KVL AR+ D + + +A RK IGS Sbjct: 237 DSAVRVTHLPTGIVVECQDDRSQHKNKDRALKVLAARIKDKQSHEQQAKEAATRKSLIGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLY+L+ ++ G +D++I L++ HQA+++ S + Sbjct: 297 GDRSERIRTYNFPQGRLTDHRINLTLYRLDAIMDGDLDELIGALVSEHQAELLASLGD 354 >gi|313886402|ref|ZP_07820124.1| peptide chain release factor 1 [Porphyromonas asaccharolytica PR426713P-I] gi|312924148|gb|EFR34935.1| peptide chain release factor 1 [Porphyromonas asaccharolytica PR426713P-I] Length = 368 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 151/360 (41%), Positives = 225/360 (62%), Gaps = 12/360 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+E +++ + + L++EY + I+ Y Q ++++ + Sbjct: 7 RVEALVARHEELETLITDPNVIADGRRFATLSKEYTHLGEILKAGGQYKQLLTQQEEAES 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D +SD E++ +A+ + ++EI ++E EI LLLP D +DDK+ ILE+RAGTGG E Sbjct: 67 TLQDADSDEELKAMARELLAEAKEEIPKMEEEIKLLLLPNDPEDDKNAILELRAGTGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RY + W V V S ++ GGYKEIV ++G GV+ +K+ESGVHR Sbjct: 127 AALFAGDLFRMYSRYCETKGWNVTVSSYTEGGTGGYKEIVLNVTGTGVYGTLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GR+HTSAATVAVLPEA + +V+I +I+ DT R+SG+GGQ+VN +S V Sbjct: 187 VQRVPQTETQGRIHTSAATVAVLPEADKFEVNINEGEIKWDTFRSSGAGGQNVNKVESGV 246 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + + + + Q +N+ RA+ LR +YD E ++ +E ++ RK Sbjct: 247 RLHYPWRNPNTGVVEDITIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDEIASRRKT 306 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYNF QGR+TDHRI LT++ L VL G + II+ L+ A + + A Sbjct: 307 MVSTGDRSAKIRTYNFPQGRVTDHRIGLTVHNLPGVLGGDLQPIIDALIVAENTERLKEA 366 >gi|229064980|ref|ZP_04200278.1| Peptide chain release factor 1 [Bacillus cereus AH603] gi|228716281|gb|EEL67993.1| Peptide chain release factor 1 [Bacillus cereus AH603] Length = 358 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++RD+ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++++I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|229164277|ref|ZP_04292210.1| Peptide chain release factor 1 [Bacillus cereus R309803] gi|228619217|gb|EEK76110.1| Peptide chain release factor 1 [Bacillus cereus R309803] Length = 358 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+R++ + EV +E + +EL + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDAEMREMVKEEVSELEGQDKELSARLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|119775698|ref|YP_928438.1| peptide chain release factor 1 [Shewanella amazonensis SB2B] gi|166223600|sp|A1S8R2|RF1_SHEAM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119768198|gb|ABM00769.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella amazonensis SB2B] Length = 363 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + D + L++EYA + ++ Y Q Sbjct: 1 MKESVIRKLEGLLERNEEVLALLSDASIISDQDRFRALSKEYAQLEDVVKGFKAYQQAVA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E++++AQ E+ + + + LE E+ LLLPKD +D+ + +EIR Sbjct: 61 DLETAKEML--EEDDPELKEMAQEEIKSAKASLERLEAELQILLLPKDPNDEANAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA ++W+VE++S+++ + GGYKE++A SG V+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAETQRWQVEIMSANEGEHGGYKEVIARFSGERVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVL E E + +I ++RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLHEVPEAEAVEINPSELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG +V E+SQH+N+ RAM VL ARL E ++ + + R+ Sbjct: 239 VNKTDSAIRITHLPTGTVVECQDERSQHKNKARAMSVLVARLQAAEDEKRRSAEATTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR++DHRINLTLY+L V++G ++ +I P++ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVSDHRINLTLYRLNEVMEGDLNALIEPIVQEHQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|327481907|gb|AEA85217.1| peptide chain release factor 1 [Pseudomonas stutzeri DSM 4166] Length = 360 Score = 286 bits (731), Expect = 4e-75, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++RF E+ + ++ + + + EYA + P+I + +Q Sbjct: 1 MKASLLNKLDILQDRFEELTALLGDAEVISDQNRFRAYSREYAEVEPVIVAYRQLCKVQQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A+ EV + ++ LE + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAEEEVAEAKAQLETLEANLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W+VE+LS S+ + GGYKE+++ + G V++++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAEKQGWRVEILSESEGEHGGYKEVISRVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E +I D+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAVEINPADLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +A+ L A+L D + E S RKL Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKALAWLAAKLQDRQDAAAHKEISETRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHR+NLTLY L V+ G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRVNLTLYSLNEVIGGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|121997785|ref|YP_001002572.1| peptide chain release factor 1 [Halorhodospira halophila SL1] gi|166223563|sp|A1WVQ8|RF1_HALHL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|121589190|gb|ABM61770.1| bacterial peptide chain release factor 1 (bRF-1) [Halorhodospira halophila SL1] Length = 363 Score = 286 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + R EI ++++ V + +L+ EYA + P++ ++ Y + Sbjct: 1 MKATIRNKLERMAERHEEIGAQLADPDVVGDPSKFAELSREYARLEPVVQDLNAYRAEAD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D D+EIR LA+ E+ ++ + ELE + L+P D +D ++ LE+R Sbjct: 61 TVASAEAMLND--GDAEIRALAEQELAEAQRRLEELEGALQRHLVPTDPNDQRNIFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAALF GDL RMY RYA + WK E+LS+ + + GGY+E++A +SGR V++R+K Sbjct: 119 AGAGGDEAALFAGDLLRMYMRYAERQGWKTEILSAREGEHGGYREVIARVSGRSVYARLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVA+LPE +++ D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAILPELDEVSAIEVNTADLRVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+P+G++V E+SQ++NR +A+ +L+ARL + ER + +ERS R+L Sbjct: 239 VNTTDSAIRITHLPSGLVVECQDERSQNKNRAKAIALLQARLTEQERAKQQSERSEQRRL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRI LTLYKLE V++G +D++++ L HQA+ + Sbjct: 299 AVGSGDRSERIRTYNFPQGRVTDHRIGLTLYKLEQVMEGGMDELLDGLTQEHQAEALAEI 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|197284958|ref|YP_002150830.1| peptide chain release factor 1 [Proteus mirabilis HI4320] gi|238693176|sp|B4EVR7|RF1_PROMH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194682445|emb|CAR42344.1| peptide chain release factor 1 [Proteus mirabilis HI4320] Length = 360 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EI+ ++E+ + + + L++EYA ++ I S + + + + + Sbjct: 8 KLEALQERYEEIQALLAEADVIASQERFRALSKEYAQLTDITSCYRQWRKVQDDMEAAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ + ELE ++ LLLPKD DD+ +C LEIRAGTGG E Sbjct: 68 ML----DDPEMKEMAQEELKEAQSVNEELEQQLQVLLLPKDPDDEFNCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W++EV+++++ + GGYKEI+A + G G + +KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRIEVMNANEGEHGGYKEIIAKVIGDGAYGVLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAVLPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVLPEVPEAELPEISPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVQKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++T +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIQPIVTEYQADQLSALSE 358 >gi|119472532|ref|ZP_01614580.1| Peptide chain release factor 1 (RF-1) [Alteromonadales bacterium TW-7] gi|119444856|gb|EAW26156.1| Peptide chain release factor 1 (RF-1) [Alteromonadales bacterium TW-7] Length = 361 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M + ++ L R+ E++ +S+ + + L++EY+ + I+ Y Q K+ Sbjct: 1 MKESVYNKLETLVERYEEVQALLSDPSVISDQNRFRGLSKEYSELEEIVKTFLAYQQTKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D SD ++R++AQ E + +I LE+EI L+LPKD D+ + LE+R Sbjct: 61 DLASAEEMLKD--SDPDMREMAQEEYKEAKAQILSLEDEIQVLMLPKDPKDNNNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY R+A +KWK+EV+++++ + GGYKE++A ISG GV+ ++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRFAETQKWKLEVVTTNEGEHGGYKEVIANISGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+ ++I DI++DT RASG+GGQH Sbjct: 179 FESGVHRVQRVPETESQGRVHTSACTVAVMAEIPEAEAIEINTADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL ARL E ++ ++ R+ Sbjct: 239 VNKTDSAIRITHLPTGVVVECQDERSQHKNRAKAMSVLAARLQQAEDEKRHAAEASERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLY+L V+ G + I++PL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYRLNEVVAGDLGAIVDPLMQEHQADLLAAM 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|227355360|ref|ZP_03839761.1| peptide chain release factor 1 [Proteus mirabilis ATCC 29906] gi|227164584|gb|EEI49455.1| peptide chain release factor 1 [Proteus mirabilis ATCC 29906] Length = 360 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EI+ ++E+ + + + L++EYA ++ + S + + + + + Sbjct: 8 KLEALQERYEEIQALLAEADVIASQERFRALSKEYAQLTDVTSCYRQWRKVQDDMEAAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ + ELE ++ LLLPKD DD+ +C LEIRAGTGG E Sbjct: 68 ML----DDPEMKEMAQEELKEAQSVNEELEQQLQVLLLPKDPDDEFNCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W++EV+++++ + GGYKEI+A + G G + +KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRIEVMNANEGEHGGYKEIIAKVIGDGAYGVLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAVLPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVLPEVPEAELPEISPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVQKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++T +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIQPIVTEYQADQLSALSE 358 >gi|229014499|ref|ZP_04171617.1| Peptide chain release factor 1 [Bacillus mycoides DSM 2048] gi|229136148|ref|ZP_04264901.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST196] gi|229170037|ref|ZP_04297729.1| Peptide chain release factor 1 [Bacillus cereus AH621] gi|228613462|gb|EEK70595.1| Peptide chain release factor 1 [Bacillus cereus AH621] gi|228647307|gb|EEL03389.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST196] gi|228746849|gb|EEL96734.1| Peptide chain release factor 1 [Bacillus mycoides DSM 2048] Length = 358 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++RD+ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++++I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|289207525|ref|YP_003459591.1| peptide chain release factor 1 [Thioalkalivibrio sp. K90mix] gi|288943156|gb|ADC70855.1| peptide chain release factor 1 [Thioalkalivibrio sp. K90mix] Length = 361 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 251/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AEI ++ + + +L++EY+ + P+ + + Sbjct: 1 MKASFRNKLEGLAERHAEIAQLLATPDAAEDADQLRRLSQEYSQLEPVAEAWKAWHDNQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ + D E+R +A+ E+ + + LE E++ L+PKD D+ + LEIR Sbjct: 61 ALEEARAMLAE--DDPELRAMAEAEIETLADQAEALEAELHRHLIPKDPHDNANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL RMY RYA + WK+E+LS+S+ + GGY+E++A ++G+G +SR+K Sbjct: 119 AGTGGDEAAIFAGDLLRMYTRYAEQQNWKLEILSASEGEHGGYREVIARLAGQGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSAATVA+LPE E+++ DI D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSAATVAILPELDEVEMPDINPADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V E+SQH+NR +AM L ARL++ ER+ A +SA RK Sbjct: 239 VNKTDSAVRLTHLPTGIVVECQEERSQHKNRAKAMTYLAARLFEAEREAQAAAQSAERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKLE V+ G +D +I+PL+ +QA+ + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLEQVMAGDLDPVIDPLIHEYQAEQLATL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|187935755|ref|YP_001884696.1| peptide chain release factor 1 [Clostridium botulinum B str. Eklund 17B] gi|238691625|sp|B2TJY5|RF1_CLOBB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|187723908|gb|ACD25129.1| peptide chain release factor 1 [Clostridium botulinum B str. Eklund 17B] Length = 360 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 250/357 (70%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E A + I++ Y Q ++ Q Sbjct: 1 MLLDKLAFIENKYDELSVKISDPSIMQNQNEWRKLCKEQADLEIIVNAYKEYKQVIEDLQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D SD E++++ E+ ++ + ELE EI LLLPKD +DDK+ +EIR G Sbjct: 61 VNKEMLSDE-SDREMKEMLNEEIASLSQREVELEKEIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W E++S ++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGEEAALFAYNLFRMYTRYAERQRWSTEIMSLNETDIGGFKEVVFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS TVAVLPE +++++I +D+RID RASG GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTVTVAVLPEVDDVEIEIADKDVRIDVFRASGHGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V EKSQ +N+ +AMKVLR+RL++ + A+ +A+RK Q+G+ Sbjct: 240 DSAVRITHLPSGLVVSCQDEKSQLKNKEKAMKVLRSRLFEKAEQERADGIAADRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGRITDHRI LTLYKL+ L G + ++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNYPQGRITDHRIGLTLYKLDSFLDGDVQEMINALITADQAEKMQKMG 356 >gi|30023360|ref|NP_834991.1| peptide chain release factor 1 [Bacillus cereus ATCC 14579] gi|206970257|ref|ZP_03231210.1| peptide chain release factor 1 [Bacillus cereus AH1134] gi|218236058|ref|YP_002370106.1| peptide chain release factor 1 [Bacillus cereus B4264] gi|228924065|ref|ZP_04087341.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955577|ref|ZP_04117579.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961593|ref|ZP_04123202.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229051000|ref|ZP_04194549.1| Peptide chain release factor 1 [Bacillus cereus AH676] gi|229072796|ref|ZP_04205995.1| Peptide chain release factor 1 [Bacillus cereus F65185] gi|229082544|ref|ZP_04215007.1| Peptide chain release factor 1 [Bacillus cereus Rock4-2] gi|229112743|ref|ZP_04242276.1| Peptide chain release factor 1 [Bacillus cereus Rock1-15] gi|229130579|ref|ZP_04259535.1| Peptide chain release factor 1 [Bacillus cereus BDRD-Cer4] gi|229147870|ref|ZP_04276211.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST24] gi|229153493|ref|ZP_04281671.1| Peptide chain release factor 1 [Bacillus cereus m1550] gi|229181577|ref|ZP_04308903.1| Peptide chain release factor 1 [Bacillus cereus 172560W] gi|229193581|ref|ZP_04320525.1| Peptide chain release factor 1 [Bacillus cereus ATCC 10876] gi|29898921|gb|AAP12192.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bacillus cereus ATCC 14579] gi|206734834|gb|EDZ52003.1| peptide chain release factor 1 [Bacillus cereus AH1134] gi|218164015|gb|ACK64007.1| peptide chain release factor 1 [Bacillus cereus B4264] gi|228589886|gb|EEK47761.1| Peptide chain release factor 1 [Bacillus cereus ATCC 10876] gi|228601945|gb|EEK59440.1| Peptide chain release factor 1 [Bacillus cereus 172560W] gi|228630097|gb|EEK86748.1| Peptide chain release factor 1 [Bacillus cereus m1550] gi|228635520|gb|EEK92009.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST24] gi|228652918|gb|EEL08800.1| Peptide chain release factor 1 [Bacillus cereus BDRD-Cer4] gi|228670724|gb|EEL26035.1| Peptide chain release factor 1 [Bacillus cereus Rock1-15] gi|228700976|gb|EEL53499.1| Peptide chain release factor 1 [Bacillus cereus Rock4-2] gi|228710287|gb|EEL62262.1| Peptide chain release factor 1 [Bacillus cereus F65185] gi|228722377|gb|EEL73773.1| Peptide chain release factor 1 [Bacillus cereus AH676] gi|228798075|gb|EEM45079.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804105|gb|EEM50722.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835555|gb|EEM80920.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 358 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDAEMREMVKEEVSELESQDKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|92116091|ref|YP_575820.1| peptide chain release factor 1 [Nitrobacter hamburgensis X14] gi|119361567|sp|Q1QQY7|RF1_NITHX RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91798985|gb|ABE61360.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrobacter hamburgensis X14] Length = 361 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 192/358 (53%), Positives = 256/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L R A +E + S + Y+++T E + ++P++ + + K E Sbjct: 1 MSSLPEAKLDILLARHAALENELLSQISAERYVQMTRELSELNPVVEAVKNWRAVKTEIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + +I D +D+E+R +A+ E A+ EL +I LLPKD D+++ +LEIRAGT Sbjct: 61 GIDAMIADPATDAEMRAMAEAERPALGARGDELAQKIRVALLPKDAMDERNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYER+A L+ WKVE +S+S+ GGYKEIVA + GRG ++++KFES Sbjct: 121 GGDEASLFAGDLFRMYERFAGLQGWKVEAISASEGTMGGYKEIVAEVRGRGAYAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GRVHTSAATVAVLPEA E+DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDVDIKTDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITHIPTGI+V +SQH+NR AM +LR+R+YD ER+R+ RSA+RK Q+GS Sbjct: 241 ESAIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRINAARSADRKDQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLATEG 358 >gi|163943017|ref|YP_001647901.1| peptide chain release factor 1 [Bacillus weihenstephanensis KBAB4] gi|229470347|sp|A9VSC7|RF1_BACWK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|163865214|gb|ABY46273.1| peptide chain release factor 1 [Bacillus weihenstephanensis KBAB4] Length = 355 Score = 285 bits (730), Expect = 5e-75, Method: Composition-based stats. Identities = 165/356 (46%), Positives = 243/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 1 MLDRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQDTVEVYREYKDVREQLRD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+++RD+ + EV +E + + L + LL+PKD +DDK+ I+E+R G Sbjct: 61 AKAMLEDK-LDADMRDMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E++++I +D+R+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 355 >gi|88861344|ref|ZP_01135974.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata D2] gi|88816610|gb|EAR26435.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas tunicata D2] Length = 361 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 253/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++++ L R+ E+E +SE+ + D + L++EYA + + + Y Q +Q Sbjct: 1 MKESVYRKLETLVERYEEVEALLSEASVISDQDRFRALSKEYAELEDVSKVFNAYRQAEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D D ++RD+AQ E A + ++ L +E+ L+LPKD D+ + LE+R Sbjct: 61 DLVAAEEMFKDE--DPDMRDMAQDEFKAAKAQLETLTDELQVLMLPKDPKDNNNVYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY R+A +KWKVE++S+++ + GGYKE++A ISG GV+ ++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYARFAETQKWKVEIVSANEGEHGGYKEVIANISGTGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+PE E + ++I DI++DT RASG+GGQH Sbjct: 179 FESGVHRVQRVPETESQGRVHTSACTVAVMPEIPEAEAIEINAADIKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V E+SQH+NR +AM VL +RL E ++ E + R+ Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSVLASRLQQAEDEKRHAEEATQRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLYKL ++ G + IINPL+ HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYKLNEIVSGDLLPIINPLVQEHQADLLAAM 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|197120814|ref|YP_002132765.1| peptide chain release factor 1 [Anaeromyxobacter sp. K] gi|238689845|sp|B4UAY8|RF1_ANASK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|196170663|gb|ACG71636.1| peptide chain release factor 1 [Anaeromyxobacter sp. K] Length = 370 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 236/354 (66%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ ++ RF E+ +S+ D + K+ +E A+I ++ + Y + ++ + Sbjct: 8 KKLEAIEQRFEELTQLLSDPAVAGNGDRFRKVAKERASIEQTVTALRAYRKLLEDVEGNE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R+LA+ E+ + ++ E ++ L+PKD +D+K I+EIRAG GG Sbjct: 68 ALLADK--DPELRELAKEELAQLRPQVEPAEEQLKLYLVPKDPNDEKDVIVEIRAGAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF ++ RMY RYA R W+VE++ +S GG KE T+SG V+S +K+ESGVH Sbjct: 126 EAGLFAAEVMRMYVRYAERRGWRVELMDTSGGALGGVKEATLTVSGDAVYSSLKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS TVAV+PEA EIDV + D+ +D R++GSGGQ VNTTDSA Sbjct: 186 RVQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+V EKSQ +NR AMK+LRA+L+++E++R + R A RK Q+G+GDR Sbjct: 246 VRLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQRSARDATRKSQVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R+TDHR+N T + L V+ G + D+I+ T + A+ + AS Sbjct: 306 SEKIRTYNFPQDRLTDHRVNYTRHNLPAVMDGDVQDVIDACRTFYAAQALREAS 359 >gi|30265352|ref|NP_847729.1| peptide chain release factor 1 [Bacillus anthracis str. Ames] gi|42784501|ref|NP_981748.1| peptide chain release factor 1 [Bacillus cereus ATCC 10987] gi|47530891|ref|YP_022240.1| peptide chain release factor 1 [Bacillus anthracis str. 'Ames Ancestor'] gi|222098801|ref|YP_002532859.1| peptide chain release factor 1 [Bacillus cereus Q1] gi|46576768|sp|Q81JX1|RF1_BACAN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61214595|sp|Q630R9|RF1_BACCZ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61214623|sp|Q6HAV4|RF1_BACHK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61214641|sp|Q72XC2|RF1_BACC1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790861|sp|B9IRW2|RF1_BACCQ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|30260030|gb|AAP29215.1| peptide chain release factor 1 [Bacillus anthracis str. Ames] gi|42740433|gb|AAS44356.1| peptide chain release factor 1 [Bacillus cereus ATCC 10987] gi|47506039|gb|AAT34715.1| peptide chain release factor 1 [Bacillus anthracis str. 'Ames Ancestor'] gi|221242860|gb|ACM15570.1| peptide chain release factor 1 [Bacillus cereus Q1] Length = 355 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 166/356 (46%), Positives = 243/356 (68%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 1 MLDRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R G Sbjct: 61 AKAMLEDK-LDAEMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G Sbjct: 120 GDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 355 >gi|242239290|ref|YP_002987471.1| peptide chain release factor 1 [Dickeya dadantii Ech703] gi|242131347|gb|ACS85649.1| peptide chain release factor 1 [Dickeya dadantii Ech703] Length = 361 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 245/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + + + D + L+ EYA ++ I + Q + + Sbjct: 8 KLEALQERHEEVQALLGDPSIISDMDRFRMLSREYAQLTDITRCFQRWQQAQDDIATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + LE ++ LLLP+D DD++ C LEIRAGTGG E Sbjct: 68 LL----DDPEMREMAQDELKEAREAGDTLEQQLKVLLLPRDPDDERGCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+SD + GGYKE++A + G G + ++KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEMVSASDGEHGGYKEVIAKVIGEGAYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPEVPEAELPDINPVDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLAARIRAAEMQKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + +E Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEAIEGKLDMLIQPIVQEYQADQLAALAE 358 >gi|319650894|ref|ZP_08005031.1| peptide chain release factor 1 [Bacillus sp. 2_A_57_CT2] gi|317397492|gb|EFV78193.1| peptide chain release factor 1 [Bacillus sp. 2_A_57_CT2] Length = 357 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V+ KL ++E + I + Y + K++ QD Sbjct: 3 DRLQSVEDRYERLNELLSDPEIVNDPKKLREYSKEQSGIQETVDTYREYKEVKEQYQDAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+R++ + E+ +E+ +LE + LL+PKD +DDK+ I+EIR GG Sbjct: 63 AML-EEKLDAEMREMVKEELAELEERKEDLEARLKILLIPKDPNDDKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK++V+ +S GGYKEI+ I+G G +S++KFE+G H Sbjct: 122 EAALFAGDLYRMYSRYAETQGWKIDVIEASSTGVGGYKEIIFMINGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG +V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHLPTGTVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDQQRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +D++I+ L+ Q+ + SAS Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDEVIDALIVEEQSAKLDSAS 355 >gi|183598963|ref|ZP_02960456.1| hypothetical protein PROSTU_02407 [Providencia stuartii ATCC 25827] gi|188021179|gb|EDU59219.1| hypothetical protein PROSTU_02407 [Providencia stuartii ATCC 25827] Length = 360 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 248/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EI+ ++++ + + L++EYA ++ + + + +++ + Sbjct: 8 KLEALQERYEEIQAHLADAGVIADQGRFRALSKEYAQLTDVAKCFTAWRTVQEDIETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ + ELE ++ LLLPKD DD+ +C LEIRAG GG E Sbjct: 68 ML----DDPEMKEMAQEELKEAKARNEELEQQLQLLLLPKDPDDEYNCFLEIRAGAGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +W+VE++S+SD + GG+KE++A ISG V+ R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEANRWRVELMSTSDGEHGGFKEVIAKISGESVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVA+LPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAILPELPEAELPEINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRQAEMDKRQAAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIQPIINEYQADQLSALSE 358 >gi|302879738|ref|YP_003848302.1| peptide chain release factor 1 [Gallionella capsiferriformans ES-2] gi|302582527|gb|ADL56538.1| peptide chain release factor 1 [Gallionella capsiferriformans ES-2] Length = 362 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 237/355 (66%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+ +S +D Y KL E A + P++ Y + + Sbjct: 8 KLGQLSERLLEVNQLLSTEEATRDMDTYRKLNRERAELEPVVDLFHAYQACEGDIAAARE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E+R+ A E+ E ++ L+ E+ LLPKD +D++S LE+RAGTGG E Sbjct: 68 MAE----DPEMREFADTEIKEGEAKLALLDKELQTQLLPKDPNDERSVFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY R+A R+W+VEV+S S + GGYKEI+A I+G+G +S +KFESG HR Sbjct: 124 AALFAGDLFRMYSRFAERRRWQVEVVSESPGEMGGYKEIIARIAGQGAYSVLKFESGAHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE GRVHTSA TVA++PE E++ + D+RIDT RASG+GGQH+N TDSA Sbjct: 184 VQRVPATETQGRVHTSACTVAIMPEVDEVNDVVLNNADLRIDTFRASGAGGQHINKTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++V +SQHQN+ +AM+VL AR+ D + + E +A RK +GSGDR Sbjct: 244 VRITHIPTGVVVECQDGRSQHQNKAQAMRVLCARIKDAQVRAQNAETAATRKSLVGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRINLTLYK++ ++ G I ++ L+ HQA+ + + +E Sbjct: 304 SERIRTYNYPQGRVTDHRINLTLYKMDAIMDGEISELTGALMAEHQAEQLAAMAE 358 >gi|218900455|ref|YP_002448866.1| peptide chain release factor 1 [Bacillus cereus G9842] gi|228903804|ref|ZP_04067920.1| Peptide chain release factor 1 [Bacillus thuringiensis IBL 4222] gi|228911168|ref|ZP_04074974.1| Peptide chain release factor 1 [Bacillus thuringiensis IBL 200] gi|228942476|ref|ZP_04105013.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228968458|ref|ZP_04129447.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228975408|ref|ZP_04135964.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982045|ref|ZP_04142338.1| Peptide chain release factor 1 [Bacillus thuringiensis Bt407] gi|218545538|gb|ACK97932.1| peptide chain release factor 1 [Bacillus cereus G9842] gi|228777709|gb|EEM25983.1| Peptide chain release factor 1 [Bacillus thuringiensis Bt407] gi|228784390|gb|EEM32413.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791238|gb|EEM38851.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar sotto str. T04001] gi|228817218|gb|EEM63306.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228848531|gb|EEM93379.1| Peptide chain release factor 1 [Bacillus thuringiensis IBL 200] gi|228855831|gb|EEN00375.1| Peptide chain release factor 1 [Bacillus thuringiensis IBL 4222] gi|326943127|gb|AEA19023.1| peptide chain release factor 1 [Bacillus thuringiensis serovar chinensis CT-43] Length = 358 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+RD+ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AML-EEKLDAEMRDMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 358 >gi|86156794|ref|YP_463579.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans 2CP-C] gi|119361506|sp|Q2IMW2|RF1_ANADE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|85773305|gb|ABC80142.1| bacterial peptide chain release factor 1 (bRF-1) [Anaeromyxobacter dehalogenans 2CP-C] Length = 370 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 235/354 (66%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ ++ RF E+ +S+ D + K+ +E A+I ++ + Y + + Sbjct: 8 KKLEAIEQRFEELTQLLSDPAVAGNGDRFRKVAKERASIEQTVTALRAYRKLLDDVAGNE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++GD D E+R+LA+ E+ + ++ E ++ L+PKD +D+K I+EIRAG GG Sbjct: 68 ALLGDK--DPELRELAKEELAQLRPQVEPAEEQLKLYLVPKDPNDEKDVIVEIRAGAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF ++ RMY RYA R W+VE++ +S GG KE T+SG V+S +K+ESGVH Sbjct: 126 EAGLFAAEVMRMYVRYAERRGWRVELMDTSGGALGGVKEATLTVSGDAVYSSLKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS TVAV+PEA EIDV + D+ +D R++GSGGQ VNTTDSA Sbjct: 186 RVQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+V EKSQ +NR AMK+LRA+L+++E++R + R A RK Q+G+GDR Sbjct: 246 VRLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQRSARDATRKSQVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R+TDHR+N T + L V+ G + D+I+ T + A+ + AS Sbjct: 306 SEKIRTYNFPQDRLTDHRVNYTRHNLPAVMDGDVQDVIDACRTFYAAQALREAS 359 >gi|170717669|ref|YP_001784745.1| peptide chain release factor 1 [Haemophilus somnus 2336] gi|189039976|sp|B0UUE6|RF1_HAES2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|168825798|gb|ACA31169.1| peptide chain release factor 1 [Haemophilus somnus 2336] Length = 360 Score = 285 bits (730), Expect = 6e-75, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 252/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R E+E + ES ++ + ++EYA + ++ + ++ Sbjct: 1 MKASIISKLESLKERHEELEALLGESSVINDQDKFRAYSKEYAQLEDVVKCFARWNWLNN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D +++++A++E+ + EI E ++ LLLPKD +D+ + LEIR Sbjct: 61 NIEETQLLL----DDPDMKEMAELEIEESKAEIENAEQQLQILLLPKDPNDEYNAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W+VEVL++++++ GGYKEI+ ++G GV+ ++K Sbjct: 117 AGTGGDEAGIFAGDLFRMYSRYAESKRWRVEVLNANESEQGGYKEIIVKVNGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPENEMPEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+V E+SQH+N+ +A+ VL +R+ E++R A ++ R+ Sbjct: 237 VNTTDSAVRITHIPTGIVVECQDERSQHKNKAKALSVLASRIAQAEQERQAQAQADTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS++IRTYN+ QGR+TDHRINLT+Y+L+ V+ G ID++I P++T +QA + Sbjct: 297 LLGSGDRSDKIRTYNYPQGRVTDHRINLTVYRLDEVMNGKIDELIQPIITEYQADQLAML 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|163850388|ref|YP_001638431.1| peptide chain release factor 1 [Methylobacterium extorquens PA1] gi|218528948|ref|YP_002419764.1| peptide chain release factor 1 [Methylobacterium chloromethanicum CM4] gi|240137464|ref|YP_002961935.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1] gi|254559642|ref|YP_003066737.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4] gi|226739112|sp|A9W1A4|RF1_METEP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790888|sp|B7L246|RF1_METC4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|163661993|gb|ABY29360.1| peptide chain release factor 1 [Methylobacterium extorquens PA1] gi|218521251|gb|ACK81836.1| peptide chain release factor 1 [Methylobacterium chloromethanicum CM4] gi|240007432|gb|ACS38658.1| peptide chain release factor RF-1 [Methylobacterium extorquens AM1] gi|254266920|emb|CAX22719.1| peptide chain release factor RF-1 [Methylobacterium extorquens DM4] Length = 361 Score = 285 bits (729), Expect = 6e-75, Method: Composition-based stats. Identities = 181/359 (50%), Positives = 250/359 (69%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M + ++ + R + ++++ + ++L+ E + + +++ I Y + Sbjct: 1 MTPIPSDRLDAILARHDIVTAQLADGSADAGSIVQLSRELSELDGVVAAIHHYRLAEANL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I + D E+R LA E E+ + + + +LLPKD D+KS ILEIRAG Sbjct: 61 AGIRAMIDEPGGDPEMRALAAEEKPEAEEALEQAHRALQLILLPKDAADEKSAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY RYA + W+VEV+S S+ GGY+E+VA + GR VFSR+KFE Sbjct: 121 TGGDEAALFAGDLFRMYARYAESKGWRVEVISESEGTAGGYREVVAEVKGRSVFSRLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+D+ + D++IDTMRA G+GGQHVN Sbjct: 181 SGAHRVQRVPDTETQGRIHTSAATVAVLPEAEEVDIVVNEADLKIDTMRAQGAGGQHVNK 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITHIPTG++V E+SQH+NR RAM +LR++L+D ER + R+A+RK Q+G Sbjct: 241 TESAIRITHIPTGVVVFVQEERSQHKNRARAMSLLRSKLFDAERTAKDSARAADRKAQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE V+ G +D++I+ L+T HQA+++ + Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVMAGQALDEVIDALVTEHQAELLAAEG 359 >gi|119505822|ref|ZP_01627888.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2080] gi|119458320|gb|EAW39429.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2080] Length = 362 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 164/361 (45%), Positives = 239/361 (66%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ + + + + + +L+ EY+ + ++ + Y Sbjct: 1 MKSSLTAKLASLVDRHEEVAALLGDPETAEDTNLFRELSREYSQLDEVVVAFTAYRTATA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+R++A E+ + + ++E+++ LLLP+D D + LEIR Sbjct: 61 DVEAAQEMLSD--SDPELREMAADELAVSTELVAKIESDLQVLLLPRDKRDSNNVYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W++E +S D GG+KEI++ + G V++ +K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAESKGWRLETISDRAGDHGGFKEIISRVVGNDVYAYLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+ +DI ED+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMAEPDDVEAIDIRKEDLRVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++V E+SQH+NR RAM +L ARL + +E++A R+ Sbjct: 239 VNTTDSAVRITHLPTGVVVECQDERSQHKNRARAMSLLSARLLTAAEDKAHSEQAAERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ ++QG +D ++ PL T HQA ++ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEIVQGQLDALVQPLRTEHQADLLAAL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|292493886|ref|YP_003529325.1| peptide chain release factor 1 [Nitrosococcus halophilus Nc4] gi|291582481|gb|ADE16938.1| peptide chain release factor 1 [Nitrosococcus halophilus Nc4] Length = 363 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L R E+ ++E + + + ++EYA + P+I +++ + Sbjct: 1 MKDSIRSKLENLAERQQELAALLAEPEIANDQKQFREFSQEYAQLEPVIGCFRDFEETQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D E+R LAQ EV E+++ +L+ E+ LLLP D +D ++ LEIR Sbjct: 61 ALNEAKALLKDQ--DPELRTLAQEEVAEAERKLEQLDQELQTLLLPSDPNDKRNIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAALF DL RMY RYA R W+ E++S S + GG+KE++ I G G +SR+K Sbjct: 119 AGIGGDEAALFASDLLRMYLRYAEQRGWRKEIISDSPGEYGGHKEVIIRIVGEGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PEA EID DI L D+RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPQTESQGRIHTSACTVAIMPEAEEIDDIDINLSDLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR+RAM +LRA+L E ++A E +A R+ Sbjct: 239 VNKTDSAIRITHLPTGIVVECQDERSQHKNRVRAMSLLRAKLKSKEETKLAAEEAATRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +L+G+++ +I+PL+ +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEILEGHLNAVIDPLIAEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|212640540|ref|YP_002317060.1| peptide chain release factor 1 [Anoxybacillus flavithermus WK1] gi|212562020|gb|ACJ35075.1| Protein chain release factor A [Anoxybacillus flavithermus WK1] Length = 361 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ + + ++ KL ++E + ++ + Y +++ D Sbjct: 6 DRLEAVEARYEKLNELLMDPEVLNDPKKLRDYSKEQSDLAETVQTYREYKSVREQLADAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++RD+ + E+ +E+ +L ++ LLLPKD +DDK+ I+EIR GG Sbjct: 66 AML-EEKLDPDMRDMVKEEISELEEREEQLVEKLKVLLLPKDPNDDKNVIMEIRGAAGGE 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ + GGYKEI+ I G+G +S++KFE+G H Sbjct: 125 EAALFAGDLYRMYTRYAESQGWKTEVIEAHPTGLGGYKEIIFMIQGKGAYSKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE EI+++I +DIR+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVACLPEMEEIEIEINEKDIRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 245 VRLTHIPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ VL+G +D+II+ L+ Q+K + A+ Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLEGKLDEIIDALILDDQSKKLEQAN 358 >gi|49188164|ref|YP_031417.1| peptide chain release factor 1 [Bacillus anthracis str. Sterne] gi|49480414|ref|YP_039322.1| peptide chain release factor 1 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140231|ref|YP_086598.1| peptide chain release factor 1 [Bacillus cereus E33L] gi|118480364|ref|YP_897515.1| peptide chain release factor 1 [Bacillus thuringiensis str. Al Hakam] gi|165871326|ref|ZP_02215975.1| peptide chain release factor 1 [Bacillus anthracis str. A0488] gi|167636684|ref|ZP_02394972.1| peptide chain release factor 1 [Bacillus anthracis str. A0442] gi|170688145|ref|ZP_02879356.1| peptide chain release factor 1 [Bacillus anthracis str. A0465] gi|170709368|ref|ZP_02899781.1| peptide chain release factor 1 [Bacillus anthracis str. A0389] gi|177651841|ref|ZP_02934424.1| peptide chain release factor 1 [Bacillus anthracis str. A0174] gi|217962818|ref|YP_002341396.1| peptide chain release factor 1 [Bacillus cereus AH187] gi|218906507|ref|YP_002454341.1| peptide chain release factor 1 [Bacillus cereus AH820] gi|225867310|ref|YP_002752688.1| peptide chain release factor 1 [Bacillus cereus 03BB102] gi|227818092|ref|YP_002818101.1| peptide chain release factor 1 [Bacillus anthracis str. CDC 684] gi|228917938|ref|ZP_04081474.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930337|ref|ZP_04093341.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936614|ref|ZP_04099408.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949050|ref|ZP_04111322.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094441|ref|ZP_04225513.1| Peptide chain release factor 1 [Bacillus cereus Rock3-42] gi|229124833|ref|ZP_04254011.1| Peptide chain release factor 1 [Bacillus cereus 95/8201] gi|229142072|ref|ZP_04270597.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST26] gi|229187555|ref|ZP_04314695.1| Peptide chain release factor 1 [Bacillus cereus BGSC 6E1] gi|229199455|ref|ZP_04326118.1| Peptide chain release factor 1 [Bacillus cereus m1293] gi|229601300|ref|YP_002869544.1| peptide chain release factor 1 [Bacillus anthracis str. A0248] gi|254686248|ref|ZP_05150107.1| peptide chain release factor 1 [Bacillus anthracis str. CNEVA-9066] gi|254724243|ref|ZP_05186027.1| peptide chain release factor 1 [Bacillus anthracis str. A1055] gi|254735257|ref|ZP_05192966.1| peptide chain release factor 1 [Bacillus anthracis str. Western North America USA6153] gi|254744460|ref|ZP_05202140.1| peptide chain release factor 1 [Bacillus anthracis str. Kruger B] gi|254755798|ref|ZP_05207830.1| peptide chain release factor 1 [Bacillus anthracis str. Vollum] gi|254762138|ref|ZP_05213984.1| peptide chain release factor 1 [Bacillus anthracis str. Australia 94] gi|301056797|ref|YP_003795008.1| peptide chain release factor 1 [Bacillus anthracis CI] gi|49182091|gb|AAT57467.1| peptide chain release factor 1 [Bacillus anthracis str. Sterne] gi|49331970|gb|AAT62616.1| peptide chain release factor 1 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973700|gb|AAU15250.1| peptide chain release factor 1 [Bacillus cereus E33L] gi|118419589|gb|ABK88008.1| bacterial peptide chain release factor 1 (bRF-1) [Bacillus thuringiensis str. Al Hakam] gi|164712993|gb|EDR18521.1| peptide chain release factor 1 [Bacillus anthracis str. A0488] gi|167527884|gb|EDR90706.1| peptide chain release factor 1 [Bacillus anthracis str. A0442] gi|170125716|gb|EDS94630.1| peptide chain release factor 1 [Bacillus anthracis str. A0389] gi|170667838|gb|EDT18590.1| peptide chain release factor 1 [Bacillus anthracis str. A0465] gi|172082545|gb|EDT67609.1| peptide chain release factor 1 [Bacillus anthracis str. A0174] gi|217065190|gb|ACJ79440.1| peptide chain release factor 1 [Bacillus cereus AH187] gi|218537315|gb|ACK89713.1| peptide chain release factor 1 [Bacillus cereus AH820] gi|225787237|gb|ACO27454.1| peptide chain release factor 1 [Bacillus cereus 03BB102] gi|227005978|gb|ACP15721.1| peptide chain release factor 1 [Bacillus anthracis str. CDC 684] gi|228584031|gb|EEK42186.1| Peptide chain release factor 1 [Bacillus cereus m1293] gi|228595922|gb|EEK53602.1| Peptide chain release factor 1 [Bacillus cereus BGSC 6E1] gi|228641361|gb|EEK97667.1| Peptide chain release factor 1 [Bacillus cereus BDRD-ST26] gi|228658624|gb|EEL14286.1| Peptide chain release factor 1 [Bacillus cereus 95/8201] gi|228688978|gb|EEL42805.1| Peptide chain release factor 1 [Bacillus cereus Rock3-42] gi|228810623|gb|EEM56972.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228823049|gb|EEM68887.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829323|gb|EEM74956.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841735|gb|EEM86846.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|229265708|gb|ACQ47345.1| peptide chain release factor 1 [Bacillus anthracis str. A0248] gi|300378966|gb|ADK07870.1| peptide chain release factor 1 [Bacillus cereus biovar anthracis str. CI] gi|324329278|gb|ADY24538.1| peptide chain release factor 1 [Bacillus thuringiensis serovar finitimus YBT-020] Length = 358 Score = 285 bits (729), Expect = 7e-75, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDAEMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 358 >gi|220915515|ref|YP_002490819.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans 2CP-1] gi|254790857|sp|B8JAU2|RF1_ANAD2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219953369|gb|ACL63753.1| peptide chain release factor 1 [Anaeromyxobacter dehalogenans 2CP-1] Length = 370 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 236/354 (66%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ ++ RF E+ +S+ D + K+ +E A+I ++ + Y + ++ + Sbjct: 8 KKLEAIEQRFEELTQLLSDPAVAGNGDRFRKVAKERASIEQTVTALRAYRKLLEDVEGNE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R+LA+ E+ + ++ E ++ L+PKD +D+K I+EIRAG GG Sbjct: 68 ALLADK--DPELRELAKEELAQLRPQVDPAEEQLKLYLVPKDPNDEKDVIVEIRAGAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF ++ RMY RYA R W+VE++ +S GG KE T+SG V+S +K+ESGVH Sbjct: 126 EAGLFAAEVMRMYVRYAERRGWRVELMDTSGGALGGVKEATLTVSGDAVYSSLKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS TVAV+PEA EIDV + D+ +D R++GSGGQ VNTTDSA Sbjct: 186 RVQRVPATEAQGRIHTSTVTVAVMPEAEEIDVQVNPADVEMDVFRSTGSGGQSVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+V EKSQ +NR AMK+LRA+L+++E++R + R A RK Q+G+GDR Sbjct: 246 VRLTHKPTGIVVKCQQEKSQLKNRTMAMKMLRAKLFEIEQERQRSARDATRKSQVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R+TDHR+N T + L V+ G + D+I+ T + A+ + AS Sbjct: 306 SEKIRTYNFPQDRLTDHRVNYTRHNLPAVMDGDVQDVIDACRTFYAAQALREAS 359 >gi|110640072|ref|YP_680282.1| peptide chain release factor 1 [Cytophaga hutchinsonii ATCC 33406] gi|119361529|sp|Q11NS4|RF1_CYTH3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110282753|gb|ABG60939.1| bacterial peptide chain release factor 1 (bRF-1) [Cytophaga hutchinsonii ATCC 33406] Length = 359 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 158/357 (44%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K+RF E+ + + + Y L +EY ++ I+ + Y + Sbjct: 1 MVDKLEAIKSRFDEVAEAILDPNIMSDMKRYASLNKEYKELNKIVEVYAQYKNILDNIES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 V+ D + R++A+ E+ + + ++E I LL+PKD +D K+ ILEIR GTG Sbjct: 61 SKKVLSVEK-DPDFREMAKEELETLAVQKDDIELVIKELLIPKDPNDSKNIILEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GD+FRMY+RY WK+E++ +++ GGYKEI+ ISG V+ ++KFESG Sbjct: 120 GDEASIFAGDIFRMYQRYCDRMGWKMELIDATEGTSGGYKEIICGISGEDVYGKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTSAA+VAVLPE E+DV + + DIR DT +SG GGQ VNTT Sbjct: 180 VHRVQRVPATETQGRIHTSAASVAVLPEVEELDVQLNMNDIRKDTFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+R+THIP+G +V EKSQ +N +A+KVLR+R+Y++E K+ +E R IGSG Sbjct: 240 SAIRLTHIPSGTVVQCQDEKSQIKNFEKALKVLRSRIYEIEYKKQQDELGKERNSMIGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS++IRTYN+ Q R+TDHRI T++ L V+ G IDD I L A A+ + ++ Sbjct: 300 DRSDKIRTYNYPQSRVTDHRIGHTVHNLPAVMDGNIDDFIEELRLAENAERLKEGAQ 356 >gi|124004130|ref|ZP_01688976.1| peptide chain release factor 1 [Microscilla marina ATCC 23134] gi|123990200|gb|EAY29699.1| peptide chain release factor 1 [Microscilla marina ATCC 23134] Length = 356 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + ++ Y KLT+EY + ++ K + Y + Sbjct: 1 MIDKLEAIKERFDEVGQLIVKPETIQDMDLYTKLTKEYKDLEKVVEKYNEYKIVLENIDT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E++++A++E+ + + ++E E+ LL+PKD +D K+ ILEIR G G Sbjct: 61 SKEILS-TEKDPEMKEMAKMELEELNPQKEKIEEELKTLLIPKDPNDSKNVILEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL RMY+R+A RKWK E++ +D GG+KE+V +ISG V+ MK+ESG Sbjct: 120 GDEAAIFAGDLLRMYQRFAEKRKWKFELMDFTDGSSGGFKEVVCSISGEDVYGMMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GRVHTSAA+VAVLPE +++V+I D+R D +SG GGQ VNTT Sbjct: 180 VHRVQRVPATETQGRVHTSAASVAVLPEMEDVEVNIDPSDVRSDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V EKSQ +N+ +AMKVLR++LY++E + E A RK +GSG Sbjct: 240 SAVRLTHIPTGIVVSCQDEKSQIKNKAKAMKVLRSKLYEIELSKQQEELGAQRKSMVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS++IRTYN+ QGR+TDHRI T++ L V+ G I D I L A A+ + S Sbjct: 300 DRSDKIRTYNYPQGRVTDHRIKYTVHNLPNVMDGEIADFIESLRLADNAEKMKS 353 >gi|47570471|ref|ZP_00241104.1| peptide chain release factor 1 [Bacillus cereus G9241] gi|228988555|ref|ZP_04148642.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229158891|ref|ZP_04286948.1| Peptide chain release factor 1 [Bacillus cereus ATCC 4342] gi|47552867|gb|EAL11285.1| peptide chain release factor 1 [Bacillus cereus G9241] gi|228624502|gb|EEK81272.1| Peptide chain release factor 1 [Bacillus cereus ATCC 4342] gi|228771172|gb|EEM19651.1| Peptide chain release factor 1 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 358 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDAEMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 358 >gi|300117843|ref|ZP_07055610.1| peptide chain release factor 1 [Bacillus cereus SJ1] gi|298724707|gb|EFI65382.1| peptide chain release factor 1 [Bacillus cereus SJ1] Length = 358 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPAIISDSNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMREMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 358 >gi|168185914|ref|ZP_02620549.1| peptide chain release factor 1 [Clostridium botulinum C str. Eklund] gi|169296113|gb|EDS78246.1| peptide chain release factor 1 [Clostridium botulinum C str. Eklund] Length = 357 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 249/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +N++ E+ +++S+ + + + KL +E++ + I++K Y K+E + Sbjct: 1 MLDKLDFTENKYEELSIKISDPSVMANQNEWRKLCKEHSELETIVTKYREYKGNKEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D +++++ Q E+ +E+ I E E+ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKEMLSEE-TDKDMKEMIQEEIKTLEENIVTDEEELKILLLPKDPNDDKNVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA WK E++S+++ D GG+KE+V + G +S+MKFESG Sbjct: 120 GDEAALFAANLFRMYTRYAERHGWKTELMSANETDIGGFKEVVFMLRGDSAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D+ I DIR+D RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V EKSQ +N+ +AMKVL+ARLY+ + SA+RK Q+G+G Sbjct: 240 SAVRMTHIPTGIVVSCQDEKSQLKNKEKAMKVLKARLYEKAEAERSASISADRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+T+HRI LTLYKLE L G ++++I+ L+TA QA+ + + Sbjct: 300 DRSERIRTYNYPQGRVTEHRIGLTLYKLEAFLDGDMEEVIDALITAEQAEKMKAMG 355 >gi|86570230|gb|ABD04787.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas palustris HaA2] Length = 373 Score = 285 bits (729), Expect = 8e-75, Method: Composition-based stats. Identities = 182/358 (50%), Positives = 257/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ + + Y+++T E + ++P++ + Y + + E Sbjct: 13 MSNLPEAKLDVLLAHHASLEAQLLGEVAANDYVRITRELSELNPLVEAVKAYREVRDELG 72 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D +D E+R +A+ E A++ +L +I LLPKD D+++ +LEIRAGT Sbjct: 73 DIDDLLEDPATDPEMRAMAEAERDALDAHREDLIQQIRVALLPKDAMDERNVMLEIRAGT 132 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GG+KEI+A + GRG F+++KFES Sbjct: 133 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFES 192 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE E+DVDI +D++IDTMRA G+GGQHVN T Sbjct: 193 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKT 252 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD E++R+ + RSA RK ++GS Sbjct: 253 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRIDSARSAERKQKVGS 312 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQ + + Sbjct: 313 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQVAQLAAQG 370 >gi|89073091|ref|ZP_01159630.1| peptide chain release factor 1 [Photobacterium sp. SKA34] gi|89051044|gb|EAR56501.1| peptide chain release factor 1 [Photobacterium sp. SKA34] Length = 362 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + L++EY+ + + Y Q K+ Sbjct: 1 MKQSILVKLETLVERYEEVQHLLGDPSVLADQNRFRALSKEYSQLEEVTKCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ + EI L +E+ LL+PKD +DD++C +EIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++E+++ + ++ GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAERRGWRIEIINENRSEQGGYKEMIAKVNGDGAYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAVLPE E + +I D+RIDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVLPEIPEAEIPEINAGDLRIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRNAEEASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRI LTLY+L V++G +D +I P+ T +QA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRITLTLYRLNEVMEGDLDALIQPVFTEYQADQLAAM 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|85713812|ref|ZP_01044802.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A] gi|85699716|gb|EAQ37583.1| Peptide chain release factor 1 [Nitrobacter sp. Nb-311A] Length = 358 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 197/356 (55%), Positives = 260/356 (73%), Gaps = 2/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ L R A +E + S D Y+++T E A ++P++ + + E + Sbjct: 1 MLPEAKLDLLLARHAALENELLSHVSADRYVQMTRELAELNPVVEAVKDWRAITAEIAGI 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D +D+E+R +A+ E A+E EL +I LLPKD D+++ +LE+RAGTGG Sbjct: 61 DAMIADPATDAEMRAMAEAERPALEARNNELMQQIRIALLPKDAMDERNVMLEVRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDLFRMYER+AAL+ WKVEV+S+S+ GGYKEIVA + GRG +++MKFESGV Sbjct: 121 DEASLFAGDLFRMYERFAALQGWKVEVISASEGTMGGYKEIVAEVQGRGAYAKMKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GRVHTSAATVAVLPEA E+DV+I +D+RI+TMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTEAQGRVHTSAATVAVLPEAEEVDVEIKPDDLRIETMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTGI+V +SQH+NR AM +LR+R+YDVER+R+ RSA+RK Q+GSGD Sbjct: 241 AIRITHIPTGIVVNMQDSRSQHKNRASAMNILRSRIYDVERQRINAARSADRKDQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + + S Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGDALHELIDALTTEHQAAQLAAES 356 >gi|85709577|ref|ZP_01040642.1| protein chain release factor A [Erythrobacter sp. NAP1] gi|85688287|gb|EAQ28291.1| protein chain release factor A [Erythrobacter sp. NAP1] Length = 355 Score = 285 bits (728), Expect = 8e-75, Method: Composition-based stats. Identities = 181/357 (50%), Positives = 250/357 (70%), Gaps = 7/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + NRFAE+E RM+ + ++ + +YA + P+ ++E + L Sbjct: 3 IPPERLDQIANRFAELEARMASGTLEGEEFVAASRDYAELEPVAKIAGEVKAMREEIEGL 62 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E++ +A+ E+ AI + + E E + LLP+D D K +LEIRAGTGG Sbjct: 63 EEMLA----DPEMKAMAEEELSAIREALPEKERSLAIALLPRDRADAKPAMLEIRAGTGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMYE+YAA + W+VE +S S ++ GG+KEIVA +SG+GVF+++KFESGV Sbjct: 119 DEAALFAGDLFRMYEKYAAEQGWRVEPVSMSASEVGGFKEIVANVSGQGVFAKLKFESGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV I D++IDT RASG+GGQHVNTTDS Sbjct: 179 HRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVQIDPGDLKIDTYRASGAGGQHVNTTDS 238 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH PTG++V +SQH+NR +AM+VLRARLY+ R + RK +GSGD Sbjct: 239 AIRITHEPTGLVVTCQDGRSQHKNREKAMQVLRARLYEKTRDEAQGAEAEARKAMVGSGD 298 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRI LTL+KLE VL G +D++++ L+ + K + + +E Sbjct: 299 RSERIRTYNFPQGRVTDHRIGLTLHKLEEVLAGPGLDELVDALIAEDEGKRLAALAE 355 >gi|325263710|ref|ZP_08130443.1| peptide chain release factor 1 [Clostridium sp. D5] gi|324030748|gb|EGB92030.1| peptide chain release factor 1 [Clostridium sp. D5] Length = 357 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E + + KL +E + ++PI+ Y + KQ +D Sbjct: 3 DRLEDLLIRYEEVMGELQEPDVANDPVRFRKLMKEQSDLNPIVEAYREYKKSKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++A+ E+ + + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AMLEEESD-EEMREMAKEELNDSKARVEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WKVE++S ++N GG+KE V I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYAEGRRWKVEMISLNENGIGGFKECVFMITGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAIMPEAEEVDVVIEEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++L+D+E ++ + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLFDLELEKQQASEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D+II+ L+ A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDTILNGDLDEIIDSLIAADQAAKLANMNE 356 >gi|297539749|ref|YP_003675518.1| peptide chain release factor 1 [Methylotenera sp. 301] gi|297259096|gb|ADI30941.1| peptide chain release factor 1 [Methylotenera sp. 301] Length = 360 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 184/362 (50%), Positives = 254/362 (70%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R EI MS ++D Y KLT+E+A I+PI+ + +++Q + Sbjct: 1 MKPSMIRKLATLSERLEEINRLMSSEGVTNNMDNYRKLTQEHAEITPIVEQYHLFEQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +++ SD ++++ AQ E+ A ++++ ++E + LLLPKD +DDK+ LEIR Sbjct: 61 DIKEAQSML----SDPDMKEFAQEEIEAGKEKLEQVEKSLQVLLLPKDPNDDKNLFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ LF GDLFRMY RYA +KWKVE++S+++++ GGYKEI+A I G G +S++K Sbjct: 117 AGTGGDESGLFCGDLFRMYSRYAEKQKWKVEIMSANESEVGGYKEIIAKIEGYGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVLPEA E DV I DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPDTETQGRIHTSACTVAVLPEADEVSDVVINPADIRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH PTGI+V +SQH N+ +AM VL AR+ + ++ ++ RK Sbjct: 237 INKTDSAVRITHAPTGIVVECQEGRSQHANKAQAMAVLAARIKAKQVDEQNSKIASERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGRITDHRINLTLYK++ + +G +D++I L HQA ++ S Sbjct: 297 LIGSGDRSERIRTYNYPQGRITDHRINLTLYKIDAITEGDMDELIGALSAEHQADLLASL 356 Query: 356 SE 357 E Sbjct: 357 GE 358 >gi|323704815|ref|ZP_08116392.1| peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535741|gb|EGB25515.1| peptide chain release factor 1 [Thermoanaerobacterium xylanolyticum LX-11] Length = 353 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 180/355 (50%), Positives = 252/355 (70%), Gaps = 7/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ +D + K+ +E A + I+ K Y + K + + Sbjct: 1 MIDKLKAIEDRYVELSQKLSDPESMKDMDEWKKMAKEQAGLEEIVQKYREYKKVKDDIES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D E++D+A+ E+ ++E++ L NEI LLLPKD +D+K I+EIRAG G Sbjct: 61 TKELI---EMDDELKDMAEDELKSLEEKEESLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA ++WK E++SS+ + GG+KE++ +I+G+G +SR+KFESG Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKRWKYEIMSSNATELGGFKEVIFSIAGKGAYSRLKFESG 177 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TEA GR+HTS ATVAVLPE ++D++I DI+ID R+ G GGQ VNTTD Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVNTTD 237 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI++ E+SQ QNR RAMK+LRA+LY++ R+ E S RKLQ+G+G Sbjct: 238 SAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEREISMTRKLQVGTG 297 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRI LTLYKL+ VL G +D+II+ LL QA+ + S Sbjct: 298 DRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDGDLDEIIDALLAEDQAERLESM 352 >gi|148555445|ref|YP_001263027.1| peptide chain release factor 1 [Sphingomonas wittichii RW1] gi|166223608|sp|A5V9C3|RF1_SPHWW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148500635|gb|ABQ68889.1| bacterial peptide chain release factor 1 (bRF-1) [Sphingomonas wittichii RW1] Length = 360 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 185/358 (51%), Positives = 255/358 (71%), Gaps = 3/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEE 59 M ++ +I ++ R E++ M+ +++L+++YA I P+ + + E Sbjct: 1 MAGITSARIAQIEARRDELQALMARGDLPSDQFVQLSKDYAEIEPVAQAAGEVRRLRAEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + D D+E+R +A E I + E E + LLP+D D++S +LEIRAG Sbjct: 61 DVLKGMAEDEAGDAELRAMAIEEAEEIRARLPEAERALALKLLPRDAADERSAMLEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY+RYA R W+VE++S+S D GGYKE+VA+++G GVF+R+KFE Sbjct: 121 TGGDEAALFAGDLFRMYQRYAEDRGWRVELISASAADLGGYKEVVASVTGAGVFARLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTSAATVAVLPEA E+DV I +D+RID R+SG GGQ VNT Sbjct: 181 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVHIDDKDLRIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V EKSQH+N+ +A+KVLR RLY++ER+R+A+ER+ RK +G Sbjct: 241 TDSAVRITHLPTGLVVIQQDEKSQHKNKAKALKVLRTRLYEMERERLASERAGARKSMVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYNF QGR+TDHRINLTL++L +L+G +DD++ L+ +A+ + Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRINLTLHRLSEILEGPGLDDLVGALIAEDEAERLAQL 358 >gi|284047800|ref|YP_003398139.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM 20731] gi|283952021|gb|ADB46824.1| peptide chain release factor 1 [Acidaminococcus fermentans DSM 20731] Length = 358 Score = 285 bits (728), Expect = 9e-75, Method: Composition-based stats. Identities = 164/352 (46%), Positives = 243/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL++R+ ++E ++S+ + K T+ +A ++ I++ Y + +D Sbjct: 6 DKLQDLEDRYLDLEAKISDPEVIARQEEWLKYTKAHAKLTEIVTVYREYKKLVDTWKDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E+ +A+ E+ ++ + E ++ LLLP+D +D+K+ I+EIRAG GG Sbjct: 66 AIVK-AREDQELTAMAEEEMQELQPRLEAYEEKLTLLLLPRDPNDEKNIIMEIRAGAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA + WKVE++ SS GG+KE+V +SG V+S MKFESGVH Sbjct: 125 EAALFAGDLFRMYTRYAEQKGWKVELMDSSPTGLGGFKEVVFMVSGTDVYSHMKFESGVH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS TVAV+PEA E+D+++ DIR+DT RA G+GGQ+VN T+SA Sbjct: 185 RVQRVPDTESQGRVHTSTVTVAVMPEAQEVDIELNPADIRVDTYRAGGAGGQYVNKTESA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+ EKSQ +NR + ++VLR+R+ + E+++ +A RK Q+G+GDR Sbjct: 245 VRMTHIPTGIVAQCQDEKSQAKNREKCLRVLRSRILEAEQEKQRAATAAERKSQVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ QGR+TDHRI LTL+KL ++ G +D++++ L+ A QAK + Sbjct: 305 SERIRTYNYPQGRVTDHRIGLTLHKLPDIINGDLDELLDALMMAEQAKKLQQ 356 >gi|288574777|ref|ZP_06393134.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570518|gb|EFC92075.1| peptide chain release factor 1 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 358 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 178/359 (49%), Positives = 247/359 (68%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEE 59 ++ ++ EIE +M++ +L +++A +S I+ Y + + E Sbjct: 1 MKLDDKLQEIAATHEEIEHKMADPSVTSNPKELQSLGKKHAELSEIVEAYEEYKRIRSEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ ++ + D E+ LA+ EV ++E + E E ++ LLLPKD +DDKS ++EIRAG Sbjct: 61 EEAKALL--DSDDPEMAQLAKEEVHSLEPLLEEQEKKVTLLLLPKDPNDDKSVMVEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DLFRMY R+A R+W VE+L +++ + GGYKEIV + G+G +S +K+E Sbjct: 119 TGGDEAALFASDLFRMYSRFAEQRRWSVEILDANETEIGGYKEIVFKVDGQGAYSDLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVPATE+ GR+HTSAATVAVLPEA E DV++ ED++IDT R+SG+GGQHVN Sbjct: 179 SGVHRVQRVPATESGGRIHTSAATVAVLPEAEEFDVEVRQEDLKIDTYRSSGAGGQHVNM 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V E+SQ +NR RAM LR +LYD+E+++ + + RK QIG Sbjct: 239 TDSAVRITHLPTGIVVTCQDERSQIKNRARAMAFLRTKLYDMEQRKRQDAEAQERKGQIG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF Q RITDHRI LTLYKL+ + G I +++ L A QA+ + + Sbjct: 299 SGDRSERIRTYNFPQNRITDHRIGLTLYKLDAAMGGSITELVEALRMAEQAERMKDLDD 357 >gi|222053788|ref|YP_002536150.1| peptide chain release factor 1 [Geobacter sp. FRC-32] gi|221563077|gb|ACM19049.1| peptide chain release factor 1 [Geobacter sp. FRC-32] Length = 356 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 255/355 (71%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I +L+ R+ E+E +S+ + + KL+ E+ +S ++ Y + E + Sbjct: 4 DKIEELERRYQELEALLSDPVVLGNQPEFRKLSREHFDLSALVQAYRNYKRIISEIEGNR 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ ++EK+ LE+EI LLLPKD +DDKS ILEIRAGTGG Sbjct: 64 ELLA----DPEMKEMAEAELESLEKQRDALESEIKLLLLPKDPNDDKSVILEIRAGTGGD 119 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY R+A +W+VEV+SSS+++ GG+KE+VA++ G GVF+++K+ESG H Sbjct: 120 EAALFAGDLFRMYSRFAETNRWRVEVISSSESEKGGFKEVVASVEGEGVFAKLKYESGTH 179 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVA++PEA ++D+DI D++ID R+SG+GGQHVNTTDSA Sbjct: 180 RVQRVPETEAQGRIHTSACTVAIMPEAEDVDIDINPTDLKIDVYRSSGAGGQHVNTTDSA 239 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG +V E+SQ +NR +AMKVL+ R+ D + + +A+RK Q+GSGDR Sbjct: 240 VRITHLPTGTVVACQEERSQIKNRAKAMKVLKTRILDNILQEQNAKLAADRKQQVGSGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I + L +Q + + + SE Sbjct: 300 SERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIAEIADALRAHYQMEALQAQSE 354 >gi|261343909|ref|ZP_05971554.1| peptide chain release factor 1 [Providencia rustigianii DSM 4541] gi|282568295|gb|EFB73830.1| peptide chain release factor 1 [Providencia rustigianii DSM 4541] Length = 360 Score = 285 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EI+ ++++ + D + L++EYA ++ + + + + +++ + Sbjct: 8 KLEALQERYEEIQAHLADAGVIADQDRFRALSKEYAQLTDVANCFTAWQAVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ ++ ELE ++ LLLPKD DD+ +C +EIRAG GG E Sbjct: 68 LL----DDPEMKEMAQEELKDAKERNEELEQQLQLLLLPKDPDDEYNCFVEIRAGAGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +W+VE++S+SD + GGYKE++A ISG V+ R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESNRWRVELMSTSDGEHGGYKEVIAKISGDSVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA T+AVLPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTIAVLPELPEAELPEISPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRQAEMAKRHEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPIINEYQADQLSALSE 358 >gi|212711979|ref|ZP_03320107.1| hypothetical protein PROVALCAL_03055 [Providencia alcalifaciens DSM 30120] gi|212685501|gb|EEB45029.1| hypothetical protein PROVALCAL_03055 [Providencia alcalifaciens DSM 30120] Length = 360 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EIE ++++ + D + L++EYA ++ + + + + + + Sbjct: 8 KLEALQERYEEIEAHLADAGVIADQDRFRALSKEYAQLTDVAKCFTAWRTVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ ++ ELE ++ LLLPKD DD+ +C +EIRAG GG E Sbjct: 68 LL----DDPEMKEMAQEELKEAKERNEELEQQLQLLLLPKDPDDEYNCFVEIRAGAGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +W+VE++S+SD + GGYKE++A ISG V+ R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESNRWRVELMSTSDGEHGGYKEVIAKISGDSVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA T+A+LPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTIAILPELPEAELPEISPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRQAEMDKRHAAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPIINEYQADQLSALSE 358 >gi|149377994|ref|ZP_01895719.1| peptide chain release factor 1 [Marinobacter algicola DG893] gi|149357703|gb|EDM46200.1| peptide chain release factor 1 [Marinobacter algicola DG893] Length = 361 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 251/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ +S+ ++ D + L+ E+A I PI+ + + + Sbjct: 1 MKSSIQSRLEQLVDRFEEVSALLSDQGTIANQDKFRDLSREFAEIEPIVHCFQAWQKSRD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + D D+++R +A+ E+ E++ EL+ E+ L+LPKD +D K+ LE+R Sbjct: 61 DVKEATELARD--GDADMRAMAEEELGLAEQKGEELDEELQRLMLPKDPNDGKNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLF+MY RYA ++W+VEV+S+S+ + GGYKE++A I+G V+ +K Sbjct: 119 AGTGGDEAAIFAGDLFKMYMRYAERQRWQVEVISASEGEHGGYKEVIARIAGSAVYGALK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E + +I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADETEAVEINKSDLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V E+SQH+NR +AM L +RL + E +R +A RK Sbjct: 239 VNKTDSAIRITHIPTGIVVECQEERSQHKNRAKAMSFLASRLQNEEIERQQKTMAATRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D +I PL HQA ++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVISGDLDAVIMPLQQEHQADLLASL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|323496829|ref|ZP_08101866.1| peptide chain release factor 1 [Vibrio sinaloensis DSM 21326] gi|323318088|gb|EGA71062.1| peptide chain release factor 1 [Vibrio sinaloensis DSM 21326] Length = 362 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMANE--DDEEMREMAQEEIKEAKDAIERLSDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W+VEV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIIQAEEAKRAAEESDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLTLY+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTLYRLNEVMEGDVSSLIDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|16080754|ref|NP_391582.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. 168] gi|221311662|ref|ZP_03593509.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. 168] gi|221315990|ref|ZP_03597795.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320901|ref|ZP_03602195.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325185|ref|ZP_03606479.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313251|ref|YP_004205538.1| peptide chain release factor 1 [Bacillus subtilis BSn5] gi|1172909|sp|P45872|RF1_BACSU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|853776|emb|CAA89884.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. 168] gi|2636226|emb|CAB15718.1| peptide chain release factor 1 [Bacillus subtilis subsp. subtilis str. 168] gi|291486285|dbj|BAI87360.1| peptide chain release factor 1 [Bacillus subtilis subsp. natto BEST195] gi|320019525|gb|ADV94511.1| peptide chain release factor 1 [Bacillus subtilis BSn5] Length = 356 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 161/356 (45%), Positives = 235/356 (66%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y ++ D Sbjct: 1 MLDRLKSIEERYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVDVYRQYRDASEQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D+E+RD+ + E+ ++KE L + LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAML-EEKLDAEMRDMVKEEISELQKETETLSERLKVLLIPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA L+ WK EV+ ++ GGYKEI+ I+G G +S++K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAELQGWKTEVMEANVTGTGGYKEIIFMITGSGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +GSG Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+++ L+ QA + + Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEALIVEDQASKLQQSE 355 >gi|254491165|ref|ZP_05104346.1| peptide chain release factor 1 [Methylophaga thiooxidans DMS010] gi|224463678|gb|EEF79946.1| peptide chain release factor 1 [Methylophaga thiooxydans DMS010] Length = 362 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 177/361 (49%), Positives = 248/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R EI +++ + + L++EYA + P++S + Y Sbjct: 1 MKESIKNKLESLVDRHEEIAGLLADPDTMADQNKFRTLSQEYAQLEPVVSNFTAYRHTLS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D + ++ D+E+R++A+ E+ E+ ELE + LLLPKD +D ++ LEIR Sbjct: 61 AIEDANLML--EEDDAEMREMAREELNQAEQTQEELELSLQKLLLPKDPNDQRNIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA +R+WKVEV+++ + + GGYKE++ I G G +SR+K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSKYAEVRRWKVEVINAQEGEHGGYKEMICRIVGEGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA+LPE EID DI DIR+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAILPEVDEIDAVDINPADIRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +AM VL++R+ + ++ E++ RK Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKAMSVLQSRIMAEQVQKQEAEQAETRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGRITDHRINLTLYKL +++G +D +I PL+ +QA + Sbjct: 299 LVGSGDRSERIRTYNYPQGRITDHRINLTLYKLNEIVEGDLDQVIEPLINEYQADQLALL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|148266072|ref|YP_001232778.1| peptide chain release factor 1 [Geobacter uraniireducens Rf4] gi|189039974|sp|A5G8T7|RF1_GEOUR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146399572|gb|ABQ28205.1| bacterial peptide chain release factor 1 (bRF-1) [Geobacter uraniireducens Rf4] Length = 355 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 254/355 (71%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I +L+ R+ E+E +++ + + KL+ E++ +S ++ Y + E Sbjct: 3 EKIEELERRYQELEALLADPAVLGNQPEFRKLSREHSDLSALVESYRNYKKVLVEITGNR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ A+E++ LE EI LLLPKD +D+KS ILEIRAGTGG Sbjct: 63 ELLA----DPEMKEMAEAELEALEEQQAALEAEIKLLLLPKDPNDNKSVILEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA +W+VEV+S+S+++ GG+KEIVA++ G GVF+++K+ESG H Sbjct: 119 EAALFAGDLFRMYGRYAESNRWRVEVISASESEKGGFKEIVASVEGDGVFAKLKYESGTH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVA++PEA ++D+DI D++ID R+SG+GGQHVNTTDSA Sbjct: 179 RVQRVPETEAQGRIHTSACTVAIMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNTTDSA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG +V E+SQ +NR +AMKVL+ R+ D + + +A+RK Q+GSGDR Sbjct: 239 VRITHLPTGTVVACQEERSQIKNRAKAMKVLKTRILDTIMQEQSARLAADRKQQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I + L +Q + + SE Sbjct: 299 SERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIGEITDSLRVYYQMEALKQQSE 353 >gi|114569197|ref|YP_755877.1| peptide chain release factor 1 [Maricaulis maris MCS10] gi|119361557|sp|Q0ARZ8|RF1_MARMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114339659|gb|ABI64939.1| bacterial peptide chain release factor 1 (bRF-1) [Maricaulis maris MCS10] Length = 357 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 178/354 (50%), Positives = 263/354 (74%), Gaps = 3/354 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + +RF ++E R+ + D +KL++E+A + P+ K + + E +L Sbjct: 4 PEARLAQVIDRFDQVEARLGAAGDADEIVKLSKEHAELKPVAEKANALKSARAELAELAE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D+E+ ++A+ E A+++ + ELE+ ++ +LLPKD DD + ++EIRAGTGG E Sbjct: 64 MM--EGDDAEMAEMAREEFYALKERLPELEHAMSLMLLPKDKDDSANAMIEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F G+L+ MY+RYA L+ W E++S+S+ + GGYKE+VA ISG GVF R+KFESGVHR Sbjct: 122 AAIFAGNLYGMYQRYAQLQGWSWELVSASEGEHGGYKEVVAAISGNGVFGRLKFESGVHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVA++P+ +ID+++ + D+R+DTMRASG+GGQHVN TDSAV Sbjct: 182 VQRVPATESQGRIHTSAATVAIMPQPEDIDIELDMGDVRVDTMRASGAGGQHVNKTDSAV 241 Query: 245 RITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 R+THIPTG++V EKSQHQNR RA ++L+A+LYD++R+ ER+A RK QIGSGDRSE Sbjct: 242 RMTHIPTGLVVVCQEKSQHQNRARAQEILKAKLYDMQREAANAERAAERKGQIGSGDRSE 301 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 RIRTYN+ QGR++DHRINLTLYKL+ ++ G +D+++ L+ QA + + + Sbjct: 302 RIRTYNYPQGRVSDHRINLTLYKLDDIVAGDGLDEVVAALIAEDQAARLAALED 355 >gi|295111719|emb|CBL28469.1| bacterial peptide chain release factor 1 (bRF-1) [Synergistetes bacterium SGP1] Length = 357 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 170/359 (47%), Positives = 238/359 (66%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEE 59 ++ ++ F +IE RM + + L ++ A + P++ K Y Sbjct: 1 MNIEPKLQAIEKEFLDIEERMGDPATASDPRALQDLGKKRAQLEPVVEKYRAYRAAVASI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ D EI +LA+ E+ +E +I E E+ LLLPKD +D+KS I+EIRAG Sbjct: 61 AEARDLLK--GGDPEIAELAREELSELEPQIENFEKELTILLLPKDPNDEKSVIVEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DL+RMY R+ ++WK+EV+ SS GGYKE++ I G +S MK+E Sbjct: 119 VGGDEAALFAADLYRMYTRFCERQRWKIEVIDSSLIGLGGYKEVIFRIDSHGAYSMMKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TEASGR+HTS+ATVAV+PE +I+++I ED+++DT R+SG+GGQHVN Sbjct: 179 SGGHRVQRVPVTEASGRIHTSSATVAVMPEVEDIEIEIRPEDLKVDTYRSSGAGGQHVNM 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+ E+SQ +NR RAM L+ARLY +E+++ E+++ R+ IG Sbjct: 239 TDSAVRITHLPTGIVATCQDERSQIKNRARAMAYLKARLYALEQEKQNAEQASERRGMIG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF Q RITDHRINLTLYKL+ L G + ++I+ ++ A Q + + E Sbjct: 299 SGDRSERIRTYNFPQNRITDHRINLTLYKLDNYLDGDLFEMIDAMILAEQTQKLEHLEE 357 >gi|229087819|ref|ZP_04219935.1| Peptide chain release factor 1 [Bacillus cereus Rock3-44] gi|228695494|gb|EEL48363.1| Peptide chain release factor 1 [Bacillus cereus Rock3-44] Length = 358 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEIISDSNKLREYSKEQSDIQDTVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+RD+ + EV +E + +EL + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AML-EEKLDAEMRDMVKEEVSELEGQEKELSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|188590258|ref|YP_001919883.1| peptide chain release factor 1 [Clostridium botulinum E3 str. Alaska E43] gi|238689644|sp|B2UZI5|RF1_CLOBA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|188500539|gb|ACD53675.1| peptide chain release factor 1 [Clostridium botulinum E3 str. Alaska E43] Length = 360 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 250/357 (70%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E A + I++ Y Q ++ Q Sbjct: 1 MLLDKLAFIENKYDELSVKISDPSIMQNQNEWRKLCKEQADLEIIVNAYKEYKQVIEDLQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D SD E++++ E+ ++ + ELE EI LLLPKD +DDK+ +EIR G Sbjct: 61 VNKEMLSDE-SDREMKEMLNEEISSLAEREIELEKEIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W E++S ++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGDEAALFAYNLFRMYTRYAERQRWSTEIMSLNETDIGGFKEVVFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS TVAVLPE +++++I +D+RID RASG GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTVTVAVLPEVDDVEIEIADKDVRIDVFRASGHGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V EKSQ +N+ +AMKVLR+RL++ + A+ +A+RK Q+G+ Sbjct: 240 DSAVRITHLPSGLVVSCQDEKSQLKNKEKAMKVLRSRLFEKAEQERADGIAADRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGRITDHRI LTLYKL+ L G + ++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNYPQGRITDHRIGLTLYKLDSFLDGEVQEMINALITADQAEKMQKMG 356 >gi|114319440|ref|YP_741123.1| peptide chain release factor 1 [Alkalilimnicola ehrlichii MLHE-1] gi|119361505|sp|Q0AC04|RF1_ALHEH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114225834|gb|ABI55633.1| bacterial peptide chain release factor 1 (bRF-1) [Alkalilimnicola ehrlichii MLHE-1] Length = 361 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 244/361 (67%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R EI ++E + L+ EYA + P+I++++ Y + +Q Sbjct: 1 MKASIRNKLERLRERHEEISALLAEPDTASDQKRFAALSREYAQLEPVIAELNHYQETEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D D EIR++A+ E+ + + LE E+ LLLP D +D ++ LEIR Sbjct: 61 ALASAREMARD--DDLEIREMAEEEISQAQARLEALEAELQVLLLPPDPNDGRNLYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA W++E +S+S+ + GGYKE++ ISG G +SR+K Sbjct: 119 AGTGGDEAALFAGDLLRMYARYAERHGWRLEEISASEGEQGGYKEVITRISGEGAWSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE ++ ++R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDAVEDITINPAELRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V SE+SQH+NR +A+ +L+ARL + ++ + +++ R+ Sbjct: 239 VNKTDSAIRITHLPTGVVVECQSERSQHKNRAQALALLQARLKNAQQAEQSAQQTEQRRQ 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGRITDHRINLTLY+LE +LQG +D ++ PL T HQA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRITDHRINLTLYRLEEILQGDLDQLVEPLRTEHQADQLAAL 358 Query: 356 S 356 + Sbjct: 359 A 359 >gi|75762680|ref|ZP_00742519.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74489826|gb|EAO53203.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 358 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + I + Y +++ +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDTNKLREYSKEQSDIQETVEVYREYKDVREQLKDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+RD+ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AML-EEKLDAEMRDMVKEEVSELESQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+ F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKRAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRXHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQRMEAAE 358 >gi|332663960|ref|YP_004446748.1| peptide chain release factor 1 [Haliscomenobacter hydrossis DSM 1100] gi|332332774|gb|AEE49875.1| Peptide chain release factor 1 [Haliscomenobacter hydrossis DSM 1100] Length = 358 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 233/357 (65%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + +R+ +E +MS+ +D Y K+++ Y + PI+ IY Sbjct: 1 MLEKLEAIYDRYLNLEEQMSDPDIIVDMDRYKKVSKNYKDLKPIVEAFLIYRNLVGNRDS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D D E+R++AQ E+ ++ +I ELE++I +LL+PKD +D + I EIR+GTG Sbjct: 61 AKQALSDE--DPEMREMAQEELESLNPQIEELEDKIKFLLIPKDPEDSRDVIFEIRSGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF GDL+RMY RY + WKV + ++ GGY ++V I+G V+ +KFESG Sbjct: 119 GDEASLFAGDLYRMYTRYFESKGWKVSAMEINEGSVGGYNKLVLEINGEDVYGTLKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GRVHTSAATV V+P+ D++I ED++ DT R+SG+GGQHVN T+ Sbjct: 179 AHRVQRVPKTESQGRVHTSAATVVVMPKLEMEDLEIRKEDLKTDTFRSSGAGGQHVNKTE 238 Query: 242 SAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 S VR TH+PTG++ ++ +SQ QNR A++ L ++Y++ R+ +E++A RK +GSG Sbjct: 239 SGVRFTHLPTGVVSESTDGRSQIQNREIALQRLYQKIYEMRRQAHESEQAAKRKSLVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS++IRTYNF Q R+TDHRINLT+Y L+ VL+G ++ II L + + + E Sbjct: 299 DRSDKIRTYNFPQNRVTDHRINLTIYSLDKVLEGDLEAIIEGLQLYENTEKLKAGEE 355 >gi|34539945|ref|NP_904424.1| peptide chain release factor 1 [Porphyromonas gingivalis W83] gi|46576709|sp|Q7MXT5|RF1_PORGI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|34396256|gb|AAQ65323.1| peptide chain release factor 1 [Porphyromonas gingivalis W83] Length = 361 Score = 284 bits (727), Expect = 1e-74, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 227/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++RF EI +++ + + KL++EY + I + Y ++ Sbjct: 8 DRLDGLESRFEEISTLITDPAVIADMKRFTKLSKEYRDLEKIHTAGRDYRNLLANIEEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + SD E+R++A+ + + + LE EI LL+P + +DDK+ I+EIR GTGG Sbjct: 68 HTMA-KESDEELREMAREMLAEANERLPILEEEIKMLLIPANPEDDKNAIVEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY +Y + W+VEV S+ GGYKEIV ++ G GV+ +K+ESGVH Sbjct: 127 EAALFAGDLYRMYVKYCESKGWQVEVTDLSEGATGGYKEIVFSVKGEGVYGILKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA E+DV+I DI + T R+ G+GGQ+VN ++ Sbjct: 187 RVQRVPATETQGRIHTSAATVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNVNKVETK 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V++TH PTG++V +SQ NR AM++LR++LYD+E + +A RK + +GDR Sbjct: 247 VQLTHKPTGMVVVCQQARSQIANRELAMQMLRSKLYDIELSKHNEAIAARRKTMVSTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S +IRTYN+ QGR+TDHRIN+T+Y L V+ G + I+ L+ A + + A+ Sbjct: 307 SAKIRTYNYPQGRVTDHRINMTVYNLSAVMDGEVQPFIDALIIAENVERMKEAA 360 >gi|312131222|ref|YP_003998562.1| bacterial peptide chain release factor 1 (brf-1) [Leadbetterella byssophila DSM 17132] gi|311907768|gb|ADQ18209.1| bacterial peptide chain release factor 1 (bRF-1) [Leadbetterella byssophila DSM 17132] Length = 358 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 160/355 (45%), Positives = 234/355 (65%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +Q+ + RF E+ +++ V + K+++EY + I+ + + Y Sbjct: 1 MLIEQLEGIVERFDEVSQQITMPEVVSDMEKFKKISKEYRDLEKIVQEYNAYKLILAHLD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D E+R++A++E+ + + E E + LL+PKD +D K ILEIRAGT Sbjct: 61 EAKEILA-TEKDEEMREMAKLELDELSPKKEEAEERLKELLIPKDPNDSKDSILEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA++F GDLFRMY+R+AA + W+ V+ +D GGYKEIV ++ G V+ ++K+ES Sbjct: 120 GGDEASIFAGDLFRMYQRFAAQQGWQFTVMDFTDAPSGGYKEIVVSVKGEDVYGKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GR+HTSAATVAVLPEA E+DV I + DIR DT +SG+GGQ VNTT Sbjct: 180 GVHRVQRVPATESQGRIHTSAATVAVLPEADEVDVQINMNDIRKDTFCSSGAGGQSVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+THIPTG++V E+SQ +N +A+ VLR+RLY++E + + RK +GS Sbjct: 240 YSAVRVTHIPTGLVVQCQDERSQIKNFDKALTVLRSRLYEIELAKQNESIAGERKSLVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRS++IRTYN+ QGR+TDHRI T+Y L +V++G I + I L A + + Sbjct: 300 GDRSDKIRTYNYPQGRVTDHRIGFTVYNLPHVMEGNIGEFIEKLRLAENTEKMKE 354 >gi|308050535|ref|YP_003914101.1| bacterial peptide chain release factor 1 (bRF-1) [Ferrimonas balearica DSM 9799] gi|307632725|gb|ADN77027.1| bacterial peptide chain release factor 1 (bRF-1) [Ferrimonas balearica DSM 9799] Length = 360 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 242/355 (68%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ E++ + E + D + +L++EY+ + +++ Y Q +++ Sbjct: 8 KLEGLQERYEEVQALLGEPDVIADQDRFRQLSKEYSQLEAVVNAFLAYQQNQEDIATATE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++A+ E+ + LE E+ LLLPKD +DD+S +EIRAG GG E Sbjct: 68 MLA----DPEMKEMAEEELAEARAQTEALEQELQILLLPKDPNDDRSAFVEIRAGAGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDL RMY RYA + W VE++S+SD + GGYKE++A SG V+ +KFESG HR Sbjct: 124 AAIFAGDLLRMYSRYAEQKGWSVELMSASDGEHGGYKEVIAKFSGDSVYGELKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TV V+PE E + ++I D+++DT RASG+GGQHVN TDSA Sbjct: 184 VQRVPATESQGRIHTSACTVVVMPEVPEAEAIEINPADLKVDTFRASGAGGQHVNKTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG +V E+SQH+NR +AM VL ARL E ++ E ++ R+ + SGDR Sbjct: 244 VRITHLPTGTVVECQDERSQHKNRAKAMAVLSARLQAAEDEKRKAEETSTRRSLVASGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR++DHRINLTLY+L V++G + ++ P+L HQA ++ + +E Sbjct: 304 SERIRTYNYPQGRVSDHRINLTLYRLTEVMEGELSALMQPILQEHQADLLAALAE 358 >gi|118443694|ref|YP_879014.1| peptide chain release factor 1 [Clostridium novyi NT] gi|166223551|sp|A0Q312|RF1_CLONN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118134150|gb|ABK61194.1| peptide chain release factor 1 [Clostridium novyi NT] Length = 357 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 250/356 (70%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +N++ E+ +++S+ + + + KL +E+A + I++K Y K+E + Sbjct: 1 MLDKLEFTENKYEELSIKISDPSVMANQNEWRKLCKEHAELETIVTKYREYKTNKEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D +++++ Q E+ +E+ I + + E+ LLLPKD +DDK+ +EIRAG G Sbjct: 61 NKEMLSEE-TDKDMKEMIQEEIKTLEESIVKDQEELKILLLPKDPNDDKNVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA WK E++S+++ D GG+KE+V + G +S+MKFESG Sbjct: 120 GDEAALFAANLFRMYTRYAERHGWKTELMSANETDIGGFKEVVFMLRGDCAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++D+ I DIR+D RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVDDVDIQIDPNDIRVDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V EKSQ +N+ +AMKVL+ARLY+ + SA+RK Q+G+G Sbjct: 240 SAVRMTHIPTGIVVSCQDEKSQLKNKEKAMKVLKARLYEKAEAERSASISADRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+T+HRI LTLYKLE L G ++++I+ L+TA QA+ + + Sbjct: 300 DRSERIRTYNYPQGRVTEHRIGLTLYKLEAFLDGDMEEVIDALITAEQAEKMKAMG 355 >gi|251778025|ref|ZP_04820945.1| peptide chain release factor 1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082340|gb|EES48230.1| peptide chain release factor 1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 360 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 250/357 (70%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + + KL +E A + I++ Y Q ++ Q Sbjct: 1 MLLDKLAFIENKYDELSVKISDPSIMQNQNEWRKLCKEQADLEIIVNAYKEYKQVIEDLQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D SD E++++ E+ ++ + ELE EI LLLPKD +DDK+ +EIR G Sbjct: 61 VNKEMLSDE-SDREMKEMLNEEISSLSEREIELEKEIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY RYA ++W E++S ++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGDEAALFAYNLFRMYTRYAERQRWSTEIMSLNETDIGGFKEVVFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTS TVAVLPE +++++I +D+RID RASG GGQ VNTT Sbjct: 180 GVHRVQRVPDTESSGRIHTSTVTVAVLPEVDDVEIEIADKDVRIDVFRASGHGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V EKSQ +N+ +AMKVLR+RL++ + A+ +A+RK Q+G+ Sbjct: 240 DSAVRITHLPSGLVVSCQDEKSQLKNKEKAMKVLRSRLFEKAEQERADGIAADRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGRITDHRI LTLYKL+ L G + ++IN L+TA QA+ + Sbjct: 300 GDRSERIRTYNYPQGRITDHRIGLTLYKLDSFLDGEVQEMINALITADQAEKMQKMG 356 >gi|162138527|ref|YP_483698.2| peptide chain release factor 1 [Rhodopseudomonas palustris HaA2] gi|119361590|sp|Q2J423|RF1_RHOP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 361 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 182/358 (50%), Positives = 257/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ + + Y+++T E + ++P++ + Y + + E Sbjct: 1 MSNLPEAKLDVLLAHHASLEAQLLGEVAANDYVRITRELSELNPLVEAVKAYREVRDELG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D +D E+R +A+ E A++ +L +I LLPKD D+++ +LEIRAGT Sbjct: 61 DIDDLLEDPATDPEMRAMAEAERDALDAHREDLIQQIRVALLPKDAMDERNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GG+KEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE E+DVDI +D++IDTMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKPDDLKIDTMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD E++R+ + RSA RK ++GS Sbjct: 241 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRIDSARSAERKQKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQ + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQVAQLAAQG 358 >gi|59711375|ref|YP_204151.1| peptide chain release factor 1 [Vibrio fischeri ES114] gi|197334513|ref|YP_002155529.1| peptide chain release factor 1 [Vibrio fischeri MJ11] gi|75431754|sp|Q5E6T3|RF1_VIBF1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690273|sp|B5FBX0|RF1_VIBFM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|59479476|gb|AAW85263.1| peptide chain release factor RF-1 [Vibrio fischeri ES114] gi|197316003|gb|ACH65450.1| peptide chain release factor 1 [Vibrio fischeri MJ11] Length = 362 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L+ EY+ + + Y+Q ++ Sbjct: 1 MKASIRVKLETLVERYEEVQHLLGDPDVIGDQNKFRALSREYSQLEEVTQCFQAYEQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +D+++C LEIR Sbjct: 61 DLVAAQEMAQE--DDEEMREMAQEEIKDAKEAIERLTDELQVLLLPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F G+LFRMY R+A + W+VEV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGNLFRMYSRFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGEGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E R A S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMSVLAARIIQAEEARRAAAVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I P++ +QA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLNEVMEGDLGCLIEPVVLEYQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|331085530|ref|ZP_08334614.1| peptide chain release factor 1 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407417|gb|EGG86919.1| peptide chain release factor 1 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 358 Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 256/354 (72%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ EI + E + + KL +E A ++PI+ + Y + KQ D Sbjct: 3 DKLEDLLIRYEEIMGELQEPDVANDQERFRKLMKEQADLAPIVEAYTEYKKAKQSIADSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+R+LA+ E+ + +K + ELE+E+ LLLPKD +DDK+ ++EIRAG GG Sbjct: 63 EML-EIESDEEMRELAKEELSSSKKRVEELEHELKILLLPKDPNDDKNIMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF +++RMY YA ++WK E++S ++N GG+KE+V +SG+GV+SRMK+ESGVH Sbjct: 122 ESALFAAEVYRMYVHYAESKRWKTEMISVNENGIGGFKEVVFMVSGQGVYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIEEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQSAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D++I+ L+ A QA + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSILNGDLDEVIDSLIAADQAIRLSGLE 355 >gi|322832986|ref|YP_004213013.1| peptide chain release factor 1 [Rahnella sp. Y9602] gi|321168187|gb|ADW73886.1| peptide chain release factor 1 [Rahnella sp. Y9602] Length = 360 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EY+ ++ + + Q +++ + Sbjct: 8 KLEALQERHEEVQAMLGDAGVIADQDKFRSLSREYSQLTAVSECFLAWRQAQEDLETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + I ELE ++ LLLPKD DD++ C LEIRAGTGG E Sbjct: 68 ML----DDPEMREMAQDEIKECKANIEELEEKLQVLLLPKDPDDERGCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +R+W+VE++S+S+ + GGYKE++A ISG G + + KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEMRRWRVEIVSASEGEHGGYKEVIAKISGEGAYGQFKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVAKRQAEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLT+Y+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEVMEGKLDSLIQPIVQEYQADQLAALSE 358 >gi|317048556|ref|YP_004116204.1| peptide chain release factor 1 [Pantoea sp. At-9b] gi|316950173|gb|ADU69648.1| peptide chain release factor 1 [Pantoea sp. At-9b] Length = 360 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 246/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + + L+ EYA +S + + Q ++ Sbjct: 1 MKTSIVAKLEALQERHEEVEALLGDAGVIADQERFRALSREYAQLSDVTRCFREWQQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ ++ LE ++ LLLPKD DD++ C +E+R Sbjct: 61 DVETAEMLL----DDPEMREMAQEELKTSREKREVLEQQLQVLLLPKDPDDERPCFVEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VE++SS+D + GGYKE++A ++G G + R K Sbjct: 117 AGTGGDEAAIFAGDLFRMYSRYAEARRWQVEIISSNDGEHGGYKEVIARVTGDGAYGRFK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPELPEAELPDINPGDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVLGARIHAAEMAKRHEAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRIRTYNFPQGRVTDHRINLTIYRLDETMEGKLDSLIEPIVQEYQADQLAAL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|311693603|gb|ADP96476.1| peptide chain release factor 1 [marine bacterium HP15] Length = 362 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 251/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ +S+S + D + L+ E+A I PI+ + Sbjct: 1 MKPSIQSRLEQLSDRFEEVSALLSDSSIISQQDKFRDLSREFAEIEPIVHCFQAWQHSLD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D D+++R++A+ E+ E++ EL+ E+ L+LPKD +D K+ LEIR Sbjct: 61 DIEAARELAKD--GDADMREMAEEELQLAEQKSEELDEELQRLMLPKDPNDGKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VEVLS S+ + GG+KE++A ++G GV+ +K Sbjct: 119 AGTGGDEAAIFAGDLFRMYLRYAERRRWQVEVLSESEGEHGGFKELIARVAGDGVYGALK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E + +++ D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADEAEAIELNKADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +A+ +L +RL + E +R + RK Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKALSLLASRLQNAETERQQKSMAETRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D ++ PL HQA+++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVIAGDLDAVVVPLQQEHQAELLASL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|238919470|ref|YP_002932985.1| peptide chain release factor 1 [Edwardsiella ictaluri 93-146] gi|259585221|sp|C5B814|RF1_EDWI9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238869039|gb|ACR68750.1| peptide chain release factor 1, putative [Edwardsiella ictaluri 93-146] Length = 360 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EYA ++ + + Q + + Sbjct: 8 KLEALQERHEEVQALLGDAGVIADQDRFRALSREYAQLTDVSHCFLAWRQVQDDLTTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + ELE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 LL----DDPEMRDMAQEELKEARGRLAELEQQLQILLLPKDPDDERDCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W++E++S+S+ + GGYKE++A +SG G + R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRIEIMSASEGEHGGYKEVIARVSGDGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+P E + I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPAVPEAELPQINPADLRIDTYRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEIAKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R+RTYNF QGR+TDHRINLTLY+L+ V++G +D++I P++ HQA + + +E Sbjct: 304 SDRVRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDNLIEPIVQEHQADQLSALAE 358 >gi|18311184|ref|NP_563118.1| peptide chain release factor 1 [Clostridium perfringens str. 13] gi|110799590|ref|YP_696880.1| peptide chain release factor 1 [Clostridium perfringens ATCC 13124] gi|110802815|ref|YP_699476.1| peptide chain release factor 1 [Clostridium perfringens SM101] gi|168205561|ref|ZP_02631566.1| peptide chain release factor 1 [Clostridium perfringens E str. JGS1987] gi|168210131|ref|ZP_02635756.1| peptide chain release factor 1 [Clostridium perfringens B str. ATCC 3626] gi|168213694|ref|ZP_02639319.1| peptide chain release factor 1 [Clostridium perfringens CPE str. F4969] gi|168215831|ref|ZP_02641456.1| peptide chain release factor 1 [Clostridium perfringens NCTC 8239] gi|169344167|ref|ZP_02865149.1| peptide chain release factor 1 [Clostridium perfringens C str. JGS1495] gi|182624062|ref|ZP_02951850.1| peptide chain release factor 1 [Clostridium perfringens D str. JGS1721] gi|20139327|sp|Q8XIB9|RF1_CLOPE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361525|sp|Q0TNB0|RF1_CLOP1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361526|sp|Q0SQY1|RF1_CLOPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|18145867|dbj|BAB81908.1| peptide chain release factor 1 [Clostridium perfringens str. 13] gi|110674237|gb|ABG83224.1| peptide chain release factor 1 [Clostridium perfringens ATCC 13124] gi|110683316|gb|ABG86686.1| peptide chain release factor 1 [Clostridium perfringens SM101] gi|169297625|gb|EDS79725.1| peptide chain release factor 1 [Clostridium perfringens C str. JGS1495] gi|170662868|gb|EDT15551.1| peptide chain release factor 1 [Clostridium perfringens E str. JGS1987] gi|170711762|gb|EDT23944.1| peptide chain release factor 1 [Clostridium perfringens B str. ATCC 3626] gi|170714864|gb|EDT27046.1| peptide chain release factor 1 [Clostridium perfringens CPE str. F4969] gi|177910955|gb|EDT73309.1| peptide chain release factor 1 [Clostridium perfringens D str. JGS1721] gi|182382220|gb|EDT79699.1| peptide chain release factor 1 [Clostridium perfringens NCTC 8239] Length = 360 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 170/357 (47%), Positives = 254/357 (71%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ E+ +++S+ + + KL +E+A + I++K Y + +E + Sbjct: 1 MILDRLNFIENKYDELSVKISDPSIMANQKEWRKLCKEHADLEVIVNKYKEYKEATEELE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + SD E+R++ E+ + + +ELE+EI LLLPKD +DDK+ +EIR G Sbjct: 61 ANKEMLSEE-SDQEMREMINSEIKDLTERKKELEDEIQILLLPKDPNDDKNVFVEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY +YA +WKVE++S+++ D GG+KE+V I G G +S++K+ES Sbjct: 120 GGDEAALFAANLFRMYTKYAEKNRWKVELMSANETDIGGFKEVVFMIKGAGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+SGR+HTS ATVAVLPE +++++I +DI+ID RASG+GGQ VNTT Sbjct: 180 GAHRVQRVPDTESSGRIHTSTATVAVLPEVDDVEIEINDKDIKIDVFRASGNGGQCVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V EKSQ +N+ +AMKVLRARL++ + +RK Q+G+ Sbjct: 240 DSAVRITHLPSGLVVSCQDEKSQLKNKEKAMKVLRARLFEQAEAERLAGIAEDRKSQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRIN+TLYKL+ L+G ID+I+N L+T QA+ + + Sbjct: 300 GDRSERIRTYNYPQGRVTDHRINMTLYKLDSFLEGDIDEILNALITEDQAQKMKAMG 356 >gi|229828875|ref|ZP_04454944.1| hypothetical protein GCWU000342_00960 [Shuttleworthia satelles DSM 14600] gi|229792038|gb|EEP28152.1| hypothetical protein GCWU000342_00960 [Shuttleworthia satelles DSM 14600] Length = 357 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ EI +++E + +L +E + ++PI+ Y ++KQ +D Sbjct: 3 DKLEDLVARYEEIMRQIAEPDIASDGAKFTELMKEQSELAPIVETFRAYQKQKQSIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R LA+ E+ ELEN++ LLLPKD++DD++ I+EIR G GG Sbjct: 63 ELL-DAESDEEMRQLAKEELAEARASAEELENQLKVLLLPKDSNDDRNVIIEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R W EV+ + GG K+I + GRG +S +K+ESGVH Sbjct: 122 EAALFAAEVYRMYRHYAESRGWACEVMELEETGIGGMKKINFMVRGRGAYSTLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS TVAV+PEA E+DV I DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPATESGGRIHTSTVTVAVMPEAQEVDVVIDPADIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LY +E R E SA R QIGSGDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKNKAFALLRAKLYTMEMLRQQEEASARRLAQIGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRINLTLYKL+ +L G + ++++ L+ A QA + Sbjct: 302 SEKIRTYNFPQGRVTDHRINLTLYKLDKILNGDLQELLDALMAADQAAKLAQQE 355 >gi|251789676|ref|YP_003004397.1| peptide chain release factor 1 [Dickeya zeae Ech1591] gi|247538297|gb|ACT06918.1| peptide chain release factor 1 [Dickeya zeae Ech1591] Length = 360 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E++ + E + D + L+ EYA ++ I + Q + Sbjct: 1 MKSSIVAKLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQCWQQTQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+RDLAQ E+ A + LE ++ LLLPKD DD++ C LEIR Sbjct: 61 DLATAELML----DDPEMRDLAQEELKAAKAASETLEQQLQVLLLPKDPDDERGCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+WKVE++S+SD + GGYKE++A + G G + ++K Sbjct: 117 AGTGGDEAALFAGDLFRMYSRYAESRRWKVEIMSASDGEHGGYKEMIAKVVGDGAYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPEVPEAELPDINPADLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLAARIRAAEMQKRQQEEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRIRTYNFPQGRVTDHRINLTLYRLDEAIEGKLDMLIQPIVQEYQADQLAAL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|291543206|emb|CBL16315.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus sp. 18P13] Length = 361 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 164/351 (46%), Positives = 245/351 (69%), Gaps = 4/351 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ +F EI R+S+ + Y +L +EY + PI+ K Y + Q Q+ Sbjct: 3 EKLQIMEQKFEEISQRLSDPAVTTDIAVYTQLMKEYKNLEPIVQKYRAYKRSAQSMQEAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++AQ E ++++ E ++ LLLPKD +DD++ I+EIR G GG Sbjct: 63 ELLDAGSEDPELREMAQAEFETEKEQLAEYAEQLKILLLPKDPNDDRNVIIEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L+RMY YA R WK EVLS++ + GG+KEI +I+G G +SR+K+ESGVH Sbjct: 123 EAALFANSLYRMYTMYAESRGWKQEVLSANPTELGGFKEISFSITGEGAYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAVL EA E+++ I D++ID R+SG+GGQH+N T+SA Sbjct: 183 RVQRVPETESQGRIHTSTVTVAVLVEADEVELAINPTDLKIDVFRSSGAGGQHINKTESA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V E+SQ +N+ RAM +LR+RLY+ ++ ++ ++ R++Q+G+GDR Sbjct: 243 VRITHLPTGLVVECQDERSQFKNKDRAMMILRSRLYERMQQEQQDKIASQRRMQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 SERIRTYNF QGR+TDHRI LT+Y+LE V+ G +D++++ L TA QA + Sbjct: 303 SERIRTYNFPQGRLTDHRIGLTIYRLEDVMNGNLDEVLDALATADQAAKLA 353 >gi|120555272|ref|YP_959623.1| peptide chain release factor 1 [Marinobacter aquaeolei VT8] gi|166223568|sp|A1U367|RF1_MARAV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120325121|gb|ABM19436.1| bacterial peptide chain release factor 1 (bRF-1) [Marinobacter aquaeolei VT8] Length = 363 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 246/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L RF E+ +S++ + D + L+ E+A I P++ + Q + Sbjct: 1 MKPSIQSRLEQLVERFEEVNALLSDASVIANQDKFRDLSREFAEIEPVVKCFQAWRQSLE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D D+++R++A+ E+ + EL+ E+ L+LPKD +D K+ LEIR Sbjct: 61 DIDAATELAKD--GDADMREMAEEELASARARSEELDEELQRLMLPKDPNDTKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VEVLS ++ + GG+KEI+A +SG GV+ +K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAEKRRWQVEVLSENEGEHGGFKEIIARLSGDGVYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E + +I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADEAEAVEINKADLRVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR +A+ +L +RL + E ++ + RK Sbjct: 239 VNKTDSAIRITHLPTGIVVECQEERSQHKNRAKALSLLASRLQNAELEKQQKSMAETRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D ++ PL HQA+++ Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVIAGDLDAVVVPLQQEHQAELLADM 358 Query: 356 S 356 + Sbjct: 359 A 359 >gi|154502573|ref|ZP_02039633.1| hypothetical protein RUMGNA_00386 [Ruminococcus gnavus ATCC 29149] gi|153796765|gb|EDN79185.1| hypothetical protein RUMGNA_00386 [Ruminococcus gnavus ATCC 29149] Length = 356 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 254/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E + + KL +E + ++PI+ + Y Q KQ +D Sbjct: 3 DKLEDLLIRYEEVMGELQEPGVANDPERFRKLMKEQSDLAPIVEAYNEYKQCKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ + + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 MMLEEESD-EEMRELAKEELNESKARVEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+W+ E++S ++N GG+KE V I+G+G +SRMK+ESGVH Sbjct: 122 EAALFAAEVYRMYLHYAESRRWRTEMISLNENGIGGFKECVFMITGQGAYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA ++DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEDVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQQSAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D++I+ L+ A Q+ + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDTILNGDLDEVIDSLIAADQSAKLANMNE 356 >gi|88810851|ref|ZP_01126108.1| Peptide chain release factor 1 [Nitrococcus mobilis Nb-231] gi|88792481|gb|EAR23591.1| Peptide chain release factor 1 [Nitrococcus mobilis Nb-231] Length = 362 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 256/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M L +++ L R+ EIE +++ + + L++EYA + P++ +S Y + +Q Sbjct: 1 MKGLLRQRLEQLGERYEEIEALLADPTVIGEQKQFTALSQEYARLHPVVQALSKYQEMEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D D EIR LA+ E+ A + ++ EL ++ +L+LP+D DD+K LEIR Sbjct: 61 VLTSTRALSEDP--DPEIRALAKDEIRAAQLQLEELGQQLQWLMLPQDPDDEKGIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+W++E+++ + + GGYKEI++ + G GV+SR+K Sbjct: 119 AGTGGDEAALFAGDLFRMYARYAERRRWRLEIINEAPGEHGGYKEIISRVEGAGVYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE +I+ ++R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPTTESQGRIHTSACTVAVLPEPEQIEEIETATAELRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM +L+A+L ER+R E+SA R+ Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMGLLQAKLTARERERQQQEQSATRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF Q R+T+HR+ LTLYKL+ +L+G +D II+PL+++H+A + + Sbjct: 299 LVGSGDRSERIRTYNFPQSRVTEHRVGLTLYKLDEILEGDLDPIIDPLISSHRADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|254238595|ref|ZP_04931918.1| peptide chain release factor 1 [Pseudomonas aeruginosa C3719] gi|126170526|gb|EAZ56037.1| peptide chain release factor 1 [Pseudomonas aeruginosa C3719] Length = 360 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 240/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQTRFRAYSREYAEVEPVILAFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E+RDLA+ EV + L + + +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPELRDLAEEEVAEARGRLAALGDSLQRMLLPKDPNDSRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGT G EAA+F GDLFRMY RYA + W+VE LS ++ + GGYKE++A + G V++++K Sbjct: 119 AGTCGDEAAIFSGDLFRMYSRYAERQGWRVETLSENEGEHGGYKEVIARVEGDNVYAKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQAAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIP+GI+V E+SQH+NR +AM L A+L D ++ ++ RKL Sbjct: 239 VNKTDSAVRITHIPSGIVVECQEERSQHKNRAKAMAWLAAKLNDQQQAAAQQAIASTRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY L V++G ++ +I PLL +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYSLGEVMEGAVEQVIEPLLQEYQADQLAAL 358 Query: 356 SE 357 + Sbjct: 359 GD 360 >gi|166032746|ref|ZP_02235575.1| hypothetical protein DORFOR_02461 [Dorea formicigenerans ATCC 27755] gi|166027103|gb|EDR45860.1| hypothetical protein DORFOR_02461 [Dorea formicigenerans ATCC 27755] Length = 376 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 243/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R EI + E + + KL +E + ++PI+ Y KQ ++ Sbjct: 23 DKLEDLLIRLEEILSELQEPDVASDPNRFRKLMKEQSELTPIVEAYKEYKACKQNIEE-S 81 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD ++R+LA+ E+ + + ELE+E+ LLLPKD +DDK+ ++EIRAG GG Sbjct: 82 LELLNEESDEDMRELAKEELNESKARVEELEHELKILLLPKDPNDDKNVVVEIRAGAGGD 141 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA ++WKVE++ + GG K + I G+G +S MK+ESGVH Sbjct: 142 EAALFAAEIYRMYLHYAESKRWKVELVECEEIGIGGMKNVTFMIDGQGAYSMMKYESGVH 201 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA ++DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 202 RVQRVPETESGGRIHTSTITVAVMPEAEDVDVHIDEKDIRIDVMRASGNGGQCVNTTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + RK QIG+GDR Sbjct: 262 VRLTHYPTGIVIYSQTEKSQLQNKEKAFALLRAKLYDLECQKQHDAEAEARKSQIGTGDR 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYKL+ ++ G I +II+ + A QAK + + E Sbjct: 322 SEKIRTYNFPQGRVTDHRIGLTLYKLDKIMNGDIQEIIDACIAADQAKKLANMDE 376 >gi|298292694|ref|YP_003694633.1| peptide chain release factor 1 [Starkeya novella DSM 506] gi|296929205|gb|ADH90014.1| peptide chain release factor 1 [Starkeya novella DSM 506] Length = 365 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 181/350 (51%), Positives = 250/350 (71%), Gaps = 2/350 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L R AEIE +S +P + Y++L+ E+A +SP+ + +++ Sbjct: 1 MTALPDARLDQLLARHAEIEHALSANPDAETYVRLSREFAELSPLTDSVKALRSAERQLT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T+ + D E+ LA+ EV ++E+++ L + + LLPKD D++ ILE+RAGT Sbjct: 61 DARTLAAEAAGDKEMAALAEEEVASLEEQVETLTHAVRLALLPKDAMDERGVILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMYER+A L W VEVLS ++ GG+KEIVA + G G ++++KFES Sbjct: 121 GGDEAALFAGDLFRMYERFAGLNGWSVEVLSLTEGTAGGFKEIVAALHGSGAYAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE SGR+HTSAATVAVLPE ++D+ I D+RID RASG+GGQHVN T Sbjct: 181 GVHRVQRVPETEGSGRIHTSAATVAVLPEVEDVDIAINESDLRIDVFRASGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITH+PTG +V E+SQH+N+ RAM +LRAR+Y+ ER++ + R++ RK+Q+GS Sbjct: 241 ESAVRITHLPTGTVVAVQDERSQHKNKARAMGMLRARIYEAEREKRDSARASERKVQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQ 348 GDRSERIRTYNF QGR+TDHRI LTL+KL +L G + ++++ L T +Q Sbjct: 301 GDRSERIRTYNFPQGRVTDHRIGLTLHKLPEILSGEGLGELVDALTTEYQ 350 >gi|323492377|ref|ZP_08097530.1| peptide chain release factor 1 [Vibrio brasiliensis LMG 20546] gi|323313424|gb|EGA66535.1| peptide chain release factor 1 [Vibrio brasiliensis LMG 20546] Length = 362 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGNQDKFRALSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMANE--DDEEMREMAQEEIKEAKEAIERLSDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W+VEV+SS++++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKKGWRVEVMSSNESEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIIQAEEAKRAAEESDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDVASLIDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|51246578|ref|YP_066462.1| peptide chain release factor 1 [Desulfotalea psychrophila LSv54] gi|61214607|sp|Q6AJM5|RF1_DESPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|50877615|emb|CAG37455.1| probable peptide chain release factor 1 (RF-1) [Desulfotalea psychrophila LSv54] Length = 357 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 177/354 (50%), Positives = 244/354 (68%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + DL NR +E ++S+ V+ + K+ E+A +S + + Y Q+ +D Sbjct: 4 DKFDDLDNRIEHLEGKLSDPEIVNDQKEFQKVVREHAHLSKLNTVYKEYKTACQDVEDNK 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D ++++LA+ E+ + I EL+ I +LLPKD +D+K+ LEIRAG GG Sbjct: 64 AILHDDGEDPDLKELAKAELEELNVRIVELDKAIKIILLPKDPNDEKNTFLEIRAGAGGD 123 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DLFRMY R+A WKVEV+SS+ GG+KEI+A ISG VFS++K+ESGVH Sbjct: 124 EAALFVADLFRMYTRFAETMGWKVEVMSSNPLGIGGFKEIIALISGEQVFSKLKYESGVH 183 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTSA TVA+LPEA E+++ I + +++ D R+SG GGQ VNTTDSA Sbjct: 184 RVQRVPETETQGRIHTSAVTVAILPEAEEVELHIDMNELKFDVFRSSGPGGQSVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V EKSQH+N+++A+ VLRARL D + S R+ Q+G+GDR Sbjct: 244 VRITHLPTGLVVICQDEKSQHKNKVKALTVLRARLLDKLESEHNAKISEARRSQVGTGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHRINLTLYKLE ++ G +D++I PL+T QA+ + Sbjct: 304 SERIRTYNFPQGRVTDHRINLTLYKLETIMGGSLDEVIYPLITHDQAEKLKDLE 357 >gi|229020548|ref|ZP_04177293.1| Peptide chain release factor 1 [Bacillus cereus AH1273] gi|229026769|ref|ZP_04183101.1| Peptide chain release factor 1 [Bacillus cereus AH1272] gi|228734492|gb|EEL85154.1| Peptide chain release factor 1 [Bacillus cereus AH1272] gi|228740768|gb|EEL91021.1| Peptide chain release factor 1 [Bacillus cereus AH1273] Length = 358 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + + + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDMQETVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDAEMREMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++++I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEINIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|297180848|gb|ADI17053.1| protein chain release factor a [uncultured alpha proteobacterium HF0010_30A23] Length = 358 Score = 284 bits (725), Expect = 2e-74, Method: Composition-based stats. Identities = 188/353 (53%), Positives = 250/353 (70%), Gaps = 4/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++ + R EI+ +++ P Y KLT EYA ++PI+ ++ + + Q+ +D + Sbjct: 7 KLETVVRRHEEIQALLADHPEPGSADYTKLTREYAEMNPIVEEMRAFQKSVQDLEDARAL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D+++R +A+ E ++ EI E + LLLP+D D ++ ILEIR GTGG EA Sbjct: 67 AA-SEDDADMRAMAEDEARELQAEIDATEQRMKVLLLPRDEADSRNAILEIRPGTGGDEA 125 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF GDL MY RYA L+ WK E+L S+ND GG KE+ A I+G VF+ +KFESGVHRV Sbjct: 126 GLFAGDLLAMYRRYAELQGWKFEILEMSENDVGGLKEVSAKINGTNVFAALKFESGVHRV 185 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE+ GR+HTSAATVAVLPEA ++D++I EDIRIDTMRASG+GGQHVNTTDSAVR Sbjct: 186 QRVPMTESGGRIHTSAATVAVLPEAEDVDIEIKAEDIRIDTMRASGAGGQHVNTTDSAVR 245 Query: 246 ITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 ITH+PTGI+VT S+KSQH+NR AM+VLRARLY+ R+ ER+ANRK Q+GSGDRSER Sbjct: 246 ITHLPTGIIVTQSQKSQHRNREEAMRVLRARLYEKAREEANAERAANRKGQVGSGDRSER 305 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 IRTYN+ QGR++DHRINLTL+KL+ ++ G + ++I L QA + E Sbjct: 306 IRTYNYPQGRVSDHRINLTLHKLDRIVAGDGLGEVIEALTAEDQAARLAELGE 358 >gi|329888688|ref|ZP_08267286.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568] gi|328847244|gb|EGF96806.1| peptide chain release factor 1 [Brevundimonas diminuta ATCC 11568] Length = 345 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 185/345 (53%), Positives = 247/345 (71%), Gaps = 4/345 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + +RF ++E RM + ++L++E+A + P+ + + + E DL + Sbjct: 1 MLDRFHQVEARMGAATDGAEIVRLSKEHAELKPVADAVQALARARAEADDLKAMAA---- 56 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D E+ LA E+ A+ + + LE E+ LL P+D D++ S +LE+RAGTGG EAALF GD Sbjct: 57 DPEMAALASDELDALTERLPTLEREVALLLAPRDADENASAVLEVRAGTGGDEAALFAGD 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY RYA R W+VE+ S+++ D GG+KEI+AT+SG GVF R+KFESGVHRVQRVP T Sbjct: 117 LFRMYSRYAQSRGWRVEIDSAAEGDAGGFKEIIATVSGEGVFGRLKFESGVHRVQRVPTT 176 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 EA GR+HTSAAT+AVLPE +++++I +DIRIDT R+SG+GGQHVN TDSAVRITH+PT Sbjct: 177 EAGGRIHTSAATIAVLPEVEDVEIEILDKDIRIDTYRSSGAGGQHVNKTDSAVRITHLPT 236 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+ TSSEKSQH NR +AMK LR RLYD++R+ RS RK Q+GSGDRSERIRTYNF Sbjct: 237 GIVATSSEKSQHVNRDKAMKNLRVRLYDMQRQAKDAARSDARKSQVGSGDRSERIRTYNF 296 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 QGR+TDHRI LTL+ L +L+G +D ++N L+ QA + Sbjct: 297 PQGRVTDHRIGLTLHSLPQILEGDLDPMLNALIAEDQAARLADLE 341 >gi|78221601|ref|YP_383348.1| peptide chain release factor 1 [Geobacter metallireducens GS-15] gi|119361544|sp|Q39YQ1|RF1_GEOMG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78192856|gb|ABB30623.1| bacterial peptide chain release factor 1 (bRF-1) [Geobacter metallireducens GS-15] Length = 355 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 255/355 (71%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I +L+ R+ E+E ++ + + KL+ E+ ++ ++ Y + E + Sbjct: 3 DKIEELEIRYQELESLLAVPTVIANQPEFRKLSREHNDLTGLVEAYRRYKKVLAEIEGNR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ +E++ ELE EI LLLPKD +DD++ ILEIRAGTGG Sbjct: 63 ELLA----DPEMKEMAEAELEDLERQQEELEGEIKLLLLPKDPNDDRNVILEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY R+A +WKVEV+S+S+++ GG+KE+VA I G+ VF+++K+ESG H Sbjct: 119 ESALFAGDLFRMYSRFAERNRWKVEVMSASESERGGFKEVVALIEGQAVFAKLKYESGTH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVAVLPEA +I++DI D++ID RASG+GGQHVN T+SA Sbjct: 179 RVQRVPETEAQGRIHTSACTVAVLPEAEDIEIDINPVDLKIDVYRASGAGGQHVNKTESA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NR +AMKVL++R+ D ++ +A+RK Q+GSGDR Sbjct: 239 VRITHLPTGIVVECQDERSQIKNRSKAMKVLKSRILDGLQQEQNARIAADRKQQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ +++G I ++++ L +Q + + + +E Sbjct: 299 SERIRTYNFPQGRMTDHRIGLTLYRLDALMEGDIAEVVDSLRAHYQMEALKAQAE 353 >gi|311070220|ref|YP_003975143.1| peptide chain release factor 1 [Bacillus atrophaeus 1942] gi|310870737|gb|ADP34212.1| peptide chain release factor 1 [Bacillus atrophaeus 1942] Length = 356 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 160/357 (44%), Positives = 238/357 (66%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ + +S+ V+ KL ++E + IS + Y ++ D Sbjct: 1 MLDRLKSIEERYERLNELLSDPEVVNDPNKLREYSKEQSDISETVEVYRRYRDASEQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E+R++ + E+ ++ E + +++ LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAMLEDK-LDAEMREMVKEEISELQDETEAMTDQLKLLLVPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA L+ WK E++ +S GGYKEI+ I+G+G +S++K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAELQGWKTEIMEASVTGTGGYKEIIIMINGKGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFTSSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+G Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDQTRKSAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+ ++ L+ Q+ + A E Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEFVDALIMEDQSSKLQKAEE 356 >gi|328555408|gb|AEB25900.1| peptide chain release factor 1 [Bacillus amyloliquefaciens TA208] gi|328913779|gb|AEB65375.1| peptide chain release factor 1 [Bacillus amyloliquefaciens LL3] Length = 356 Score = 283 bits (724), Expect = 2e-74, Method: Composition-based stats. Identities = 160/356 (44%), Positives = 237/356 (66%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y ++ D Sbjct: 1 MLDRLQSIEQRYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVEVYRQYRDASEQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+++R++ + E+ +++E L + LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAMLEDK-LDADMREMVKEEISELQRETETLSERLKVLLIPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA ++ WK EV+ +S GGYKEI+ I+G+G +S++K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAEVQGWKTEVMEASVTGTGGYKEIIFMITGKGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E NRK +GSG Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDQNRKSAVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+++ L+ Q+ + A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEALIVEDQSSKLQQAE 355 >gi|152997601|ref|YP_001342436.1| peptide chain release factor 1 [Marinomonas sp. MWYL1] gi|189039978|sp|A6W1C2|RF1_MARMS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|150838525|gb|ABR72501.1| peptide chain release factor 1 [Marinomonas sp. MWYL1] Length = 362 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 172/361 (47%), Positives = 247/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R+ E+ + + + + ++EYA + P++ + + Q + Sbjct: 1 MKESIKLKLESLSDRYDELAALLGVAEVIMDQDLFRAYSKEYAELEPVVKCFNEFQQIDE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D +I+++ E A + EL+ + LLLPKD +D ++ LE+R Sbjct: 61 NIAEAELMMTDA--DPDIKEMGVEEYKAGLAQKEELQLVLQKLLLPKDPNDSRNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLFRMY RYA ++WKVE++S+SD + GGYKE++A I G G +S++K Sbjct: 119 AGTGGDEASIFSGDLFRMYSRYAETQRWKVEIVSASDGEHGGYKEVIARIVGEGAYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E D+ I D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEMDEVDDIIINKSDLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIPTG++V E+SQH+NR +AM +L +RL E ++ A+E+S RK Sbjct: 239 VNKTDSAIRLTHIPTGVVVECQEERSQHKNRAKAMSLLASRLQAAELEKAASEQSETRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ ++ G +D +INPL+ QA+ + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEIVAGELDSLINPLVNEFQAEQLAAL 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|229176005|ref|ZP_04303501.1| Peptide chain release factor 1 [Bacillus cereus MM3] gi|228607498|gb|EEK64824.1| Peptide chain release factor 1 [Bacillus cereus MM3] Length = 358 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + + + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDMQETVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++RD+ + EV +E + +EL + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMRDMVKEEVSELEGQDKELSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++ I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEISIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|303256163|ref|ZP_07342179.1| peptide chain release factor 1 [Burkholderiales bacterium 1_1_47] gi|331001217|ref|ZP_08324843.1| peptide chain release factor 1 [Parasutterella excrementihominis YIT 11859] gi|302860892|gb|EFL83967.1| peptide chain release factor 1 [Burkholderiales bacterium 1_1_47] gi|329568944|gb|EGG50740.1| peptide chain release factor 1 [Parasutterella excrementihominis YIT 11859] Length = 360 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 183/362 (50%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R EI+ + + +D + L++E A I P++ K Y+Q ++ Sbjct: 1 MKDTMRSKLTQLVRRLEEIDQNLQDPDVTSNMDQFRALSKERAEIEPVVLKAKEYEQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD E+++ A E+ A +K I ++ +E+ LLLPKD +D+K+ LEIR Sbjct: 61 DLAAAEEML----SDEEMKEFASEEIKATKKAIEQISSELEILLLPKDPNDEKNIYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDLFRMY RYA +KW+VE +S+S +D GGYKEIV I G+G +S++K Sbjct: 117 AGTGGDESALFAGDLFRMYSRYAERQKWQVEFVSASPSDLGGYKEIVVKIVGQGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPEA EI DV I ++RID RASG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRVHTSACTVAVLPEADEIGDVVIDPSELRIDVYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 + T+SAVRITH+PTGI+V E+SQH+N+ RAM VL +R++ + + + S+ RK Sbjct: 237 IQKTESAVRITHLPTGIVVECQDERSQHKNKERAMGVLISRIHAAQVAEVQAKESSMRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ ++ G +D +I+PL T HQA+++ + Sbjct: 297 LIGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDSIMDGDLDCLISPLTTEHQAELLAAL 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|310659436|ref|YP_003937157.1| peptide chain release factor rf-1 [Clostridium sticklandii DSM 519] gi|308826214|emb|CBH22252.1| peptide chain release factor RF-1 [Clostridium sticklandii] Length = 356 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 253/355 (71%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I ++ ++ E+ ++S+ ++ + KL +E+A I P++ K Y K + + Sbjct: 3 DKIEFVEEKYKELNQKISDPEVINNQSLWQKLMKEHAEIEPVVMKYREYKTVKSQFEGAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + ++D E+R+LA++E+ +E+ + + E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 EIL-ESSNDEEMRELAKMELSELEESLEAVSEELRVLLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFRMY YA+ ++WKVE++SS+D GGYKE+V I G+G +SR+KFESGVH Sbjct: 122 EAALFAGVLFRMYSMYASSKRWKVELMSSNDTGVGGYKEVVFMIIGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE++GR+HTS ATVAVLPE E+ D+R+D R+SG+GGQ VNTTDS Sbjct: 182 RVQRVPETESAGRIHTSTATVAVLPEVEEVGEVELNLNDVRVDVFRSSGNGGQSVNTTDS 241 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTGI+++ EKSQ +N+ +A K+LRA+LYD+E ++ E + RK Q+G+GD Sbjct: 242 AVRLTHVPTGIVISMQDEKSQLKNKEKAFKILRAKLYDIELEKAQKEVARERKSQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYN+ QGRITDHRI +TLYKL+ L G +D++++ L+T Q + + A Sbjct: 302 RSERIRTYNYPQGRITDHRIGVTLYKLDAFLNGDLDEMVDALITTDQTEKMQMAE 356 >gi|258542227|ref|YP_003187660.1| peptide chain release factor 1 [Acetobacter pasteurianus IFO 3283-01] gi|256633305|dbj|BAH99280.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-01] gi|256636364|dbj|BAI02333.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-03] gi|256639417|dbj|BAI05379.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-07] gi|256642473|dbj|BAI08428.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-22] gi|256645528|dbj|BAI11476.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-26] gi|256648581|dbj|BAI14522.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-32] gi|256651634|dbj|BAI17568.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654625|dbj|BAI20552.1| translation peptide chain release factor 1 (RF-1) [Acetobacter pasteurianus IFO 3283-12] Length = 352 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + +R E+E +++ + +A+ + + EYA I P++++I+ + + Q Sbjct: 1 MKFDERLDQIVSRALELEAQLASGLNGEAFTQASREYAEIEPVVARINALREVEDGIQQA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+++LA+ E+ + +++ +L+ ++ LLPKD D +S ILE+R GG Sbjct: 61 EQLLA----DPEMKELAEAELAELREQLPQLQKDVRLSLLPKDVADARSAILEVRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA LF +LF MY RYA L W+ V+ +++ GG +E +A I+G+GVF+R+K+ESGV Sbjct: 117 DEAGLFAAELFDMYRRYADLNGWRFTVMDYDESELGGLREGIAEINGKGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTS TVAVLPEA E+DV++ D+R+D RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATESQGRIHTSTVTVAVLPEAEEVDVEVNETDLRVDVFRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+P+GI+V+ EKSQH+NR +AMK+LRARLY+ ER + R+A+R+ Q+G+GD Sbjct: 237 AVRLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYERERAQAHANRAADRRSQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYK++ V+ G +D+ ++ L QA ++ + Sbjct: 297 RSERIRTYNFPQGRVTDHRINLTLYKIDRVMLGELDEFVDALTQEEQAALLAAEG 351 >gi|329296264|ref|ZP_08253600.1| peptide chain release factor 1 [Plautia stali symbiont] Length = 360 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 247/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + D + L+ EYA +S + + Q ++ Sbjct: 1 MKSSIVAKLEALQERHEEVEALLGDAGVIGDQDRFRALSREYAQLSDVTRCFREWQQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+RD+AQ E+ + LE ++ LLLPKD DD++ C +E+R Sbjct: 61 DVETAEMLL----DDAEMRDMAQEELKLSRDKREVLEQQLQVLLLPKDPDDERPCFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VE++S++D + GGYKE++A I+G G + RMK Sbjct: 117 AGTGGDEAAIFAGDLFRMYSRYAEARRWQVEIMSANDGEHGGYKEVIARITGDGAYGRMK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P+ E + DI D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPKLPEAELPDINPGDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVLGARIHAAEMAKRQAAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGD S+RIRTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDSSDRIRTYNFPQGRVTDHRINLTLYRLDETMEGKLDTLIEPIVQEYQADQLAAL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|319779045|ref|YP_004129958.1| Peptide chain release factor 1 [Taylorella equigenitalis MCE9] gi|317109069|gb|ADU91815.1| Peptide chain release factor 1 [Taylorella equigenitalis MCE9] Length = 355 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 167/357 (46%), Positives = 249/357 (69%), Gaps = 9/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L R E++ ++E +D + KL+ E + I P++ ++ + + Sbjct: 1 MRSRLEQLSQRLIEVDALLAEPDVADDMDRFRKLSRERSEIDPVVELFKEFEAAEGDLNT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ SD +++++ + E+ + ++ I +LE ++ LLPKD DD +S LEIRAGTG Sbjct: 61 AVEMM----SDPDLKEMGEEEMKSTKERIEQLEQKLQLELLPKDPDDGRSVFLEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+A+F GDLFRMY RYA + WKVE++S + ++ GGY+E++A I G GV+ ++K+ESG Sbjct: 117 GDESAIFTGDLFRMYSRYAEQKGWKVELMSENPSELGGYREVIARIEGDGVYGQLKYESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVP TE+ GRVHTSA TVAVLPEA E +V + D+RIDT RASG+GGQH+N T Sbjct: 177 AHRVQRVPETESQGRVHTSACTVAVLPEADELAEVVLNPADLRIDTFRASGAGGQHINKT 236 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+ ++SQH+N+ RAM VL AR+ D++R+ ++ +A RK +GS Sbjct: 237 DSAVRITHLPTGIVAECQDDRSQHKNKARAMSVLAARINDIKRQEQQSKEAAERKSLVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G +D++ N L++ QA+++ + Sbjct: 297 GDRSERIRTYNYPQGRVTDHRINLTLYKLQQIMEGSLDELTNALISERQAELLAALG 353 >gi|228994048|ref|ZP_04153949.1| Peptide chain release factor 1 [Bacillus pseudomycoides DSM 12442] gi|229000115|ref|ZP_04159685.1| Peptide chain release factor 1 [Bacillus mycoides Rock3-17] gi|229007635|ref|ZP_04165229.1| Peptide chain release factor 1 [Bacillus mycoides Rock1-4] gi|228753646|gb|EEM03090.1| Peptide chain release factor 1 [Bacillus mycoides Rock1-4] gi|228759652|gb|EEM08628.1| Peptide chain release factor 1 [Bacillus mycoides Rock3-17] gi|228765696|gb|EEM14349.1| Peptide chain release factor 1 [Bacillus pseudomycoides DSM 12442] Length = 358 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ +S+ + KL ++E + + + Y + + +D Sbjct: 6 DRLQAVENRYEKLNELLSDPEVISDSNKLREYSKEQSDMQETVEVYREYKDVRAQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+++R++ + EV +E + +EL + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AML-EEKLDADMREMVKEEVSELEGQEKELSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|303326242|ref|ZP_07356685.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3] gi|302864158|gb|EFL87089.1| peptide chain release factor 1 [Desulfovibrio sp. 3_1_syn3] Length = 356 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 182/354 (51%), Positives = 248/354 (70%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+E +++ + Y KLT+ +A + I+ + +QE + Sbjct: 4 KLEGLEKKYMELEEALAQPDVFNDQEHYRKLTKAHADLREIVDLFRRHRALQQEMAENKQ 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D +IRD+A E+ E E+ +E + LLP D D+K+ ILEIRAGTGG E Sbjct: 64 LLHDE--DPDIRDMAHEEIRRAESELPRIEQALKVALLPTDPLDEKNTILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA L+ WKVE++S S ++ GGYKEI+ I+G V+SR+KFE+G HR Sbjct: 122 AALFAADLFRMYTRYAELQGWKVEIMSESPSESGGYKEIICLIAGDRVYSRLKFEAGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAV+PEA E+DV+I ED+RID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT +V E+SQH+N+ RAMKVL +R+ ER+R +E SA+RK Q+GSGDRS Sbjct: 242 RITHLPTNTVVTCQDERSQHKNKARAMKVLASRILAAERERQNSELSADRKAQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR TDHRINLTLY L+ +++G + + + L TA Q + + + +E Sbjct: 302 ERIRTYNFPQGRCTDHRINLTLYSLDRIMEGELTPLFDALSTAAQTEALKAQAE 355 >gi|15896138|ref|NP_349487.1| peptide chain release factor 1 [Clostridium acetobutylicum ATCC 824] gi|20139340|sp|Q97F68|RF1_CLOAB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|15025931|gb|AAK80827.1|AE007785_12 Protein chain release factor A [Clostridium acetobutylicum ATCC 824] gi|325510292|gb|ADZ21928.1| peptide chain release factor 1 [Clostridium acetobutylicum EA 2018] Length = 359 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 177/356 (49%), Positives = 248/356 (69%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++++ E+ +++S+ + + KL +E++ + I+ K Y + K++ + Sbjct: 1 MLERLEFIESKYDELSVKISDPSVMANQSEWQKLCKEHSEVENIVLKYREYKKAKEDLEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+E++++ + E+ +EK + + E E+ +LLPKD +D K+ +EIR GTG Sbjct: 61 DKEMLRDK-IDAELKEMVEEEIKELEKSVVDYEEELRVMLLPKDPNDSKNVFVEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY RYA + W EV+S+++ D GG+KEIV + G G +SRMK+ESG Sbjct: 120 GEEAALFAADLFRMYTRYAERQGWHTEVMSANETDIGGFKEIVFMVKGNGAYSRMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+SGR+HTSAATVAVLPE ++D++I DIRID RASG GGQ VNTTD Sbjct: 180 THRVQRVPNTESSGRIHTSAATVAVLPEVDDVDIEINPNDIRIDVFRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V EK Q +N+ +AMKVLRARLY+ + NR+ Q+GSG Sbjct: 240 SAVRITHLPTGIVVSCQDEKRQLKNKEKAMKVLRARLYEKAEAERNAGIAENRRNQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGRITDHRI LT+YKLE L G ID++IN L+TA QA+ + Sbjct: 300 DRSERIRTYNFPQGRITDHRIGLTIYKLEQFLDGDIDEVINGLITAEQAEKMKEMG 355 >gi|77920283|ref|YP_358098.1| peptide chain release factor 1 [Pelobacter carbinolicus DSM 2380] gi|119361572|sp|Q3A129|RF1_PELCD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|77546366|gb|ABA89928.1| bacterial peptide chain release factor 1 (bRF-1) [Pelobacter carbinolicus DSM 2380] Length = 356 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 180/353 (50%), Positives = 256/353 (72%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++++RF E+E +S+ V +++LT E+A +S +++ Y + ++ + Sbjct: 5 KLEEVEDRFREVEGLLSDPQVVSQQKRFLELTREHAELSSVVAVYREYKRVSEDIEGNRE 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D SD E+R++A+ E+ +E EL ++ LLLPKD +DDK+ ILEIRAGTGG E Sbjct: 65 LLQD--SDPEMREMAKAELPELEAHREELAQQLKVLLLPKDPNDDKNVILEIRAGTGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY R+A + WKVE +S SD++ GG+KEI+A ISG V+S++K+ESG HR Sbjct: 123 AALFAGDLFRMYSRFAEGQGWKVETMSVSDSEAGGFKEIIAMISGNRVYSQLKYESGTHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GR+HTSA TVAVLPEA ++DVDI D+RID RASG+GGQHVN T+SAV Sbjct: 183 VQRVPETEAQGRIHTSACTVAVLPEAEDVDVDIDPTDLRIDVYRASGAGGQHVNKTESAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG++V EKSQH+N+ +AMKVL++R+ D + +A+RK Q+GSGDRS Sbjct: 243 RITHVPTGVVVSCQDEKSQHKNKAKAMKVLKSRILDQVMADQQAQMAADRKSQVGSGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RIRTYNF QGR TDHRI LTLY+LE ++QG + +++ PL +Q++ + + Sbjct: 303 QRIRTYNFPQGRCTDHRIGLTLYRLEGIMQGNLSELVEPLTLHYQSEAMAAQE 355 >gi|89094907|ref|ZP_01167839.1| peptide chain release factor 1 [Oceanospirillum sp. MED92] gi|89080864|gb|EAR60104.1| peptide chain release factor 1 [Oceanospirillum sp. MED92] Length = 362 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 251/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R+ E+ +S+ + + + + EY+ + P++ Y Q ++ Sbjct: 1 MKESILSKLEKLSDRYEELAALLSDPEVISDQEKFREYSMEYSELEPVVKAFEAYTQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ ++ D SD ++R++A+ E ++ I LE E+ LLLPKD +D ++ LE+R Sbjct: 61 DLEEAEMMMAD--SDPDMREMAKEEYPEVKARIESLEGELQILLLPKDPNDSRNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA ++ W+VEV+S+++ + GGYKEI++ I G V+S++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAEVQGWRVEVVSANEGEHGGYKEIISRIVGTNVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++ +++I D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAIMAEMDESAEIEINKADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V E+SQH+NR +AM +L +RL E +R A E ++ RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQEERSQHKNRAKAMSLLASRLQAAEEERQAAELASTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V+ G + ++ PL+ +QA+ +G+ Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLQEVISGELQHVVEPLMNEYQAEQLGAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|229033962|ref|ZP_04188916.1| Peptide chain release factor 1 [Bacillus cereus AH1271] gi|228728388|gb|EEL79410.1| Peptide chain release factor 1 [Bacillus cereus AH1271] Length = 358 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + + + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDMQETVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++R++ + EV +E + +EL + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMREMVKEEVSELEGQDKELSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++ I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEISIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|312879994|ref|ZP_07739794.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas paucivorans DSM 12260] gi|310783285|gb|EFQ23683.1| bacterial peptide chain release factor 1 (bRF-1) [Aminomonas paucivorans DSM 12260] Length = 357 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 169/353 (47%), Positives = 245/353 (69%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++++ F+EIE RM + + L + ++ +SPI++ + Y + QD Sbjct: 6 KLEEIESTFSEIESRMVDPALSSNLQEMHALGKRHSELSPIVAALREYRGVLRRIQDARE 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D +R+LA+ E+ +E+++ LE I LLLP+D +D K ++EIRAG GG E Sbjct: 66 LLSQE--DEGLRELAKEELSTLEEQVEPLEQRIKVLLLPQDPNDAKDVVIEIRAGAGGEE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY R+A W E+LS++D GGYKE+V + G GV+S++K+ESGVHR Sbjct: 124 AALFAADLFRMYNRFAEREGWGSELLSTNDTGIGGYKEVVFHLKGTGVYSKLKYESGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TEA GR+HTS ATVAVLPEA E+DV + ED++IDT RASG+GGQ+VN TDSAV Sbjct: 184 VQRIPVTEAGGRIHTSTATVAVLPEAEEVDVQVRTEDLKIDTYRASGAGGQYVNMTDSAV 243 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG++V E+SQ +NR++AM++LR RLYD+E ++ +A RK Q+G+GDRS Sbjct: 244 RITHVPTGLVVTCQDERSQLKNRVKAMQLLRTRLYDLELQKQQAVMAAERKGQVGTGDRS 303 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTY++ Q R+TDHRI TLYKL+ VL G + +++ L A Q + + + + Sbjct: 304 ERIRTYSYPQNRLTDHRIGFTLYKLDQVLDGDLYELVEALTVAEQTEKLKTLA 356 >gi|212703639|ref|ZP_03311767.1| hypothetical protein DESPIG_01684 [Desulfovibrio piger ATCC 29098] gi|212672934|gb|EEB33417.1| hypothetical protein DESPIG_01684 [Desulfovibrio piger ATCC 29098] Length = 356 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 189/354 (53%), Positives = 255/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+E +++ + Y KLT+ +A + ++ + QE ++ Sbjct: 4 KLEGLEKKYMELEQALAQPDVYNDQDQYRKLTKAHADLRDVVELFRRHRSLTQELEENKQ 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D SD +I+ +AQ E+ A E E+ ELE++I LLLPKD D+K+ ILEIRAGTGG E Sbjct: 64 LLHD--SDPDIKAMAQEEIAAAEAELPELEHKIKVLLLPKDPLDEKNTILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA ++ WKVE++S S +D GGYKEI+ ISG V+S +KFE+G HR Sbjct: 122 AALFAADLFRMYTRYAEIKGWKVEIMSESPSDSGGYKEIICLISGDRVYSHLKFEAGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAV+PEA E+DV+I ED+RID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATETQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG +V E+SQH+N+ RAMKVL +R+ ER+R +E SA+RK Q+GSGDRS Sbjct: 242 RITHIPTGTVVTCQDERSQHKNKARAMKVLASRILAAERERQNSELSADRKAQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR TDHRINLTLY L+ +++G ++ + L TA Q + + + +E Sbjct: 302 ERIRTYNFPQGRCTDHRINLTLYSLDRIMEGEVEPLFEALATAAQTEALKAEAE 355 >gi|229076544|ref|ZP_04209504.1| Peptide chain release factor 1 [Bacillus cereus Rock4-18] gi|229099762|ref|ZP_04230687.1| Peptide chain release factor 1 [Bacillus cereus Rock3-29] gi|229105922|ref|ZP_04236546.1| Peptide chain release factor 1 [Bacillus cereus Rock3-28] gi|229118825|ref|ZP_04248174.1| Peptide chain release factor 1 [Bacillus cereus Rock1-3] gi|228664626|gb|EEL20119.1| Peptide chain release factor 1 [Bacillus cereus Rock1-3] gi|228677496|gb|EEL31749.1| Peptide chain release factor 1 [Bacillus cereus Rock3-28] gi|228683651|gb|EEL37604.1| Peptide chain release factor 1 [Bacillus cereus Rock3-29] gi|228706577|gb|EEL58790.1| Peptide chain release factor 1 [Bacillus cereus Rock4-18] Length = 358 Score = 283 bits (723), Expect = 3e-74, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ + KL ++E + + + Y +++ +D Sbjct: 6 DRLQAVEDRYEKLNELLSDPEVISDTNKLREYSKEQSDMQETVEVYREYKDVREQLRDAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++R++ + EV +E + + L + LL+PKD +DDK+ I+E+R GG Sbjct: 66 AMLEDK-LDADMREMVKEEVSELEGQEKTLSERLKILLVPKDPNDDKNVIVEVRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA ++ WK E++ +S + GGYKEI+ I+G+G F+++KFE+G H Sbjct: 125 EAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGYKEIIFMINGKGAFAKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E+++ I +D+R+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVAVLPEAEEVEITIHEKDVRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD R+ E NRK +G+GDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFRQEAQAEYDQNRKQAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD IN L+ QA+ + +A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDFINALVMEDQAQKMEAAE 358 >gi|254509155|ref|ZP_05121254.1| peptide chain release factor 1 [Vibrio parahaemolyticus 16] gi|219547906|gb|EED24932.1| peptide chain release factor 1 [Vibrio parahaemolyticus 16] Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDIIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAKE--DDEEMREMAQEEIKEAKETIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W+VEV+SS++++ GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKQGWRVEVMSSNESEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIIQAEEAKRAAEESDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +++P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLASLVDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|114567903|ref|YP_755057.1| peptide chain release factor 1 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|119361631|sp|Q0AUB8|RF1_SYNWW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114338838|gb|ABI69686.1| bacterial peptide chain release factor 1 (bRF-1) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 355 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 171/354 (48%), Positives = 245/354 (69%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ ++ E+ +S+ + + KL + ++A+S I++ Y ++ +D Sbjct: 1 MLEKLDSLEEKYDELTHLLSQPEVLSDQARFQKLAKAHSALSDIVTMYREYKSLSRQLED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + E R + E+ ++++ LE E+ LLLP+D +D+KS I+EIRAGTG Sbjct: 61 SKEMLVEEED-EEFRQMLADEIPQLQEKKASLEQELRILLLPQDPNDEKSVIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA + WK+E++ + D GG KEIV + GRG +S++KFESG Sbjct: 120 GEEAALFAGDLFRMYSRYAEEQGWKIEIMDTHYTDIGGIKEIVFVVDGRGAYSKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTSAATVAVLPEA E++V I D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRIPVTESGGRIHTSAATVAVLPEAEEVEVAIDPNDLRIDVYCSSGPGGQSVNTTQ 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG +V EKSQH+N+ +A++VLRARL ++ + E + RK Q+GSG Sbjct: 240 SAVRITHVPTGEVVTCQDEKSQHKNKAKALRVLRARLKELLEEEKNAEMAGTRKNQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR++DHRINLTL++LE VL+G +++IIN L+ +QA+ + Sbjct: 300 DRSERIRTYNFPQGRVSDHRINLTLHRLESVLEGRLEEIINALIAHYQAERLKQ 353 >gi|154687816|ref|YP_001422977.1| peptide chain release factor 1 [Bacillus amyloliquefaciens FZB42] gi|154353667|gb|ABS75746.1| PrfA [Bacillus amyloliquefaciens FZB42] Length = 359 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 235/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y ++ D Sbjct: 6 DRLQSIEQRYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVEVYRQYRDASEQLADAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+++R++ + E+ ++ E L + LL+PKD +DDK+ I+EIR GG Sbjct: 66 AML-EEKLDADMREMVKEEISELQGETETLSERLKVLLIPKDPNDDKNVIMEIRGAAGGE 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G+L+RMY RYA ++ WK EV+ ++ GGYKEI+ I+G+G +S++K+E+G H Sbjct: 125 EAALFAGNLYRMYSRYAEIQGWKTEVMEANVTGTGGYKEIIFMITGKGAYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTMSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E RK +GSGDR Sbjct: 245 VRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGSGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+++ L+ Q+ + A Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEALIVEDQSSKLQQAE 358 >gi|308175429|ref|YP_003922134.1| peptide chain release factor 1 [Bacillus amyloliquefaciens DSM 7] gi|307608293|emb|CBI44664.1| peptide chain release factor 1 [Bacillus amyloliquefaciens DSM 7] Length = 356 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 160/356 (44%), Positives = 237/356 (66%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ ++ +S+ V+ KL ++E + I + Y ++ D Sbjct: 1 MLDRLQSIEQRYEKLNELLSDPEVVNDPKKLREYSKEQSDIQETVEVYRQYRDASEQLTD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D+++R++ + E+ +++E L + LL+PKD +DDK+ I+EIR G Sbjct: 61 AKAMLEDK-LDADMREMVKEEISELQRETETLSERLKVLLIPKDPNDDKNVIMEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+L+RMY RYA ++ WK EV+ +S GGYKEI+ I+G+G +S++K+E+G Sbjct: 120 GEEAALFAGNLYRMYSRYAEVQGWKTEVMEASVTGTGGYKEIIFMITGKGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ E NRK +GSG Sbjct: 240 SAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDQNRKSAVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+++ L+ Q+ + A Sbjct: 300 DRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEVVEALIVEDQSSKLQQAE 355 >gi|71065612|ref|YP_264339.1| peptide chain release factor 1 [Psychrobacter arcticus 273-4] gi|119361583|sp|Q4FSV3|RF1_PSYA2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71038597|gb|AAZ18905.1| bacterial peptide chain release factor 1 (bRF-1) [Psychrobacter arcticus 273-4] Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 166/361 (45%), Positives = 245/361 (67%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +R+ E+ +S+ ++ + +L+ E++ + I + Y + Sbjct: 1 MKESLRLRLDQMVDRYEEVTALLSDPSVINDNNKFRELSVEHSDLMDITTLWQNYVGAET 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D ++ + SD +++++ Q E+ + I E+E +N ++LPKD +D LEIR Sbjct: 61 DQADAEAMLKEA-SDPDMKEMMQEEIDSARDTIVEMEEALNVMMLPKDPNDKVPAFLEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY++YA + W +EVLS+++ + GGYKEI+ +SG V+ R+K Sbjct: 120 AGTGGDEAAIFSGDLFRMYQKYAQAQGWTLEVLSANEGEHGGYKEIITRVSGNSVYGRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+PE D ++ DIR DT R+SG+GGQH Sbjct: 180 FESGVHRVQRVPDTESQGRVHTSACTVAVMPEVEIDDTVNLNPADIRFDTFRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+THIPTG +V E+SQH+NR +AMK+L +++ V+ + + R+ Sbjct: 240 VNTTDSAVRLTHIPTGTVVECQQERSQHKNRAQAMKMLISKIQQVKVQAQVDAADTIRRD 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G +D+I++ LL HQA ++ S Sbjct: 300 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDSIMEGDLDEILDALLREHQADLMASV 359 Query: 356 S 356 Sbjct: 360 G 360 >gi|332978486|gb|EGK15198.1| peptide chain release factor RF1 [Psychrobacter sp. 1501(2011)] Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 173/361 (47%), Positives = 251/361 (69%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ + +RF E+ +S+ ++ + + +L+ E++ +S I S Y Q + Sbjct: 1 MKDSLRERLDQMVDRFEEVTALLSDPGTISDNNKFRELSMEHSELSEITSLWQRYRQAET 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++QD +I + SD E++ + Q E+ + +I +E E+N ++LPKD +D LEIR Sbjct: 61 DKQDALEMINEA-SDPEMKAMMQEEIDSAADDIAAMEEELNVMMLPKDPNDKVPAFLEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMYERYA+ + W +EVLS+++ + GGYKEI+ +SG V+ R+K Sbjct: 120 AGTGGDEAAIFSGDLFRMYERYASSQGWTIEVLSANEGEHGGYKEIITRVSGNDVYGRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE D ++ DIR+DT R+SG+GGQH Sbjct: 180 FESGAHRVQRVPETESQGRVHTSACTVAVMPEVKIDDTVELNPADIRMDTFRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+THIPTG++ E+SQH+NR +AM++L AR+ + + + A R+ Sbjct: 240 VNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQMLIARIQQAKVQEQVDTADALRRN 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G +D++++ L HQA ++ S Sbjct: 300 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAIMEGDLDELLDALTREHQADLMASV 359 Query: 356 S 356 S Sbjct: 360 S 360 >gi|260779385|ref|ZP_05888277.1| peptide chain release factor 1 [Vibrio coralliilyticus ATCC BAA-450] gi|260605549|gb|EEX31844.1| peptide chain release factor 1 [Vibrio coralliilyticus ATCC BAA-450] Length = 362 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAKE--DDAEMREMAQEEIKEAQETIERLNDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W+VEV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKKGWRVEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA++ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAIMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMSVLAARIIQAEEAKRAAEESDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +++P++ HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTIYRLNEVMEGDLASLVDPVIQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|333029894|ref|ZP_08457955.1| Peptide chain release factor 1 [Bacteroides coprosuis DSM 18011] gi|332740491|gb|EGJ70973.1| Peptide chain release factor 1 [Bacteroides coprosuis DSM 18011] Length = 361 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 235/353 (66%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ DL RF E+ +++ + ++KLT+EY +S +++ Y Q + Sbjct: 9 KLEDLVARFDEVSTLITDPAVIADQTRFVKLTKEYKELSDLMNARKEYIAALQGVTEAKE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I H SD E++++A+ E+ E I ELE I LL+PKD D+++ I+EIRAGTGG E Sbjct: 69 IIA-HESDPEMKEMAREELEDCETRIPELEETIKLLLIPKDPQDERNAIMEIRAGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY +Y + W VE+ + ++ GG+KEIV ++SG V+ +K+ESGVHR Sbjct: 128 AALFAGDLFRMYSKYCENKGWTVEINNFNEGTAGGFKEIVFSVSGDNVYGILKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAVLPEA E+DV++ DI + T R+ G+GGQHVN ++ V Sbjct: 188 VQRVPETESQGRVHTSAITVAVLPEAEEVDVELNPADIELQTARSGGAGGQHVNKVETKV 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 +TH PTG++V +SQH NR +AM++LR++LY++E ++ ERS RK + +GDRS Sbjct: 248 MLTHKPTGLVVICQEGRSQHSNREKAMQILRSKLYEIEYEKANKERSEQRKSLVSTGDRS 307 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGRITDHRIN T+Y L+ + G I D I+ L+ A A+ + + Sbjct: 308 AKIRTYNYPQGRITDHRINYTIYNLQAFMDGDIQDCIDHLIVAENAERMKESE 360 >gi|304317929|ref|YP_003853074.1| peptide chain release factor 1 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779431|gb|ADL69990.1| peptide chain release factor 1 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 353 Score = 283 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 179/355 (50%), Positives = 251/355 (70%), Gaps = 7/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ +D + K+ +E+A++ I+ K Y + + + Sbjct: 1 MIDKLKTIEDRYVELSRKLSDPESMKDMDEWKKMAKEHASLEEIVQKYREYKKVLDDIKS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D +++D+AQ E+ ++E+ +L NEI LLLPKD +D+K I+EIRAG G Sbjct: 61 TKEIIEL---DDDLKDMAQEELKSLEERENKLLNEIKLLLLPKDPNDEKDVIMEIRAGAG 117 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA + WK E++SS+ + GG+KE++ I+G+G +SR+KFESG Sbjct: 118 GEEAALFAYDLFRMYTMYAEKKHWKYEIMSSNATELGGFKEVILNIAGKGAYSRLKFESG 177 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TEA GR+HTS ATVAVLPE ++D++I DI+ID R+ G GGQ VNTTD Sbjct: 178 VHRVQRIPTTEAGGRIHTSTATVAVLPEVEDVDIEINPNDIKIDVFRSGGHGGQSVNTTD 237 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI++ E+SQ QNR RAMK+LRA+LY++ R+ E S RKLQ+G+G Sbjct: 238 SAVRLTHIPTGIVISCQDERSQLQNRERAMKILRAKLYEMAREEKEKEISMTRKLQVGTG 297 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRI LTLYKL+ VL G +D+II+ LL QA+ + S Sbjct: 298 DRSERIRTYNFPQGRVTDHRIGLTLYKLQMVLDGDLDEIIDALLAEDQAERLESM 352 >gi|220905560|ref|YP_002480872.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|254790877|sp|B8J4R4|RF1_DESDA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219869859|gb|ACL50194.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 356 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 185/353 (52%), Positives = 254/353 (71%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+E +++ + Y KLT+ +A +S ++ + +E + Sbjct: 4 KLEGLEKKYLELEEALAQPDVFNDQDQYRKLTKAHADLSDVVELFRRHRAVSEELAENRL 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D EIR +AQ EV E E+ LE+E+ +LLP D D+K+ ILEIRAGTGG E Sbjct: 64 LLHDE--DPEIRAMAQEEVHRGEAELPNLEHELKVMLLPSDPLDEKNTILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA L+ WKVE++S S +++GGYKEI+ I+G V+S +KFE+G HR Sbjct: 122 AALFAADLFRMYTRYAELKNWKVEIMSESPSENGGYKEIICLIAGDRVYSHLKFEAGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATEA GR+HTSAATVAV+PEA E+DV+I ED+RID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATEAQGRIHTSAATVAVMPEAEEVDVEIRPEDLRIDIYRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT +V E+SQH+N+ RAMKVL +R+ ER+R ++E SA+RK Q+GSGDRS Sbjct: 242 RITHLPTNTVVTCQDERSQHKNKARAMKVLASRILAAERERQSSELSADRKAQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF QGR TDHRINLTLY L+ +++G ++ ++ L TA QA+ + + + Sbjct: 302 ERIRTYNFPQGRCTDHRINLTLYSLDRIMEGELESLVEALGTAAQAEALKAQA 354 >gi|88800296|ref|ZP_01115863.1| peptide chain release factor 1 [Reinekea sp. MED297] gi|88777011|gb|EAR08219.1| peptide chain release factor 1 [Reinekea sp. MED297] Length = 361 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 250/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M H+++ +L R+ E+ L +S+ + + + ++EYA + ++ S Y + Sbjct: 1 MKDSIHQKLTELTERYEELGLLLSQPDVISDQTAFRQYSQEYAELENVVQCFSRYTACEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D ++R++ + E+ + E EL+ ++ LLLPKD +D K+ LE+R Sbjct: 61 DIEAARGLLDDE--DPDMREMGKDELASAEALREELDEQLQILLLPKDPNDHKNVYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA W+VEVLS+S+ + GGYKEI++ +SG V+S++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAEKMGWRVEVLSASEGEHGGYKEIISRLSGERVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PEA E ++I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMPEADELESIEIDKNDLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+TH+PTGI+V E+SQH+N+ RAM +L A+L D + A E++ RK Sbjct: 239 VNKTDSAIRLTHLPTGIVVECQDERSQHKNKARAMSLLAAKLKDAQESAAAREQADQRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D II PLL HQA++ Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEVIGGQLDHIIQPLLQEHQAQLFAEM 358 Query: 356 SE 357 + Sbjct: 359 GQ 360 >gi|167759398|ref|ZP_02431525.1| hypothetical protein CLOSCI_01745 [Clostridium scindens ATCC 35704] gi|167662955|gb|EDS07085.1| hypothetical protein CLOSCI_01745 [Clostridium scindens ATCC 35704] Length = 356 Score = 282 bits (722), Expect = 4e-74, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 243/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R E+ + E + + KL +E ++PI+ Y KQ +D Sbjct: 3 DKLEDLLIRLEEVLSELQEPNVANDQNRFRKLMKEQNELTPIVEAYKEYKACKQAIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ + + ELE+E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 QMLEEESD-EEMRELAKEELNDSKARVEELEHELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WKVE++ + GG K + I+G+G +S MK+ESGVH Sbjct: 122 EAALFAAEIYRMYLHYAESRRWKVELVECEEIGIGGMKNVTFMINGKGAYSVMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA ++D+ I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEDVDIQIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + RK QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFALLRAKLYDMECQKRHDAEAEARKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYKL+ ++ G I +II+ + A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIGLTLYKLDKIMNGDIQEIIDACIAADQAAKLANMNE 356 >gi|39998194|ref|NP_954145.1| peptide chain release factor 1 [Geobacter sulfurreducens PCA] gi|61214645|sp|Q748B1|RF1_GEOSL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|39985140|gb|AAR36495.1| peptide chain release factor 1 [Geobacter sulfurreducens PCA] gi|298507132|gb|ADI85855.1| peptide chain release factor 1 [Geobacter sulfurreducens KN400] Length = 355 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 258/355 (72%), Gaps = 8/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I +L+ R+ E+E +++ + + +L+ E+ ++P+I Y + +E + Sbjct: 3 EKIEELEVRYHELESLLADPAVLGNQPEFRRLSREHNDLTPLIESYRTYKKVLEEMEGNR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++AQ E+ +E+ ELE EI LLLP+D +DD++ ILEIRAGTGG Sbjct: 63 ELLA----DPEMKEMAQAELEELEQRQEELEGEIKLLLLPRDPNDDRNVILEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY R+A +WKVEV+S+S+++ GG+KEIVA I G+GVF+++K+ESG H Sbjct: 119 ESALFAGDLFRMYSRFAERNRWKVEVMSASESERGGFKEIVALIEGQGVFAKLKYESGTH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVAVLPEA +I+VDI D++ID RASG+GGQHVN T+SA Sbjct: 179 RVQRVPETEAQGRIHTSACTVAVLPEAEDIEVDINPADLKIDVYRASGAGGQHVNKTESA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V E+SQ +NR +AMKVL+ ++ D + +A+RK Q+GSGDR Sbjct: 239 VRITHIPTGIVVECQDERSQIKNRAKAMKVLKTKILDGLHQEQNARIAADRKQQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+L+ +++G I ++++ L T +Q + + + +E Sbjct: 299 SERIRTYNFPQGRMTDHRIGLTLYRLDSLMEGDIAEVVDALRTHYQMEALKAQAE 353 >gi|160947003|ref|ZP_02094206.1| hypothetical protein PEPMIC_00965 [Parvimonas micra ATCC 33270] gi|158447387|gb|EDP24382.1| hypothetical protein PEPMIC_00965 [Parvimonas micra ATCC 33270] Length = 365 Score = 282 bits (722), Expect = 5e-74, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 249/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L +F E+E ++ + + + KL +E+ + PI+ K Y + K+E ++ Sbjct: 12 DKLELLVEKFEELEKKIIDPEIMKDMNVWQKLAKEHGDMKPIVEKYREYSKHKKELEENK 71 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+++L + E+ +E I + E ++ LLLPKD +D+K+ +E+RAGTGG Sbjct: 72 EMLKESLDD-EMKELVKEEISELEDSIEKEEQDLKILLLPKDPNDEKNVFMEVRAGTGGD 130 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF DL RMY +A +KWK E++S S+ GG KE+V + G G +S++K+ESGVH Sbjct: 131 EAGLFAEDLLRMYRMFADKQKWKTEIMSISEQGVGGIKEVVFLVKGHGAYSKLKYESGVH 190 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+SGR+HTSAATVAVLPE ++DV I D+RID RASG+GGQ VNTTDSA Sbjct: 191 RVQRVPATESSGRIHTSAATVAVLPEVEDVDVVINQNDLRIDVYRASGNGGQCVNTTDSA 250 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++V EKSQ +N+ +AMK+L++RLY+ ++ + + RK QIGSGDR Sbjct: 251 VRITHIPTGVVVTCQDEKSQLKNKEKAMKILKSRLYEKYQEEQNKDIADARKSQIGSGDR 310 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRIN+T+Y+L+ L G I ++I+ L+T+ QAK + + +E Sbjct: 311 SERIRTYNFPQGRVTDHRINMTIYQLDSFLNGDISEMIDALITSDQAKKMLAIAE 365 >gi|114777343|ref|ZP_01452340.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1] gi|114552125|gb|EAU54627.1| peptide chain release factor 1 [Mariprofundus ferrooxydans PV-1] Length = 357 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 183/355 (51%), Positives = 254/355 (71%), Gaps = 4/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++ ++ +R EI + +++ Y L+ E++ I P+ + Y +Q+ D Sbjct: 1 MNNRLDNILHRREEIAVMLADPDVTSDNKRYTALSREFSEIEPVAEEAQHYLDLQQQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D + D+E++++A+ E I++ I + ++ LLLPKD +D++ ILEIRAGTG Sbjct: 61 NLELIADPDCDAELKEMAEAEAREIKQAISASDAALSMLLLPKDPNDNRDVILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY RYA + +KVE+LS+SD GGYKEI+A ISG GVFSR KFESG Sbjct: 121 GDEAALFAADLFRMYSRYAETQGYKVEILSASDTGIGGYKEIIAQISGNGVFSRFKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTSA TVA+LP A E+D++I ED+RID RASG+GGQHVN T+ Sbjct: 181 AHRVQRVPETESGGRIHTSACTVAILPVAEEVDINIRPEDLRIDVYRASGAGGQHVNKTE 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIP+G++V + SQH+N+ +AMKVL+ARL+D E+ + ERS RK +GSG Sbjct: 241 SAVRITHIPSGLVVTCQDQASQHKNKAQAMKVLQARLFDKEQSELDAERSQARKGMVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYN+ QGRITDHRI LTLYKLE +L G + ++++ L+T HQA+++ + Sbjct: 301 DRSERIRTYNYPQGRITDHRIGLTLYKLEQILGGDMGELLDALITYHQAELLAAQ 355 >gi|283798430|ref|ZP_06347583.1| peptide chain release factor 1 [Clostridium sp. M62/1] gi|291073835|gb|EFE11199.1| peptide chain release factor 1 [Clostridium sp. M62/1] gi|295090782|emb|CBK76889.1| bacterial peptide chain release factor 1 (bRF-1) [Clostridium cf. saccharolyticum K10] gi|295115024|emb|CBL35871.1| bacterial peptide chain release factor 1 (bRF-1) [butyrate-producing bacterium SM4/1] Length = 358 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 256/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ ++ + KL +E A ++PI+ Y Q Q+ +D Sbjct: 3 DRLDDLLIRYEELMEELNNPYVVEDQKKFRKLMKEQADLAPIVEAYKNYKQAHQDVEDSV 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ +K I ELE E+ LLLPKD +D+K+ ++EIRAG GG Sbjct: 63 ALLEEESD-EEMRELAKEELADAKKRIEELEQELKILLLPKDPNDEKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY RYA ++WK E++S ++N GG+KE+V ++G+G +S++K+ESGVH Sbjct: 122 EAALFASELYRMYVRYAERKRWKTEIVSLNENGIGGFKEVVFMVTGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA E D++I + D RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEEFDIEIDMNDCRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++LYD+E +R +E S R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELERRQSEESEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+T+HRI LTLYK++ V+ G +D++I+ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTEHRIKLTLYKIDSVMDGELDELIDSLIAADQAAKLAKLNE 356 >gi|323486285|ref|ZP_08091611.1| hypothetical protein HMPREF9474_03362 [Clostridium symbiosum WAL-14163] gi|323693924|ref|ZP_08108111.1| peptide chain release factor 1 [Clostridium symbiosum WAL-14673] gi|323400395|gb|EGA92767.1| hypothetical protein HMPREF9474_03362 [Clostridium symbiosum WAL-14163] gi|323502021|gb|EGB17896.1| peptide chain release factor 1 [Clostridium symbiosum WAL-14673] Length = 357 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 255/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ ++ + + KL +E A ++P++ Y + Q+ +D Sbjct: 3 DRLDDLLIRYEELLEELNSPDVAMDQNRFRKLMKEQADLTPLVDAYKEYKKANQDVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+RD+A+ E+ +K I E+E ++ LLLPKD +DDK+ ++EIRAG GG Sbjct: 63 ALL-EEESDEEMRDMAKEELADAKKRIEEMEQQLKILLLPKDPNDDKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY +A +WK E++S ++N GG+KE+V ++G+G +S+MK+ESGVH Sbjct: 122 EAALFASELYRMYVHFAESNRWKTELVSVNENGIGGFKEVVFMVTGQGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS A+VAV+PEA E DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTASVAVMPEAEEFDVVIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ N+ + R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELEKRQNQEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+T+HRI LTLYK++ V+ G ++++I+ L+ A QA + E Sbjct: 302 SEKIRTYNFPQGRVTEHRIKLTLYKIDSVMNGELNELIDSLIAADQAAKLAKMGE 356 >gi|290969299|ref|ZP_06560824.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str. 28L] gi|290780805|gb|EFD93408.1| peptide chain release factor 1 [Megasphaera genomosp. type_1 str. 28L] Length = 360 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 166/358 (46%), Positives = 257/358 (71%), Gaps = 5/358 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N++ ++E R+S+ + + KLT+E+A+++PII Y + + + Sbjct: 1 MFLDKVQAVENKYNDLEQRISDPAVIARQKEWQKLTKEHASLAPIIEAYRKYQEVCKTIR 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D ++D+E+ +A+ E+ + KE LE +++ L+LPKD DDK+ I+EIR G Sbjct: 61 GDRELLDDPSTDTELTAMAKEEIAELTKEQAALEEKLHILMLPKDPHDDKNVIMEIRGGA 120 Query: 121 GGSEAALFVGDLFRMYERYAALR-KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDLFRMY +Y + WK E++S+++ + GGYKE+V ++ G GV+ ++K+E Sbjct: 121 GGDEAALFAGDLFRMYMKYIEKQPGWKAELISANEPELGGYKEVVFSVEGAGVYGKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TEA GR+HTS ATVAVLPEA ++++D+ ++D+R+D RASG+GGQH+N Sbjct: 181 SGVHRVQRVPVTEAGGRIHTSTATVAVLPEADDVEIDLDMKDVRVDYFRASGAGGQHINK 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH+P+GI+V E+SQ +NR +A++VL+ARL D ++ A E + R+ Q+G Sbjct: 241 TSSAVRMTHMPSGIVVECQDERSQLENRTKALRVLKARLLDQAQQAAAQEVTEARRSQVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYN+ QGR+TDHRIN+TLYKL+ VL G +D+ I L A +A+++ + Sbjct: 301 TGDRSERIRTYNYPQGRVTDHRINVTLYKLDAVLNGDLDEFIQALAEARRAELMQAEE 358 >gi|209694372|ref|YP_002262300.1| peptide chain release factor 1 [Aliivibrio salmonicida LFI1238] gi|238058709|sp|B6EHH5|RF1_ALISL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|208008323|emb|CAQ78475.1| peptide chain release factor 1 [Aliivibrio salmonicida LFI1238] Length = 362 Score = 282 bits (721), Expect = 5e-74, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 239/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L+ EY+ + + Y++ ++ Sbjct: 1 MKASIRVKLETLVERYEEVQHLLGDPGVIGDQNKFRALSREYSQLEEVTQCFQAYEKVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ ++ L +E+ LL+PKD +D+++C LEIR Sbjct: 61 DLVAAQEMAQE--DDAEMREMAQDEIKEAKEASERLTDELQVLLIPKDPNDERNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F G+LFRMY R+A + W++EV+SS ++ GG+KE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGNLFRMYSRFAEKKGWRIEVMSSHASEQGGFKEMIAKVSGDGAYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA T+AV+ E E D +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTIAVMAEIPEADLPEIKSSDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E R A S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMSVLAARIIQAEEARRAAVVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ Q R++DHRINLT+Y+L V++G + +I P++ +QA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQSRVSDHRINLTIYRLNEVMEGDLAALIEPVVLEYQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|297181249|gb|ADI17443.1| protein chain release factor a [uncultured Rhodospirillales bacterium HF0070_31K06] Length = 357 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 187/355 (52%), Positives = 253/355 (71%), Gaps = 3/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + +R AE+ M+ Y ++EYA +SP++ K ++E Sbjct: 1 MSVMERLDSVISRHAELAALMASGDLDAGQYADYSKEYAELSPVVEKAQELKSLREELGG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D +DSE+++LA+ E + ++ ++E + LLLPKD D+KS ILEIRAGTG Sbjct: 61 LEELLADPETDSEMKELAEAERQELRDQVPDIEESLRILLLPKDAADEKSAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL RMY+RYA + W+ E L S+ + GG KE +I+GRGVF+R+KFESG Sbjct: 121 GDEAALFASDLMRMYQRYAEMHGWRTEFLDLSETELGGVKEAALSIAGRGVFARLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP T++ GR+HTSAATVAVLPEA E+D+ I D+R+DT RASG+GGQHVN TD Sbjct: 181 VHRVQRVPTTDSGGRIHTSAATVAVLPEAEEVDIQIDTSDLRVDTYRASGAGGQHVNKTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITH+PTGI+V EKSQH+NR +AMKVLRARLYD ER+ + ER+A+RK Q+GSG Sbjct: 241 SAIRITHLPTGIVVQCQDEKSQHKNRAKAMKVLRARLYDHERQTLDAERAADRKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR+TDHRINLTL+KL+ +L G +D++++ L+ QA + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLDRILAGDELDEVVDLLIAEDQAARLAE 355 >gi|316932075|ref|YP_004107057.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1] gi|315599789|gb|ADU42324.1| peptide chain release factor 1 [Rhodopseudomonas palustris DX-1] Length = 361 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 184/358 (51%), Positives = 255/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ + Y+++T E + ++P++ + Y Q + E Sbjct: 1 MSSLPEAKLDVLLAHHAALEAQLMAQVGAEDYVRITRELSELNPLVEAVKSYRQVRDELG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ ++ D ++ E+R +A+ E A++ EL +I LLPKD D+++ +LEIRAGT Sbjct: 61 EIDELLEDPATEPEMRAMAEAERDALDAHRDELIQQIRIALLPKDAMDERNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GG+KEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGTVGGFKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE ++DVDI ED+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQEDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD ER+R+ RSA RK ++GS Sbjct: 241 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAEQG 358 >gi|39933683|ref|NP_945959.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009] gi|192289040|ref|YP_001989645.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1] gi|61214634|sp|Q6NC66|RF1_RHOPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229470355|sp|B3QCF6|RF1_RHOPT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|39647529|emb|CAE26050.1| peptide chain release factor 1 [Rhodopseudomonas palustris CGA009] gi|192282789|gb|ACE99169.1| peptide chain release factor 1 [Rhodopseudomonas palustris TIE-1] Length = 361 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 183/358 (51%), Positives = 255/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ + Y+++T E + ++P++ + Y Q + E Sbjct: 1 MSTLPEAKLDVLLAHHAALEAQLMAQVGAEDYVRITRELSELNPLVEAVKSYRQVRDELG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ ++ D ++ E+R +A+ E A++ EL +I LLPKD D+++ +LEIRAGT Sbjct: 61 EIDELLEDPATEPEMRAMAEAERDALDAHRDELIQQIRIALLPKDAMDERNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GGYKEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGTVGGYKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE ++DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKQDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD E++R+ RSA RK ++GS Sbjct: 241 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRLDAARSAERKAKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAEQG 358 >gi|93006237|ref|YP_580674.1| peptide chain release factor 1 [Psychrobacter cryohalolentis K5] gi|119361584|sp|Q1QAW3|RF1_PSYCK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|92393915|gb|ABE75190.1| bacterial peptide chain release factor 1 (bRF-1) [Psychrobacter cryohalolentis K5] Length = 362 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 246/361 (68%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +R+ E+ +S+ + + + +L+ E++ + I + Y ++ Sbjct: 1 MKESLRLRLDQMVDRYEEVTALLSDPSVISDNNKFRELSVEHSDLMDITTLWQNYVGAEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D ++ + SD +++++ Q E+ + I E+E +N ++LPKD +D LEIR Sbjct: 61 DQADAEAMLKEA-SDPDMKEMMQEEIDSARDTIVEMEEALNLMMLPKDPNDKVPAFLEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY+++A + W +E+LS+++ + GGYKEI+ +SG V+ R+K Sbjct: 120 AGTGGDEAAIFSGDLFRMYQKFAQNQGWTLEILSANEGEHGGYKEIITRVSGNSVYGRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GRVHTSA TVAV+PE D D+ DIR DT R+SG+GGQH Sbjct: 180 FESGVHRVQRVPDTESQGRVHTSACTVAVMPEVEIDDTVDLNPADIRFDTFRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+THIPTG +V E+SQH+NR +AMK+L +++ V+ + + R+ Sbjct: 240 VNTTDSAVRLTHIPTGTVVECQQERSQHKNRAQAMKMLISKIQQVKVQAQVDAADTIRRD 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G +D+I++ LL HQA ++ S Sbjct: 300 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDSIMEGDLDEILDALLREHQADLMASI 359 Query: 356 S 356 Sbjct: 360 G 360 >gi|238923860|ref|YP_002937376.1| peptide chain release factor 1 [Eubacterium rectale ATCC 33656] gi|259585240|sp|C4Z911|RF1_EUBR3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238875535|gb|ACR75242.1| peptide chain release factor 1 [Eubacterium rectale ATCC 33656] Length = 358 Score = 282 bits (721), Expect = 6e-74, Method: Composition-based stats. Identities = 170/354 (48%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL + + E+ +SE + + KL +E + ++PI+ Y + KQ +D Sbjct: 3 DKLEDLIHHYEELMNLLSEPDVANDANRFKKLMKEQSDLAPIVETYKKYKECKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R+LA+ E+ ++++ ELE ++ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AIL-DEESDEEMRELAKEELKDSKEQVEELEKKLKILLLPKDPNDDKNVIVEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R WKVE L + + GG K + + G G +S +K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYAENRGWKVETLDADETGIGGMKSVEFMVKGSGAYSILKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+ TS +VAV+PEA ++DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESQGRIQTSTCSVAVMPEAEDVDVKIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LR +LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQIQNKEKAFALLRTKLYDMELQKKQDAEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +E+IRTYNF QGR+TDHRINLTLYKL+ +L G I +II+ + A QAK + + Sbjct: 302 AEKIRTYNFPQGRVTDHRINLTLYKLDKILNGDIQEIIDACIAADQAKKLSNME 355 >gi|261855644|ref|YP_003262927.1| peptide chain release factor 1 [Halothiobacillus neapolitanus c2] gi|261836113|gb|ACX95880.1| peptide chain release factor 1 [Halothiobacillus neapolitanus c2] Length = 364 Score = 282 bits (720), Expect = 7e-74, Method: Composition-based stats. Identities = 168/351 (47%), Positives = 230/351 (65%), Gaps = 10/351 (2%) Query: 3 FLSH---KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 L ++ L R+ E+ +S+ ++ + L++E+A + ++ + Y + K Sbjct: 1 MLPSALLNRLFALSERYDELNALLSDPEVINNQDRFRSLSKEHARLHDLVVVLDRYQKAK 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + Q + + D E+ LA E+ ++ EI L+ + LLP D DD ILEI Sbjct: 61 ADLQAAEHMSKEP--DREMAALALEEMKELQTEIESLDEALKVHLLPHDPADDGDVILEI 118 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 RAGTGG EAA+F GDL RMY +YA + W+ E+LS + GGY+E++A ISG GV++ + Sbjct: 119 RAGTGGDEAAIFAGDLLRMYLKYADTQGWRTEILSEQPGEHGGYREVIAQISGDGVYAAL 178 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQ 235 KFESG HRVQRVP TE GRVHTSAATVAV+P E + +RIDT RASG+GGQ Sbjct: 179 KFESGAHRVQRVPTTETQGRVHTSAATVAVMPVVPESEAITLDPSTLRIDTFRASGAGGQ 238 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 H+N TDSA+R+TH+PTG++V E+SQH+N+ RA+ VL ARL D ER++ E++A RK Sbjct: 239 HINKTDSAIRVTHLPTGMVVECQDERSQHKNKARALSVLAARLADAERQKAHAEQAATRK 298 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L+ VL G +D II+PL Sbjct: 299 ALVGSGDRSERIRTYNFPQGRVTDHRINLTLYQLDRVLLGDLDPIIHPLRQ 349 >gi|163793919|ref|ZP_02187893.1| Protein chain release factor A [alpha proteobacterium BAL199] gi|159181030|gb|EDP65547.1| Protein chain release factor A [alpha proteobacterium BAL199] Length = 356 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 189/357 (52%), Positives = 260/357 (72%), Gaps = 6/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +++ + R E+E R++ + +L++E A ++P++ + + + + E Sbjct: 1 MSLDEKLDRVLTRALELEARLASPDGFVQSDFQRLSKELAELTPVVETVGLLRRTRAELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + SD E+R+LA+ E AIE ++ +LE + LLP+D D ++ ILE+RAGT Sbjct: 61 DAQALA--EESDGEMRELAEEEAAAIEAKLPDLERAMMLHLLPRDEADARNAILEVRAGT 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF MY+RYA R W+ EV+ S+N+ GGYKE +ATISG+ VF+ +KFES Sbjct: 119 GGDEAALFAADLFAMYQRYAQGRGWRFEVMEVSENEIGGYKEAIATISGQSVFAHLKFES 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GR+HTSAATVAVLPEA E+DV I +D+RID R+SG+GGQHVNTT Sbjct: 179 GVHRVQRVPATESQGRIHTSAATVAVLPEAEEVDVAIDDKDLRIDVYRSSGAGGQHVNTT 238 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++VT + KSQH+NR +AMK+LRARL+D ER R +ER+A+RK QIGS Sbjct: 239 DSAVRITHLPTGVVVTQQDEKSQHKNRAKAMKILRARLFDQERTRRDSERAADRKSQIGS 298 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF QGR+TDHRINLTLYK++ V+ G +D+I++ L+ +A+ + + Sbjct: 299 GDRSERIRTYNFPQGRVTDHRINLTLYKIDKVMSGEALDEIVDALIAEDEAERLATL 355 >gi|90581727|ref|ZP_01237514.1| peptide chain release factor 1 [Vibrio angustum S14] gi|90437081|gb|EAS62285.1| peptide chain release factor 1 [Vibrio angustum S14] Length = 362 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 247/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + ++ + + L++EY+ + + Y Q K+ Sbjct: 1 MKQSILVKLETLVERYEEVQHLLGDASVLADQNRFRALSKEYSQLEEVTKCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ + EI L +E+ LL+PKD +DD++C +EIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQEEIKEAKAEIERLADELQVLLIPKDPNDDRNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++E+++ + ++ GGYKE++A ++G GV+ +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAESRGWRIEIINENRSEQGGYKEMIAKVNGDGVYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAVLPE E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVLPEIPEAEIPEINAGDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ E ++ R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIIKAEEEKRHAEEASTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRI LTLY+L V++G +D +I P+ T +QA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRITLTLYRLNEVMEGDLDALIQPVFTEYQADQLAAM 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|299821847|ref|ZP_07053735.1| peptide chain release factor RF1 [Listeria grayi DSM 20601] gi|299817512|gb|EFI84748.1| peptide chain release factor RF1 [Listeria grayi DSM 20601] Length = 358 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 241/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ E+ +S+ V +L ++E ++IS + Y + + + Sbjct: 3 DRLQSVENRYEELNELLSDPDVVSDPKRLRDLSKEQSSISQTVETYRDYKEVTDQIAETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++R++A+ E+ +++ LE ++ LL+PKD +DDK+ I+EIR GG Sbjct: 63 ELLNEKLDD-DMREMAKEELNELQENKTHLEEKLKLLLVPKDPNDDKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA R WK E++ ++ GGYKE++ I+G G FSR+K+E+G H Sbjct: 122 EAALFAGDLFRMYSRYAESRGWKAEIMDANPTGIGGYKEVIVMINGDGAFSRLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA ++++DI +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEDVEIDIQDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQIKNKEKAMKVLRARIYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LT+ KL+ V++G ID+II+ L+ Q + ++ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVMEGKIDEIIDALIVEDQTSKLEHLND 356 >gi|288956982|ref|YP_003447323.1| peptide chain release factor RF-1 [Azospirillum sp. B510] gi|288909290|dbj|BAI70779.1| peptide chain release factor RF-1 [Azospirillum sp. B510] Length = 361 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 184/361 (50%), Positives = 251/361 (69%), Gaps = 7/361 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R+ E+ ++ + + +L++EYA ++PI + I+ + + E D Sbjct: 1 MSLDEKFDKVMARYDELRDTLAAGLAESGDFARLSKEYADLTPIAAAIAELKRGRAEAAD 60 Query: 62 LHTVIG----DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L +I D +D E+R +A+ E + K I ELE ++ LLPKD D+K+ ILE+R Sbjct: 61 LAEMIAAMMGDSGADPEMRSMAEEEFHLLTKRIPELERKVQISLLPKDEADEKNAILEVR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF +LF MY RYA L W+ E + S+ GGYKE A I+GRGVF+++K Sbjct: 121 AGTGGDEAALFAAELFEMYRRYAGLHGWRFEAMDVSETGIGGYKEATANITGRGVFAKLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVPATEA GR+HTSAATVAVLPEA E+D+ I +D+RID R+SG GGQ V Sbjct: 181 FESGVHRVQRVPATEAQGRIHTSAATVAVLPEAEEVDIHIDEKDLRIDVFRSSGPGGQSV 240 Query: 238 NTTDSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTG++V+ + KSQH+N+ +A+KVLRARLYD ER R+A+RK Q Sbjct: 241 NTTDSAVRITHLPTGLVVSQQDEKSQHKNKAKALKVLRARLYDRERAEKDAARAADRKNQ 300 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYK++ V+ G +D++++ L+ +A + Sbjct: 301 VGSGDRSERIRTYNFPQGRVTDHRINLTLYKIDKVMAGEALDELVDALVAEDEAARLAEL 360 Query: 356 S 356 Sbjct: 361 G 361 >gi|283850912|ref|ZP_06368198.1| peptide chain release factor 1 [Desulfovibrio sp. FW1012B] gi|283573835|gb|EFC21809.1| peptide chain release factor 1 [Desulfovibrio sp. FW1012B] Length = 357 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 178/354 (50%), Positives = 261/354 (73%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+E ++S+ V+ Y KLT+ +A ++ +++ + Q ++ ++ Sbjct: 4 KLESLERKYVELEKQLSDPSVVNDQERYRKLTKAHADMADMMAAFREHKQLSRDLEENQE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D E+R+LA E+ AI++ + E+E + LLLPKD DDK+ +LEIRAGTGG E Sbjct: 64 MAQDP--DPEMRELALAEIKAIKEALPEIEARLKLLLLPKDPMDDKNILLEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+WKVE++S S+ GGYKE++A+I+G V+SR+K+ESG HR Sbjct: 122 AALFAGDLFRMYCRYAEARRWKVELMSQSETGSGGYKEVIASIAGDKVYSRLKYESGAHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSA TVA++PEA E+DV I D+RID R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPATESQGRIHTSAVTVAIMPEAEEVDVAIDPNDLRIDVYRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+P+G++V EKSQH+N+ +A+KVLR+RL +E+++ E+ A R+ Q+G+GDRS Sbjct: 242 RVTHVPSGLVVICQDEKSQHKNKAKALKVLRSRLLQIEQEKQRLEQEATRRSQVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF Q R+TDHRINLTLY+LE VL+G +D++ L+ +Q++ + + ++ Sbjct: 302 ERIRTYNFPQSRVTDHRINLTLYRLEAVLEGDLDELCEGLIAHYQSEALKAQAD 355 >gi|77360001|ref|YP_339576.1| peptide chain release factor 1 [Pseudoalteromonas haloplanktis TAC125] gi|119361581|sp|Q3IK95|RF1_PSEHT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|76874912|emb|CAI86133.1| Peptide chain release factor 1 (RF-1) [Pseudoalteromonas haloplanktis TAC125] Length = 361 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 245/355 (69%), Gaps = 7/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R+ E++ +S+ + + + L++EY+ + ++ Y Q +Q+ Sbjct: 8 KLEILVERYEEVQALLSDPSVIRDQNRFRALSKEYSDLEEVVKTFLSYQQAQQDVISAEE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D SD +IR++AQ E + +I +E+EI L+LPKD D+ + LE+RAGTGG E Sbjct: 68 MLKD--SDPDIREMAQEEYKEAKAQILTIEDEIQVLMLPKDPKDNNNVYLEVRAGTGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA +KWKV+V+++++ + GGYKEI+A ISG GVF ++KFESGVHR Sbjct: 126 AAIFAGDLFRMYSRYAETKKWKVDVVTTNEGEHGGYKEIIANISGEGVFGQLKFESGVHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GRVHTSA TVAV+ ++I D+++DT RASG+GGQHVN TDSA Sbjct: 186 VQRVPETESQGRVHTSACTVAVMAEVPEAEAIEINSADLKVDTFRASGAGGQHVNKTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTG++V ++SQH+NR +AM VL ARL E ++ ++ R+ +GSGDR Sbjct: 246 IRITHIPTGVVVECQDQRSQHKNRAKAMSVLAARLQQAEDEKRDAAEASERRNLVGSGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGRITDHRINLTLY+L V+ G + I+ PL+ HQA ++ + + Sbjct: 306 SERIRTYNYPQGRITDHRINLTLYRLNEVVAGDLSCIVEPLMQEHQADLLAAMGD 360 >gi|325285304|ref|YP_004261094.1| peptide chain release factor 1 [Cellulophaga lytica DSM 7489] gi|324320758|gb|ADY28223.1| Peptide chain release factor 1 [Cellulophaga lytica DSM 7489] Length = 358 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 161/357 (45%), Positives = 231/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + Y++L EY + + K +Y + ++ Sbjct: 1 MIDKLNIVKQRFDEVSDLIIQPDIISDQKRYVELNREYKDLKKLCDKRELYLEFTNNIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I D SD+E+ ++A++++ + + LE EI LL+PKD +D K+ ++E+RAGTG Sbjct: 61 ANEIIAD-GSDAEMVEMAKMQLEEAKAGLPPLEEEIKLLLIPKDPEDSKNVVVEVRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y + WK V+ SD GGYKEI ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCESKGWKTNVIDLSDGTSGGYKEIQFEVTGDEVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA + DV I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEDFDVQIDPKDVRIDFFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++ +KSQH+N+ +A +VLR+RLYD+E + E +A R Q+ SG Sbjct: 240 SAVRLTHVPTGLVAQCQDQKSQHKNKEKAFRVLRSRLYDLELAKKQEEDAAKRNSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRI LTLY L+ ++ G I II+ L + + ASE Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNIINGDIQKIIDELRLVENTEKLKEASE 356 >gi|329113396|ref|ZP_08242177.1| Peptide chain release factor 1 [Acetobacter pomorum DM001] gi|326697221|gb|EGE48881.1| Peptide chain release factor 1 [Acetobacter pomorum DM001] Length = 352 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + +R E+E +++ + +A+ + + EYA I P++++I+ + + Sbjct: 1 MKFDERLDQIVSRALELEAQLASGLNGEAFTQASREYAEIEPVVARINALRGVEDGIRQA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+++LA+ E+ + +++ +L+ ++ LLPKD D +S ILE+R GG Sbjct: 61 ELLLA----DPEMKELAEAELTELREQLPQLQKDVRLSLLPKDVADARSAILEVRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +LF MY RYA L W+ V+ +++ GG +E +A I+G+GVF+R+K+ESGV Sbjct: 117 DEAALFAAELFDMYRRYADLNGWRFTVMDYDESELGGLREGIAEINGKGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTS TVAVLPEA ++DV++ D+R+D RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATESQGRIHTSTVTVAVLPEAEDVDVEVNETDLRVDVFRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+P+GI+V+ EKSQH+NR +AMK+LRARLY+ ER + R+A+R+ Q+G+GD Sbjct: 237 AVRLTHMPSGIVVSMQEEKSQHKNRAKAMKILRARLYERERAQAHANRAADRRSQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLTLYK++ V+ G +D+ ++ L QA ++ + Sbjct: 297 RSERIRTYNFPQGRVTDHRINLTLYKIDRVMLGELDEFVDALTQEEQAALLAAEG 351 >gi|328952115|ref|YP_004369449.1| Peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109] gi|328452439|gb|AEB08268.1| Peptide chain release factor 1 [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 282 bits (720), Expect = 8e-74, Method: Composition-based stats. Identities = 175/357 (49%), Positives = 259/357 (72%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++NR+ E+E R+SE ++ Y + E+A +SP+I + Q ++E Sbjct: 1 MLIERLHAIENRYLELEARLSEPETIKNQELYQQYAREHAELSPLIQIFRQHQQVERECD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ +D EI++LA+ E+ +++ + LENE+ +LLLPKD +D K+ +LEIRAGT Sbjct: 61 NNQALLK-TETDEEIKELAREEIQQLKERLEHLENELRFLLLPKDPNDAKNILLEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMY R+A WKVE+LS + GG KEI+A ISG+ V+S +K+ES Sbjct: 120 GGEEAALFAAELFRMYTRFAEQHGWKVEILSHNPTGIGGLKEIIALISGQQVYSLLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSA TVA+LPEA ++DV I E++RID R+SG GGQ VNTT Sbjct: 180 GVHRVQRVPTTESQGRIHTSAVTVAILPEAEDVDVQISPEELRIDVFRSSGPGGQSVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQH+N+ +A+KVL+ARL D++++ + + +RK Q+GS Sbjct: 240 DSAVRITHLPTGMVVTCQDEKSQHKNKAKALKVLQARLLDIKQQEQHQKMAQDRKSQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHR+ LTLY+LE L+G +D++++ L++ ++ + + + Sbjct: 300 GDRSERIRTYNFPQGRVTDHRLGLTLYRLEAFLEGGLDELLDALVSYYRTEALKQQA 356 >gi|225568388|ref|ZP_03777413.1| hypothetical protein CLOHYLEM_04465 [Clostridium hylemonae DSM 15053] gi|225162616|gb|EEG75235.1| hypothetical protein CLOHYLEM_04465 [Clostridium hylemonae DSM 15053] Length = 357 Score = 282 bits (720), Expect = 9e-74, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E V+ + +L +E ++PI+ Y +Q +D Sbjct: 3 DKLEDLLIRYEELMSELQEPDVVNNQERFRRLMKEQNDLAPIVEAYKEYKACRQAIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ + + ELE+E+ LLLPKD +DDK+ ++EIRAG GG Sbjct: 63 LMLEEESD-EEMRELAKDELNESKARVEELEHELKILLLPKDPNDDKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WK E++S S+N GG+KE+V I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYAEGRRWKTEIISISENGIGGFKEVVFMITGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTVTVAIMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLEMEKKQASEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ VL G +D++I+ L+ A QA + + + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSVLNGDLDEVIDSLIAADQAAKLSNLQD 356 >gi|253688500|ref|YP_003017690.1| peptide chain release factor 1 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259585241|sp|C6DHY1|RF1_PECCP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|251755078|gb|ACT13154.1| peptide chain release factor 1 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 360 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q ++++Q Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQQWQQAQEDQQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + I LE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKEGKATIEALEQQLQVLLLPKDPDDERGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+SD + GGYKE++A ISG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWRVEVMSASDGEHGGYKEVIAKISGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+ E E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMAEVPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVQKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPVVQEYQADQLAALSE 358 >gi|147679165|ref|YP_001213380.1| protein chain release factor A [Pelotomaculum thermopropionicum SI] gi|189039982|sp|A5CYC3|RF1_PELTS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146275262|dbj|BAF61011.1| protein chain release factor A [Pelotomaculum thermopropionicum SI] Length = 349 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 170/344 (49%), Positives = 244/344 (70%), Gaps = 5/344 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ ++ ++ E+E + + + + + +A ++ I++ Y + +E QD Sbjct: 1 MIEKLDSIEKKYEELENLIGNPEIIADIARWQEYVKAHAELADIVAVYRDYKKVVKEIQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D ++R++AQ E+ + ++ LEN + LLLPKD +D+K+ ILEIRAGTG Sbjct: 61 TIALMKEEP-DEDLREMAQAELDELTEKKDNLENRLKMLLLPKDPNDEKNVILEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY RYA + W+ E+L ++ D GG+KE+++ I G+GV+SRMKFESG Sbjct: 120 GEEAALFAADLFRMYSRYAERQGWRTEILDANYTDIGGFKEVISLIEGKGVYSRMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+HTSAATVAVLPEA E+DV I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRIPTTESGGRIHTSAATVAVLPEAEEVDVQIDPDDLRIDVFCSSGHGGQSVNTTQ 239 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTGI+V+ EKSQH+N+ +AMKVLRARL D ++ + ++ RK +G+G Sbjct: 240 SAVRITHIPTGIVVSMQDEKSQHKNKEKAMKVLRARLLDRVQQEHQQKIASTRKSMVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 DRSERIRTYNF Q R+TDHR+ LTL++L+ VL G +D+II+ L+ Sbjct: 300 DRSERIRTYNFPQNRVTDHRVGLTLHRLDSVLDGDLDEIIDTLI 343 >gi|50121117|ref|YP_050284.1| peptide chain release factor 1 [Pectobacterium atrosepticum SCRI1043] gi|61214611|sp|Q6D551|RF1_ERWCT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|49611643|emb|CAG75092.1| peptide chain release factor 1 [Pectobacterium atrosepticum SCRI1043] Length = 360 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q ++++Q Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQQWQQAQEDQQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + I LE E+ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKEGKAAIEALEQELQVLLLPKDPDDERGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+SD + GGYKE++A ISG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWRVEVMSASDGEHGGYKEVIAKISGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+ E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMAAVPEAELPDINPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEIHKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIQPVVQEYQADQLAALSE 358 >gi|227513055|ref|ZP_03943104.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577] gi|227083630|gb|EEI18942.1| peptide chain release factor 1 [Lactobacillus buchneri ATCC 11577] Length = 361 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 241/353 (68%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E + ++ + Y + ++ D Sbjct: 6 DKLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+++ + + E+ + + +LE+++ +LLPKD +D+K+ I+EI GG Sbjct: 66 EMLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E +LF DLF MY +YA + WKVEV+ S+ + GG+KEIV I+G V+S++K+E+G H Sbjct: 126 EGSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D+DI +DIR+D R+SG+GGQH+N T SA Sbjct: 186 RVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSA 245 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AMK+L+AR+YD ++ ++ +A RK IG+GDR Sbjct: 246 VRMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +DDI++ L+ + QAK + + Sbjct: 306 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGELDDIVDALILSDQAKKLENL 358 >gi|291561383|emb|CBL40182.1| bacterial peptide chain release factor 1 (bRF-1) [butyrate-producing bacterium SS3/4] Length = 357 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 254/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ L ++ + + KL +E A ++PI+ Y Q KQ+ +D Sbjct: 3 DRLDDMLRHYEELMLELNNPSVAEDQRKFRKLMKEQADLAPIVDAYKQYKQAKQDVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+++LA+ E+ +K I ELE E+ LLLPKD +D+K+ I+EIRAG GG Sbjct: 63 ALL-DEESDEEMKELAKEELADAKKRIEELEQELKILLLPKDPNDEKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA + WK E+++ S++ GG KE+ I+G G +S++K+ESGVH Sbjct: 122 EAALFASELYRMYVHYAESQHWKTEMINVSESGIGGMKEVEFMITGHGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA++PEA E DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAIMPEAEEFDVVIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A ++LR++LYD+E +R NE +A R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELERRQNEEAAERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++I+ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDAIMDGDIQELIDSLIAADQAAKLAKMNE 356 >gi|306820801|ref|ZP_07454426.1| peptide chain release factor RF1 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551191|gb|EFM39157.1| peptide chain release factor RF1 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 357 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 263/355 (74%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +K +F+E+E ++S+ ++ + KL +E+A +SP++ K Y + + + Sbjct: 3 ENLGAVKEKFSELEKKISDPEIINNQEQWQKLMKEHADLSPVVKKYEEYLKANDDIKGAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD ++RDLA+ E+ +E+++ ++ +E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 EIIA-NESDEDLRDLAKEELSGLEEDLTKIIDELKILLLPKDPNDDKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFRMY YAA R+WKVE++SS++ + GGYKE+V I+G+G +SR+KFESGVH Sbjct: 122 EAALFAGVLFRMYSMYAANRRWKVELMSSNETEIGGYKEVVFMITGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAVLPEA +++V++ L D+R+D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESQGRIHTSTVTVAVLPEAEDVEVNLDLNDVRVDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+++ EKSQ +N+ +A K+L+A+LYD+E ++ E ++ RK Q+G+GDR Sbjct: 242 VRLTHIPTGIVISMQDEKSQLKNKDKAFKILKAKLYDMELEKKQKEMASQRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +ERIRTYN+ QGR+++HRI L LYKLE L G +D+II+ L+T QA + S E Sbjct: 302 AERIRTYNYPQGRVSEHRIGLNLYKLESFLNGDLDEIIDALITTDQADKLNSLEE 356 >gi|300814565|ref|ZP_07094819.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511333|gb|EFK38579.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 358 Score = 281 bits (719), Expect = 9e-74, Method: Composition-based stats. Identities = 164/352 (46%), Positives = 244/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++R+ E+E + + ++ Y K E+A + PI+SK Y + K+ D Sbjct: 3 EKLSVFEDRYNELEKSLMDINVINNSSLYQKTAIEHAELQPIVSKYREYKKTKENLNDSK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D +++DL + ++ EK + ++E ++ LL+PKD +D K+ ++EIRAG GG Sbjct: 63 ALLAEKLDD-DMKDLVKDDISTNEKNLEKIEEDLKILLIPKDPNDKKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFR Y RYA WKV+++S+++ GGYKE+V I GRG +SR+K+ESGVH Sbjct: 122 EAALFAGTLFRQYVRYAERCGWKVDIISTNEIGIGGYKEVVFMIIGRGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++V+I +I+ D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEVEIDPTEIKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ N+ +AMK+LRA+LYD++ + + SA R Q+G+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLMNKEKAMKLLRAKLYDLKIQEQNEKNSAQRLSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ QGR+TDHRIN T ++++ + G +D++I+ L A Q K + + Sbjct: 302 SERIRTYNYPQGRVTDHRINYTTHQIDSINDGELDELIDALTAADQIKKLEN 353 >gi|291524540|emb|CBK90127.1| bacterial peptide chain release factor 1 (bRF-1) [Eubacterium rectale DSM 17629] Length = 358 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 170/354 (48%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL + + E+ +SE + + KL +E + ++PI+ Y + KQ +D Sbjct: 3 DKLEDLIHHYEELMNLLSEPDVANDANRFKKLMKEQSDLAPIVETYKKYKECKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+R+LA+ E+ ++++ ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AILNEE-SDEEMRELAKEELKDSKEQVEELEKELKILLLPKDPNDDKNVIVEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R WKVE L + + GG K + + G G +S +K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYAENRGWKVETLDADETGIGGMKSVEFMVKGSGAYSILKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+ TS +VAV+PEA ++DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESQGRIQTSTCSVAVMPEAEDVDVKIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LR +LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQIQNKEKAFALLRTKLYDMELQKKQDAEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +E+IRTYNF QGR+TDHRINLTLYKL+ +L G I +II+ + A QAK + + Sbjct: 302 AEKIRTYNFPQGRVTDHRINLTLYKLDKILNGDIQEIIDACIAADQAKKLSNME 355 >gi|294635783|ref|ZP_06714243.1| peptide chain release factor 1 [Edwardsiella tarda ATCC 23685] gi|291090883|gb|EFE23444.1| peptide chain release factor 1 [Edwardsiella tarda ATCC 23685] Length = 360 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 248/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EY ++ + + Q + + + Sbjct: 8 KLEALQERHEEVQALLGDAGVIADQDRFRALSREYVQLTDVSRCFLDWRQAQDDLETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + + ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEEIKETRERLNELEQQLQILLLPKDPDDERNCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDLFRMY RYA R+W++EV+S+S+ + GGYKE++A +SG G + R+KFESG HR Sbjct: 124 AGLFAGDLFRMYSRYAEARRWRIEVMSASEGEHGGYKEVIAKVSGEGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPEVPEAELPQINPADLRIDTYRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEIAKRQREEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDSLIEPIVQEYQADQLSALSE 358 >gi|311745348|ref|ZP_07719133.1| peptide chain release factor 1 [Algoriphagus sp. PR1] gi|126577889|gb|EAZ82109.1| peptide chain release factor 1 [Algoriphagus sp. PR1] Length = 358 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 233/356 (65%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ LK RF E+ + + Y KLT+EY + I+S Y Q Sbjct: 1 MLDKLQALKERFEEVGQLIILPDSMADMSKYAKLTKEYKDLEKIVSAYDEYSLVLQNITS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D E R++A++E+ + ELE E+ LL+PKD +D K CILEIR G+G Sbjct: 61 SKEML-DKEKDPEFREMAKLEIDELRSRKDELEEELKQLLIPKDPNDSKDCILEIRGGSG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMYER+ ++ WK+ VL + GGYKEI+AT+SG V+ +K+ESG Sbjct: 120 GDEASIFAGDLFRMYERFCEMQGWKLTVLDLTFGSAGGYKEIIATVSGADVYGMLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE+ GRVHTSAA+VAVLPE E++V + + D+R DT +SG GGQ VNTT Sbjct: 180 VHRVQRVPATESQGRVHTSAASVAVLPEMDEVEVHLDMNDVRKDTYCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++V EKSQ +N +A+KVLR+RLY++E + A RK +GSG Sbjct: 240 SAVRLTHNPTGLVVTCQDEKSQIKNFEKALKVLRSRLYEIELAKHNESVGAQRKSMVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS++IRTYN+SQ R+TDHRIN T+Y L V+ G+I++ I+ L A + + ++ Sbjct: 300 DRSDKIRTYNYSQSRVTDHRINKTVYNLPDVMDGHIEEFISALRLAENLEKMQNSG 355 >gi|296101959|ref|YP_003612105.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056418|gb|ADF61156.1| peptide chain release factor 1 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 360 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSKCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + E+E ++ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELQDAKARSEEMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+++ + GG+KE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSANEGEHGGFKEVIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIVQEYQADQLAALSE 358 >gi|304415271|ref|ZP_07395967.1| peptide chain release factor 1 [Candidatus Regiella insecticola LSR1] gi|304282877|gb|EFL91344.1| peptide chain release factor 1 [Candidatus Regiella insecticola LSR1] Length = 360 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M F ++ L+ R+ E+E + ++ + + L+ EYA + I +D ++ Sbjct: 1 MKFSIVTKLQALQERYEEVEAHLGDAEVISDQLRFRTLSREYAQLKDISLCFKQWDGLQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R+LAQ E+ + LE ++ LLLP+D DD++ C LEIR Sbjct: 61 DIETAKKML----DDLEMRELAQDELKEAKIRSEALEQKLQVLLLPQDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WK+EV++ ++ + GGYKE++ I+G GV+ ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAETRRWKMEVININEGEKGGYKEVITKITGNGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E +V +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRIHTSACTVAVMPVLPETEVLEISDNDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A VL AR+ + ER++ +++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAKSVLAARIREAERQKRQQTQASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRSRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDILIEPIVQEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|193214860|ref|YP_001996059.1| peptide chain release factor 1 [Chloroherpeton thalassium ATCC 35110] gi|238692722|sp|B3QYI4|RF1_CHLT3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|193088337|gb|ACF13612.1| peptide chain release factor 1 [Chloroherpeton thalassium ATCC 35110] Length = 358 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 232/354 (65%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +K+R+ EIE ++S+ + D + +L +EY+ +S I+ Y + K Q Sbjct: 3 DQLQSIKDRYKEIEKQLSDPGVISNQDKFRQLNKEYSGLSEIVKAYDEYRKAKDALQQSK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ SD E+++LAQ + +++ ELE ++ LLLPK+ D ++ ++EIRAG GG Sbjct: 63 ELL-YTESDPEMKELAQADYDEYSEKVPELEQQLKILLLPKEEADSRNAMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDN-DDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+R+A WK EVL +++ GG+KE ++SG V+ MKFESGV Sbjct: 122 EAALFAADLLRMYQRFAERNGWKCEVLDYNESSGLGGFKEATISLSGDDVYGTMKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GRVHTSAA+VAVLPEA + D++I ED+++DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPETETQGRVHTSAASVAVLPEAEDFDIEIRKEDLQMDTYRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+P+GI+V E+SQ QNR RAMK+LR++LYD++ ER+ R+ + +GD Sbjct: 242 AVRITHVPSGIVVACQEERSQLQNRERAMKMLRSKLYDIKLAEQQKERADLRRSMVSTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RS +IRTYNF Q R+TDHRI T + L +L G + +II L Q + + + Sbjct: 302 RSAKIRTYNFPQSRVTDHRIGFTTHALPQLLDGDLFEIIEALRVHDQTERLKAQ 355 >gi|298497806|ref|ZP_07007613.1| peptide chain release factor 1 [Vibrio cholerae MAK 757] gi|297542139|gb|EFH78189.1| peptide chain release factor 1 [Vibrio cholerae MAK 757] Length = 362 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEISDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GS DRS+RIRTYN+ QGR++DHRI LT+Y+L V++G + +I+P++ HQA + + Sbjct: 299 LLGSRDRSDRIRTYNYPQGRVSDHRIILTVYRLTEVMEGDMQSLIDPVIHEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|227328865|ref|ZP_03832889.1| peptide chain release factor 1 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 360 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q ++++Q Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQQWQQAQEDQQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + I LE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKESKATIEALEQQLQVLLLPKDPDDERGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+SD + GGYKE++A ISG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEARRWRVEVVSASDGEHGGYKEVIAKISGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+ E E ++ DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMAEVPEAEMPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVQKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPVVQEYQADQLAALSE 358 >gi|291527966|emb|CBK93552.1| bacterial peptide chain release factor 1 (bRF-1) [Eubacterium rectale M104/1] Length = 358 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL + + E+ +SE + + KL +E + ++PI+ Y + KQ +D Sbjct: 3 DKLEDLIHHYEELMNLLSEPDVANDANRFKKLMKEQSDLAPIVETYKKYKECKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R+LA+ E+ ++++ ELE ++ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AIL-DEESDEEMRELAKEELKDSKEQVEELEKKLKILLLPKDPNDDKNVIVEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R WKVE L + + GG K + + G G +S +K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYAENRGWKVETLDADETGIGGMKSVEFMVKGSGAYSILKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+ TS +VAV+PEA ++DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESQGRIQTSTCSVAVMPEAEDVDVKIDDKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH P+GI++ + +EKSQ QN+ +A +LR +LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPSGIVIYSQTEKSQIQNKEKAFALLRTKLYDMELQKKQDAEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +E+IRTYNF QGR+TDHRINLTLYKL+ +L G I +II+ + A QAK + + Sbjct: 302 AEKIRTYNFPQGRVTDHRINLTLYKLDKILNGDIQEIIDACIAADQAKKLSNME 355 >gi|299537972|ref|ZP_07051258.1| peptide chain release factor 1 [Lysinibacillus fusiformis ZC1] gi|298726554|gb|EFI67143.1| peptide chain release factor 1 [Lysinibacillus fusiformis ZC1] Length = 358 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 156/355 (43%), Positives = 238/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V+ KL ++E + I + Y K++ D Sbjct: 3 DRLQAVEDRYERLTELLSDPDIVNDSKKLREYSKEQSDIQETVDTYREYKSVKEQLVDTR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D ++ ++ + E ++ + ELE + LL+PKD +D+K+ I+EIR GG Sbjct: 63 EML-DSEKDPDMHEMVKEEFNLLKAQQEELEERLRILLIPKDPNDNKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY RYA + WK++++ ++ N GGYKE++ I+G+G +S+ KFE+G H Sbjct: 122 EANIFAGDLFRMYSRYAETQGWKIDIMEATPNPMGGYKEVIFMINGQGAYSKFKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATVA LPE E+DV+I +DIR+DT +SG+GGQ VNTT SA Sbjct: 182 RVQRVPATESQGRIHTSTATVACLPEVEEVDVEIHEKDIRVDTFASSGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V+ E+SQ +NR +AMK+LRAR+ D+ + E A RK +GSGDR Sbjct: 242 VRMTHLPTGVVVSMQDERSQIKNREKAMKILRARVADMYMQEAQKEIDATRKSAVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ QA + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGRLDEIIDALILEEQASKLERLND 356 >gi|90416952|ref|ZP_01224881.1| Peptide chain release factor 1 [marine gamma proteobacterium HTCC2207] gi|90331299|gb|EAS46543.1| Peptide chain release factor 1 [marine gamma proteobacterium HTCC2207] Length = 360 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 177/362 (48%), Positives = 250/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E+ +S+ + + L++EY+ + ++ Y + Sbjct: 1 MKASILSKLDHLSERYEEVGALLSDGDIISDQNRFRTLSKEYSELELLVKTYGSYKDVME 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D SD+++RD+AQ E+ + E+ + LE EI LLLPKD D K+ LEIR Sbjct: 61 NIEEAKLLLKD--SDTDMRDMAQEEMRSGEERRQVLELEIQKLLLPKDPKDSKNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA +WKVE++S + D GGYKE++A I G+GV+S++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSKYAETNRWKVEIISENSGDHGGYKEVIARIVGQGVYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++ + ++I D+R+DT RASGSGGQH Sbjct: 179 FESGAHRVQRVPDTESQGRVHTSACTVAIMAEADEQDAIEINKGDLRVDTFRASGSGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+TH+P+G++V E+SQH+NR +AM VL+ARL ++ + +A E+S RK Sbjct: 239 VNKTDSAIRLTHLPSGLVVECQDERSQHKNRAKAMSVLQARLTAMQDEAVAKEQSDQRKN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL V++G +DD++ PL+ QA+ + S Sbjct: 299 LVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLGEVMEGSLDDVLGPLVNEFQAEQLASL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|51891211|ref|YP_073902.1| peptide chain release factor 1 [Symbiobacterium thermophilum IAM 14863] gi|81610729|sp|Q67TD5|RF1_SYMTH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|51854900|dbj|BAD39058.1| peptide chain release factor 1 [Symbiobacterium thermophilum IAM 14863] Length = 356 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 156/356 (43%), Positives = 239/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + R+ ++ ++ + ++ Y ++ E+ + PI+ K Y + ++E D Sbjct: 1 MKQKLEGVVQRYEDLTYKLGDPSVINNPTEYRQVAREHNRLGPIVEKFRAYQKTERELDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + ++ + D E R L E+ ++++++ L +E+ LLLP+D +DDK+ I+EIRAG G Sbjct: 61 VLEML-EGPLDPEERALFNQELRDLKEKLQTLSDELRILLLPRDPNDDKNVIMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF +LFRMY R A KWK EVLS S+N+ GG KE++ I+ G +SR+K+E G Sbjct: 120 GDEASLFAAELFRMYTRLAERHKWKTEVLSISENEAGGIKEVLFQINAEGAYSRLKYEGG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS TVAV+PE E+D++I ED++I+ RA G+GGQHVN T+ Sbjct: 180 VHRVQRVPVTESQGRIHTSTVTVAVMPEMEEVDIEIKPEDLKIEVQRAGGAGGQHVNKTE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V + E+SQ QNR +A++VLRAR+ D ++ +E R+ Q+G+G Sbjct: 240 SAVRMTHLPTGIVVYCADERSQMQNREKALRVLRARVADYYAQQAKSEEEQLRRAQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYNF Q R+TDHRI LT++ + V+ G ID II+ L QA ++ Sbjct: 300 ERSEKIRTYNFPQDRVTDHRIGLTVHNIAAVMDGEIDHIIDALAQHEQAALLAREE 355 >gi|189502103|ref|YP_001957820.1| peptide chain release factor 1 [Candidatus Amoebophilus asiaticus 5a2] gi|238692309|sp|B3ES89|RF1_AMOA5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189497544|gb|ACE06091.1| hypothetical protein Aasi_0702 [Candidatus Amoebophilus asiaticus 5a2] Length = 355 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 159/356 (44%), Positives = 233/356 (65%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ ++ E+ ++ + + Y L + Y +S I+ ++Y + Sbjct: 1 MIDKLEAIEKKYEEVSKQIVDPSIMADMKQYASLNKTYKELSKIVDVYTVYKSNLANLES 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T++ D+ RDLA+ E+ ++E + +LE ++ +LLLPKD +D K+ ILEIRAGTG Sbjct: 61 AKTLLSIEK-DAAFRDLAKEEIDSLELQKTQLEEDLKFLLLPKDPNDSKNVILEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA +F GDLFRMY R+A +WK+ ++ ++ GGYKEI+ +I+G G + +K+ESG Sbjct: 120 GDEAGIFAGDLFRMYSRFAEKMQWKLSIIEEVESTSGGYKEIICSIAGEGAYGMLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTSAA+V VLPE E++VD+ + DIR DT +SG GGQ VNTT Sbjct: 180 VHRVQRVPATETQGRIHTSAASVVVLPEMDEVEVDLDMNDIRKDTFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+R+THIPTGI+V EKSQ +N +A+KVLRARLY+ E K+ + A R+ + SG Sbjct: 240 SAIRLTHIPTGIVVSCQDEKSQIKNLEKALKVLRARLYEQELKKQQDAIGAERRSMVKSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS++IRTYNF QGR+TDHRI T++ L V+ G + D+I L A A+ + + Sbjct: 300 DRSDKIRTYNFPQGRVTDHRIGYTIHNLPAVMDGAVGDLIEALQLADNAERLQQGA 355 >gi|150388171|ref|YP_001318220.1| peptide chain release factor 1 [Alkaliphilus metalliredigens QYMF] gi|166977357|sp|A6TK43|RF1_ALKMQ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|149948033|gb|ABR46561.1| peptide chain release factor 1 [Alkaliphilus metalliredigens QYMF] Length = 357 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 160/355 (45%), Positives = 249/355 (70%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L+ ++ ++ ++S+ ++ + KL +E++ I PI+ K Y +Q + Sbjct: 1 MLDKLAFLQEKYEDLGEKISDPEIINDQVQWQKLIKEHSEIEPIVMKYREYKTTQQALGE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D +D+E++++A++EV +E+ I E+E ++ +LLP D +DDK+ I+EIR G G Sbjct: 61 TKEIMHDKATDAELKEMAKMEVEELEESIVEMEEQLKVMLLPTDPNDDKNVIVEIRGGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF LFRMY RYA WKVE++S +++ GGYKE++ I G+G +S++K+ESG Sbjct: 121 GDEAGLFAAVLFRMYTRYAERSGWKVEMMSLNESGVGGYKEVIFMIKGKGAYSQLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQR+P TE+ GR+HTS ATV ++PEA ++ +V+I ++RID R+SG+GGQ VNTT Sbjct: 181 AHRVQRIPTTESGGRIHTSTATVVIMPEAEDVGEVNIDTNELRIDVFRSSGNGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V KSQ +N+ +AMKVL++RL D + E S +R+ ++G+ Sbjct: 241 DSAVRITHLPTGLVVSCQDGKSQLKNKEKAMKVLKSRLLDQMIQEQDAEISQDRRSKVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF QGR+TDHRIN+T+YKL+ L G I+++I+ L+T+ QA+ + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINVTVYKLDAFLDGEINEMIDSLITSAQAEKMQE 355 >gi|299132853|ref|ZP_07026048.1| peptide chain release factor 1 [Afipia sp. 1NLS2] gi|298592990|gb|EFI53190.1| peptide chain release factor 1 [Afipia sp. 1NLS2] Length = 358 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 194/348 (55%), Positives = 254/348 (72%), Gaps = 2/348 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L ++ L R A +E + S + Y++ T E A ISP++ + Y E DL Sbjct: 1 MLPDAKLDILLARHAALEAELMAQVSAETYVRATRELAEISPVVEAVKAYRAGASEIADL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D +D+++R +A+ E + + LE +I LLPKD D+++ +LEIRAGTGG Sbjct: 61 EAMIADPATDADMRAMAESERPVLLERQESLEQQIRVALLPKDAMDERNVVLEIRAGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF GDLFRMYER+AAL+ WKVEV+S+S+ GGYKEIVA + GRG F+++KFESGV Sbjct: 121 DEASLFAGDLFRMYERFAALQGWKVEVMSASEGTMGGYKEIVAEVQGRGAFAKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEASGR+HTSAATVAVLPEA ++D+DI D+RI+TMRA G+GGQHVN T+S Sbjct: 181 HRVQRVPDTEASGRIHTSAATVAVLPEAEDVDIDIKDSDLRIETMRAQGAGGQHVNKTES 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPTGI+V +SQH+NR AM +LR+R+ D ER+R A ERSA+R+ Q+GSGD Sbjct: 241 AIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRVLDGERQRAAAERSADRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQ 348 RSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++++ L T HQ Sbjct: 301 RSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTEHQ 348 >gi|300727227|ref|ZP_07060643.1| peptide chain release factor 1 [Prevotella bryantii B14] gi|299775465|gb|EFI72059.1| peptide chain release factor 1 [Prevotella bryantii B14] Length = 370 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 221/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + ++KLT+EY +S I+ Y ++ Sbjct: 9 EKLEGLESRFEEVSTLITDPSVIADQPRFVKLTKEYKDLSDIMDARKRYIACLNSIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD +++++A+ E+ E +LE EI L+PKD +D K+ +EIRAG GG Sbjct: 69 DILA-NESDPDMKEMAREELSENEALQPKLEEEIKIALVPKDPEDAKNVQMEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++Y R W + + S+S+ GG+KEI ISG V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKKYCDKRGWTLSITSTSEGAVGGFKEIDCAISGDNVYGVLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ S+ RK Sbjct: 248 VRLRYPWKNPNTGEIEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYLDDISSRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFLNGDIQDMIDALTVAENAEKMKE 367 >gi|332306089|ref|YP_004433940.1| peptide chain release factor 1 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173418|gb|AEE22672.1| peptide chain release factor 1 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 362 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 252/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E++ +S+ + D Y LT+EY+ + ++ + Y +Q Sbjct: 1 MKESVQRKLESLTERFEEVQALVSQPEIIADQDKYRALTKEYSQLEGVVKCFADYQSAQQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + SD E+R++AQ E + + I + E+E+ LLLPKD +D+ +C +EIR Sbjct: 61 DFESAQEMMQE--SDPEMREMAQEEYKSSKLAIEQYEDELQILLLPKDPNDESNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA R+WKVEV++ ++ D GGYKE++A I G G + +K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEARRWKVEVVTMNEGDHGGYKEVIANIIGDGAYGILK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TV V+PE AE + +++ D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVAESEAIEVNKADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR +AM VL++RL +E ++ E ++ R+ Sbjct: 239 VNKTDSAIRITHVPSGIVVECQDERSQHKNRAKAMAVLQSRLNQLEEEKRQAEETSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR+TDHRINLTLY+L+ V+ G +D ++ P+ HQA ++ S Sbjct: 299 LVASGDRSERIRTYNFPQGRVTDHRINLTLYRLDDVVAGDLDAVLEPIRQEHQADLLASL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|188995885|ref|YP_001930137.1| peptide chain release factor 1 [Porphyromonas gingivalis ATCC 33277] gi|188595565|dbj|BAG34540.1| peptide chain release factor 1 [Porphyromonas gingivalis ATCC 33277] Length = 352 Score = 281 bits (718), Expect = 1e-73, Method: Composition-based stats. Identities = 154/352 (43%), Positives = 226/352 (64%), Gaps = 5/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L++RF EI +++ + + KL++EY + I + Y ++ Sbjct: 1 MDGLESRFEEISTLITDPAVIADMKRFTKLSKEYRDLEKIHTAGRDYRNLLANIEEAKHT 60 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + SD E+R++A+ + + + LE EI LL+P + +DDK+ I+EIR GTGG EA Sbjct: 61 MA-KESDEELREMAREMLAEANERLPILEEEIKMLLIPANPEDDKNAIVEIRGGTGGDEA 119 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF GDL+RMY +Y + W+VEV S+ GGYKEIV ++ G GV+ +K+ESGVHRV Sbjct: 120 ALFAGDLYRMYVKYCESKGWQVEVTDLSEGATGGYKEIVFSVKGEGVYGILKYESGVHRV 179 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATE GR+HTSAATVAVLPEA E+DV+I DI + T R+ G+GGQ+VN ++ V+ Sbjct: 180 QRVPATETQGRIHTSAATVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNVNKVETKVQ 239 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH PTG++V +SQ NR AM++LR++LYD+E + +A RK + +GDRS Sbjct: 240 LTHKPTGMVVVCQQARSQIANRELAMQMLRSKLYDIELSKHNEAIAARRKTMVSTGDRSA 299 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGR+TDHRIN+T+Y L V+ G + I+ L+ A + + A+ Sbjct: 300 KIRTYNYPQGRVTDHRINMTVYNLSAVMDGEVQPFIDALIIAENVERMKEAA 351 >gi|227111330|ref|ZP_03824986.1| peptide chain release factor 1 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 360 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q ++++Q Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRTLSREYAQLTDITGCFQQWQQAQEDQQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + I LE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKESKATIEALEQQLQVLLLPKDPDDERGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+SD + GGYKE++A ISG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWRVEVVSASDGEHGGYKEVIAKISGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+ E E ++ DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMAEVPEAEMPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E ++ E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVQKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPVVQEYQADQLAALSE 358 >gi|49531479|emb|CAG69191.1| peptide chain release factor 1 [Acinetobacter sp. ADP1] Length = 376 Score = 280 bits (717), Expect = 1e-73, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I+ S Y Q ++ Sbjct: 15 MKESLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLNEIVDVWSKYRQAEE 74 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +++ SD + +D+AQ E+ I +LE ++N L++PKD +D + LE+R Sbjct: 75 DIETAESML----SDPDFKDMAQEEIKENRALIEQLEGDLNILMIPKDPNDANAAYLEVR 130 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA R W++EVLS ++ + GGYKE++ + G GV+ R+K Sbjct: 131 AGTGGDEAAIFSGDLFRMYSKYAESRGWRIEVLSENEGEHGGYKEVICRVDGDGVYGRLK 190 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + V+I D+RIDT RASG+GGQH Sbjct: 191 FESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVEINPADLRIDTYRASGAGGQH 250 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 251 INKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMALLVSRLENAKRAAQETATSEMRRD 310 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 311 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 370 Query: 356 SE 357 ++ Sbjct: 371 AQ 372 >gi|268610024|ref|ZP_06143751.1| peptide chain release factor 1 [Ruminococcus flavefaciens FD-1] Length = 357 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 158/355 (44%), Positives = 244/355 (68%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ ++ EI ++S+ V Y +L +EY ++PII K Y + + ++ Sbjct: 3 EKLAAMETKYNEISDKLSQPDIVSDNKLYTQLMKEYKNMTPIIEKYREYKSAQAQNEEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D + +++ Q E+ ++ + + E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 ELLDGGGLDRDFKEMVQAELEESKEAMENVTQELKILLLPKDPNDDKNVIIEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF L+RMY YA R WK EVLS++ + GG+KEI +I G G +SR+K+ESGVH Sbjct: 123 EASLFANSLYRMYTMYAEARGWKQEVLSANPTELGGFKEISFSIEGEGAYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAVL EA +++++I D++ID RASG+GGQH+N T+SA Sbjct: 183 RVQRVPETESQGRIHTSTVTVAVLVEADDVELEINPTDLKIDYFRASGAGGQHINKTESA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRIT++PT ++V E+SQH+N+ +AMK+LR+R+Y+ ++ ++ ++ R+ Q+G+GDR Sbjct: 243 VRITYLPTNVVVECQDERSQHKNKDKAMKILRSRIYEAMQQEQNDKIASERRSQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRI LT+Y+LE +L G +D++ + L TA QA + S E Sbjct: 303 SERIRTYNYPQGRLTDHRIGLTIYRLEDILNGNLDEVFDSLATADQAAKLASQEE 357 >gi|227524270|ref|ZP_03954319.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290] gi|227088501|gb|EEI23813.1| peptide chain release factor 1 [Lactobacillus hilgardii ATCC 8290] Length = 361 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 241/353 (68%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E + ++ + Y + ++ D Sbjct: 6 DKLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+++ + + E+ + + +LE+++ +LLPKD +D+K+ I+EI GG Sbjct: 66 EMLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E +LF DLF MY +YA + WKVEV+ S+ + GG+KEIV I+G V+S++K+E+G H Sbjct: 126 EGSLFAVDLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D+DI +DIR+D R+SG+GGQH+N T SA Sbjct: 186 RVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSA 245 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AMK+L+AR+YD ++ ++ +A RK IG+GDR Sbjct: 246 VRMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +DDI++ L+ + QAK + + Sbjct: 306 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGELDDIVDALILSDQAKKLENL 358 >gi|227510126|ref|ZP_03940175.1| peptide chain release factor 1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190331|gb|EEI70398.1| peptide chain release factor 1 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 357 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 151/352 (42%), Positives = 241/352 (68%), Gaps = 4/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E + ++ + Y + ++ D Sbjct: 6 DKLQAVVDRYDELNELISDPEVIADTQRFMKLSKEEGELRDTVAAYNKYKEVSKQLDDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+++ + + E+ + + +LE+++ +LLPKD +D+K+ I+EI GG Sbjct: 66 EMLREKIDDADLESMVKDEISDFKDQKAKLEDQLKVMLLPKDPNDEKNIIMEIHGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E +LF DLF MY +YA + WKVEV+ S+ + GG+KEIV I+G V+S++K+E+G H Sbjct: 126 EGSLFAADLFSMYSKYAERQGWKVEVIDKSETEVGGFKEIVLMITGDKVYSKLKYENGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D+DI +DIR+D R+SG+GGQH+N T SA Sbjct: 186 RVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSA 245 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AMK+L+AR+YD ++ ++ +A RK IG+GDR Sbjct: 246 VRMTHLPTGIVVAMQDERSQQQNRAKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +DDI++ L+ + QAK + + Sbjct: 306 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMNGELDDIVDALILSDQAKKLEN 357 >gi|258513428|ref|YP_003189650.1| peptide chain release factor 1 [Desulfotomaculum acetoxidans DSM 771] gi|257777133|gb|ACV61027.1| peptide chain release factor 1 [Desulfotomaculum acetoxidans DSM 771] Length = 355 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 172/352 (48%), Positives = 242/352 (68%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ E+ M + + + + + +A + I++ Y Q QE D Sbjct: 3 ERLQKIEERYEELGDLMGDPEVMADHSRWQQYVKAHADMQDIVNVYREYRQLDQEVSDAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D + R++ ++E+ + ++ EL ++ LLLPKD +DDK+ ILE+RAGTGG Sbjct: 63 ELLKDK-LDEDFREMVELELEELSEKKEELVQKLKLLLLPKDPNDDKNVILEVRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA + W+ EVL ++ D GG+KE+V I G+G +SR+KFESGVH Sbjct: 122 EAALFAGDLFRMYTRYAEKQGWRTEVLDANYTDIGGFKEVVCMIEGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTSAATVAVLPEA E+++DI D+RID ++G GGQ VNTT SA Sbjct: 182 RVQRVPSTESGGRIHTSAATVAVLPEAEEVEIDINPNDLRIDVFCSTGPGGQSVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+P+G++V EKSQH+N+ +AM+VLRARL D+ +E ++ RK +GSGDR Sbjct: 242 VRITHLPSGLVVSCQDEKSQHKNKDKAMRVLRARLKDLAESEQRSELASTRKSMVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF Q RITDHRI LT +++ VL G +D+II L+T QA + S Sbjct: 302 SERIRTYNFPQNRITDHRIGLTTHRMPAVLMGEMDEIIEALITTDQADRLRS 353 >gi|94496666|ref|ZP_01303242.1| peptide chain release factor 1 [Sphingomonas sp. SKA58] gi|94424026|gb|EAT09051.1| peptide chain release factor 1 [Sphingomonas sp. SKA58] Length = 361 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 182/355 (51%), Positives = 258/355 (72%), Gaps = 3/355 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +S ++I ++ R E++ M+ + D +++L++EYA I P+ + + +QE L Sbjct: 3 ISAERIAQIEARRDEVQASMTRADLAPDQFVRLSKEYAEIEPVAAAARELRRLRQELAAL 62 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + G +D +RD+AQ E+ ++ ++ E + LLP+D D + +LEIRAGTGG Sbjct: 63 EMMTGGEEADPAMRDMAQEEMQLLKSQLPAAERALALQLLPRDAADARPAMLEIRAGTGG 122 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMY+RYA + WK+E+LS++ ++ GG+KE+VA+I+G GVF+++KFESGV Sbjct: 123 DEAALFAGDLFRMYQRYADTQGWKMEMLSANASEQGGFKEVVASINGAGVFAKLKFESGV 182 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV I D++ID RASG+GGQHVNTTDS Sbjct: 183 HRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADADLKIDIYRASGAGGQHVNTTDS 242 Query: 243 AVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+VT + +SQH+N+ +AM+VLRARLY+ ER+R NE++ RK +GSGD Sbjct: 243 AVRITHVPTGIVVTQQDERSQHKNKAKAMQVLRARLYEAERERTQNEQAGARKAMVGSGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF QGR+TDHRINLTL++L +L+G + ++I+ L +A + Sbjct: 303 RSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALTAEDEAARLAQL 357 >gi|226315063|ref|YP_002774959.1| peptide chain release factor 1 [Brevibacillus brevis NBRC 100599] gi|254790866|sp|C0Z828|RF1_BREBN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226098013|dbj|BAH46455.1| peptide chain release factor 1 [Brevibacillus brevis NBRC 100599] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 165/351 (47%), Positives = 240/351 (68%), Gaps = 5/351 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ RF E+ + + + +L++E +++ ++ Y + D Sbjct: 4 RLSAVEERFEEVTNLLCDPDVISDTKRLRELSKEQSSLEETVTTYREYKSVVSQIDDAKA 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+R++ ++E+ + +LE+ + LLLPKD +D+K+ I+EIR GG E Sbjct: 64 MLEEKLDD-EMREMVKLELNELSARKEQLEDRLKILLLPKDPNDEKNVIVEIRGAAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF LFRMY R+A +K+EVL +S D GGYKEIV ++SGRG +S+MKFESG HR Sbjct: 123 AALFAAVLFRMYTRFAERNAFKIEVLEASPTDIGGYKEIVFSLSGRGAYSKMKFESGAHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+PATE+ GR+HTS ATV VLPEA +++V++ +DIRIDT +SG+GGQ VNTT SAV Sbjct: 183 VQRIPATESGGRIHTSTATVLVLPEAEDVEVEVHEKDIRIDTFCSSGAGGQSVNTTKSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGIMV EKSQH N+ +A++VLRARLYD ++ E A RK +G+GDRS Sbjct: 243 RVTHIPTGIMVSCQDEKSQHSNKDKALRVLRARLYDFYMQQQNAEADATRKSLVGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ERIRTYN+ Q R+TDHRI LTL++LE VL+G +D++I+ L+ Q +++ S Sbjct: 303 ERIRTYNYPQSRVTDHRIGLTLHRLESVLEGEMDEVIDNLIMHEQTELLKS 353 >gi|153814377|ref|ZP_01967045.1| hypothetical protein RUMTOR_00587 [Ruminococcus torques ATCC 27756] gi|317500091|ref|ZP_07958326.1| peptide chain release factor 1 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087685|ref|ZP_08336611.1| peptide chain release factor 1 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848773|gb|EDK25691.1| hypothetical protein RUMTOR_00587 [Ruminococcus torques ATCC 27756] gi|316898576|gb|EFV20612.1| peptide chain release factor 1 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409666|gb|EGG89102.1| peptide chain release factor 1 [Lachnospiraceae bacterium 3_1_46FAA] Length = 356 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 249/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E D + KL +E + ++PI+ + Y Q +Q +D Sbjct: 3 DRLEDLLIRYEEVMGELQEPGVADDPVRFRKLMKEQSDLAPIVEAYNEYKQCRQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R+LA+ E+ K + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 AMLEEESD-EEMRELAKEELSDSRKRVEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WK E++S ++N GG+KE V I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYADSRRWKTEMISLNENGIGGFKECVFMITGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAIMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKQQASEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D+II+ L+ A Q + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDTILNGDLDEIIDSLIAADQTAKLAKME 355 >gi|329770544|ref|ZP_08261922.1| peptide chain release factor 1 [Gemella sanguinis M325] gi|328836293|gb|EGF85962.1| peptide chain release factor 1 [Gemella sanguinis M325] Length = 362 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 235/353 (66%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ R+ ++ +S+ V KL ++E +I +S Y Q+ D Sbjct: 6 QLEVVEERYEKLNELLSDPDVVSDTKKLMEYSKEQRSIEKTVSVFREYKDIVQQINDTKE 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E++++ Q E+ +E + +E E+ LLLPKD +D K+ ++E+R GG E Sbjct: 66 LL-EIEDDKEMKEMMQEEIKELEPTLAPMEEELKILLLPKDPNDGKNVVVEVRGAAGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDL RMY R+A + WKV+VL S+ GG KE + ISG V+S+MKFESG HR Sbjct: 125 AQLFAGDLLRMYTRFAESQGWKVDVLERSETGIGGIKEAIFIISGEDVYSKMKFESGAHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS ATV VLPEA E++++I DIR+DT +SG+GGQ VNTT SAV Sbjct: 185 VQRVPTTESSGRIHTSTATVVVLPEAEEVEIEINENDIRVDTFASSGAGGQSVNTTMSAV 244 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ E+SQ +N+ +AMKVLRAR+YD ++ + A RK ++G+GDRS Sbjct: 245 RLTHIPTGVVVSMQDERSQIKNKEKAMKVLRARVYDKYQQEEQAKFDAERKSKVGTGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+++ L A QA+ + + Sbjct: 305 ERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEVLEALRIAEQAEKMAELN 357 >gi|261821677|ref|YP_003259783.1| peptide chain release factor 1 [Pectobacterium wasabiae WPP163] gi|261605690|gb|ACX88176.1| peptide chain release factor 1 [Pectobacterium wasabiae WPP163] Length = 360 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + E + D + L+ EYA ++ I + Q ++++Q Sbjct: 8 KLEALQERHEEVQALLGEPSVIADMDRFRALSREYAQLTDITRCFQQWQQAQEDQQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ + I LE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKEGKATIEALEQQLQVLLLPKDPDDERGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+S+ + GGYKE++A ISG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWRVEVVSASEGEHGGYKEVIAKISGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+ E E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMAEVPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEIHKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRIRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDTLIQPVVQEYQADQLAALSE 358 >gi|215486443|ref|YP_002328874.1| peptide chain release factor 1 [Escherichia coli O127:H6 str. E2348/69] gi|312966451|ref|ZP_07780673.1| peptide chain release factor 1 [Escherichia coli 2362-75] gi|254790880|sp|B7UQ99|RF1_ECO27 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|215264515|emb|CAS08882.1| peptide chain release factor RF-1 [Escherichia coli O127:H6 str. E2348/69] gi|312288904|gb|EFR16802.1| peptide chain release factor 1 [Escherichia coli 2362-75] Length = 360 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 253/355 (71%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE +++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLHVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|255533998|ref|YP_003094370.1| peptide chain release factor 1 [Pedobacter heparinus DSM 2366] gi|255346982|gb|ACU06308.1| peptide chain release factor 1 [Pedobacter heparinus DSM 2366] Length = 357 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 146/356 (41%), Positives = 230/356 (64%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K R+ ++E ++S + + L +EY + I+ + +Y + Sbjct: 1 MLEKLEAIKLRWEDVEEQLSNPDTMQDMKRFAALNKEYKDLGKIVDEYKVYKNVMSNIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D+E+R++A+ E+ + + ELE ++ +L+P D +D K+ + EIR GTG Sbjct: 61 NKEILS-TEKDAEMREMAKEELDLLLVQQEELEEKVRLMLIPVDPEDAKNAVFEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY R+ + WKVE + ++ GGYKE++ +SG V+ ++K+ESG Sbjct: 120 GDEAALFAGDLYRMYSRFFEQKGWKVETVDVTEGTAGGYKEVILKVSGEDVYGQLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+VAVLPEA EID+ I DI + T R+ G+GGQ+VN + Sbjct: 180 VHRVQRVPDTETQGRVHTSAASVAVLPEAEEIDLYINPADIDLQTSRSGGAGGQNVNKVE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + V++TH P+GI+V E+SQ NR+ AM++LR++LYD+E ++ + +A RK + +G Sbjct: 240 TKVQLTHRPSGIVVVCQQERSQLGNRVIAMEMLRSKLYDIELQKKNGDIAARRKTMVSTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+TDHRI LTLY L ++ G + ++I+ L A A+ + + Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYNLNSIMDGGVQELIDALQFAENAEKLKEGA 355 >gi|149280703|ref|ZP_01886814.1| peptide chain release factor 1 [Pedobacter sp. BAL39] gi|149228568|gb|EDM33976.1| peptide chain release factor 1 [Pedobacter sp. BAL39] Length = 380 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 149/356 (41%), Positives = 232/356 (65%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K R+ ++E ++S + + L +EY + I+ + IY + Sbjct: 24 MLEKLEAIKLRWEDVEEQLSNPDTMQDMKRFAALNKEYKDLGKIVDEYKIYKNVMSNIEA 83 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D+E+R++A+ E+ + K+ E+E ++ +L+P D +D K+ + EIR GTG Sbjct: 84 NKEILS-NEKDAELREMAKEELDLLLKQQEEMEEKVRLMLIPVDPEDAKNAVFEIRGGTG 142 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY R+ + WKVE + ++ GGYKE++ +SG V+ ++K+ESG Sbjct: 143 GDEAALFAGDLYRMYSRFFEQKGWKVETVDVTEGTAGGYKEVILKVSGEDVYGQLKYESG 202 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+VAVLPEA EID+ I DI + T R+ G+GGQ+VN + Sbjct: 203 VHRVQRVPDTETQGRVHTSAASVAVLPEAEEIDLYINPADIDLQTSRSGGAGGQNVNKVE 262 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + V++TH P+GI+V E+SQ NR+ AM++LR++LYD+E ++ + +A RK + +G Sbjct: 263 TKVQLTHRPSGIVVVCQQERSQLGNRVIAMEMLRSKLYDIELQKKNGDIAARRKTMVSTG 322 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+TDHRI LTLY L V+ G + ++I+ L A A+ + S Sbjct: 323 DRSAKIRTYNYPQGRVTDHRIGLTLYNLSGVMDGGVQELIDALQFAENAEKMKEGS 378 >gi|288554407|ref|YP_003426342.1| peptide chain release factor 1 [Bacillus pseudofirmus OF4] gi|288545567|gb|ADC49450.1| peptide chain release factor 1 [Bacillus pseudofirmus OF4] Length = 356 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 162/357 (45%), Positives = 238/357 (66%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ + +S+ + KL ++E + I + Y + + +D Sbjct: 1 MLDRLQSVEDRYNRLNELLSDPDIISDSKKLREFSKEQSDIEETVQAYREYKEVVSQYKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D E+ + + E+ + ELE + LLLPKD +DDK+ I+EIR G Sbjct: 61 AKAMLEDKLDD-EMYAMVKEEMDELSTRQEELEARLKILLLPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF GDL++MY R+A + WK EV+ ++ + GGYKEI+ +++G G +S++K+E+G Sbjct: 120 GDEAQLFAGDLYKMYSRFAEAQGWKTEVIEATSTELGGYKEIIFSVNGAGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E++V+I +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPQTESGGRIHTSTATVAVLPEAEEVEVEIHEKDIRVDTFTSSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG +V EKSQ +N+ +AMKVLRAR+YD ++ + E NRKL +G+G Sbjct: 240 SAVRLTHLPTGTVVSCQDEKSQIKNKEKAMKVLRARVYDKVQREVQAEYDQNRKLAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LT+ KLE +LQG +D++I+ L+ QA+ + +A E Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTIQKLEQILQGKLDEVIDALIVEEQAEAMQNAEE 356 >gi|94971498|ref|YP_593546.1| peptide chain release factor 1 [Candidatus Koribacter versatilis Ellin345] gi|119361503|sp|Q1II28|RF1_ACIBL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|94553548|gb|ABF43472.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Koribacter versatilis Ellin345] Length = 359 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 169/353 (47%), Positives = 245/353 (69%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ ++ E+ ++ V+ Y K + +A ++ ++ K Y + +D Sbjct: 3 ERLDLMEAKYDELTQALASPEIVNDSAKYQKTAKAHAELTQLVQKYREYKDLTRGIKDSR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D+E++ AQ E+ +E+ + +E ++ LLLP+D +DDK+ I+EIRAGTGG Sbjct: 63 QMVAEE-TDAEMKAYAQQELTELEQRLHAVEEDLKVLLLPRDPNDDKNIIVEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF +LFRMY RYA ++WKVEVLSSS++ GG KE++A I GRG +S++K+ESGVH Sbjct: 122 EASLFAAELFRMYNRYAETQRWKVEVLSSSESGVGGLKEVIAIIEGRGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTSA TVAVLPEA E+D+ I +DIRIDT +SG GGQ VNTT SA Sbjct: 182 RVQRVPQTETQGRVHTSAVTVAVLPEAEEVDIKIEAKDIRIDTFCSSGPGGQSVNTTYSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PT +V EKSQ +NR + M+VLRARLY+VE+++ A+ + RK Q+GSGDR Sbjct: 242 VRITHLPTNTVVSCQDEKSQIKNREKGMRVLRARLYEVEQQKQADALAKERKQQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYNF Q R+TDHRI T+++L + G I+ +I L T +QA+ + Sbjct: 302 SEKIRTYNFPQNRVTDHRIGYTVHQLSEFMDGKINALIEALTTHYQAEKLKEQ 354 >gi|56421913|ref|YP_149231.1| peptide chain release factor 1 [Geobacillus kaustophilus HTA426] gi|261420783|ref|YP_003254465.1| peptide chain release factor 1 [Geobacillus sp. Y412MC61] gi|297531578|ref|YP_003672853.1| peptide chain release factor 1 [Geobacillus sp. C56-T3] gi|319768453|ref|YP_004133954.1| peptide chain release factor 1 [Geobacillus sp. Y412MC52] gi|61214572|sp|Q5KUH3|RF1_GEOKA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56381755|dbj|BAD77663.1| peptide chain release factor 1 (RF-1) in translation [Geobacillus kaustophilus HTA426] gi|261377240|gb|ACX79983.1| peptide chain release factor 1 [Geobacillus sp. Y412MC61] gi|297254830|gb|ADI28276.1| peptide chain release factor 1 [Geobacillus sp. C56-T3] gi|317113319|gb|ADU95811.1| peptide chain release factor 1 [Geobacillus sp. Y412MC52] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 237/355 (66%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ + + ++ KL ++E A + + Y +++ + Sbjct: 3 DRLEAVEQRYEKLNELLMDPDVINDPKKLRDYSKEQADLEETVQTYREYKSVREQLAEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++ + E+ +E+ L ++ LLLPKD +D+K+ I+EIRA GG Sbjct: 63 AML-EEKLEPELREMVKEEIGELEEREEALVEKLKVLLLPKDPNDEKNVIMEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ +S GGYKEI+ I+G+G +S++KFE+G H Sbjct: 122 EAALFAGDLYRMYTRYAESQGWKTEVIEASPTGLGGYKEIIFMINGKGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE EI+V+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEMEEIEVEINEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHIPTGIVVTCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LT+ KL+ VL G++D+II L+ QAK + A++ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGHLDEIIEALILDDQAKKLEQAND 356 >gi|331082607|ref|ZP_08331730.1| peptide chain release factor 1 [Lachnospiraceae bacterium 6_1_63FAA] gi|330400226|gb|EGG79868.1| peptide chain release factor 1 [Lachnospiraceae bacterium 6_1_63FAA] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ R EI ++E + + KL +E + + PI + Y K+ +D Sbjct: 3 DKLEDILVRLEEILNELNEPTVANDTARFQKLMKEQSELQPIADAYTEYKNCKETVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R++ + E+ +K I ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 MML-DEESDEEMREMLKEELSDAKKRIEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA + W+ E+LS ++N GG+KE+ I+G+G +S++K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESQNWRTEMLSLNENGIGGFKEVTFMINGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID ++ L D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAIMPEAEEIDFELDLNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLYD+E ++ + + R+ Q+G+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYDMELQKRHDAEAEARRSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRI LTL+KL+ ++ G I ++I+ L+ A QA + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSIMNGDIQEVIDNLIAADQAIRLSGLE 355 >gi|260589191|ref|ZP_05855104.1| peptide chain release factor 1 [Blautia hansenii DSM 20583] gi|260540272|gb|EEX20841.1| peptide chain release factor 1 [Blautia hansenii DSM 20583] Length = 358 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 245/354 (69%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ R EI ++E + + KL +E + + PI + Y K+ +D Sbjct: 3 DKLEDILVRLEEILNELNEPTVANDTARFQKLMKEQSELQPIADAYTEYKNCKETVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R++ + E+ +K I ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 MML-DEESDEEMREMLKEELSDAKKRIEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA + W+ E+LS ++N GG+KE+ I+G+G +S++K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESQNWRTEMLSLNENGIGGFKEVTFMINGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID ++ L D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAIMPEAEEIDFELDLNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLYD+E ++ + + R+ Q+G+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYDMELQKRHDAEAEARRSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF QGR+TDHRI LTL+KL+ ++ G I +II+ L+ A QA + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSIMNGDIQEIIDNLIAADQAIRLSGLE 355 >gi|217967194|ref|YP_002352700.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724] gi|226739103|sp|B8E003|RF1_DICTD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|217336293|gb|ACK42086.1| peptide chain release factor 1 [Dictyoglomus turgidum DSM 6724] Length = 367 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 177/355 (49%), Positives = 255/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++ RF EIE +++ + + Y L +E A I I+ K Y + +E++DL Sbjct: 8 DKLEEIEKRFEEIEGLLAKEDVISDFNKYQSLLKERAKIEEIVDKFREYKRLLKEKEDLE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++R LA+ E+ I++++ ++E E+ LLLPKD +D+K+ I+EIRAGTGG Sbjct: 68 EMVKEE-QDEDLRSLAETELEDIQEKLEKVEFELKALLLPKDPNDEKNIIMEIRAGTGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY YA + WKVE++SS+ GG+KEI+ + G+G +SR+KFESGVH Sbjct: 127 EAALFAADLFRMYLGYAQKKGWKVEIVSSNPTGLGGFKEIIFIVEGKGAYSRLKFESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPE EI+V+I +D+RI+T R+ G+GGQHVN T+S Sbjct: 187 RVQRVPITESSGRIHTSTATVAVLPEMEEIEVEIDPKDLRIETFRSGGAGGQHVNKTESG 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIP+GI+V E+SQHQNR +AMKVLRARLY+ ++ NE ++ R+ Q+G+G+R Sbjct: 247 VRITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKENEIASQRRQQVGTGER 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q R+TDHRIN + ++LE VL G +D+ I+ L+ A + + I E Sbjct: 307 SEKIRTYNFPQRRVTDHRINYSSFQLEEVLSGELDEFIDRLILAEKEEQIKKLFE 361 >gi|164688895|ref|ZP_02212923.1| hypothetical protein CLOBAR_02543 [Clostridium bartlettii DSM 16795] gi|164602099|gb|EDQ95564.1| hypothetical protein CLOBAR_02543 [Clostridium bartlettii DSM 16795] Length = 354 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++++ E+ ++S+ ++ + K +E+A + PI+ K Y + ++ Sbjct: 1 MLNKLQVLEDKYKELTEKISDIEVINDQKTWQKYMKEHADLEPIVMKYREYKEVVDNIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + + E + +E+E+ LLLPKD +D+K+ I+EIR G G Sbjct: 61 SKEILEEESDEELRELAKMELSDL-ESRVEPIEDELKILLLPKDPNDEKNVIVEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLFRMY RYA R+WK E+LS+SD GGYKE+ I G+G +SR+K+ESG Sbjct: 120 GDEAALFAGDLFRMYSRYAERRRWKTELLSASDTGVGGYKEVSFMIKGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE+ GR+HTS ATVAVLPE +++++I D+RID RASG+GGQ VNTTD Sbjct: 180 VHRVQRIPSTESGGRIHTSTATVAVLPEVEDVEIEINPNDLRIDVFRASGNGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG +V EKSQ +N+ +AMKVL+ARLYD ++ +A R+ Q+G+G Sbjct: 240 SAVRITHLPTGEVVSCQDEKSQLKNKEKAMKVLKARLYDKALAEQHDDIAAERRSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR++DHRINLTLYKLE L G +D++I+ L+T Q K + + Sbjct: 300 DRSERIRTYNFPQGRVSDHRINLTLYKLESFLDGDLDEMIDALITEDQTKKMSA 353 >gi|161349962|ref|YP_047013.2| peptide chain release factor 1 [Acinetobacter sp. ADP1] gi|61214614|sp|Q6F9S2|RF1_ACIAD RecName: Full=Peptide chain release factor 1; Short=RF-1 Length = 362 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I+ S Y Q ++ Sbjct: 1 MKESLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLNEIVDVWSKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +++ SD + +D+AQ E+ I +LE ++N L++PKD +D + LE+R Sbjct: 61 DIETAESML----SDPDFKDMAQEEIKENRALIEQLEGDLNILMIPKDPNDANAAYLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA R W++EVLS ++ + GGYKE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAESRGWRIEVLSENEGEHGGYKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHVPTGVVVECQEERSQHKNKAKAMALLVSRLENAKRAAQETATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|255319517|ref|ZP_05360731.1| peptide chain release factor 1 [Acinetobacter radioresistens SK82] gi|262378460|ref|ZP_06071617.1| peptide chain release factor 1 [Acinetobacter radioresistens SH164] gi|255303457|gb|EET82660.1| peptide chain release factor 1 [Acinetobacter radioresistens SK82] gi|262299745|gb|EEY87657.1| peptide chain release factor 1 [Acinetobacter radioresistens SH164] Length = 362 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 165/362 (45%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R+ E+ ++++ + + KL+ E++ ++ I + Y Q + Sbjct: 1 MKESLRLRLDQLSDRYEELTALLADAEVISDNKRFRKLSREHSDLTEITEVWAKYRQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD + +++AQ E+ I LE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEAML----SDPDFKEMAQEEIRENRALIESLESQLNILMIPKDPNDANAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA W++E+LS ++ + GGYKEI+ + G GV+ RMK Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAESCGWRLEILSENEGEHGGYKEIICRVDGDGVYGRMK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + VDI D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVDINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R + S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMSLLVSRLENAKRAAQESATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G ++++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLNELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|319951972|ref|YP_004163239.1| bacterial peptide chain release factor 1 (brf-1) [Cellulophaga algicola DSM 14237] gi|319420632|gb|ADV47741.1| bacterial peptide chain release factor 1 (bRF-1) [Cellulophaga algicola DSM 14237] Length = 372 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 234/358 (65%), Gaps = 5/358 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +K RF E+ + + + Y++L +EY + ++ K +Y + + Sbjct: 14 VMLDKLNIVKQRFDEVSDLIIQPDVISDQKRYVELNKEYKDLKSLVDKRDLYIEFTNNVE 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + +I D SD+E+ ++A++++ + + +LE EI LL+PKD +D K+ ++E+RAGT Sbjct: 74 EAQEIISD-GSDAEMVEMAKMQLEEAKVGLPKLEEEIKVLLIPKDPEDSKNVVVEVRAGT 132 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA++F GDLFRMY +Y + WK V+ S+ GGYKEI ++G V+ +KFE+ Sbjct: 133 GGDEASIFAGDLFRMYTKYCESKGWKTNVIDLSEGTSGGYKEIQFEVTGDNVYGTLKFEA 192 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GRVHTSAATV VLPEA + DV I +D+RID +SG GGQ VNTT Sbjct: 193 GVHRVQRVPQTETQGRVHTSAATVMVLPEAEDFDVQIEPKDVRIDFFCSSGPGGQSVNTT 252 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+THIP+G++ +KSQH+N+ +A KVLR+RLYD E + E +A R Q+ S Sbjct: 253 YSAVRLTHIPSGLVAQCQDQKSQHKNKEKAFKVLRSRLYDQELAKKQEEDAAKRNSQVSS 312 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRS +IRTYN+SQGR+TDHRI LTLY L+ ++ G I II+ L + + ASE Sbjct: 313 GDRSAKIRTYNYSQGRVTDHRIGLTLYDLQNIMNGDIQRIIDELSLVENTEKLKEASE 370 >gi|154252199|ref|YP_001413023.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1] gi|171769599|sp|A7HTY3|RF1_PARL1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|154156149|gb|ABS63366.1| peptide chain release factor 1 [Parvibaculum lavamentivorans DS-1] Length = 355 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 183/357 (51%), Positives = 264/357 (73%), Gaps = 6/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + RF ++ M+ D ++ L++E++ + P+ + I +++E D Sbjct: 1 MIPEERLQSVIARFEAVQSEMNSDVPRDRFVALSKEFSELEPVAAAIGHLLARRREYADA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ ++ ++A+ E+ + +E+ LE+E+ +LLPKD DD++ ILE+RAGTGG Sbjct: 61 EQLLR----VRDMAEMAKEEIARLNEELPRLEHEVQLMLLPKDAADDRNVILEVRAGTGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMYERYA+ + WKVE++++S+ + GGYKEI+A ISG GV++++KFESGV Sbjct: 117 DEAALFAGDLFRMYERYASNQGWKVELIAASEGEMGGYKEIIAGISGPGVYAKLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAATVAVLPEA E+DV+I +D+RID RASG+GGQHVN T+S Sbjct: 177 HRVQRVPVTEGGGRIHTSAATVAVLPEAEEVDVEIEDKDLRIDVYRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V + KSQH+N+ RAM++LRAR++D ER+R+ ERSA RK Q+GSGD Sbjct: 237 AVRITHLPTGIVVAQQDEKSQHKNKARAMQILRARIFDAERERLDRERSAARKGQVGSGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF Q R+TDHRINLTL+KL+ VL+G + ++I+ L+ QA + + + Sbjct: 297 RSERIRTYNFPQSRVTDHRINLTLHKLDQVLEGEALGELIDALIAEDQAARLAAMGD 353 >gi|237731780|ref|ZP_04562261.1| peptide chain release factor 1 [Citrobacter sp. 30_2] gi|226907319|gb|EEH93237.1| peptide chain release factor 1 [Citrobacter sp. 30_2] Length = 360 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQDRFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE + LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKCEQLEQHLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GG+KE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSASEGEHGGFKEVIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E R ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVARRQQAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEYQADQLAALSE 358 >gi|163750755|ref|ZP_02157990.1| peptide chain release factor 1 [Shewanella benthica KT99] gi|161329450|gb|EDQ00444.1| peptide chain release factor 1 [Shewanella benthica KT99] Length = 361 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S+ + + L++EY+ + +++ + Q + Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDPGIIADQTRFRALSKEYSQLEDVVAAFKGFQQATE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + +D EI+ +AQ E+ + I++LE+E+ LLLPKD +DD + +EIR Sbjct: 61 DLDAAKEMLSE--NDPEIKQMAQEEMKEAKSLIKKLEDELQILLLPKDPNDDNNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDL+RMY RY +W+ E++++++ + GG+KEI+ +SG GV+ R+K Sbjct: 119 AGAGGDEAAIFAGDLYRMYSRYFESNRWQTEIMNANEGEHGGFKEIIIKVSGEGVYGRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVL E E + D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLVEVPEAEAIKINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIP+GI+V ++SQH+NR +AM VL AR+ VE ++ + R+ Sbjct: 239 VNKTDSAIRLTHIPSGIVVECQDQRSQHKNRAQAMSVLTARIQAVEDEKRRSVEETTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR++DHRINLTLY+L +++G +D +I PL+ +QA M+ + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVSDHRINLTLYRLNEIMEGELDVLIVPLMQENQADMLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|260062127|ref|YP_003195207.1| peptide chain release factor 1 [Robiginitalea biformata HTCC2501] gi|88783689|gb|EAR14860.1| peptide chain release factor 1 [Robiginitalea biformata HTCC2501] Length = 358 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 165/357 (46%), Positives = 228/357 (63%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + YI+L +EY + I+ Y Q + + Sbjct: 1 MLDKLNIVKQRFDEVSDLIIQPDIIADQKRYIQLNKEYKDLKEIVDMREKYIQLQNRISE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D SD E+ ++A++++ + I LE+ I L+PKD +D K ++EIRAGTG Sbjct: 61 AEEILSD-GSDPEMAEMAKLQLEEAREAIPPLEDAIKMKLIPKDPEDAKDVVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y R WK V+ S+ GG+KEI +SG V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCESRGWKTNVIDLSEGTSGGFKEIHFEVSGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA + DV I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEDFDVQIDPKDVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+ EKSQH+N+ +A KVLR+RLYD+E + E +A R Q+ SG Sbjct: 240 SAVRLTHVPTGIVAQCQDEKSQHKNKDKAFKVLRSRLYDMELAKKQEEDAAKRNSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRI LTLY L+ ++ G I II+ L+ + + ASE Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNIINGDIQKIIDELMLVENTEKLREASE 356 >gi|258592988|emb|CBE69299.1| peptide chain release factor 1 [NC10 bacterium 'Dutch sediment'] Length = 358 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ ++ R E+ L+M + + + +L + +A + P++ Y + Q+ ++ Sbjct: 5 RERLDAIEQRSTEVLLQMGDPAIITDQARFQRLAKAHAELEPVVEAYQQYRKLLQDLEET 64 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D D ++R+LA+ E+ + + +LE E+ LLLP+D D+KS ILE+RAG GG Sbjct: 65 KALLHDGTED-DVRELAEAELKELAVKREKLEEELTLLLLPRDPADEKSIILEVRAGAGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +L RMY RYA LR WKVE+LSSS GG KE + +I GRG +SR+KFESGV Sbjct: 124 DEAALFAAELVRMYGRYAELRGWKVEMLSSSQTGVGGVKEAILSIEGRGAYSRLKFESGV 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+SGR+HTS TVAVLPEA ++++ I +D+RID R++G GGQ VNTTDS Sbjct: 184 HRVQRVPVTESSGRIHTSTVTVAVLPEAEDVEIQIDPKDLRIDVFRSTGPGGQSVNTTDS 243 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V EKSQH+NR +AMKVLRARL + + A E S R+ Q+G+GD Sbjct: 244 AVRITHLPTGMVVSCQDEKSQHKNRAKAMKVLRARLLEAATAQQAAEISQARRQQVGTGD 303 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF QGR+TDHRI LTL+ L +L+G I+++I L + QA + + Sbjct: 304 RSERIRTYNFPQGRVTDHRIGLTLHSLPRILEGEIEELIGALAASDQAARLKAL 357 >gi|94500021|ref|ZP_01306556.1| peptide chain release factor 1 [Oceanobacter sp. RED65] gi|94427879|gb|EAT12854.1| peptide chain release factor 1 [Oceanobacter sp. RED65] Length = 363 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 182/361 (50%), Positives = 252/361 (69%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ EI +S++ + + + +L++EYA I P++ + Y Q ++ Sbjct: 1 MKESVKVKLQTLDERYEEIGHLLSDAGVISDQNKFRELSKEYAEIEPVVKAFAQYTQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D D ++R++ Q E A ++EI L+ E+ LLLPKD +D K+ ILEIR Sbjct: 61 NLAEAEALAKD--DDPDMREMGQEEYSAAKEEIERLDGELQILLLPKDPNDGKNVILEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R WK EV+S+++ + GGYKE++ I+G GV+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYTRYAEKRGWKCEVMSANEGEHGGYKEVITRIAGDGVYGQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE D DI D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEIENEDDVDINKADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM +L RL D ++ E++A RK Sbjct: 239 VNKTDSAIRITHLPTGLVVECQEERSQHKNRAKAMSILATRLNDAVVQKAQAEQAAERKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR++DHRINLT+YKL+ ++QG +D II PLL HQA+++ S Sbjct: 299 LVGSGDRSERIRTYNYPQGRVSDHRINLTVYKLDELMQGDVDMIIQPLLQEHQAELLASM 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|299144121|ref|ZP_07037201.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518606|gb|EFI42345.1| peptide chain release factor 1 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 356 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 170/352 (48%), Positives = 247/352 (70%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ E+E ++ + ++ Y K+ E+A I P++ K Y +D Sbjct: 3 ENLQVFDEKYIELEQKLMDINVINDSKLYQKIAIEHAEIEPVVLKYREYKTLISNLEDNK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ D ++RDL + ++ E++I LE+EI LL+PKD +D K+ I+EIRAG GG Sbjct: 63 EMLNENLDD-DMRDLIKEDIKDSEEKISVLEDEIKILLIPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFR Y R+A WKVE++S+++ GGYKE++ I GRG +SR+K+ESGVH Sbjct: 122 EAALFAGVLFRQYVRFAERMGWKVEIMSTNEIGIGGYKEVIFMILGRGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA ++++DI DI+ D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESSGRIHTSTATVAVLPEAEDVEIDIEPSDIKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +AMK+L+ +LYD++ + E S +K QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLRNKEKAMKILKTKLYDLKLQEQNAELSMQKKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ QGR+TDHRI LTL+K++ ++ G +D+II+ L+ + QA I + Sbjct: 302 SERIRTYNYPQGRVTDHRIGLTLHKIDSIVDGDLDEIIDALIASDQASKIEN 353 >gi|91974579|ref|YP_567238.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB5] gi|119361592|sp|Q13F02|RF1_RHOPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91681035|gb|ABE37337.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas palustris BisB5] Length = 361 Score = 280 bits (716), Expect = 2e-73, Method: Composition-based stats. Identities = 186/358 (51%), Positives = 257/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ Y+++T E + ++P++ + Y + + E Sbjct: 1 MSKLPEAKLDVLLAHHASLEAQLLGEVGASEYVRITRELSELNPLVEAVKAYREVRDELG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ ++ D ++DSE+R +A+ E A++ EL EI LLPKD D+++ +LEIRAGT Sbjct: 61 DVDALLEDPDTDSEMRAMAEAERDALDAHRAELIQEIRVALLPKDAMDERNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++AAL+ W VEV+S+S+ GG+KEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAALQGWSVEVISASEGSMGGFKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE E+DVDI +D++IDTMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKADDLKIDTMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITH+PTGI+V +SQH+NR AM +LR+R+YD E++R+ RSA RK ++GS Sbjct: 241 ESAIRITHLPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAEQQRLDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQG 358 >gi|154482489|ref|ZP_02024937.1| hypothetical protein EUBVEN_00156 [Eubacterium ventriosum ATCC 27560] gi|149736690|gb|EDM52576.1| hypothetical protein EUBVEN_00156 [Eubacterium ventriosum ATCC 27560] Length = 356 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 254/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ EI ++++ V + + KL +E + ++PI+ Y + KQ +D Sbjct: 3 DKLDGILERYDEIMEQLNDPNVVSDQNNFRKLMKEQSDLAPIVEAYKAYKEAKQTVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I D SD E+R+LA+ E+ +++I ELE ++ LLLPKD +DDK+ ++EIR G GG Sbjct: 63 -MILDEESDEEMRELAKEEMNEAKEQITELEEKLKILLLPKDENDDKNVVVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA + WK E++S ++N GG+KE+V I+G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYCMYAETQHWKTEMISVNENGLGGFKEVVFMINGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS ATVA++PEA E+DV+I + D R D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPVTESGGRIHTSTATVAIMPEAEEVDVEIDMNDCRFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLRARLY++E ++ + S R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRARLYELECQKKQDAESEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI T ++L+ +L G++++II+ + A QA + + ++ Sbjct: 302 SEKIRTYNFPQGRVTDHRIKFTSHRLDEILNGHLEEIIDNCIAADQAAKLSNMND 356 >gi|330828702|ref|YP_004391654.1| peptide chain release factor 1 [Aeromonas veronii B565] gi|328803838|gb|AEB49037.1| Peptide chain release factor 1 [Aeromonas veronii B565] Length = 362 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 240/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ + E V D Y LT EYA + I+ Y Q + Sbjct: 1 MNPSLIRKLEGLIERHEEVQAMLGEPDVVSDQDRYRALTREYAQLEDIVHAFQRYRQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+++R++AQ E+ + + LE E+ +LLPKD DD +C LEIR Sbjct: 61 DLETTQMML--EEDDADLREMAQEELPLAKANLEALEQELQLMLLPKDPKDDNNCYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY R+A + W+V ++S +D + GGYKE++A I G V+ R+K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRFAERQGWRVSIVSCNDGEYGGYKEVIAKIDGERVYGRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINPSDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL ARL E +R + R+ Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+++HRINLTLY+L +L+G +D +I PL+ +QA + S Sbjct: 299 LVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLSEILEGDLDCVITPLVQEYQADQLASL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|327441448|dbj|BAK17813.1| protein chain release factor A [Solibacillus silvestris StLB046] Length = 358 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 157/355 (44%), Positives = 238/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V KL ++E + I ++ +Y K++ D Sbjct: 3 DRLQAVEDRYERLNELLSDPDIVSDSNKLREYSKEQSDIQEMVDVYRVYKSVKEQLADTR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ ++ + E + K++ ELE + LL+PKD +D K+ I+EIR GG Sbjct: 63 ELM-EIEKDAEMLEMMKEEFNDLNKQVPELEERLRILLIPKDPNDSKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY RYA + WKV+V+ ++ N GGYKE++ I+G+G +S+ K+E+G H Sbjct: 122 EANIFAGDLFRMYTRYAETQGWKVDVMEATPNPAGGYKEVILMINGQGAYSKFKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATVA LPE DV+I +DIR+DT +SG+GGQ VNTT SA Sbjct: 182 RVQRVPATESQGRIHTSTATVACLPEVHVEDVEIHEKDIRVDTFASSGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V+ E+SQ +NR +AMK+L AR+ D R+ E A RK +G+GDR Sbjct: 242 VRMTHLPTGVVVSMQDERSQIKNREKAMKILVARVADKHRQEAQAEIDATRKTAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ QA + + +E Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGKLDEIIDALILDEQATRLSNLNE 356 >gi|291617195|ref|YP_003519937.1| PrfA [Pantoea ananatis LMG 20103] gi|291152225|gb|ADD76809.1| PrfA [Pantoea ananatis LMG 20103] gi|327393650|dbj|BAK11072.1| peptide chain release factor 1 PrfA [Pantoea ananatis AJ13355] Length = 360 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 164/361 (45%), Positives = 246/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + D + L+ EYA ++ + + Q + Sbjct: 1 MKTSIVAKLEALQERHEEVEAMLGDAGVIADQDRFRALSREYAQLTDVTRCFRDWQQNQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+RD+AQ E+L ++ LE ++ LLLPKD DD++ C +E+R Sbjct: 61 DIETAKMLL----DDPEMRDMAQEELLEAREKSESLEQQLQLLLLPKDPDDERDCFVEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A + G G + R K Sbjct: 117 AGTGGDEAAIFAGDLFRMYSRYAESRRWRVEIVSANEGEHGGYKEVIARVMGEGAYGRFK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPELPEAELPEINPSDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRHEAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRIRTYNFPQGRVTDHRINLTIYRLDETMEGKLDSLIEPIVQEYQADQLAAL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|291520820|emb|CBK79113.1| bacterial peptide chain release factor 1 (bRF-1) [Coprococcus catus GD/7] Length = 357 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 251/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ R+ +I +++ V+ + KL +E + + P++ K + Y KQ +D Sbjct: 3 DRLDDILIRYQQIMEELNDPDVVNDQKHFRKLMKEQSDLQPLVEKYTEYKNTKQTIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E++++ + E+ + I ++E E+ LL+PKD D+K+ I+EIRAG GG Sbjct: 63 EML-EVEDDEEMKEMLKEELSEAKSNIAKIEQELKVLLIPKDPMDEKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +LFRMY +YA ++WK+E++ S+N GG+KE V +SG V+SRMKFESGVH Sbjct: 122 EAALFAAELFRMYSKYAESKRWKIEMMDVSENGIGGFKECVFMVSGDHVYSRMKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA E+DV+I + D+RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTVTVAIMPEAEEVDVEIDMNDVRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++L ++E ++ E +A RK Q+G+GDR Sbjct: 242 VRLTHNPTGIVIYSQTEKSQLQNKEKAFRLLRSKLLEIEIEKKHAEEAALRKNQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR T+HRI LTLY+L ++ G +D+II+ L+ A QA + + + Sbjct: 302 SEKIRTYNFPQGRCTEHRIKLTLYRLGDIMNGDLDEIIDSLIAADQAAKLANMED 356 >gi|109898878|ref|YP_662133.1| peptide chain release factor 1 [Pseudoalteromonas atlantica T6c] gi|119361579|sp|Q15SQ9|RF1_PSEA6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|109701159|gb|ABG41079.1| bacterial peptide chain release factor 1 (bRF-1) [Pseudoalteromonas atlantica T6c] Length = 362 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 251/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L RF E++ +S+ + D Y LT+EY+ + ++ + Y + Sbjct: 1 MKESVQRKLESLTERFEEVQALVSQPEIIADQDKYRALTKEYSQLEGVVKCFADYQGAQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + SD E+R++AQ E + ++ I + E+E+ LLLPKD +D+ +C +EIR Sbjct: 61 DFESAQEMMQE--SDPEMREMAQEEYKSSKQAIEQYEDELQILLLPKDPNDESNCFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA R+WKVEV++ ++ D GGYKE++A I G G + +K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEARRWKVEVVTMNEGDHGGYKEVIANIIGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TV V+PE E + +++ D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVPESEAIEVNKADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR +AM VL++RL +E ++ E ++ R+ Sbjct: 239 VNKTDSAIRITHVPSGIVVECQDERSQHKNRAKAMAVLQSRLNKLEEEKRQAEETSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR+TDHRINLTLY+L+ V+ G +D ++ P+ HQA ++ S Sbjct: 299 LVASGDRSERIRTYNFPQGRVTDHRINLTLYRLDDVVAGDLDAVLEPIRQEHQADLLASL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|182415309|ref|YP_001820375.1| peptide chain release factor 1 [Opitutus terrae PB90-1] gi|177842523|gb|ACB76775.1| peptide chain release factor 1 [Opitutus terrae PB90-1] Length = 383 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 159/352 (45%), Positives = 226/352 (64%), Gaps = 4/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + R E++ +M+E + + E + +++ YD+ +E + Sbjct: 14 DLAPFQRRLDELDAQMAEPTFYANARRAAEVSREQQKLQQLVADYQEYDRLGREAAEAAA 73 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D +D ++R+LAQ E+ +E+ L + ++P D D ++ ++EIRAGTGG E Sbjct: 74 LGKDPAADPDLRELAQAELPELERRRAALRQAVLLAMIPPDPTDSRNTVMEIRAGTGGDE 133 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF DLFRMY RYA + WK++ +SSS ++ GG+KE++ ISG V+ R+KFESGVHR Sbjct: 134 ASLFAADLFRMYSRYADGQGWKIQPMSSSMSERGGFKEVIFLISGTDVYKRLKFESGVHR 193 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA+GR+HTS TVAVLPEA E+DV I +++ I RASG GGQ VNTTDSAV Sbjct: 194 VQRVPVTEANGRIHTSTVTVAVLPEAEEVDVQIDPQELEITVTRASGPGGQGVNTTDSAV 253 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 +I H PTG++V + E+SQ +N+ +A+ VLR+RL + + +A R+ QIGSGDRS Sbjct: 254 QIVHKPTGLIVTCADERSQIKNKAKALTVLRSRLLQRREEEERAKYAATRRSQIGSGDRS 313 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ERIRTYNF Q R+TDHRI LTLY L VL+G ID II L A + + + Sbjct: 314 ERIRTYNFPQNRLTDHRIGLTLYNLPQVLEGGIDPIIAALHKADYEEKLAAL 365 >gi|302342174|ref|YP_003806703.1| peptide chain release factor 1 [Desulfarculus baarsii DSM 2075] gi|301638787|gb|ADK84109.1| peptide chain release factor 1 [Desulfarculus baarsii DSM 2075] Length = 361 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 180/362 (49%), Positives = 253/362 (69%), Gaps = 8/362 (2%) Query: 1 MVFLSHKQ--ICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQK 55 M + + +++ RF +E +++ V + ++K ++E+A +S ++ Y++ Sbjct: 1 MAMSPDLKARLEEVEARFNAVERELADPNIVANQENFMKRSKEHAELSQLVECFRSYNKY 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +QE + ++ D D E+ LA +EV E + +LE + LLLP+D D+K+ +LE Sbjct: 61 EQELEQNRLLMAD--DDEELAALAGVEVEQAETALVDLEQRMRLLLLPQDPRDEKNVVLE 118 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAGTGG EAALF +L RMY RYA L++WK E+LS + GG+KE++A I+GRG +S+ Sbjct: 119 IRAGTGGDEAALFAAELLRMYLRYAELKRWKTEILSQHPTNAGGFKEVIALITGRGAYSQ 178 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +K+ESG HRVQRVPATE+ GRVHTSA TVAVLPEA E++VDI E++RID R+SG GGQ Sbjct: 179 LKYESGAHRVQRVPATESQGRVHTSAVTVAVLPEADEVEVDIKPEELRIDYFRSSGPGGQ 238 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVRITH+PTG++V EKSQH+N+ +A+KVL ARL + + +ANR+ Sbjct: 239 HVNTTDSAVRITHLPTGLVVSCQDEKSQHKNKAKALKVLAARLLEKMEQEQQAALAANRR 298 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRSERIRTYNF QGR+TDHRI LT+YKLE VL G ++ II L+ QA+ + S Sbjct: 299 SQVGSGDRSERIRTYNFPQGRVTDHRIGLTIYKLEEVLVGELELIIPHLVAYFQAEALKS 358 Query: 355 AS 356 ++ Sbjct: 359 SA 360 >gi|158520489|ref|YP_001528359.1| peptide chain release factor 1 [Desulfococcus oleovorans Hxd3] gi|238686878|sp|A8ZTL8|RF1_DESOH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|158509315|gb|ABW66282.1| peptide chain release factor 1 [Desulfococcus oleovorans Hxd3] Length = 356 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 174/353 (49%), Positives = 239/353 (67%), Gaps = 6/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D++ RF E+E M++ V+ Y K + E+A ++ I+ Y E + Sbjct: 3 DRLQDVERRFGELEGLMADPSIVNDREAYQKHSREHAELADIVDAYRRYKAVSDEIEKSR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D EIR+LA+ E+ ++ E L+ E+ LL PKD +D+K+ ++EIRAGTGG Sbjct: 63 DLLED--RDPEIRELAKEEISRLKDERERLDGELQNLLTPKDPNDNKNVLVEIRAGTGGE 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLFRMY RYA WK E++SSS GG+KE++ + G+G +S +KFESG+H Sbjct: 121 EASLFAHDLFRMYWRYAETMGWKTEIMSSSVTGSGGFKEVIFMVYGKGAYSHLKFESGIH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTSA TVAVL EA E+++ I +I+ D R+SG GGQ VNTTDSA Sbjct: 181 RVQRVPETEAQGRIHTSAVTVAVLAEAEEVELHIDPSEIKTDVFRSSGPGGQSVNTTDSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQ +N+ +AMKVLRARL D + + + NRK Q+GSGDR Sbjct: 241 VRLTHLPTGVVVICQDEKSQLKNKNKAMKVLRARLLDRMIQDQNEKIAQNRKDQVGSGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 S RIRTYNF QGR+TDHR +TLYKLE VLQG + +++N L T QA+ + A Sbjct: 301 SGRIRTYNFPQGRVTDHRAGITLYKLESVLQGDLSELVNGLATYFQAERLKQA 353 >gi|73667064|ref|YP_303080.1| peptide chain release factor 1 [Ehrlichia canis str. Jake] gi|119361538|sp|Q3YS23|RF1_EHRCJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|72394205|gb|AAZ68482.1| bacterial peptide chain release factor 1 (bRF-1) [Ehrlichia canis str. Jake] Length = 359 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 183/357 (51%), Positives = 258/357 (72%), Gaps = 4/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +L +F +++ + + SVD+++ ++EY+ + P+IS I Y+ +++ Sbjct: 1 MSFDSNLEELYQKFCKLKSILEDPSQLSVDSFVAASKEYSELLPVISVIDQYNSLQKDIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL +I + +D E++ LA+ E +K++ +++N++ L+PKD DD ++ ILEIRAGT Sbjct: 61 DLEELINNPETDHELKSLAKEEFYERQKQLPKIKNKLKLSLIPKDRDDARNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WK E ++SS GG+KE+ ISG VF+R+KFES Sbjct: 121 GGEEAALFVTDLYRMYTKYAEQKNWKFEQINSSSTGIGGHKEVSLCISGSNVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+V EKSQH+N+ +A+KVLRARLY++E+++ +E S RK QIGS Sbjct: 241 DSAVRITHIPSGIVVIQQDEKSQHKNKNKALKVLRARLYNLEKQKRDSEISQMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF Q RITDHRINLTLY+LE ++ +G +D+ I+ L+ +A + + Sbjct: 301 GDRSERIRTYNFPQSRITDHRINLTLYRLEDIMKEGNLDEFIDALIAEDEANKLKNL 357 >gi|296282001|ref|ZP_06859999.1| peptide chain release factor 1 [Citromicrobium bathyomarinum JL354] Length = 355 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 178/357 (49%), Positives = 252/357 (70%), Gaps = 7/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + NRFAEIE RM+ + +++ + +YA + P+ ++E L Sbjct: 3 IPPERLDQIANRFAEIEARMASGQLEGEEFVQASRDYAELEPVAKLALELKAAREEVAGL 62 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+RD+A+ E+ A+ + I ELE ++ +LP+D+ D K +LEIRAGTGG Sbjct: 63 DEMLA----DPEMRDMAEEELEALNQRIPELEQQLAVAMLPRDSADAKPAMLEIRAGTGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL+RMYER+A + WKVE +S S ++ GG+KEIVA ++G GVF+++KFESGV Sbjct: 119 DEAALFAGDLYRMYERFAGEQGWKVEPVSMSASEVGGFKEIVAHVTGTGVFAKLKFESGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV + D++IDT RASG+GGQHVNTTDS Sbjct: 179 HRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQVDPGDLKIDTYRASGAGGQHVNTTDS 238 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+PTG++V +SQH+NR +AM+VLRARLY+ +R + RK +GSGD Sbjct: 239 AIRITHLPTGLVVTCQDGRSQHKNREQAMQVLRARLYEQQRDAAQGAEAEARKAMVGSGD 298 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRI LTL KL ++ G + ++++ L+ +AK + + +E Sbjct: 299 RSERIRTYNFPQGRVTDHRIGLTLQKLPQIIAGPGLGELVDALIAEDEAKRLAAMNE 355 >gi|282857117|ref|ZP_06266363.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455] gi|282585052|gb|EFB90374.1| peptide chain release factor 1 [Pyramidobacter piscolens W5455] Length = 358 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 172/357 (48%), Positives = 247/357 (69%), Gaps = 6/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ +L+ +AE+E +M++ + L +++ + ++ Y Q + E Sbjct: 1 MNLEPKLRELEAIYAELEKKMADPAVVSDIKEMQNLGRKHSELEEVVGDYRRYRQVRDEI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++G D E+ +LA++E+ E + ++E ++ LLPKD +D+K I+EIRAG Sbjct: 61 AEAKELVG--GGDHELAELAKMELEEKEPLLGKIEEQLRVALLPKDPNDEKDVIMEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF DLFRMY RYA WK+E++ ++ + GGYKEIV I GRGV+S++K+E Sbjct: 119 TGGDEASLFAADLFRMYSRYAEREGWKLEIVDENETEVGGYKEIVLQIHGRGVYSQLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVPATEA GR+HTSAATV V+P A +ID++I ED++IDT R+SG+GGQHVN Sbjct: 179 SGVHRVQRVPATEAGGRIHTSAATVVVMPVADDIDIEIRPEDLKIDTYRSSGAGGQHVNM 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ +NR +A++VL+ RLYD E ++ + SA RK IG Sbjct: 239 TDSAVRITHLPTGLVVTCQDERSQIKNRAKALQVLKTRLYDAEVEKQRSAESAERKGMIG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYN+ Q R+TDHRI LTLYKLEY++ G + ++I L+ A QA + + Sbjct: 299 SGDRSERIRTYNYPQNRVTDHRIGLTLYKLEYMMDGDLYEMIKALVMAEQAAKLEAL 355 >gi|221632126|ref|YP_002521347.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159] gi|221155596|gb|ACM04723.1| peptide chain release factor 1 [Thermomicrobium roseum DSM 5159] Length = 363 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 234/354 (66%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +L+ RF E+E ++++ + L E A + I++ ++ Sbjct: 10 DKLAELEQRFDEVERQLADPDVATDPQRVAQLARERAELEEIVALYRQLKDIDRQVAQAE 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D ++ +LA E+ + + + E+ L+P+D +D+K I+EIRAGTGG Sbjct: 70 ELL--EAEDPDLVELAAEEIDRLREYRETIYQELRRRLVPRDPNDEKDVIVEIRAGTGGE 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA + WKVEVLSSS + GG+KEI+ + G+G +S K ESGVH Sbjct: 128 EAALFAADLFRMYTRYAERQGWKVEVLSSSPTELGGFKEIIFEVRGKGAYSHFKHESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA E++V I +D+RI+ R+SG GGQ VNTTDSA Sbjct: 188 RVQRVPITESSGRIHTSTATVAVLPEADEVEVHIDEDDLRIEVFRSSGHGGQSVNTTDSA 247 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NRL+AM VLRARLY+++R+++ ER+ R+ Q+G+G+R Sbjct: 248 VRITHLPTGIVVSCQDERSQLKNRLKAMAVLRARLYELQRRKLEEERTGLRRQQVGTGER 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +E+IRTYNF Q R+TDHR+ LT+ L VL G ID I L A+ + +A Sbjct: 308 AEKIRTYNFPQDRVTDHRLKLTVNNLPAVLDGEIDIFIQELQALEMAERLRAAG 361 >gi|153809900|ref|ZP_01962568.1| hypothetical protein RUMOBE_00281 [Ruminococcus obeum ATCC 29174] gi|149834078|gb|EDM89158.1| hypothetical protein RUMOBE_00281 [Ruminococcus obeum ATCC 29174] Length = 359 Score = 280 bits (715), Expect = 3e-73, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 245/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ + E D + KL +E + + PI+ Y K+ QD Sbjct: 3 DKLEDLLVRFEEVLNELGEPGVTDNQERFQKLMKEQSELQPIVDAYKEYKDNKETIQDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + E+R++ + E+ +K + ELE E+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 SMLEEEKD-EEMREMLKEELSDAKKRVEELEKELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA R+WK E++S ++N GG+KE+ I G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESRRWKTEMMSLNENGIGGFKEVTFMIQGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID + + D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLY++E + + + R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQHDAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL++L+ VL G +D+I++ L+ A QA + S +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHRLDAVLGGDLDEILDSLIAADQAAKLSSLNE 356 >gi|255993956|ref|ZP_05427091.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989] gi|255993624|gb|EEU03713.1| peptide chain release factor 1 [Eubacterium saphenum ATCC 49989] Length = 357 Score = 279 bits (714), Expect = 3e-73, Method: Composition-based stats. Identities = 173/357 (48%), Positives = 242/357 (67%), Gaps = 4/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + ++ E+E +S+ + + K +E + + PI+ S + + KQE D Sbjct: 1 MLDKLDFIVEKYKELEAAVSKPEIIGNQPLWQKYIKEMSDMEPIVKTYSSFKKHKQELSD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E++DLA++E+ +E EI + E ++ LL+PKD D+K+ ILEIRAGTG Sbjct: 61 AKELLAGAGGDEEMKDLAKLEISGLEDEINKEEEQLKILLIPKDPRDEKNVILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL RMY YA + WK E++ ++ G KE V I G+G FSR+K+ESG Sbjct: 121 GEEAALFGSDLLRMYSMYADSKNWKTEIIELNETGLNGIKEAVMLIKGKGAFSRLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGRVHTSAATVAVLPE +++VD+ D+R+D R+SG+GGQ VNTTD Sbjct: 181 VHRVQRVPTTESSGRVHTSAATVAVLPEMDDVEVDLNPNDVRVDVYRSSGNGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTGI+V EKSQ +N+ +A KVL++RLY+++ + + S RK Q+GSG Sbjct: 241 SAVRLTHEPTGIVVTCQDEKSQIKNKDKAFKVLKSRLYNLKMEEQNKQLSDERKSQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR++DHRI LT+YKL+ + G ID++I L+TA QA + E Sbjct: 301 DRSERIRTYNFPQGRVSDHRIGLTIYKLDNFMNGDIDEVIEGLITADQAAKMSKFGE 357 >gi|156933676|ref|YP_001437592.1| peptide chain release factor 1 [Cronobacter sakazakii ATCC BAA-894] gi|166223556|sp|A7MKC1|RF1_ENTS8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|156531930|gb|ABU76756.1| hypothetical protein ESA_01498 [Cronobacter sakazakii ATCC BAA-894] Length = 360 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + + L+ EYA +S + + Q +++ + Sbjct: 8 KLEALQERHEEVQALLGDAGTLADQERFRALSREYAQLSDVSRCFLEWRQVQEDMETARL 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD E+RD+AQ E+L + + LE E+ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----SDPEMRDMAQDELLEAKAKSEALEQELQLLLLPKDPDDERNAFVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSASEGEHGGYKEVIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALAVLGARIHAAEVAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + +E Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIEPIIQEHQADQLAALAE 358 >gi|46908715|ref|YP_015104.1| peptide chain release factor 1 [Listeria monocytogenes serotype 4b str. F2365] gi|47093870|ref|ZP_00231612.1| peptide chain release factor 1 [Listeria monocytogenes str. 4b H7858] gi|217963353|ref|YP_002349031.1| peptide chain release factor 1 [Listeria monocytogenes HCC23] gi|226225091|ref|YP_002759198.1| peptide chain release factor 1 [Listeria monocytogenes Clip81459] gi|254825334|ref|ZP_05230335.1| peptide chain release factor 1 [Listeria monocytogenes FSL J1-194] gi|254828119|ref|ZP_05232806.1| peptide chain release factor 1 [Listeria monocytogenes FSL N3-165] gi|254831034|ref|ZP_05235689.1| peptide chain release factor 1 [Listeria monocytogenes 10403S] gi|254853928|ref|ZP_05243276.1| peptide chain release factor 1 [Listeria monocytogenes FSL R2-503] gi|254900318|ref|ZP_05260242.1| peptide chain release factor 1 [Listeria monocytogenes J0161] gi|254913443|ref|ZP_05263455.1| peptide chain release factor 1 [Listeria monocytogenes J2818] gi|254932215|ref|ZP_05265574.1| peptide chain release factor 1 [Listeria monocytogenes HPB2262] gi|254937824|ref|ZP_05269521.1| peptide chain release factor 1 [Listeria monocytogenes F6900] gi|254993429|ref|ZP_05275619.1| peptide chain release factor 1 [Listeria monocytogenes FSL J2-064] gi|255026493|ref|ZP_05298479.1| peptide chain release factor 1 [Listeria monocytogenes FSL J2-003] gi|255519761|ref|ZP_05386998.1| peptide chain release factor 1 [Listeria monocytogenes FSL J1-175] gi|284802981|ref|YP_003414846.1| peptide chain release factor 1 [Listeria monocytogenes 08-5578] gi|284996122|ref|YP_003417890.1| peptide chain release factor 1 [Listeria monocytogenes 08-5923] gi|290892706|ref|ZP_06555698.1| peptide chain release factor 1 [Listeria monocytogenes FSL J2-071] gi|300764957|ref|ZP_07074945.1| peptide chain release factor 1 [Listeria monocytogenes FSL N1-017] gi|61214637|sp|Q71WN5|RF1_LISMF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790886|sp|B8DBG6|RF1_LISMH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|259585225|sp|C1KYW0|RF1_LISMC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46881987|gb|AAT05281.1| peptide chain release factor 1 [Listeria monocytogenes serotype 4b str. F2365] gi|47017744|gb|EAL08535.1| peptide chain release factor 1 [Listeria monocytogenes str. 4b H7858] gi|217332623|gb|ACK38417.1| peptide chain release factor 1 [Listeria monocytogenes HCC23] gi|225877553|emb|CAS06267.1| Putative peptide chain release factor 1 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258600504|gb|EEW13829.1| peptide chain release factor 1 [Listeria monocytogenes FSL N3-165] gi|258607316|gb|EEW19924.1| peptide chain release factor 1 [Listeria monocytogenes FSL R2-503] gi|258610428|gb|EEW23036.1| peptide chain release factor 1 [Listeria monocytogenes F6900] gi|284058543|gb|ADB69484.1| peptide chain release factor 1 [Listeria monocytogenes 08-5578] gi|284061589|gb|ADB72528.1| peptide chain release factor 1 [Listeria monocytogenes 08-5923] gi|290557766|gb|EFD91288.1| peptide chain release factor 1 [Listeria monocytogenes FSL J2-071] gi|293583770|gb|EFF95802.1| peptide chain release factor 1 [Listeria monocytogenes HPB2262] gi|293591450|gb|EFF99784.1| peptide chain release factor 1 [Listeria monocytogenes J2818] gi|293594577|gb|EFG02338.1| peptide chain release factor 1 [Listeria monocytogenes FSL J1-194] gi|300514257|gb|EFK41316.1| peptide chain release factor 1 [Listeria monocytogenes FSL N1-017] gi|307572070|emb|CAR85249.1| peptide chain release factor 1 [Listeria monocytogenes L99] gi|332312973|gb|EGJ26068.1| Peptide chain release factor 1 [Listeria monocytogenes str. Scott A] Length = 358 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 242/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNEQINETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE +LE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKADLEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|332829242|gb|EGK01896.1| peptide chain release factor 1 [Dysgonomonas gadei ATCC BAA-286] Length = 361 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KL +EY + I + Y Q ++ Sbjct: 8 EKLDTLVMRFEEIGKLITDPSVIADMKRYVKLNKEYRDLEKISIARNEYKQLLTNVEEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D +D+E+R++A+ E+ + ELE EI LL+P D +D K+ I+EIR GTGG Sbjct: 68 NIL-DSENDAELREMAREELDTANVRLPELEEEIKLLLVPADPEDSKNAIVEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL+RMY +Y L+ W+ E+ S ++ GGYKE++ T++G GV+ +K+ESGVH Sbjct: 127 EAAIFAGDLYRMYIKYCELKGWRTEITSLTEGTSGGYKEVIFTVTGEGVYGILKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E+DV+I DI + T R+SG+GGQ+VN ++ Sbjct: 187 RVQRVPATETQGRVHTSAATVAVLPEAEEVDVEINPADIEMQTARSSGAGGQNVNKVETK 246 Query: 244 VRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V++TH P+G ++V +SQ NR AM++LR +LYD+E + E ++ RK + +GDR Sbjct: 247 VQLTHKPSGLVVVCQQARSQLANRELAMQMLRTKLYDIELSKYQAEIASKRKTMVSTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S +IRTYN+ QGR+TDHRINLTLY L V+ G I II+ L+ A + + + Sbjct: 307 SAKIRTYNYPQGRVTDHRINLTLYNLSGVMDGEIQPIIDQLIIAENTERLKESE 360 >gi|237737785|ref|ZP_04568266.1| peptide chain release factor 1 [Fusobacterium mortiferum ATCC 9817] gi|229419665|gb|EEO34712.1| peptide chain release factor 1 [Fusobacterium mortiferum ATCC 9817] Length = 358 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 247/355 (69%), Gaps = 6/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ RF E+ + + K+ + A I+P++ K Y ++ Q + Sbjct: 4 KLEEVVRRFDELNEMLGSPEILSDPKKMMECNKALADITPLVEKYKEYKTLSEDLQFIKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 I + D ++R++ E +E+++ E E E+ LLLPKD +DDK+ I+EIR G GG E Sbjct: 64 NIR-NEKDHDMREMMNEEQKELEEKLPEYEKELKILLLPKDENDDKNVIVEIRGGAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA RKWKVE++ + GG KE V +I+G G +SR+KFESGVHR Sbjct: 123 AALFAGDLFRMYNRYAERRKWKVEIIEKQEIGIGGIKEAVFSINGLGAYSRLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE++GRVHTS ATVAVLPE + +V I +D++IDT R+ G+GGQHVN TDSA Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPKDLKIDTYRSGGAGGQHVNMTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NR +AMK L ++LY++E ++ ++ + RKLQ+G+GDR Sbjct: 243 VRITHLPTGIVVQCQDERSQLKNREKAMKHLVSKLYEMECEKQRSQVESERKLQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGRITDHRI T+Y+L+ L G ID++I+ L+T +QA+M+ SASE Sbjct: 303 SEKIRTYNFPQGRITDHRIKFTVYQLDAFLDGDIDEMIDALITFNQAEMLASASE 357 >gi|157825817|ref|YP_001493537.1| peptide chain release factor 1 [Rickettsia akari str. Hartford] gi|166223595|sp|A8GNQ4|RF1_RICAH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157799775|gb|ABV75029.1| peptide chain release factor 1 [Rickettsia akari str. Hartford] Length = 355 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 178/354 (50%), Positives = 247/354 (69%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + ++ KI Y++ K E ++ Sbjct: 1 MSFSDNLAKILDKYDNLGKKLSSGIMGDEFVKASKEYAELEDVVVKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ + + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLELGFDNATLAMIEDEIHILENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER+ ER+ +R+ QIGSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRNKEQERADSRRGQIGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ I L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFIEALIAEDEAKKLSE 354 >gi|260584605|ref|ZP_05852351.1| peptide chain release factor 1 [Granulicatella elegans ATCC 700633] gi|260157628|gb|EEW92698.1| peptide chain release factor 1 [Granulicatella elegans ATCC 700633] Length = 359 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ R+ E+ +S+ + +++LT+E + + P + Y Q +E D Sbjct: 3 DQLDSFIIRYDELSELLSDPDVISDTKRFMELTKEESNLRPKVETFKRYQQVVEEIGDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ DSE+ ++A+ E+ +++KE ELE +I +LLLP+D +D K+ I+EIR GG Sbjct: 63 EMLGE-GLDSEMAEMAKEELASLKKEKVELEEKIKFLLLPEDPNDGKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY++YA + W+VEV+ ++ GGYKE++ I+G VFS++K+ESG H Sbjct: 122 EAALFAGDLLSMYQKYAESQGWRVEVMDANVTGIGGYKEVILMITGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GRVHTS ATV V+PEA E+++++ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRVHTSTATVVVMPEAEEVEIELEDKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD + +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDKISQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ VL G ID+I++ L+ + + + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTLQKLDQVLAGKIDEIVDALILYDHTEKLEQLN 355 >gi|260598215|ref|YP_003210786.1| peptide chain release factor 1 [Cronobacter turicensis z3032] gi|260217392|emb|CBA31449.1| Peptide chain release factor 1 [Cronobacter turicensis z3032] Length = 360 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + + L+ EYA +S + + Q +++ + Sbjct: 8 KLEALQERHEEVQALLGDAGTLADQERFRALSREYAQLSDVSRCFLEWRQVQEDMETARL 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD E+RD+AQ E+L + + LE E+ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----SDPEMRDMAQDELLEAKAKGEALEQELQLLLLPKDPDDERNAYVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSASEGEHGGYKEVIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALAVLGARIHAAEAAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + +E Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDALIEPIIQEHQADQLAALAE 358 >gi|16804581|ref|NP_466066.1| peptide chain release factor 1 [Listeria monocytogenes EGD-e] gi|224500713|ref|ZP_03669062.1| peptide chain release factor 1 [Listeria monocytogenes Finland 1988] gi|224503217|ref|ZP_03671524.1| peptide chain release factor 1 [Listeria monocytogenes FSL R2-561] gi|255029752|ref|ZP_05301703.1| peptide chain release factor 1 [Listeria monocytogenes LO28] gi|20139329|sp|Q8Y4A8|RF1_LISMO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|16412031|emb|CAD00621.1| prf1 [Listeria monocytogenes EGD-e] Length = 358 Score = 279 bits (714), Expect = 4e-73, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 242/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNEQINETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE +LE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKTDLEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|293375558|ref|ZP_06621832.1| peptide chain release factor 1 [Turicibacter sanguinis PC909] gi|325836776|ref|ZP_08166243.1| peptide chain release factor 1 [Turicibacter sp. HGF1] gi|292645775|gb|EFF63811.1| peptide chain release factor 1 [Turicibacter sanguinis PC909] gi|325491154|gb|EGC93443.1| peptide chain release factor 1 [Turicibacter sp. HGF1] Length = 354 Score = 279 bits (713), Expect = 4e-73, Method: Composition-based stats. Identities = 148/354 (41%), Positives = 230/354 (64%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + R+ +I M++ V KL ++E + ++ + Y +DL Sbjct: 3 ERLEAILERYEKINEMMADPAIVTDIKKLTELSKEQRGLEETVNVYTEYKNIASSIEDLK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D SD EI ++A++E+ ++ + ELE ++ LL+PKD +D+K+ I+EIR GG Sbjct: 63 EMAKD--SDPEISEMAEMELEELKPRLPELEQQLEILLIPKDPNDEKNVIVEIRGAAGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F DL+RMY +YA L+ WK++V++ ++ GG ++ ISG VFS MK+ESG H Sbjct: 121 EANIFASDLYRMYTKYAELKGWKIQVMNVDYSESGGMSQVEFMISGESVFSHMKYESGAH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATV V+PEA ++D+++ + DIR+DT +SG GGQ VNTT SA Sbjct: 181 RVQRVPATESQGRIHTSTATVLVMPEAEDVDIEVSMNDIRVDTFCSSGPGGQSVNTTKSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V KSQH+N+ A+KVL+AR+YD + R+ +IG+G+R Sbjct: 241 VRLTHVPTGIVVSCQDGKSQHENKANALKVLKARIYDSILQERLEAEGEERRSKIGTGER 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ Q R+TDHRI T+ +L+ V++G ++ +I L+T Q + + Sbjct: 301 SEKIRTYNYPQNRVTDHRIGFTIQQLDRVMEGKLEPVIEALITEEQKRKLAHQE 354 >gi|320160374|ref|YP_004173598.1| peptide chain release factor 1 [Anaerolinea thermophila UNI-1] gi|319994227|dbj|BAJ62998.1| peptide chain release factor 1 [Anaerolinea thermophila UNI-1] Length = 357 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 161/355 (45%), Positives = 243/355 (68%), Gaps = 4/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSES-PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +++RF E+ + E+ I+L++E A + PI+ K Y ++ ++ Sbjct: 1 MLEKLIAIESRFEELNRLLEENAGDYQKVIELSKERADLEPIVEKAQEYRTVLKQIEEAR 60 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ + D E+R+LA+ ++ +E LE E+ LL+PKD D+++ I+EIRAGTGG Sbjct: 61 TLL--ESGDEELRELAEADLETLEPRQEVLEKELKTLLIPKDPRDERNVIVEIRAGTGGE 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA R W VE++S ++ GGYKEI+ + G+G +SR+K+ESGVH Sbjct: 119 EAALFAGDLFRMYSRYAEKRGWSVEIISQNETGIGGYKEIIFMVKGKGAYSRLKYESGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+SGR+HTS ATVAVL E E+D++IP D+ I+ R++G+GGQ+V +A Sbjct: 179 RVQRIPVTESSGRIHTSTATVAVLAEVDEVDINIPDSDLEIEVYRSAGAGGQNVQKNSTA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ QN+LRAM +LRA+LY++E ++ E A R+ Q+G+G+R Sbjct: 239 VRITHLPTGIVVACQDERSQLQNKLRAMSILRAKLYEIEEQKRQQELDATRRSQVGTGER 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +E+IRTYNF Q R+TDHRI ++ Y L VL G ID I+ L + + + + ++ Sbjct: 299 AEKIRTYNFPQSRVTDHRIGISSYNLPAVLDGEIDLFIDELALRSETERLATGAD 353 >gi|82703754|ref|YP_413320.1| peptide chain release factor 1 [Nitrosospira multiformis ATCC 25196] gi|119361568|sp|Q2Y5P3|RF1_NITMU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|82411819|gb|ABB75928.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrosospira multiformis ATCC 25196] Length = 358 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +S ++D Y KLT E A I+P++ + Y Q +Q Sbjct: 1 MNKSMTAKLTQLSVRLEELNRLLSSESITVNLDQYRKLTRERAEIAPVVDLYNAYLQSEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + E+R+ A E+ ++ + E+ LLPKD +D+++ LEIR Sbjct: 61 DIHTAQEMAAEA----EMREFADAEIRDAKERLVRYGAELQKQLLPKDPNDERNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DLFRMY R+A ++W+VE++S S +D GGYKEI+A ISG G +S++K Sbjct: 117 AGTGGDESALFAADLFRMYARFAERQRWQVEIISQSPSDVGGYKEIIAKISGEGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PEA EI+ ++RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEADEIEDVALNPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+V +SQH+N+ +AM VL AR+ D + + ++++A RK Sbjct: 237 INKTDSAVRITHLPTGIVVECQDGRSQHKNKAQAMSVLAARIRDKQMQEQQSKQAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+G+RS RIRTYNF QGRITDHRINLTLYK+E ++ G ++++ + LL HQA+ + + Sbjct: 297 LVGTGNRSGRIRTYNFPQGRITDHRINLTLYKIEQIMDGDLNELCSALLAEHQAEQLAAM 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|326796200|ref|YP_004314020.1| peptide chain release factor 1 [Marinomonas mediterranea MMB-1] gi|326546964|gb|ADZ92184.1| Peptide chain release factor 1 [Marinomonas mediterranea MMB-1] Length = 362 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 168/361 (46%), Positives = 246/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E+ +SE+ + + ++EY+ + P++ Y + Sbjct: 1 MKESIKFKLESLAERYEELAALLSEADVIMDQNLFRNYSKEYSELEPVVKCFEEYQVVLE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D SD +I+++ Q E+ + ++ L ++ LLLPKD +D K+ LE+R Sbjct: 61 NLEEAQLMLTD--SDPDIKEMGQEELKSGNEQKETLLLDLQKLLLPKDPNDSKNVFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLFRMY RYA ++WKVE++S+++ + GGYKEI+A I G G +S++K Sbjct: 119 AGTGGDEASIFSGDLFRMYSRYAETQRWKVEIVSANEGEHGGYKEIIARIVGEGAYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E D+DI D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPATESQGRIHTSACTVAVMPEMDEVSDIDINKADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RI H+PTG++V E+SQH+NR +AM +L +RL E + A E+S R+ Sbjct: 239 VNKTDSAIRIVHLPTGVVVECQDERSQHKNRAKAMALLASRLKAAEEDKAAAEQSETRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYN+ QGR+TDHRINLTLYKL+ ++ G +D ++ PL+ HQA + + Sbjct: 299 LVGTGDRSDRIRTYNYPQGRVTDHRINLTLYKLDEIVAGDLDVLVGPLVNEHQADQLATL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|291550093|emb|CBL26355.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus torques L2-14] Length = 356 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 251/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E + + KL +E + ++PI+ Y + KQ ++ Sbjct: 3 DRLEDLVIRYQEVMGELQEPDVANDPERFRKLMKEQSDLAPIVEAYQEYKKCKQNVEESL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD E+R+LA+ E+ + I ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 -MILEEESDEEMRELAKEELNESKARIEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WK E++S ++N GG+KE V I+G+G +SRMK+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYADSRRWKTEMISLNENGIGGFKECVFMITGQGAYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ +A R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKKQASEAAERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D++I+ L+ A Q + E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSILNGDLDEVIDSLIAADQTAKLAKMEE 356 >gi|317499018|ref|ZP_07957299.1| peptide chain release factor 1 [Lachnospiraceae bacterium 5_1_63FAA] gi|291560728|emb|CBL39528.1| bacterial peptide chain release factor 1 (bRF-1) [butyrate-producing bacterium SSC/2] gi|316893668|gb|EFV15869.1| peptide chain release factor 1 [Lachnospiraceae bacterium 5_1_63FAA] Length = 357 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 247/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L +R + +++ + + L +E ++PI+ K Y +KQ +D Sbjct: 3 DKLEGLVDRLDTVLQELNDPDVAGNQNRFRDLMKEQNELTPIVEKYKEYKAEKQNIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+++LA+ E+ + + LE E+ LL+PKD DDK+ I+E+RAG GG Sbjct: 63 -MLLEEESDEEMKELAKEELNESKANVERLEEELKILLIPKDPMDDKNIIVEMRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LFV D+ RMY YA ++WKV LS +++ GG+KE+V +SG+G +SR K+ESGVH Sbjct: 122 EAGLFVADVARMYRNYAESKRWKVNTLSFNESGIGGFKELVFMVSGQGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVA++PE +++V+I + D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSTITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +A+KVLR+RLY++E+++ +E +A RK QIG+GDR Sbjct: 242 VRLTHIPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELEQQKAHDEEAAKRKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ QGR+TDHRI LTL+KL+ ++ G +D++I+ L A QA + + E Sbjct: 302 SEKIRTYNYPQGRVTDHRIKLTLHKLDSIMNGDLDELIDSLTAADQAAKLSNMEE 356 >gi|28210063|ref|NP_781007.1| peptide chain release factor 1 [Clostridium tetani E88] gi|32171526|sp|Q898Y5|RF1_CLOTE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|28202498|gb|AAO34944.1| bacterial peptide chain release factor 1 [Clostridium tetani E88] Length = 355 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 251/356 (70%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++N++ E+ +++S+ + + KL +E++ + I++ Y + Q +D Sbjct: 1 MLDRLNFIENKYEELSIKISDPTVMQDQKEWQKLCKEHSDMETIVTTYKEYKEVLQSIED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + + E+RD+ Q ++ +E+ ++ELE E+ LL+PKD +D+K+ +EIRAG G Sbjct: 61 NKEMLKE-DIEQELRDMVQEDIKELEQRVQELEQELKMLLVPKDPNDEKNVFIEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY RYA WK E +S ++ D GG+KEIV + G+G +SR+K+ESG Sbjct: 120 GDEAALFAANLFRMYTRYAERHNWKTEAVSVNETDIGGFKEIVFMVRGKGAYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTS ATVAVLPE ++DV+I D+R+D RASG GGQ VNTTD Sbjct: 180 VHRVQRVPDTESSGRIHTSTATVAVLPEVEDVDVEINQNDLRVDVYRASGHGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V EKSQ +N+ +AMKVL++RLYD+ + + +RK Q+G+G Sbjct: 240 SAVRITHLPSGLVVTCQDEKSQLKNKEKAMKVLKSRLYDMLESERSASIAEDRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ QGR+TDHRI LTLYKLE L G I+++I+ L+T Q++ + S Sbjct: 300 DRSERIRTYNYPQGRVTDHRIGLTLYKLESFLDGDIEEMIDGLITVEQSERMKDIS 355 >gi|313158318|gb|EFR57720.1| peptide chain release factor 1 [Alistipes sp. HGB5] Length = 361 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 230/353 (65%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ LK ++ E ++++ + +++L +EY + PII Y + Sbjct: 9 RLDGLKLKYEETGQKLTDPEVIADVKQFVQLNKEYKELEPIIETSERYRTALANLAEAKD 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ D E+R++A+ E+ +E I ++E +I LL+PKD D K+ I+EIR GTGG E Sbjct: 69 ILA-NDKDEEMREMARGEITELEPAIEQMEEQIKLLLIPKDPQDSKNAIMEIRGGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDL RMY +Y + W+ E+ S SD GGYKE+V ++G+ V+ +K+ESGVHR Sbjct: 128 AAIFAGDLLRMYTKYIESKGWRYEMTSFSDGAAGGYKEVVLKVTGQNVYGTLKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTSAA+VAVLPEA E DV+I + DIR D ASG GGQ VNTT SA+ Sbjct: 188 VQRVPQTETQGRVHTSAASVAVLPEAEEFDVEISMNDIRKDIFCASGPGGQSVNTTYSAI 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +KSQ +N +A + LR R++++E + +E ++ RK + +GDRS Sbjct: 248 RLTHIPTGIVVQCQDQKSQLKNFDKAFEELRTRVFNLEYSKYLDEIASKRKTMVSTGDRS 307 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGRITDHRIN T+Y L + G I D+I+ L+ A A+ + + Sbjct: 308 AKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQDVIDHLIVAENAERLKESE 360 >gi|226323866|ref|ZP_03799384.1| hypothetical protein COPCOM_01641 [Coprococcus comes ATCC 27758] gi|225207415|gb|EEG89769.1| hypothetical protein COPCOM_01641 [Coprococcus comes ATCC 27758] Length = 358 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 254/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ EI + E V+ + KL +E ++PI+ Y KQ +D Sbjct: 3 DKLEDLLIRYEEIMGELQEPDVVNDQSRFRKLMKEQNDLTPIVEAYKEYKNCKQNIED-S 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+++LA+ E+ +K + ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 62 LSLLEEESDEEMKELAKEELSESKKRVEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WK E++S ++N GG+KE+V I+G+G +SRMK+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYADSRRWKTEMISLNENGIGGFKEVVFMITGQGAYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY++E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYELELEKQHSAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ ++ G +D++I+ L+ A QA + S +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSIMNGDLDEVIDSLIAADQAAKLASMNE 356 >gi|323345650|ref|ZP_08085873.1| peptide chain release factor RF1 [Prevotella oralis ATCC 33269] gi|323093764|gb|EFZ36342.1| peptide chain release factor RF1 [Prevotella oralis ATCC 33269] Length = 370 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 143/360 (39%), Positives = 221/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++R+ E+ +++ ++ KLT+EY + I+ Y Q+ Sbjct: 9 EKLDGLESRYEEVSTLITDPDVINDQQRYVKLTKEYKDLGDIMEARRRYIACLNAIQEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD++++++A+ E+ E +LE EI L+PKD +D+K+ +EIRAGTGG Sbjct: 69 ELLA-NESDADMKEMAREELATNEALQPKLEEEIKLALVPKDPEDEKNVQMEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++Y + W + V S S+ GG+KEI +SG V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKKYCDSKGWTLSVTSESEGAVGGFKEIDFAVSGANVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 248 VRLRYPWRNPNTGETEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYVDDIANRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I ++I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGFTTHDLQGFLGGNIQEMIDALTVAENAEKLKE 367 >gi|282882091|ref|ZP_06290732.1| peptide chain release factor 1 [Peptoniphilus lacrimalis 315-B] gi|281298121|gb|EFA90576.1| peptide chain release factor 1 [Peptoniphilus lacrimalis 315-B] Length = 358 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 164/352 (46%), Positives = 243/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++R+ E+E + + ++ Y K E+A + PI+SK Y + K+ D Sbjct: 3 EKLSVFEDRYNELEKSLMDINVINNSSLYQKTAIEHAELQPIVSKYREYKKTKENLNDSK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D +++DL + ++ EK + ++E ++ LL+PKD +D K+ ++EIRAG GG Sbjct: 63 ALLAEKLDD-DMKDLVKDDISTNEKNLEKIEEDLKILLIPKDPNDKKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFR Y RYA WKV+++S+++ GGYKE+V I GRG +SR+K+ESGVH Sbjct: 122 EAALFAGTLFRQYVRYAERCGWKVDIISTNEIGIGGYKEVVFMIIGRGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++V+I +I+ D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEVEIDPTEIKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ N+ +AMK+LRA+LYD++ + + SA R Q+G+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLMNKEKAMKLLRAKLYDLKIQEQNEKNSAQRLSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ QGR+TDHRIN T +++ + G +D++I+ L A Q K + + Sbjct: 302 SERIRTYNYPQGRVTDHRINYTTHQIVSINDGELDELIDALTAADQIKKLEN 353 >gi|157962943|ref|YP_001502977.1| peptide chain release factor 1 [Shewanella pealeana ATCC 700345] gi|189039992|sp|A8H7A5|RF1_SHEPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157847943|gb|ABV88442.1| peptide chain release factor 1 [Shewanella pealeana ATCC 700345] Length = 361 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + + L++EY+ + ++S + Q ++ Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDAGVIADQERFRALSKEYSQLEDVVSTFKSFQQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E++++AQ E + I LE+E+ LLLPKD +DD +C +EIR Sbjct: 61 DLESAKEMM--EEDDPELKEMAQEEYKVAKSAIAALEDELQILLLPKDPNDDNNCFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA ++W++EV+++++ + GG+KE++A ISG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAESKRWQIEVMNTNEGEHGGFKEVIAKISGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVIVLPEVPEAEAIEINKADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR+++HRINLTLY+L ++G ID ++ PL+ +QA M+ + Sbjct: 299 LVSSGDRSERIRTYNFPQGRVSEHRINLTLYRLGEFMEGDIDCVVEPLIQENQADMLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|300115109|ref|YP_003761684.1| peptide chain release factor 1 [Nitrosococcus watsonii C-113] gi|299541046|gb|ADJ29363.1| peptide chain release factor 1 [Nitrosococcus watsonii C-113] Length = 360 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 178/362 (49%), Positives = 245/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ ++E + +L++EYA + P+IS ++Q + Sbjct: 1 MKDSIRSKLETLAERQQELTALLAEPEIASAQKQFRELSQEYAQLEPVISCFRDFEQAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D E+R LAQ E+ A EK++ L+ E++ LLLP D +D ++ LEIR Sbjct: 61 VLDESKALLQDQ--DPELRVLAQEEIAATEKKLERLDRELHTLLLPTDPNDKRNIFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DL RMY RY R W+ E++ S + GG+KEI+ I G G +SR+K Sbjct: 119 AGTGGDEAALFASDLLRMYLRYVEQRGWRTEIMGDSPGEHGGHKEIIVRIVGAGAYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PEA E ++DI D+R+DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPQTESQGRIHTSACTVAIMPEAEEIDEIDINPADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+GI+V E+SQH+NR RAM +LR +L E +++ E +A R+ Sbjct: 239 VNKTDSAIRITHLPSGIVVECQDERSQHKNRARAMSLLRTKLKLEEEEKLVAEETATRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +LQG +D II+ L+ +QA + + Sbjct: 299 LIGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDEILQGNLDAIIDLLVAEYQADQLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|229917064|ref|YP_002885710.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b] gi|259585222|sp|C4KYV2|RF1_EXISA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229468493|gb|ACQ70265.1| peptide chain release factor 1 [Exiguobacterium sp. AT1b] Length = 356 Score = 279 bits (713), Expect = 5e-73, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 248/354 (70%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++R+ ++ +++ + KL ++E A + + Y + Q ++ Sbjct: 3 DRLSVLEDRYMQLNEMLADPEVLSDSTKLRQYSKEQAQLEETVQMYRQYKETSQAFKEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ D D+E+R+LA+ E+ +E E++ELE ++ LLLPKD +D+K+ I+E+R GG Sbjct: 63 SMLEDRTLDAEMRELAKEEMNLLEPEVKELEAKLRILLLPKDPNDEKNVIVEVRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL++MY R+A + WKVE++ ++ + GG+KE+ I+G G +S++KFE+G H Sbjct: 123 EAALFAGDLYKMYTRFAERQNWKVELIDANYTELGGFKEVTFMINGAGAYSKLKFENGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATVAVLPEA +++V I ++D+R+DT +SG GGQ VNTT SA Sbjct: 183 RVQRVPSTESGGRIHTSTATVAVLPEAEDVEVHIDMKDVRVDTFTSSGPGGQSVNTTQSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIP+G++V EKSQH+N+ +AMKVLRARLYD + E SA RK +G+GDR Sbjct: 243 VRLTHIPSGLVVSCQDEKSQHKNKDKAMKVLRARLYDKMQSEHMEELSAQRKSAVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ VL G ++DII+ L+ QA+++ A Sbjct: 303 SERIRTYNFPQSRVTDHRIGLTLQKLDRVLAGELEDIIDALIMDEQARLMEDAE 356 >gi|157376591|ref|YP_001475191.1| peptide chain release factor 1 [Shewanella sediminis HAW-EB3] gi|189039993|sp|A8FYZ0|RF1_SHESH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157318965|gb|ABV38063.1| peptide chain release factor 1 [Shewanella sediminis HAW-EB3] Length = 361 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 250/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S+ + + L++EY+ + +++ + Q + Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDPGVISDQERFRALSKEYSQLEDVVTSFKSFQQATE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D D E++++AQ E+ + + +LE+E+ LLLPKD +DD +C +EIR Sbjct: 61 DLEAAKEMASD--DDPELKEMAQEEMKEAKSLLEKLEDELQILLLPKDPNDDNNCFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY +Y ++W++EV+++++ + GG+KE++A +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSKYVESKRWQLEVMNTNEGEHGGFKEVIAKVSGEGVYGQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVVVLPEIPESEAIEINKGDLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIP+GI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRLTHIPSGIVVECQDQRSQHKNRAQAMSVLTARIQAVEDEKRRSAEESTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ +QA M+ + Sbjct: 299 LVGSGDRSERIRTYNFPQGRVSEHRINLTLYRLNEVMEGELDAILEPLMLENQADMLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|317491752|ref|ZP_07950187.1| peptide chain release 1 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920186|gb|EFV41510.1| peptide chain release 1 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 360 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EYA ++ + + Q +++ Sbjct: 8 KLEALQERHEEVQAHLGDAGVIADQDRFRALSREYAQLTDVTRCFQTWQQVQEDLSTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + +I +LE ++ LLLPKD DD++SC LEIRAGTGG E Sbjct: 68 ML----DDPEMREMAQEEIAEAKNQIADLEQQLQILLLPKDPDDERSCYLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GD+FRMY RYA R+WK+EV+S+++ + GGYKEI+A + G G + R+KFESG HR Sbjct: 124 AALFAGDMFRMYSRYAESRRWKIEVMSANEGEHGGYKEIIAKVIGDGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPEIPEAELPDINPGDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEMAKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLT+Y+L+ V++G +D +I P++ +QA + S SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEVMEGKLDSLIEPIVQEYQADQLASLSE 358 >gi|90407674|ref|ZP_01215854.1| peptide chain release factor 1 [Psychromonas sp. CNPT3] gi|90311265|gb|EAS39370.1| peptide chain release factor 1 [Psychromonas sp. CNPT3] Length = 363 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 159/362 (43%), Positives = 238/362 (65%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + D Y KLT+EY+ + ++ Y + Sbjct: 1 MKASIVAKLEGLVERYEEVQALLGDPATLADQDKYRKLTKEYSQLEVVVLSFKGYQGAVE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D E++++A EV + + L +E+ LLLPKD +DD++C +EIR Sbjct: 61 DLESAKMMLED--DDPEMQEMAVEEVKEAKATLETLSSELEILLLPKDPNDDRNCYIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F G+LFRMY +Y +KW++E+++++ ++ GGYKE++A I G G + MK Sbjct: 119 AGAGGDEAAIFAGNLFRMYSKYIDSKKWRLEIMNTNASEQGGYKEVIAKIEGEGAYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TV V+PE E + + D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVPEAEAIVINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+THIPTG +V ++SQH+NR +AM VL+ARL E ++ E R+ Sbjct: 239 VNKTDSAVRLTHIPTGTVVECQDQRSQHKNRAQAMSVLQARLQQAEDEKNHAEEQVIRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYN+ QGR++DHRINLTLY L +L+G +D +++P+L QA + + Sbjct: 299 LVASGDRSERIRTYNYPQGRVSDHRINLTLYCLHDILEGELDALLDPILLEDQADKLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AQ 360 >gi|205375314|ref|ZP_03228104.1| peptide chain release factor 1 [Bacillus coahuilensis m4-4] Length = 356 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 237/355 (66%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ ++ +S+ V KL ++E + + Y K++ D Sbjct: 3 DRLQAVEDRYDKLNELLSDPEVVSDPKKLREYSKEQSGHQATVEAYREYKDAKEQYNDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R++ + E+ +E++I LE + LL+PKD +DDK+ I+E+R GG Sbjct: 63 QMLEDK-LDPEMREMVKEEISELEEQIESLEERMKILLIPKDPNDDKNVIMEVRGAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G L+RMY R+A ++ WK EV+ SS GGYKEI+ I+G G FS+MK+E+G H Sbjct: 122 EAALFAGTLYRMYSRFAEMQGWKTEVIESSPTGLGGYKEIIFMINGNGAFSKMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPEA E++++I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEAEEVEIEIHDKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG +V EKSQ +N+ +AMKVLRAR+YD ++ E A RK +GSGDR Sbjct: 242 VRLTHLPTGTVVSCQDEKSQIKNKEKAMKVLRARVYDKFQQEAQAEYDAQRKSAVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D++I+ L+ Q+ + S + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKMDEVIDALILEDQSSKLESMED 356 >gi|229551967|ref|ZP_04440692.1| peptide chain release factor RF1 [Lactobacillus rhamnosus LMS2-1] gi|229314702|gb|EEN80675.1| peptide chain release factor RF1 [Lactobacillus rhamnosus LMS2-1] Length = 386 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 238/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L R+ E+E MS+ + Y+ L++E + +++ Y Q + ++ Sbjct: 33 EQLDGLLVRYEELEELMSDPEVISDTKRYLALSKEEGGMRDVVAAYKKYKQVLSDIKESE 92 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + + D ++ LA+ ++ ++K+ +LE +I L+LPKD +DDK+ I+EIR GG Sbjct: 93 EVLRE-SKDEDMEALAKEDLEDLQKQKADLEEKIKVLMLPKDPNDDKNIIMEIRGAAGGD 151 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL MY YA + WK E++ S+ + GGYKE+V I+G V+S++K+E+G H Sbjct: 152 EASLFAGDLLNMYMHYAERQGWKAEIVDSTPTEVGGYKEVVVMITGDNVYSKLKYENGAH 211 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE E+D+ I +DIR D R+SG+GGQHVN T SA Sbjct: 212 RVQRVPVTESAGRVHTSTATVGVMPEYDEVDLKIDPKDIRTDVYRSSGAGGQHVNKTSSA 271 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +NR RAM++LR+R+YD + NRK IG+GDR Sbjct: 272 VRMTHIPTGIVVSMQDERSQQENRARAMQILRSRVYDYYETENQEKYDQNRKNAIGTGDR 331 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ QA+ + S + Sbjct: 332 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIIDALIVHDQAQKMESLN 385 >gi|269837927|ref|YP_003320155.1| peptide chain release factor 1 [Sphaerobacter thermophilus DSM 20745] gi|269787190|gb|ACZ39333.1| peptide chain release factor 1 [Sphaerobacter thermophilus DSM 20745] Length = 361 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 171/357 (47%), Positives = 245/357 (68%), Gaps = 6/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQ 60 + ++ L+ RF E++ +++ V KL E A + +++ + E Sbjct: 3 ILTSKLDQLEARFEELDRLLADPEVVTNPEKLAEYGRERADLEEVVTTYRTRKRVDAEIA 62 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + +++ + D ++ +LA+ E+ + +E L+NEI LL+PKD +D+K+ I+EIRAGT Sbjct: 63 EAESLLR--SGDPDLEELAEEELKRLREERERLDNEIRMLLVPKDPNDEKNVIVEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLFRMY +YA R WK++V+S+++ GG+KEI+ + GRG +S +K+ES Sbjct: 121 GGEEAALFAADLFRMYSQYAEKRGWKIDVMSANETGIGGFKEIIFEVRGRGAYSELKYES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTS ATVAVLPEA E+D+ I ED+RID R++G GGQ VNTT Sbjct: 181 GVHRVQRVPVTESGGRIHTSTATVAVLPEAEEVDIQINEEDLRIDVFRSTGHGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQ +NR +AM VLRARLYD+E++R+ ERS R+ Q+G+ Sbjct: 241 DSAVRITHLPTGLVVTCQDEKSQIKNRAKAMAVLRARLYDLEQRRLHEERSGMRRSQVGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+R+E+IRTYNF Q R+TDHR+ L+L L +L G ID I L A QA+ + +A Sbjct: 301 GERAEKIRTYNFPQDRVTDHRLKLSLGNLPEILNGEIDTFIRELRAADQAERLKAAG 357 >gi|169826579|ref|YP_001696737.1| peptide chain release factor 1 [Lysinibacillus sphaericus C3-41] gi|238688208|sp|B1I069|RF1_LYSSC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|168991067|gb|ACA38607.1| Peptide chain release factor 1 (RF-1) [Lysinibacillus sphaericus C3-41] Length = 358 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 156/355 (43%), Positives = 238/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V+ KL ++E + I + Y K++ D Sbjct: 3 DRLQAVEDRYERLTELLSDPDIVNDSKKLREYSKEQSDIQETVDTYREYKNVKEQLVDTR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D ++ ++ + E ++ + ELE + LL+PKD +D+K+ I+EIR GG Sbjct: 63 EML-DSEKDPDMHEMVKEEFNLLKAQQEELEERLRILLIPKDPNDNKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY RYA + WK++++ ++ N GGYKE++ I+G+G +S+ KFE+G H Sbjct: 122 EANIFAGDLFRMYSRYAETQGWKIDIMEATPNPMGGYKEVIFMINGQGAYSKFKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATVA LPE E+DV+I +DIR+DT +SG+GGQ VNTT SA Sbjct: 182 RVQRVPATESQGRIHTSTATVACLPEVEEVDVEIHEKDIRVDTFASSGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V+ E+SQ +NR +AMK+LRAR+ D+ + E A RK +GSGDR Sbjct: 242 VRMTHLPTGVVVSMQDERSQIKNREKAMKILRARVADMYMQEAQKEIDATRKSAVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ QA + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGRLDEIIDTLILEEQASKLERLND 356 >gi|108759492|ref|YP_633064.1| peptide chain release factor 1 [Myxococcus xanthus DK 1622] gi|20139339|sp|Q93NC7|RF1_MYXXA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361565|sp|Q1D2Q9|RF1_MYXXD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|14517940|gb|AAK64443.1|AF377339_4 peptide chain release factor RF-1 [Myxococcus xanthus] gi|108463372|gb|ABF88557.1| peptide chain release factor 1 [Myxococcus xanthus DK 1622] Length = 362 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 159/355 (44%), Positives = 235/355 (66%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ D++ RF + +S + K+++E A + ++ Y + + + Sbjct: 1 MIDKLEDVERRFERLTADLSNPDVLADSARLQKVSKERAGLEKLVEAFRTYRKVLADLSE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +G +SD++ + A+ + ++++ ELE + LLLPKD +D+K+ ILEIRAG G Sbjct: 61 VEAWLG--SSDADEKAFARESLPGLKEQRDELEASLKILLLPKDPNDEKNVILEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF ++ +MY RYA R WK ++L S + GG K+ T+SG VFS MK+ESG Sbjct: 119 GDEAALFAEEVMQMYLRYADRRGWKADILDMSPGNAGGVKDATVTLSGDAVFSSMKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS TV+V+PEA ++DV + DI + MR++GSGGQ VNTTD Sbjct: 179 VHRVQRVPATETQGRIHTSTITVSVMPEAEDVDVQVNPADIEMQVMRSTGSGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H PTGI+V EKSQ +NR AM++LRA+LYD+E++R+ NER + R+ Q+G+G Sbjct: 239 SAVRLIHHPTGIVVKCQQEKSQLKNRTMAMRMLRAKLYDIEQERIRNERDSARRAQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSE+IRTYNF Q R+TDHRI LT++ L V+ G ++D+I T +QA+ + + Sbjct: 299 DRSEKIRTYNFPQDRLTDHRIGLTVHNLPGVMAGDVEDVITACRTFYQAEALKAQ 353 >gi|332653076|ref|ZP_08418821.1| peptide chain release factor 1 [Ruminococcaceae bacterium D16] gi|332518222|gb|EGJ47825.1| peptide chain release factor 1 [Ruminococcaceae bacterium D16] Length = 354 Score = 279 bits (712), Expect = 6e-73, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 239/354 (67%), Gaps = 8/354 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ ++++IE R+S S + + KL +E + P++ Y + +Q + Sbjct: 1 MQDKLAAIEAKYSQIEARLSASETYEDPALVAKLNKEQTELQPLVETYRTYLRTQQSHLE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +++ SD E+++LAQ E ++++ LE+++ LLLPKD +DDK+ I+EIRAG G Sbjct: 61 AESLL----SDPEMKELAQEEWRQSKEDLERLEHQLKILLLPKDPNDDKNVIVEIRAGVG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF L+RMY +A WK EV S S+ + GG KEI TI G G +SR+KFESG Sbjct: 117 GEEAALFAHSLYRMYSMFAEANHWKTEVDSVSETELGGVKEISFTIEGDGAYSRLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GRVHTS TVAVLPE DV I DI + R+SG+GGQHVN T Sbjct: 177 VHRVQRVPETESGGRVHTSTVTVAVLPEMETADVQINPADIEMQVFRSSGAGGQHVNKTS 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H PTG +V E+SQ QNR +AM++L +RLY+ E++++++E +A R+ Q+GSG Sbjct: 237 SAVRLIHKPTGTVVECQQERSQFQNRDKAMRILASRLYEAEQEKISSEYTAQRRSQVGSG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+ERIRTYNF QGR+TDHRI LTLYK++ ++ G ++++I+ L A QA+ + S Sbjct: 297 MRNERIRTYNFPQGRVTDHRIGLTLYKIDNIMNGDLNEVIDALAAADQAERLQS 350 >gi|160945367|ref|ZP_02092593.1| hypothetical protein FAEPRAM212_02889 [Faecalibacterium prausnitzii M21/2] gi|158443098|gb|EDP20103.1| hypothetical protein FAEPRAM212_02889 [Faecalibacterium prausnitzii M21/2] Length = 361 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 148/354 (41%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + RF E+ +R+++ + + KL EY P++ + Sbjct: 7 RMDAVCRRFEELSMRLNQPDAAADPALFRKLMREYHDTEPVVEAYRDWQTALDHLAQAKA 66 Query: 65 VIGDHNS-DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + S D + + + Q E+ +++ +LEN + LLLPKD +D K+ I+EIR+G GG Sbjct: 67 LLEEPGSLDPDFKQMIQQEISEKSQDVAKLENNLKILLLPKDVNDGKNVIMEIRSGAGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L RMY YA R W +E+L+ ++ + GG KE + ++ G G ++R+K+ESGVH Sbjct: 127 EAALFAHSLLRMYTMYAQNRGWTLELLNLNETELGGVKEAIISVDGAGAYNRLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS ATVAV+P+A E+D + ++D+RIDT R+SG+GGQH+N T SA Sbjct: 187 RVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+THIPTG +V +E+SQ QN+ +A+++LR+RL ++K + +A R+ Q+G+GDR Sbjct: 247 IRVTHIPTGTVVECQNERSQFQNKDKALEILRSRLLAQKQKEQQDAINAQRQGQVGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R TDHRI LT++ LE ++ G +D++I+ L T Q + + Sbjct: 307 SEKIRTYNFPQDRCTDHRIGLTVHNLEKIMDGNLDEVIDALATREQTEKLQRLG 360 >gi|30249865|ref|NP_841935.1| peptide chain release factor 1 [Nitrosomonas europaea ATCC 19718] gi|46576779|sp|Q82TH4|RF1_NITEU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|30180902|emb|CAD85824.1| prfA: peptide chain release factor 1 [Nitrosomonas europaea ATCC 19718] Length = 359 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 180/356 (50%), Positives = 237/356 (66%), Gaps = 9/356 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ L R E++ +S +D Y KL+ E A I P+ Y Q +Q+ Sbjct: 7 DQLTRLSMRLGELDKLLSTEKITADLDNYRKLSRERAEIEPVTELYRTYQQVEQDLATAR 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + +SD + RD A+ E+ A +++ +E EI LLPKD +D+++ LEIRAGTGG Sbjct: 67 EM----SSDPQFRDFAEAEIEADRRKLTNIETEILRQLLPKDPNDERNIFLEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY RYA W+VEV+S + ++ GGYKEI+ I G G +SR+KFESG H Sbjct: 123 ESALFAGDLFRMYSRYAEREGWQVEVVSQNPSEVGGYKEIIVRIIGHGAYSRLKFESGGH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATE GRVHTS TVAVLPEA EI D+RIDT RASG+GGQH+N TDS Sbjct: 183 RVQRVPATETQGRVHTSTCTVAVLPEADEIADITLNPADLRIDTFRASGAGGQHINKTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+ +SQH+N+ +AM VL AR+ D + + E++A RK +GSG+ Sbjct: 243 AVRITHLPTGIVAECQEGRSQHKNKAQAMSVLIARILDKQVRAQQAEQAATRKSLVGSGE 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGRITDHRINLTLYK+E ++ G +D++ + L HQA + + +E Sbjct: 303 RSERIRTYNFPQGRITDHRINLTLYKIEQIIDGELDELCSALAAEHQAAQLAAMTE 358 >gi|23015680|ref|ZP_00055449.1| COG0216: Protein chain release factor A [Magnetospirillum magnetotacticum MS-1] Length = 354 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 175/358 (48%), Positives = 250/358 (69%), Gaps = 8/358 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY--IKLTEEYAAISPIISKISIYDQKKQEEQ 60 Q + R E+ ++S +D+ +L++E + + P+++ + + + +++ Sbjct: 1 MNLEPQFDKVLYRHDEVRAQLSSGDGLDSQTIQRLSKELSELDPVVTAVVAFRKAREDMV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ +D +++DLA+ E A+++ + LE E+ +LLPKD D+K+ I+E+RAGT Sbjct: 61 QAAEMM----NDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMYERYA++ W+ EV+ +D GG KE ATI+GR VF+R+KFES Sbjct: 117 GGEEAALFAAELFRMYERYASVHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFES 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GR+HTSAATVA++PEA E+D+ + D+R D R+ GSGGQ VNTT Sbjct: 177 GVHRVQRVPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTT 236 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTG+ + EKSQH+N+ A+K+LRARLY+ ER ER+A RK Q+GS Sbjct: 237 DSAVRVTHIPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYK++ V+ G +D++I L+ A QA+ + Sbjct: 297 GDRSERIRTYNFPQGRVTDHRINLTLYKIDAVMSGDALDELIEALVAADQAERLAEME 354 >gi|317495271|ref|ZP_07953641.1| peptide chain release 1 [Gemella moribillum M424] gi|316914693|gb|EFV36169.1| peptide chain release 1 [Gemella moribillum M424] Length = 362 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 234/353 (66%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ R+ ++ +S+ V KL ++E +I ++ Y Q+ D Sbjct: 6 QLEVVEERYEKLNELLSDPDVVSDTKKLMEYSKEQRSIEKTVAVFREYKNIVQQIADTKE 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++ Q E+ +E + +E E+ LLLPKD +D K+ ++E+R GG E Sbjct: 66 LLEIEE-DKEMKEMMQEEIKELEPSLAPMEEELKILLLPKDPNDGKNVVVEVRGAAGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDL RMY R+A + WKV+VL S+ GG KE + ISG V+S+MKFESG HR Sbjct: 125 AQLFAGDLLRMYTRFAESQGWKVDVLERSETGIGGIKEAIFIISGEDVYSKMKFESGAHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS ATV VLPEA EI++DI DIR+DT +SG+GGQ VNTT SAV Sbjct: 185 VQRVPTTESSGRIHTSTATVVVLPEAEEIEIDINENDIRVDTFASSGAGGQSVNTTMSAV 244 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ E+SQ +N+ +AMKVLRAR+YD ++ + A RK ++G+GDRS Sbjct: 245 RLTHIPTGVVVSMQDERSQIKNKEKAMKVLRARVYDKYQQEEQAKFDAERKSKVGTGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+++ L A QA+ + + Sbjct: 305 ERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEVLEALRIAEQAEKMAELN 357 >gi|167644945|ref|YP_001682608.1| peptide chain release factor 1 [Caulobacter sp. K31] gi|167347375|gb|ABZ70110.1| peptide chain release factor 1 [Caulobacter sp. K31] Length = 334 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 191/336 (56%), Positives = 247/336 (73%), Gaps = 5/336 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + +KL++E+A + P+ + + E DL + D E+ + E Sbjct: 1 MGAATDGAEIVKLSKEHAELRPVAEAVQALAKLAAERADLEEMTA----DPEMAAMVSDE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A+++++ +E E+ +L P+D D++ S ILE+RAGTGG EAALF GDLFRMY+RYA L Sbjct: 57 IQALDEKLPVMERELALMLAPRDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQL 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WKVEV S S+ + GGYKEI+A+++G GVF R KFESGVHRVQRVPATEA GR+HTSAA Sbjct: 117 QGWKVEVDSVSEGEMGGYKEIIASVTGDGVFGRWKFESGVHRVQRVPATEAQGRIHTSAA 176 Query: 203 TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQ 262 TVAVLPEA +++++I DIRIDT R+SG+GGQHVN TDSAVRITH+PTG++VTSSEKSQ Sbjct: 177 TVAVLPEAEDVEIEINDADIRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVTSSEKSQ 236 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 HQNR RAMK L+ARLYD++R + RS RK Q+GSGDRSERIRTYNF QGR+TDHRIN Sbjct: 237 HQNRARAMKNLKARLYDLQRTALDTARSDARKSQVGSGDRSERIRTYNFPQGRVTDHRIN 296 Query: 323 LTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 LT+Y L V++G +DDII PL+ QA + S E Sbjct: 297 LTVYNLPKVMEGDALDDIIKPLIAEDQAARLASLEE 332 >gi|56965632|ref|YP_177366.1| peptide chain release factor 1 [Bacillus clausii KSM-K16] gi|61214582|sp|Q5WB55|RF1_BACSK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56911878|dbj|BAD66405.1| peptide chain release factor 1 [Bacillus clausii KSM-K16] Length = 356 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 162/357 (45%), Positives = 238/357 (66%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 +++ +++R+ + ++S+ + KL ++E A I + Y Q ++ D Sbjct: 1 MLERLQAVEDRYEYLNEQLSDPNVISNATKLREYSKEQAQIEETVQTYRQYKQVTEQLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D ++ + + E+ + + ELE + LLLPKD +DDK+ I+EIR G Sbjct: 61 AKAMLEEKLDD-DMYQMVKEELDELSERKAELEERLKILLLPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DL++MY RYA ++ WK EV+ + + GGYKEI+ ++G G +S++K+E+G Sbjct: 120 GDEAQLFAADLYKMYHRYAEMQGWKTEVIEAHATELGGYKEIIFMVNGSGAYSKLKYENG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI +DIR+DT +SG GGQ VNTT Sbjct: 180 AHRVQRVPQTESGGRIHTSTATVAVLPEAEEVEIDIHEKDIRVDTFASSGPGGQSVNTTM 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PT +V EKSQ +N+ +AMKVLRAR++D ++ E + +RKL +G+G Sbjct: 240 SAVRLTHLPTNTVVSCQDEKSQIKNKEKAMKVLRARIFDKVQQEAQAEYAESRKLAVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LTL KLE VLQG +D+II+ L+ A Q++ + A E Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTLQKLEQVLQGKLDEIIDALVVADQSEAMKKAEE 356 >gi|218886539|ref|YP_002435860.1| peptide chain release factor 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|226739101|sp|B8DLL6|RF1_DESVM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|63852197|dbj|BAD98449.1| peptide release factor 1 [Desulfovibrio vulgaris] gi|218757493|gb|ACL08392.1| peptide chain release factor 1 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 357 Score = 279 bits (712), Expect = 7e-73, Method: Composition-based stats. Identities = 188/354 (53%), Positives = 256/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +L+ RF ++E +++ S + Y KLT+ +A + ++ Y + +Q D Sbjct: 4 KLENLERRFEDLEQQLASSEVFNDQDRYRKLTKAHADLKEVVDVFRRYKELRQNLADNKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D EIR +A E ++E I E+E E+ LLLPKD D+K+ I+EIRAGTGG E Sbjct: 64 LLDDA--DPEIRSMAHEEAKSLESAIPEIEQELQLLLLPKDPLDEKNTIVEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA +R WKVE+LS++++D GGYKE++A I G V+SR+KFESG HR Sbjct: 122 AALFAADLFRMYSRYAEIRGWKVEILSANESDTGGYKEVIALIVGDKVYSRLKFESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVA+LPEA E+DV+I +DIRID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATESQGRIHTSAATVAILPEAEEVDVEIRPDDIRIDVFRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+P+GI+V EKSQH+N+ +AMKVL +RL E+ R NE +A+R+ Q+GSGDRS Sbjct: 242 RITHMPSGIVVSCQDEKSQHKNKAKAMKVLASRLLQAEQDRQHNEMAADRRSQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLY L+ V++G + + L T Q + + + ++ Sbjct: 302 ERIRTYNFPQGRVTDHRINLTLYSLDRVMEGEAQALFDALSTHAQTEALKAQAD 355 >gi|295105440|emb|CBL02984.1| bacterial peptide chain release factor 1 (bRF-1) [Faecalibacterium prausnitzii SL3/3] Length = 361 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 148/354 (41%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + RF E+ +R+++ + + KL EY P++ + Sbjct: 7 RMDAVCRRFEELSMRLNQPDAAADPALFRKLMREYHDTEPVVEAYRDWQTALDHLAQAKA 66 Query: 65 VIGDHNS-DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + S D + + + Q E+ +++ +LEN + LLLPKD +D K+ I+EIR+G GG Sbjct: 67 LLEEPGSLDPDFKQMIQQEISEKSQDVAKLENNLKILLLPKDVNDGKNVIMEIRSGAGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L RMY YA R W +E+L+ ++ + GG KE + ++ G G ++R+K+ESGVH Sbjct: 127 EAALFAHSLLRMYTMYAQNRGWTLELLNLNETELGGVKEAIISVDGAGAYNRLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS ATVAV+P+A E+D + ++D+RIDT R+SG+GGQH+N T SA Sbjct: 187 RVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+THIPTG +V +E+SQ QN+ +A+++LR+RL ++K + +A R+ Q+G+GDR Sbjct: 247 IRVTHIPTGTVVECQNERSQFQNKDKALEILRSRLLAQKQKEQQDAINAQRQGQVGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R TDHRI LT++ LE ++ G +D++I+ L T Q + + Sbjct: 307 SEKIRTYNFPQDRCTDHRIGLTVHNLEKIMDGNLDEVIDALATREQTEKLQKLG 360 >gi|170728014|ref|YP_001762040.1| peptide chain release factor 1 [Shewanella woodyi ATCC 51908] gi|238688639|sp|B1KDU3|RF1_SHEWM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169813361|gb|ACA87945.1| peptide chain release factor 1 [Shewanella woodyi ATCC 51908] Length = 361 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S+ + + L++EY+ + ++ + + Q + Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDPSVIADQERFRALSKEYSQLEDVVKSFTAFQQATE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + D E++++AQ E+ + + LE+E+ LLLPKD +DD + +EIR Sbjct: 61 DLEAAKEMLNE--DDPELKEMAQEEMKEAKSVLETLEDELQILLLPKDPNDDNNAFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY +Y+ +W++EV+++++ + GG+KE++A ISG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSKYSESNRWQIEVMNTNEGEHGGFKEVIAKISGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVIVLPEIPEAEAIEINKADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ +E + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLSARIQAVEDEKRRSEEESTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR++DHRINLTLY+L V++G +D II PL+ +QA ++ + Sbjct: 299 LVSSGDRSERIRTYNFPQGRMSDHRINLTLYRLNEVMEGVLDVIIEPLILENQADLLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|259046347|ref|ZP_05736748.1| peptide chain release factor 1 [Granulicatella adiacens ATCC 49175] gi|259036984|gb|EEW38239.1| peptide chain release factor 1 [Granulicatella adiacens ATCC 49175] Length = 359 Score = 278 bits (711), Expect = 7e-73, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ R+ E+ +S+ + +++LT+E A + P + Y Q +E D Sbjct: 3 DQLDSFIIRYDELSELLSDPEVIGDTKRFMELTKEEANLRPKVETFKRYQQVVEEISDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ + D+E+ ++A+ E+ +++KE ELE++I +LLLP+D +D K+ I+EIR GG Sbjct: 63 EMLGE-SLDAEMAEMAKEELSSLKKEKVELEDKIKFLLLPEDPNDGKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY++YA + W+VEV+ ++ GGYKE++ I+G VFS++K+ESG H Sbjct: 122 EAALFAGDLLTMYQKYAESQGWRVEVMDANVTGIGGYKEVILMITGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GRVHTS ATV V+PEA E+++++ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRVHTSTATVVVMPEAEEVEIELEDKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD + +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDKISQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ VL G ID+I++ L+ + + + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTLQKLDQVLAGKIDEIVDALILYDHTEKLEQLN 355 >gi|329766951|ref|ZP_08258479.1| peptide chain release factor 1 [Gemella haemolysans M341] gi|328837676|gb|EGF87301.1| peptide chain release factor 1 [Gemella haemolysans M341] Length = 362 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ R+ ++ +S+ V KL ++E +I ++ Y Q+ +D Sbjct: 6 QLEIVEERYEKLNELLSDPDVVSDTKKLMEYSKEQRSIEKTVAVFREYKDIVQQIKDTKE 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++ Q E+ +E + +E E+ LLLPKD +D K+ ++E+R GG E Sbjct: 66 LLEIEE-DKEMKEMMQEEIKELEPTLAPMEEELKILLLPKDPNDGKNVVVEVRGAAGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDL RMY R+A + WKV+VL S+ GG KE++ ISG V+S+MKFESG HR Sbjct: 125 AQLFAGDLLRMYTRFAESQGWKVDVLERSETGIGGIKEVIFIISGEDVYSKMKFESGAHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS ATV VLPEA EI++DI DIR+DT +SG+GGQ VNTT SAV Sbjct: 185 VQRVPTTESSGRIHTSTATVVVLPEAEEIEIDINENDIRVDTFASSGAGGQSVNTTMSAV 244 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ E+SQ +N+ +AMKVLRAR+YD ++ + A RK ++G+GDRS Sbjct: 245 RLTHIPTGVVVSMQDERSQIKNKEKAMKVLRARVYDKYQQEEQAKFDAERKSKVGTGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+++ L A QA+ + + Sbjct: 305 ERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEVLEALRIAEQAEKMAELN 357 >gi|239828604|ref|YP_002951228.1| peptide chain release factor 1 [Geobacillus sp. WCH70] gi|259585224|sp|C5D9N4|RF1_GEOSW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|239808897|gb|ACS25962.1| peptide chain release factor 1 [Geobacillus sp. WCH70] Length = 358 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ ++ + + ++ KL ++E + +S + Y +++ + Sbjct: 3 ERLEAVEERYEKLNQLLMDPEVINDPKKLRDYSKEQSDLSETVQTYREYKSVRKQLDEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++ + E+ +E++ EL N++ LLLPKD +D+K+ I+EIRA GG Sbjct: 63 AML-EEKLDPEMREMVKEEIDELEQKEEELVNKLKILLLPKDPNDEKNVIMEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ +S GGYKEI+ TI G+G +S++K+E+G H Sbjct: 122 EAALFAGDLYRMYTRYAESQGWKTEVIEASPTGLGGYKEIIFTIIGKGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE EI+V+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEMEEIEVEINEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHIPTGIVVTCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ VL G +D+II L+ Q+K + A+ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGNLDEIIEALILDDQSKKLEQAN 355 >gi|87122989|ref|ZP_01078849.1| peptide chain release factor 1 [Marinomonas sp. MED121] gi|86161726|gb|EAQ63031.1| peptide chain release factor 1 [Marinomonas sp. MED121] Length = 363 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 253/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R+ E+ +S++ + D + ++EYA + P++ + + + Sbjct: 1 MKESIKLKLENLADRYEELAALLSDAEIIMNQDLFRAYSKEYAELEPVVKCFEEFQENDE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D SD +I+++ E+ A + EL ++ LLLPKD +D ++ +E+R Sbjct: 61 NLEEAQLMMTD--SDPDIKEMGVEEMKASQIRKEELLLDLQKLLLPKDPNDGRNVFVEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLFRMY RYA ++WKVE++S ++ + GGYKE++A I G G +S +K Sbjct: 119 AGTGGDEASIFAGDLFRMYSRYAETQRWKVELISCNEGEHGGYKEVIARIVGEGAYSLLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVPATE+ GR+HTSA TVA++PE E D ++I D+R+DT RASG+GGQH Sbjct: 179 FESGVHRVQRVPATESQGRIHTSACTVAIMPEMDEQDAIEINKADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+THIPTG++V E+SQH+NR +AM +L +RL E ++ A E+S RK Sbjct: 239 VNKTDSAIRLTHIPTGVVVECQDERSQHKNRAKAMALLASRLQAAEEEKHAAEQSETRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ ++ G +D+++ PL+ HQA + + Sbjct: 299 LVGSGDRSERIRTYNYPQGRVTDHRINLTLYKLDEIITGDLDNLVQPLINEHQAGQLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|261340150|ref|ZP_05968008.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC 35316] gi|288317665|gb|EFC56603.1| peptide chain release factor 1 [Enterobacter cancerogenus ATCC 35316] Length = 360 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSKCYTDWRQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + E+E ++ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELQDAKARSEEMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE+LS+++ + GG+KE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEILSANEGEHGGFKEVIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEYQADQLAALSE 358 >gi|295109135|emb|CBL23088.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus obeum A2-162] Length = 358 Score = 278 bits (711), Expect = 8e-73, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 247/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ + E + D + KL +E + + PI+ Y + K+ QD Sbjct: 3 DKLEDLLVRFEEVLNELGEPGVTDNQDRFQKLMKEQSELQPIVDTYKEYKENKETIQDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + E+R++ + E+ +K + ELE E+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 SMLEEEKD-EEMREMLKEELSDAKKRVEELEKELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA R+WK E++S ++N GG+KE+ I G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESRRWKTEMMSLNENGIGGFKEVTFMIQGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID + + D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTCTVAIMPEAEEIDFHLDMNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLY++E + + + R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELAKQHDAEAEARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL++L+ +L G +D+I++ L+ A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHRLDAILGGDLDEILDSLIAADQAAKLSTLNE 356 >gi|241890031|ref|ZP_04777329.1| peptide chain release factor 1 [Gemella haemolysans ATCC 10379] gi|241863653|gb|EER68037.1| peptide chain release factor 1 [Gemella haemolysans ATCC 10379] Length = 362 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 235/353 (66%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ R+ ++ +S+ V KL ++E +I ++ Y Q+ +D Sbjct: 6 QLEIVEERYEKLNELLSDPDVVSDTKKLMEYSKEQRSIEKTVAVFREYKDIVQQIKDTKE 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++ Q E+ +E + +E E+ LLLPKD +D K+ ++E+R GG E Sbjct: 66 LLEIEE-DKEMKEMMQEEIKELEPTLAPMEEELKILLLPKDPNDGKNVVVEVRGAAGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDL RMY R+A + WKV+VL S+ GG KE + ISG V+S+MKFESG HR Sbjct: 125 AQLFAGDLLRMYTRFAESQGWKVDVLERSETGIGGIKEAIFIISGEDVYSKMKFESGAHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS ATV VLPEA EI++DI DIR+DT +SG+GGQ VNTT SAV Sbjct: 185 VQRVPTTESSGRIHTSTATVVVLPEAEEIEIDINENDIRVDTFASSGAGGQSVNTTMSAV 244 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ E+SQ +N+ +AMKVLRAR+YD ++ + A RK ++G+GDRS Sbjct: 245 RLTHIPTGVVVSMQDERSQIKNKEKAMKVLRARVYDKYQQEEQAKFDAERKSKVGTGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+++ L A QA+ + + Sbjct: 305 ERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEVLEALRIAEQAEKMAELN 357 >gi|118594305|ref|ZP_01551652.1| peptide chain release factor 1 [Methylophilales bacterium HTCC2181] gi|118440083|gb|EAV46710.1| peptide chain release factor 1 [Methylophilales bacterium HTCC2181] Length = 359 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 174/362 (48%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+NR E+ +S +D Y K+++E++ I P++ + + + Sbjct: 1 MKSSMQNKLNALQNRLEELNDELSSEEATKDMDRYKKISKEHSDILPVVDIYQEFTRHTK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D ++ SD E++ AQ E+ A + +I LE ++ LLLPKD +D+K+ LEIR Sbjct: 61 DMNDAKEML----SDPEMKSFAQDEIDANKAKIIMLEEQLQTLLLPKDPNDEKNIFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG E+ALF GD+FRMY RYA +W++EV+SS++++ GG+KEI+A + G+G +S++K Sbjct: 117 AGAGGDESALFAGDIFRMYSRYAERMRWQLEVISSNESEVGGFKEIIAKVIGQGAYSKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVL DVDI DIRIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPDTETQGRIHTSACTVAVLAEADEISDVDINPADIRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH PTGI+V ++SQH+N+ +AM +L AR+ D + ++ + RK Sbjct: 237 INKTDSAVRITHAPTGIVVECQDDRSQHRNKAQAMSILAARIKDAQINDQQSKIATERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGRITDHRINLTLYK+++V+ G + ++I+ L + HQA ++ Sbjct: 297 LIGSGDRSERIRTYNFPQGRITDHRINLTLYKIDFVMDGDLTELIDNLTSEHQADLLAQL 356 Query: 356 SE 357 E Sbjct: 357 DE 358 >gi|171779352|ref|ZP_02920316.1| hypothetical protein STRINF_01197 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281969|gb|EDT47400.1| hypothetical protein STRINF_01197 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 359 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMALSKEEASTRETVTVYREYKQILQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I D D E+ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 EDAEEMIKDAGGDPELEEMAKEELKDSKAAKEDYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL +MY++YA + WK +V+ +S N GG KE++ +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLQMYQKYAESQGWKFDVMEASYNGVGGIKEVIVMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILFDQTKKLEELN 358 >gi|262038076|ref|ZP_06011481.1| peptide chain release factor 1 [Leptotrichia goodfellowii F0264] gi|261747896|gb|EEY35330.1| peptide chain release factor 1 [Leptotrichia goodfellowii F0264] Length = 359 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 244/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ D+ + E+ + + + K+ + +I ++ K + Y +K+E + L Sbjct: 3 QKLDDVVLKHEELTRLLMDPEVISDPKKIMEYNKALNSIDEVVKKYTYYKSRKEEMESLK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E++++ E+ IE+EI LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 EDLK-AEKDPEMKEMMLEEIHTIEEEIPGLEEELKILLLPKDPNDDKNVIMEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D+FRM+ RYA +WK E++ S+ GG KE+ I G G +SR+KFESGVH Sbjct: 122 EAALFAADVFRMFTRYAERNRWKTEIIDKSEIGVGGLKEVTFLIKGNGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATEASGR+HTS TVAVLPE + +V+I D++IDT R+SG+GGQHVNTTDS Sbjct: 182 RVQRVPATEASGRIHTSTITVAVLPEIEDVNEVEINQSDLKIDTYRSSGAGGQHVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V + +SQ +NR AMKVL ++LY++E ++ E + R+ Q+GSGD Sbjct: 242 AVRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQRKEVESERRSQVGSGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYNF QGR+TDHRI LTL++LE VL G +D++I+ L+ QA+++ + + Sbjct: 302 RSEKIRTYNFPQGRVTDHRIKLTLHRLEGVLDGDLDEMIDALIAYDQAELLKAVGD 357 >gi|294501881|ref|YP_003565581.1| peptide chain release factor 1 [Bacillus megaterium QM B1551] gi|294351818|gb|ADE72147.1| peptide chain release factor 1 [Bacillus megaterium QM B1551] Length = 355 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ +S+ V+ KL ++E + I ++ Y K++ + Sbjct: 3 DRLEAVEARYEKLNELLSDPEIVNNPSKLREYSKEQSDIQQTVAAYQEYKDVKEQLSEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ D D+++RD+ + E+ +E + EL ++ LL+PKD +DDK+ I+E+R GG Sbjct: 63 TMLEDK-LDADMRDMVKEEIAELETQQEELVEKLRILLIPKDPNDDKNVIMEVRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY R+A + WK EV+ ++ GGYKEI+ I+G+G +S+MKFE+G H Sbjct: 122 EAALFAANLYRMYSRFAESQGWKTEVMEATTTGVGGYKEIIFMINGKGAYSKMKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPEA E++VDI +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PT +V EKSQ +N+ +AMKVLRAR+YD ++ E A RK +GSGDR Sbjct: 242 VRLTHLPTNTVVSCQDEKSQIKNKEKAMKVLRARVYDKFQREAQAEYDATRKQAVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+II+ L+ QA+ + ++ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKLDEIIDALVMEDQARRMEDSN 355 >gi|302339534|ref|YP_003804740.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293] gi|301636719|gb|ADK82146.1| peptide chain release factor 1 [Spirochaeta smaragdinae DSM 11293] Length = 355 Score = 278 bits (711), Expect = 9e-73, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 251/354 (70%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + +RF EIE R+ E ++ Y +L++E+AA+ + + Y + ++ Sbjct: 1 MIDKLESIASRFTEIEERLGEPDTMKDMHLYKELSQEHAALKDTVEEFGHYKELLSGIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E+R++A++E+ ++ + + E + LL+PKD D K+ I+EIRAGTG Sbjct: 61 TKQLL-ESESDHEMREMAEVELEELKDHLEKSEKRLKTLLVPKDPLDGKNTIIEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DL+RMY R++ + WK+E++ SSD + GG+KE++ +ISG+ V+ +++ESG Sbjct: 120 GDEASLFAADLYRMYSRFSEQKGWKLEMMESSDTEVGGFKEVIFSISGKEVYGNLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TE+ GR+HTSA TVAVLPEA + D+DI ED++ID R+SG GGQ VNTTD Sbjct: 180 VHRVQRVPSTESQGRIHTSAVTVAVLPEAEKTDIDISPEDLKIDVFRSSGPGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V EKSQ +N+ +A++VLRARLY+ E + ER RK QIGSG Sbjct: 240 SAVRVTHIPTGVVVTCQDEKSQLKNKAKALRVLRARLYEAEEMKQRKERDQARKSQIGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF Q R+TDHRINLTLYKL+ V++G ++++I+ L + +++ Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDQVMEGALNELIDALKLSITEELLKQ 353 >gi|146311983|ref|YP_001177057.1| peptide chain release factor 1 [Enterobacter sp. 638] gi|166977363|sp|A4WBC6|RF1_ENT38 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145318859|gb|ABP61006.1| bacterial peptide chain release factor 1 (bRF-1) [Enterobacter sp. 638] Length = 360 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAATIADQDRFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + E+E ++ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELQEAKARAEEMEQQLQVLLLPKDPDDERNAFVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+++ + GGYKE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSANEGEHGGYKEVIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPEVPEAELPDINPGDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGSRIRAAEIAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLT+Y+L+ +++G +D +I P++ +QA + + ++ Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEIMEGKLDSLIEPIVQEYQADQLAALAD 358 >gi|319942226|ref|ZP_08016542.1| peptide chain release factor 1 [Sutterella wadsworthensis 3_1_45B] gi|319804279|gb|EFW01171.1| peptide chain release factor 1 [Sutterella wadsworthensis 3_1_45B] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 230/354 (64%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R EI+ ++ ++ + L+ E I PI+ ++ Y++ + + Sbjct: 9 KLSALSRRLEEIDRMLAAPETAADMNLFRDLSRERGEIEPIVGRLHAYERAESDLAAAQE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E++ A E A E+ +E E+ LLPKD +DD++ LEIRAGTGG E Sbjct: 69 LAA----DPEMKAFAAEESAAATHELERIEQELRIALLPKDPNDDRNIFLEIRAGTGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +ALF GDL RMY RYA W+ E++S ++++ GGYKE++ I GRG +S++KFESG HR Sbjct: 125 SALFAGDLLRMYLRYAEGHGWQTEIVSKNESELGGYKEVIVRIIGRGAYSKLKFESGGHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAVLPE +V + D+RID RASG+GGQH+ TDSA Sbjct: 185 VQRVPATESQGRIHTSACTVAVLPELDEIEEVKLNPADLRIDVFRASGAGGQHIQKTDSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V E+SQ QN+ RAM VL +RLY + ++ RK IGSGDR Sbjct: 245 VRITHLPTGMVVECQDERSQTQNKARAMAVLASRLYAQQVAEQHEREASERKNLIGSGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ QGR+TDHRINLTLY+LE ++ G +++II L T HQA + + Sbjct: 305 SERIRTYNYPQGRVTDHRINLTLYRLEAIMNGDLEEIITALTTEHQAAALAELA 358 >gi|282859526|ref|ZP_06268631.1| peptide chain release factor 1 [Prevotella bivia JCVIHMP010] gi|282587754|gb|EFB92954.1| peptide chain release factor 1 [Prevotella bivia JCVIHMP010] Length = 370 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 216/361 (59%), Gaps = 13/361 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L+ RF E+ +++ + Y+KLT EY + I+ Y ++ Sbjct: 9 DKLDGLEARFEEVSTLITDPDVIGDQARYVKLTREYKDLGDIMDARKRYIACLSTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD +++++A+ E+ E +LE EI LL+PKD +D K+ +E+RAGTGG Sbjct: 69 DILA-NESDPDMKEMAREELSENETLQPKLEEEIKILLVPKDPEDAKNVQMEVRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GD+F MY+R+ + W + V ++ GG+KEI +SG GV+ +K+ESGVH Sbjct: 128 EAALFAGDIFNMYKRFCDKKGWTLSVTDVNEGAVGGFKEIDFAVSGDGVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+T+ GR+ TSAATVAVLPEA +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPSTDTQGRMQTSAATVAVLPEADRFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYVDDIANRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L + G I ++I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLPGFMNGNIQEMIDALTVAENAEKMKE 367 Query: 355 A 355 A Sbjct: 368 A 368 >gi|304397559|ref|ZP_07379436.1| peptide chain release factor 1 [Pantoea sp. aB] gi|304354731|gb|EFM19101.1| peptide chain release factor 1 [Pantoea sp. aB] Length = 360 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 162/361 (44%), Positives = 248/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + + L+ EYA ++ + + Q ++ Sbjct: 1 MKTSIVAKLEALQERHEEVEAMLGDAGVIADQERFRALSREYAQLTDVTRCFRDWQQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+RD+AQ E+ ++ LE ++ LLLPKD DD+++C +E+R Sbjct: 61 DIETAQQML----DDPEMRDMAQEELQEAREKNDVLEQQLQVLLLPKDPDDERACFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A ++G G + R+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYSRYAEARRWRVEIISANEGEHGGYKEVIARVTGDGAYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL +R++ E R ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVLGSRIHAAEMARRHAAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLT+Y+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRLDEVMEGKLDSLIEPIVQEYQADQLAAL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|227529623|ref|ZP_03959672.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540] gi|227350413|gb|EEJ40704.1| peptide chain release factor 1 [Lactobacillus vaginalis ATCC 49540] Length = 362 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 159/360 (44%), Positives = 240/360 (66%), Gaps = 6/360 (1%) Query: 1 MVFLSH-KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 M ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Sbjct: 1 MEMAEIFDKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKKVT 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 Q D ++ + + D ++ +L + E+ + + + +LE E+ LL+PKD +DDK+ I+EI Sbjct: 61 QTISDDEELLRE-SDDPDLTELTKDELSSAKDQQAKLEKELEILLIPKDPNDDKNIIMEI 119 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 R GG EA+LF DL+ MY YA + WKVEV+ S+ + GG+KEI I+G V+S++ Sbjct: 120 RGAAGGDEASLFAADLYNMYLHYAENQGWKVEVVDKSETEVGGFKEIALMITGDKVYSKL 179 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFE+G HRVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQH Sbjct: 180 KFENGAHRVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T SAVR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ + A RK Sbjct: 240 VNKTSSAVRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAYDAKRKD 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IG+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q K + Sbjct: 300 AIGTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDKIMSGDLDEIIEALIVADQTKKLEQL 359 >gi|167750775|ref|ZP_02422902.1| hypothetical protein EUBSIR_01753 [Eubacterium siraeum DSM 15702] gi|167656210|gb|EDS00340.1| hypothetical protein EUBSIR_01753 [Eubacterium siraeum DSM 15702] gi|291530723|emb|CBK96308.1| bacterial peptide chain release factor 1 (bRF-1) [Eubacterium siraeum 70/3] gi|291557765|emb|CBL34882.1| bacterial peptide chain release factor 1 (bRF-1) [Eubacterium siraeum V10Sc8a] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 154/356 (43%), Positives = 235/356 (66%), Gaps = 4/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + RF EI ++++ ++ Y L +E ++PII K +Y + + ++ Sbjct: 1 MTEKLEITEKRFDEINEKLTDINVINDQEQYKSLMKELKNLTPIIEKYRMYKTARSDFEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D + +++ Q + + +K + E +E+ LLLPKD DDD++ I+EIR G G Sbjct: 61 AEQMLSDGGLDKDFKEIVQEQYESNKKLMDEYTDELKILLLPKDPDDDRNVIIEIRGGAG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +FRMY YA + WK EV+SS+ + GGYKEI ++ G GV++++K+ESG Sbjct: 121 GEEAALFANSMFRMYSMYAQTKGWKTEVISSNPTELGGYKEISFSVEGEGVYAKLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+ TS TVAVLPE E+DV+I D+ T R+SG+GGQH+N T+ Sbjct: 181 VHRVQRVPETEAQGRIQTSTITVAVLPEVEEVDVEINPADLEFQTYRSSGAGGQHINKTE 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RI H PTG++V E+SQ++N+ +AMK+L ++LY+ + ++ +A RK+Q+G+G Sbjct: 241 SAIRIIHHPTGVVVECQEERSQYKNKDKAMKMLYSKLYEAKLNEQNSKIAAERKIQVGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ Q R+TDHRI LTLYKLE + G D++ + L A + + + Sbjct: 301 DRSERIRTYNYPQSRVTDHRIGLTLYKLEQFMNGDCDEVFDALAIADRTAKLAAGG 356 >gi|126653461|ref|ZP_01725557.1| peptide chain release factor 1 [Bacillus sp. B14905] gi|126589817|gb|EAZ83950.1| peptide chain release factor 1 [Bacillus sp. B14905] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 156/355 (43%), Positives = 238/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V+ KL ++E + I + Y K++ D Sbjct: 3 DRLQAVEDRYERLTELLSDPDIVNDSKKLREYSKEQSDIQETVDSYREYKNVKEQLVDTR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D ++ ++ + E ++ + ELE + LL+PKD +D+K+ I+EIR GG Sbjct: 63 EML-DSEKDPDMHEMVKEEFNLLKAQQEELEERLRILLIPKDPNDNKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY RYA + WK++++ ++ N GGYKE++ I+G+G +S+ KFE+G H Sbjct: 122 EANIFAGDLFRMYSRYAETQGWKIDIMEATPNPMGGYKEVIFMINGQGAYSKFKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATVA LPE E+DV+I +DIR+DT +SG+GGQ VNTT SA Sbjct: 182 RVQRVPATESQGRIHTSTATVACLPEVEEVDVEIHEKDIRVDTFASSGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V+ E+SQ +NR +AMK+LRAR+ D+ + E A RK +GSGDR Sbjct: 242 VRMTHLPTGVVVSMQDERSQIKNREKAMKILRARVADMYMQEAQKEIDATRKSAVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ QA + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGRLDEIIDTLILEEQASKLERLND 356 >gi|56552405|ref|YP_163244.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761553|ref|ZP_04759640.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753918|ref|YP_003226811.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|81598182|sp|Q5NMC7|RF1_ZYMMO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56543979|gb|AAV90133.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis ZM4] gi|241373861|gb|EER63394.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553281|gb|ACV76227.1| peptide chain release factor 1 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 184/360 (51%), Positives = 254/360 (70%), Gaps = 5/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M+ +S ++ + R E++ M+ + + L+ EY+ + P+ + ++E Sbjct: 1 MIAISPDRLAAIIARREELQAEMARPDLDSNRLVALSREYSEVEPVALAAENVGRLREEG 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L + D D E++ +A E+ A + + E E + LLP+D D++S ILEIRAG Sbjct: 61 ETLEAMTKD--DDPELQAMAVEELEANKTALAEAERALALSLLPRDAADERSAILEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDL RMY RYA W+VE++S+S + GGYKE+V +I+G GVF+R+KFE Sbjct: 119 TGGDEAALFGGDLLRMYSRYAEEHGWRVEMISASAAELGGYKEVVISITGAGVFARLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTSAATVAVLPEA E+DVDI D+RID R+SG GGQ VNT Sbjct: 179 SGVHRVQRVPVTESGGRIHTSAATVAVLPEAEEVDVDIDERDLRIDIFRSSGPGGQSVNT 238 Query: 240 TDSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+GI+V+ + KSQH+N+ +AMKVLRARLY+ ER+R+ +ER+ RK +G Sbjct: 239 TDSAVRITHIPSGIVVSQQDEKSQHKNKAKAMKVLRARLYERERERLHSERAGQRKSMVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF QGR+TDHRINLTL++L +L G +D++I+ L+ +A+ + S + Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLHRLPEILAGPGLDEVISALIAEDEAERLASLDD 358 >gi|331701218|ref|YP_004398177.1| peptide chain release factor 1 [Lactobacillus buchneri NRRL B-30929] gi|329128561|gb|AEB73114.1| Peptide chain release factor 1 [Lactobacillus buchneri NRRL B-30929] Length = 360 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 241/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E A + ++ Y + ++ D Sbjct: 6 DKLQSVVDRYDELNELISDPEVIADTQKFMKLSKEEADLRDTVAAFKKYQKVSKQLDDDK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++ + + E+ ++ E +LE+++ +LLPKD +DDK+ I+EI GG Sbjct: 66 EMLREKIDD-DLEAMVKDEITSLTDEKDKLEDQMKVMLLPKDPNDDKNIIMEIHGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E +LF DLF MY +YA + WKVE++ ++ + GG+KEIV I+G V+S++K+E+G H Sbjct: 125 EGSLFAADLFSMYSKYAERQGWKVEIIDKNETEVGGFKEIVLMITGDKVYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D+DI +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AMK+L+AR+YD ++ ++ +A RK IG+GDR Sbjct: 245 VRMTHLPTGIVVAMQDERSQQQNRQKAMKILKARVYDYYAQQEQDQYNAERKSAIGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ + QAK + + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIIDALIVSDQAKKLENL 357 >gi|148653259|ref|YP_001280352.1| peptide chain release factor 1 [Psychrobacter sp. PRwf-1] gi|172048528|sp|A5WFG1|RF1_PSYWF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148572343|gb|ABQ94402.1| bacterial peptide chain release factor 1 (bRF-1) [Psychrobacter sp. PRwf-1] Length = 364 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 169/361 (46%), Positives = 252/361 (69%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ + +RF E+ +S+ ++ + + +L+ E++ +S I + Y Q + Sbjct: 1 MKDSLRERLDQMVDRFEEVTALLSDPDTISDNNKFRELSMEHSELSEITALWQRYRQAEI 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +++D +I D SD +++++ Q E+ + ++I +E E+N ++LPKD +D LEIR Sbjct: 61 DKKDAQEMINDA-SDPDMKEMMQEEIDSASRDIEAMEEELNVMMLPKDPNDKVPAFLEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMYERYA+ + W +EVLS+++ + GGYKEI++ +SG V+ R+K Sbjct: 120 AGTGGDEAAIFSGDLFRMYERYASSQGWTIEVLSANEGEHGGYKEIISRVSGNDVYGRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE D ++ DIR+DT R+SG+GGQH Sbjct: 180 FESGAHRVQRVPETESQGRVHTSACTVAVMPEVEIDDTVELNPADIRMDTFRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+THIPTG++ E+SQH+NR +AM++L AR+ + + + A R+ Sbjct: 240 VNTTDSAVRLTHIPTGVVAECQQERSQHKNRAKAMQMLIARIQQAKVQEQVDTADALRRN 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G + ++++ L HQA ++ S Sbjct: 300 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAIMEGDLTELLDALNREHQADLMASI 359 Query: 356 S 356 Sbjct: 360 G 360 >gi|88657945|ref|YP_507408.1| peptide chain release factor 1 [Ehrlichia chaffeensis str. Arkansas] gi|119361539|sp|Q2GGM5|RF1_EHRCR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|88599402|gb|ABD44871.1| peptide chain release factor 1 [Ehrlichia chaffeensis str. Arkansas] Length = 359 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 182/357 (50%), Positives = 255/357 (71%), Gaps = 4/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +L +F +++ + + SVD+++ ++EY+ + P+IS I Y+ +++ Sbjct: 1 MSFDNSLEELSQKFYKLKSMLEDPSQLSVDSFVAASKEYSELLPVISVIDQYNILQKDIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 L +I + +D E++ LA+ E +K++ ++++++ LLPKD DD ++ ILEIRAGT Sbjct: 61 GLEELINNPETDHELKSLAKEEFYERQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WK E ++SS GG+KEI ISG VF+R+KFES Sbjct: 121 GGEEAALFVTDLYRMYTKYAEQKNWKFEQINSSSTGIGGHKEISLCISGSNVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+V EKSQH+N+ +A+KVLRARLY++E+++ E S RK QIGS Sbjct: 241 DSAVRITHIPSGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRDAEISQMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF Q RITDHRINLTLY+L+ ++ +G +D+ I L+ +A + + Sbjct: 301 GDRSERIRTYNFPQSRITDHRINLTLYRLDDIMKEGNLDEFIEALIAEDEANKLKNL 357 >gi|73662075|ref|YP_300856.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|119361617|sp|Q49Z65|RF1_STAS1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|72494590|dbj|BAE17911.1| peptide chain release factor 1 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 242/353 (68%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ K ++E A + + Y Q K++ ++ Sbjct: 3 DQLDIVEERYEQLNEMLSDPDVVNNPDNLRKYSKEQAELQKTVDVYRDYKQTKEDISEVE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D + EI L + K + LE E+ +LL+PKD +DDK I+EIRA GG Sbjct: 63 EMLRDTKDNDEIEMLKEEHQTLQNKVPK-LEEELKFLLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +YA +K +++ +++D GGYKEI ++SG G FS++K+E+G H Sbjct: 122 EAAIFAGDLFRMYSKYAETLNYKTDIVEVTESDHGGYKEISFSVSGNGAFSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE ++++++ ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTG++ TSSEKSQ QNR +A+KVL+ARL+D++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGVIATSSEKSQIQNREKALKVLKARLFDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL+ +++G +D+II+ L A Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLAEQTDKLKELN 354 >gi|224477106|ref|YP_002634712.1| peptide chain release factor 1 [Staphylococcus carnosus subsp. carnosus TM300] gi|254790897|sp|B9DMD1|RF1_STACT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|222421713|emb|CAL28527.1| peptide chain release factor 1 [Staphylococcus carnosus subsp. carnosus TM300] Length = 358 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V KL ++E + + + Y Q K++ ++ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVSDSNKLREYSKEQSDLQKTVDVYRQYKQNKEDIDEIV 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E D+ + ++ ++ + LE E+ LL+PKD +DDK+ ++EIRA GG Sbjct: 63 EMLSET-SDKEEVDMLKADMNELKDTLPGLEEELKMLLIPKDPNDDKNVVVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL+RMY R++ +K V+ +D+D GG+KEI TI+G+G +S++K+E+G H Sbjct: 122 EAAIFAGDLYRMYTRFSEGLGYKTGVIEMNDSDHGGFKEISFTINGQGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA +++VDI D++I+T R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEDVEVDIKDADLKIETYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTGI+ TSSEKSQ QNR +A+KVL+AR+YD++ + + + RK +G+GDRS Sbjct: 242 VRITHLPTGIIATSSEKSQIQNREKALKVLKARVYDMKLQEEQEKYDSERKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L + Q + + + Sbjct: 302 ERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGKLDEIIDALTMSEQTEKLKELN 354 >gi|58038522|ref|YP_190486.1| peptide chain release factor 1 [Gluconobacter oxydans 621H] gi|81557234|sp|Q5FUR9|RF1_GLUOX RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|58000936|gb|AAW59830.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Gluconobacter oxydans 621H] Length = 353 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 247/356 (69%), Gaps = 6/356 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E++ MS + + +L++EYA + P+++ I + ++++ Sbjct: 1 MAFDDRLERIVARSEEVQALMSSGELTGEDFTRLSQEYAELEPVVASIQAWKSAEEQKAG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+R+LAQ+E+ IE + +L++ + LLPKD D++S ILEIR G Sbjct: 61 AQALL----DDPEMRELAQMELAEIEATLPDLQHALRLALLPKDAADERSAILEIRPAAG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF +LF Y R++ W+ EV+ ++N+ G KE +ATISGR VF+R+K+ESG Sbjct: 117 GDEAGLFAAELFDAYRRFSEQNGWRFEVMEYAENEVAGLKEGMATISGRSVFARLKYESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE+ GR+HTS TVAVLPEA E+DV + +D+RID RASG+GGQHVN T+ Sbjct: 177 VHRVQRVPATESQGRIHTSTVTVAVLPEAEEVDVTVNDDDLRIDVYRASGAGGQHVNKTE 236 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+P+GI+V EKSQH+N+ +AMK+LRARLY+ ER ++ R+A+RK Q+G+G Sbjct: 237 SAVRVTHMPSGIVVAMQEEKSQHKNKAKAMKILRARLYERERAQLHATRAADRKSQVGTG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTLYK++ ++ G D+II+ L Q +++ + Sbjct: 297 DRSERIRTYNFPQGRVTDHRINLTLYKIDRIMGGEFDEIIDALTREEQTELLAAEG 352 >gi|300920409|ref|ZP_07136843.1| peptide chain release factor 1 [Escherichia coli MS 115-1] gi|300412542|gb|EFJ95852.1| peptide chain release factor 1 [Escherichia coli MS 115-1] Length = 360 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+ E++S+S+ GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRGEIMSASEGGHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|224538310|ref|ZP_03678849.1| hypothetical protein BACCELL_03201 [Bacteroides cellulosilyticus DSM 14838] gi|224520095|gb|EEF89200.1| hypothetical protein BACCELL_03201 [Bacteroides cellulosilyticus DSM 14838] Length = 370 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 224/362 (61%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMEARKEYIQVLNGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D E+R++A+ E+ A + ELE I LL+P D D K+ ILEIR GTGG Sbjct: 69 EIIS-NEADPEMREMAREELDACQARQPELEEHIKLLLVPADPQDSKNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + W++E+ S ++ GG+KE++ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCETKGWRMEISSVNEGAAGGFKEVICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYVWRNPNTGASEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYLDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|254282871|ref|ZP_04957839.1| peptide chain release factor 1 [gamma proteobacterium NOR51-B] gi|219679074|gb|EED35423.1| peptide chain release factor 1 [gamma proteobacterium NOR51-B] Length = 360 Score = 278 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L++R E+ + ++ + + L++E++ + ++ Y + + Sbjct: 1 MKASLVSKLEQLRDRHEEVSAMLGDADVISDQNQFRDLSKEFSQLDEVVRVFEAYQRCQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD E++ +A+ E+ A E E+ +E ++ LLLP+D D ++ LEIR Sbjct: 61 DLSEAREMLKD--SDPEMQSMARDELDAGEPELAAMEEKLQLLLLPRDPRDSQNVYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY+RY+ R W++EV+S + GG+KEI++ I G +++ +K Sbjct: 119 AGTGGDEAAIFAGDLFRMYQRYSESRGWRIEVISERPGEHGGFKEIISRIQGDDIYAHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA+LPE D++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAILPEPDAVEDIEINKADLRVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+P+GI+V E+SQH+NR RAM +L+A+L ++ A E++ R+ Sbjct: 239 VNTTDSAVRITHLPSGIVVECQDERSQHKNRARAMSLLQAKLASASEQQAAAEQAEERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGR++DHRINLTLYKL+ V++G +D +I PL +QA ++ + Sbjct: 299 LVGTGDRSDRIRTYNFPQGRVSDHRINLTLYKLDEVIEGDLDALIQPLRREYQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|325291372|ref|YP_004267553.1| bacterial peptide chain release factor 1 (bRF-1) [Syntrophobotulus glycolicus DSM 8271] gi|324966773|gb|ADY57552.1| bacterial peptide chain release factor 1 (bRF-1) [Syntrophobotulus glycolicus DSM 8271] Length = 356 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 172/352 (48%), Positives = 243/352 (69%), Gaps = 5/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++ ++ EI +S Y K + AAI+ I+ Y + ++ +D Sbjct: 4 RLEEIEKKYDEITELLSNPEIFSDQAAYQKNAKAQAAIAEIVEGFREYKEIFRQLKDAQA 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + DSE+R+ AQ E+ ++ E E ++ LLLPKD +D+K+ I+EIRAG GG E Sbjct: 64 LL-EEELDSEMREFAQSEIDELQNRKEEYEEKLKILLLPKDPNDEKNVIMEIRAGAGGEE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDL++MY RYA + WK E+LS+S D GG+KEI+ + GRG +S +K+ESGVHR Sbjct: 123 AALFAGDLYKMYSRYAEEQGWKTEMLSASYTDIGGFKEIIFMVEGRGAYSMLKYESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P+TE+ GR+HTS ATVAVLPEA ++D++I +IRID +SG GGQ VNTT SAV Sbjct: 183 VQRIPSTESGGRIHTSTATVAVLPEAEDVDIEINPNEIRIDIFCSSGPGGQSVNTTQSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V EKSQH+N+ +A+KVLRARL + ++ E + RK Q+G+GDRS Sbjct: 243 RVTHIPTGIVVSCQDEKSQHKNKDKALKVLRARLLEKAQQEAMGEIAQERKSQVGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ERIRTYNF QGR++DHRI LTL+KLE +L G I +II+ L+ Q + + SA Sbjct: 303 ERIRTYNFPQGRVSDHRIGLTLHKLENILLGDIQEIIDALIAKDQEERLKSA 354 >gi|330994789|ref|ZP_08318711.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1] gi|329758050|gb|EGG74572.1| Peptide chain release factor 1 [Gluconacetobacter sp. SXCC-1] Length = 353 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 171/348 (49%), Positives = 245/348 (70%), Gaps = 5/348 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 ++ + R E++ ++E S + + + EYA + PI+++++ ++ E+D ++ Sbjct: 7 RLDRIVARCDELQALLAEGLSGADFSQASREYAELEPIVARVNALRAAEEAERDASQMLA 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E+R+LAQ E+ A+ +I L ++I +LP+D D++S ILEIR GG EA L Sbjct: 67 ----DPEMRELAQAELDALRTQIPTLRHDIRLAMLPRDEADERSAILEIRPAAGGDEAGL 122 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F +LF Y+RYA LR W+ EVL ++ GG +E +A+I+GRGVF+R+K+ESGVHRVQR Sbjct: 123 FAAELFGAYQRYADLRGWRFEVLEYDQSELGGLREGIASITGRGVFARLKYESGVHRVQR 182 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VPATE+ GR+HTS TVAVLPEA E+DV++ D+RID RASG+GGQHVN T+SAVRIT Sbjct: 183 VPATESQGRIHTSTVTVAVLPEAEEVDVEVNEGDLRIDVYRASGAGGQHVNKTESAVRIT 242 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PT I+V EKSQH+NR +AMK+LRARLY+ R R+A+R+ Q+G+GDRSERI Sbjct: 243 HLPTNIVVAMQEEKSQHKNRAKAMKILRARLYERNRAAAHETRAADRRAQVGTGDRSERI 302 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RTYNF QGR+TDHRI LTLYK++ V+ G +D+ ++ L QA ++ + Sbjct: 303 RTYNFPQGRVTDHRIGLTLYKIDRVMAGELDEFVDALTQEEQAALLAA 350 >gi|308186585|ref|YP_003930716.1| Peptide chain release factor 1 (RF-1) [Pantoea vagans C9-1] gi|308057095|gb|ADO09267.1| Peptide chain release factor 1 (RF-1) [Pantoea vagans C9-1] Length = 360 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 163/361 (45%), Positives = 248/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + + L+ EYA ++ + + Q ++ Sbjct: 1 MKTSIVAKLEALQERHEEVEAMLGDAGVIADQERFRALSREYAQLTDVTRCFRDWQQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+RD+AQ E+ ++ LE ++ LLLPKD DD+++C +E+R Sbjct: 61 DIETAQQML----DDPEMRDMAQEELQEAREKSDVLEQQLQVLLLPKDPDDERACFIEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A ++G G + RMK Sbjct: 117 AGTGGDEAAIFAGDLFRMYSRYAEARRWRVEIVSANEGEHGGYKEVIARVTGDGAYGRMK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAELPEINAGDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL +R++ E R ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALAVLGSRIHAAEMARRHAAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLT+Y+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTIYRLDEVMEGKLDSLIEPIVQEYQADQLAAL 356 Query: 356 S 356 + Sbjct: 357 A 357 >gi|225575054|ref|ZP_03783664.1| hypothetical protein RUMHYD_03143 [Blautia hydrogenotrophica DSM 10507] gi|225037724|gb|EEG47970.1| hypothetical protein RUMHYD_03143 [Blautia hydrogenotrophica DSM 10507] Length = 357 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 238/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF E+ + E D + KL E + + PI+ Y + +Q QD Sbjct: 3 DKLEDLLIRFEEVLSELGEPGVADNQERFQKLMREQSELQPIVDTYKEYKENQQTIQDSV 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + + + L + A + LENE+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 SMLEEESDEEMREMLKEELSDAKRRVGE-LENELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY +YA R+WK E+LS ++N GG+KE+ I G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYVKYAESRRWKTEMLSLNENGIGGFKEVTFMIQGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVA++PEA EID + L D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAIMPEAEEIDFHLDLNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLR+RLY++E ++ + + R+ Q+G+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKALKVLRSRLYEMELQKQHDAEAEARRSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYNF QGR+TDHRI LTL++LE L G +D++I+ L+ A QA + + Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHRLEGTLNGDLDEVIDSLIAADQAAKLSNL 354 >gi|163756580|ref|ZP_02163692.1| peptide chain release factor 1 [Kordia algicida OT-1] gi|161323474|gb|EDP94811.1| peptide chain release factor 1 [Kordia algicida OT-1] Length = 357 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 156/357 (43%), Positives = 230/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + Y++L +EY + ++ K +Y + + Sbjct: 1 MLEKLQIVKQRFDEVNDLIIQPDIIADQKRYVQLNKEYKDLKILVEKRDVYKELLDNISE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A+I++ + + LE EI LL+PKD +D K+ ++E+RAGTG Sbjct: 61 AEEIIAD-GSDAEMVEMAKIQMDEAKAALPALEEEIKVLLIPKDPEDSKNVVVEVRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL RMY +Y R W V V+ S+ GG+KEI+ +SG V+ MKFE+G Sbjct: 120 GDEASIFAGDLHRMYTKYCEGRGWNVSVVDYSEGTSGGFKEIIFEVSGEDVYGTMKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV++ + D+RI+ ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVELDMNDVRIERTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+R+ H P+G++V +KS H+N +A+KVLR+RLY+ E ++ SA RK + SG Sbjct: 240 SAIRLHHGPSGLVVSCQDQKSSHKNLEKALKVLRSRLYEKELEKKLAADSARRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRI LTLY L ++ G I II+ L+ + + +SE Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLSNIMNGDIQKIIDELMLVENTEKLKESSE 356 >gi|313203258|ref|YP_004041915.1| bacterial peptide chain release factor 1 (brf-1) [Paludibacter propionicigenes WB4] gi|312442574|gb|ADQ78930.1| bacterial peptide chain release factor 1 (bRF-1) [Paludibacter propionicigenes WB4] Length = 361 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 235/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+++F EI +++ + ++KL +EY + I++ + Y+ + Sbjct: 8 EKLEGLQHKFEEISTLITDPSVITDQKRFVKLNKEYHDLEMILNAKNEYEMALAHLAEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R++A+ EV +IE I E+E I LL+P D +D+K+ I+EIR GTGG Sbjct: 68 ELL-DTESDPEMREMAKAEVDSIEPIIPEMEENIKLLLIPADPEDNKNAIVEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLF+MY +Y + W++E+ + S+ GGYKEI+ T++G V+ +K+ESGVH Sbjct: 127 EAAIFAGDLFKMYTKYCETKGWRLEITNISEGTAGGYKEIIFTVTGENVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTSAATVAVLPE E D ++ D+R+DT +SG+GGQ VNTT SA Sbjct: 187 RVQRVPQTETQGRVHTSAATVAVLPEMEEFDYELKESDVRVDTFCSSGAGGQSVNTTYSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+ HIPTG V EKSQH+N+ +AM LR+RLY +E ++ +E + RK + +GDR Sbjct: 247 IRLVHIPTGTTVQCQDEKSQHKNKAKAMNELRSRLYAIEHQKYLDEIGSKRKTMVSTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S +IRTYN+ QGRITDHRIN T+Y L + G I +I+ L+ A A+ + + Sbjct: 307 SAKIRTYNYPQGRITDHRINFTIYNLSAFMGGDIQGVIDQLIVAENAERLKESE 360 >gi|297184082|gb|ADI20201.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 360 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 160/361 (44%), Positives = 239/361 (66%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M + ++ + R+ E+ + + + Y++L EY + P++ S Y + Sbjct: 1 MAMI--DKLNVIFQRYNEVNDLIIQPDVISDSKRYVQLNREYKNLKPLVEVRSQYLELSS 58 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ V+ + D++ R++A++E+ +E LE E+ LLLPKD +DDK+ ++EIR Sbjct: 59 RIEEAKGVLKEEK-DADFREMAKMELDELEPTFEALEEEVKLLLLPKDPEDDKNALVEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG E A+F GDLFRMY+RY R WKV VL+ ++ GG+KE+ ++G V+ +K Sbjct: 118 QGAGGDEGAIFAGDLFRMYQRYCEGRGWKVAVLTMNEGSSGGFKEVSFEVNGESVYGILK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVPATE+ GRVHTSAA+V VLPEA E+DVD+ ++D++ DT R+ G+GGQHV Sbjct: 178 YESGVHRVQRVPATESQGRVHTSAASVVVLPEAEEVDVDLDMKDVKKDTYRSQGAGGQHV 237 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVR+TH+PTGI+V +SQH+N +A+KVLR+R++D+E K+ E++A RK Sbjct: 238 NKTESAVRLTHLPTGIVVECQDGRSQHKNYEQALKVLRSRMFDMEFKKKQEEQAAQRKTM 297 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + +GDRS +IRTYN+ QGR+TDHRI LT Y L V+ G I I+ L A A+ + S Sbjct: 298 VSTGDRSAKIRTYNYPQGRVTDHRIGLTSYNLNDVVNGDIQKFIDELHMAENAEKMKEGS 357 Query: 357 E 357 + Sbjct: 358 D 358 >gi|281420644|ref|ZP_06251643.1| peptide chain release factor 1 [Prevotella copri DSM 18205] gi|281405417|gb|EFB36097.1| peptide chain release factor 1 [Prevotella copri DSM 18205] Length = 369 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 217/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++R+ E+ +++ + Y+KLT+E+ + I+ Y ++ Sbjct: 8 QKLEGLESRYEEVSTLITDPDVIADQPRYVKLTKEWKDLGDIMDARKRYINCLNSIKEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E++++A+ E+ E +LE EI L+PKD +D K+ +EIR G GG Sbjct: 68 DILA-NESDPEMKEMAREELNENEALQPKLEEEIKIALVPKDPEDAKNVQMEIRGGAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++Y + W V V S S+ GGYKEI +SG V+ +K+ESGVH Sbjct: 127 EAALFAGDLFNMYKKYCESKGWTVSVTSVSEGAVGGYKEIDFAVSGTDVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L ++D E ++ ++ ++ RK Sbjct: 247 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTFIHDREHQKYVDDIASRRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L L G I D+I+ L A A+ + Sbjct: 307 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLNGFLAGDIQDMIDALTVAENAEKLKE 366 >gi|124265716|ref|YP_001019720.1| peptide chain release factor 1 [Methylibium petroleiphilum PM1] gi|166223569|sp|A2SD46|RF1_METPP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|124258491|gb|ABM93485.1| bacterial peptide chain release factor 1 (bRF-1) [Methylibium petroleiphilum PM1] Length = 359 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 168/361 (46%), Positives = 233/361 (64%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R AE++ +++ + + L+ E+ +S I+ + + Q+++ Sbjct: 1 MKPALRLQLDRYVRRLAELDSLLADPAVMRDAGGFRALSREHVEVSGIVERQRRHAQRER 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + SD E+ +A E + + E+ L E+ LLLP+D DD +S LEIR Sbjct: 61 DLAAAAEMA----SDPELAAMAAEEAASAQAELDRLATELQRLLLPRDPDDARSVFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA + W+VE+LS+SD++ GGYKE+VA I G VF +K Sbjct: 117 AGTGGDESALFAGDLLRMYTRYAERKGWRVELLSASDSELGGYKEVVARIEGDAVFGHLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 +ESG HRVQRVPATE GR+HTSA TVAVL +V + D+RIDT RASG+GGQH Sbjct: 177 YESGGHRVQRVPATETQGRIHTSACTVAVLAEPDEAQEVTLNPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITH+PTG++ ++SQH+N+ +AM VL ARL D +R +A RK Sbjct: 237 VNKTDSAVRITHLPTGLVAECQDDRSQHRNKAKAMAVLAARLRDKDRLERQAREAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLY+L ++ G +D ++ L+ A +A+++ Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYQLGAIMDGDLDPVVKALVAAREAELLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|254482800|ref|ZP_05096037.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2148] gi|214036881|gb|EEB77551.1| peptide chain release factor 1 [marine gamma proteobacterium HTCC2148] Length = 361 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 242/361 (67%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ + ++ ++ D + L+ EY+ + ++ + Y Q K Sbjct: 1 MKASLLTKLETLTDRHEEVSALLGDNETISDQDKFRDLSREYSELEAVVRCYADYSQVKG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++AQ E+ + + +LE ++ LLLP+D +D + LEIR Sbjct: 61 DLDEARLMLED--SDPDLREMAQEEIDSGSGRLEQLEAQLQALLLPRDPNDSHNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA WKVEVLS + GGYKEI+ + GR V++ +K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAENMGWKVEVLSERHGEHGGYKEIITRVEGRDVYAHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PEA +D +I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAIMPEAEAVDQVEINKADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+P+GI+V E+SQH+NR RAM +L+A+L + + A E++ R+ Sbjct: 239 VNKTDSAVRLTHLPSGIVVECQDERSQHKNRARAMSLLQAKLLTSAQDKAAEEQAEQRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGR+TDHRINLTLYKL V++G + ++ PL +QA + + Sbjct: 299 LVGTGDRSDRIRTYNFPQGRLTDHRINLTLYKLAEVVEGDLGAVVGPLRQEYQADQLAAL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|317473032|ref|ZP_07932332.1| peptide chain release factor 1 protein [Anaerostipes sp. 3_2_56FAA] gi|316899461|gb|EFV21475.1| peptide chain release factor 1 protein [Anaerostipes sp. 3_2_56FAA] Length = 357 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 248/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L R + ++++ + + L +E + ++PI+ K Y Q+KQ ++ Sbjct: 3 DKLESLVERLDTVLQQLNDPDVAGDQNRFRDLMKEQSDLAPIVEKYKEYVQEKQNIEESL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+++LA+ E+ + + LE E+ LL+PKD +DDK+ I+EIRAG GG Sbjct: 63 E-LLEEESDEEMKELAKEELSESKANVERLEEELKILLIPKDPNDDKNIIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D+ RMY YA R+WKVE LS +++ GG+KE+V ISG+G +SR K+ESGVH Sbjct: 122 EAALFAADVARMYRSYAEGRRWKVETLSFNESGIGGFKELVFMISGQGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVA++PE +++V++ L D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSTITVAIMPEVEDVEVEVDLNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V EKSQ +N+ +A+KVLR+RLY++E+++ + + RK Q+G+GDR Sbjct: 242 VRLTHLPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELEQQKAHDAEAEKRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ QGR+TDHRI LTL+KL+ V+ G +D++I+ L A QA + + E Sbjct: 302 SEKIRTYNYPQGRVTDHRIKLTLHKLDSVMNGDLDELIDSLTAADQAAKLSNMEE 356 >gi|144897745|emb|CAM74609.1| peptide chain release factor RF-1 [Magnetospirillum gryphiswaldense MSR-1] Length = 352 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 178/357 (49%), Positives = 255/357 (71%), Gaps = 7/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 Q+ + R+ E+ +++ + +L++E++ I P++ + + + + + Sbjct: 1 MTLDAQLDKVLYRYDELREQLAAGDGGS-FARLSKEFSDIEPVVHAVQALKKARADMAEA 59 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +++DLA E A+++ + LE ++ +LLPKD D+K+ ILE+RAGTGG Sbjct: 60 EAMMA----DPDMKDLAAEEYYALKETLPGLERDVQLMLLPKDEADEKNAILEVRAGTGG 115 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +LFRMYERYA++R W+ EV+ ++ GG KE ATI+GRGVF+R+KFESGV Sbjct: 116 EEAALFAAELFRMYERYASVRGWRFEVMDVNETGIGGMKEASATITGRGVFARLKFESGV 175 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTSAATVA++PEA E+D+ I +D+R D R+ GSGGQ VNTTDS Sbjct: 176 HRVQRVPATESGGRIHTSAATVAIMPEAEEVDIQIDDKDLRFDVYRSQGSGGQSVNTTDS 235 Query: 243 AVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+THIPTG+ + EKSQH+N+ AMK+LRARLY++ER A ER+ANRK Q+GSGD Sbjct: 236 AVRVTHIPTGLAVACQQEKSQHKNKATAMKLLRARLYEMERASKAAERAANRKSQVGSGD 295 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRINLTLYK++ ++ G +D++ + L+ A QA+ + +E Sbjct: 296 RSERIRTYNFPQGRVTDHRINLTLYKIDDMMNGTALDEVADALIAADQAERLAEMAE 352 >gi|254515300|ref|ZP_05127361.1| peptide chain release factor 1 [gamma proteobacterium NOR5-3] gi|219677543|gb|EED33908.1| peptide chain release factor 1 [gamma proteobacterium NOR5-3] Length = 361 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 163/361 (45%), Positives = 233/361 (64%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + + + D + +L+ EY+ + ++ Y Sbjct: 1 MKPSLLLKLETLSERHEEVSALLGDPGVIADQDQFRQLSREYSELETVVKCFGEYQALLG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +++ D D+++R++A+ E+ E LE E+ LLLP+D D + LEIR Sbjct: 61 DIEAAQSMLAD--DDADMREMAKAEISEGEARREALEAELQVLLLPRDPRDSHNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL RMY R+A + W++EVLS + GGYKEI++ I G V++ +K Sbjct: 119 AGTGGDEAAIFSGDLQRMYTRFAERQGWRLEVLSERPGEHGGYKEIISRIEGTDVYAYLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA+L E E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAILAEPEELEAIEINKADLRVDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V E+SQH+NR RAM +L+A+L A+E++ R+ Sbjct: 239 VNKTDSAVRLTHLPTGIVVECQDERSQHKNRARAMSLLQAKLTSSAEAAQASEQAEQRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGR+TDHRINLTLYKL+ V+ G + I+ PL HQA + + Sbjct: 299 LVGTGDRSDRIRTYNFPQGRVTDHRINLTLYKLDEVMAGDMVSIVGPLRQEHQADQLAAM 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|157803730|ref|YP_001492279.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel] gi|166223597|sp|A8EYR1|RF1_RICCK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157784993|gb|ABV73494.1| peptide chain release factor 1 [Rickettsia canadensis str. McKiel] Length = 355 Score = 277 bits (709), Expect = 1e-72, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 246/354 (69%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + ++ KI Y++ K E ++ Sbjct: 1 MSFSDNLAKIVDKYENLGKKLSSGIMGDEFVKASKEYAELEEVVEKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDEADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W E+L+ D GGYKE A+I G+ VFS++K ESGV Sbjct: 121 EEAALFAAILFNMYQRYAELKGWHFEILAIVDTGIGGYKEASASIKGKDVFSKLKCESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQR+P TE+ GR+HTSAATVAVLPE ++D+ + +D+RIDT R+SG+GGQHVNTT+S Sbjct: 181 HRVQRIPETESHGRIHTSAATVAVLPEVEDVDIKLEDKDLRIDTYRSSGAGGQHVNTTNS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ +R+ NR+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQKRANNRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ ++ L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVDALIADDEAKKLAE 354 >gi|206901386|ref|YP_002250520.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12] gi|226739102|sp|B5YDB2|RF1_DICT6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|206740489|gb|ACI19547.1| peptide chain release factor 1 [Dictyoglomus thermophilum H-6-12] Length = 367 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 180/355 (50%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++ RF EIE +++ + Y L +E A I I+ K S Y + +E +DL Sbjct: 8 DKLEEIEKRFKEIENLLTKEEIISDLSRYQSLLKERAKIEEIVEKFSEYKKLLKEREDLE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D ++R LA+ E+ IEK++ ++E ++ LLLPKD +D+K+ I+EIRAGTGG Sbjct: 68 VMTKEE-QDEDLRSLAEAELEEIEKKLEKIEFDLKALLLPKDPNDEKNIIMEIRAGTGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY YA + WKVE++SS+ GGYKEI+ + G+G +SR+KFESGVH Sbjct: 127 EAALFAADLFRMYVGYAQKKGWKVEIVSSNPTGLGGYKEIIFIVEGKGAYSRLKFESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPE E+DV+I +D+RI+T R+ G+GGQHVN T+S Sbjct: 187 RVQRVPITESSGRIHTSTATVAVLPEMEEVDVEIDPKDLRIETFRSGGAGGQHVNKTESG 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIP+GI+V E+SQHQNR +AMKVLRARLY+ ++ NE ++ R+ Q+G+G+R Sbjct: 247 VRITHIPSGIVVQCQDERSQHQNREKAMKVLRARLYEYYQREKENEIASQRRQQVGTGER 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q R+TDHRIN + ++LE VL G +D+ I+ L+ A + + I E Sbjct: 307 SEKIRTYNFPQRRVTDHRINYSSFQLEEVLSGELDEFIDRLILAEKEEQIKKLFE 361 >gi|290580477|ref|YP_003484869.1| putative peptide chain release factor 1 [Streptococcus mutans NN2025] gi|254997376|dbj|BAH87977.1| putative peptide chain release factor 1 [Streptococcus mutans NN2025] Length = 359 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++KL+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDIVSDTKCFMKLSREEANSRETVAVYREYKQVVQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ +LLLPKD +DDK+ ILEIR Sbjct: 61 ADAQEMIKDASDDPELEEMAKEELKNSKVAKEEYEEKLKFLLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + WK EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELN 358 >gi|297180646|gb|ADI16856.1| protein chain release factor a [uncultured alpha proteobacterium HF0010_13E22] Length = 359 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 184/359 (51%), Positives = 250/359 (69%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + + R E+E ++++ S+ D L+ E + + P+ +I + + + + Sbjct: 1 MSIEQSMDKVLARRDEVESWLADAASMSPDELASLSRELSELRPVCEQIDLVRRLEGDRD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D+E+ ++AQ E+ IE + E N + LLLP+D DD ++ ILE+RAGT Sbjct: 61 AAVMLAEEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLLLPRDRDDSRNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF MY+R+AA W+ EV+ S+ GGYKE A I+G VF+R+KFES Sbjct: 121 GGDEAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA ++D+D+ D+RID RASG GGQ VNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQDSDLRIDVFRASGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V+ + KSQH+NR +AMK+LRARLYD ER R+ ER+A+RK Q+GS Sbjct: 241 DSAVRITHIPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+++ L+ +A+ + E Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDRAQRLAEGGE 359 >gi|315641825|ref|ZP_07896829.1| peptide chain release factor RF1 [Enterococcus italicus DSM 15952] gi|315482500|gb|EFU73039.1| peptide chain release factor RF1 [Enterococcus italicus DSM 15952] Length = 357 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 169/353 (47%), Positives = 241/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ + +R+ E+ +S+ V +++L++E A ++ Y + Q D Sbjct: 3 DQLQAIADRYEELGELLSDPAVVSDTKRFMELSKEEANTRETVATYRRYKEVVQGIADAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ N D+E+ +LA+ E+ ++KE LE+ I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLGE-NLDAEMAELAKEELSDLKKEKEVLEDTIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RYA + W+VEV+ ++ GGYKE++ I+G VFS++K+ESG H Sbjct: 122 EAALFAGDLFNMYQRYAESQGWRVEVMDANITGIGGYKEVIMMITGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++D+ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVELDLADKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD + +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQLQHEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEL 354 >gi|237807596|ref|YP_002892036.1| peptide chain release factor 1 [Tolumonas auensis DSM 9187] gi|259585258|sp|C4LBL5|RF1_TOLAT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|237499857|gb|ACQ92450.1| peptide chain release factor 1 [Tolumonas auensis DSM 9187] Length = 362 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 239/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R+ E++ + E V D + LT EY+ + +++ Y Q + Sbjct: 1 MKETVIRKLEGLMERYEEVQALLGEPNVVSDQDKFRALTREYSQLGEVVAGFQQYQQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + ++ D+E++ +AQ E+ ++ I +E E+ LLLPKD DD +C LEIR Sbjct: 61 DLQAIEEMLS--GDDAEMKAMAQEELAEAKQLIERVEAELQVLLLPKDPKDDSNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY +Y+ R W++E++S+SD + GGYKEI+ + G V+ MK Sbjct: 119 AGAGGDEAAIFAGDLFRMYSKYSERRGWRMEIMSTSDGEHGGYKEIIVRMEGDSVYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + +I D+RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVMVLPEIPEKEIPEINPADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITHIPTG +V E+SQH+N+ RAM VL ARL E + E + R+ Sbjct: 239 INKTDSAIRITHIPTGTVVECQDERSQHKNKARAMSVLAARLAQQEEDKRRAEADSTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS+RIRTYN+ QGR++DHRINLTLY+L V++G +D ++ PL +QA + + Sbjct: 299 ILSTGDRSDRIRTYNYPQGRVSDHRINLTLYRLSEVMEGDLDSLLKPLQQEYQADQLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|300770142|ref|ZP_07080021.1| peptide chain release factor RF1 [Sphingobacterium spiritivorum ATCC 33861] gi|300762618|gb|EFK59435.1| peptide chain release factor RF1 [Sphingobacterium spiritivorum ATCC 33861] Length = 364 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 149/357 (41%), Positives = 227/357 (63%), Gaps = 5/357 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 ++ +K R+ E+E +S ++ + KL +EY +S I+ + IY Sbjct: 5 FDFMLDKLQAIKERWQEVEAELSNPDTISDMKRFAKLNKEYKDLSKIVDQYHIYKNMVSN 64 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ + D E+R++A+ E+ + + E E EI +L+PKD +D K+ I+EIR Sbjct: 65 IDANKDILA-NEKDQELREMAKEELDILYGQKEEKEEEIRLMLIPKDPEDAKNAIIEIRG 123 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EAALF GDL+RMY R+ + W+ EV+ ++ GGYKE++ + G V+ ++K+ Sbjct: 124 GTGGDEAALFAGDLYRMYTRFFETKGWRNEVMDVTEGTSGGYKEVILKVIGEDVYGQLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESGVHRVQRVP TE GRVHTSAA+VAVLPEA ++DV++ DI + T R+ G+GGQ+VN Sbjct: 184 ESGVHRVQRVPDTETQGRVHTSAASVAVLPEAEDVDVELNPGDIEMQTSRSGGAGGQNVN 243 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 ++ V++TH P+GI+V E+SQ NR AM++LR +LY++E ++ + +A RK + Sbjct: 244 KVETKVQLTHKPSGIVVVCQVERSQLANRELAMEMLRNKLYELEVQKKHGDIAAKRKTMV 303 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +GDRS ++RTYN+ QGR+T+HRI LTLY L V+ G I II+ L A A+ + Sbjct: 304 STGDRSAKVRTYNYPQGRVTEHRIGLTLYNLPAVMDGDIQGIIDALQFAENAEKMKE 360 >gi|15604386|ref|NP_220902.1| peptide chain release factor 1 [Rickettsia prowazekii str. Madrid E] gi|6225942|sp|Q9ZD21|RF1_RICPR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|3861078|emb|CAA14978.1| PEPTIDE CHAIN RELEASE FACTOR 1 (prfA) [Rickettsia prowazekii] gi|292572142|gb|ADE30057.1| Peptide chain release factor RF-1 [Rickettsia prowazekii Rp22] Length = 355 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 247/355 (69%), Gaps = 2/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + ++ KI Y++ K E ++ Sbjct: 1 MSFSDNLVKILDKYENLGKKLSSGIIGDEFVKASKEYAELEDVVVKIKQYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFRLEMALDNATLEMIDNEIHTLENLLPKLERAVRISLLPKDEADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RY+ + W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYSEFKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQR+P TE+ GR+HTSAATVAVLPEA ID+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRIPETESQGRIHTSAATVAVLPEAEGIDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRARLY+ +R++ ERS +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARLYEEKRRQKEQERSDSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQ-GYIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF QGR++DHRINLTLYK++ V++ G +D+ I L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKHGQLDEFIEALIANDEAKKLSEL 355 >gi|260655567|ref|ZP_05861055.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1] gi|260630015|gb|EEX48209.1| peptide chain release factor 1 [Jonquetella anthropi E3_33 E1] Length = 361 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 250/356 (70%), Gaps = 6/356 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDL 62 K++ +++ + EIE +M + + L +++A + P++ Y Q + + Sbjct: 7 QKRLAEIEQAYREIEAKMGDPAVASNVKEMGVLGKKHADLQPVVELWQEYRQVEAGLAEA 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + + D+E+ +LA+ E + K + E+E E++ LLPKD +D+K I+EIRAGTGG Sbjct: 67 KSL--EDSEDAEMAELAKEEAASAVKRLEEIEAELHRQLLPKDPNDEKDVIVEIRAGTGG 124 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF DL+RMY R+ W+ E++ ++ + GGYKEIV + G G +S++KFESGV Sbjct: 125 DEASLFAADLYRMYSRFVEREGWRSEIVEENETEVGGYKEIVFQVKGAGAYSKLKFESGV 184 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATEASGR+HTSAATVAV+P+A +++++I ED+ IDT R+SG+GGQHVN TDS Sbjct: 185 HRVQRVPATEASGRIHTSAATVAVMPQAEDVEIEIRPEDLDIDTYRSSGAGGQHVNMTDS 244 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTG++V E+SQ +NR +AM VLRARLYD+E ++ +E ++ R+ IGSGD Sbjct: 245 AVRITHKPTGLVVTCQDERSQIKNRAKAMMVLRARLYDLELQKKQSEEASTRRGMIGSGD 304 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF Q R+TDHRI LTLYKL+Y+L G I ++I+ L A QA + + +E Sbjct: 305 RSERIRTYNFPQNRVTDHRIGLTLYKLDYMLDGDIYEMIDALTMADQAAKLQAQNE 360 >gi|212636630|ref|YP_002313155.1| peptide chain release factor 1 [Shewanella piezotolerans WP3] gi|226739120|sp|B8CQV2|RF1_SHEPW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|212558114|gb|ACJ30568.1| Peptide chain release factor 1 [Shewanella piezotolerans WP3] Length = 361 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 249/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + + L++EY+ + ++ + Q ++ Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDAGIIADQERFRALSKEYSQLEDVVKAFKSFQQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E++++AQ E A ++ I LE+E+ LLLPKD +DD +C +EIR Sbjct: 61 DLESAKEMM--EEDDAELKEMAQEEYKAAKETIETLESELQILLLPKDPNDDNNCFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY +YA +W++EV+++++ + GG+KE++A ISG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSKYAESNRWQIEVMNTNEGEHGGFKEVIAKISGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVIVLPEIPEAEAIEINKADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ +E + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLSARIQAVEDEKRRSEEDSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR+++HRINLTLY+L ++G ID +I PL+ QA M+ + Sbjct: 299 LVSSGDRSERIRTYNFPQGRVSEHRINLTLYRLGEFMEGDIDVVIEPLIQETQADMLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|262041834|ref|ZP_06015019.1| peptide chain release factor 1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259040826|gb|EEW41912.1| peptide chain release factor 1 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q ++ Sbjct: 1 MKSSIVAKLEALYERHEEVQALLGDAATIADQDKFRALSREYAQLSDVARCYTDWRQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ +E+R Sbjct: 61 DIETAQMML----DDPEMREMAQEELRDAKEKGDQLEQQLQILLLPKDPDDERNAFVEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+W+VE+LS+++ + GG+KE++A ISG GV+ R+K Sbjct: 117 AGTGGDEAALFAGDLFRMYTRYAESRRWQVEILSANEGEHGGFKEVIAKISGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E ++ DI D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEMPDINPADLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEHQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|152970781|ref|YP_001335890.1| peptide chain release factor 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895295|ref|YP_002920030.1| peptide chain release factor 1 [Klebsiella pneumoniae NTUH-K2044] gi|330009867|ref|ZP_08306623.1| peptide chain release factor 1 [Klebsiella sp. MS 92-3] gi|166223565|sp|A6TAN9|RF1_KLEP7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|150955630|gb|ABR77660.1| peptide chain release factor 1 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547612|dbj|BAH63963.1| peptide chain release factor 1 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|328534693|gb|EGF61258.1| peptide chain release factor 1 [Klebsiella sp. MS 92-3] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 253/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q ++ Sbjct: 1 MKSSIVAKLEALYERHEEVQALLGDAATIADQDKFRALSREYAQLSDVARCYTDWRQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ +E+R Sbjct: 61 DIETAQMML----DDPEMREMAQEELRDAKEKGDQLEQQLQVLLLPKDPDDERNAFVEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+W+VE+LS+++ + GG+KE++A ISG GV+ R+K Sbjct: 117 AGTGGDEAALFAGDLFRMYTRYAESRRWQVEILSANEGEHGGFKEVIAKISGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E ++ DI D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEMPDINPADLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEHQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|266621433|ref|ZP_06114368.1| peptide chain release factor 1 [Clostridium hathewayi DSM 13479] gi|288866872|gb|EFC99170.1| peptide chain release factor 1 [Clostridium hathewayi DSM 13479] Length = 358 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 255/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ L + + + +L +E A ++P++ + Y + K +D Sbjct: 3 DKLDDILIHYEELMLELGNPSVTEDQNRFRRLMKEQADLAPLVETYTEYKKAKTAVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D +D E+R+LA+ E+ +K+I LE E+ LLLPKD +DDK+ ILEIRAG GG Sbjct: 63 AIL-DEENDEEMRELAKEELSDAKKQIEALEQELKILLLPKDPNDDKNIILEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY Y+ + WKVE++S ++N GG+KE+VA ++G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYVNYSESQHWKVELISVNENGIGGFKEVVAMVTGKGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA ++DV I +D RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEDVDVVIEDKDCRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ N + R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDMELEKRQNSEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++++ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDSIMNGDITELLDSLIAADQAAKLAKVNE 356 >gi|28378950|ref|NP_785842.1| peptide chain release factor 1 [Lactobacillus plantarum WCFS1] gi|254557155|ref|YP_003063572.1| peptide chain release factor 1 [Lactobacillus plantarum JDM1] gi|300766721|ref|ZP_07076638.1| peptide chain release factor RF1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308181160|ref|YP_003925288.1| peptide chain release factor 1 [Lactobacillus plantarum subsp. plantarum ST-III] gi|32171522|sp|Q88UT2|RF1_LACPL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|28271787|emb|CAD64693.1| peptide chain release factor 1 [Lactobacillus plantarum WCFS1] gi|254046082|gb|ACT62875.1| peptide chain release factor 1 [Lactobacillus plantarum JDM1] gi|300495821|gb|EFK30972.1| peptide chain release factor RF1 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308046651|gb|ADN99194.1| peptide chain release factor 1 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E I + K + Y + + ++ Sbjct: 6 DKLQAVADRYEELGELLSDPEVISDSQRFMKLSKEMGNIRETVEKYNHYKEVTSQIEEND 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+ + + ++ + E +LE+EI L+LPKD +DDK+ I+EI GG Sbjct: 66 ELLHEKLDD-EMNAMVKDDLKNLNAEKDQLEHEITLLMLPKDPNDDKNIIMEIHGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W+VEV ++ + GG+KEIV ISG V+S++K+ESG H Sbjct: 125 EASLFAADLFNMYSKYAERQGWQVEVADRNETEVGGFKEIVLIISGDKVYSKLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++D+DI +DIR D R+SG+GGQH+N T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEAQDVDIDIDQKDIRTDVFRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V+ ++SQ QNR +AM++LRAR+YD + R NE A RK +G+GDR Sbjct: 245 VRMTHLPTGIVVSMQDQRSQQQNRAKAMEILRARVYDYYQSREQNEYDAERKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LTL KL+ V+ G +D++I+ L+ A QA+ + Sbjct: 305 SERIRTYNFPQNRVTDHRIGLTLNKLDRVMNGELDEVIDALVLADQAEKMERL 357 >gi|82544335|ref|YP_408282.1| peptide chain release factor 1 [Shigella boydii Sb227] gi|187734065|ref|YP_001879994.1| peptide chain release factor 1 [Shigella boydii CDC 3083-94] gi|119361607|sp|Q31ZQ4|RF1_SHIBS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238691757|sp|B2TZV9|RF1_SHIB3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|81245746|gb|ABB66454.1| peptide chain release factor RF-1 [Shigella boydii Sb227] gi|187431057|gb|ACD10331.1| peptide chain release factor 1 [Shigella boydii CDC 3083-94] gi|320185614|gb|EFW60376.1| Peptide chain release factor 1 [Shigella flexneri CDC 796-83] gi|332094801|gb|EGI99845.1| peptide chain release factor 1 [Shigella boydii 3594-74] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELRKAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|297180269|gb|ADI16488.1| protein chain release factor a [uncultured bacterium HF4000_05M23] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 151/360 (41%), Positives = 239/360 (66%), Gaps = 5/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ ++ +R +E+E MS+ +A +L EY+ + ++ + + + Sbjct: 1 MQQSIEDRLKEIADRHSEVERLMSQPETASDPNAIRRLGREYSQLQHVVELWNDITRAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+ ++A++EV +++ + L EI LLPKD + ++E+R Sbjct: 61 DMEGAREMLT-AEDDAEVLEMAKVEVEELQERLDSLTAEIRLELLPKDETELADAVVEVR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA LF ++FRMY+RYA RKWK+++LS +D GG KE+ I+G + R+ Sbjct: 120 AGAGGDEAGLFAAEVFRMYQRYAEARKWKLKILSQNDTGVGGIKEVTFEIAGERAYQRLH 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 ESGVHRVQRVPATE+ GR+HTS ATV V+P+A E+D++I +D+++D +SG+GGQ V Sbjct: 180 LESGVHRVQRVPATESQGRIHTSTATVVVMPKAEEVDIEISDKDLKVDVYHSSGAGGQSV 239 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N +A+RITH+PTG++V +E+SQ QNR++AM++LR+RL+D+E ++ E SANRK Q Sbjct: 240 NKLATAIRITHLPTGLVVQCQNERSQLQNRMQAMEILRSRLWDMELRKQQEEISANRKAQ 299 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+GDRSE+IRTYNF Q RITDHRI T ++++ VL G +D ++ LL QA+ + +A Sbjct: 300 VGTGDRSEKIRTYNFPQSRITDHRIGYTSHQMQQVLGGELDGFVDALLQEEQARKLAAAG 359 >gi|320174901|gb|EFW50020.1| Peptide chain release factor 1 [Shigella dysenteriae CDC 74-1112] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELRKAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ +KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGCLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|189467991|ref|ZP_03016776.1| hypothetical protein BACINT_04385 [Bacteroides intestinalis DSM 17393] gi|189436255|gb|EDV05240.1| hypothetical protein BACINT_04385 [Bacteroides intestinalis DSM 17393] Length = 370 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 224/362 (61%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMEARKEYIQVLNGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D E+R++A+ E+ A + ELE I LL+P D D K+ ILEIR GTGG Sbjct: 69 EIIT-NEADPEMREMAREELDACQARQPELEEHIKLLLVPADPQDSKNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+E+ S ++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKFCETKGWKMEISSVNEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYVWKNPNTGVSEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYLDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|146329088|ref|YP_001209002.1| peptide chain release factor 1 [Dichelobacter nodosus VCS1703A] gi|146232558|gb|ABQ13536.1| peptide chain release factor 1 [Dichelobacter nodosus VCS1703A] Length = 365 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 167/357 (46%), Positives = 236/357 (66%), Gaps = 9/357 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + R+ E+ +++ + +E+A ++PI+ + +QE DL Sbjct: 9 KEKLITICERYEELNALLADPSVAADPDLLRRYGQEHAQLAPIVEIFQEIEHLQQEANDL 68 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D+E+ + E K+ E E ++ L++P+D D+ + LEIRAGTGG Sbjct: 69 KEL----EDDAEMAEYVAAEQSENLKKTEECEQKLARLMIPQDPLDEANIFLEIRAGTGG 124 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAA+F GDL RMY R+A R W++ VLS + + GGY+EI+ +SG+ V+S +KFESG Sbjct: 125 DEAAIFAGDLMRMYARFAENRGWQISVLSENAGEFGGYREIICRVSGQRVYSTLKFESGA 184 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TEASGR+HTSAATVAVLPE+ E D++I D+R+DT RASG+GGQHVN TD Sbjct: 185 HRVQRVPETEASGRIHTSAATVAVLPESDEIEDIEINPADLRVDTFRASGAGGQHVNKTD 244 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITH+PTGI+V E+SQH+NR +AM+ L A+L D ER+ E +A RK +G+G Sbjct: 245 SAIRITHLPTGIVVECQEERSQHKNRAKAMRWLYAKLMDRERQAAEKEIAAERKSLVGTG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ QGR+TDHRINLTLY L+ VL G +D ++ PL A + + + E Sbjct: 305 DRSERIRTYNYPQGRVTDHRINLTLYALDDVLNGQLDLLVIPLQQAQETNDLLALQE 361 >gi|138896954|ref|YP_001127407.1| peptide chain release factor 1 [Geobacillus thermodenitrificans NG80-2] gi|196249772|ref|ZP_03148468.1| peptide chain release factor 1 [Geobacillus sp. G11MC16] gi|166223561|sp|A4ITK8|RF1_GEOTN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|134268467|gb|ABO68662.1| Peptide chain release factor 1 [Geobacillus thermodenitrificans NG80-2] gi|196210648|gb|EDY05411.1| peptide chain release factor 1 [Geobacillus sp. G11MC16] Length = 358 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 160/355 (45%), Positives = 236/355 (66%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ + + ++ KL ++E A ++ + Y + + + Sbjct: 3 DRLEAVEQRYEKLNELLMDPAVINDPKKLRDYSKEQADLTETVQTYREYKSVRSQLAEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++ + E+ +E+ L ++ LLLPKD +D+K+ I+EIRA GG Sbjct: 63 AML-EEKLEPELREMVKEEIDELEEREEALVEKLKVLLLPKDPNDEKNVIMEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ +S GGYKEI+ ++G+G +S++KFE+G H Sbjct: 122 EAALFAGDLYRMYTRYAESQGWKTEVIEASPTGLGGYKEIIFMVNGKGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE E++V+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEMEEVEVEIHEKDIRVDTYASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHIPTGIVVTCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LT+ KL+ VL G +D+II L+ Q+K + A++ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDLVLDGQLDEIIEALILDDQSKKLEQAND 356 >gi|117621299|ref|YP_857649.1| peptide chain release factor 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166223525|sp|A0KMZ8|RF1_AERHH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|117562706|gb|ABK39654.1| peptide chain release factor 1 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 362 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 167/362 (46%), Positives = 237/362 (65%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ + E D Y LT EYA + I+ + Q ++ Sbjct: 1 MNPSLIRKLEGLIERHEEVQAMLGEPDVAADQDRYRALTREYAQLEDIVHAFQQFRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D+++R++AQ E+ + E E + +LLP+D DD +C LEIR Sbjct: 61 NLDATRQML--EEDDADLREMAQEELPLAKATFEEQEQALQVMLLPRDPKDDNNCYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA + W+V ++S +D + GGYKE++A + G V+ R+K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAERQGWRVSIVSCNDGEHGGYKEVIAKVEGEHVYGRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I +++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINPSELKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL ARL E +R + R+ Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+++HRINLTLY+L +++G +D +I+P++ +QA + S Sbjct: 299 LVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLGEIMEGDLDCVISPMIQEYQADQLASL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|256023112|ref|ZP_05436977.1| peptide chain release factor 1 [Escherichia sp. 4_1_40B] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIREHQADQLAALSE 358 >gi|329897171|ref|ZP_08271911.1| Peptide chain release factor 1 [gamma proteobacterium IMCC3088] gi|328921326|gb|EGG28720.1| Peptide chain release factor 1 [gamma proteobacterium IMCC3088] Length = 361 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ +S++ ++ + +L+ EY+ + +++ Y K Sbjct: 1 MKSSLLHKLELLVERHEEVSALLSDAETISNQERFRELSREYSELEEVVATFKRYQTAKD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D ++R++A+ E+ A ++ I LE E+ LLLPKD D + LEIR Sbjct: 61 DMEAAQLMLLD--DDPDMREMAEEELDAAKEAIEALEIELQRLLLPKDPKDSANVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA KW++EVLS + GGYKEI+ + GR V++ +K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERMKWRLEVLSERAGEHGGYKEIITRVEGRDVYAHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+ A ++I DIR+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVMAEAAEVDAIEINKADIRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTGI+V E+SQH+NR RAM +L+A+L ++ A+E++ R+ Sbjct: 239 VNKTDSAIRITHLPTGIVVECQDERSQHKNRARAMSLLQAKLDTAAEEKAASEQAQERRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGR+TDHRINLTLYKL+ +++G +D ++ PL +QA + + Sbjct: 299 LVGTGDRSDRIRTYNFPQGRMTDHRINLTLYKLDEIMEGDLDSVVTPLRQEYQADQLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SD 360 >gi|324113971|gb|EGC07945.1| peptide chain release [Escherichia fergusonii B253] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEGRRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|15801440|ref|NP_287457.1| peptide chain release factor 1 [Escherichia coli O157:H7 EDL933] gi|12514924|gb|AAG56069.1|AE005338_9 peptide chain release factor RF-1 [Escherichia coli O157:H7 str. EDL933] Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSPCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|88192214|pdb|2B3T|B Chain B, Molecular Basis For Bacterial Class 1 Release Factor Methylation By Prmc Length = 360 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + D+ D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDVNPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|288905236|ref|YP_003430458.1| peptide chain release factor 1 [Streptococcus gallolyticus UCN34] gi|306831307|ref|ZP_07464467.1| peptide chain release factor RF1 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978212|ref|YP_004287928.1| peptide chain release factor 1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288731962|emb|CBI13527.1| peptide chain release factor 1 [Streptococcus gallolyticus UCN34] gi|304426543|gb|EFM29655.1| peptide chain release factor RF1 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178140|emb|CBZ48184.1| Peptide chain release factor 1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 359 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 159/359 (44%), Positives = 234/359 (65%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMALSKEEASTRETVTVYREYKQILQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I D D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 EDAEEMIKDAGGDPELEEMAKEELKDSKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL +MY++YA + WK +V+ +S N GG KE+V +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLQMYQKYAESQGWKFDVMEASYNGVGGIKEVVVMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + NE+ A RK IG Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQNEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + ++ Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVIDALILFDQTKKLEELNQ 359 >gi|153854177|ref|ZP_01995485.1| hypothetical protein DORLON_01476 [Dorea longicatena DSM 13814] gi|149753226|gb|EDM63157.1| hypothetical protein DORLON_01476 [Dorea longicatena DSM 13814] Length = 358 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL+ R EI + E + + KL +E ++PI+ + Y + KQ +D Sbjct: 3 DKLEDLRIRLDEILNELQEPDVANDQNRFRKLMKEQNDLTPIVEAYNEYKECKQAIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+R+LA+ E+ +K + ELE E+ LLLPKD +D+K+ I+EIRAG GG Sbjct: 63 E-MLEEESDEEMRELAKEELNDNKKRVEELEQELKILLLPKDPNDEKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA ++WKVE++ + GG K + I G+G +S+MK+ESGVH Sbjct: 122 EAALFAAEIYRMYMHYAESQRWKVELVECEEIGIGGMKNVTFMIDGKGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA ++D+ I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEDVDIQIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + RK QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKDKAFALLRAKLYDLECQKRHDAEAEARKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYKL+ ++ G I +II+ + A QA + + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIGLTLYKLDKIMNGDIQEIIDACIAADQAAKLANMNE 356 >gi|27468634|ref|NP_765271.1| peptide chain release factor 1 [Staphylococcus epidermidis ATCC 12228] gi|57867593|ref|YP_189289.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A] gi|251812171|ref|ZP_04826644.1| peptide chain release factor 1 [Staphylococcus epidermidis BCM-HMP0060] gi|282876474|ref|ZP_06285340.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135] gi|293366082|ref|ZP_06612770.1| peptide chain release factor RF1 [Staphylococcus epidermidis M23864:W2(grey)] gi|32171533|sp|Q8CNI7|RF1_STAES RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71153098|sp|Q5HMA4|RF1_STAEQ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|27316181|gb|AAO05315.1|AE016749_261 peptide chain release factor RF-1 [Staphylococcus epidermidis ATCC 12228] gi|57638251|gb|AAW55039.1| peptide chain release factor 1 [Staphylococcus epidermidis RP62A] gi|251804268|gb|EES56925.1| peptide chain release factor 1 [Staphylococcus epidermidis BCM-HMP0060] gi|281294726|gb|EFA87254.1| peptide chain release factor 1 [Staphylococcus epidermidis SK135] gi|291319805|gb|EFE60163.1| peptide chain release factor RF1 [Staphylococcus epidermidis M23864:W2(grey)] gi|329726142|gb|EGG62614.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU144] gi|329734173|gb|EGG70491.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU045] gi|329735695|gb|EGG71978.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU028] Length = 358 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 168/353 (47%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E QD+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E ++ + E A++ E+ ++E E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 DMLNET-SDKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKE+ ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G +D+I+ L + Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLNQIMEGNLDEIVEALTLSEQTEKLKELN 354 >gi|313113834|ref|ZP_07799401.1| peptide chain release factor 1 [Faecalibacterium cf. prausnitzii KLE1255] gi|310623861|gb|EFQ07249.1| peptide chain release factor 1 [Faecalibacterium cf. prausnitzii KLE1255] Length = 363 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 146/355 (41%), Positives = 236/355 (66%), Gaps = 5/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ + +RF E+ +R+++ + + +L EY P++ + + Sbjct: 7 QMDAVCHRFEELSIRLNQPDTAADPALFRRLMREYHDAEPVVQAYRAWQTAQDHLAQAKA 66 Query: 65 VIGDHNS-DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + D + + + Q E+ +++ +LEN + LLLPKD +D K+ I+EIR G GG Sbjct: 67 LLEEPGALDPDFKQMIQQEISEKSQDVEKLENNLKILLLPKDVNDGKNVIVEIRGGAGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L RMY Y R W++E+L+ ++ + GG KE + ++ G G ++R+K+ESGVH Sbjct: 127 EAALFAHSLLRMYTMYVQSRGWQLEMLNLNETELGGVKEAIFSVDGAGAYNRLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS ATVAV+P+A E+D + ++D+RIDT R+SG+GGQH+N T SA Sbjct: 187 RVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+TH+PTG++V +E+SQ QN+ +A+++LR+RL ++K+ + +A+R+ Q+G+GDR Sbjct: 247 IRVTHLPTGMVVECQNERSQFQNKDKALEILRSRLLAQKQKQQQDAINASRQGQVGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q R TDHRI LT++ L ++ G +D++I+ L T QA+ + +E Sbjct: 307 SEKIRTYNFPQDRCTDHRIGLTVHNLSKIMDGNLDEVIDALATREQAEKLQKLNE 361 >gi|42527989|ref|NP_973087.1| peptide chain release factor 1 [Treponema denticola ATCC 35405] gi|81570139|sp|Q73JU6|RF1_TREDE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|41819034|gb|AAS13006.1| peptide chain release factor 1 [Treponema denticola ATCC 35405] Length = 361 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 252/355 (70%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +L+ R E+E + + Y + E++ +S ++ + Y +++ +D Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I + SD+E++++A+ E+ ++E + E ++ LL+P D ++K+ I+EIR GTG Sbjct: 61 SKLLIQEE-SDAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA ++ WK EVLS ++ + GGYKEI +ISG+ V+ +++ESG Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE SGR+HTSA TVAVLPEA E +++I ED+RID MRA G GGQ VNTTD Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V EKSQ +N+ +AM+VLR+RLYD+E + ER+ NRK Q+GSG Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRINLTLYKL+ V+QG +D++I+ L A + +M+ +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDAVMQGSLDELIDALCIAAREEMMKAA 354 >gi|320546676|ref|ZP_08040988.1| peptide chain release factor RF1 [Streptococcus equinus ATCC 9812] gi|320448731|gb|EFW89462.1| peptide chain release factor RF1 [Streptococcus equinus ATCC 9812] Length = 359 Score = 277 bits (708), Expect = 2e-72, Method: Composition-based stats. Identities = 159/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y + Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMALSKEEASTRETVAVYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I D D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 EDAEEMIKDAGGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL +MY++YA + WK +V+ +S N GG KE+V +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLQMYQKYAESQGWKFDVMEASYNGVGGIKEVVVMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMKV+RAR+ D + NE+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKVIRARVADHFAQIAQNEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+II+ L+ Q K + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEIIDALVLFDQTKKLEELN 358 >gi|167752375|ref|ZP_02424502.1| hypothetical protein ALIPUT_00619 [Alistipes putredinis DSM 17216] gi|167660616|gb|EDS04746.1| hypothetical protein ALIPUT_00619 [Alistipes putredinis DSM 17216] Length = 361 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 228/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ LK ++ EI ++++ + +I+ +EY + PII Y + Sbjct: 9 RLDGLKLKYEEIGQKLTDPEVIADVKQFIQFNKEYRELEPIIEASERYRTAIANLAEAKD 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ D E+R++A+ E+ +E +I LE EI LL+PKD D K+ I+EIR GTGG E Sbjct: 69 ILA-NDKDEEMREMARGEIAELEPKIETLEEEIKLLLIPKDPQDAKNAIVEIRGGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDL RMY +Y + WK E+ S S+ GGYKE+V ++G V+ +K+ESGVHR Sbjct: 128 AAIFAGDLMRMYTKYIESKGWKYEITSFSEGTAGGYKEVVMKVTGNNVYGTLKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTSAA+VAVLPEA E DV+I + DIR D ASG GGQ VNTT SA+ Sbjct: 188 VQRVPQTETQGRVHTSAASVAVLPEAEEFDVEISMNDIRKDIFCASGPGGQSVNTTYSAI 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +KSQ +N +A + LR R++++E + +E ++ RK + +GDRS Sbjct: 248 RLTHIPTGIVVQCQDQKSQLKNFDKAFEELRTRVFNLEYSKYLDEIASKRKTMVSTGDRS 307 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + + Sbjct: 308 AKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQDCIDHLIVAENAERLKESE 360 >gi|288925782|ref|ZP_06419713.1| peptide chain release factor 1 [Prevotella buccae D17] gi|315608268|ref|ZP_07883258.1| peptide chain release factor RF1 [Prevotella buccae ATCC 33574] gi|288337437|gb|EFC75792.1| peptide chain release factor 1 [Prevotella buccae D17] gi|315250049|gb|EFU30048.1| peptide chain release factor RF1 [Prevotella buccae ATCC 33574] Length = 370 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 218/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + KLT+EY + I+ Y ++ Sbjct: 9 EKLDGLESRFEEVSTLITDPDVIADQQRYVKLTKEYKDLGDIMDVRKRYIACLNAIKESK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD++++++A+ E+ E +LE EI L+PKD +D K+ +EIRAG GG Sbjct: 69 DILA-NESDADMKEMAREELATNEDLQPKLEEEIKIALVPKDPEDAKNVQMEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++Y + W + V S S+ GGYKEI +SG V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKKYCDSKGWNLSVTSVSEGAVGGYKEIDFAVSGVDVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L ++D E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTFIHDREHQKYIDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ + G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFMGGDIQDMIDALTVAENAEKLKE 367 >gi|225027777|ref|ZP_03716969.1| hypothetical protein EUBHAL_02036 [Eubacterium hallii DSM 3353] gi|224954923|gb|EEG36132.1| hypothetical protein EUBHAL_02036 [Eubacterium hallii DSM 3353] Length = 359 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 244/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R E+ +SE V + L +E ++PI+ K Y + KQ +D Sbjct: 3 DKLEDLVKRLDEVMQELSEPDVVSDQNRFRNLMKEQNELAPIVEKYKEYKEAKQTIED-S 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E+R+L + E+ +K + + E E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 62 VEMLEEEHDEEMRELLKEELSEAKKNVEQYEEELKVLLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY+ YA ++WK E + ++N GG+KE+ I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAAEIYRMYKNYAESKRWKTEFIDVNENGIGGFKEVSFMINGQGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVA++PEA E+DV + + D R D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSTITVAIMPEAEEVDVQLDMNDCRFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +A+KVLRARLYD+E+ + + + RK QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLKNKDKAIKVLRARLYDLEQSKAHDAEAELRKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +E+IRTYNF QGR+TDHRI LTL++L+ +L G +D+II+ L A QA + E Sbjct: 302 AEKIRTYNFPQGRVTDHRIKLTLHRLDDILNGDLDEIIDSLTAADQAAKLSKLQE 356 >gi|315651889|ref|ZP_07904892.1| peptide chain release factor RF1 [Eubacterium saburreum DSM 3986] gi|315485891|gb|EFU76270.1| peptide chain release factor RF1 [Eubacterium saburreum DSM 3986] Length = 356 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 252/355 (70%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + D+ + EI ++ + + KL +E + ++P++ Y + KQ ++D Sbjct: 3 DNLEDIVVHYDEIMAELAGGDVANDQNRFRKLMKEQSDLAPLVETYGEYKKAKQLQEDAL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ +D E++++A+ E+ ++ EL +++ LLLPKD +DDK+ +LEIRAG GG Sbjct: 63 EMLEM--NDEEMKEMAKEELAEGKRLEEELSDKLKILLLPKDPNDDKNIMLEIRAGAGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L+RMY YA + WKVE++ ++N GGYKE+VA +SG+G +S++K+ESGVH Sbjct: 121 EAALFAMQLYRMYVHYAETQNWKVEMIDVNENGIGGYKEVVAMVSGKGAYSKLKYESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS A+VAV+PEA E+DV I + D+RID MRASG+GGQ VNTTDSA Sbjct: 181 RVQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LR++LY++E ++ + +A+R+ QIG+GDR Sbjct: 241 VRLTHYPTGIVIYSQTEKSQLQNKEKAFTLLRSKLYEIELEKKQSAEAADRRSQIGTGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRINLTLYKL+ ++ G I ++I+ + A QA + +E Sbjct: 301 SEKIRTYNFPQGRVTDHRINLTLYKLDKIMNGDIQELIDGCIAADQAAKLAKLNE 355 >gi|294085498|ref|YP_003552258.1| protein chain release factor A [Candidatus Puniceispirillum marinum IMCC1322] gi|292665073|gb|ADE40174.1| Protein chain release factor A [Candidatus Puniceispirillum marinum IMCC1322] Length = 358 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 183/356 (51%), Positives = 252/356 (70%), Gaps = 4/356 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + R E+E ++++ S VD E + + P+ +I + + E Sbjct: 1 MSLDSTMDKVLARRTEVENILNDAASLSVDEMANFARELSELRPVCEQIELVQRLTSELS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++G+ D ++ ++A++E+ ++ +I + + ++ LLLPKD DD ++ ILE+RAGT Sbjct: 61 DAEVMVGEAGDDPDMLEMARLEMQELQAQIPDEQQKLQLLLLPKDRDDARNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF MY+R++A WK EV+ S+ GGYKE ATI+G VF+R+KFES Sbjct: 121 GGDEAALFASDLFGMYQRFSAKYGWKFEVMEVSETGIGGYKEATATITGSDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPEA ++DV++ D+RID RASG GGQ VNTT Sbjct: 181 GVHRVQRVPETETGGRIHTSAATVAVLPEAEDVDVEVVESDLRIDVFRASGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ + KSQH+NR +AMK+LRARLYD ER R+ ER+A+RK Q+GS Sbjct: 241 DSAVRITHMPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARVQAERAADRKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D++I+ L++ QA+ + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLDRVIAGEALDEVIDALISEDQARRLAE 356 >gi|170768314|ref|ZP_02902767.1| peptide chain release factor 1 [Escherichia albertii TW07627] gi|170123080|gb|EDS92011.1| peptide chain release factor 1 [Escherichia albertii TW07627] Length = 360 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQDRFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERDAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAETRRWQVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIVQEHQADQLAALSE 358 >gi|283785500|ref|YP_003365365.1| peptide chain release factor 1 [Citrobacter rodentium ICC168] gi|282948954|emb|CBG88557.1| peptide chain release factor 1 [Citrobacter rodentium ICC168] Length = 360 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAETIADQERFRALSREYAQLSDVSRCFTDWRQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELRDAKEKSEQLEQQLQLLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S ++ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAETRRWRVEIMSMNEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTYRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPVVQEYQADQLAALSE 358 >gi|323187441|gb|EFZ72750.1| peptide chain release factor 1 [Escherichia coli RN587/1] Length = 360 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLP+D DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPRDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|147567|gb|AAA24519.1| peptide chain release factor 1 [Escherichia coli] Length = 360 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 171/355 (48%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTT SA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTGSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|145298193|ref|YP_001141034.1| peptide chain release factor 1 [Aeromonas salmonicida subsp. salmonicida A449] gi|166223526|sp|A4SK64|RF1_AERS4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|142850965|gb|ABO89286.1| Protein chain release factor A [Aeromonas salmonicida subsp. salmonicida A449] Length = 362 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 239/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ + E D Y LT EYA + I+ + Q ++ Sbjct: 1 MNPSLIRKLEGLIERHEEVQAMLGEPGVASDQDRYRALTREYAQLEDIVHAFQRFRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+++R++AQ E+ + + E E + +LLP+D DD +C LEIR Sbjct: 61 NLEATKLML--EEDDADLREMAQEELPLAKSTLEEQEQALQVMLLPRDPKDDNNCYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA + W++ ++S +D + GGYKE++A + G V+ R+K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAERQGWRISIVSCNDGEHGGYKEVIAKVDGEHVYGRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAVLPE E ++I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVAVLPEVPEAEQIEINANDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+PTG++V E+SQH+NR +AM VL ARL E +R + R+ Sbjct: 239 VNKTDSAIRITHLPTGLVVECQDERSQHKNRAKAMSVLSARLQAAEDERHRAAEQSTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+++HRINLTLY+L +++G +D II+P++ +QA + S Sbjct: 299 LVGSGDRSERIRTYNYPQGRLSEHRINLTLYRLGEIMEGDLDCIISPMIQEYQADQLASL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|305664895|ref|YP_003861182.1| peptide chain release factor 1 [Maribacter sp. HTCC2170] gi|88707725|gb|EAQ99965.1| peptide chain release factor 1 [Maribacter sp. HTCC2170] Length = 358 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 165/357 (46%), Positives = 233/357 (65%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + Y++LT+EY + ++ K Y + Q+ Sbjct: 1 MIDKLNIVKQRFDEVSDLIIQPDVISDQKRYVQLTKEYKDLKDLMEKRDAYVELTNNIQE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A++++ + + +LE +I +L+PKD +D K ++EIRAGTG Sbjct: 61 AEEIISD-GSDAEMLEMAKMQLDEAKTALPKLEEDIKLMLIPKDPEDAKDVVVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y R WK V+ S+ GGYKEI +SG V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCEGRGWKTNVIDLSEGTSGGYKEIQFEVSGADVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA + DV I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEDFDVQIDPKDVRIDFFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++ +KSQH+N+ +A +VLR+RLYD+E R E +A R Q+ SG Sbjct: 240 SAVRLTHIPTGLVAQCQDQKSQHKNKDKAFRVLRSRLYDLELARKQEEDAAKRNSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++QGR+TDHRI LTLY L+ ++ G I II+ L + + ASE Sbjct: 300 DRSAKIRTYNYAQGRVTDHRIGLTLYDLQNIINGDIQKIIDELSLVENTEKLKEASE 356 >gi|88704041|ref|ZP_01101756.1| Peptide chain release factor 1 [Congregibacter litoralis KT71] gi|88701868|gb|EAQ98972.1| Peptide chain release factor 1 [Congregibacter litoralis KT71] Length = 361 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 163/361 (45%), Positives = 237/361 (65%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + + + + +L+ E++ + ++ Y + + Sbjct: 1 MKPSLLLKLETLSERHEEVSALLGDPGVISDQDQFRRLSREFSELETVVKCFGEYQELQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +++ D D+++R++A+ E+ E LE E+ LLLP+D D + LEIR Sbjct: 61 DLEAAESMLAD--DDADMREMAKTEISEGEARREALEAELQLLLLPRDPKDSHNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL RMY R+A + W++EVLS + GGYKEI++ I G V++ +K Sbjct: 119 AGTGGDEAAIFSGDLQRMYSRFAERQGWRIEVLSERPGEHGGYKEIISRIEGSDVYAYLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA+L E E V+I D+R+DT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAILAEPEELEAVEINKADLRVDTYRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTGI+V E+SQH+NR RAM +L+A+L V + A+E++ R+ Sbjct: 239 VNKTDSAVRLTHLPTGIVVECQDERSQHKNRARAMSLLQAKLDSVAEESQASEQAEQRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGR+TDHRINLTLYKL+ V+ G ++ ++ PL HQA + + Sbjct: 299 LVGTGDRSDRIRTYNFPQGRVTDHRINLTLYKLDEVMAGDMEAVLGPLRQEHQADQLAAM 358 Query: 356 S 356 S Sbjct: 359 S 359 >gi|257439051|ref|ZP_05614806.1| peptide chain release factor 1 [Faecalibacterium prausnitzii A2-165] gi|257198541|gb|EEU96825.1| peptide chain release factor 1 [Faecalibacterium prausnitzii A2-165] Length = 356 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 152/352 (43%), Positives = 233/352 (66%), Gaps = 4/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + +RF E+ +R+++ + + +L +EY P++ + + Sbjct: 1 MEAVSHRFEELSIRLNQPETAADPALFRRLMQEYHEAEPVVQAYQALTTAQDHLAQAKAL 60 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + +++ Q E+ +E+ +LEN + LLLPKD +DDKS I+E+R G GG EA Sbjct: 61 LEGETLDPDFKEMVQQEIGEKSQEVAQLENNLKILLLPKDVNDDKSVIMELRGGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF L RMY Y R W++EVL+ ++ + GG KE + ++G G ++R+K+ESGVHRV Sbjct: 121 ALFAHSLMRMYTMYVQSRGWELEVLNLNETELGGVKEAILAVNGAGAYNRLKYESGVHRV 180 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GR+HTS ATVAV+P+A E+D+ I +D+RIDT R+SG+GGQH+N T SA+R Sbjct: 181 QRVPETETQGRIHTSTATVAVMPQAEEVDLVIDPKDLRIDTFRSSGAGGQHINKTSSAIR 240 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTG++V +E+SQ QN+ +A++VLR+RL ++K + +ANR Q+G+GDRSE Sbjct: 241 VTHIPTGMVVECQNERSQFQNKDKALEVLRSRLLAQKQKEQQDAINANRAGQVGTGDRSE 300 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYNF Q R TDHRI LT++ L+ ++ G +D+II+ L T QA+ + + Sbjct: 301 KIRTYNFPQDRCTDHRIGLTVHNLDKIMDGNLDEIIDALATHEQAEKLRQLN 352 >gi|317475302|ref|ZP_07934568.1| peptide chain release factor 1 [Bacteroides eggerthii 1_2_48FAA] gi|316908556|gb|EFV30244.1| peptide chain release factor 1 [Bacteroides eggerthii 1_2_48FAA] Length = 370 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQVLSGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D+E+R++A+ E+ A + ELE +I LL+P D D ++ ILEIR G GG Sbjct: 69 EIIA-NETDAEMREMAREELDACQTRQPELEEQIKLLLVPADPQDSRNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+++ S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCETKGWKLDISSANEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|15830970|ref|NP_309743.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. Sakai] gi|16129174|ref|NP_415729.1| peptide chain release factor RF-1 [Escherichia coli str. K-12 substr. MG1655] gi|24112610|ref|NP_707120.1| peptide chain release factor 1 [Shigella flexneri 2a str. 301] gi|26247534|ref|NP_753574.1| peptide chain release factor 1 [Escherichia coli CFT073] gi|30062735|ref|NP_836906.1| peptide chain release factor 1 [Shigella flexneri 2a str. 2457T] gi|74312449|ref|YP_310868.1| peptide chain release factor 1 [Shigella sonnei Ss046] gi|82776551|ref|YP_402900.1| peptide chain release factor 1 [Shigella dysenteriae Sd197] gi|89108056|ref|AP_001836.1| peptide chain release factor RF-1 [Escherichia coli str. K-12 substr. W3110] gi|91210432|ref|YP_540418.1| peptide chain release factor 1 [Escherichia coli UTI89] gi|110641441|ref|YP_669171.1| peptide chain release factor 1 [Escherichia coli 536] gi|110805216|ref|YP_688736.1| peptide chain release factor 1 [Shigella flexneri 5 str. 8401] gi|117623429|ref|YP_852342.1| peptide chain release factor 1 [Escherichia coli APEC O1] gi|157158410|ref|YP_001462464.1| peptide chain release factor 1 [Escherichia coli E24377A] gi|157160716|ref|YP_001458034.1| peptide chain release factor 1 [Escherichia coli HS] gi|168750771|ref|ZP_02775793.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4113] gi|168758136|ref|ZP_02783143.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4401] gi|168764382|ref|ZP_02789389.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4501] gi|168771100|ref|ZP_02796107.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4486] gi|168776896|ref|ZP_02801903.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4196] gi|168782567|ref|ZP_02807574.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4076] gi|168787715|ref|ZP_02812722.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC869] gi|168801524|ref|ZP_02826531.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC508] gi|170020422|ref|YP_001725376.1| peptide chain release factor 1 [Escherichia coli ATCC 8739] gi|170080839|ref|YP_001730159.1| peptide chain release factor RF-1 [Escherichia coli str. K-12 substr. DH10B] gi|170682630|ref|YP_001743983.1| peptide chain release factor 1 [Escherichia coli SMS-3-5] gi|188494282|ref|ZP_03001552.1| peptide chain release factor 1 [Escherichia coli 53638] gi|191170894|ref|ZP_03032445.1| peptide chain release factor 1 [Escherichia coli F11] gi|193064852|ref|ZP_03045929.1| peptide chain release factor 1 [Escherichia coli E22] gi|193069953|ref|ZP_03050901.1| peptide chain release factor 1 [Escherichia coli E110019] gi|194426002|ref|ZP_03058558.1| peptide chain release factor 1 [Escherichia coli B171] gi|194434263|ref|ZP_03066529.1| peptide chain release factor 1 [Shigella dysenteriae 1012] gi|194437123|ref|ZP_03069222.1| peptide chain release factor 1 [Escherichia coli 101-1] gi|195939099|ref|ZP_03084481.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4024] gi|208807446|ref|ZP_03249783.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4206] gi|208816069|ref|ZP_03257248.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4045] gi|208822717|ref|ZP_03263036.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4042] gi|209398404|ref|YP_002270145.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4115] gi|209918452|ref|YP_002292536.1| peptide chain release factor 1 [Escherichia coli SE11] gi|217328218|ref|ZP_03444300.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. TW14588] gi|218549098|ref|YP_002382889.1| peptide chain release factor 1 [Escherichia fergusonii ATCC 35469] gi|218553765|ref|YP_002386678.1| peptide chain release factor 1 [Escherichia coli IAI1] gi|218558140|ref|YP_002391053.1| peptide chain release factor 1 [Escherichia coli S88] gi|218694725|ref|YP_002402392.1| peptide chain release factor 1 [Escherichia coli 55989] gi|218699918|ref|YP_002407547.1| peptide chain release factor 1 [Escherichia coli IAI39] gi|218704733|ref|YP_002412252.1| peptide chain release factor 1 [Escherichia coli UMN026] gi|227886367|ref|ZP_04004172.1| peptide chain release factor 1 [Escherichia coli 83972] gi|237705173|ref|ZP_04535654.1| peptide chain release factor RF-1 [Escherichia sp. 3_2_53FAA] gi|238900442|ref|YP_002926238.1| peptide chain release factor RF-1 [Escherichia coli BW2952] gi|253773790|ref|YP_003036621.1| peptide chain release factor 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161293|ref|YP_003044401.1| peptide chain release factor 1 [Escherichia coli B str. REL606] gi|254792681|ref|YP_003077518.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. TW14359] gi|256018539|ref|ZP_05432404.1| peptide chain release factor 1 [Shigella sp. D9] gi|260843503|ref|YP_003221281.1| peptide chain release factor RF-1 [Escherichia coli O103:H2 str. 12009] gi|260854872|ref|YP_003228763.1| peptide chain release factor RF-1 [Escherichia coli O26:H11 str. 11368] gi|260867616|ref|YP_003234018.1| peptide chain release factor RF-1 [Escherichia coli O111:H- str. 11128] gi|261224943|ref|ZP_05939224.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. FRIK2000] gi|261257200|ref|ZP_05949733.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. FRIK966] gi|291282236|ref|YP_003499054.1| Peptide chain release factor 1 [Escherichia coli O55:H7 str. CB9615] gi|293404754|ref|ZP_06648746.1| peptide chain release factor 1 [Escherichia coli FVEC1412] gi|293409598|ref|ZP_06653174.1| peptide chain release factor 1 [Escherichia coli B354] gi|293414488|ref|ZP_06657137.1| peptide chain release factor 1 [Escherichia coli B185] gi|293433527|ref|ZP_06661955.1| peptide chain release factor 1 [Escherichia coli B088] gi|298380397|ref|ZP_06989996.1| peptide chain release factor 1 [Escherichia coli FVEC1302] gi|300816902|ref|ZP_07097122.1| peptide chain release factor 1 [Escherichia coli MS 107-1] gi|300821019|ref|ZP_07101168.1| peptide chain release factor 1 [Escherichia coli MS 119-7] gi|300896599|ref|ZP_07115118.1| peptide chain release factor 1 [Escherichia coli MS 198-1] gi|300906882|ref|ZP_07124556.1| peptide chain release factor 1 [Escherichia coli MS 84-1] gi|300921823|ref|ZP_07137980.1| peptide chain release factor 1 [Escherichia coli MS 182-1] gi|300928243|ref|ZP_07143780.1| peptide chain release factor 1 [Escherichia coli MS 187-1] gi|300939553|ref|ZP_07154210.1| peptide chain release factor 1 [Escherichia coli MS 21-1] gi|300951678|ref|ZP_07165502.1| peptide chain release factor 1 [Escherichia coli MS 116-1] gi|300955611|ref|ZP_07167968.1| peptide chain release factor 1 [Escherichia coli MS 175-1] gi|300971920|ref|ZP_07171708.1| peptide chain release factor 1 [Escherichia coli MS 45-1] gi|300995966|ref|ZP_07181328.1| peptide chain release factor 1 [Escherichia coli MS 200-1] gi|301017243|ref|ZP_07182024.1| peptide chain release factor 1 [Escherichia coli MS 69-1] gi|301046860|ref|ZP_07193977.1| peptide chain release factor 1 [Escherichia coli MS 185-1] gi|301305581|ref|ZP_07211672.1| peptide chain release factor 1 [Escherichia coli MS 124-1] gi|301327073|ref|ZP_07220355.1| peptide chain release factor 1 [Escherichia coli MS 78-1] gi|301648136|ref|ZP_07247889.1| peptide chain release factor 1 [Escherichia coli MS 146-1] gi|306813891|ref|ZP_07448064.1| peptide chain release factor 1 [Escherichia coli NC101] gi|307137826|ref|ZP_07497182.1| peptide chain release factor 1 [Escherichia coli H736] gi|307310034|ref|ZP_07589684.1| peptide chain release factor 1 [Escherichia coli W] gi|309789161|ref|ZP_07683754.1| peptide chain release factor 1 [Shigella dysenteriae 1617] gi|309794302|ref|ZP_07688726.1| peptide chain release factor 1 [Escherichia coli MS 145-7] gi|312971398|ref|ZP_07785573.1| peptide chain release factor 1 [Escherichia coli 1827-70] gi|331641741|ref|ZP_08342876.1| peptide chain release factor 1 [Escherichia coli H736] gi|331646529|ref|ZP_08347632.1| peptide chain release factor 1 [Escherichia coli M605] gi|331662614|ref|ZP_08363537.1| peptide chain release factor 1 [Escherichia coli TA143] gi|331667595|ref|ZP_08368459.1| peptide chain release factor 1 [Escherichia coli TA271] gi|331676991|ref|ZP_08377687.1| peptide chain release factor 1 [Escherichia coli H591] gi|331682700|ref|ZP_08383319.1| peptide chain release factor 1 [Escherichia coli H299] gi|332279599|ref|ZP_08392012.1| peptide chain release factor RF-1 [Shigella sp. D9] gi|67471891|sp|P0A7I0|RF1_ECOLI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|67471892|sp|P0A7I1|RF1_ECOL6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|67471893|sp|P0A7I2|RF1_ECO57 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|67471894|sp|P0A7I3|RF1_SHIFL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361536|sp|Q0TIF9|RF1_ECOL5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361537|sp|Q1RCM7|RF1_ECOUT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361608|sp|Q32GZ6|RF1_SHIDS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361609|sp|Q3Z0S9|RF1_SHISS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|122957490|sp|Q0T5I4|RF1_SHIF8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223555|sp|A1AAD8|RF1_ECOK1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166977361|sp|A7ZKY5|RF1_ECO24 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166977362|sp|A7ZZE7|RF1_ECOHS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039971|sp|B1IU82|RF1_ECOLC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739104|sp|B7MKB3|RF1_ECO45 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739105|sp|B7NUX7|RF1_ECO7I RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739106|sp|B7LXC6|RF1_ECO8A RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739107|sp|B7N422|RF1_ECOLU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739108|sp|B1LH89|RF1_ECOSM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739109|sp|B7LSH9|RF1_ESCF3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229576656|sp|B1XAQ2|RF1_ECODH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238058712|sp|B5YXM9|RF1_ECO5E RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238058713|sp|B6I9S6|RF1_ECOSE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790881|sp|B7LGX2|RF1_ECO55 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|259585238|sp|C4ZTQ2|RF1_ECOBW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|26107935|gb|AAN80134.1|AE016759_408 Peptide chain release factor 1 [Escherichia coli CFT073] gi|1651601|dbj|BAA36069.1| peptide chain release factor RF-1 [Escherichia coli str. K12 substr. W3110] gi|1787462|gb|AAC74295.1| peptide chain release factor RF-1 [Escherichia coli str. K-12 substr. MG1655] gi|13361181|dbj|BAB35139.1| peptide chain release factor RF-1 [Escherichia coli O157:H7 str. Sakai] gi|24051515|gb|AAN42827.1| peptide chain release factor RF-1 [Shigella flexneri 2a str. 301] gi|30040983|gb|AAP16713.1| peptide chain release factor RF-1 [Shigella flexneri 2a str. 2457T] gi|73855926|gb|AAZ88633.1| peptide chain release factor RF-1 [Shigella sonnei Ss046] gi|81240699|gb|ABB61409.1| peptide chain release factor RF-1 [Shigella dysenteriae Sd197] gi|91072006|gb|ABE06887.1| peptide chain release factor RF-1 [Escherichia coli UTI89] gi|110343033|gb|ABG69270.1| peptide chain release factor 1 [Escherichia coli 536] gi|110614764|gb|ABF03431.1| peptide chain release factor RF-1 [Shigella flexneri 5 str. 8401] gi|115512553|gb|ABJ00628.1| peptide chain release factor 1 [Escherichia coli APEC O1] gi|157066396|gb|ABV05651.1| peptide chain release factor 1 [Escherichia coli HS] gi|157080440|gb|ABV20148.1| peptide chain release factor 1 [Escherichia coli E24377A] gi|169755350|gb|ACA78049.1| peptide chain release factor 1 [Escherichia coli ATCC 8739] gi|169888674|gb|ACB02381.1| peptide chain release factor RF-1 [Escherichia coli str. K-12 substr. DH10B] gi|170520348|gb|ACB18526.1| peptide chain release factor 1 [Escherichia coli SMS-3-5] gi|187767792|gb|EDU31636.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4196] gi|188015105|gb|EDU53227.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4113] gi|188489481|gb|EDU64584.1| peptide chain release factor 1 [Escherichia coli 53638] gi|188999995|gb|EDU68981.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4076] gi|189354981|gb|EDU73400.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4401] gi|189360046|gb|EDU78465.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4486] gi|189365613|gb|EDU84029.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4501] gi|189372547|gb|EDU90963.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC869] gi|189376326|gb|EDU94742.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC508] gi|190908626|gb|EDV68214.1| peptide chain release factor 1 [Escherichia coli F11] gi|192927537|gb|EDV82154.1| peptide chain release factor 1 [Escherichia coli E22] gi|192956706|gb|EDV87161.1| peptide chain release factor 1 [Escherichia coli E110019] gi|194416057|gb|EDX32323.1| peptide chain release factor 1 [Escherichia coli B171] gi|194417494|gb|EDX33597.1| peptide chain release factor 1 [Shigella dysenteriae 1012] gi|194424106|gb|EDX40094.1| peptide chain release factor 1 [Escherichia coli 101-1] gi|208727247|gb|EDZ76848.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4206] gi|208732717|gb|EDZ81405.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4045] gi|208738202|gb|EDZ85885.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4042] gi|209159804|gb|ACI37237.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. EC4115] gi|209772528|gb|ACI84576.1| peptide chain release factor RF-1 [Escherichia coli] gi|209772530|gb|ACI84577.1| peptide chain release factor RF-1 [Escherichia coli] gi|209772532|gb|ACI84578.1| peptide chain release factor RF-1 [Escherichia coli] gi|209772534|gb|ACI84579.1| peptide chain release factor RF-1 [Escherichia coli] gi|209772536|gb|ACI84580.1| peptide chain release factor RF-1 [Escherichia coli] gi|209911711|dbj|BAG76785.1| peptide chain release factor 1 [Escherichia coli SE11] gi|217318645|gb|EEC27071.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. TW14588] gi|218351457|emb|CAU97165.1| peptide chain release factor RF-1 [Escherichia coli 55989] gi|218356639|emb|CAQ89265.1| peptide chain release factor RF-1 [Escherichia fergusonii ATCC 35469] gi|218360533|emb|CAQ98091.1| peptide chain release factor RF-1 [Escherichia coli IAI1] gi|218364909|emb|CAR02605.1| peptide chain release factor RF-1 [Escherichia coli S88] gi|218369904|emb|CAR17679.1| peptide chain release factor RF-1 [Escherichia coli IAI39] gi|218431830|emb|CAR12715.1| peptide chain release factor RF-1 [Escherichia coli UMN026] gi|222033010|emb|CAP75750.1| Peptide chain release factor 1 [Escherichia coli LF82] gi|226899930|gb|EEH86189.1| peptide chain release factor RF-1 [Escherichia sp. 3_2_53FAA] gi|227836571|gb|EEJ47037.1| peptide chain release factor 1 [Escherichia coli 83972] gi|238861984|gb|ACR63982.1| peptide chain release factor RF-1 [Escherichia coli BW2952] gi|242376990|emb|CAQ31713.1| peptide chain release factor RF1 [Escherichia coli BL21(DE3)] gi|253324834|gb|ACT29436.1| peptide chain release factor 1 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973194|gb|ACT38865.1| peptide chain release factor 1 [Escherichia coli B str. REL606] gi|253977408|gb|ACT43078.1| peptide chain release factor 1 [Escherichia coli BL21(DE3)] gi|254592081|gb|ACT71442.1| peptide chain release factor RF-1 [Escherichia coli O157:H7 str. TW14359] gi|257753521|dbj|BAI25023.1| peptide chain release factor RF-1 [Escherichia coli O26:H11 str. 11368] gi|257758650|dbj|BAI30147.1| peptide chain release factor RF-1 [Escherichia coli O103:H2 str. 12009] gi|257763972|dbj|BAI35467.1| peptide chain release factor RF-1 [Escherichia coli O111:H- str. 11128] gi|260449654|gb|ACX40076.1| peptide chain release factor 1 [Escherichia coli DH1] gi|281178397|dbj|BAI54727.1| peptide chain release factor 1 [Escherichia coli SE15] gi|281600635|gb|ADA73619.1| Peptide chain release factor 1 [Shigella flexneri 2002017] gi|284921023|emb|CBG34088.1| peptide chain release factor 1 [Escherichia coli 042] gi|290762109|gb|ADD56070.1| Peptide chain release factor 1 [Escherichia coli O55:H7 str. CB9615] gi|291324346|gb|EFE63768.1| peptide chain release factor 1 [Escherichia coli B088] gi|291426962|gb|EFE99988.1| peptide chain release factor 1 [Escherichia coli FVEC1412] gi|291434546|gb|EFF07519.1| peptide chain release factor 1 [Escherichia coli B185] gi|291470066|gb|EFF12550.1| peptide chain release factor 1 [Escherichia coli B354] gi|294493866|gb|ADE92622.1| peptide chain release factor 1 [Escherichia coli IHE3034] gi|298277839|gb|EFI19353.1| peptide chain release factor 1 [Escherichia coli FVEC1302] gi|300301228|gb|EFJ57613.1| peptide chain release factor 1 [Escherichia coli MS 185-1] gi|300304663|gb|EFJ59183.1| peptide chain release factor 1 [Escherichia coli MS 200-1] gi|300317504|gb|EFJ67288.1| peptide chain release factor 1 [Escherichia coli MS 175-1] gi|300359542|gb|EFJ75412.1| peptide chain release factor 1 [Escherichia coli MS 198-1] gi|300400374|gb|EFJ83912.1| peptide chain release factor 1 [Escherichia coli MS 69-1] gi|300401315|gb|EFJ84853.1| peptide chain release factor 1 [Escherichia coli MS 84-1] gi|300411045|gb|EFJ94583.1| peptide chain release factor 1 [Escherichia coli MS 45-1] gi|300421749|gb|EFK05060.1| peptide chain release factor 1 [Escherichia coli MS 182-1] gi|300449124|gb|EFK12744.1| peptide chain release factor 1 [Escherichia coli MS 116-1] gi|300455557|gb|EFK19050.1| peptide chain release factor 1 [Escherichia coli MS 21-1] gi|300463712|gb|EFK27205.1| peptide chain release factor 1 [Escherichia coli MS 187-1] gi|300526318|gb|EFK47387.1| peptide chain release factor 1 [Escherichia coli MS 119-7] gi|300530676|gb|EFK51738.1| peptide chain release factor 1 [Escherichia coli MS 107-1] gi|300839170|gb|EFK66930.1| peptide chain release factor 1 [Escherichia coli MS 124-1] gi|300846326|gb|EFK74086.1| peptide chain release factor 1 [Escherichia coli MS 78-1] gi|301073722|gb|EFK88528.1| peptide chain release factor 1 [Escherichia coli MS 146-1] gi|305852528|gb|EFM52976.1| peptide chain release factor 1 [Escherichia coli NC101] gi|306909752|gb|EFN40246.1| peptide chain release factor 1 [Escherichia coli W] gi|307553266|gb|ADN46041.1| peptide chain release factor 1 [Escherichia coli ABU 83972] gi|307627266|gb|ADN71570.1| peptide chain release factor 1 [Escherichia coli UM146] gi|308122207|gb|EFO59469.1| peptide chain release factor 1 [Escherichia coli MS 145-7] gi|308922915|gb|EFP68429.1| peptide chain release factor 1 [Shigella dysenteriae 1617] gi|309701510|emb|CBJ00817.1| peptide chain release factor 1 [Escherichia coli ETEC H10407] gi|310335995|gb|EFQ01195.1| peptide chain release factor 1 [Escherichia coli 1827-70] gi|312945841|gb|ADR26668.1| peptide chain release factor 1 [Escherichia coli O83:H1 str. NRG 857C] gi|313649400|gb|EFS13831.1| peptide chain release factor 1 [Shigella flexneri 2a str. 2457T] gi|315060462|gb|ADT74789.1| peptide chain release factor RF-1 [Escherichia coli W] gi|315135847|dbj|BAJ43006.1| peptide chain release factor 1 [Escherichia coli DH1] gi|315288568|gb|EFU47966.1| peptide chain release factor 1 [Escherichia coli MS 110-3] gi|315290789|gb|EFU50161.1| peptide chain release factor 1 [Escherichia coli MS 153-1] gi|315297345|gb|EFU56625.1| peptide chain release factor 1 [Escherichia coli MS 16-3] gi|315615947|gb|EFU96573.1| peptide chain release factor 1 [Escherichia coli 3431] gi|320181782|gb|EFW56692.1| Peptide chain release factor 1 [Shigella boydii ATCC 9905] gi|320188003|gb|EFW62670.1| Peptide chain release factor 1 [Escherichia coli O157:H7 str. EC1212] gi|320195779|gb|EFW70404.1| Peptide chain release factor 1 [Escherichia coli WV_060327] gi|320199250|gb|EFW73841.1| Peptide chain release factor 1 [Escherichia coli EC4100B] gi|320637363|gb|EFX07170.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. G5101] gi|320643225|gb|EFX12426.1| peptide chain release factor 1 [Escherichia coli O157:H- str. 493-89] gi|320648162|gb|EFX16838.1| peptide chain release factor 1 [Escherichia coli O157:H- str. H 2687] gi|320653996|gb|EFX22070.1| peptide chain release factor 1 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320659475|gb|EFX27044.1| peptide chain release factor 1 [Escherichia coli O55:H7 str. USDA 5905] gi|320664612|gb|EFX31763.1| peptide chain release factor 1 [Escherichia coli O157:H7 str. LSU-61] gi|323153190|gb|EFZ39452.1| peptide chain release factor 1 [Escherichia coli EPECa14] gi|323162264|gb|EFZ48122.1| peptide chain release factor 1 [Escherichia coli E128010] gi|323168381|gb|EFZ54062.1| peptide chain release factor 1 [Shigella sonnei 53G] gi|323179274|gb|EFZ64844.1| peptide chain release factor 1 [Escherichia coli 1180] gi|323185627|gb|EFZ70988.1| peptide chain release factor 1 [Escherichia coli 1357] gi|323378974|gb|ADX51242.1| peptide chain release factor 1 [Escherichia coli KO11] gi|323937932|gb|EGB34196.1| peptide chain release 1 [Escherichia coli E1520] gi|323942490|gb|EGB38658.1| peptide chain release [Escherichia coli E482] gi|323947506|gb|EGB43510.1| peptide chain release 1 [Escherichia coli H120] gi|323949672|gb|EGB45558.1| peptide chain release [Escherichia coli H252] gi|323953934|gb|EGB49733.1| peptide chain release [Escherichia coli H263] gi|323962789|gb|EGB58367.1| peptide chain release [Escherichia coli H489] gi|323973391|gb|EGB68578.1| peptide chain release [Escherichia coli TA007] gi|323977218|gb|EGB72305.1| peptide chain release [Escherichia coli TW10509] gi|324006000|gb|EGB75219.1| peptide chain release factor 1 [Escherichia coli MS 57-2] gi|324015639|gb|EGB84858.1| peptide chain release factor 1 [Escherichia coli MS 60-1] gi|324017539|gb|EGB86758.1| peptide chain release factor 1 [Escherichia coli MS 117-3] gi|324117241|gb|EGC11148.1| peptide chain release [Escherichia coli E1167] gi|325497513|gb|EGC95372.1| peptide chain release factor 1 [Escherichia fergusonii ECD227] gi|326342759|gb|EGD66529.1| Peptide chain release factor 1 [Escherichia coli O157:H7 str. 1044] gi|326346388|gb|EGD70125.1| Peptide chain release factor 1 [Escherichia coli O157:H7 str. 1125] gi|330911076|gb|EGH39586.1| peptide chain release factor 1 [Escherichia coli AA86] gi|331038539|gb|EGI10759.1| peptide chain release factor 1 [Escherichia coli H736] gi|331045281|gb|EGI17408.1| peptide chain release factor 1 [Escherichia coli M605] gi|331061036|gb|EGI33000.1| peptide chain release factor 1 [Escherichia coli TA143] gi|331065180|gb|EGI37075.1| peptide chain release factor 1 [Escherichia coli TA271] gi|331075680|gb|EGI46978.1| peptide chain release factor 1 [Escherichia coli H591] gi|331080331|gb|EGI51510.1| peptide chain release factor 1 [Escherichia coli H299] gi|332092251|gb|EGI97328.1| peptide chain release factor 1 [Shigella boydii 5216-82] gi|332098194|gb|EGJ03167.1| peptide chain release factor 1 [Shigella dysenteriae 155-74] gi|332101951|gb|EGJ05297.1| peptide chain release factor RF-1 [Shigella sp. D9] gi|332757864|gb|EGJ88191.1| peptide chain release factor 1 [Shigella flexneri 4343-70] gi|332759429|gb|EGJ89737.1| peptide chain release factor 1 [Shigella flexneri 2747-71] gi|332760305|gb|EGJ90595.1| peptide chain release factor 1 [Shigella flexneri K-671] gi|332767445|gb|EGJ97639.1| peptide chain release factor 1 [Shigella flexneri 2930-71] gi|333005050|gb|EGK24570.1| peptide chain release factor 1 [Shigella flexneri VA-6] gi|333005356|gb|EGK24874.1| peptide chain release factor 1 [Shigella flexneri K-218] gi|333007544|gb|EGK27022.1| peptide chain release factor 1 [Shigella flexneri K-272] gi|333019207|gb|EGK38494.1| peptide chain release factor 1 [Shigella flexneri K-304] gi|333019924|gb|EGK39196.1| peptide chain release factor 1 [Shigella flexneri K-227] Length = 360 Score = 277 bits (707), Expect = 2e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|91205113|ref|YP_537468.1| peptide chain release factor 1 [Rickettsia bellii RML369-C] gi|119361596|sp|Q1RJT5|RF1_RICBR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91068657|gb|ABE04379.1| Peptide chain release factor RF-1 [Rickettsia bellii RML369-C] Length = 357 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 177/348 (50%), Positives = 247/348 (70%), Gaps = 1/348 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + ++ ++ ++S + ++K ++EYA + I+ KI Y++ K E ++ + Sbjct: 8 DNLTKILGKYEDLSEKLSSGIGGEEFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFK 67 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D ++ + E+ +E + LE + LLPKD D KS I+EIRAGTGG EAA Sbjct: 68 QEPSLDKATLEMIEEEIRNLEDSLPTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAA 127 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF LF MY+RYA L+ W+ E+LS + GGYKE+ A+I G+ VFS++KFESGVHRVQ Sbjct: 128 LFAAKLFNMYQRYAELKGWRFEILSIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQ 187 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE+ GR+HTSAATVAVLPE ++D+ + +D+RIDT RASG+GGQHVNTTDSAVRI Sbjct: 188 RVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRI 247 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ NR+ QIGSGDRSER Sbjct: 248 THIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKDQERANNRRKQIGSGDRSER 307 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 IRTYNF QGR++DHRINLTLYK++ V+ G +D+ I L+ +AK + Sbjct: 308 IRTYNFPQGRVSDHRINLTLYKIDEVINGQLDEFIEALIANDEAKKLS 355 >gi|224026398|ref|ZP_03644764.1| hypothetical protein BACCOPRO_03154 [Bacteroides coprophilus DSM 18228] gi|224019634|gb|EEF77632.1| hypothetical protein BACCOPRO_03154 [Bacteroides coprophilus DSM 18228] Length = 369 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 227/362 (62%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + I++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPNVIGDQKRYVKLTKEYKELGDIMAARKEYLQCLNGLEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A+ E A E I +LE EI LL+P D DD++ ILEIR GTGG Sbjct: 69 MMMAE--NDPEMKEMAREEAAACEARIPQLEEEIKLLLVPADPQDDRNAILEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV ++++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 127 EAAIFAGDLFRMYSKYCESKGWKLEVSNANEGAAGGFKEIICSVTGDKVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 247 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 307 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 366 Query: 355 AS 356 + Sbjct: 367 SE 368 >gi|312897943|ref|ZP_07757356.1| peptide chain release factor 1 [Megasphaera micronuciformis F0359] gi|310620977|gb|EFQ04524.1| peptide chain release factor 1 [Megasphaera micronuciformis F0359] Length = 361 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 171/359 (47%), Positives = 252/359 (70%), Gaps = 6/359 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++N+F ++E R+S+ + D + KLT+E+A+++PII Y Sbjct: 1 MFIDKVQAVENKFIDLEQRISDPSVIARQDEWQKLTKEHASLAPIIETFRKYKDVSATIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I D SD+E+ +A+ E+ + KE LE E++ L+LPKD +DDK+ I+EIR G Sbjct: 61 DDKEIIAD-GSDAELTAMAKEELSELTKEQEALEEELHVLMLPKDPNDDKNVIMEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAA+F GDLFRMY +Y + WK ++SS+ + GGYKE++ ++ G GV+ ++K+E Sbjct: 120 GGDEAAIFAGDLFRMYSKYIEKQKGWKASIISSNAPELGGYKEVIFSVEGDGVYGKLKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTS ATVAVLPEA ++++++ +ED+R+D RASG+GGQHVN Sbjct: 180 SGVHRVQRVPVTESGGRIHTSTATVAVLPEAEDVEINLNMEDVRVDYFRASGAGGQHVNK 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+THIP+GI+V E+SQ +NR +A++VL+ARL + E + R+ Q+G Sbjct: 240 TSSAVRMTHIPSGIVVECQDERSQLENRAKAVRVLKARLLAQAEEEANAEVTEARRSQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSER+RTYN+ QGR+TDHRINLTLYKLE ++ G ID+ I L A +A+++ A E Sbjct: 300 TGDRSERVRTYNYPQGRVTDHRINLTLYKLENIMNGDIDEFIQALAEARRAELMKEAEE 358 >gi|325269739|ref|ZP_08136350.1| peptide chain release factor RF1 [Prevotella multiformis DSM 16608] gi|324987940|gb|EGC19912.1| peptide chain release factor RF1 [Prevotella multiformis DSM 16608] Length = 370 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 219/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ R+ E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 9 QKLDGLEARYEEVSTLITDPSVIADQKRYVKLTKEYKDLGDIMDARRRYVNCLTTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD+E++++A+ E+ E ++E EI LL+PKD +D K+ +EIR G GG Sbjct: 69 DIIA-NESDAEMKEMAREELSENEGLQPKIEEEIKLLLVPKDPEDGKNVQMEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RY + WK+ V S S+ GG+KEI + G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKRYCDKKGWKLSVTSVSEGAVGGFKEIDFAVEGENVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYIDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ + G I ++I+ L A A+ + Sbjct: 308 TLVSTGDRSAKIRTYNFPQGRVTDHRIGFTTHDLQGFMNGDIQEMIDALTVAENAEKLKE 367 >gi|297585440|ref|YP_003701220.1| peptide chain release factor 1 [Bacillus selenitireducens MLS10] gi|297143897|gb|ADI00655.1| peptide chain release factor 1 [Bacillus selenitireducens MLS10] Length = 356 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 171/353 (48%), Positives = 246/353 (69%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ ++ + + ++ KL ++E + + + Y K + +D Sbjct: 3 DRLESVENRYEQLNELLMDPAVMNDTDKLRDYSKEQSGLQETVEAYRQYKDIKSQVEDTK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ DH D E+R++A++E+ +E E+ ELE ++ LL+PKD +DDK+ I+E+R GG Sbjct: 63 EMLRDHLDD-EMREMAKMELDELETELGELEEKLRVLLIPKDPNDDKNVIVEVRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK +V+ +S+ GGYKEIV TI+G G +S+MKFE+G H Sbjct: 122 EAALFAGDLYRMYHRYAESQGWKTDVIEASETGIGGYKEIVFTINGTGAYSKMKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS ATVAVLPEA +++VDI +DIR+D +SG GGQ VNTT SA Sbjct: 182 RVQRVPATESGGRIHTSTATVAVLPEAEDVEVDISEKDIRVDRFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E NRK +G+GDR Sbjct: 242 VRLTHEPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKYQREAQAEYDENRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D+II L+ Q++M+ +A Sbjct: 302 SERIRTYNFPQSRVTDHRIGLTIQKLDQILEGKLDEIIEALIVEEQSRMMENA 354 >gi|312112637|ref|YP_003990953.1| peptide chain release factor 1 [Geobacillus sp. Y4.1MC1] gi|311217738|gb|ADP76342.1| peptide chain release factor 1 [Geobacillus sp. Y4.1MC1] Length = 358 Score = 277 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 239/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ ++ + + ++ KL ++E + + + Y +++ D Sbjct: 3 ERLEAVEERYEKLNQLLMDPEVINDPKKLRDYSKEQSDLEETVQTYREYKSVRKQLDDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++ + E+ +E+ EL N++ LLLPKD +D+K+ I+EIRA GG Sbjct: 63 AML-EEKLDPEMREMVKEEIDELEQRQEELINKLKILLLPKDPNDEKNVIMEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ +S GGYKEI+ TI+G+G +S++K+E+G H Sbjct: 122 EAALFAGDLYRMYTRYAESQGWKTEVIEASPTGLGGYKEIIFTINGKGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE EI+V+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEMEEIEVEINEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHIPTGIVVTCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ VL G +D+II L+ QAK + A+ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGSLDEIIEALILDDQAKKLEQAN 355 >gi|332342793|gb|AEE56127.1| peptide chain release factor protein PrfA [Escherichia coli UMNK88] Length = 360 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDIKPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|331002270|ref|ZP_08325789.1| peptide chain release factor 1 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411364|gb|EGG90780.1| peptide chain release factor 1 [Lachnospiraceae oral taxon 107 str. F0167] Length = 355 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 251/355 (70%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + D+ + EI ++ + + KL +E + ++P++ Y + KQ ++D Sbjct: 3 DNLEDIVIHYDEIMAELAGGDVANDQNRFRKLMKEQSDLAPLVETYGEYKKAKQLQEDAL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ +D E++++A+ E+ ++ EL ++ LLLPKD +D+K+ +LEIRAG GG Sbjct: 63 EMLEM--NDDEMKEMAKEELAEGKRLEEELSEKLKILLLPKDPNDEKNIMLEIRAGAGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L+RMY YA + WKVE++ ++N GGYKE+VA +SG+G +S++K+ESGVH Sbjct: 121 EAALFAMQLYRMYVHYAETQNWKVEMIDVNENGIGGYKEVVAMVSGKGAYSKLKYESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS A+VAV+PEA E+DV I + D+RID MRASG+GGQ VNTTDSA Sbjct: 181 RVQRVPETESGGRIHTSTASVAVMPEAEEVDVQIDMNDVRIDVMRASGNGGQCVNTTDSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LR++LY++E ++ + +A+R+ QIG+GDR Sbjct: 241 VRLTHYPTGIVIYSQTEKSQLQNKEKAFALLRSKLYEIELEKKQSAEAADRRSQIGTGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRINLTLYKL+ ++ G I ++I+ + A QA + +E Sbjct: 301 SEKIRTYNFPQGRVTDHRINLTLYKLDKIMNGDIQELIDGCIAADQAAKLAKLNE 355 >gi|329965246|ref|ZP_08302176.1| peptide chain release factor 1 [Bacteroides fluxus YIT 12057] gi|328523266|gb|EGF50366.1| peptide chain release factor 1 [Bacteroides fluxus YIT 12057] Length = 370 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQILSGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R++A+ E+ + ELE +I LL+P D D ++ ILEIR GTGG Sbjct: 69 EIMA-NETDPEMREMAREELDTCQSRQPELEEQIKLLLVPADPQDSRNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + W++E+ S+++ GG+KEIV +I+G GV+ MK+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCETKGWRMEISSANEGSAGGFKEIVCSITGDGVYGTMKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|253702392|ref|YP_003023581.1| peptide chain release factor 1 [Geobacter sp. M21] gi|251777242|gb|ACT19823.1| peptide chain release factor 1 [Geobacter sp. M21] Length = 359 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 176/359 (49%), Positives = 258/359 (71%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++I +L+ RF E+E +S+ + + KL++E++ ++ +++ Y + + Sbjct: 1 MSMFEKIAELERRFEELESLLSDPEVLANQTEFRKLSKEHSGLAELVAAYREYKKILSDI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D ++ + D E+R++AQ E+L++E ELE EI LLLPKD +DDK+ +LEIRAG Sbjct: 61 DDNKELLKEP--DQEMREMAQAELLSLEARREELEGEIKLLLLPKDPNDDKNVVLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDLFRMY R+A +W+VE++S+S+++ GG+KE++A + G GVF+++K+E Sbjct: 119 TGGDESALFAGDLFRMYSRFAETNRWRVEIISASESEKGGFKEVIALVEGTGVFAKLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TEA GR+HTSA TVAV+PEA ++D+DI D++ID R+SG+GGQHVNT Sbjct: 179 SGTHRVQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG +V E+SQ +NR +AMKVL++R+ D + +A+RK Q+G Sbjct: 239 TDSAVRITHLPTGTVVACQEERSQIKNRAKAMKVLKSRILDNILMEQNAKLAADRKSQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I + L +Q + + + SE Sbjct: 299 SGDRSERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIAEIADSLRAHYQMEALQAQSE 357 >gi|189461883|ref|ZP_03010668.1| hypothetical protein BACCOP_02549 [Bacteroides coprocola DSM 17136] gi|189431477|gb|EDV00462.1| hypothetical protein BACCOP_02549 [Bacteroides coprocola DSM 17136] Length = 369 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEVSTLITDPNVISDQKRYVKLTKEYKELGDLMQARKEYLQCLNGLEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A+ E A E + +LE EI LL+P D DD++ ILEIR GTGG Sbjct: 69 MMMAE--NDPEMKEMAREEAAACEARLPQLEEEIKLLLVPADPQDDRNAILEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 127 EAAIFAGDLFRMYSKYCESKGWKLEVSSANEGAAGGFKEIICSVTGDKVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 247 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 307 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 366 Query: 355 AS 356 + Sbjct: 367 SE 368 >gi|229823150|ref|ZP_04449219.1| hypothetical protein GCWU000282_00447 [Catonella morbi ATCC 51271] gi|229787316|gb|EEP23430.1| hypothetical protein GCWU000282_00447 [Catonella morbi ATCC 51271] Length = 359 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L RF E+ +S+ + +LT E A +SP ++KI Y Q +QE +D Sbjct: 3 EQLDALIFRFEELHELLSDPEVISDSKRLRELTIEEADLSPKVAKIKRYKQVQQEIKDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D+++ +LA++E+ ++ E LE EI ++LP+D +D K+ I+EIR GG Sbjct: 63 EMLGE-GLDADMAELAKMELAELKAEKPRLEEEIKVMMLPEDPNDGKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL MY RYA + WKVEVL ++ GGYKE+ I+G V+S++KFE+G H Sbjct: 122 EAQLFAGDLLNMYTRYADSQGWKVEVLDANITGIGGYKEVSLMITGHKVYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS ATV V+PEA E+D+D+ DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPETESQGRVHTSTATVVVMPEAEEVDLDLKDADIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V E+SQ +NR +AMKVLRAR+YD+ + E +NRKL +G+GDR Sbjct: 242 VRLTHLPTGVVVAMQDERSQLKNREKAMKVLRARVYDMLQSEAQAEYDSNRKLAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI LT+ +L+ ++ G +D+II+ L+ Q + + + Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQQLDAIMSGKLDEIIDGLVLFDQTQKLEELN 355 >gi|331652249|ref|ZP_08353268.1| peptide chain release factor 1 [Escherichia coli M718] gi|331050527|gb|EGI22585.1| peptide chain release factor 1 [Escherichia coli M718] Length = 360 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYADARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|968930|gb|AAC43437.1| peptide chain release factor 1 [Escherichia coli] Length = 360 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|312142772|ref|YP_003994218.1| peptide chain release factor 1 [Halanaerobium sp. 'sapolanicus'] gi|311903423|gb|ADQ13864.1| peptide chain release factor 1 [Halanaerobium sp. 'sapolanicus'] Length = 357 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 163/357 (45%), Positives = 242/357 (67%), Gaps = 6/357 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISP---IISKISIYDQKKQ 57 M L +++ L +++ ++ ++S+ ++ K + + I+ K Y + KQ Sbjct: 1 MFDLD-EKLDKLVDKYQDLNKKLSDPEVINDSSKYQKLLKKHAKLKKIVDKYKEYKEAKQ 59 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D +I + D E+++LA++E+ ++ +LE E+ +LLP D +D+K+ I+EIR Sbjct: 60 GIEDAEEMI-EMEDDPEMQELAELEIEELQPTKEKLEEELPIMLLPDDPNDEKNVIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 +G GG EAALF DLFRMY RY+ + WKVEV++++ + GGYKEI+ T+ G V+ +K Sbjct: 119 SGAGGDEAALFAADLFRMYSRYSENQGWKVEVMNANLSGVGGYKEIIFTVEGSEVYKYLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVP+TE+SGR+HTS ATVAVLPEA E+D+DI D+RID R+SG GGQ V Sbjct: 179 YESGVHRVQRVPSTESSGRIHTSTATVAVLPEAEEVDIDIDPNDLRIDVYRSSGPGGQSV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH PT I V EKSQH+N+ +AM++LRAR+ + +R+ RK Q Sbjct: 239 NTTDSAVRITHEPTEITVSCQDEKSQHKNKAKAMRILRARVQEKIESEKQAKRAEARKSQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +G+GDRSE+IRTYNF QGR++DHRINLT+++L+ +L G + +I+ L+ K + Sbjct: 299 VGTGDRSEKIRTYNFPQGRVSDHRINLTVHQLDKILDGDLAPVIDALIEEDNIKRLE 355 >gi|119945323|ref|YP_943003.1| peptide chain release factor 1 [Psychromonas ingrahamii 37] gi|166223592|sp|A1SV89|RF1_PSYIN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119863927|gb|ABM03404.1| bacterial peptide chain release factor 1 (bRF-1) [Psychromonas ingrahamii 37] Length = 363 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 158/362 (43%), Positives = 237/362 (65%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + ++ + Y +LT+EYA + ++ Y + Sbjct: 1 MKASIVAKLEVLVERYEEVQALLGDPGTISDQNKYRELTKEYAQLEVVVLSFKKYQSAQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + D ++R++A+ E+ +K + +L ++ LLLPKD +DD++C LEIR Sbjct: 61 DLAVAEM--MSDDDDPDMREMAKEEIKEAKKTVEKLAADLQILLLPKDPNDDRNCYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F G+LFRMY +YA + W+VEV++S+ ++ GGYKE++A I G G + MK Sbjct: 119 AGAGGDEAAIFAGNLFRMYSKYAESKGWRVEVMNSNASEQGGYKELIAKIDGEGAYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TV V+PE E + D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVPEAEAISINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+PTG +V ++SQH+NR +AM VL++RL E ++ E R+ Sbjct: 239 VNKTDSAVRLTHLPTGTVVECQDQRSQHKNRAQAMSVLQSRLQQAEDEKSHAEEQTIRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYN+ QGR++DHRINLT+Y+L VL+G ++ + P+L QA + + Sbjct: 299 LVASGDRSERIRTYNYPQGRVSDHRINLTVYRLNEVLEGDLNALHEPILLEDQADKLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SQ 360 >gi|325474790|gb|EGC77976.1| peptide chain release factor 1 [Treponema denticola F0402] Length = 361 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 252/355 (70%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +L+ R E+E + + Y + E++ +S ++ + Y +++ +D Sbjct: 1 MKERLDNLRKRLVEVEKEVENPNLIKDVAKYKETMREHSYLSKLMEEYDNYLSIEKQIED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I + SD+E++++A+ E+ ++E + E ++ LL+P D ++K+ I+EIR GTG Sbjct: 61 SKLLIQEE-SDAELKEMAREELHSLEAAFEKSEADLKMLLIPPDPLEEKNIIMEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA ++ WK EVLS ++ + GGYKEI +ISG+ V+ +++ESG Sbjct: 120 GDEAALFAADLFRMYTHYAEMKNWKYEVLSLNETELGGYKEITFSISGKYVYGSLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE SGR+HTSA TVAVLPEA E +++I ED+RID MRA G GGQ VNTTD Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIEINQEDLRIDVMRAGGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V EKSQ +N+ +AM+VLR+RLYD+E + ER+ NRK Q+GSG Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDLEESKKQAERAQNRKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRINLTLYKL+ V+QG +D++I+ L A + +M+ +A Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDSVMQGSLDELIDALCIAAREEMMKAA 354 >gi|89900074|ref|YP_522545.1| peptide chain release factor 1 [Rhodoferax ferrireducens T118] gi|119361589|sp|Q21YY9|RF1_RHOFD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|89344811|gb|ABD69014.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodoferax ferrireducens T118] Length = 366 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 163/361 (45%), Positives = 229/361 (63%), Gaps = 5/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M +Q+ +R E+E +S + + L+ E+ + + S+ + Y Q + Sbjct: 1 MKPFLRQQLARYTDRLGELEFLLSREDIMQDMKQFLLLSREHTEVGAVASRWARYQQLEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ +AQ E+ E+++LENE+ +LLPKD DD ++ +EIR Sbjct: 61 DLSGAQELLRGSVDDPDMTAMAQEEIDNASAELQKLENELQRMLLPKDPDDARNAFVEIR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RY R WK E++S S ++ GGYKE+V I G V+ +K Sbjct: 121 AGTGGDESALFAADLLRMYTRYCERRGWKAEIISESPSELGGYKEVVIKIEGDHVYGALK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAVL + + I D+RIDT RASG+GGQH Sbjct: 181 FESGGHRVQRVPVTETQGRIHTSACTVAVLAEPDEAVAIQINPADLRIDTYRASGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTGI+ +SQH N+ +A+KVL AR+++ +R A + +A RK Sbjct: 241 INKTDSAVRITHLPTGIVAECQDGRSQHSNKAQALKVLTARIHEKDRSERAAKDAAERKG 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G +DD++ L A+ + + Sbjct: 301 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLTIMEGDLDDVVQALQAFEAAQQLAAL 360 Query: 356 S 356 Sbjct: 361 E 361 >gi|148656981|ref|YP_001277186.1| peptide chain release factor 1 [Roseiflexus sp. RS-1] gi|148569091|gb|ABQ91236.1| bacterial peptide chain release factor 1 (bRF-1) [Roseiflexus sp. RS-1] Length = 364 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 153/363 (42%), Positives = 224/363 (61%), Gaps = 8/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQ 57 M ++ ++ R+ E+ M++ ++L E + P++ Y ++ Sbjct: 1 MALALIDKLANVAARYNELLDLMAQPEIATDPVRLQQYVREQRDLEPLVEAYQAYRDVER 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +D ++ + +D E+R LAQ E+ + + LE +I LLLP+D +D K+ I+E+R Sbjct: 61 QIEDTRFLLA-NETDPEVRQLAQEELDHLIERRARLETDIKVLLLPRDPNDSKNVIMELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG EAALF DLFRMY RYA R W V+V+S+++N GGYKEIV I G G +SR+K Sbjct: 120 QGEGGDEAALFAADLFRMYTRYAEQRGWDVDVISATENGPGGYKEIVFEIKGEGAYSRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +E GVHRVQRVPATEA GR+HTS ATVAVLPE E ++++ D R+D R+SG GGQ V Sbjct: 180 YEGGVHRVQRVPATEARGRIHTSTATVAVLPEIEETEIELNPSDYRVDVFRSSGHGGQGV 239 Query: 238 NTTDSAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 NTTDSAVRI + P ++ +SQ +N+ A+ VLRARLY E ++ E +R Sbjct: 240 NTTDSAVRIVYKPGTPEEIVVTCQDSRSQLKNKASALAVLRARLYAREEEKRRKELGESR 299 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 Q+G+G+R+E+IRTYNF Q R+TDHRI L +L G +D +I+ L+ A A+ + Sbjct: 300 LAQVGAGERAEKIRTYNFPQDRVTDHRIGQNFSNLPGILDGDLDRLIDALIIADNAERLE 359 Query: 354 SAS 356 + + Sbjct: 360 AVA 362 >gi|323698089|ref|ZP_08110001.1| peptide chain release factor 1 [Desulfovibrio sp. ND132] gi|323458021|gb|EGB13886.1| peptide chain release factor 1 [Desulfovibrio desulfuricans ND132] Length = 355 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 170/354 (48%), Positives = 256/354 (72%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++ ++ +E ++E + Y K+++ +A +S ++ Y Q QE D Sbjct: 4 KLEEIEEKYVLLEQELAEPDIFNDQERYKKVSKAHADLSEVVEAFRRYKQLSQELDDNRE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D EIR++A+ E+ +E E+ E+E ++ LLLPKD D+K+ ILEIRAGTGG E Sbjct: 64 MLNDA--DPEIREMAKAEIDDLEGELPEIEEQLKVLLLPKDPMDEKNIILEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DL+RMY RYA + WKVE +S++ GGYKE++A+ISG V+S++K+ESG HR Sbjct: 122 AALFAADLYRMYTRYAEINHWKVEEMSANHTGSGGYKEVIASISGDKVYSKLKYESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSA TVA++PEA E+D+D+ ED+R+D R+SG GGQ VNTTDSA+ Sbjct: 182 VQRVPATESQGRIHTSAVTVAIMPEAEEVDIDLRPEDLRVDVFRSSGPGGQSVNTTDSAI 241 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIP+G+ ++ EKSQH+N+ +A+KVLR+RL +E+ + E+ ANR+ Q+GSGDRS Sbjct: 242 RVTHIPSGMIVICQDEKSQHKNKAKALKVLRSRLLQIEQDKAKAEQEANRRSQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ QGR++DHRINLTL++L +++G + D+ + L++ QA+ + + Sbjct: 302 ERIRTYNYPQGRVSDHRINLTLHQLPQIMEGELQDLTDALISYFQAEALKRQGD 355 >gi|16801748|ref|NP_472016.1| peptide chain release factor 1 [Listeria innocua Clip11262] gi|116873908|ref|YP_850689.1| peptide chain release factor 1 [Listeria welshimeri serovar 6b str. SLCC5334] gi|20139333|sp|Q927V0|RF1_LISIN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|123466615|sp|A0ALM8|RF1_LISW6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|16415223|emb|CAC97913.1| prf1 [Listeria innocua Clip11262] gi|116742786|emb|CAK21910.1| peptide chain release factor 1 [Listeria welshimeri serovar 6b str. SLCC5334] gi|313617102|gb|EFR89654.1| peptide chain release factor 1 [Listeria innocua FSL S4-378] Length = 358 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 242/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNEQIDETR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKAELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|289435805|ref|YP_003465677.1| peptide chain release factor 1 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172049|emb|CBH28595.1| peptide chain release factor 1 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 358 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 240/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y + + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVEAYREYKNVNAQIDETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLSEKLDD-EMREMAKEEFTELQKEKAELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|313636275|gb|EFS02086.1| peptide chain release factor 1 [Listeria seeligeri FSL S4-171] Length = 358 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 240/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y + + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVEAYREYKNVNAQIDETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLSEKLDD-EMREMAKEEFAELQKEKAELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D++I+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEVIDALILEDQTSKLEHLND 356 >gi|295400673|ref|ZP_06810650.1| peptide chain release factor 1 [Geobacillus thermoglucosidasius C56-YS93] gi|294977254|gb|EFG52855.1| peptide chain release factor 1 [Geobacillus thermoglucosidasius C56-YS93] Length = 358 Score = 276 bits (706), Expect = 3e-72, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 238/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ ++ + + ++ KL ++E + + + Y ++ D Sbjct: 3 ERLEAVEERYEKLNQLLMDPEVINDPKKLRDYSKEQSDLEETVQTYREYKSVCKQLDDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++ + E+ +E+ EL N++ LLLPKD +D+K+ I+EIRA GG Sbjct: 63 AML-EEKLDPEMREMVKEEIDELEQRQEELINKLKILLLPKDPNDEKNVIMEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ +S GGYKEI+ TI+G+G +S++K+E+G H Sbjct: 122 EAALFAGDLYRMYTRYAESQGWKTEVIEASPTGLGGYKEIIFTINGKGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE EI+V+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEMEEIEVEINEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHIPTGIVVTCQDEKSQIKNKEKAMKVLRARIYDKYQQEARAEYDQTRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ VL G +D+II L+ QAK + A+ Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQVLDGSLDEIIEALILDDQAKKLEQAN 355 >gi|218129333|ref|ZP_03458137.1| hypothetical protein BACEGG_00910 [Bacteroides eggerthii DSM 20697] gi|217988510|gb|EEC54831.1| hypothetical protein BACEGG_00910 [Bacteroides eggerthii DSM 20697] Length = 370 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 225/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMKARKEYMQVLSGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D+E+R++A+ E+ A + ELE +I LL+P D D ++ ILEIR G GG Sbjct: 69 EIIA-NETDAEMREMAREELDACQTRQPELEEQIKLLLVPADPQDSRNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+++ S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCETKGWKLDISSANEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|256830555|ref|YP_003159283.1| peptide chain release factor 1 [Desulfomicrobium baculatum DSM 4028] gi|256579731|gb|ACU90867.1| peptide chain release factor 1 [Desulfomicrobium baculatum DSM 4028] Length = 353 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 180/354 (50%), Positives = 243/354 (68%), Gaps = 6/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L ++ E+E MS Y K+ +++A + I+ +Y +E + Sbjct: 1 MVDKLESLAAKYRELEREMSTPEIFQDQERYRKIAKKHAELDEIVKAFELYKTLLREMAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D SD E+ ++AQ E++ ++ I E E + LL PKD D+K+ ILEIRAGTG Sbjct: 61 NQELAKD--SDPELCEMAQAEIVLLKAAIGEQEKVLKQLLTPKDPLDEKNIILEIRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFV D+FRMY RYA L W+VEVLSSSD GG+KEI+A++SG V+S++K+ESG Sbjct: 119 GEEAALFVADIFRMYSRYAELHSWRVEVLSSSDTGTGGFKEIIASVSGTNVYSKLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVPATE+ GR+HTSA TVA+LPEA E+DV I DIR+D R+SG GGQ VNTTD Sbjct: 179 AHRVQRVPATESQGRIHTSAITVAILPEAEEVDVKIDPNDIRVDVFRSSGPGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITH+ TG++V EKSQH+N+ +A+KVLR+RL + NRK Q+GSG Sbjct: 239 SAIRITHLATGLVVICQDEKSQHKNKAKALKVLRSRLLQAAQDETKKAYDDNRKSQVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYN+ QGR+TDHRINLTLY L+ ++G+IDDII+ L+ +QA+ + Sbjct: 299 DRSERIRTYNYPQGRVTDHRINLTLYNLDQAMEGHIDDIIDGLVQHYQAEAMKE 352 >gi|157827554|ref|YP_001496618.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389] gi|166223596|sp|A8GXI1|RF1_RICB8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157802858|gb|ABV79581.1| peptide chain release factor 1 [Rickettsia bellii OSU 85-389] Length = 357 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 177/348 (50%), Positives = 247/348 (70%), Gaps = 1/348 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + ++ ++ ++S + ++K ++EYA + I+ KI Y++ K E ++ + Sbjct: 8 DNLTKILGKYEDLSEKLSSGIGGEEFVKASKEYADLEDIVQKIKEYNKAKAELEEANNFK 67 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D ++ + E+ +E + LE + LLPKD D KS I+EIRAGTGG EAA Sbjct: 68 QEPSLDKATLEMIEEEIRNLEDSLPTLERSVKIALLPKDEADSKSAIIEIRAGTGGEEAA 127 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF LF MY+RYA L+ W+ E+LS + GGYKE+ A+I G+ VFS++KFESGVHRVQ Sbjct: 128 LFAAKLFNMYQRYAELKGWRFEILSIDETGIGGYKEVSASIKGKDVFSKLKFESGVHRVQ 187 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE+ GR+HTSAATVAVLPE ++D+ + +D+RIDT RASG+GGQHVNTTDSAVRI Sbjct: 188 RVPETESQGRIHTSAATVAVLPEVEDVDIKLEEKDLRIDTYRASGAGGQHVNTTDSAVRI 247 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ NR+ QIGSGDRSER Sbjct: 248 THIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKDQERANNRREQIGSGDRSER 307 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 IRTYNF QGR++DHRINLTLYK++ V+ G +D+ I L+ +AK + Sbjct: 308 IRTYNFPQGRVSDHRINLTLYKIDEVINGQLDEFIEALIANDEAKKLS 355 >gi|306833419|ref|ZP_07466546.1| peptide chain release factor RF1 [Streptococcus bovis ATCC 700338] gi|304424189|gb|EFM27328.1| peptide chain release factor RF1 [Streptococcus bovis ATCC 700338] Length = 359 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 158/359 (44%), Positives = 232/359 (64%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMALSKEEANTRETVTVYREYKQILQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I D D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 EDAEEMIKDAGGDPELEEMAKEELKDSKASKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DL +MY++YA + WK +V+ +S N GG KE+V +SG+ V+S++K+E Sbjct: 121 AGGDEAALFASDLLQMYQKYAENQGWKFDVMEASYNGVGGIKEVVVMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + NE+ A RK IG Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQNEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + ++ Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVIDALILFDQTKKLEELNQ 359 >gi|317153066|ref|YP_004121114.1| peptide chain release factor 1 [Desulfovibrio aespoeensis Aspo-2] gi|316943317|gb|ADU62368.1| peptide chain release factor 1 [Desulfovibrio aespoeensis Aspo-2] Length = 355 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 250/354 (70%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ D++ ++ ++E +++ + Y K+++ ++ +S ++ Y + ++ + Sbjct: 4 KLEDIEIKYDKLEYELAQPGIFNDQERYKKVSKAHSDLSDVVVLYREYKKCSKDLAENRE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D EIR++A+ E+ +E I LE +I LLLP D D+K+ ILEIRAGTGG E Sbjct: 64 MSHDP--DPEIREMAKAEISELEDRIETLEEKIKILLLPSDPMDEKNIILEIRAGTGGDE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF DL+RMY RYA +WKVE +SS+ GG KE++A+I+G V+S++K+ESG HR Sbjct: 122 AGLFAADLYRMYTRYAEANRWKVEEMSSNVTGSGGLKEVIASIAGDKVYSKLKYESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTS TVA++PEA E+D+D+ ED+R+D R+SG GGQ VNTTDSA+ Sbjct: 182 VQRVPATESQGRIHTSVVTVAIMPEAEEVDIDLRPEDVRVDVFRSSGPGGQSVNTTDSAI 241 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG+ ++ EKSQH+N+ +A+KVLR+RL +E+ + E A R++Q+GSGDRS Sbjct: 242 RVTHIPTGMIVICQDEKSQHKNKAKALKVLRSRLLQLEQDKAKAEEDAARRIQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR++DHRINLTL+KL +L+G +DD+ + L+ +QA+ + + Sbjct: 302 ERIRTYNFPQGRVSDHRINLTLHKLPQILEGELDDLTDALIGHYQAEAMKRQGD 355 >gi|153874211|ref|ZP_02002515.1| Peptide chain release factor 1 [Beggiatoa sp. PS] gi|152069325|gb|EDN67485.1| Peptide chain release factor 1 [Beggiatoa sp. PS] Length = 361 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 178/363 (49%), Positives = 245/363 (67%), Gaps = 8/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ +L +R E+ + ++E ++ + L++EYA I PI+ Y Q + Sbjct: 1 MKNSIRTKLENLSDRLQELNVLLTEPEIINNQNQFRSLSKEYAEIQPIVECFDKYRQNSE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D+++R LA+ E+ + E L+NE+ LLLPKD DD+ + LE+R Sbjct: 61 TQATAIEMLRDE--DADMRALAEEELSQAQTENERLDNELQLLLLPKDPDDNSNTFLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDL RMY RYA + W++E+LS + + GG+KEI+ I+G GV+SR K Sbjct: 119 AGTGGDEAALFAGDLVRMYSRYAEQQNWQIEILSQNHGEHGGFKEIIMRITGEGVYSRFK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE E++ DIR DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVAIMPEVEEVEEIEINNADIREDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+R+TH+PTGI++ E+SQH+NR RA +L+ARL ER+R E++ R+ Sbjct: 239 VNKTDSAIRLTHLPTGIVIECQDERSQHKNRARAKSLLQARLLAAERERQRAEKAETRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYNF QGRITDHRI LTLYKL+ +L QG +DD+I PL HQ ++ S Sbjct: 299 LVGSGDRSERIRTYNFPQGRITDHRIGLTLYKLDDILKQGNLDDLIEPLKREHQMDLLAS 358 Query: 355 ASE 357 + Sbjct: 359 MGD 361 >gi|222152015|ref|YP_002561175.1| peptide chain release factor 1 [Macrococcus caseolyticus JCSC5402] gi|254790887|sp|B9E8G1|RF1_MACCJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|222121144|dbj|BAH18479.1| peptide chain release factor 1 [Macrococcus caseolyticus JCSC5402] Length = 358 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 246/354 (69%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V KL ++E A + + Y + KQ+ ++ Sbjct: 3 DQLEIVEQRYEQLNELLSDPDIVSDTDKLREYSKEQADLQETVEVYREYKEVKQQLEEAL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ SD++ +++ + E+ ++ +I ELE + LL+PKD DDK+ ++EIR GG Sbjct: 63 EMMGEA-SDADEQEMIKEEINTLKPQIPELEERMKLLLIPKDPMDDKNVVMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY R++ + WK+EV+ +++ D GG+KEI I G+G +S++KFE+G H Sbjct: 122 EANIFAGDLFRMYSRFSEEQGWKIEVMETNEADHGGFKEISFIIIGKGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS ATVAVLPE +++++I ED+RI+T R+SGSGGQHVNTTDSA Sbjct: 182 RVQRIPTTESGGRIHTSTATVAVLPEVEDVEIEIRQEDLRIETYRSSGSGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTGI+ TSSEKSQ +NR +A+K+L+ R++D + + + S RK +G+GDRS Sbjct: 242 VRITHIPTGIVATSSEKSQIKNREKALKLLKTRVFDAKLQEEQAKYSEQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ +++G + +II+ L A Q + + ++ Sbjct: 302 ERIRTYNYPQNRVTDHRIGLTIQKLDQIVEGKLGEIIDALTIAEQTSKLEALND 355 >gi|313631914|gb|EFR99059.1| peptide chain release factor 1 [Listeria seeligeri FSL N1-067] Length = 358 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 240/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y + + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVEAYREYKNVNAQIDETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLSEKLDD-EMREMAKEEFAELQKEKAELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|313622330|gb|EFR92817.1| peptide chain release factor 1 [Listeria innocua FSL J1-023] Length = 358 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 242/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNINEQIDETR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKTELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|167625123|ref|YP_001675417.1| peptide chain release factor 1 [Shewanella halifaxensis HAW-EB4] gi|189039991|sp|B0TR27|RF1_SHEHH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167355145|gb|ABZ77758.1| peptide chain release factor 1 [Shewanella halifaxensis HAW-EB4] Length = 361 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 248/362 (68%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + + L++EY+ + ++ Y Q ++ Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDASIIADQERFRALSKEYSQLEDVVRTFKSYQQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E++++AQ E A ++ I LE E+ LLLPKD +DD +C +EIR Sbjct: 61 DFESAKEMM--EEDDPELKEMAQEEYKATKEAIATLEAELQILLLPKDPNDDNNCFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA ++W++EV+++++ + GG+KE++A ISG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAESKRWQIEVMNTNEGEHGGFKEVIAKISGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VLPE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVIVLPEVPEAEAIEINKADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYN+ QGR+++HRINLTLY+L ++G ID ++ PL+ +QA M+ + Sbjct: 299 LVSSGDRSERIRTYNYPQGRVSEHRINLTLYRLNEFMEGDIDCVVEPLIQENQADMLAAL 358 Query: 356 SE 357 E Sbjct: 359 GE 360 >gi|253574239|ref|ZP_04851581.1| peptide chain release factor 1 [Paenibacillus sp. oral taxon 786 str. D14] gi|251846716|gb|EES74722.1| peptide chain release factor 1 [Paenibacillus sp. oral taxon 786 str. D14] Length = 355 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 155/356 (43%), Positives = 240/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + +L ++E + + P + Y E + Sbjct: 1 MLDRLQSLADRYEKLSELLCDPDVANDSKRLRDYSKEQSDLQPAYEAYTEYKNVIGELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D E+R++ ++E+ + + LE +I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKAMQAEKLDD-EMREMVKMEIEELTARQQALEEKIRILLLPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + W+VEV+ +++D GG+KE++ I+G+G +S++K+ESG Sbjct: 120 GDEAALFAADLYRMYTRYADSQGWRVEVMDMNESDLGGFKEVIFMINGKGAYSKLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+PATE+ GR+HTS +TVAVLPE E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPATESGGRIHTSTSTVAVLPEVEEVDIEILDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+ KSQ+ N+ +A++VLRAR+YD++R+ + + RK ++G+G Sbjct: 240 SAVRVTHIPTGIVATCQDGKSQNSNKEKALQVLRARIYDMKRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q R+TDHRI LTL+KL+ V+ G +++I++ L A QA+++ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTLHKLDQVMNGELEEIVSALTIAEQAELMEKGE 355 >gi|167766740|ref|ZP_02438793.1| hypothetical protein CLOSS21_01246 [Clostridium sp. SS2/1] gi|167711494|gb|EDS22073.1| hypothetical protein CLOSS21_01246 [Clostridium sp. SS2/1] Length = 366 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 247/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L +R + +++ + + L +E ++PI+ K Y +KQ +D Sbjct: 12 DKLEGLVDRLDTVLQELNDPDVAGNQNRFRDLMKEQNELTPIVEKYKEYKAEKQNIEDSL 71 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+++LA+ E+ + + LE E+ LL+PKD DDK+ I+E+RAG GG Sbjct: 72 -MLLEEESDEEMKELAKEELNESKANVERLEEELKILLIPKDPMDDKNIIVEMRAGAGGD 130 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LFV D+ RMY YA ++WKV LS +++ GG+KE+V +SG+G +SR K+ESGVH Sbjct: 131 EAGLFVADVARMYRSYAESKRWKVNTLSFNESGIGGFKELVFMVSGQGAYSRFKYESGVH 190 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVA++PE +++V+I + D + D RASG+GGQ VNTTDSA Sbjct: 191 RVQRIPATESGGRIHTSTITVAIMPEVEDVEVEIDMNDCKFDVFRASGNGGQCVNTTDSA 250 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V EKSQ +N+ +A+KVLR+RLY++E+++ +E +A RK QIG+GDR Sbjct: 251 VRLTHIPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELEQQKAHDEEAAKRKSQIGTGDR 310 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ QGR+TDHRI LTL+KL+ ++ G +D++I+ L A QA + + E Sbjct: 311 SEKIRTYNYPQGRVTDHRIKLTLHKLDSIMNGDLDELIDSLTAADQAAKLSNMEE 365 >gi|227538599|ref|ZP_03968648.1| peptide chain release factor 1 [Sphingobacterium spiritivorum ATCC 33300] gi|227241518|gb|EEI91533.1| peptide chain release factor 1 [Sphingobacterium spiritivorum ATCC 33300] Length = 357 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K R+ E+E +S ++ + KL +EY + I+ + IY Sbjct: 1 MLDKLQAIKERWQEVEAELSNPDTISDMKRFAKLNKEYKDLGKIVDQYHIYKNMVSNIDA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+R++A+ E+ + + E E EI +L+PKD +D K+ I+EIR GTG Sbjct: 61 NKDILA-NEKDQELREMAKEELDILYGQKEEKEEEIRLMLIPKDPEDAKNAIIEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY R+ + W+ EV+ ++ GGYKE++ + G + ++K+ESG Sbjct: 120 GDEAALFAGDLYRMYTRFFETKGWRNEVMDVTEGTSGGYKEVILKVIGDDAYGQLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+VAVLPEA ++DV++ DI + T R+ G+GGQ+VN + Sbjct: 180 VHRVQRVPDTETQGRVHTSAASVAVLPEAEDVDVELNPGDIEMQTSRSGGAGGQNVNKVE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + V++TH P+GI+V E+SQ NR AM++LR +LY++E ++ + +A RK + +G Sbjct: 240 TKVQLTHKPSGIVVVCQVERSQLANRELAMEMLRNKLYELEVQKKHGDTAAKRKTMVSTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS ++RTYN+ QGR+T+HRI LTLY L V+ G I II+ L A A+ + Sbjct: 300 DRSAKVRTYNYPQGRVTEHRIGLTLYNLPAVMDGDIQGIIDALQFAENAEKMKE 353 >gi|302346475|ref|YP_003814773.1| peptide chain release factor 1 [Prevotella melaninogenica ATCC 25845] gi|302150829|gb|ADK97090.1| peptide chain release factor 1 [Prevotella melaninogenica ATCC 25845] Length = 370 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 218/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ R+ E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 9 QKLDGLEARYEEVSTLITDPSVIADQSRYVKLTKEYKDLGDIMDARRRYINCLTTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD+E++++A+ E+ E LE EI LL+PKD +D K+ +EIR G GG Sbjct: 69 DIIA-NESDAEMKEMAREELSENEALQPALEEEIKLLLVPKDPEDAKNVQMEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RY + WK+ + S S+ GG+KEI + G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKRYCDKKGWKLSITSVSEGTAGGFKEIDFAVEGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYVDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I D+I+ L A A+ + Sbjct: 308 TLVSTGDRSAKIRTYNYPQGRVTDHRIGFTTHDLQGFMNGEIQDMIDALTVAENAEKLKE 367 >gi|197120070|ref|YP_002140497.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem] gi|197089430|gb|ACH40701.1| peptide chain release factor 1 [Geobacter bemidjiensis Bem] Length = 359 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 175/359 (48%), Positives = 257/359 (71%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++I +L+ RF E+E +S+ + + KL++E++ ++ +++ Y + + Sbjct: 1 MSMFEKIAELERRFEELESLLSDPEVLGNQTEFRKLSKEHSGLAELVAAYREYKKILSDI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D ++ + D E+R++AQ E+L++E LE EI LLLPKD +DDK+ +LEIRAG Sbjct: 61 DDNKELLKEP--DQEMREMAQAELLSLEARREVLEGEIKLLLLPKDPNDDKNVVLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG E+ALF GDLFRMY R+A +W+VE++S+S+++ GG+KE++A + G GVF+++K+E Sbjct: 119 TGGDESALFAGDLFRMYSRFAETNRWRVEIISASESEKGGFKEVIALVEGTGVFAKLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TEA GR+HTSA TVAV+PEA ++D+DI D++ID R+SG+GGQHVNT Sbjct: 179 SGTHRVQRVPETEAQGRIHTSACTVAVMPEAEDVDIDINPADLKIDVYRSSGAGGQHVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG +V E+SQ +NR +AMKVL++R+ D + +A+RK Q+G Sbjct: 239 TDSAVRITHLPTGTVVACQEERSQIKNRAKAMKVLKSRILDNIVMEQNAKLAADRKSQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF QGR+TDHRI LTLY+L+ ++ G I +I + L +Q + + + SE Sbjct: 299 SGDRSERIRTYNFPQGRMTDHRIGLTLYRLDAIMAGDIAEIADSLRQHYQMEALQAQSE 357 >gi|315283708|ref|ZP_07871812.1| peptide chain release factor 1 [Listeria marthii FSL S4-120] gi|313612648|gb|EFR86686.1| peptide chain release factor 1 [Listeria marthii FSL S4-120] Length = 358 Score = 276 bits (705), Expect = 4e-72, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 242/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVEAYREYKNVNEQINETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE ELE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKTELEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 302 SERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 356 >gi|238755548|ref|ZP_04616886.1| Peptide chain release factor 1 [Yersinia ruckeri ATCC 29473] gi|238706228|gb|EEP98607.1| Peptide chain release factor 1 [Yersinia ruckeri ATCC 29473] Length = 360 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 248/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+E + ++ + D + L+ EYA ++ + + ++ Sbjct: 1 MKSSIVAKLEALQERHEEVEAHLGDATVIADQDRFRALSREYAQLTDVTRCFKEWQSVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ LE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIETAEMML----DDPEMREMAQEELKDARTRSEALEQQLQVLLLPKDPDDERGCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVEV+S+SD + GGYKEI+A +SG GV+ ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEVMSASDGEHGGYKEIIAKVSGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPEIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG++V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGLVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|312869581|ref|ZP_07729732.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3] gi|311094867|gb|EFQ53160.1| peptide chain release factor 1 [Lactobacillus oris PB013-T2-3] Length = 362 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 156/353 (44%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y Q Q +D Sbjct: 8 DKLQAVTDRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D ++ + + E+ + +LE E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 EMLRETN-DPDLAAMTKDELAESKDRQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY YA + WKVEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYLHYAEKQGWKVEVVDKNETEVGGFKEIALMITGNNVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQHVN T SA Sbjct: 187 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ + RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQSAYDEQRKNAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q + + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGELDEIIEALIVADQTEKLEQL 359 >gi|218689158|ref|YP_002397370.1| peptide chain release factor 1 [Escherichia coli ED1a] gi|254790882|sp|B7MTZ5|RF1_ECO81 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|218426722|emb|CAR07559.1| peptide chain release factor RF-1 [Escherichia coli ED1a] Length = 360 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 251/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYCLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|157370232|ref|YP_001478221.1| peptide chain release factor 1 [Serratia proteamaculans 568] gi|166977369|sp|A8GDA3|RF1_SERP5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157321996|gb|ABV41093.1| peptide chain release factor 1 [Serratia proteamaculans 568] Length = 361 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EYA ++ + + + + + Sbjct: 8 KLEALQERHEEVQALLGDAGVIAEQDRFRALSREYAQLTDVSRCFLEWRKVQDDLATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELKDAKAATEELEQQLQVLLLPKDPDDERDCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A +SG GVF ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAETRRWRVEIMSANEGEHGGYKEVIAKVSGDGVFGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+P E + +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPAVPEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +G+GDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMAKRQQAEASTRRNLLGTGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLAALS 357 >gi|332298739|ref|YP_004440661.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168] gi|332181842|gb|AEE17530.1| Peptide chain release factor 1 [Treponema brennaborense DSM 12168] Length = 359 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ +L R+AE+ + + Y ++ E++ +S ++ + Y + Q + Sbjct: 1 MLKKLEELSKRYAELNDMIQDPELVRDPKRYKEIMREHSHLSQVMDSYAEYKEVLQGISE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I + D +++++A+ E+ A+E + E+E+ + LL+P D ++K+ I+EIR G G Sbjct: 61 AQHLITEE-DDHDMKEMAREELKALESRVPEMESALKMLLIPPDPLEEKNIIMEIRGGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLFRMY RYA ++ WK E++ +S+ + GGYKEI +ISG+ V+ +++E G Sbjct: 120 GDEASLFAADLFRMYTRYAEIKNWKYEIMDASETEVGGYKEISFSISGKFVYGSLRWEGG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTSA TVAVLPEA E +++I ED+R+D MRA G GGQ VNTTD Sbjct: 180 VHRVQRVPETEAQGRIHTSAVTVAVLPEAEETEIEIRPEDLRVDVMRAGGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +N+ +AM+VLRARL+D+E + ERSA RK +GSG Sbjct: 240 SAVRLTHLPTGLVVIQQDEKSQIKNKAKAMRVLRARLFDLEESKKQAERSAARKSMVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRINLTLYKL+ +QG +D++++ L + + + SA Sbjct: 300 DRSERIRTYNFPQNRVTDHRINLTLYKLDQFMQGNLDEMLDALNISAKEAALKSA 354 >gi|313885157|ref|ZP_07818909.1| peptide chain release factor 1 [Eremococcus coleocola ACS-139-V-Col8] gi|312619848|gb|EFR31285.1| peptide chain release factor 1 [Eremococcus coleocola ACS-139-V-Col8] Length = 359 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L R+ E+ +S+ + + +LT E A + P + KI Y + + E +D Sbjct: 3 EQLDSLLIRYDEVNELLSDPIVIADSNRLRELTIEEADLRPKVEKIRRYKEVEAEIEDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + D +I +A+ E+ +++ E +L+ +I L+LP+D +D K+ I+EIR GG Sbjct: 63 AMLSEESDD-DILAMAKEELASLKAENEQLQEDIKLLMLPEDPNDGKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL MY +YA + WK EVL ++ GGYKE+ I+G V+S++KFE+G H Sbjct: 122 EAQLFAGDLLNMYTKYADKQGWKTEVLDANITGIGGYKEVTLMITGNKVYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS ATV V+PEA EID ++ DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPQTESQGRVHTSTATVVVMPEAEEIDFELDENDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPT +V E+SQ +NR +AMK+LRAR+YD R + +E + RKL++G+GDR Sbjct: 242 VRLTHIPTNTVVAMQDERSQIKNREKAMKILRARVYDQVRSQAQSEYDSERKLKVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL +L+ VL G +D+II+ L+ Q++ + + Sbjct: 302 SERIRTYNFPQSRVTDHRIGLTLQQLDSVLSGNLDEIIDALVLYDQSQKLEELN 355 >gi|281425822|ref|ZP_06256735.1| peptide chain release factor 1 [Prevotella oris F0302] gi|281400083|gb|EFB30914.1| peptide chain release factor 1 [Prevotella oris F0302] Length = 370 Score = 276 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 144/360 (40%), Positives = 223/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + Y+KLT+E+ + I++ Y ++ Sbjct: 9 EKLDGLESRFEEVSTLITDPDVIADQTRYVKLTKEWKDLGDIMNARKRYIACLDSIREAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SDS+++D+A+ E+ E +LE EI LL+PK+ +D K+ +EIRAGTGG Sbjct: 69 DILA-NESDSDMKDMAREELQQNETLQPQLEEEIKLLLIPKEPEDAKNVQMEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+R+ ++ W + V S+ GGYKEI ISG V+ MK+ESGVH Sbjct: 128 EAALFAGDLFNMYKRFCDMKGWTLSVTDVSEGAVGGYKEIDFAISGTDVYGTMKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GR+ TSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPVTESNGRMQTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L ++D E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTFIHDREHQKYVDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFLGGNIQDMIDALTVAENAEKLKE 367 >gi|15925108|ref|NP_372642.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Mu50] gi|15927692|ref|NP_375225.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus N315] gi|21283771|ref|NP_646859.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MW2] gi|49486911|ref|YP_044132.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MSSA476] gi|57652140|ref|YP_186925.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus COL] gi|87160795|ref|YP_494718.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196022|ref|YP_500835.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148268569|ref|YP_001247512.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus JH9] gi|150394633|ref|YP_001317308.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus JH1] gi|151222234|ref|YP_001333056.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156980433|ref|YP_001442692.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Mu3] gi|161510323|ref|YP_001575982.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141637|ref|ZP_03566130.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315787|ref|ZP_04839000.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253731044|ref|ZP_04865209.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733048|ref|ZP_04867213.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus TCH130] gi|255006906|ref|ZP_05145507.2| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257793876|ref|ZP_05642855.1| peptide chain release factor 1 [Staphylococcus aureus A9781] gi|258407044|ref|ZP_05680194.1| peptide chain release factor 1 [Staphylococcus aureus A9763] gi|258422066|ref|ZP_05684983.1| peptide chain release factor 1 [Staphylococcus aureus A9719] gi|258433565|ref|ZP_05688638.1| peptide chain release factor 1 [Staphylococcus aureus A9299] gi|258440460|ref|ZP_05690630.1| peptide chain release factor 1 [Staphylococcus aureus A8115] gi|258445668|ref|ZP_05693846.1| peptide chain release factor 1 [Staphylococcus aureus A6300] gi|258450122|ref|ZP_05698217.1| peptide chain release factor RF1 [Staphylococcus aureus A6224] gi|258453423|ref|ZP_05701405.1| peptide chain release factor 1 [Staphylococcus aureus A5937] gi|262049285|ref|ZP_06022160.1| peptide chain release factor 1 [Staphylococcus aureus D30] gi|262052620|ref|ZP_06024814.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3] gi|269203754|ref|YP_003283023.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus ED98] gi|282894762|ref|ZP_06302988.1| peptide chain release factor 1 [Staphylococcus aureus A8117] gi|282923106|ref|ZP_06330791.1| peptide chain release factor 1 [Staphylococcus aureus A9765] gi|282929042|ref|ZP_06336627.1| peptide chain release factor 1 [Staphylococcus aureus A10102] gi|284025152|ref|ZP_06379550.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 132] gi|294850088|ref|ZP_06790825.1| peptide chain release factor 1 [Staphylococcus aureus A9754] gi|295407048|ref|ZP_06816850.1| peptide chain release factor 1 [Staphylococcus aureus A8819] gi|296275403|ref|ZP_06857910.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MR1] gi|297210061|ref|ZP_06926454.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246047|ref|ZP_06929904.1| peptide chain release factor 1 [Staphylococcus aureus A8796] gi|300910424|ref|ZP_07127876.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus TCH70] gi|304379299|ref|ZP_07362038.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|54039049|sp|P66019|RF1_STAAN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|54039050|sp|P66020|RF1_STAAW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|54041594|sp|P66018|RF1_STAAM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56749376|sp|Q6G7J2|RF1_STAAS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71153097|sp|Q5HE82|RF1_STAAC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361613|sp|Q2FF10|RF1_STAA3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361614|sp|Q2FWE0|RF1_STAA8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223609|sp|A7X4W4|RF1_STAA1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|172048990|sp|A6QIW2|RF1_STAAE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039994|sp|A6U3K3|RF1_STAA2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039995|sp|A5IUR3|RF1_STAA9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039996|sp|A8YY83|RF1_STAAT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|13701912|dbj|BAB43204.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus N315] gi|14247891|dbj|BAB58280.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Mu50] gi|21205213|dbj|BAB95907.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MW2] gi|49245354|emb|CAG43829.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MSSA476] gi|57286326|gb|AAW38420.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus COL] gi|87126769|gb|ABD21283.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203580|gb|ABD31390.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147741638|gb|ABQ49936.1| bacterial peptide chain release factor 1 (bRF-1) [Staphylococcus aureus subsp. aureus JH9] gi|149947085|gb|ABR53021.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus JH1] gi|150375034|dbj|BAF68294.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus str. Newman] gi|156722568|dbj|BAF78985.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Mu3] gi|160369132|gb|ABX30103.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725232|gb|EES93961.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728956|gb|EES97685.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus TCH130] gi|257787848|gb|EEV26188.1| peptide chain release factor 1 [Staphylococcus aureus A9781] gi|257841377|gb|EEV65821.1| peptide chain release factor 1 [Staphylococcus aureus A9763] gi|257841966|gb|EEV66398.1| peptide chain release factor 1 [Staphylococcus aureus A9719] gi|257849296|gb|EEV73275.1| peptide chain release factor 1 [Staphylococcus aureus A9299] gi|257852529|gb|EEV76447.1| peptide chain release factor 1 [Staphylococcus aureus A8115] gi|257855507|gb|EEV78444.1| peptide chain release factor 1 [Staphylococcus aureus A6300] gi|257856596|gb|EEV79502.1| peptide chain release factor RF1 [Staphylococcus aureus A6224] gi|257864404|gb|EEV87150.1| peptide chain release factor 1 [Staphylococcus aureus A5937] gi|259159490|gb|EEW44540.1| peptide chain release factor 1 [Staphylococcus aureus 930918-3] gi|259162650|gb|EEW47217.1| peptide chain release factor 1 [Staphylococcus aureus D30] gi|262076044|gb|ACY12017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus ED98] gi|269941717|emb|CBI50124.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus TW20] gi|282589348|gb|EFB94440.1| peptide chain release factor 1 [Staphylococcus aureus A10102] gi|282593297|gb|EFB98294.1| peptide chain release factor 1 [Staphylococcus aureus A9765] gi|282762850|gb|EFC02984.1| peptide chain release factor 1 [Staphylococcus aureus A8117] gi|285817782|gb|ADC38269.1| Peptide chain release factor 1 [Staphylococcus aureus 04-02981] gi|294823036|gb|EFG39468.1| peptide chain release factor 1 [Staphylococcus aureus A9754] gi|294968073|gb|EFG44100.1| peptide chain release factor 1 [Staphylococcus aureus A8819] gi|296885261|gb|EFH24201.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177046|gb|EFH36301.1| peptide chain release factor 1 [Staphylococcus aureus A8796] gi|300888266|gb|EFK83457.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus TCH70] gi|302751999|gb|ADL66176.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304342158|gb|EFM08058.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312830470|emb|CBX35312.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315128789|gb|EFT84789.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus CGS03] gi|315196948|gb|EFU27290.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus CGS01] gi|320140710|gb|EFW32562.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MRSA131] gi|320143686|gb|EFW35463.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MRSA177] gi|329314803|gb|AEB89216.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus T0131] gi|329723967|gb|EGG60491.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 21189] gi|329726324|gb|EGG62792.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 21172] gi|329729314|gb|EGG65722.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 21193] Length = 358 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E I+ E+ LE E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 EMLSET-DDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++++II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELN 354 >gi|57239178|ref|YP_180314.1| peptide chain release factor 1 [Ehrlichia ruminantium str. Welgevonden] gi|58579136|ref|YP_197348.1| peptide chain release factor 1 [Ehrlichia ruminantium str. Welgevonden] gi|58617189|ref|YP_196388.1| peptide chain release factor 1 [Ehrlichia ruminantium str. Gardel] gi|75432752|sp|Q5FGZ2|RF1_EHRRG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|81557311|sp|Q5HB80|RF1_EHRRW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|57161257|emb|CAH58178.1| peptide release factor 1 [Ehrlichia ruminantium str. Welgevonden] gi|58416801|emb|CAI27914.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str. Gardel] gi|58417762|emb|CAI26966.1| Peptide chain release factor 1 (RF-1) [Ehrlichia ruminantium str. Welgevonden] Length = 359 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 182/358 (50%), Positives = 263/358 (73%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +L +F +++ + + SV++++ ++EY+ + PIIS I Y+ +++ + Sbjct: 1 MSFDSGLEELSEKFYKLKHLLEDPSQLSVESFVNASKEYSELLPIISVIDEYNAVQKDIK 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL +I + +D+E+++LA+ E ++K++ ++++++ LLPKD DD ++ ILEIRAGT Sbjct: 61 DLQELINNQETDTELKNLAKEEFYELQKQLPKVKHKLKLSLLPKDKDDARNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WK+E ++SS GG+KE+ +SG VF+++KFES Sbjct: 121 GGEEAALFVTDLYRMYIKYAEKKNWKIEQINSSSTGIGGHKEVSLCVSGSNVFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEASGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+V EKSQH+N+ +A+KVLRARLYD+E+++ E S RK QIGS Sbjct: 241 DSAVRITHIPSGIVVIQQDEKSQHKNKNKALKVLRARLYDLEKQKRDAEISQLRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RITDHRINLTLY+LE ++ +G +D++I L+ +A + + + Sbjct: 301 GDRSERIRTYNFPQSRITDHRINLTLYRLEDIMKEGDLDELIEALIAEDEANKLKNLN 358 >gi|325856854|ref|ZP_08172352.1| peptide chain release factor 1 [Prevotella denticola CRIS 18C-A] gi|327314543|ref|YP_004329980.1| peptide chain release factor 1 [Prevotella denticola F0289] gi|325483227|gb|EGC86204.1| peptide chain release factor 1 [Prevotella denticola CRIS 18C-A] gi|326945459|gb|AEA21344.1| peptide chain release factor 1 [Prevotella denticola F0289] Length = 370 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 220/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ R+ E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 9 QKLDGLEARYEEVSTLITDPSVIADQKRYVKLTKEYKDLGDIMDARRRYVNCLTTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD+E++++A+ E+ E+ ++E EI LL+PKD +D K+ +EIR G GG Sbjct: 69 DIIA-NESDAEMKEMAREELSENEELQPKIEEEIKLLLVPKDPEDGKNVQMEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RY + WK+ V S S+ GG+KEI + G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKRYCDKKGWKLSVTSVSEGAVGGFKEIDFAVEGENVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYIDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ + G I ++I+ L A A+ + Sbjct: 308 TLVSTGDRSAKIRTYNFPQGRVTDHRIGFTTHDLQGFMNGDIQEMIDALTVAENAEKLKE 367 >gi|325847800|ref|ZP_08170022.1| peptide chain release factor 1 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480818|gb|EGC83871.1| peptide chain release factor 1 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 357 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 162/357 (45%), Positives = 237/357 (66%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + ++ F E+E ++++ + D + K++ EY + PI+ K + + ++ Sbjct: 1 MLENLEHMRENFKELEKKLADPEVLSDTDKFKKVSREYNQLKPIVEKYNEIRAAEDMIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+ DL + E+ +K + + ++ LL+P+D +D K I+EIRAG G Sbjct: 61 NTELLKEAE-DKEMIDLLKAEIDENKKNLEKYNEDLKILLIPQDPNDHKDVIVEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF G+L+RMY YA + +K E + S GG KE + G G +S++K+ESG Sbjct: 120 GEEAGLFAGNLYRMYHMYADKQNYKTEDIDVSSQGIGGMKEATFIVRGEGAYSKLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E+D+ I DIR D R+SG+GGQ VNTTD Sbjct: 180 VHRVQRVPETESGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V EKSQ +N+ +AM+VLRARLY++E ++ E S NRK Q+G+G Sbjct: 240 SAVRLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRARLYEMEEEKRQKEISDNRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ QGRITDHRIN T+Y+L+ L G I+++I+ L+T Q + + + E Sbjct: 300 DRSERIRTYNYPQGRITDHRINKTIYQLDDFLDGNIEEMIDSLITEDQTRKLKTMGE 356 >gi|259503694|ref|ZP_05746596.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041] gi|259168326|gb|EEW52821.1| peptide chain release factor RF1 [Lactobacillus antri DSM 16041] Length = 362 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y Q Q +D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKQVTQTIKDDE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++ + + E+ ++ +LE E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 EMLRET-DDPDLAAMTKDELAESKERQEQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY YA + WKVEV+ S+ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYLHYAEKQGWKVEVVDKSETEVGGFKEIALMITGTNVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQHVN T SA Sbjct: 187 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ N RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQKEQNAYDKKRKNAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q + + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMSGELDEIIEALIVADQTEKLEQL 359 >gi|126209498|ref|YP_001054723.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae L20] gi|126098290|gb|ABN75118.1| Peptide chain release factor 1 (RF-1) [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 333 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 160/333 (48%), Positives = 240/333 (72%), Gaps = 6/333 (1%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 D + ++EY+ + +++ + + + + ++ ++ D +++D+A E+ Sbjct: 3 NDQDKFRAYSKEYSQLEEVVTTFNRWKKLNNDIEEAQILL----DDPDMKDMAAEEIAEN 58 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + EI LE + LLLPKD +D+ + LEIRAGTGG EA +F GDL+RMY RY ++W+ Sbjct: 59 KAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWR 118 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 +E +S+++++ GGYKEI+ ISG GV+ ++KFESG HRVQRVP TE+ GR+HTSA TVAV Sbjct: 119 IEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAV 178 Query: 207 LPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 +PE E ++ +I D+RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+ Sbjct: 179 MPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHK 238 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ +A+ VL +R+ VE++R A E++ R+ +GSGDRS++IRTYN+ QGR+TDHRINLT Sbjct: 239 NKAKALAVLASRIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLT 298 Query: 325 LYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +Y+L+ V+ G ID++I P++T +QA + + SE Sbjct: 299 VYRLDEVMNGKIDELIQPIITEYQADQLAALSE 331 >gi|242371609|ref|ZP_04817183.1| peptide chain release factor 1 [Staphylococcus epidermidis M23864:W1] gi|242350676|gb|EES42277.1| peptide chain release factor 1 [Staphylococcus epidermidis M23864:W1] Length = 358 Score = 275 bits (704), Expect = 5e-72, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 250/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E +D+ Sbjct: 3 DQLDIVEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRSYKSKKEELEDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E ++ + E A++ E+ ++E E+ LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLRET-SDKEEVEMLKEESTALKNELPDMEEELKILLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVVATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++D+II+ L + Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLDEIIDALTLSEQTEKLKELN 354 >gi|49484342|ref|YP_041566.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|82751719|ref|YP_417460.1| peptide chain release factor 1 [Staphylococcus aureus RF122] gi|257426257|ref|ZP_05602672.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 55/2053] gi|257428915|ref|ZP_05605309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 65-1322] gi|257431524|ref|ZP_05607897.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 68-397] gi|257434233|ref|ZP_05610583.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus E1410] gi|257437146|ref|ZP_05613186.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M876] gi|282904787|ref|ZP_06312661.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C160] gi|282906462|ref|ZP_06314313.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282909431|ref|ZP_06317246.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911683|ref|ZP_06319482.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282914967|ref|ZP_06322747.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M899] gi|282917467|ref|ZP_06325220.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus D139] gi|282920296|ref|ZP_06328020.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C427] gi|282925507|ref|ZP_06333161.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C101] gi|283771286|ref|ZP_06344175.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus H19] gi|283958898|ref|ZP_06376343.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus A017934/97] gi|293509035|ref|ZP_06667822.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 58-424] gi|293510950|ref|ZP_06669649.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M809] gi|293547552|ref|ZP_06672227.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M1015] gi|295428705|ref|ZP_06821331.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297589815|ref|ZP_06948455.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus MN8] gi|56749405|sp|Q6GEV7|RF1_STAAR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361615|sp|Q2YUN5|RF1_STAAB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|49242471|emb|CAG41187.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus MRSA252] gi|82657250|emb|CAI81691.1| peptide chain release factor 1 [Staphylococcus aureus RF122] gi|257270962|gb|EEV03135.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 55/2053] gi|257274257|gb|EEV05774.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 65-1322] gi|257277765|gb|EEV08435.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 68-397] gi|257280872|gb|EEV11017.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus E1410] gi|257283539|gb|EEV13666.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M876] gi|282312908|gb|EFB43309.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C101] gi|282316156|gb|EFB46537.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C427] gi|282318669|gb|EFB49026.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus D139] gi|282321170|gb|EFB51501.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M899] gi|282324448|gb|EFB54761.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus WBG10049] gi|282326701|gb|EFB56999.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282330412|gb|EFB59930.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus Btn1260] gi|282594820|gb|EFB99797.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus C160] gi|283459491|gb|EFC06584.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus H19] gi|283789616|gb|EFC28439.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus A017934/97] gi|290919672|gb|EFD96745.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M1015] gi|291094739|gb|EFE25011.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus 58-424] gi|291466235|gb|EFF08762.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus M809] gi|295127375|gb|EFG57015.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus EMRSA16] gi|297576943|gb|EFH95657.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus MN8] gi|298695392|gb|ADI98614.1| Peptide chain release factor 1 [Staphylococcus aureus subsp. aureus ED133] gi|302333764|gb|ADL23957.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus JKD6159] gi|312437464|gb|ADQ76535.1| peptide chain release factor RF1 [Staphylococcus aureus subsp. aureus TCH60] gi|315193283|gb|EFU23681.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus CGS00] gi|323439333|gb|EGA97057.1| peptide chain release factor 1 [Staphylococcus aureus O11] gi|323442458|gb|EGB00087.1| peptide chain release factor 1 [Staphylococcus aureus O46] Length = 358 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E I+ E+ LE E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 EMLSET-DDKEEVEMLKEESSGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++++II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELN 354 >gi|197301354|ref|ZP_03166435.1| hypothetical protein RUMLAC_00081 [Ruminococcus lactaris ATCC 29176] gi|197299511|gb|EDY34030.1| hypothetical protein RUMLAC_00081 [Ruminococcus lactaris ATCC 29176] Length = 356 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 248/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL R+ E+ + E + + +L +E + ++PI+ Y KQ ++ Sbjct: 3 DRLDDLLIRYEEVMGELQEPDVANDPERFRRLMKEQSDLAPIVEAYKEYKNCKQNIEE-S 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+R+LA+ E+ I ELE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 62 LQLLEEESDEEMRELAKEELSGSRARIEELEQELKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY YA R+WK E++S ++N GG+KE V ++G+G +SRMK+ESGVH Sbjct: 122 EAALFAAEIYRMYVHYADSRRWKTEMISLNENGIGGFKECVFMVTGQGAYSRMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS TVAV+PEA E+DV I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTITVAVMPEAEEVDVVIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ +A R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDLELEKQQASEAAERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ +L G +D+II+ L+ A Q + E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLHKLDSILNGDLDEIIDSLIAADQTAKLAKMEE 356 >gi|81428746|ref|YP_395746.1| peptide chain release factor 1 [Lactobacillus sakei subsp. sakei 23K] gi|119361554|sp|Q38WJ4|RF1_LACSS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78610388|emb|CAI55438.1| Peptide chain release factor 1 [Lactobacillus sakei subsp. sakei 23K] Length = 365 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 243/355 (68%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L +R+AE++ MS+ ++ Y++L++E A + I+ K + + E + Sbjct: 6 EQLDGLLDRYAELQELMSDPEVINETSRYMELSKEEAGLREIVGKYTRLKEVLSEVTENE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +DSE+ +L + ++ ++ E +LE EI L+LP D +D+K+ I+EIR GG Sbjct: 66 ELLRET-TDSEMTELVKADLEELQTEKAQLEQEIKILMLPTDPNDEKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL MY+RYA + W+ E++ + + GG+KE+ I+G+ V+S++K+E+G H Sbjct: 125 EASLFAGDLLNMYQRYAESQNWQTEIIDETATEVGGFKEVAMMITGKNVYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GRVHTS ATVAV+PE +DV++ +DIR+D RASG+GGQH+N T SA Sbjct: 185 RVQRIPKTESQGRVHTSTATVAVMPEYDGVDVELEAKDIRVDVYRASGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V ++SQ QNR++AMK+L+AR+YD + +E ++RK +GSGDR Sbjct: 245 VRMTHIPTGIVVAMQDQRSQQQNRVKAMKILQARVYDYYESQNQSEYDSSRKSAVGSGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G + D+I+ L+ Q + + + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELGDVIDALILFDQTEKLEQLQD 359 >gi|257126615|ref|YP_003164729.1| peptide chain release factor 1 [Leptotrichia buccalis C-1013-b] gi|257050554|gb|ACV39738.1| peptide chain release factor 1 [Leptotrichia buccalis C-1013-b] Length = 360 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 244/355 (68%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ D+ + E+ + + V K+ + +I ++ K + Y +K+E + L Sbjct: 3 QKLDDVVLKHKELTELLMDPEVVSDPKKIMEYNKALNSIDEVVQKYTYYKNRKEEMESLK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D+E++++ E+ +IE+EI LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 EDLK-TEKDAEMKEMMLEEIHSIEEEIPNLEEELKILLLPKDPNDDKNVIMEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D+FRM+ RYA +WK E++ S+ GG KE+ I G G +SR+KFESGVH Sbjct: 122 EAALFAADIFRMFTRYAERNRWKTEIIDKSEIGVGGLKEVTFLIKGHGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATE+SGRVHTS TVAVLPE + +V+I D++IDT R+SG+GGQHVNTTDS Sbjct: 182 RVQRVPATESSGRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V + +SQ +NR AMKVL ++LY++E ++ + + R+ Q+GSGD Sbjct: 242 AVRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQRSAVESERRSQVGSGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSE+IRTYNF QGR+TDHRI LTL++LE VL G +D++I+ L+ QA+++ Sbjct: 302 RSEKIRTYNFPQGRVTDHRIKLTLHRLEGVLDGDLDEMIDALIAYEQAELLKEVG 356 >gi|167993219|ref|ZP_02574314.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205328702|gb|EDZ15466.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] Length = 360 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKCQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|326798862|ref|YP_004316681.1| peptide chain release factor 1 [Sphingobacterium sp. 21] gi|326549626|gb|ADZ78011.1| Peptide chain release factor 1 [Sphingobacterium sp. 21] Length = 357 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 232/356 (65%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K R+ E+E +S +V+ + KL +EY + I+ + IY + Sbjct: 1 MLEKLEAIKLRWEEVERELSNPDTVNDMKRFAKLNKEYKDLGKIVDEYYIYKNIISNIET 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+R++A+ ++ A+ + E E ++ +++PKD +D K+ I EIR GTG Sbjct: 61 NKDILA-NEKDQELREMAKEDLDALLVQKEEKEEKVRLMMIPKDPEDAKNAIFEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY RY + W+VEV+ ++ GGYKE++ +SG V+ ++K+ESG Sbjct: 120 GDEAALFAGDLYRMYTRYFDQKGWRVEVMDVTEGTAGGYKEVILKVSGEDVYGQLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+VAVLPEA E+DV+I DI + T R+ G+GGQ+VN + Sbjct: 180 VHRVQRVPDTETQGRVHTSAASVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNVNKVE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + V++TH P+GI+V E+SQ NR AM++LR +LY++E ++ + +A RK + +G Sbjct: 240 TKVQLTHKPSGIVVVCQVERSQLANRELAMEMLRTKLYELEVQKKHGDIAAKRKTMVSTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+T+HRI LT+Y L ++ G I +II+ L A A+ + Sbjct: 300 DRSAKIRTYNYPQGRVTEHRIGLTMYNLPAIMDGDIQEIIDALQFAENAEKMKEGG 355 >gi|304311492|ref|YP_003811090.1| peptide chain release factor 1 [gamma proteobacterium HdN1] gi|301797225|emb|CBL45445.1| peptide chain release factor 1 [gamma proteobacterium HdN1] Length = 362 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ + R E+ +SE + + KL++EYA + P+++ + Y + Sbjct: 1 MKDSLRRKLESIAERHEEVAALLSEGSVISDQNQFRKLSQEYAELEPVVTCFADYRKVLA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D SD E+R++ E+ + + + E ++ L+LPKD +D ++ LEIR Sbjct: 61 DITLARQLMED--SDPEMREMGAEELRTGQAQRDQFELDLQKLMLPKDPNDGRNVYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA W+VEV+S + + GGYKEI++ +SG V+S++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAESCGWRVEVISEHEGEHGGYKEIISRVSGDSVYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TEA GR+HTSA TVAVLPEA EI D+DI ED+++DT R++G+GGQH Sbjct: 179 FESGAHRVQRVPVTEAQGRIHTSACTVAVLPEADEIGDIDIRPEDLKMDTYRSTGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+TH+PTG +V E+SQH+NR +A+ +LRARL + + S R+ Sbjct: 239 VNTTDSAVRLTHLPTGTVVECQEERSQHKNRAKALALLRARLLSNAQDAQTRQTSEARRQ 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLY+L +++G + +++ L+ +QA + + Sbjct: 299 LVGSGDRSERIRTYNFPQGRLTDHRINLTLYRLNEIVEGDLSEVVQSLMNEYQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|299140684|ref|ZP_07033822.1| peptide chain release factor 1 [Prevotella oris C735] gi|298577650|gb|EFI49518.1| peptide chain release factor 1 [Prevotella oris C735] Length = 370 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 145/360 (40%), Positives = 222/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + Y+KLT+E+ + I++ Y ++ Sbjct: 9 EKLDGLESRFEEVSTLITDPDVIADQTRYVKLTKEWKDLGDIMNARKRYIACLDSIREAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SDS+++D+A+ E+ E +LE EI LL+PKD +D K+ +EIRAGTGG Sbjct: 69 DILA-NESDSDMKDMAREELQQNETLQPQLEEEIKLLLIPKDPEDAKNVQMEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+R+ ++ W + V S+ GGYKEI ISG V+ MK+ESGVH Sbjct: 128 EAALFAGDLFNMYKRFCDMKGWTLSVTDVSEGAVGGYKEIDFAISGTDVYGTMKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GR+ TSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPVTESNGRMQTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L ++D E ++ ++ + RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTFIHDREHQKYVDDIANRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFLGGNIQDMIDALTVAENAEKLKE 367 >gi|168237830|ref|ZP_02662888.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197289243|gb|EDY28610.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 360 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL A ++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGACIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|160893851|ref|ZP_02074634.1| hypothetical protein CLOL250_01405 [Clostridium sp. L2-50] gi|156864503|gb|EDO57934.1| hypothetical protein CLOL250_01405 [Clostridium sp. L2-50] Length = 358 Score = 275 bits (704), Expect = 6e-72, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 255/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL +R + ++++ V + + KL +E + ++PI+ K Y KQ +D Sbjct: 3 DKLEDLVDRLDTLNNQLTDPDIVSDQNKFRKLMKEQSELTPIVEKYKEYKDAKQTIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + +D E+R++A+ E+ + + + ENE+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 L-MLEEENDEELREMAKEELNEAKATVEKTENELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY++Y KWKVE++S ++N GG+KE V I+G G +S+MK+ESGVH Sbjct: 122 EAALFAYEIYRMYQKYVDQFKWKVELMSVNENGIGGFKEAVFMITGDGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS TVAV+PEA E+DV+I DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRIPKTESGGRIHTSTVTVAVMPEAEEVDVEINENDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR++LYD+E ++ + +A+RK QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQHDAEAADRKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF +GR+TDHRI LTLYKLE +L G +++II+ L+ A QA + +E Sbjct: 302 SEKIRTYNFPEGRVTDHRIKLTLYKLEQILNGDLNEIIDSLIAADQAAKLSQVNE 356 >gi|258453172|ref|ZP_05701163.1| peptide chain release factor 1 [Staphylococcus aureus A5948] gi|257859118|gb|EEV81975.1| peptide chain release factor 1 [Staphylococcus aureus A5948] Length = 358 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKGKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E I+ E+ LE E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 EMLSET-DDKEEVEMLKEESNGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++++II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELN 354 >gi|225874213|ref|YP_002755672.1| peptide chain release factor 1 [Acidobacterium capsulatum ATCC 51196] gi|254790854|sp|C1F2J1|RF1_ACIC5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225791643|gb|ACO31733.1| peptide chain release factor 1 [Acidobacterium capsulatum ATCC 51196] Length = 358 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 245/355 (69%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ E+ M++ + K + ++ + ++ K Y + + D Sbjct: 3 ERLEQIETRYEELGREMADPALIADQQKYQKTAKQHRELEDVVEKFREYREVQNGIADAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+EIR +A+ E+ ++E+ + ++E ++ LLLPKD +D+K+ ++EIRAGTGG Sbjct: 63 GMMNEA--DAEIRAMAEEELASLEERLPQIEADLKLLLLPKDPNDEKNVVVEIRAGTGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF ++FRMY RYA R+WKVEVLS S++ GG KE++A I G V+S+MK+ESGVH Sbjct: 121 EASLFAAEVFRMYARYAEQRRWKVEVLSMSESSVGGAKEVIAIIEGDHVYSQMKYESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSA TVAVLPEA E+DV I +D+RIDT +SG GGQ VNTT SA Sbjct: 181 RVQRVPATETQGRVHTSAITVAVLPEAEEVDVKIEAKDLRIDTFCSSGPGGQSVNTTYSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PT +V EKSQ +NR +AM+VLR+RLY+VE +R + RK Q+GSGDR Sbjct: 241 VRITHLPTNTVVSCQDEKSQIKNREKAMRVLRSRLYEVEMERQQQALAKERKQQVGSGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q R+TDHRI LT+++L V++G + +I+ L A+ + + SE Sbjct: 301 SEKIRTYNFPQNRLTDHRIGLTIHQLAEVMEGRLQPVIDALTAHFNAERLKAESE 355 >gi|327253901|gb|EGE65530.1| peptide chain release factor 1 [Escherichia coli STEC_7v] Length = 360 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 252/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + E+ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGEAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 358 >gi|315649892|ref|ZP_07902974.1| peptide chain release factor 1 [Paenibacillus vortex V453] gi|315274691|gb|EFU38073.1| peptide chain release factor 1 [Paenibacillus vortex V453] Length = 355 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + KL ++E + + P Y +E + Sbjct: 1 MLDRLQSLADRYEKLSELLCDPDVANDSKKLRDYSKEQSDLQPAYEAYVEYKNVIEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T+ G+ D E+R++ ++E+ + REL +I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKTMQGEKMDD-EMREMVKMEIEELSTRERELAEKIRILLLPKDPNDDKNVIIEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WKVE++ + ND GG+KE++ I+GRG +S+MKFESG Sbjct: 120 GDEAALFASDLYRMYTRYADTQGWKVELMDVNTNDLGGFKEVIFMINGRGAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TVAV+PEA E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPTTESGGRIHTSTSTVAVMPEAEEVDIEIHDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+ KSQ+ N+ +A++VLRAR++D+ R+ + + RK ++G+G Sbjct: 240 SAVRVTHIPTGIVATCQDGKSQNSNKDKALQVLRARIFDMMRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF Q R+TDHRI LT++KL+ V+ G I++I++ L A QA+++ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTVHKLDQVMNGEIEEIVSALTIAEQAELME 352 >gi|303237122|ref|ZP_07323692.1| peptide chain release factor 1 [Prevotella disiens FB035-09AN] gi|302482509|gb|EFL45534.1| peptide chain release factor 1 [Prevotella disiens FB035-09AN] Length = 370 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 140/360 (38%), Positives = 220/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ RF E+ +++ + KLT+EY + I+ Y + + Sbjct: 9 EKLDGLEARFLEVSTLITDPDVISDQQRYVKLTKEYKDLGDIMDARKRYIKCLTTISEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A++E+ E+ + LE EI LL+PKD +DDK+ +EIRAG GG Sbjct: 69 DILT-NETDQEMKEMARLELSENEELLPNLEEEIKLLLVPKDPEDDKNVQMEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GD+F MY+RY + W + + S S+ GG+KEI ++G GV+ +K+ESGVH Sbjct: 128 EAALFAGDIFNMYKRYCDKKGWNLSITSVSEGTVGGFKEIDFAVAGTGVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+T+ GR+ TSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPSTDTQGRMQTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ N+ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYVNDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L + G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNYPQGRVTDHRIGFTTHDLPGFMNGDIQDMIDALTVAENAEKLKE 367 >gi|52842546|ref|YP_096345.1| peptide chain release factor 1 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295177|ref|YP_127592.1| peptide chain release factor 1 [Legionella pneumophila str. Lens] gi|54298226|ref|YP_124595.1| peptide chain release factor 1 [Legionella pneumophila str. Paris] gi|61214584|sp|Q5WUB1|RF1_LEGPL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61214585|sp|Q5X2V3|RF1_LEGPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61214588|sp|Q5ZT29|RF1_LEGPH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52629657|gb|AAU28398.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53752011|emb|CAH13437.1| peptide chain release factor 1 [Legionella pneumophila str. Paris] gi|53755009|emb|CAH16497.1| peptide chain release factor 1 [Legionella pneumophila str. Lens] gi|307611181|emb|CBX00825.1| peptide chain release factor 1 [Legionella pneumophila 130b] Length = 362 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 249/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + R+ E+ +SE+ + + L++EYA + P+ Y + K Sbjct: 1 MKKSLELKLQQMLERYEEVGRLLSEASIIADQNQFKSLSKEYAQLEPVSQCYESYLEAKN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L+ ++ + D ++ +A+ E+ ++K+I EL+ ++ + L+PKD DD+++ LE+R Sbjct: 61 NLDSLNELL--ESDDKDLATMAEEEIDTVKKQIEELDEQLQWHLIPKDPDDERNIYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W++E++S+S + GGYKEI+A ISG+ V+S++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAESQGWQIELISASHGEHGGYKEIIAKISGQAVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++PE E D+ I +D+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAIMPEVDEINDIQINPDDLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V E+SQH+NR +AM +L+ RL D E + E++ RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRLLDAEVSKQKQEQAQTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYNF QGR+TDHRINLT+Y+L +++G + +I+PL + A+++ Sbjct: 299 LVGTGDRSERIRTYNFPQGRLTDHRINLTIYQLSDIMEGNLSLVIDPLKREYHAELLADL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|85711946|ref|ZP_01043000.1| Protein chain release factor A [Idiomarina baltica OS145] gi|85694132|gb|EAQ32076.1| Protein chain release factor A [Idiomarina baltica OS145] Length = 362 Score = 275 bits (703), Expect = 6e-72, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 254/362 (70%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R+ E++ + E + D + L++EYA + ++S + Y Q + Sbjct: 1 MNPSIERKLEGLIERYEEVQALLGEPDIISEQDKFRSLSKEYAQLEEVVSAFNSYRQAQS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + H + D D E+R++A E+ ++ + LEN + LLLPKD +DD++C LEIR Sbjct: 61 DLTAAHEMADD--DDPEMREMANEEIADAKQRVESLENSLQVLLLPKDPNDDRACYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA W+V +S+++ + GGYKE++A +SG GV+ RMK Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEQHGWRVSTVSANEGEHGGYKEVIAQLSGDGVYGRMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E + ++I D+R+DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVAVLPEIPEAEAIEINPADLRVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITH+P+G++V E+SQH+NR +AM VL++RL +E ++ A E ++ R+ Sbjct: 239 VNRTDSAIRITHLPSGVVVECQEERSQHKNRAKAMSVLQSRLQRMEDEKRAQEEASTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ Q R+TDHRINLTLY+L+ VL+G +D +++P++T HQA + + Sbjct: 299 LVGSGDRSERIRTYNYPQSRVTDHRINLTLYRLDEVLEGGLDLLLDPIITEHQADQLAAL 358 Query: 356 SE 357 S+ Sbjct: 359 SQ 360 >gi|223043916|ref|ZP_03613957.1| peptide chain release factor 1 [Staphylococcus capitis SK14] gi|222442631|gb|EEE48735.1| peptide chain release factor 1 [Staphylococcus capitis SK14] Length = 358 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 168/353 (47%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E +D+ Sbjct: 3 DQLDIVEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E D+ + E +++ E+ E+E E+ LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLKET-SDKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G +D+II+ L + Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGNLDEIIDALTLSEQTEKLKELN 354 >gi|323490903|ref|ZP_08096098.1| peptide chain release factor 1 [Planococcus donghaensis MPA1U2] gi|323395383|gb|EGA88234.1| peptide chain release factor 1 [Planococcus donghaensis MPA1U2] Length = 359 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ + +S+ V KL ++E + + + Y + + Sbjct: 3 DRLQSVEDRYDRLNELLSDPDIVSDTNKLRDYSKEQSDLQETVETYREYKDLTTQLTEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D D+++R++ + EV +E+++ +E ++ LL+PKD +DDK+ I+EIR GG Sbjct: 63 AMF-DEKMDADMREMVKEEVNELEQQVSVVEERLHKLLIPKDPNDDKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY R+A WK++V+ S+ GG+KEIV I+G+G +S+MK+E+G H Sbjct: 122 EAALFAGDLYRMYTRFAESNGWKIQVMDSNPTGLGGFKEIVFMITGKGAYSKMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA LPE E++VDI DIR DT +SG+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVACLPEVEEVEVDIHENDIRTDTYASSGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PT +V EKSQ +N+ AMKVLRAR+Y+ ++ E A RK +G+GDR Sbjct: 242 VRLTHLPTNTVVTCQDEKSQIKNKASAMKVLRARVYEKFQQEAQAEYDAVRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG +D+I++ L+ Q+ + S + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKMDEIVDALIVEEQSARMESLN 355 >gi|223938118|ref|ZP_03630015.1| peptide chain release factor 1 [bacterium Ellin514] gi|223893162|gb|EEF59626.1| peptide chain release factor 1 [bacterium Ellin514] Length = 359 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 165/359 (45%), Positives = 244/359 (67%), Gaps = 6/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M H I RF+E+E +S+ + + + +L++EY+ + +++ S Y + Sbjct: 1 MDLRPH--IDKFARRFSEVEASLSDPKAFENAQRFQELSKEYSRLKGLVAGGSAYLKAVA 58 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ T++ +DSE+ +A+ EV +E+ +++L E+ +LP D D ++ I+EIR Sbjct: 59 DLEENKTLLAAEPADSEMALMAKEEVTRLEEVVKKLGLEVQAGVLPPDPTDSRNTIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GGSE+ALF DL+RMY RYA + WKVE + +S +D GG+KE++ I+G V+ R+K Sbjct: 119 AGAGGSESALFAADLYRMYTRYAESQGWKVESIDASPSDLGGFKEVIFGITGSDVYKRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVPATEA GR+HTS TVAVLPEA E+D+DI ED+ +D RASG GGQ V Sbjct: 179 YESGVHRVQRVPATEAQGRIHTSTCTVAVLPEAEEVDIDIRPEDLSVDRCRASGKGGQGV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIP+G++V + E+SQH+N+ +AM VLR+RL + + + +A RK Q Sbjct: 239 NTTDSAVRLHHIPSGLIVYCADERSQHKNKAKAMTVLRSRLLEKKIADENAKYAAQRKEQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+G+R+ERIRTYNF Q R+TDHRI +TLY L ++G ID II PL+T + + + Sbjct: 299 VGTGERNERIRTYNFPQNRVTDHRIEVTLYNLPTFVEGEIDSIIEPLMTNDLNEKLAAL 357 >gi|317121004|ref|YP_004101007.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter marianensis DSM 12885] gi|315590984|gb|ADU50280.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter marianensis DSM 12885] Length = 381 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 166/345 (48%), Positives = 234/345 (67%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF ++E +++ + L +E A + P++ + + + + ++ + Sbjct: 36 RFDQLERELADPAVAADPRRWQPLAQERAELEPLVDAYRRWREAGADLEAARALLRET-D 94 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D++ EV +E E + LE + LLLP+D D + I+EIRAGTGG EAALF GD Sbjct: 95 DADEHAYLTAEVERLEAERQRLERTLRSLLLPRDPRDQRDVIMEIRAGTGGEEAALFAGD 154 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY+RYA + W+ EV++++++D GG+KE+V +SGRG FSR+K ESGVHRVQRVP T Sbjct: 155 LFRMYQRYAERQGWRTEVMAATESDLGGFKEVVFAVSGRGAFSRLKHESGVHRVQRVPVT 214 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 EA+GR+HTS ATVAVLPEA E++V I +D+ IDT ASG GGQHVN T+SAVRITH PT Sbjct: 215 EAAGRIHTSTATVAVLPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAVRITHKPT 274 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI+V E+SQH+NR RAMK+LRARL D +R E S R+ Q+G+G+RSE+IRTYN Sbjct: 275 GIVVTCQDERSQHKNRARAMKILRARLLDYYTRRQQEELSQQRRSQVGTGERSEKIRTYN 334 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 F + R+TDHRI LTLY+L+ ++ G +D++++ L + +G A Sbjct: 335 FRENRVTDHRIGLTLYRLQEIMDGDLDELLDALAAHDEQVRLGEA 379 >gi|165977491|ref|YP_001653084.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165877592|gb|ABY70640.1| peptide chain release factor 1 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 333 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 159/333 (47%), Positives = 240/333 (72%), Gaps = 6/333 (1%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 D + ++EY+ + +++ + + + + ++ ++ D +++++A E+ Sbjct: 3 NDQDKFRAYSKEYSQLEEVVTTFNRWKKLNSDIEEAQILL----DDPDMKEMAAEEIAEN 58 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + EI LE + LLLPKD +D+ + LEIRAGTGG EA +F GDL+RMY RY ++W+ Sbjct: 59 KAEIENLEQHLQILLLPKDPNDEYNAFLEIRAGTGGDEAGIFAGDLYRMYSRYCESKRWR 118 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 +E +S+++++ GGYKEI+ ISG GV+ ++KFESG HRVQRVP TE+ GR+HTSA TVAV Sbjct: 119 IEEMSANESEQGGYKEIIVKISGEGVYGQLKFESGGHRVQRVPKTESQGRIHTSACTVAV 178 Query: 207 LPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 +PE E ++ +I D+RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+ Sbjct: 179 MPELPESEMPEINPTDLRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVECQDERSQHK 238 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ +A+ VL +R+ VE++R A E++ R+ +GSGDRS++IRTYN+ QGR+TDHRINLT Sbjct: 239 NKAKALAVLASRIVQVEQERQAAEQADTRRNLLGSGDRSDKIRTYNYPQGRVTDHRINLT 298 Query: 325 LYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +Y+L+ V+ G ID++I P++T +QA + + SE Sbjct: 299 VYRLDEVMNGKIDELIQPIITEYQADQLAALSE 331 >gi|160891026|ref|ZP_02072029.1| hypothetical protein BACUNI_03473 [Bacteroides uniformis ATCC 8492] gi|270294364|ref|ZP_06200566.1| peptide chain release factor 1 [Bacteroides sp. D20] gi|317480970|ref|ZP_07940050.1| peptide chain release factor 1 [Bacteroides sp. 4_1_36] gi|156859247|gb|EDO52678.1| hypothetical protein BACUNI_03473 [Bacteroides uniformis ATCC 8492] gi|270275831|gb|EFA21691.1| peptide chain release factor 1 [Bacteroides sp. D20] gi|316902863|gb|EFV24737.1| peptide chain release factor 1 [Bacteroides sp. 4_1_36] Length = 370 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQVLGGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D E+R++A+ E+ A + ELE +I LL+P D D ++ ILEIR GTGG Sbjct: 69 EIIA-NETDQEMREMAREELDACQTRQPELEEQIKLLLVPADPQDGRNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + W++E+ S+++ GG+KEIV +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCESKGWRMEISSANEGAAGGFKEIVCSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGIVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|24379522|ref|NP_721477.1| peptide chain release factor 1 [Streptococcus mutans UA159] gi|32171546|sp|Q8DU64|RF1_STRMU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|24377463|gb|AAN58783.1|AE014946_8 putative peptide chain release factor 1 [Streptococcus mutans UA159] Length = 359 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 157/358 (43%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANSRETVAVYREYKQVVQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ +LLLPKD +DDK+ ILEIR Sbjct: 61 ADAQEMIKDASGDPELEEMAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + WK EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLNMYQKYAENQGWKFEVMEASANGVGGLKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRIIHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELN 358 >gi|260592403|ref|ZP_05857861.1| peptide chain release factor 1 [Prevotella veroralis F0319] gi|260535639|gb|EEX18256.1| peptide chain release factor 1 [Prevotella veroralis F0319] Length = 370 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 219/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ R+ E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 9 QKLDGLEARYEEVSTLITDPSVIADQSRYVKLTKEYKDLGDIMDARKRYITCLTTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + SD+E++++A+ E+ E+ LE EI LL+PKD +D K+ +EIR G GG Sbjct: 69 DIIA-NESDAEMKEMAREELAENEELQPRLEEEIKILLVPKDPEDAKNVQMEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RY + WK+ + S S+ GG+KEI + G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKRYCDKKGWKLSITSVSEGAVGGFKEIDFAVEGENVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYIDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ + G I ++I+ L A A+ + Sbjct: 308 TLVSTGDRSAKIRTYNFPQGRVTDHRIGFTTHDLQGFMNGEIQEMIDALTVAENAEKLKE 367 >gi|220963008|gb|ACL94364.1| bacterial peptide chain Release factor 1 (RF-1) [Caulobacter crescentus NA1000] Length = 335 Score = 275 bits (703), Expect = 7e-72, Method: Composition-based stats. Identities = 189/336 (56%), Positives = 254/336 (75%), Gaps = 5/336 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + +KL++E+A + P+ + + E +L + SD E+ ++ + E Sbjct: 1 MGAATDGAEIVKLSKEHAELRPVAEAVERLAKLSAERAELDVMA----SDPEMAEMVRDE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A+++++ +E E+ +L PKD D++ S ILE+RAGTGG EAALF GDLFRMY+RYA Sbjct: 57 IQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGGDEAALFAGDLFRMYQRYAQT 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + W+VE+ S S+ + GG+KEIVA+I+G GVF R+KFESGVHRVQRVPATEA GR+HTSAA Sbjct: 117 QGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGVHRVQRVPATEAQGRIHTSAA 176 Query: 203 TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQ 262 TVAVLPEA +++++I D+RIDT R+SG+GGQHVN TDSAVRITH+PTG++VTSSEKSQ Sbjct: 177 TVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDSAVRITHLPTGVVVTSSEKSQ 236 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 HQNR RAMK L+ARLYD++R+ + + RS RK Q+GSGDRSERIRTYNF QGR+TDHRIN Sbjct: 237 HQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDRSERIRTYNFPQGRVTDHRIN 296 Query: 323 LTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 LTLY L +++G +DD+INPL+ QA+ + S E Sbjct: 297 LTLYNLARIMEGDALDDVINPLIAEDQAERLASLEE 332 >gi|325679581|ref|ZP_08159156.1| peptide chain release factor 1 [Ruminococcus albus 8] gi|324108611|gb|EGC02852.1| peptide chain release factor 1 [Ruminococcus albus 8] Length = 359 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 250/356 (70%), Gaps = 5/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L+++F EI R+ + V+ Y +L EY + PI+ K+ YD+ K E + Sbjct: 3 DKLRALEDKFNEINERLMQPEVVNDSKLYTELMIEYRDLQPIVEKLKEYDKAKAEFDEAV 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D +++++ Q + + + +LE+++ LLLPKD +DD++ I+EIR G GG Sbjct: 63 EMMNDGGLDKDMKEMVQEQYDESKTAMAQLEDDLKILLLPKDPNDDRNVIIEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L+RMY YAA + W+++V+S+++ + GGYKEI T+SG+G +SR+K+ESGVH Sbjct: 123 EAALFANSLYRMYTMYAAQKGWQIDVMSANETELGGYKEITFTVSGQGAYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE+ GRVHTS TVAVLPEA E+++D DI+++ R+SG+GGQH+N T S Sbjct: 183 RVQRVPETESQGRVHTSTVTVAVLPEAEEVELDLNEERDIKMEVFRSSGAGGQHINKTSS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ HIPTG +V +E+SQ QNR +A+K+LRA+L D + + NE ++NR+ Q+G+GD Sbjct: 243 AVRLIHIPTGTVVECQNERSQFQNRDKALKMLRAKLLDEKVRAQENEIASNRRSQVGTGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYNF + RI+DHRI LTLYKLE +L G +D++I+ L TA QA + + E Sbjct: 303 RSEKIRTYNFPESRISDHRIKLTLYKLEQILNGNLDEVIDALATADQAAKLAAQQE 358 >gi|148359876|ref|YP_001251083.1| peptide chain release factor 1 [Legionella pneumophila str. Corby] gi|296107926|ref|YP_003619627.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy] gi|166223567|sp|A5IED7|RF1_LEGPC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148281649|gb|ABQ55737.1| peptide chain release factor 1 (RF-1) [Legionella pneumophila str. Corby] gi|295649828|gb|ADG25675.1| peptide chain release factor [Legionella pneumophila 2300/99 Alcoy] Length = 362 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 249/361 (68%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + R+ E+ +SE+ + + L++EYA + P+ Y + K Sbjct: 1 MKKSLELKLQQMLERYEEVGRLLSEASIIADQNQFKSLSKEYAQLEPVSQCYESYLEAKN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L+ ++ + D ++ +A+ E+ ++K+I EL+ ++ + L+PKD DD+++ LE+R Sbjct: 61 NLDSLNELL--ESDDKDLATMAEEEIDIVKKQIEELDEQLQWHLIPKDPDDERNIYLEVR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + W++E++S+S + GGYKEI+A ISG+ V+S++K Sbjct: 119 AGTGGDEAAIFAGDLFRMYSRYAESQGWQIELISASHGEHGGYKEIIAKISGQAVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++PE E D+ I +D+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAIMPEVDEINDIQINPDDLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V E+SQH+NR +AM +L+ RL D E + E++ RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDERSQHKNRAKAMSLLKTRLLDAEVSKQKQEQAQTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYNF QGR+TDHRINLT+Y+L +++G + +I+PL + A+++ Sbjct: 299 LVGTGDRSERIRTYNFPQGRLTDHRINLTIYQLSDIMEGNLSLVIDPLKREYHAELLADL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|220932633|ref|YP_002509541.1| peptide chain release factor 1 [Halothermothrix orenii H 168] gi|219993943|gb|ACL70546.1| peptide chain release factor 1 [Halothermothrix orenii H 168] Length = 358 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 177/359 (49%), Positives = 249/359 (69%), Gaps = 6/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M L+ K++ L +R+ E+ +S+ ++ Y KL +E+ + I+SK Y + Sbjct: 1 MFDLT-KKLDKLVDRYNELNKEISDPDVINNSEQYQKLLKEHGKLKEIVSKYREYKKVLS 59 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ H+ I + + E+R+LA++E+ + ++E+E+ Y+LLP+D +D+K+ I+EIR Sbjct: 60 RVEEAHS-IIEEEEEQEVRELAEMELKELTPRKEKMEDELTYMLLPEDPNDEKNVIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA LF DL+RMY RYA + WK EV+S++ + GGYKEI+ T+ G+ V+SR+K Sbjct: 119 AGAGGDEAGLFAADLYRMYSRYAESKNWKTEVISANASGIGGYKEIIFTVEGKNVYSRLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVP TE+ GR+HTS ATVAVLPEA E+DVDI D+RID R+SG GGQ V Sbjct: 179 YESGVHRVQRVPTTESGGRIHTSTATVAVLPEAEEVDVDIDPNDLRIDVYRSSGPGGQSV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH PTG++V EKSQH+N+ RAM++LRARL ++ K E RK Q Sbjct: 239 NTTDSAVRITHEPTGLVVSCQDEKSQHKNKARAMRILRARLKELMEKEKQAEIDEARKSQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRSE+IRTYNF QGR++DHRINLT+++L +L G +D II+ L+ K + Sbjct: 299 IGSGDRSEKIRTYNFPQGRVSDHRINLTIHQLNDILDGNLDLIIDNLIKEDTIKRLEKL 357 >gi|242241525|ref|ZP_04795970.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144] gi|242235068|gb|EES37379.1| peptide chain release factor 1 [Staphylococcus epidermidis W23144] gi|319399600|gb|EFV87855.1| peptide chain release factor 1 [Staphylococcus epidermidis FRI909] Length = 358 Score = 275 bits (703), Expect = 8e-72, Method: Composition-based stats. Identities = 168/353 (47%), Positives = 250/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E QD+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDADKLRKYSKEQADLQKTVDVYRSYKTKKEELQDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E ++ + E A++ E+ ++E E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 DMLSET-SDKEEVEMLKEESSALKTELPDMEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKE+ ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEANGFKTEIVEASESDHGGYKEVSFSVSGTGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++D+I+ L + Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLNQIMEGHLDEIVEALTLSEQTEKLKELN 354 >gi|283471335|emb|CAQ50546.1| peptide chain release factor 1 [Staphylococcus aureus subsp. aureus ST398] Length = 358 Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 167/352 (47%), Positives = 246/352 (69%), Gaps = 4/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 4 QLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIEE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E ++ + E I+ E+ LE E+ LL+PKD +DDK I+EIRA GG E Sbjct: 64 MLSET-DDKEEVEMLKEESSGIKAELPNLEEELKILLIPKDPNDDKDVIVEIRAAAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDL RMY +YA + +K E++ +S++D GGYKEI ++SG G +S++KFE+G HR Sbjct: 123 AAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSAV Sbjct: 183 VQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSAV 242 Query: 245 RITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 RITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRSE Sbjct: 243 RITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRSE 302 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RIRTYN+ Q R+TDHRI LTL KL +++G++++II+ L + Q + + Sbjct: 303 RIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELN 354 >gi|127513840|ref|YP_001095037.1| peptide chain release factor 1 [Shewanella loihica PV-4] gi|166223603|sp|A3QH30|RF1_SHELP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|126639135|gb|ABO24778.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella loihica PV-4] Length = 361 Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 246/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + + L++EY+ + ++ Y Q ++ Sbjct: 1 MKDSVIRKLEGLLERNEEVLALLSDAEIIADQERFRALSKEYSQLEDVVKSFKAYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + D++++++AQ E+ + + LE E+ LLLPKD DD + LEIR Sbjct: 61 DLASAQEMLAE--DDADLKEMAQEEIKEAKATLDVLEGELQILLLPKDPKDDNNAFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RY +W++E++++++ + GG+KEI+ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYCEANRWQMEIMNANEGEHGGFKEIIVKVSGDGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV V+PE E + ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVVVMPEIPEAEAIEINPADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIP+GI+V ++SQH+NR +AM VL AR+ VE ++ +E + R+ Sbjct: 239 VNKTDSAIRITHIPSGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSEEESTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ +QA ++ + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLSEVMEGDLDAILGPLMQENQADLLAAL 358 Query: 356 SE 357 SE Sbjct: 359 SE 360 >gi|83310717|ref|YP_420981.1| protein chain release factor A [Magnetospirillum magneticum AMB-1] gi|119361556|sp|Q2W6V3|RF1_MAGMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|82945558|dbj|BAE50422.1| Protein chain release factor A [Magnetospirillum magneticum AMB-1] Length = 354 Score = 275 bits (702), Expect = 8e-72, Method: Composition-based stats. Identities = 174/358 (48%), Positives = 249/358 (69%), Gaps = 8/358 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY--IKLTEEYAAISPIISKISIYDQKKQEEQ 60 Q + R E+ ++S +D+ +L++E + + P+++ + + + +++ Sbjct: 1 MNLETQFDKVLYRHDEVRAQLSSGEGMDSQTIQRLSKELSELDPVVTAVQAFRKAREDMV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ +D +++DLA+ E A+++ + LE E+ +LLPKD D+K+ I+E+RAGT Sbjct: 61 QAAEMM----NDPDMKDLAEEEFYALKERLPALEREVQIMLLPKDEADEKNAIIEVRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LFRMYERYA L W+ EV+ +D GG KE ATI+GR VF+R+KFES Sbjct: 117 GGEEAALFAAELFRMYERYAGLHGWRFEVMDVNDTGIGGVKEASATITGRNVFARLKFES 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GR+HTSAATVA++PEA E+D+ + D+R D R+ GSGGQ VNTT Sbjct: 177 GVHRVQRVPATESQGRIHTSAATVAIMPEAEEVDIQLNDSDLRFDVYRSQGSGGQSVNTT 236 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTG+ + EKSQH+N+ A+K+LRARLY+ ER ER+A RK Q+GS Sbjct: 237 DSAVRVTHIPTGLAVACQQEKSQHKNKATALKLLRARLYERERSAKDAERAAARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRIN+TLYK++ V+ G +D+++ L+ A QA+ + Sbjct: 297 GDRSERIRTYNFPQGRVTDHRINMTLYKIDAVMSGDALDELVEALVAADQAERLAEME 354 >gi|86134218|ref|ZP_01052800.1| peptide chain release factor 1 [Polaribacter sp. MED152] gi|85821081|gb|EAQ42228.1| peptide chain release factor 1 [Polaribacter sp. MED152] Length = 358 Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 156/357 (43%), Positives = 228/357 (63%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K R+ E+ + + + Y +L +EY + ++ K Y ++ Sbjct: 1 MVDKLRIVKQRYDEVSDLIIQPEIIMDQKRYAQLMKEYKDLGDVVKKGDEYQTLMNNIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A++++ I ELE EI +LL+PKD +D K+ ++E+RAGTG Sbjct: 61 AKEIIAD-GSDAEMTEMAKMQMEEANTRIPELEEEIKFLLIPKDPEDAKNAVVELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y + WKV + S+ +GG+KEI ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCESKGWKVSTVDYSEGTNGGFKEIQFEVNGDDVYGILKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAAT V PEA E DV+I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATCMVFPEAEEFDVEINPKDVRIDFFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++ +KSQH+N+ +A KVLR+RLYD+E + E + R + SG Sbjct: 240 SAVRLTHIPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDMELAKKQAEDALKRGSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++QGR+TDHRI L+LY L ++ G I II+ L+ A + + + Sbjct: 300 DRSAKIRTYNYAQGRVTDHRIGLSLYDLPNIMNGDIQKIIDELMLAENTEKLKELGD 356 >gi|15606216|ref|NP_213594.1| peptide chain release factor RF-1 [Aquifex aeolicus VF5] gi|6225940|sp|O67032|RF1_AQUAE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|2983407|gb|AAC06991.1| peptide chain release factor RF-1 [Aquifex aeolicus VF5] Length = 362 Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 170/350 (48%), Positives = 247/350 (70%), Gaps = 6/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ +++ +S+ + Y KL++E + I Y + ++E ++ Sbjct: 9 RLDKLQEKYRKLQEELSKPEVIQDVEKYKKLSKELKELQEINELYERYKKAQKELKEAKE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +SD ++R+LA+ EV + +E+++LE E+ L+PKD +D K+ ILEIRAG GG E Sbjct: 69 LLK--SSDKDLRELAEEEVNRLTEEMKKLEEELKVHLVPKDPNDTKNVILEIRAGAGGEE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY++YA + WKV +LSS+ GGYKE++A I G G +SR+K+ESGVHR Sbjct: 127 AALFAADLFRMYQKYAEEKGWKVSILSSNKTGLGGYKEVIALIEGEGAYSRLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS ATVAVLPE E D+ I E+++I+T RASG+GGQ+VNTT++AV Sbjct: 187 VQRVPVTESSGRIHTSTATVAVLPEVDETDIKIKPEELKIETFRASGAGGQYVNTTETAV 246 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QN+ +A+K+L A+L D ++ E + RK Q+G+G+RS Sbjct: 247 RITHIPTGIVVQCQDERSQFQNKQKALKILYAKLKDYYERKKQEEIAKERKEQVGTGERS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 E+IRTYNF Q R+TDHRINLTLYKL+ VL+G +D+II+ L K + Sbjct: 307 EKIRTYNFPQNRVTDHRINLTLYKLQDVLEGKLDEIIDALRAKEIEKKLE 356 >gi|261409698|ref|YP_003245939.1| peptide chain release factor 1 [Paenibacillus sp. Y412MC10] gi|261286161|gb|ACX68132.1| peptide chain release factor 1 [Paenibacillus sp. Y412MC10] Length = 355 Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + KL ++E + + P Y +E + Sbjct: 1 MLDRLQSLADRYEKLSELLCDPDVANDSKKLRDYSKEQSDLQPAYEAYVEYKNVIEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T+ G+ D E+R++ ++E+ + + +EL I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKTMQGEKMDD-EMREMVKMEIEELTQREQELAERIRILLLPKDPNDDKNVIIEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WKVE++ + ND GG+KE++ I+GRG +S+MKFESG Sbjct: 120 GDEAALFASDLYRMYTRYADTQGWKVELMDVNTNDLGGFKEVIFMINGRGAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TVAV+PEA E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPTTESGGRIHTSTSTVAVMPEAEEVDIEIHDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+ KSQ+ N+ +A++VLRAR++D+ R+ + + RK ++G+G Sbjct: 240 SAVRVTHIPTGIVATCQDGKSQNSNKEKALQVLRARIFDMMRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF Q R+TDHRI LT++KL+ V+ G I++I++ L A QA+ + Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTVHKLDQVMNGEIEEIVSALTLAEQAEAME 352 >gi|67459154|ref|YP_246778.1| peptide chain release factor 1 [Rickettsia felis URRWXCal2] gi|75536414|sp|Q4ULG0|RF1_RICFE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|67004687|gb|AAY61613.1| Peptide chain release factor RF-1 [Rickettsia felis URRWXCal2] Length = 355 Score = 275 bits (702), Expect = 9e-72, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 250/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MSFSDNLAKILDKYENLGKKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLSE 354 >gi|292488088|ref|YP_003530965.1| peptide chain release factor 1 [Erwinia amylovora CFBP1430] gi|292899299|ref|YP_003538668.1| peptide chain release factor 1 (RF-1) [Erwinia amylovora ATCC 49946] gi|291199147|emb|CBJ46261.1| peptide chain release factor 1 (RF-1) [Erwinia amylovora ATCC 49946] gi|291553512|emb|CBA20557.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora CFBP1430] gi|312172219|emb|CBX80476.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora ATCC BAA-2158] Length = 360 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + + L+ EYA ++ + + Q +++ Sbjct: 8 KLEALQERHEEVEAMLGDAGVIADQERFRALSREYAQLTDVSQCFRQWQQCQEDIAAAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++G D+E+R++AQ E+ A +LE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 MLG----DAEMREMAQDELQAARATCEDLEQQLQVLLLPKDPDDERNCYLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S+++ + GGYKE++A + G G + R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWKVEVMSANEGEHGGYKEVIAKVIGEGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPELPEAELPDINPSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E R E S+ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALGVLGSRIRAAEMARRQQEESSTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + + Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEAMEGKLDALIEPIVQEYQADQLAALA 357 >gi|289550267|ref|YP_003471171.1| Peptide chain release factor 1 [Staphylococcus lugdunensis HKU09-01] gi|315660273|ref|ZP_07913128.1| peptide chain release factor RF1 [Staphylococcus lugdunensis M23590] gi|289179799|gb|ADC87044.1| Peptide chain release factor 1 [Staphylococcus lugdunensis HKU09-01] gi|315494700|gb|EFU83040.1| peptide chain release factor RF1 [Staphylococcus lugdunensis M23590] Length = 358 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 163/353 (46%), Positives = 245/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLDIVEERYEQLNEMLSDPDVVNNADKLRKYSKEQAELQKTVDVYREYKNKKEELSDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E ++ + LE ++ +LL+PKD +DDK I+EIRA GG Sbjct: 63 DMLSET-DDKEEIEMLKEESSNLKDALPLLEEKLKFLLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA ++ EV+ ++++D GGYKE+ +SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYTKYAEANGFRTEVVEATESDHGGYKEVSFQVSGAGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTG++ TSSEKSQ QNR +A+KVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGVIATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ER+RTYN+ Q R+TDHRI LTL KL+ +++G +D+II+ L + Q + + + Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLSEQTEKLKELN 354 >gi|157145532|ref|YP_001452851.1| peptide chain release factor 1 [Citrobacter koseri ATCC BAA-895] gi|166223546|sp|A8AG02|RF1_CITK8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157082737|gb|ABV12415.1| hypothetical protein CKO_01275 [Citrobacter koseri ATCC BAA-895] Length = 360 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKGEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEHQADQLAALSE 358 >gi|116625721|ref|YP_827877.1| peptide chain release factor 1 [Candidatus Solibacter usitatus Ellin6076] gi|122252101|sp|Q01RX8|RF1_SOLUE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116228883|gb|ABJ87592.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Solibacter usitatus Ellin6076] Length = 362 Score = 275 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 166/359 (46%), Positives = 248/359 (69%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 +++ L+ RF E+ +M++ + Y K+ + + +S I +K + + + Sbjct: 1 MQFAQKLDQLEKRFDELTQQMADPAVISDADQYRKVAKAQSELSDIAAKYREWKKVEDGL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ + D+E++++A++E+ +E E +E E+ LLLPKD +DDK+ +LEIRAG Sbjct: 61 AQARPMLQEQ--DAELKEMAELEIAQLEPEKLRIEEELRVLLLPKDPNDDKNVVLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA LF ++FRMY RYA + WK+EV SSS++ GG KE++A +SG V++++K+E Sbjct: 119 TGGDEATLFAAEIFRMYSRYAETQNWKMEVTSSSESSVGGLKEVIALVSGNKVYAKLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE GRVHTSA TVAVLPEA E++V + +DIRIDT +SG GGQ VNT Sbjct: 179 SGVHRVQRVPVTEQQGRVHTSAITVAVLPEADEVEVKLEAKDIRIDTFCSSGPGGQSVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVRITH+PTG++V EKSQ +NR +A +VLR+RLY++E ++ A R+ +G Sbjct: 239 TYSAVRITHLPTGLVVSCQDEKSQIKNRAKAERVLRSRLYELELEKQQAALGAERRTMVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSE+IRTYNF Q R++DHRI LTL++L++V++G +D I++ L +QA+ + +E Sbjct: 299 SGDRSEKIRTYNFPQNRVSDHRIGLTLHQLDFVMEGKMDAIVDALTEFYQAQKLKQQAE 357 >gi|206580278|ref|YP_002237908.1| peptide chain release factor 1 [Klebsiella pneumoniae 342] gi|288934821|ref|YP_003438880.1| peptide chain release factor 1 [Klebsiella variicola At-22] gi|290508964|ref|ZP_06548335.1| peptide chain release factor 1 [Klebsiella sp. 1_1_55] gi|238058716|sp|B5XW51|RF1_KLEP3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|206569336|gb|ACI11112.1| peptide chain release factor 1 [Klebsiella pneumoniae 342] gi|288889530|gb|ADC57848.1| peptide chain release factor 1 [Klebsiella variicola At-22] gi|289778358|gb|EFD86355.1| peptide chain release factor 1 [Klebsiella sp. 1_1_55] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 169/362 (46%), Positives = 252/362 (69%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + ++ ++ D + L+ EYA +S + + + Q ++ Sbjct: 1 MKSSIVAKLEALYERHEEVQALLGDAATIADQDKFRALSREYAQLSDVARCYTDWRQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ +E+R Sbjct: 61 DIETAQMML----DDPEMREMAQEELRDAKEKGDQLEQQLQVLLLPKDPDDERNAFVEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA R+W+VE+LS+++ + GG+KE++A SG GV+ R+K Sbjct: 117 AGTGGDEAALFAGDLFRMYSRYAESRRWQVEILSANEGEHGGFKEVIAKFSGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+PE E ++ DI D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAEMPDINPADLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + ++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEYQADQLAAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|307565625|ref|ZP_07628103.1| peptide chain release factor 1 [Prevotella amnii CRIS 21A-A] gi|307345657|gb|EFN91016.1| peptide chain release factor 1 [Prevotella amnii CRIS 21A-A] Length = 370 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 140/360 (38%), Positives = 219/360 (60%), Gaps = 13/360 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ RF E+ +++ ++ Y+KLT EY + I+ Y ++ Sbjct: 10 KLDGLEARFEEVSTLITDPNVINDQARYVKLTREYKDLGDIMEARKRYIACLTTIKEAKD 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + N D +++++A+ E+ E +LE EI LL+PKD++D K+ +E+RAGTGG E Sbjct: 70 ILANEN-DPDMKEMAREELSDNEILQPKLEEEIKLLLVPKDSEDAKNVQMEVRAGTGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GD+F MY+R+ + W + V ++ GG+KEI ISG GV+ +K+ESGVHR Sbjct: 129 AALFAGDIFNMYKRFCDKKGWTLSVTDINEGAVGGFKEIDFAISGEGVYGILKYESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP+T+ GR+ TSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S V Sbjct: 189 VQRVPSTDTQGRMQTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESGV 248 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + ++ + + Q +N+ RA+ LR +YD E ++ N+ + RK Sbjct: 249 RLRYPWKNPNTGEIEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYINDIANRRKS 308 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYN+ QGR+TDHRI T + L + G I ++I+ L A A+ + A Sbjct: 309 LVSTGDRSAKIRTYNYPQGRVTDHRIGFTSHDLPGFMNGNIQEMIDALTVAENAEKMKEA 368 >gi|123442667|ref|YP_001006644.1| peptide chain release factor 1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332161451|ref|YP_004298028.1| peptide chain release factor 1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|166223618|sp|A1JRU0|RF1_YERE8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|122089628|emb|CAL12478.1| peptide chain release factor 1 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318605428|emb|CBY26926.1| peptide chain release factor 1 [Yersinia enterocolitica subsp. palearctica Y11] gi|325665681|gb|ADZ42325.1| peptide chain release factor 1 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAHLGDANVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDPEMREMAQDELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQQAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|153002121|ref|YP_001367802.1| peptide chain release factor 1 [Shewanella baltica OS185] gi|166223602|sp|A6WSF0|RF1_SHEB8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151366739|gb|ABS09739.1| peptide chain release factor 1 [Shewanella baltica OS185] Length = 363 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EYA + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVMALLGDASVISDQDRFRALSKEYAQLEDVVAGFKAYQQAQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + ++ LE+E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAKLEHLEDELQILLLPKDPDDDKNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++S ++ + GG+KE++ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQIEIMSCNEGEHGGFKEVIMKVSGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA + + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILLPLMQEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|256545370|ref|ZP_05472733.1| peptide chain release factor 1 [Anaerococcus vaginalis ATCC 51170] gi|256398931|gb|EEU12545.1| peptide chain release factor 1 [Anaerococcus vaginalis ATCC 51170] Length = 357 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 162/357 (45%), Positives = 234/357 (65%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + ++ F E+E ++++ + + K++ EY + PI+ K + + + Sbjct: 1 MLENLEHMRENFKELEKKLADPEVLSDTERFKKVSREYNQLKPIVEKYNQIRSAEDMINE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+ DL + E+ +K + + ++ LL+P D +D K I+EIRAG G Sbjct: 61 NTELLKEA-DDKEMIDLLKSEIDENKKNLEKYNEDLKVLLIPTDPNDHKDVIVEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF G+L+RMY YA +K+K E + S GG KE + G G +S++K+ESG Sbjct: 120 GEEAGLFAGNLYRMYHMYADKQKYKTEDIDVSSQGIGGMKEATFIVRGEGAYSKLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E+D+ I DIR D R+SG+GGQ VNTTD Sbjct: 180 VHRVQRVPETESGGRIHTSTATVAVLPEADEVDIKIDPNDIRTDVYRSSGNGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V EKSQ +N+ +AM+VLRARLY++E ++ E S NRK Q+G+G Sbjct: 240 SAVRLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRARLYEIEEQKRQKEISDNRKSQVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYN+ QGRITDHRIN T+Y+L+ L G I+++I L+T Q + + + E Sbjct: 300 DRSERIRTYNYPQGRITDHRINKTIYQLDDFLDGNIEEMIESLITEDQTRKLKTMGE 356 >gi|258422882|ref|ZP_05685782.1| peptide chain release factor 1 [Staphylococcus aureus A9635] gi|257846906|gb|EEV70920.1| peptide chain release factor 1 [Staphylococcus aureus A9635] Length = 358 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 166/353 (47%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLDIVEERYEQLNELLSDPDVVNDSDKLRKYSKEQADLQKTVDVYRNYKAKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E I+ E+ +E E+ LL+PKD +DDK I+EIRA GG Sbjct: 63 EMLSET-DDKEEVEMLKEESSGIKAELPNIEEELKILLIPKDPNDDKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAESQGFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKVQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G++++II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLGQIMEGHLEEIIDALTLSEQTDKLKELN 354 >gi|16760669|ref|NP_456286.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765117|ref|NP_460732.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141572|ref|NP_804914.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62180340|ref|YP_216757.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613728|ref|YP_001587693.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168241358|ref|ZP_02666290.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168259999|ref|ZP_02681972.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168462748|ref|ZP_02696679.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820514|ref|ZP_02832514.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443280|ref|YP_002041026.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194448370|ref|YP_002045819.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471193|ref|ZP_03077177.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197250213|ref|YP_002146253.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198242115|ref|YP_002215369.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389390|ref|ZP_03216001.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207856717|ref|YP_002243368.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051786|ref|ZP_03344664.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426495|ref|ZP_03359245.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213617488|ref|ZP_03372314.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648795|ref|ZP_03378848.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238913676|ref|ZP_04657513.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289827376|ref|ZP_06545996.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|61230201|sp|P0A287|RF1_SALTY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|61230203|sp|P0A288|RF1_SALTI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|75482992|sp|Q57NN5|RF1_SALCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039989|sp|A9MW04|RF1_SALPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690045|sp|B5F4H6|RF1_SALA4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690378|sp|B5FU19|RF1_SALDC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690453|sp|B5R3J9|RF1_SALEP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690683|sp|B4TKA4|RF1_SALHS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238693511|sp|B4SUG2|RF1_SALNS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|25299687|pir||AB0720 peptide chain release factor 1 (RF-1) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|154104|gb|AAA88611.1| release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16420306|gb|AAL20691.1| peptide chain release factor RF-1 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16502965|emb|CAD02131.1| peptide chain release factor 1 (RF-1) [Salmonella enterica subsp. enterica serovar Typhi] gi|29137199|gb|AAO68763.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62127973|gb|AAX65676.1| peptide chain release factor RF-1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161363092|gb|ABX66860.1| hypothetical protein SPAB_01453 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194401943|gb|ACF62165.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194406674|gb|ACF66893.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194457557|gb|EDX46396.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633960|gb|EDX52312.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213916|gb|ACH51313.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197936631|gb|ACH73964.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199601835|gb|EDZ00381.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205339285|gb|EDZ26049.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205342722|gb|EDZ29486.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351018|gb|EDZ37649.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206708520|emb|CAR32841.1| Peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261246962|emb|CBG24779.1| RF-1 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993724|gb|ACY88609.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158300|emb|CBW17799.1| peptide chain release factor 1 (RF-1) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912765|dbj|BAJ36739.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320085723|emb|CBY95501.1| Peptide chain release factor 1 RF-1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224404|gb|EFX49467.1| Peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322714814|gb|EFZ06385.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130046|gb|ADX17476.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623115|gb|EGE29460.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988663|gb|AEF07646.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|329929018|ref|ZP_08282820.1| peptide chain release factor 1 [Paenibacillus sp. HGF5] gi|328937007|gb|EGG33436.1| peptide chain release factor 1 [Paenibacillus sp. HGF5] Length = 355 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 161/353 (45%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + KL ++E + + P Y +E + Sbjct: 1 MLDRLQSLADRYEKLSELLCDPDVANDSKKLRDYSKEQSDLQPAYEAYVEYKNVIEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T+ G+ D E+R++ ++E+ + + +EL I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKTMQGEKMDD-EMREMVKMEIEELTQREQELAERIRILLLPKDPNDDKNVIIEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WKVE++ + ND GG+KE++ I+GRG +S+MKFESG Sbjct: 120 GDEAALFASDLYRMYTRYADTQGWKVELMDVNTNDLGGFKEVIFMINGRGAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TVAV+PEA E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPTTESGGRIHTSTSTVAVMPEAEEVDIEIHDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+ KSQ+ N+ +A++VLRAR++D+ R+ + + RK ++G+G Sbjct: 240 SAVRVTHIPTGIVATCQDGKSQNSNKEKALQVLRARIFDMMRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF Q R+TDHRI LT++KL+ V+ G I++I++ L A QA+M+ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTVHKLDQVMNGEIEEIVSALTLAEQAEMME 352 >gi|167745421|ref|ZP_02417548.1| hypothetical protein ANACAC_00112 [Anaerostipes caccae DSM 14662] gi|167655142|gb|EDR99271.1| hypothetical protein ANACAC_00112 [Anaerostipes caccae DSM 14662] Length = 357 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 248/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L R + ++++ + + L +E + ++PI+ K Y Q+KQ ++ Sbjct: 3 DKLESLVERMDTVLQQLNDPDVAGDQNRFRDLMKEQSDLAPIVEKYKEYVQEKQNIEESL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+++LA+ E+ + + LE E+ LL+PKD +DDK+ I+EIRAG GG Sbjct: 63 E-LLEEESDEEMKELAKEELSESKANVERLEEELKILLIPKDPNDDKNIIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D+ RMY YA R+WKVE LS +++ GG+KE+V ISG+G +SR K+ESGVH Sbjct: 122 EAALFAADVARMYRSYAEGRRWKVETLSFNESGIGGFKELVFMISGQGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVA++PE +++V++ L D + D RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSTITVAIMPEVEDVEVEVDLNDCKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V EKSQ +N+ +A+KVLR+RLY++E+++ + + RK Q+G+GDR Sbjct: 242 VRLTHLPTGIVVSCQDEKSQLKNKDKALKVLRSRLYELEQQKAHDAEAEKRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ QGR+TDHRI LTL+KL+ V+ G +D++I+ L A QA + + E Sbjct: 302 SEKIRTYNYPQGRVTDHRIKLTLHKLDSVMNGDLDELIDSLTAADQAAKLSNMEE 356 >gi|204927641|ref|ZP_03218842.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322983|gb|EDZ08179.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTNWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|116494651|ref|YP_806385.1| peptide chain release factor 1 [Lactobacillus casei ATCC 334] gi|191638150|ref|YP_001987316.1| peptide chain release factor 1 [Lactobacillus casei BL23] gi|227535366|ref|ZP_03965415.1| peptide chain release factor RF1 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631748|ref|ZP_04674779.1| peptide chain release factor 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301066209|ref|YP_003788232.1| protein chain release factor A [Lactobacillus casei str. Zhang] gi|122263928|sp|Q03A29|RF1_LACC3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238693030|sp|B3WDK7|RF1_LACCB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116104801|gb|ABJ69943.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus casei ATCC 334] gi|190712452|emb|CAQ66458.1| Peptide chain release factor 1 (RF-1) [Lactobacillus casei BL23] gi|227186962|gb|EEI67029.1| peptide chain release factor RF1 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239526213|gb|EEQ65214.1| peptide chain release factor 1 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438616|gb|ADK18382.1| Protein chain release factor A [Lactobacillus casei str. Zhang] gi|327382180|gb|AEA53656.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus casei LC2W] gi|327385377|gb|AEA56851.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus casei BD-II] Length = 359 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 158/354 (44%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L +R+ E++ MS+ + Y+ L++E + +++ Y Q + ++ Sbjct: 6 EQLDGLLDRYEELQELMSDPEVISDTKRYLALSKEEGGMRDVVAAYKKYKQVLSDIKESE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + D ++ LA+ ++ ++K+ +LE++I L+LPKD +DDK+ I+EIR GG Sbjct: 66 EVLRESKDD-DMEALAKEDLEDLQKQKADLEDQIKVLMLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL MY YA + WK E++ ++ + GGYKE+V I+G V+S++K+E+G H Sbjct: 125 EASLFAGDLLNMYMHYAERQGWKTEIIDATPTEVGGYKEVVVMITGDNVYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE E+D+ I +DIR D R+SG+GGQHVN T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEYDEVDLKIDPKDIRTDVYRSSGAGGQHVNKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIP+GI+V+ E+SQ +NR RAM++LR+R+YD + + NRK IG+GDR Sbjct: 245 VRMTHIPSGIVVSMQDERSQQENRARAMQILRSRVYDYYETQNQEKYDQNRKNAIGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ QA+ + S + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIIDALIVHDQAQKMESLN 358 >gi|160935042|ref|ZP_02082428.1| hypothetical protein CLOLEP_03918 [Clostridium leptum DSM 753] gi|156866495|gb|EDO59867.1| hypothetical protein CLOLEP_03918 [Clostridium leptum DSM 753] Length = 358 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 246/355 (69%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + ++ E ++ + V Y L +E + P++ K Y ++K E++ Sbjct: 3 DRLEVFEKKYEECNQKLYDPAVVSDPEAYAALMKEVKGLEPVVEKYKEYKKQKNNEEEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + + R++ ++E+ + + ++ E+ LLLPKD +DD++ I+EIR G GG Sbjct: 63 QLLAEGGLEKDFREMVELELEEARESLEKISEELKILLLPKDPNDDRNVIVEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF LFRMY YA ++WK E+L++++ + GGYKEI I+G G +SRMK+ESGVH Sbjct: 123 EAALFSASLFRMYSMYAETKRWKTEILNANETELGGYKEISFMITGEGAYSRMKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS TVAVLPEA +++V+I D++IDT R+ G+GGQH+N TDSA Sbjct: 183 RVQRVPETETQGRIHTSTVTVAVLPEAEDVEVEINPSDLKIDTFRSGGAGGQHINKTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTG++V E+SQ++N+ +AMKVL++RL + ER++ NE + RK Q+G+GDR Sbjct: 243 IRITHLPTGLVVECQDERSQYKNKDKAMKVLKSRLLEAEREKQQNEVAQERKSQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLY+LE V+ G +D++I+ L+TA +A + S E Sbjct: 303 SERIRTYNFPQGRLTDHRIGLTLYRLEDVMNGNLDEVIDALITADRAAKLESTIE 357 >gi|24375323|ref|NP_719366.1| peptide chain release factor 1 [Shewanella oneidensis MR-1] gi|32171552|sp|Q8EAR3|RF1_SHEON RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|24350136|gb|AAN56810.1|AE015816_7 peptide chain release factor 1 [Shewanella oneidensis MR-1] Length = 363 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EY+ + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVLALLGDASVIADQDRFRALSKEYSQLEEVVAGFKAYQQAQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+R++AQ E+ A + E+ LE E+ LLLPKD +DD + +EIR Sbjct: 61 DLESAKEML--EEDDAEMREMAQEEIKAAKVELERLEAELQILLLPKDPNDDTNAFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++SS++ + GG+KEI+ +SG G + ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV V+ E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA ++ + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILGPLMQEHQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|332885310|gb|EGK05561.1| peptide chain release factor 1 [Dysgonomonas mossii DSM 22836] Length = 361 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 158/354 (44%), Positives = 235/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KL +EY + I Y Q ++ Sbjct: 8 ERLDALNIRFEEIGKLITDPAVIADMKRYVKLNKEYRDLEKIDIARREYKQLLATIEEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ DSE+R++A+ E+ A + + +LE EI +LL+P D D K+ I+EIR GTGG Sbjct: 68 GIL-ENEDDSELREIAKEEMDAANERMPKLEEEIKFLLVPADPQDSKNAIMEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL+RMY++Y ++ WK E+ S ++ GG+KEI+ T++G GV+ +K+ESGVH Sbjct: 127 EAAIFAGDLYRMYQKYCEIKGWKTEITSVTEGTSGGFKEIIFTVTGEGVYGILKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E+DVDI DI + T R+SG+GGQ+VN ++ Sbjct: 187 RVQRVPATETQGRVHTSAATVAVLPEAEEVDVDINPADIEMQTARSSGAGGQNVNKVETK 246 Query: 244 VRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V++TH P+G ++V +SQ NR AM++LR +LYD+E + + ++ RK + +GDR Sbjct: 247 VQLTHKPSGLVVVCQQSRSQLANRELAMQMLRTKLYDIELSKYMDAIASKRKTMVSTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S +IRTYN+ QGR+TDHRINLT+Y L V+ G I II+ L+ A + + + Sbjct: 307 SAKIRTYNYPQGRMTDHRINLTMYNLSAVMDGEIQPIIDQLIIAENTERLKESE 360 >gi|294010049|ref|YP_003543509.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S] gi|292673379|dbj|BAI94897.1| peptide chain release factor RF-1 [Sphingobium japonicum UT26S] Length = 363 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 179/357 (50%), Positives = 259/357 (72%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +S ++I ++ R E++ M+ + + +++L++EYA I P+ + +QE L Sbjct: 3 ISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVAKAAHEVRRLRQELSAL 62 Query: 63 HTVI--GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + D +SD +R++AQ E+ I+ + + E + LLPKD D + +LEIRAGT Sbjct: 63 EYMAGGEDADSDPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRAGT 122 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY+RYA + WK+E++S++ ++ GGYKE+VA+++G GVF+++KFES Sbjct: 123 GGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGTGVFAKLKFES 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPE E+DV I D++ID RASG+GGQHVNTT Sbjct: 183 GVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTT 242 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+GI+VT + +SQH+N+ +AM+VLRAR+Y+ ER+R +E++ RK +GS Sbjct: 243 DSAVRITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEAERERAQSEQAGARKAMVGS 302 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF QGR+TDHRINLTL++L +L+G + ++I+ L+ +A + Sbjct: 303 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALVAEDEAARLAQL 359 >gi|148258772|ref|YP_001243357.1| peptide chain release factor 1 [Bradyrhizobium sp. BTAi1] gi|146410945|gb|ABQ39451.1| bacterial peptide chain release factor 1 (bRF-1) [Bradyrhizobium sp. BTAi1] Length = 361 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 190/349 (54%), Positives = 251/349 (71%), Gaps = 2/349 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E + + D Y+++T E A ++P+I + Y +E Sbjct: 1 MSSLPEAKLDVLLAHHASLEAELLGQVNSDRYVQITRELAELNPLIEAVKAYRAGVKELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I D +D+E+R +A+ E + ELE +I LLPKD DD++ +LEIRAGT Sbjct: 61 DTEALIADPATDAEMRAMAEAERDELIARRGELEQKIRVALLPKDAMDDRNVVLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYER+A+L+ WKVEV+S+S+ GGYKEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE E+DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKQDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITHIPTGI+V +SQH+NR AM +LR+R+YD ER+++ RSA RK ++GS Sbjct: 241 ESAIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQKVDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T H Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 349 >gi|194736546|ref|YP_002114806.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|238689756|sp|B4TXU2|RF1_SALSV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194712048|gb|ACF91269.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|322616772|gb|EFY13680.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620418|gb|EFY17284.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625680|gb|EFY22499.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626130|gb|EFY22940.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633737|gb|EFY30477.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638891|gb|EFY35584.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640874|gb|EFY37523.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644095|gb|EFY40640.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649166|gb|EFY45604.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655325|gb|EFY51633.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660917|gb|EFY57148.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662786|gb|EFY58993.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667970|gb|EFY64129.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322674268|gb|EFY70362.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678549|gb|EFY74607.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683208|gb|EFY79224.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686902|gb|EFY82880.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323195208|gb|EFZ80388.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200201|gb|EFZ85287.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204529|gb|EFZ89533.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207354|gb|EFZ92302.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213949|gb|EFZ98718.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217339|gb|EGA02058.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323219317|gb|EGA03806.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323228020|gb|EGA12165.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231361|gb|EGA15474.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235801|gb|EGA19880.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323240370|gb|EGA24413.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245262|gb|EGA29262.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323252824|gb|EGA36660.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254893|gb|EGA38687.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323261018|gb|EGA44613.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266735|gb|EGA50221.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268942|gb|EGA52398.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 360 Score = 274 bits (701), Expect = 1e-71, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|184153097|ref|YP_001841438.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112] gi|238058717|sp|B2G676|RF1_LACRJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|183224441|dbj|BAG24958.1| peptide chain release factor 1 [Lactobacillus reuteri JCM 1112] Length = 360 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 158/353 (44%), Positives = 237/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Q D Sbjct: 6 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D ++ L + E+ +E +LE E+ LL+PKD +DDK+ I+EIR GG Sbjct: 66 ELLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + WKVEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 125 EASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQHVN T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ + RK IG+GDR Sbjct: 245 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q + + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLDEIIEALIVADQTQKLEQL 357 >gi|218289204|ref|ZP_03493439.1| peptide chain release factor 1 [Alicyclobacillus acidocaldarius LAA1] gi|218240552|gb|EED07732.1| peptide chain release factor 1 [Alicyclobacillus acidocaldarius LAA1] Length = 356 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 160/350 (45%), Positives = 230/350 (65%), Gaps = 5/350 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ + + KL +E A ++ + + + Q + Sbjct: 3 DRLASMEERYEHLSQLLCRPDVASDPEKLRSYAKEQAELAETVEVYREWKKVSQNIDEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R+ + E+ ++ LE+ + LLLPKD +DDK +EIRA GG Sbjct: 63 AMLQDKLDD-EMREFVKAELAELQPRREGLEHRLKILLLPKDPNDDKDVFVEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L RMY+RYA WK E++ +S D GG++E+V + G+G ++++KFESG H Sbjct: 122 EAALFAAELLRMYQRYAEKHGWKTEIIDASYTDMGGFREVVMAVHGKGAYAKLKFESGTH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E++V+I +D+RIDT ++G GGQ VNTT SA Sbjct: 182 RVQRVPITESGGRIHTSTATVAVLPEVEEVEVEIHEKDLRIDTFCSTGPGGQSVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V EKSQ +N+ +AM+VLRARLY+ ++ E +A R+LQ+G+GDR Sbjct: 242 VRITHLPTGIVVSCQDEKSQLKNKEKAMRVLRARLYEKAQREQQEELAAKRRLQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 SERIRTYNF Q R+TDHRI LTL+KL+ VL G +D+II L+ QA+M+ Sbjct: 302 SERIRTYNFPQSRVTDHRIGLTLHKLDAVLDGELDEIIQALIVESQAEML 351 >gi|56413303|ref|YP_150378.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362228|ref|YP_002141865.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81599266|sp|Q5PCQ9|RF1_SALPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690759|sp|B5BI75|RF1_SALPK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56127560|gb|AAV77066.1| peptide chain release factor 1 (RF-1) [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093705|emb|CAR59177.1| peptide chain release factor 1 (RF-1) [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 360 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDS+ Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSS 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|167464538|ref|ZP_02329627.1| peptide chain release factor 1 [Paenibacillus larvae subsp. larvae BRL-230010] Length = 357 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 153/358 (42%), Positives = 228/358 (63%), Gaps = 5/358 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQ 60 + ++ L +R+ ++ + + KL ++E + + Y Q + + Sbjct: 1 MMLDRLQALADRYEKLSELLCDPDVTSDTKKLREYSKEQSGLQEAYDTYMEYKQVLGQLE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D E+ +L ++E+ + ELE + L+LPKD +D+K+ I+E+R Sbjct: 61 AAKAMQKEKLDD-EMSELVKMEIEELSGRKEELEERLKILMLPKDPNDNKNVIVEVRGAA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DL+RMY RYA + WK EVL ++ ND GG+KEI I G G +S++K+ES Sbjct: 120 GGDEAALFAADLYRMYSRYAESQGWKTEVLDANLNDLGGFKEITFMIKGNGAYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+P TE+ GR+HTS +TVAV+PE +ID++I DIR+DT +SG+GGQ VNTT Sbjct: 180 GAHRVQRIPVTESGGRIHTSTSTVAVMPEMEDIDIEIKDSDIRVDTFCSSGAGGQSVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+TH+PTGI+ KSQ+ N+ +A++VLRAR+YD R+ + + RK ++G+ Sbjct: 240 KSAVRVTHVPTGIVATCQDGKSQNDNKAKALQVLRARIYDQVRQEEEAKYAGERKSKVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF Q R+TDHRI LTL+KL+ +L G +++II L A QA+ + + Sbjct: 300 GDRSERIRTYNFPQSRVTDHRIGLTLHKLDSILGGDLEEIITALTMAAQAEQLEKGEQ 357 >gi|160876841|ref|YP_001556157.1| peptide chain release factor 1 [Shewanella baltica OS195] gi|189039990|sp|A9L2D4|RF1_SHEB9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160862363|gb|ABX50897.1| peptide chain release factor 1 [Shewanella baltica OS195] gi|315269044|gb|ADT95897.1| peptide chain release factor 1 [Shewanella baltica OS678] Length = 363 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EYA + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVMALLGDASVISDQDRFRALSKEYAQLEDVVAGFKAYQQAQV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + ++ LE+E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAKLEHLEDELQILLLPKDPDDDKNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++S ++ + GG+KE++ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQIEIMSCNEGEHGGFKEVIMKVSGDGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA + + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILLPLMQEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|307304754|ref|ZP_07584504.1| peptide chain release factor 1 [Shewanella baltica BA175] gi|306912156|gb|EFN42580.1| peptide chain release factor 1 [Shewanella baltica BA175] Length = 363 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EYA + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVMALLGDASVILDQDRFRALSKEYAQLEDVVAGFKAYQQAQV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + ++ LE+E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAKLEHLEDELQILLLPKDPDDDKNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++S ++ + GG+KE++ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQIEIMSCNEGEHGGFKEVIMKVSGDGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ +E ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQALEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA + + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILLPLMQEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|227890652|ref|ZP_04008457.1| peptide chain release factor 1 [Lactobacillus salivarius ATCC 11741] gi|227867590|gb|EEJ75011.1| peptide chain release factor 1 [Lactobacillus salivarius ATCC 11741] Length = 360 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++R+ E+ +S+ + + KL++E A + + K + Y + Q+ D Sbjct: 6 DRLQMLEDRYEELGELLSDPDVISDTKRFTKLSKEMADLRETVEKYNKYKEVTQQISDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ L + E+ + E +LE EI LLLPKD +DDK+ I+EIR GG Sbjct: 66 EMLSDGLDD-EMASLVKEELSNAKDEKVKLEEEIKILLLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W +EV+ + + GG+KEI I+G V+S++K+ESG H Sbjct: 125 EASLFAADLFSMYSKYAERQGWSIEVIDKNVTEVGGFKEIALIINGNSVWSKLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GRVHTS ATV V+PE ++++++ +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRIPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQ QNR +AMK+L+AR+YD ++ +E ANRK +G+GDR Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYAQQEQSEYDANRKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G ++D+I+ L+ Q K + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALILFEQTKAMEKLE 358 >gi|317502848|ref|ZP_07960949.1| peptide chain release factor RF1 [Prevotella salivae DSM 15606] gi|315666037|gb|EFV05603.1| peptide chain release factor RF1 [Prevotella salivae DSM 15606] Length = 370 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 221/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + Y+KLT+E+ + I++ Y ++ Sbjct: 9 EKLDGLESRFEEVSTLITDPDVIADQKRYVKLTKEWKDLGDIMNARKRYISCLDSIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D++++++A+ E+ E +LE EI LL+PKD +D K+ +EIRAGTGG Sbjct: 69 NILA-NEDDADMKEMAREELQENESLQPKLEEEIKLLLVPKDPEDAKNVQMEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++Y ++ W + + S+ GGYKEI ISG V+ MK+ESGVH Sbjct: 128 EAALFAGDLFNMYKKYCDMKGWILSITDVSEGAVGGYKEIDFAISGTDVYGIMKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GR+ TSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPVTESNGRMQTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L ++D E ++ ++ + RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTFIHDREHQKYVDDIADRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I D+I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFLNGNIQDMIDALTVAENAEKLKE 367 >gi|295397091|ref|ZP_06807203.1| peptide chain release factor RF1 [Aerococcus viridans ATCC 11563] gi|294974683|gb|EFG50398.1| peptide chain release factor RF1 [Aerococcus viridans ATCC 11563] Length = 357 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 230/355 (64%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ R+AE+ MS+ ++ + +++E A + P + S Y Q +D Sbjct: 4 DQLDSFIARYAEVTELMSDPDVINDNQRFRAISKEEADLRPKVETFSHYKDVIQAIEDTE 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + D E+ +LA+ E+ ++ E LE EI L++P D +DDK+ I+EIR GG Sbjct: 64 ELLAESSDD-EMTELAKEELKELKAERESLEEEIKRLMIPSDPNDDKNIIMEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL+ MY RYA + W+VEV+ SS ND GG+KEI I G V+S++KFESG H Sbjct: 123 EAQLFAGDLYEMYSRYATSQGWRVEVIESSSNDIGGFKEITLQIQGDKVYSKLKFESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS ATV V+PE +ID D+ DIRID RASG+GGQHVN T SA Sbjct: 183 RVQRVPDTESQGRVHTSTATVGVMPELEDIDFDLDEGDIRIDIYRASGAGGQHVNKTSSA 242 Query: 244 VRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTG + ++SQ QN+ +AM +LR+R+Y+ NE + RK +G+GDR Sbjct: 243 VRLTHEPTGIQVAMQDQRSQQQNKDKAMMILRSRVYEKIASEQQNEYDSQRKNLVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ Q R+TDHRI LT+ KL+ ++ G +D+I++ LL A QA + ++ Sbjct: 303 SERIRTYNYPQNRVTDHRIGLTIQKLDRIMTGELDEIVDALLLADQANKLEELND 357 >gi|229545076|ref|ZP_04433801.1| peptide chain release factor 1 [Enterococcus faecalis TX1322] gi|307287617|ref|ZP_07567660.1| peptide chain release factor 1 [Enterococcus faecalis TX0109] gi|229309968|gb|EEN75955.1| peptide chain release factor 1 [Enterococcus faecalis TX1322] gi|306501355|gb|EFM70658.1| peptide chain release factor 1 [Enterococcus faecalis TX0109] gi|315165014|gb|EFU09031.1| peptide chain release factor 1 [Enterococcus faecalis TX1302] Length = 357 Score = 274 bits (700), Expect = 1e-71, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 241/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y Q + D Sbjct: 3 DQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISDAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D+E+ ++A+ E+ ++KE LE+ I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLSE-NLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WKVEVL ++ GGYKE++ ISG VFS++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAEAQGWKVEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++++ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEM 354 >gi|120600166|ref|YP_964740.1| peptide chain release factor 1 [Shewanella sp. W3-18-1] gi|146291906|ref|YP_001182330.1| peptide chain release factor 1 [Shewanella putrefaciens CN-32] gi|166223604|sp|A4Y3J8|RF1_SHEPC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223606|sp|A1RNE1|RF1_SHESW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120560259|gb|ABM26186.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella sp. W3-18-1] gi|145563596|gb|ABP74531.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella putrefaciens CN-32] gi|319425197|gb|ADV53271.1| peptide chain release factor 1 [Shewanella putrefaciens 200] Length = 363 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EY+ + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVLALLGDASVIADQDRFRALSKEYSQLEEVVAGFKAYQQAQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + E+ LE+E+ LLLPKD +DD + +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAELERLESELQILLLPKDPNDDTNAFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++EV+S ++ + GG+KEI+ +SG G + ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQMEVMSCNEGEHGGFKEIIVKVSGEGAYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV V+ E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA ++ + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILTPLMQEHQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|283832855|ref|ZP_06352596.1| peptide chain release factor 1 [Citrobacter youngae ATCC 29220] gi|291071455|gb|EFE09564.1| peptide chain release factor 1 [Citrobacter youngae ATCC 29220] Length = 360 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKCEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GG+KE++A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSASEGEHGGFKEVIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E R ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEVARRQQAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEAMEGKLDMLIEPIVQEYQADQLAALSE 358 >gi|15616337|ref|NP_244642.1| peptide chain release factor 1 [Bacillus halodurans C-125] gi|20139353|sp|Q9K6F4|RF1_BACHD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|10176399|dbj|BAB07494.1| peptide chain release factor 1 in translation [Bacillus halodurans C-125] Length = 356 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 234/355 (65%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L R+ + +S+ + KL ++E A + + Y + QD Sbjct: 3 ERLQSLDERYERLNELLSDPEVISDSNKLREYSKEQADMEETVQVYREYKTVMDQYQDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ + + E+ + +LE ++ LLLPKD +DDK+ I+E+R GG Sbjct: 63 EMLEDKLDD-EMYAMVKEEIDELATRKEDLEAKLKVLLLPKDPNDDKNVIVEVRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF DL++MY RYA + WK+EV+ +S + GGYKEI+ +++G+G +S++K+E+G H Sbjct: 122 EAQLFAADLYKMYARYAEAQGWKIEVIEASSTELGGYKEIIFSVNGKGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++VDI +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPQTESGGRIHTSTATVAVLPEAEEVEVDIHEKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+GDR Sbjct: 242 VRLTHLPTGIVVSCQDEKSQIKNKEKAMKVLRARIYDKFQQEAQAEYDQTRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF Q R+TDHRI LTL KLE +LQG +D+II L+ QA+++ + Sbjct: 302 SERIRTYNFPQSRVTDHRIGLTLQKLEQILQGKLDEIIESLIVHEQAELMKQQED 356 >gi|260890431|ref|ZP_05901694.1| peptide chain release factor 1 [Leptotrichia hofstadii F0254] gi|260860051|gb|EEX74551.1| peptide chain release factor 1 [Leptotrichia hofstadii F0254] Length = 360 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 244/355 (68%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ D+ + E+ + + V K+ + +I ++ K + Y +K+E + L Sbjct: 3 QKLDDVVLKHKELTEMLMDPEVVSDPKKIMEYNKALNSIDEVVQKYTYYKNRKEEMESLK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + DSE++++ E+ +IE+EI +LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 EDLK-AEKDSEMKEMMLEEIHSIEEEIPQLEEELKILLLPKDPNDDKNVIMEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF D+FRM+ RYA +WK E++ S+ GG KE+ I G G +SR+KFESGVH Sbjct: 122 EAALFAADIFRMFTRYAERNRWKTEIIDKSEIGVGGLKEVTFLIKGNGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATE+SGRVHTS TVAVLPE + +V+I D++IDT R+SG+GGQHVNTTDS Sbjct: 182 RVQRVPATESSGRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V + +SQ +NR AMKVL ++LY++E ++ + R+ Q+GSGD Sbjct: 242 AVRITHLPTGLVVTSQDGRSQIKNREAAMKVLASKLYEMEYEKQRSAVENERRSQVGSGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSE+IRTYNF QGR+TDHRI LTL++LE VL G +D++I+ L+ QA+++ Sbjct: 302 RSEKIRTYNFPQGRVTDHRIKLTLHRLEGVLDGDLDEMIDALIAYEQAELLKEVG 356 >gi|199597587|ref|ZP_03211016.1| Protein chain release factor A [Lactobacillus rhamnosus HN001] gi|258508166|ref|YP_003170917.1| peptide chain release factor 1 [Lactobacillus rhamnosus GG] gi|258539381|ref|YP_003173880.1| peptide chain release factor 1 [Lactobacillus rhamnosus Lc 705] gi|199591610|gb|EDY99687.1| Protein chain release factor A [Lactobacillus rhamnosus HN001] gi|257148093|emb|CAR87066.1| Peptide chain release factor 1 [Lactobacillus rhamnosus GG] gi|257151057|emb|CAR90029.1| Peptide chain release factor 1 [Lactobacillus rhamnosus Lc 705] gi|259649483|dbj|BAI41645.1| peptide chain release factor [Lactobacillus rhamnosus GG] Length = 359 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 238/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ L R+ E+E MS+ + Y+ L++E + +++ Y Q + ++ Sbjct: 6 EQLDGLLVRYEELEELMSDPEVISDTKRYLALSKEEGGMRDVVAAYKKYKQVLSDIKESE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + + D ++ LA+ ++ ++K+ +LE +I L+LPKD +DDK+ I+EIR GG Sbjct: 66 EVLRE-SKDEDMEALAKEDLEDLQKQKADLEEKIKVLMLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL MY YA + WK E++ S+ + GGYKE+V I+G V+S++K+E+G H Sbjct: 125 EASLFAGDLLNMYMHYAERQGWKAEIVDSTPTEVGGYKEVVVMITGDNVYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE E+D+ I +DIR D R+SG+GGQHVN T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEYDEVDLKIDPKDIRTDVYRSSGAGGQHVNKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ E+SQ +NR RAM++LR+R+YD + NRK IG+GDR Sbjct: 245 VRMTHIPTGIVVSMQDERSQQENRARAMQILRSRVYDYYETENQEKYDQNRKNAIGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ QA+ + S + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIIDALIVHDQAQKMESLN 358 >gi|332687009|ref|YP_004456783.1| peptide chain release factor 1 [Melissococcus plutonius ATCC 35311] gi|332371018|dbj|BAK21974.1| peptide chain release factor 1 [Melissococcus plutonius ATCC 35311] Length = 358 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 241/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + ++KL++E A + + Y Q Q +D Sbjct: 3 DQLQAIEDRYEELGELLSDPEIISDTNRFLKLSKEEANLRETVEVYRRYKQVIQGIKDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ + +SE+ ++A+ E+ +++E L + I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLGE-SLESEMLEMAKEELSELKQEKEVLGDRIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G+LF MY++YA L+ WK+EV+ ++ GGYKE++ I+G VFS++K+ESG H Sbjct: 122 EAALFAGNLFSMYQKYAELQGWKIEVMDANITGIGGYKEVIMMITGENVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++D+ +DIR D ASG+GGQH+N T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIDLEDKDIRTDIYHASGAGGQHINKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMK+LR R+YD ++ + A+RK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKILRTRVYDQLQQEAQSAYDADRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LTL KL+ VL G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTLQKLDQVLSGKLDEIIDALVLYDQTSKLEEL 354 >gi|157828568|ref|YP_001494810.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933282|ref|YP_001650071.1| peptide chain release factor 1 [Rickettsia rickettsii str. Iowa] gi|166223598|sp|A8GSC7|RF1_RICRS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039987|sp|B0BXT9|RF1_RICRO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157801049|gb|ABV76302.1| peptide chain release factor 1 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908369|gb|ABY72665.1| bacterial peptide chain release factor 1 (RF-1) [Rickettsia rickettsii str. Iowa] Length = 355 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 249/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ R+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQARADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRI+LTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRIHLTLYKIDEVVKNGQLDEFVEALIADDEAKKLLE 354 >gi|85375680|ref|YP_459742.1| peptide chain release factor 1 [Erythrobacter litoralis HTCC2594] gi|122543160|sp|Q2N5U6|RF1_ERYLH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|84788763|gb|ABC64945.1| protein chain release factor A [Erythrobacter litoralis HTCC2594] Length = 355 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 180/357 (50%), Positives = 255/357 (71%), Gaps = 7/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + ++ + NRFAE+E RM+ + +++ + +YA + P+ + ++E L Sbjct: 3 IPATRLDQIANRFAELEARMASGTLEGEEFVQASRDYAELEPVAKVAAEVKAMREEIGGL 62 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E++ +AQ E+ AI + + E E ++ +LPKD+ D+K +LEIRAGTGG Sbjct: 63 EEMLA----DPEMKAMAQEELAAIREALPEKERQLAIAMLPKDSADNKPAMLEIRAGTGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDL+RMYER+A + WKVE +S + ++ GG+KEIVA +SG GVF+++KFESGV Sbjct: 119 DEAALFAGDLYRMYERFAGEQGWKVEPVSMNASEVGGFKEIVANVSGTGVFAKLKFESGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV I +D++ID RASG+GGQHVNTTDS Sbjct: 179 HRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQIDDKDLKIDIYRASGAGGQHVNTTDS 238 Query: 243 AVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V + +SQH+N+ +AM+VLR RLYD R++ E +A RK +GSGD Sbjct: 239 AVRITHLPTGIVVQQQDERSQHKNKAKAMQVLRTRLYDHLREQSQGEEAAARKAMVGSGD 298 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGR+TDHRI LTL+KL+ ++ G + +++ L+ +AK + + SE Sbjct: 299 RSERIRTYNFPQGRVTDHRIGLTLHKLDEIIAGPGLGELVGALIAEDEAKRLAALSE 355 >gi|161503112|ref|YP_001570224.1| peptide chain release factor 1 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189039988|sp|A9MPA1|RF1_SALAR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160864459|gb|ABX21082.1| hypothetical protein SARI_01177 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 360 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 250/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGEGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 358 >gi|126172944|ref|YP_001049093.1| peptide chain release factor 1 [Shewanella baltica OS155] gi|217974700|ref|YP_002359451.1| peptide chain release factor 1 [Shewanella baltica OS223] gi|166223601|sp|A3D0G1|RF1_SHEB5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790896|sp|B8E815|RF1_SHEB2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|125996149|gb|ABN60224.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella baltica OS155] gi|217499835|gb|ACK48028.1| peptide chain release factor 1 [Shewanella baltica OS223] Length = 363 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 244/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EYA + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVMALLGDASVISDQDRFRALSKEYAQLEDVVAGFKAYQQAQV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + ++ LE+E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAKLEHLEDELQILLLPKDPDDDKNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++S ++ + GG+KE++ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQIEIMSCNEGEHGGFKEVIMKVSGDGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ +E ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQALEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA + + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILLPLMQEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|29377042|ref|NP_816196.1| peptide chain release factor 1 [Enterococcus faecalis V583] gi|227519760|ref|ZP_03949809.1| peptide chain release factor 1 [Enterococcus faecalis TX0104] gi|227554052|ref|ZP_03984099.1| peptide chain release factor 1 [Enterococcus faecalis HH22] gi|229549320|ref|ZP_04438045.1| peptide chain release factor 1 [Enterococcus faecalis ATCC 29200] gi|255972029|ref|ZP_05422615.1| peptide chain release factor 1 [Enterococcus faecalis T1] gi|255975086|ref|ZP_05425672.1| peptide chain release factor 1 [Enterococcus faecalis T2] gi|256616929|ref|ZP_05473775.1| peptide chain release factor 1 [Enterococcus faecalis ATCC 4200] gi|256763197|ref|ZP_05503777.1| peptide chain release factor 1 [Enterococcus faecalis T3] gi|256853870|ref|ZP_05559235.1| peptide chain release factor 1 [Enterococcus faecalis T8] gi|256957798|ref|ZP_05561969.1| peptide chain release factor 1 [Enterococcus faecalis DS5] gi|256961203|ref|ZP_05565374.1| peptide chain release factor 1 [Enterococcus faecalis Merz96] gi|256963678|ref|ZP_05567849.1| peptide chain release factor 1 [Enterococcus faecalis HIP11704] gi|257079736|ref|ZP_05574097.1| peptide chain release factor 1 [Enterococcus faecalis JH1] gi|257081918|ref|ZP_05576279.1| peptide chain release factor 1 [Enterococcus faecalis E1Sol] gi|257084460|ref|ZP_05578821.1| peptide chain release factor 1 [Enterococcus faecalis Fly1] gi|257087541|ref|ZP_05581902.1| peptide chain release factor 1 [Enterococcus faecalis D6] gi|257090700|ref|ZP_05585061.1| peptide chain release factor 1 [Enterococcus faecalis CH188] gi|257416748|ref|ZP_05593742.1| peptide chain release factor 1 [Enterococcus faecalis AR01/DG] gi|257419965|ref|ZP_05596959.1| peptide chain release factor [Enterococcus faecalis T11] gi|293384152|ref|ZP_06630046.1| peptide chain release factor 1 [Enterococcus faecalis R712] gi|293386966|ref|ZP_06631535.1| peptide chain release factor 1 [Enterococcus faecalis S613] gi|294779688|ref|ZP_06745078.1| peptide chain release factor 1 [Enterococcus faecalis PC1.1] gi|300861212|ref|ZP_07107299.1| peptide chain release factor 1 [Enterococcus faecalis TUSoD Ef11] gi|307270729|ref|ZP_07552020.1| peptide chain release factor 1 [Enterococcus faecalis TX4248] gi|307271624|ref|ZP_07552895.1| peptide chain release factor 1 [Enterococcus faecalis TX0855] gi|307276806|ref|ZP_07557917.1| peptide chain release factor 1 [Enterococcus faecalis TX2134] gi|307285597|ref|ZP_07565736.1| peptide chain release factor 1 [Enterococcus faecalis TX0860] gi|307290429|ref|ZP_07570344.1| peptide chain release factor 1 [Enterococcus faecalis TX0411] gi|312899933|ref|ZP_07759251.1| peptide chain release factor 1 [Enterococcus faecalis TX0470] gi|312905241|ref|ZP_07764361.1| peptide chain release factor 1 [Enterococcus faecalis TX0635] gi|312907897|ref|ZP_07766880.1| peptide chain release factor 1 [Enterococcus faecalis DAPTO 512] gi|312953588|ref|ZP_07772425.1| peptide chain release factor 1 [Enterococcus faecalis TX0102] gi|312978574|ref|ZP_07790312.1| peptide chain release factor 1 [Enterococcus faecalis DAPTO 516] gi|46576782|sp|Q831F6|RF1_ENTFA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|29344508|gb|AAO82266.1| peptide chain release factor 1 [Enterococcus faecalis V583] gi|227072848|gb|EEI10811.1| peptide chain release factor 1 [Enterococcus faecalis TX0104] gi|227176800|gb|EEI57772.1| peptide chain release factor 1 [Enterococcus faecalis HH22] gi|229305557|gb|EEN71553.1| peptide chain release factor 1 [Enterococcus faecalis ATCC 29200] gi|255963047|gb|EET95523.1| peptide chain release factor 1 [Enterococcus faecalis T1] gi|255967958|gb|EET98580.1| peptide chain release factor 1 [Enterococcus faecalis T2] gi|256596456|gb|EEU15632.1| peptide chain release factor 1 [Enterococcus faecalis ATCC 4200] gi|256684448|gb|EEU24143.1| peptide chain release factor 1 [Enterococcus faecalis T3] gi|256710813|gb|EEU25856.1| peptide chain release factor 1 [Enterococcus faecalis T8] gi|256948294|gb|EEU64926.1| peptide chain release factor 1 [Enterococcus faecalis DS5] gi|256951699|gb|EEU68331.1| peptide chain release factor 1 [Enterococcus faecalis Merz96] gi|256954174|gb|EEU70806.1| peptide chain release factor 1 [Enterococcus faecalis HIP11704] gi|256987766|gb|EEU75068.1| peptide chain release factor 1 [Enterococcus faecalis JH1] gi|256989948|gb|EEU77250.1| peptide chain release factor 1 [Enterococcus faecalis E1Sol] gi|256992490|gb|EEU79792.1| peptide chain release factor 1 [Enterococcus faecalis Fly1] gi|256995571|gb|EEU82873.1| peptide chain release factor 1 [Enterococcus faecalis D6] gi|256999512|gb|EEU86032.1| peptide chain release factor 1 [Enterococcus faecalis CH188] gi|257158576|gb|EEU88536.1| peptide chain release factor 1 [Enterococcus faecalis ARO1/DG] gi|257161793|gb|EEU91753.1| peptide chain release factor [Enterococcus faecalis T11] gi|291078632|gb|EFE15996.1| peptide chain release factor 1 [Enterococcus faecalis R712] gi|291083636|gb|EFE20599.1| peptide chain release factor 1 [Enterococcus faecalis S613] gi|294453242|gb|EFG21654.1| peptide chain release factor 1 [Enterococcus faecalis PC1.1] gi|295113546|emb|CBL32183.1| bacterial peptide chain release factor 1 (bRF-1) [Enterococcus sp. 7L76] gi|300850251|gb|EFK78001.1| peptide chain release factor 1 [Enterococcus faecalis TUSoD Ef11] gi|306498622|gb|EFM68124.1| peptide chain release factor 1 [Enterococcus faecalis TX0411] gi|306502821|gb|EFM72086.1| peptide chain release factor 1 [Enterococcus faecalis TX0860] gi|306506443|gb|EFM75602.1| peptide chain release factor 1 [Enterococcus faecalis TX2134] gi|306511502|gb|EFM80501.1| peptide chain release factor 1 [Enterococcus faecalis TX0855] gi|306513039|gb|EFM81680.1| peptide chain release factor 1 [Enterococcus faecalis TX4248] gi|310625988|gb|EFQ09271.1| peptide chain release factor 1 [Enterococcus faecalis DAPTO 512] gi|310628426|gb|EFQ11709.1| peptide chain release factor 1 [Enterococcus faecalis TX0102] gi|310631478|gb|EFQ14761.1| peptide chain release factor 1 [Enterococcus faecalis TX0635] gi|311288723|gb|EFQ67279.1| peptide chain release factor 1 [Enterococcus faecalis DAPTO 516] gi|311292929|gb|EFQ71485.1| peptide chain release factor 1 [Enterococcus faecalis TX0470] gi|315025302|gb|EFT37234.1| peptide chain release factor 1 [Enterococcus faecalis TX2137] gi|315030387|gb|EFT42319.1| peptide chain release factor 1 [Enterococcus faecalis TX4000] gi|315032691|gb|EFT44623.1| peptide chain release factor 1 [Enterococcus faecalis TX0017] gi|315035852|gb|EFT47784.1| peptide chain release factor 1 [Enterococcus faecalis TX0027] gi|315143714|gb|EFT87730.1| peptide chain release factor 1 [Enterococcus faecalis TX2141] gi|315148532|gb|EFT92548.1| peptide chain release factor 1 [Enterococcus faecalis TX4244] gi|315150059|gb|EFT94075.1| peptide chain release factor 1 [Enterococcus faecalis TX0012] gi|315151855|gb|EFT95871.1| peptide chain release factor 1 [Enterococcus faecalis TX0031] gi|315159264|gb|EFU03281.1| peptide chain release factor 1 [Enterococcus faecalis TX0312] gi|315161810|gb|EFU05827.1| peptide chain release factor 1 [Enterococcus faecalis TX0645] gi|315168548|gb|EFU12565.1| peptide chain release factor 1 [Enterococcus faecalis TX1341] gi|315170191|gb|EFU14208.1| peptide chain release factor 1 [Enterococcus faecalis TX1342] gi|315172490|gb|EFU16507.1| peptide chain release factor 1 [Enterococcus faecalis TX1346] gi|315574712|gb|EFU86903.1| peptide chain release factor 1 [Enterococcus faecalis TX0309B] gi|315579264|gb|EFU91455.1| peptide chain release factor 1 [Enterococcus faecalis TX0630] gi|315580976|gb|EFU93167.1| peptide chain release factor 1 [Enterococcus faecalis TX0309A] gi|323481494|gb|ADX80933.1| peptide chain release factor 1 [Enterococcus faecalis 62] gi|327535788|gb|AEA94622.1| peptide chain release factor RF1 [Enterococcus faecalis OG1RF] gi|329578086|gb|EGG59499.1| peptide chain release factor 1 [Enterococcus faecalis TX1467] Length = 357 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 166/353 (47%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y Q + D Sbjct: 3 DQLQSIEDRYEELGELLSDPAVISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISDAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D+E+ ++A+ E+ ++KE LE+ I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLSE-NLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WK EVL ++ GGYKE++ ISG VFS++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++++ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEM 354 >gi|42520141|ref|NP_966056.1| peptide chain release factor 1 [Wolbachia endosymbiont of Drosophila melanogaster] gi|58698355|ref|ZP_00373269.1| peptide chain release factor 1 [Wolbachia endosymbiont of Drosophila ananassae] gi|81652805|sp|Q73IC2|RF1_WOLPM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|42409878|gb|AAS13990.1| peptide chain release factor 1 [Wolbachia endosymbiont of Drosophila melanogaster] gi|58535109|gb|EAL59194.1| peptide chain release factor 1 [Wolbachia endosymbiont of Drosophila ananassae] Length = 359 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 184/359 (51%), Positives = 251/359 (69%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + DLK +F +IE + ++ +I L++EY+ + PII I Y+ K+E Sbjct: 1 MDMENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEIS 60 Query: 61 DLHTVIGDHNSDSEIRD-LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 DL ++ D NS+ +I++ + + + +++ ++ LLPKD DD ++ ILEIRAG Sbjct: 61 DLEEIMKDENSEGDIKELAKEEFFEKHKVLLPKIKAKLKLALLPKDEDDSRNAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF LFRMY++YA R WK E +S S+ GGYKE A I+G VF+R+KFE Sbjct: 121 TGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+SGR+HTSAATVA+LPE E+D I +D+RID R+SG GGQ VNT Sbjct: 181 SGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTGI+V EKSQH+N+ +A+KVLRARLY++ER++ ERS RK QIG Sbjct: 241 TDSAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF Q RITDHRINLT ++LE ++ +G +D+ I L++ ++A+ + S Sbjct: 301 SGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLAGES 359 >gi|323339960|ref|ZP_08080227.1| peptide chain release factor RF1 [Lactobacillus ruminis ATCC 25644] gi|323092602|gb|EFZ35207.1| peptide chain release factor RF1 [Lactobacillus ruminis ATCC 25644] Length = 362 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 156/360 (43%), Positives = 236/360 (65%), Gaps = 6/360 (1%) Query: 1 MVF-LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 M ++ L +R+ E+ +S+ + +++L++E A + + K Y Q Sbjct: 1 MKMDKLFDRLQMLADRYEELGELLSDPDVIADSKRFMELSKEMADLRETVEKYEKYKQVV 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 Q+ +D ++ D E+ + + E+ + E ++LE EI LLLPKD +D K I+EI Sbjct: 61 QQIKDDEEMLS-TGLDDEMAAMVKEELSDSKNEKQKLEQEIKILLLPKDPNDGKDLIMEI 119 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 R GG EA+LF DLF MY +YA + W +EV+ + + GG+KEI TI+G+ V+S++ Sbjct: 120 RGAAGGDEASLFAADLFSMYSKYAERQGWSIEVIDKNMTEVGGFKEIALTINGKNVWSKL 179 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ESG HRVQRVP TE++GRVHTS ATV V+PE ++++D+ +DIR+D R+SG+GGQH Sbjct: 180 KYESGAHRVQRVPVTESAGRVHTSTATVVVMPEEEDVEIDLDPKDIRVDVYRSSGAGGQH 239 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N T SAVR+TH+PTGI+V ++SQ QNR +AMK+L+AR+YD + + +E NRK Sbjct: 240 INKTSSAVRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYKSQEQSEYDENRKS 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYN+ Q R+TDHRI L+L KL+ ++ G +DD+I+ L+ Q K + Sbjct: 300 AVGTGDRSERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELDDVIDALVLYDQTKALEEL 359 >gi|302036343|ref|YP_003796665.1| peptide chain release factor RF-1 [Candidatus Nitrospira defluvii] gi|300604407|emb|CBK40739.1| Peptide chain release factor RF-1 [Candidatus Nitrospira defluvii] Length = 386 Score = 274 bits (700), Expect = 2e-71, Method: Composition-based stats. Identities = 159/360 (44%), Positives = 240/360 (66%), Gaps = 6/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQ 57 M K+ + RF E+ ++ + ++ KL +E + + Y + K+ Sbjct: 27 MEDGLIKKWEGMAARFQELTNQLMDPSVLNQPGMIHKLNKERTELEEPALQFIAYCEAKK 86 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +D+ ++ D ++ ++++ L E +++++ E+E+ L PKD D+K+ LEIR Sbjct: 87 QLEDVSALLQDASTGADMKQLFAEESDHLQQQVLEIEHRAKDFLTPKDPRDEKNMFLEIR 146 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY +YA + K+EV+ +S+ GGY+E++A + G+G + R++ Sbjct: 147 AGTGGDEAALFAGDLFRMYLKYAERNRLKLEVVDASETGIGGYREVIALLEGKGAYGRLR 206 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVP TEASGR+HTS TVAV+PE E++V I +D+RIDT +SG+GGQ V Sbjct: 207 YESGVHRVQRVPTTEASGRIHTSTVTVAVMPEVDEVEVHIDPKDLRIDTFCSSGAGGQSV 266 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTT SAVRITHIPTG++V E+SQ +NR +AM+ LRAR+ + ER++ E + NRK Q Sbjct: 267 NTTYSAVRITHIPTGVVVSCQDERSQLKNRTKAMRNLRARIVEAEREKQEAEIAQNRKSQ 326 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+GDRSE+IRTYNF Q R+TDHRI LT++KL+ VL G +++I+ L + + + S Sbjct: 327 VGTGDRSEKIRTYNFPQNRVTDHRIGLTVHKLDQVLAGDLEEIVQALRAHY--EHLASLE 384 >gi|163783081|ref|ZP_02178076.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1] gi|159881761|gb|EDP75270.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1] Length = 361 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 164/350 (46%), Positives = 239/350 (68%), Gaps = 6/350 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L ++ IE +S+ + Y +L+ E+ ++ + Y + ++E + Sbjct: 8 DKLEKLTEKYKRIEEELSKPEVIQDVKRYRELSREHKELAELYETYQEYKRLQRELNEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ E+++LAQ E+ I+ I ELE ++ LL+PKD +D K+ ILEIRAGTGG Sbjct: 68 ELLKSPE--KELKELAQEEIEDIQSRIPELEEKLKLLLVPKDPNDSKNVILEIRAGTGGE 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DL RMY++YA + WK +L+++ GGYKE++A I G G +SR+K+ESGVH Sbjct: 126 EAALFVADLLRMYQKYAEDKGWKFSILNANKTGLGGYKEVIALIEGEGAYSRLKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS ATVAVLPEA E DV+I +D++I+T RASG+GGQ+VNTT++A Sbjct: 186 RVQRIPVTESGGRIHTSTATVAVLPEADEADVEINPQDLKIETFRASGAGGQYVNTTETA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH PTGI+V E+SQ QN+ +A+K+L A+L D ++ E + RK Q+G+G+R Sbjct: 246 VRITHTPTGIVVSCQDERSQFQNKQKALKILYAKLKDFYERKKREEIARERKEQVGTGER 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 SE+IRTYNF Q R+TDHR+NLTLYKL VL+G +D+ I+ L + + Sbjct: 306 SEKIRTYNFPQNRVTDHRVNLTLYKLNDVLEGKLDEFIDALRAKELEERL 355 >gi|332295519|ref|YP_004437442.1| Peptide chain release factor 1 [Thermodesulfobium narugense DSM 14796] gi|332178622|gb|AEE14311.1| Peptide chain release factor 1 [Thermodesulfobium narugense DSM 14796] Length = 361 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 172/352 (48%), Positives = 240/352 (68%), Gaps = 6/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L NR+ EI +S ++ KL ++E A + +++ + ++ K DL + Sbjct: 10 ILKLINRYKEINELLSSLEIINNPSKLISLSQEKAELEEVVNNYNELNKLKNYLSDLKEL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 ++ D EI+ LA+ E +EK I LE+++ +LPKD D+K+ ILEIRAG GG EA Sbjct: 70 --KNSEDEEIKALAEEEFQVVEKNIENLESKLLNFILPKDPLDEKNIILEIRAGAGGEEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF +L RMY RYA + K E+LS ++ GG KE + +I G+ ++SR+KFESG HRV Sbjct: 128 ALFASELLRMYLRYAERKNAKTEILSINETGIGGIKEAIISIKGKRIYSRLKFESGTHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE+ GR+HTS ATVAVLPEA EID+ I +D++IDT RA G+GGQHVN TDSAVR Sbjct: 188 QRVPETESGGRIHTSTATVAVLPEADEIDITIDEKDLKIDTFRAGGAGGQHVNKTDSAVR 247 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+PTGI+V E+SQ QN+ +AM++L A++ + +R E + +R++Q+GSGDRSE Sbjct: 248 ITHLPTGIVVACQDERSQFQNKEKAMRILAAKILEEKRVASEKEIAMSRRIQVGSGDRSE 307 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYNF QGR+TDHRINLTLY+L VL G +D+II+ L+ A + + S Sbjct: 308 KIRTYNFPQGRVTDHRINLTLYRLNEVLDGDLDEIIDALIAAENIRKLELLS 359 >gi|260171648|ref|ZP_05758060.1| peptide chain release factor 1 [Bacteroides sp. D2] gi|299148543|ref|ZP_07041605.1| peptide chain release factor 1 [Bacteroides sp. 3_1_23] gi|315919960|ref|ZP_07916200.1| peptide chain release factor 1 [Bacteroides sp. D2] gi|298513304|gb|EFI37191.1| peptide chain release factor 1 [Bacteroides sp. 3_1_23] gi|313693835|gb|EFS30670.1| peptide chain release factor 1 [Bacteroides sp. D2] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEISTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYIQLLGNIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+E+R++A+ E+ ++ + LE EI +L+P D D K+ ILEIR G GG Sbjct: 69 NILA-NESDAEMREMAKEEMDNSQERLPVLEEEIKLMLVPADPQDSKNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV ++++ GG+KE+V +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSNANEGTAGGFKEVVCSVTGDNVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGIAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|297181089|gb|ADI17288.1| protein chain release factor a [uncultured alpha proteobacterium HF0070_17D04] Length = 359 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 187/359 (52%), Positives = 250/359 (69%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + + R E+E R++++ S+ D L+ E + P+ +I + + + + Sbjct: 1 MSIAQSMDKVLARRDEVESRLADAASMSPDELASLSRELFELRPVCEQIDLVRRLEGDRD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D+E+ ++AQ E+ IE + E N + LLLP+D DD ++ ILE+RAGT Sbjct: 61 AAVMLAEEAADDAEMAEMAQAEIQEIEARLPEEMNSLQLLLLPRDRDDSRNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF MY+R+AA W+ EV+ S+ GGYKE A I+G VF+R+KFES Sbjct: 121 GGDEAALFASDLFGMYQRFAAKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA ++D+D+ D+RID RASG GGQ VNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGIMV+ + KSQH+NR +AMK+LRARLYD ER R+ ER+A+RK Q+GS Sbjct: 241 DSAVRITHIPTGIMVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ G +D+++ L+ QA+ + E Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDQAQRLAEGGE 359 >gi|300214391|gb|ADJ78807.1| Peptide chain release factor 1 (RF-1) [Lactobacillus salivarius CECT 5713] Length = 360 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 237/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++R+ E+ +S+ + + KL++E A + + K + Y + Q+ D Sbjct: 6 DRLQMLEDRYEELGELLSDPDVISDTKRFTKLSKEMADLRETVEKYNKYKEVTQQISDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ L + E+ ++ E +LE EI LLLPKD +DDK+ I+EIR GG Sbjct: 66 EMLSDGLDD-EMASLVKEELSNVKDEKVKLEEEIKILLLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W +EV+ + + GG+KEI I+G V+S++K+ESG H Sbjct: 125 EASLFAADLFSMYSKYAERQGWSIEVIDKNVTEVGGFKEIALIINGNSVWSKLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GRVHTS ATV V+PE ++++++ +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRIPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQ QNR +AMK+L+AR+YD ++ +E ANRK +G+GDR Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYAQQEQSEYDANRKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G ++D+I+ L+ Q K + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALVLFEQTKAMEKLE 358 >gi|90961566|ref|YP_535482.1| peptide chain release factor 1 [Lactobacillus salivarius UCC118] gi|119361553|sp|Q1WUD6|RF1_LACS1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|90820760|gb|ABD99399.1| Bacterial Peptide Chain Release Factor 1 [Lactobacillus salivarius UCC118] Length = 360 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++R+ E+ +S+ + + KL++E A + + K + Y + Q+ D Sbjct: 6 DRLQMLEDRYEELGELLSDPDVISDTKRFTKLSKEMADLRETVEKYNKYKEVTQQISDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ L + E+ + E +LE EI LLLPKD +DDK+ I+EIR GG Sbjct: 66 EMLSDGLDD-EMASLVKEELSNAKNEKVKLEEEIKILLLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W +EV+ + + GG+KEI I+G V+S++K+ESG H Sbjct: 125 EASLFAADLFSMYSKYAERQGWSIEVIDKNVTEVGGFKEIALIINGNSVWSKLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GRVHTS ATV V+PE ++++++ +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRIPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQ QNR +AMK+L+AR+YD ++ +E ANRK +G+GDR Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYAQQEQSEYDANRKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G ++D+I+ L+ Q K + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALVLFEQTKAMEKLE 358 >gi|322383119|ref|ZP_08056946.1| peptide chain release factor 1-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321152781|gb|EFX45407.1| peptide chain release factor 1-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 356 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 153/357 (42%), Positives = 227/357 (63%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + KL ++E + + Y Q + + Sbjct: 1 MLDRLQALADRYEKLSELLCDPDVTSDTKKLREYSKEQSGLQEAYDTYMEYKQVLGQLEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D E+ +L ++E+ + ELE + L+LPKD +D+K+ I+E+R G Sbjct: 61 AKAMQKEKLDD-EMSELVKMEIEELSGRKEELEERLKILMLPKDPNDNKNVIVEVRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WK EVL ++ ND GG+KEI I G G +S++K+ESG Sbjct: 120 GDEAALFAADLYRMYSRYAESQGWKTEVLDANLNDLGGFKEITFMIKGNGAYSKLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TVAV+PE +ID++I DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPVTESGGRIHTSTSTVAVMPEMEDIDIEIKDSDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+ KSQ+ N+ +A++VLRAR+YD R+ + + RK ++G+G Sbjct: 240 SAVRVTHVPTGIVATCQDGKSQNDNKAKALQVLRARIYDQVRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LTL+KL+ +L G +++II L A QA+ + + Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTLHKLDSILGGDLEEIITALTMAAQAEQLEKGEQ 356 >gi|288819151|ref|YP_003433499.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6] gi|288788551|dbj|BAI70298.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6] gi|308752735|gb|ADO46218.1| peptide chain release factor 1 [Hydrogenobacter thermophilus TK-6] Length = 357 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 157/360 (43%), Positives = 236/360 (65%), Gaps = 11/360 (3%) Query: 3 FLS---HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 L +++ ++ R+ EI+ R+S + + KL+++ I ++ Y + + Sbjct: 1 MLPAQLEEKLEAIEKRYEEIQNRLSSQDVIRDRAQFAKLSKDLKDIGEVVDLYRRYKKVQ 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ ++ ++ + ++ + E+ +EL L+LPKD D ++ ILEI Sbjct: 61 KDIKEAQELLKSREFEELAKEEIKRLKREEERIEKEL----KILMLPKDERDSRNVILEI 116 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 RAG GG EAALFV DL MY++YA R WK +LS++ GGYKE++A I G G +SR+ Sbjct: 117 RAGVGGEEAALFVADLLNMYQKYAEERGWKFSILSANRTGLGGYKEVIALIEGVGAYSRL 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ESGVHRVQR+P TE+ GR+HTS ATVAVLPE E +++I +D++I+T RASG+GGQ+ Sbjct: 177 KYESGVHRVQRIPRTESGGRIHTSTATVAVLPEVDETELEINPQDLKIETFRASGAGGQY 236 Query: 237 VNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT++AVR+THIPTGI + E+SQ QN+ +A+K+L ARL D ++ E + RK+ Sbjct: 237 VNTTETAVRVTHIPTGISVACQDERSQFQNKQKALKILYARLKDFYERQKEEEIAKERKM 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+G+G+RSE+IRTYNF QGR+TDHRINLTLYKL VL+G +D+II L+ + + + Sbjct: 297 QVGTGERSEKIRTYNFPQGRVTDHRINLTLYKLHDVLEGKLDEIIEALIQHDIDEKLKAQ 356 >gi|329957131|ref|ZP_08297698.1| peptide chain release factor 1 [Bacteroides clarus YIT 12056] gi|328523399|gb|EGF50498.1| peptide chain release factor 1 [Bacteroides clarus YIT 12056] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQVLSGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D+E+R++A+ E+ A + ELE EI LL+P D D ++ ILEIR G GG Sbjct: 69 EIIA-NETDAEMREMAREELDACQARQPELEEEIKLLLVPADPQDSRNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+++ S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCETKGWKLDISSANEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|239787352|emb|CAX83829.1| Peptide chain release factor RF-1 [uncultured bacterium] Length = 354 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 180/358 (50%), Positives = 252/358 (70%), Gaps = 7/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ + R+ +++ ++ + + L++EYA + I I Y Q++ D Sbjct: 1 MTIQKKLDQIIERYLDLQKQLEQEVCDPKKFAGLSKEYAGLENIYQTILNYKSLLQQKAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +D +R LA+ E+ A++ E + LLLPKD DD++S ILEIRAGTG Sbjct: 61 AEIML----TDPGMRQLAEEELGALKLATEETWQMLRVLLLPKDVDDERSAILEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DL RMY+RYAA+ W+ +VL S+ G KE I G+GVF+++KFESG Sbjct: 117 GDEAGLFAADLMRMYQRYAAIHGWQFDVLGLSETGLGSVKEAQVGIVGKGVFAKLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGRVHTSAATVAVLPE ++D++I ED+RID RASG+GGQHVNTTD Sbjct: 177 VHRVQRVPETESSGRVHTSAATVAVLPEVEDVDIEIKDEDLRIDICRASGAGGQHVNTTD 236 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V + +SQH+N+ +AMK++RARLYD+ ++ R+A+RK Q+GSG Sbjct: 237 SAVRLTHLPTGLVVAQQDERSQHKNKAKAMKIMRARLYDLRKREQDEVRAADRKSQVGSG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF QGR+TDHRINLTLYKL+ V+QG +D++I+ L+ QA+ +G+A + Sbjct: 297 DRSERIRTYNFPQGRVTDHRINLTLYKLDQVMQGEALDELIDNLIADDQARKLGAAED 354 >gi|326803667|ref|YP_004321485.1| peptide chain release factor 1 [Aerococcus urinae ACS-120-V-Col10a] gi|326651316|gb|AEA01499.1| peptide chain release factor 1 [Aerococcus urinae ACS-120-V-Col10a] Length = 360 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 164/358 (45%), Positives = 233/358 (65%), Gaps = 5/358 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +Q+ R+ E+ +S+ ++ + L +E A + P + Y + + Sbjct: 1 MLEEQLDTFIARYQELAELLSDPDVINDHKRFRDLAKEEADLRPKVGTFKHYKEVVSGIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I + S+ ++ +LA+ E+ ++ E +LE EI L+LP D +DDK+ I+EIR Sbjct: 61 DTEELIKET-SEEDMLELAKSELDQLKAERDDLEEEIKVLMLPSDPNDDKNIIMEIRGAA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF DLF MY RYA + W VEV +S ND GGYKEI+ ISG V+S++K+ES Sbjct: 120 GGDEAQLFAADLFEMYSRYAESQGWHVEVADASSNDLGGYKEIILQISGDKVYSKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTS ATV V+PE ++D +I +DIR D RASG+GGQHVN T Sbjct: 180 GAHRVQRVPKTESQGRVHTSTATVGVMPELEDLDFEIDEKDIRTDIYRASGAGGQHVNKT 239 Query: 241 DSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+THIPTG + ++SQ QNR +AM +LR+R+YD + + +E RK +G+ Sbjct: 240 SSAVRMTHIPTGIQVAMQDQRSQQQNREKAMLILRSRVYDYYQSQEQDEYDEKRKNLVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYN+ Q R+TDHRINLTL KL+ ++ G +D+II+ L+ A QA+ + +E Sbjct: 300 GDRSERIRTYNYPQNRVTDHRINLTLQKLDRIMGGELDEIIDALILADQAQKLEELNE 357 >gi|167765221|ref|ZP_02437334.1| hypothetical protein BACSTE_03609 [Bacteroides stercoris ATCC 43183] gi|167696849|gb|EDS13428.1| hypothetical protein BACSTE_03609 [Bacteroides stercoris ATCC 43183] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQVLNGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D+E+R++A+ E+ A + ELE EI LL+P D D ++ ILEIR G GG Sbjct: 69 EIIA-NETDAEMREMAREELDACQARQPELEEEIKLLLVPADPQDSRNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + W++++ S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYTKYCEAKGWRLDISSANEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|114327270|ref|YP_744427.1| peptide chain release factor 1 [Granulibacter bethesdensis CGDNIH1] gi|119361545|sp|Q0BUJ8|RF1_GRABC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114315444|gb|ABI61504.1| bacterial peptide chain release factor 1 (RF-1) [Granulibacter bethesdensis CGDNIH1] Length = 352 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 237/355 (66%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + R E+ +SE + D++ + E A + P++++I ++ + Sbjct: 1 MSFTANLDRIVARAEELRASLSEGLNGDSFAAASRELAELEPVVARIEELWAAERGLAEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++R+LA+ E + +++ L EI LLPKD D++S ILEIR GG Sbjct: 61 EAMLA----DPDMRELAESEAEILREKLPSLTREIRIALLPKDEADERSAILEIRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF LF MY+RYA +R W+ E+L D GG K +A I+GR VF+R+K+ESGV Sbjct: 117 DEASLFAAQLFSMYQRYAEIRGWRFEILEYDDTGLGGLKGGMAEITGRSVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTS TVAVLPEA ++DV + D+RID RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATESQGRIHTSTVTVAVLPEAEDVDVQVDEGDLRIDVYRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+P+GI+V EKSQH+NR +AMK+L+ARLY+ +R + R+A+R+ Q+G+GD Sbjct: 237 AVRITHLPSGIVVAMQEEKSQHKNRAKAMKILKARLYEQQRAALHASRAADRRAQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +DD ++ L QA + + Sbjct: 297 RSERIRTYNFPQGRVSDHRINLTLYKIDRVMLGELDDFVDALTAEDQAARLSAQE 351 >gi|225386765|ref|ZP_03756529.1| hypothetical protein CLOSTASPAR_00513 [Clostridium asparagiforme DSM 15981] gi|225047127|gb|EEG57373.1| hypothetical protein CLOSTASPAR_00513 [Clostridium asparagiforme DSM 15981] Length = 358 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 257/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ L + + + KL +E A ++PI+ Y Q KQ+ +D Sbjct: 3 DKLDDILIHYEELMLMLGDPDVTQDTKRFTKLMKEQADLAPIVEAYKQYKQAKQDVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++A+ E+ +K I +LE+E+ LLLPKD +DDK+ ILEIRAG GG Sbjct: 63 AMLEEESD-EEMREMAKEELADAKKRIEDLEHELKILLLPKDPNDDKNIILEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA ++WKVE++S ++N GG+KE+VA ++G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYTNYADSQRWKVEIISLNENGIGGFKEVVAMVTGKGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA E+DV I + D RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEEVDVQIDMNDCRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++L+D+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLFDIELEKRQSSEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++++ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDSIMNGDIQELLDNLIAADQAAKLSKLNE 356 >gi|188534015|ref|YP_001907812.1| peptide chain release factor 1 [Erwinia tasmaniensis Et1/99] gi|238689693|sp|B2VEH7|RF1_ERWT9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|188029057|emb|CAO96925.1| Peptide chain release factor 1 (RF-1) [Erwinia tasmaniensis Et1/99] Length = 360 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + + L+ EYA ++ + + Q +++ + Sbjct: 8 KLEALQERHEEVEAMLGDAGVIADQERFRALSREYAQLTDVSQCFRQWQQSQEDIETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD+E+RD+AQ E+ ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----SDAEMRDMAQEELQTARAASEELEQQLQVLLLPKDPDDERNCYLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S+++ + GGYKE++A + G G + R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWKVEVMSANEGEHGGYKEVIAKVVGEGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPELPEAELPDINPSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E R E S+ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALGVLGSRIRAAEMARRQQEESSTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEAMEGKLDALIEPIVQEYQADQLAALS 357 >gi|198284467|ref|YP_002220788.1| peptide chain release factor 1 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218665453|ref|YP_002427134.1| peptide chain release factor 1 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248988|gb|ACH84581.1| peptide chain release factor 1 [Acidithiobacillus ferrooxidans ATCC 53993] gi|218517666|gb|ACK78252.1| peptide chain release factor 1 [Acidithiobacillus ferrooxidans ATCC 23270] Length = 365 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 175/364 (48%), Positives = 242/364 (66%), Gaps = 8/364 (2%) Query: 1 MVFLS--HKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQK 55 M Q+ L RF E+ ++ + L++E I P++ + + Q+ Sbjct: 1 MSLSPRLQSQLEQLAFRFDELSQLLASPGAAGDTQRFQSLSKELGEIGPVLELLRRHQQR 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +++ + ++ D+E+R LA EV A E E+ ++E + LLPKD +DD+S LE Sbjct: 61 QRDRDEGGRML-LEEQDAELRALASEEVAAAEAELDQIEAALRIRLLPKDPNDDRSVFLE 119 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAGTGG EAALF G L RMY RYA + + V +LS+SD++ GGYKE+V ISGRG +S Sbjct: 120 IRAGTGGEEAALFAGVLARMYTRYAESKGFGVVILSASDSERGGYKEVVLEISGRGAYSC 179 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGG 234 +KFESG HRVQRVP TE GR+HTSA TVAVLPE + D+RIDT RASG+GG Sbjct: 180 LKFESGGHRVQRVPETETQGRIHTSACTVAVLPEVDTVSEITINPADLRIDTYRASGAGG 239 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QH+N TDSA+RITH+P+G++V ++SQH+NR RAM +L+ARL + E+++ + + R Sbjct: 240 QHINKTDSAIRITHVPSGMVVTCQEDRSQHKNRARAMALLQARLLEQEQEKQQSAAAQTR 299 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +L +GSGDRSERIRTYNF QGRITDHRINLTLY+LE VL+G +D +I PL+ +QA ++ Sbjct: 300 RLLVGSGDRSERIRTYNFPQGRITDHRINLTLYRLEAVLEGDLDAVIEPLIKEYQADLLQ 359 Query: 354 SASE 357 + Sbjct: 360 HMGD 363 >gi|83592089|ref|YP_425841.1| peptide chain release factor 1 [Rhodospirillum rubrum ATCC 11170] gi|119361593|sp|Q2RWE1|RF1_RHORT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83575003|gb|ABC21554.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodospirillum rubrum ATCC 11170] Length = 354 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 185/357 (51%), Positives = 248/357 (69%), Gaps = 7/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMS-ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + + R E+ +S + + +++++ E A ++P++ I D K E Sbjct: 1 MSLEENLSRVVARHDELRALLSTSAGGGEGFVRMSRELADLAPVVEAIGRLDDAKAELAG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++RDLA+ EVL +E EI LE+ + LLLP+D DD+ ILE+RAGTG Sbjct: 61 ARALL----DDPDMRDLAREEVLRLEAEIPALEHGVKLLLLPRDEADDRGVILEVRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL RMYERYA R W+ EV+ +SD D GG KE A ISGRGVF+R+KFESG Sbjct: 117 GDEAALFAGDLLRMYERYAQERGWRFEVMEASDTDIGGIKEASAAISGRGVFARLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GR+HTSAATVAVLPEA E+DV+I +D+RIDT R+ G+GGQHVNTTD Sbjct: 177 VHRVQRVPVTEGGGRIHTSAATVAVLPEAEEVDVEIEEKDLRIDTYRSQGAGGQHVNTTD 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++ EKSQH+N+ +AM++LR +LYD R+ + R+ R++Q+GSG Sbjct: 237 SAVRITHLPSGVVAQCQDEKSQHKNKAKAMRMLRTKLYDHARQTADDARAEARRVQVGSG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTL++L VL G +D++I PL+ QA + Sbjct: 297 DRSERIRTYNFPQGRVTDHRIGLTLHRLPEVLAGTALDEVIEPLIAEDQATRMAEIG 353 >gi|270261428|ref|ZP_06189701.1| peptide chain release factor 1 [Serratia odorifera 4Rx13] gi|270044912|gb|EFA18003.1| peptide chain release factor 1 [Serratia odorifera 4Rx13] Length = 361 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EY+ ++ + + Q +++ Sbjct: 8 KLEALQERHEEVQALLGDAGVIAEQDRFRALSREYSQLTDVSRCFLEWRQVQEDLATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEEMKQAKAATEELEQQLQVLLLPKDPDDERGIFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A +SG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAETRRWRVEIMSANEGEHGGYKEVIAKVSGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPEVPEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + E ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMAKRQQEEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ V++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEVMEGKLDMLIQPIVQEYQADQLAALS 357 >gi|160887043|ref|ZP_02068046.1| hypothetical protein BACOVA_05057 [Bacteroides ovatus ATCC 8483] gi|237715527|ref|ZP_04546008.1| peptide chain release factor 1 [Bacteroides sp. D1] gi|262408537|ref|ZP_06085083.1| peptide chain release factor 1 [Bacteroides sp. 2_1_22] gi|293369398|ref|ZP_06615983.1| peptide chain release factor 1 [Bacteroides ovatus SD CMC 3f] gi|294646503|ref|ZP_06724140.1| peptide chain release factor 1 [Bacteroides ovatus SD CC 2a] gi|294807531|ref|ZP_06766328.1| peptide chain release factor 1 [Bacteroides xylanisolvens SD CC 1b] gi|298482182|ref|ZP_07000370.1| peptide chain release factor 1 [Bacteroides sp. D22] gi|156107454|gb|EDO09199.1| hypothetical protein BACOVA_05057 [Bacteroides ovatus ATCC 8483] gi|229444236|gb|EEO50027.1| peptide chain release factor 1 [Bacteroides sp. D1] gi|262353402|gb|EEZ02496.1| peptide chain release factor 1 [Bacteroides sp. 2_1_22] gi|292635565|gb|EFF54072.1| peptide chain release factor 1 [Bacteroides ovatus SD CMC 3f] gi|292638122|gb|EFF56503.1| peptide chain release factor 1 [Bacteroides ovatus SD CC 2a] gi|294445232|gb|EFG13902.1| peptide chain release factor 1 [Bacteroides xylanisolvens SD CC 1b] gi|295086791|emb|CBK68314.1| bacterial peptide chain release factor 1 (bRF-1) [Bacteroides xylanisolvens XB1A] gi|298271739|gb|EFI13312.1| peptide chain release factor 1 [Bacteroides sp. D22] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEISTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYIQLLGNIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+E+R++A+ E+ ++ + LE EI +L+P D D K+ ILEIR G GG Sbjct: 69 NILA-NESDAEMREMAKEEMDNSQERLPVLEEEIKLMLVPADPQDSKNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV ++++ GG+KEIV +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSNANEGTAGGFKEIVCSVTGDNVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGIAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|154500225|ref|ZP_02038263.1| hypothetical protein BACCAP_03889 [Bacteroides capillosus ATCC 29799] gi|150270957|gb|EDM98231.1| hypothetical protein BACCAP_03889 [Bacteroides capillosus ATCC 29799] Length = 355 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 169/357 (47%), Positives = 243/357 (68%), Gaps = 8/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L+ + ++ R++ + KL +E + + P++ Y +++Q+ ++ Sbjct: 1 MLDKLRSLELHYEDLVARLNAPETYGDPALVAKLNKEQSELEPLVETYRRYIRRQQDMEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +++ SD ++++LAQ E ++E ELE ++ LLLP D +D K+ I+EIRAG G Sbjct: 61 ARSLM----SDPDMKELAQEEFAQAKEEAEELEQKMKILLLPTDPNDGKNVIVEIRAGVG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF L+RMY YA R WKVEV S ++ + GG KEI T+ G G +SR+KFESG Sbjct: 117 GEEAALFANSLYRMYSMYAETRHWKVEVASLNETELGGIKEISFTVEGGGAYSRLKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ R+HTS TVAVLPEA E+DVDI DI + R+SG+GGQH+N T Sbjct: 177 VHRVQRVPETESGDRIHTSTVTVAVLPEAEEVDVDINPADIEMQVFRSSGAGGQHINKTS 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H PTG++V E+SQ QNR +AM++LR+RLY+ E++R++ E S R+ Q+G+G Sbjct: 237 SAVRLIHKPTGMVVECQQERSQFQNRDKAMQILRSRLYEAEQQRVSAEWSEERRSQVGTG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+ERIRTYNF QGR+TDHRI LTLYKLE V+ G +D+II+ L+TA QA+ + + E Sbjct: 297 MRNERIRTYNFPQGRLTDHRIGLTLYKLEDVMNGDLDEIIDSLITADQAERLKQSGE 353 >gi|146337703|ref|YP_001202751.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS278] gi|146190509|emb|CAL74508.1| peptide chain release factor 1 [Bradyrhizobium sp. ORS278] Length = 361 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 188/349 (53%), Positives = 252/349 (72%), Gaps = 2/349 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E + + D Y+++T E A ++P+I + Y +E Sbjct: 1 MSSLPEAKLDVLLAHHASLEAELLGQVNSDRYVQITRELAELNPLIDAVKAYRAGVKELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I D ++D+E+R +A+ E + ELE +I LLPKD DD++ +LEIRAGT Sbjct: 61 DTEALIADPDTDAEMRAMAESERDELVARRGELEQKIRIALLPKDAMDDRNVVLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYER+A+L+ WKVEV+S+S+ GGYKEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE ++DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEIEDVDVDIKQDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITHIPTGI+V +SQH+NR AM +LR+R+YD ER+++ RSA RK ++GS Sbjct: 241 ESAIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQKVDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++++ L T H Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELVDALTTEH 349 >gi|21672964|ref|NP_661029.1| peptide chain release factor 1 [Chlorobium tepidum TLS] gi|28201874|sp|Q8KG45|RF1_CHLTE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21646023|gb|AAM71371.1| peptide chain release factor 1 [Chlorobium tepidum TLS] Length = 357 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 155/353 (43%), Positives = 231/353 (65%), Gaps = 6/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K++F IE ++S+ V + + KL +EY+++ I+ + + K++ + H Sbjct: 3 DKLQSIKDKFQTIEQQLSDPEVVADQNRFRKLNKEYSSLKEIVRAYDEWSRTKKQLDEAH 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R L + E +++ + +LE ++ LLLPKD D ++ I+EIRAGTGG Sbjct: 63 SM-QKNENDPEMRALVEEEAGELQERLPKLEQQLKILLLPKDEADSRNAIIEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGV 182 EA LF DL RMY+RYA + W + L S+ G KE+ +SG V+ +KFESGV Sbjct: 122 EAGLFAADLMRMYQRYAERQGWSCQTLEVSEGSVPGSLKEVSLEVSGHNVYGILKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I ED+ IDT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRKEDLLIDTFRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+P+GI+V E+SQ QNR RAMK+LR++LYD++ R+ R+ + +GD Sbjct: 242 AVRITHVPSGIVVACQEERSQLQNRERAMKMLRSKLYDLQIAEQQKSRADLRRSMVTTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RS +IRTYNF Q R+TDHRI T + L ++QG +D +I L QA+ + + Sbjct: 302 RSAKIRTYNFPQSRVTDHRIGFTSHALPQIMQGELDPLIEALRMHDQAERLQA 354 >gi|319901262|ref|YP_004160990.1| bacterial peptide chain release factor 1 (bRF-1) [Bacteroides helcogenes P 36-108] gi|319416293|gb|ADV43404.1| bacterial peptide chain release factor 1 (bRF-1) [Bacteroides helcogenes P 36-108] Length = 370 Score = 273 bits (699), Expect = 2e-71, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 227/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELGDLMNARKEYMQVLNGIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + +D E+RD+A+ E+ + ELE +I LL+P D D ++ ILEIR GTGG Sbjct: 69 EIIT-NEADPEMRDMAREELDLCQARQPELEEQIKLLLVPTDPQDSRNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ ++ WK+EV S+++ GG+KEI+ +++G GV+ MK+ESGVH Sbjct: 128 EAAIFAGDLFRMYSKFCDIKGWKLEVSSANEGAAGGFKEIICSVTGDGVYGTMKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKD 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|315222986|ref|ZP_07864865.1| peptide chain release factor 1 [Streptococcus anginosus F0211] gi|315187936|gb|EFU21672.1| peptide chain release factor 1 [Streptococcus anginosus F0211] Length = 359 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 237/358 (66%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVATYREYKRVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LF GDL MY++YA + WK EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEASLFAGDLLTMYQKYAESQGWKFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEIVDALVLYDQTQKLEELN 358 >gi|145588324|ref|YP_001154921.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|189039983|sp|A4SV43|RF1_POLSQ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145046730|gb|ABP33357.1| bacterial peptide chain release factor 1 (bRF-1) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 359 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 176/362 (48%), Positives = 243/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ ++ +DAY KLT E++ I+ ++ + +Y + + Sbjct: 1 MKPSMRAKLDHLDTRLAELNSLLTSEEATKDMDAYRKLTREHSDIATVVEQFGLYKKAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + D E++D A E + + ELE + LLLPKD +D+++ LEIR Sbjct: 61 DAQAAEEMRK----DPEMKDFADEEQKQAQATMEELEGALQKLLLPKDVNDERNVFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+A + WKVEV++++++D GGYKE+V + G+ V+SR+K Sbjct: 117 AGTGGDESALFAGDLLRMYTRFAERQGWKVEVVNAAESDLGGYKEVVLRLVGQSVYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PEA E V I ++RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPQTETQGRIHTSACTVAVMPEADELEAVKINPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V ++SQH+NR +AMKVL +R+ D + + RK Sbjct: 237 INKTDSAVRITHIPTGTVVECQDDRSQHRNREQAMKVLVSRIMDAREREKHQLEAQTRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGRITDHRINLTLYK++ ++ G IDD+ N L + HQA+++ + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRITDHRINLTLYKIDAMMDGDIDDLCNALASEHQAELLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|319939134|ref|ZP_08013498.1| peptide chain release factor 1 [Streptococcus anginosus 1_2_62CV] gi|319812184|gb|EFW08450.1| peptide chain release factor 1 [Streptococcus anginosus 1_2_62CV] Length = 359 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 237/358 (66%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVATYRDYKRVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LF GDL MY++YA + WK EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEASLFAGDLLTMYQKYAESQGWKFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEIVDALVLYDQTQKLEELN 358 >gi|255020676|ref|ZP_05292738.1| Peptide chain release factor 1 [Acidithiobacillus caldus ATCC 51756] gi|254969912|gb|EET27412.1| Peptide chain release factor 1 [Acidithiobacillus caldus ATCC 51756] Length = 365 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 176/363 (48%), Positives = 244/363 (67%), Gaps = 8/363 (2%) Query: 1 MVFLS--HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQK 55 M Q+ L R E++ ++ V + + E I PI+ + ++++ Sbjct: 1 MSLSPRLEAQLEQLAERAEELQKALASPEIVQDNARFQAFSRELGEIQPILELLQAHEEQ 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +Q + ++ D E+R LA+ + E E+ +E + LLP+D +D+++ LE Sbjct: 61 RQRWDEARELL-LAERDPELRALAEEDQREAEAELARIEESLQVRLLPRDPNDERNVFLE 119 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAGTGG EAALF DL RMY RYA R + V VLSS++++ GGYKEIV ISGRG +SR Sbjct: 120 IRAGTGGEEAALFAADLARMYTRYAEGRGFGVTVLSSTESERGGYKEIVLEISGRGAYSR 179 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGG 234 +KFESG HRVQRVP TE+ GR+HTSA TVAVLPE ++ I D+RIDT RASG+GG Sbjct: 180 LKFESGGHRVQRVPETESQGRIHTSACTVAVLPEVDAVHEIHIQPSDLRIDTYRASGAGG 239 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN TDSA+RITH+PTG++V ++SQH+NR RAM +L+ARL ++ R++ + +A R Sbjct: 240 QHVNKTDSAIRITHLPTGLVVACQEDRSQHKNRARAMALLQARLLEMVREQQESSTAATR 299 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + IGSGDRSERIRTYNF QGRITDHRINLT+Y+LE VL G +D +I+PL+ HQA+++ Sbjct: 300 RSLIGSGDRSERIRTYNFPQGRITDHRINLTIYRLEAVLAGELDALIDPLIREHQAELLA 359 Query: 354 SAS 356 ++ Sbjct: 360 QSA 362 >gi|258512739|ref|YP_003186173.1| peptide chain release factor 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479465|gb|ACV59784.1| peptide chain release factor 1 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 356 Score = 273 bits (698), Expect = 2e-71, Method: Composition-based stats. Identities = 160/350 (45%), Positives = 231/350 (66%), Gaps = 5/350 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ + + KL +E A ++ + + + Q + Sbjct: 3 DRLASMEERYEHLSQLLCRPDVASDPEKLRSYAKEQAELAETVEVYREWKKVSQNIDEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R+ + E+ +++ LE+ + LLLPKD +DDK +EIRA GG Sbjct: 63 AMLQDKLDD-EMREFVRAELAELQRRREGLEHRLKILLLPKDPNDDKDVFVEIRAAAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L RMY+RYA WK E++ +S D GG++E+V + G+G ++++KFESG H Sbjct: 122 EAALFAAELLRMYQRYAEKHGWKTEIIDASYTDMGGFREVVMAVHGKGAYAKLKFESGTH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E++V+I +D+RIDT ++G GGQ VNTT SA Sbjct: 182 RVQRVPVTESGGRIHTSTATVAVLPEVEEVEVEIHEKDLRIDTFCSTGPGGQSVNTTQSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V EKSQ +N+ +AM+VLRARLY+ ++ E +A R+LQ+G+GDR Sbjct: 242 VRITHLPTGIVVSCQDEKSQLKNKEKAMRVLRARLYEKAQREQQEELAAKRRLQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 SERIRTYNF Q R+TDHRI LTL+KL+ VL G +D+II L+ QA+M+ Sbjct: 302 SERIRTYNFPQSRVTDHRIGLTLHKLDAVLDGELDEIIQALIVESQAEML 351 >gi|113971503|ref|YP_735296.1| peptide chain release factor 1 [Shewanella sp. MR-4] gi|114046304|ref|YP_736854.1| peptide chain release factor 1 [Shewanella sp. MR-7] gi|119361605|sp|Q0HFC8|RF1_SHESM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361606|sp|Q0HYK8|RF1_SHESR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|113886187|gb|ABI40239.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella sp. MR-4] gi|113887746|gb|ABI41797.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella sp. MR-7] Length = 363 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 242/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + + L++EY+ + +++ Y Q Sbjct: 1 MKESVIRKLEGLLERNEEVLALLGDASVIADQERFRALSKEYSQLEEVVAGFKAYQQALA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+R++AQ E+ A + E+ LE E+ LLLPKD +DD + +EIR Sbjct: 61 DLESAKEML--EEDDAEMREMAQEEIKAAKAELERLEAELQILLLPKDPNDDTNAFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++SS++ + GG+KEI+ +SG G + ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV V+ E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA ++ + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILGPLMQEHQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|193211744|ref|YP_001997697.1| peptide chain release factor 1 [Chlorobaculum parvum NCIB 8327] gi|238692678|sp|B3QRH7|RF1_CHLP8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|193085221|gb|ACF10497.1| peptide chain release factor 1 [Chlorobaculum parvum NCIB 8327] Length = 357 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 154/353 (43%), Positives = 225/353 (63%), Gaps = 6/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K+++ IE ++S+ + + KL +EY+ + I+ + KQ+ + Sbjct: 3 DKLQSIKDKYLTIEQQLSDPEVAADQNRFRKLNKEYSGLREIVRAYDNWRSAKQQLDETL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+R LA E +++ + ELE + LLLPKD D ++ I+EIRAGTGG Sbjct: 63 AMQKSEE-DPEMRALAAAEAEELQERLPELEQNLKILLLPKDEADTRNAIIEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGV 182 EA LF DL RMY+RYA + W + L S+ G KE+ +SG V+ +KFESGV Sbjct: 122 EAGLFAADLMRMYQRYAERQGWSCQTLDVSEGSVPGSLKEVSLEVSGHDVYGILKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I +D+++DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRKDDLQMDTFRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+P+GI+V E+SQ QNR RAMK+LR++LYD++ R+ R+ + +GD Sbjct: 242 AVRITHVPSGIVVACQEERSQLQNRERAMKMLRSKLYDIKITEQLQSRADLRRSMVATGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RS +IRTYNF Q R+TDHRI T + L V+QG ++ II+ L QA+ + + Sbjct: 302 RSAKIRTYNFPQSRVTDHRIGFTTHALPQVMQGELEPIIDALRMHDQAERLKA 354 >gi|78358024|ref|YP_389473.1| peptide chain release factor 1 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|119361534|sp|Q30X18|RF1_DESDG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78220429|gb|ABB39778.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 357 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 180/353 (50%), Positives = 247/353 (69%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ +F ++E ++S + Y KLT+ ++ + I+ +Y Q +E Sbjct: 4 KLEHLERQFEDLEQQLSSPEVFGDQERYRKLTKAHSDLKEIVEVFRVYRQLNEELAGNKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D SD EI+ +A+ E+ AIEK + E+E+E+ LLLPKD D+K+ +LEIRAGTGG E Sbjct: 64 MLRD--SDPEIQAMAREEIDAIEKRLPEMEHELKLLLLPKDPLDEKNVVLEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA W+VEVLSSS+ D GG+KEI+ ISG V+SRMKFESG HR Sbjct: 122 AALFAADLFRMYLRYAEDMGWRVEVLSSSETDSGGFKEIIGLISGDKVYSRMKFESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAV+PEA E+++D+ ED+R D R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPATETQGRIHTSAATVAVMPEADEVELDMKPEDLRFDVYRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG + EKSQH+N+ + +K+L +RL + + E + R+ +G+GDRS Sbjct: 242 RVTHIPTGITVACQDEKSQHKNKAKGLKILASRLLQAQEDKRHEELAEQRRSLVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RIRTYNF QGRITDHRINLTLYKL+ ++G I D+++ L+T Q + + + + Sbjct: 302 GRIRTYNFPQGRITDHRINLTLYKLDAFMEGQIGDMLDALITHAQTEALKAQA 354 >gi|325105445|ref|YP_004275099.1| bacterial peptide chain release factor 1 (bRF-1) [Pedobacter saltans DSM 12145] gi|324974293|gb|ADY53277.1| bacterial peptide chain release factor 1 (bRF-1) [Pedobacter saltans DSM 12145] Length = 358 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 153/356 (42%), Positives = 226/356 (63%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K R ++E +S + + +L +EY + I+ + Y Sbjct: 1 MLDKLEAIKLRRDDVERELSNPEATQDMKRFAQLNKEYKDLGLIVDEYYKYKNVVSNIAT 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+R++A+ E+ + E E+E +I +L+PKD D+K I+EIR GTG Sbjct: 61 NKDILA-NEKDQELREMAKEELDVLIPEKEEMEAKIRLMLVPKDPGDEKDAIVEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL+RMY RY + W+ EVL +D +GGYKE+V +SG V+ +K+ESG Sbjct: 120 GDEAAIFAGDLYRMYTRYCEGKGWRTEVLEVTDGTNGGYKEVVFKVSGEDVYGTLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+VAVLPEA E+DV+I DI + T R+ G+GGQ+VN + Sbjct: 180 VHRVQRVPDTETQGRVHTSAASVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNVNKVE 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + V++TH PTGI+V E+SQ NR RAM++LR++LY+ E + E ++ RK + +G Sbjct: 240 TKVQLTHKPTGIVVVCQVERSQLGNRERAMEMLRSKLYERELAKYNEEIASKRKTMVSTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+T+HRI LTLY L V+ G I +I++ L A A+ + + Sbjct: 300 DRSAKIRTYNYPQGRVTEHRIGLTLYNLPAVMNGEIQEILDALQFAENAEKLKEGA 355 >gi|88803826|ref|ZP_01119349.1| peptide chain release factor 1 [Polaribacter irgensii 23-P] gi|88780354|gb|EAR11536.1| peptide chain release factor 1 [Polaribacter irgensii 23-P] Length = 358 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 153/357 (42%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +I +K R+ E+ + + ++ Y +L +EY + ++ K Y ++ Sbjct: 1 MLDKIRIVKQRYDEVSDLIIQPATIMDQKRYAQLMKEYKDLGNVVEKGDEYQALIDNIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD+E+ ++A+ E+ I +LE EI +LL+P D +D K+ ++E+RAGTG Sbjct: 61 AKEILAE-GSDAEMNEMAKSEIDEANSRIPKLEEEIRFLLIPTDPEDSKNAVVELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y + WKV + S+ +GG+KEI ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYSKYCESKGWKVATVDYSEGTNGGFKEIQFEVNGADVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAAT V PEA E DV+I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATCMVFPEAEEFDVEINPKDVRIDFFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++ +KSQH+N+ +A KVLR+RLYD+E + E + R + SG Sbjct: 240 SAVRLTHVPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDMELAKKNAEDALKRGSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++QGR+TDHRI L+LY L ++ G I +I+ L+ A + + S ++ Sbjct: 300 DRSAKIRTYNYAQGRVTDHRIGLSLYDLPNIMNGDIQRVIDELMLAENTEKLKSLND 356 >gi|304410657|ref|ZP_07392275.1| peptide chain release factor 1 [Shewanella baltica OS183] gi|304351141|gb|EFM15541.1| peptide chain release factor 1 [Shewanella baltica OS183] Length = 363 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + D + L++EYA + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVMALLGDASVISDQDRFRALSKEYAQLEDVVAGFKAYQQAQV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D+E+R++AQ E+ A + ++ LE+E+ LLLPKD DDDK+ +EIR Sbjct: 61 DLDSAKEML--EEDDAEMREMAQEEMKAAKAKLEHLEDELQILLLPKDPDDDKNAFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++S ++ + GG+KE++ +SG GV+ ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQIEIMSCNEGEHGGFKEVIMKVSGDGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVLHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ +E ++ + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQALEDEKRRSAEETTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA + + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILLPLMQEHQADQLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|293395774|ref|ZP_06640056.1| peptide chain release factor RF1 [Serratia odorifera DSM 4582] gi|291421711|gb|EFE94958.1| peptide chain release factor RF1 [Serratia odorifera DSM 4582] Length = 361 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E++ + ++ + D + L+ EYA ++ + + Q + + Sbjct: 8 KLEALQERHEEVQALLGDAGVIADQDRFRALSREYAQLTDVSRCFLEWRQVQDDVATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + LE ++ LLLPKD DD++SC LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELKQARETTETLEQQLQLLLLPKDPDDERSCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VEV+S+++ + GGYKE++A +SG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEARRWRVEVMSANEGEHGGYKEVIAKVSGDGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPEVPEAELPEINAGDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLAALS 357 >gi|157964580|ref|YP_001499404.1| peptide chain release factor 1 [Rickettsia massiliae MTU5] gi|166977368|sp|A8F1S1|RF1_RICM5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157844356|gb|ABV84857.1| Peptide chain release factor RF-1 [Rickettsia massiliae MTU5] Length = 361 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 176/352 (50%), Positives = 250/352 (71%), Gaps = 2/352 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIQIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMI 352 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKL 352 >gi|241116888|ref|XP_002401657.1| protein releasing factor, putative [Ixodes scapularis] gi|215493201|gb|EEC02842.1| protein releasing factor, putative [Ixodes scapularis] Length = 358 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 248/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 4 MSFSDNLAKILDKYENLGKKLSSGIMGDEFVKASKEYAELKDVVAKIKEYNKAKSELEEA 63 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 64 NNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A I G+ VFS++KFESGV Sbjct: 124 EEAALFAAVLFNMYQRYAELKGWRFEILAISDMGIGGYKEASALIKGKDVFSKLKFESGV 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D++IDT RASG+GGQHVNTTDS Sbjct: 184 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLKIDTYRASGAGGQHVNTTDS 243 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPT I V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 244 AVRITHIPTSITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 303 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 304 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLSE 357 >gi|313676496|ref|YP_004054492.1| bacterial peptide chain release factor 1 (brf-1) [Marivirga tractuosa DSM 4126] gi|312943194|gb|ADR22384.1| bacterial peptide chain release factor 1 (bRF-1) [Marivirga tractuosa DSM 4126] Length = 355 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 151/354 (42%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ M + + + +L++EYA + ++ Y + + + Sbjct: 1 MLDRLERMKERFQEVGQLMVQPDAMADMKKFTELSKEYADLEKVVEVYDAYTKVLDDIKQ 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ ++ + E R++A++E ++ E LE E+ +L+PKD +D K+ +LEIRAGTG Sbjct: 61 AKNIL-ENEKEPEFREMAKMEWEELKPERDRLEEELKKMLIPKDPNDSKNAVLEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MY+R+ + VL + GGYKEI++T++G+ + +K+ESG Sbjct: 120 GDEAAIFAGDLFKMYQRFCDKNGLNLTVLDLTFGTAGGYKEIISTVTGKNAYGTLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPE +++V+I + D+R DT +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVAVLPEIDDVEVEIDMNDVRKDTYCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++V +KSQ +N +A++VLR+RLY++E + E A R+ + SG Sbjct: 240 SAVRLTHEPTGLVVTCQDQKSQIKNFDKALRVLRSRLYEIELAKQNEEVGAQRRSIVRSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS++IRTYN+ QGR+TDHRIN T++ L ++ G I+D+I L A A + Sbjct: 300 DRSDKIRTYNYPQGRVTDHRINYTVHNLPNIMNGEIEDLIENLQIAENASKLDE 353 >gi|306825267|ref|ZP_07458609.1| peptide chain release factor RF1 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304432703|gb|EFM35677.1| peptide chain release factor RF1 [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 359 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGHSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|258645288|ref|ZP_05732757.1| peptide chain release factor 1 [Dialister invisus DSM 15470] gi|260402638|gb|EEW96185.1| peptide chain release factor 1 [Dialister invisus DSM 15470] Length = 360 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 159/353 (45%), Positives = 248/353 (70%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ RF +E ++S+ + + + L++E++ + I++ Y + + ++ Sbjct: 5 KLDAMEARFRSLEDQLSDPSVISNQNKWRTLSKEHSDLGEIVTLYRSYKKVDKTCKEAVN 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D S S++ +LA+ E+ EK EL+ +I++LL+PKD +D K+ ILEIRAGTGG E Sbjct: 65 ILEDK-SQSDLHELAKEELKEAEKMKNELDKQIHFLLIPKDPNDGKNVILEIRAGTGGEE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DL +MY ++A + W+VE+ +++ D GG++E+ I G+ +S +KFESGVHR Sbjct: 124 AALFAADLLKMYLKFAENKGWRVELADANETDLGGFREVTCIIYGKNAYSLLKFESGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+PATE+ GRVHTSA TVAVLPE +D+DI +D+RID RASG+GGQH+N T SA+ Sbjct: 184 VQRIPATESQGRVHTSAVTVAVLPEVENVDIDINRDDLRIDVYRASGAGGQHINKTSSAI 243 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIP+G++V +E+SQ QN+ +A+++L+ARLYD + ++ +A+RK Q+GSGDRS Sbjct: 244 RITHIPSGMVVTCQNERSQRQNKEKALQILKARLYDRAVRESQDKTAADRKGQVGSGDRS 303 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF QGR+TDHR+N+++Y+L+ L G +D I++ L+ A K + Sbjct: 304 ERIRTYNFPQGRVTDHRVNVSVYQLDNFLNGNMDGILDVLIEADLTKRMKEGE 356 >gi|296533064|ref|ZP_06895708.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957] gi|296266608|gb|EFH12589.1| peptide chain release factor RF1 [Roseomonas cervicalis ATCC 49957] Length = 351 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 234/355 (65%), Gaps = 6/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ L R E+ + + L +E + + P+++++ ++ + Sbjct: 1 MKLPEKLDRLLYRADELRALLETAEG-AQVGALAKELSELEPLVAQVEALRAAERARDEA 59 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R+LA+ E A + LE E+ +LLPKD D S ILEIR GG Sbjct: 60 EALLA----DPEMRELAEAEYYAQRDAVPVLERELRLMLLPKDAADAGSAILEIRPAAGG 115 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA LF +LF Y++YAA R W+ VL +++ GG K VA + G+GVF+R+KFESGV Sbjct: 116 DEAGLFAAELFAAYQKYAAARGWRFGVLDYDESELGGIKGAVAEVEGQGVFARLKFESGV 175 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE GR+HTS TVAVLP+A ++DV I D+RIDT RASG+GGQHVN TDS Sbjct: 176 HRVQRVPATETQGRIHTSTVTVAVLPQAEDVDVQINESDLRIDTYRASGAGGQHVNKTDS 235 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTG +V E+SQH+NR +AMKVLRARLY+ +R + RSA+R+ Q+G+GD Sbjct: 236 AVRITHIPTGTVVAMQEERSQHKNRAKAMKVLRARLYEAQRSQAVASRSADRRAQVGTGD 295 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRI LTL+K++ V+QG +DDII+ L+ +A + + Sbjct: 296 RSERIRTYNFPQGRVTDHRIGLTLHKIDRVMQGEMDDIIDALIAEDEAARLAAEG 350 >gi|314934187|ref|ZP_07841548.1| peptide chain release factor 1 [Staphylococcus caprae C87] gi|313653092|gb|EFS16853.1| peptide chain release factor 1 [Staphylococcus caprae C87] Length = 358 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E +D+ Sbjct: 3 DQLDIVEERYEQLNEMLSDPDVVNDSDKLRKYSKEQADLQKTVEVYRSYKSKKEELEDIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E D+ + E +++ E+ E+E E+ LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLKET-SDKEEVDMLKEESASLKAELPEMEEELKILLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEAYGFKTEIVEASESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ER+RTYN+ Q R+TDHRI LTL KL +++G +D+II+ L + Q + + + Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLGQIMEGNLDEIIDALTLSEQTEKLKELN 354 >gi|253990004|ref|YP_003041360.1| peptide chain release factor 1 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781454|emb|CAQ84617.1| peptide chain release factor rf-1 [Photorhabdus asymbiotica] Length = 360 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 245/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+ + ++ + + L+ EYA ++ + + + + + + Sbjct: 8 KLEALQERHEEVLAHLGDADVIADQERFRALSREYAQLTDVTTCFKTWRTVQDDLKAAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEEIKDAKARNEELEQQLQLLLLPKDPDDERNCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WK+EV+S++D + GGYKEI+A +SG V+ +KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWKIEVMSANDGEHGGYKEIIAKVSGEQVYGHLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAVLPE E + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVLPEIPEAELPEISPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLAARIRAAEVRKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVNEYQADQLSALSE 358 >gi|239947714|ref|ZP_04699467.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes scapularis] gi|239921990|gb|EER22014.1| peptide chain release factor 1 [Rickettsia endosymbiont of Ixodes scapularis] Length = 355 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 248/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MSFSDNLAKILDKYENLGKKLSSGIMGDEFVKASKEYAELKDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIHTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDMGIGGYKEASALIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D++IDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLKIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPT I V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTSITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLSE 354 >gi|308271577|emb|CBX28185.1| Peptide chain release factor 1 [uncultured Desulfobacterium sp.] Length = 363 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 189/360 (52%), Positives = 253/360 (70%), Gaps = 6/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + ++I + RF E+E+ +S+ ++ +AY K E++A+S I++ Y + Sbjct: 1 MEGIMFEKIEGAEVRFMELEMLLSDPDTIRDREAYQKYVREHSALSKIVAIYRSYKNINE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ +++ N D EI++LA+ E+ + + +LE ++ LL+PKD D+K+ ILEIR Sbjct: 61 QIEESISLLK--NEDPEIKELARDEIEELNLKKEDLEKQLRLLLIPKDEKDEKNVILEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DLFRMY RYA R WKVEVL+ S GG KEIVA I G+G +S K Sbjct: 119 AGTGGDEAALFATDLFRMYSRYAENRNWKVEVLTHSPTGVGGLKEIVALIQGKGAYSSFK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESG HRVQRVP TEA GR+HTSA TVAVLPEA E+++DI +I++D R++G GGQ V Sbjct: 179 YESGTHRVQRVPVTEAQGRIHTSAVTVAVLPEAEEVELDIDPGEIKVDVYRSTGPGGQSV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTG++V EKSQ +N+ +AMKVLRARL D +RSA RK Q Sbjct: 239 NTTDSAVRITHLPTGLVVTCQDEKSQFKNKSKAMKVLRARLLDNITMEQNQKRSAERKHQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 IGSGDRSERIRTYNF Q R+TDHRI LTLYKLEY+L+G ID+II+ L + +QA+ + A Sbjct: 299 IGSGDRSERIRTYNFPQSRVTDHRIGLTLYKLEYILEGNIDEIISELTSHYQAQALQHAE 358 >gi|262375291|ref|ZP_06068524.1| peptide chain release factor 1 [Acinetobacter lwoffii SH145] gi|262309545|gb|EEY90675.1| peptide chain release factor 1 [Acinetobacter lwoffii SH145] Length = 362 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 243/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + +L+ E+ ++ I + + Y Q ++ Sbjct: 1 MKESLRLRLDQLSDRHEELTALLADVEVISDNKRFRQLSREHNDLTEITNVWTKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD + +++AQ E+ + I LE ++N L++PKD +D S LEIR Sbjct: 61 DIETAQAML----SDPDFKEMAQEEIKENKALIESLEADLNILMIPKDPNDANSAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++E+LS ++ + GGYKE++ I+G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAENQGWRIEILSENEGEHGGYKEVICLINGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + VDI D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTSVDINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 VNKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAVMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|332360425|gb|EGJ38236.1| peptide chain release factor RF1 [Streptococcus sanguinis SK355] Length = 359 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVAAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKNAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|325929457|ref|ZP_08190585.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas perforans 91-118] gi|325540232|gb|EGD11846.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas perforans 91-118] Length = 361 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVGNNDTFRTLSRELSQLEPVAVALEEEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + +L+ ++ LL+P+D DD + LE+R Sbjct: 61 DLATAEAL----RNDPEMRELAEEEIAAAQARLEQLDAQLASLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEITINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L D ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLLDAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIGRLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|257421856|ref|ZP_05598846.1| peptide chain release factor [Enterococcus faecalis X98] gi|257163680|gb|EEU93640.1| peptide chain release factor [Enterococcus faecalis X98] gi|315155439|gb|EFT99455.1| peptide chain release factor 1 [Enterococcus faecalis TX0043] Length = 357 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 166/353 (47%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y Q + D Sbjct: 3 DQLQSIEDRYEELGELLSDPAIISDTKRFMELSKEEANTRETVEVYRRYKQVVEGISDAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D+E+ ++A+ E+ ++KE LE+ I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLSE-NLDAEMAEMAKEELSDLKKEKEVLEDRIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WK EVL ++ GGYKE++ ISG VFS++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAEAQGWKAEVLEANVTGIGGYKEVIMMISGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++++ +DIR+D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIELADKDIRVDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALVLYDQTSKLEEM 354 >gi|296116158|ref|ZP_06834776.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC 23769] gi|295977264|gb|EFG84024.1| peptide chain release factor 1 [Gluconacetobacter hansenii ATCC 23769] Length = 353 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 174/349 (49%), Positives = 246/349 (70%), Gaps = 5/349 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ + R E++ ++E S A+ + + E+A + PI++K++ +Q QD + Sbjct: 5 DERLDRIVARGEELQALLAEGLSGAAFSQASREFAELDPIVAKVNALRATEQAVQDTQAL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+R LA+ E+ + + I ELE++I +LP+D DD+S ILEIR GG EA Sbjct: 65 L----DDPEMRGLAESELAELRRRIPELEHDIRIAMLPRDEADDRSAILEIRPAAGGDEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF G +F Y+RYA R W+ E+L +++ GG +E +A+I+GRGVF+R+K+ESGVHRV Sbjct: 121 ALFAGQMFGAYQRYADQRGWRFEILEYDESELGGLREGIASITGRGVFARLKYESGVHRV 180 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATE+ GR+HTS TVAVLPEA E+DV+I D+RID RASG+GGQHVN T+SAVR Sbjct: 181 QRVPATESQGRIHTSTVTVAVLPEAEEVDVEINDNDLRIDVYRASGAGGQHVNKTESAVR 240 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+P+GI+V EKSQH+NR +AMK+LRARLY+ R R+A+R+ Q+G+GDRSE Sbjct: 241 ITHMPSGIVVAMQEEKSQHKNRAKAMKILRARLYERNRAAAHETRAADRRSQVGTGDRSE 300 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 RIRTYNF QGR+TDHRI LTLYK++ V+ G D+ ++ L QA ++ Sbjct: 301 RIRTYNFPQGRVTDHRIGLTLYKIDKVMGGEFDEFVDALTQEEQAALLA 349 >gi|238763000|ref|ZP_04623967.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638] gi|238698758|gb|EEP91508.1| Peptide chain release factor 1 [Yersinia kristensenii ATCC 33638] Length = 360 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAHLGDANVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMMLE----DPEMREMAQDELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|152989856|ref|YP_001355578.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2] gi|166223578|sp|A6Q162|RF1_NITSB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151421717|dbj|BAF69221.1| peptide chain release factor 1 [Nitratiruptor sp. SB155-2] Length = 354 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 176/357 (49%), Positives = 245/357 (68%), Gaps = 8/357 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ R+ EI +S + L++E + I PI+ K Y + + Sbjct: 1 MLKEKLHPFIQRYNEINELLSSPEITQDIKKMTALSKEQSEIEPIVEKAKEYMNILEAIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++I D E+ +LA+ E+ +E + +LE EI LL+ KD +D+K LEIRAGT Sbjct: 61 ENRSLIE----DEELGELAKEELKELEPKKEQLEEEIKVLLISKDPNDEKDIYLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF+ Y RYA + W+VE++SSS++D GGYKEI+A I G+GV+SR+K+E+ Sbjct: 117 GGEEAALFASDLFKAYARYAEKKGWRVEIVSSSESDSGGYKEIIAKIKGQGVYSRLKYEA 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE ++DV+I D++ID R+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRIHTSAVTVAIMPEVDDVDVEINPNDLKIDVYRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V EKSQH+N+ +A+K+L+AR+++ + + +RK Q+GS Sbjct: 237 DSAVRITHIPTGIVVAMQDEKSQHKNKEKALKILKARIFEKRMREQQEALAKDRKEQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q R+TDHRI LTLYKLE V+QG +D II PL+ +QA+ I A Sbjct: 297 GDRSERIRTYNFPQNRVTDHRIGLTLYKLEEVMQGDLDQIIEPLIAHYQAQKIQEAG 353 >gi|51596331|ref|YP_070522.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP 32953] gi|81639458|sp|Q66AX5|RF1_YERPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|51589613|emb|CAH21243.1| peptide chain release factor RF-1 [Yersinia pseudotuberculosis IP 32953] Length = 360 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDLEMREMAQEELKIAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A ISG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEGEHGGYKEVIAKISGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAELPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|322387784|ref|ZP_08061393.1| peptide chain release factor RF1 [Streptococcus infantis ATCC 700779] gi|321141651|gb|EFX37147.1| peptide chain release factor RF1 [Streptococcus infantis ATCC 700779] Length = 359 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|261366981|ref|ZP_05979864.1| peptide chain release factor 1 [Subdoligranulum variabile DSM 15176] gi|282571098|gb|EFB76633.1| peptide chain release factor 1 [Subdoligranulum variabile DSM 15176] Length = 359 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 153/359 (42%), Positives = 239/359 (66%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 Q+ +++ R+ E+ RMS + D Y ++ ++Y ++P++ + Y +Q++ Sbjct: 1 MTEFLQLHEVERRYEELAYRMSAPDAAAQPDVYARMMKDYKELTPLVEEYRRYTSLQQQQ 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + ++ +D + + Q E+ I + + + E + LLLPKD DD+K+ ILEIRAG Sbjct: 61 TETNELVQQE-TDPAFKAMVQQELCEIARNLAQSEENLRLLLLPKDADDEKNVILEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF L+RMY YA+ R W + +S+++ + GG KE+V ++ G V+SR+KFE Sbjct: 120 AGGEEAALFAHSLWRMYTMYASKRGWSCQTISANETELGGVKEVVFSVEGADVYSRLKFE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE GR+HTS TVAV+PEA E+++++ +D+RIDT R+SG+GGQH+N Sbjct: 180 SGVHRVQRVPETETQGRIHTSTVTVAVMPEAEEVELELDPKDLRIDTFRSSGAGGQHINK 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SA+R+TH+PTG++V ++SQ +N+ RA+ VLR+RL +++ + R+ Q+G Sbjct: 240 TSSAIRVTHLPTGMVVECQDQRSQRENKERALTVLRSRLLQQKQQAYDEAYNEKRQSQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSE+IRTYNF Q R+TDHRI LTL L+ VL G +D ++ PL+ A + + + SE Sbjct: 300 TGDRSEKIRTYNFPQDRVTDHRIGLTLRNLQGVLDGDLDRVLEPLILADREEKLKQHSE 358 >gi|239637411|ref|ZP_04678393.1| peptide chain release factor 1 [Staphylococcus warneri L37603] gi|239597011|gb|EEQ79526.1| peptide chain release factor 1 [Staphylococcus warneri L37603] Length = 358 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 247/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLEIVEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVDVYRSYKSKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E ++ + E +++ E+ E+E ++ LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLNET-SDKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ +S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEAHNFKTEIVEASESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +L+G +D+II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLSQILEGNLDEIIDALTLSEQTDKLKELN 354 >gi|148543687|ref|YP_001271057.1| peptide chain release factor 1 [Lactobacillus reuteri DSM 20016] gi|227363334|ref|ZP_03847463.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3] gi|227544508|ref|ZP_03974557.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A] gi|300909304|ref|ZP_07126765.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112] gi|325682058|ref|ZP_08161576.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A] gi|148530721|gb|ABQ82720.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus reuteri DSM 20016] gi|227071641|gb|EEI09935.1| peptide chain release factor 1 [Lactobacillus reuteri MM2-3] gi|227185531|gb|EEI65602.1| peptide chain release factor 1 [Lactobacillus reuteri CF48-3A] gi|300893169|gb|EFK86528.1| peptide chain release factor RF1 [Lactobacillus reuteri SD2112] gi|324978702|gb|EGC15651.1| peptide chain release factor RF1 [Lactobacillus reuteri MM4-1A] Length = 362 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 158/353 (44%), Positives = 237/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Q D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNQYKKVTQTISDDE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D ++ L + E+ +E +LE E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 ELLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + WKVEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQHVN T SA Sbjct: 187 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ + RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q + + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLDEIIEALIVADQTQKLEQL 359 >gi|116749148|ref|YP_845835.1| peptide chain release factor 1 [Syntrophobacter fumaroxidans MPOB] gi|166977370|sp|A0LIZ8|RF1_SYNFM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116698212|gb|ABK17400.1| bacterial peptide chain release factor 1 (bRF-1) [Syntrophobacter fumaroxidans MPOB] Length = 355 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 178/350 (50%), Positives = 248/350 (70%), Gaps = 5/350 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +F ++E +S + Y K+ E+A I+PI+ +Y ++ D Sbjct: 3 DRLESVAQKFRKLEEDLSNPELLANQKEYQKIAREHAEIAPIVEAYGLYKGLHRQLLDNQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R+L + E+ ++++I + EN + +L P+D +DDK+ ILEIRAGTGG Sbjct: 63 QLL-EQETDPEMRELFRQEIAELKRQIEDTENGLKLMLAPRDPNDDKNVILEIRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DLFRMY RYA LR+WKVE+L S GG KE++A ++G+G +SR+KFE GVH Sbjct: 122 EAALFVSDLFRMYTRYAELRRWKVEILDSHQTGIGGLKEVIAAVNGQGAYSRLKFERGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSA TVAVLPEA E+DV I D+R+D R+SG GGQ VNTTDSA Sbjct: 182 RVQRVPVTESQGRIHTSAVTVAVLPEAEEVDVYIDPNDLRVDVFRSSGPGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIP+G++V EKSQH+N+ +A+KVLRARL D + + +RK Q+G+GDR Sbjct: 242 VRVTHIPSGLVVICQDEKSQHKNKAKALKVLRARLLDQMQSEQEARIARDRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 SERIRTYNF Q R++DHRINLTLYKL+ +L G +D+II+PL T QA+ + Sbjct: 302 SERIRTYNFPQNRVSDHRINLTLYKLDIILGGALDEIIDPLSTHFQAEAL 351 >gi|332701398|ref|ZP_08421486.1| Peptide chain release factor 1 [Desulfovibrio africanus str. Walvis Bay] gi|332551547|gb|EGJ48591.1| Peptide chain release factor 1 [Desulfovibrio africanus str. Walvis Bay] Length = 357 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 176/353 (49%), Positives = 248/353 (70%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ +FA++E ++S + Y KLT+ A ++ +++ + + ++ +D Sbjct: 4 KLESLERQFADLESQLSAPDIFNDQERYKKLTKARADLAQVVACFQEFKKLSRDLEDNRE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D EIR +A+ E+ +I++ + LE ++ LLLPKD D+K ILEIRAGTGG E Sbjct: 64 MLADA--DPEIRAMAESEIASIKQALPRLEEKLQLLLLPKDPLDEKDVILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF DLFRMY RYA WKVE+LS ++ GG+KE++A+ISG V+SR+K+ESG+HR Sbjct: 122 ASLFAADLFRMYMRYAERVGWKVEMLSEHESATGGFKEVIASISGERVYSRLKYESGIHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSA TVAVLPEA E+D+DI ++RID RASG+GGQHVN T+SAV Sbjct: 182 VQRVPATETQGRIHTSAVTVAVLPEAEEVDLDIDPTELRIDVYRASGAGGQHVNKTESAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT +V EKSQH+N+ +AMKVLR+R+ + +E A R+L +GSGDRS Sbjct: 242 RITHLPTNTVVTCQDEKSQHKNKAKAMKVLRSRILQSMQAARKDEEDAARRLLVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RIRTYNF QGRITDHRINLTLY L V++G +DD++ L+ +Q + + + Sbjct: 302 GRIRTYNFPQGRITDHRINLTLYSLSAVMEGALDDLVEALIGHYQTEALKQQA 354 >gi|270292697|ref|ZP_06198908.1| peptide chain release factor 1 [Streptococcus sp. M143] gi|270278676|gb|EFA24522.1| peptide chain release factor 1 [Streptococcus sp. M143] Length = 359 Score = 273 bits (697), Expect = 3e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 IDAEEMIKESGGDADLEEMAKQELKDAKSEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|125975076|ref|YP_001038986.1| peptide chain release factor 1 [Clostridium thermocellum ATCC 27405] gi|256003270|ref|ZP_05428262.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360] gi|281418506|ref|ZP_06249525.1| peptide chain release factor 1 [Clostridium thermocellum JW20] gi|166223552|sp|A3DIL4|RF1_CLOTH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|125715301|gb|ABN53793.1| bacterial peptide chain release factor 1 (bRF-1) [Clostridium thermocellum ATCC 27405] gi|255992961|gb|EEU03051.1| peptide chain release factor 1 [Clostridium thermocellum DSM 2360] gi|281407590|gb|EFB37849.1| peptide chain release factor 1 [Clostridium thermocellum JW20] gi|316939241|gb|ADU73275.1| peptide chain release factor 1 [Clostridium thermocellum DSM 1313] Length = 360 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 182/355 (51%), Positives = 257/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +NR+ EI R+S+ + D Y KL +E+A + +++K + Y + +E D Sbjct: 3 EKFQAAENRYDEINHRLSDPAVIANQDEYKKLMKEHAELEVLVTKYNEYKKLTKEIADAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E R++ + E+ ++++ L+ E+ LLLPKD +D+++ I+EIR G GG Sbjct: 63 EMLNEK-LDKEFREMVETELKEAQEKLEVLKKEMKILLLPKDPNDERNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY RYA WK E+L S+ + GG+KE+V +I G G +SR+KFESGVH Sbjct: 122 EAALFAGDLFRMYTRYAERNGWKTEILDSNPTEIGGFKEVVFSIEGNGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA+GRVHTS TVAVLPEA EIDV+I D+RIDT RASG+GGQH+N TDSA Sbjct: 182 RVQRVPVTEANGRVHTSTVTVAVLPEAEEIDVEINPNDLRIDTYRASGAGGQHINKTDSA 241 Query: 244 VRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTG++V ++SQH+N+ +AMKVLR++LY++ R++ NE + RK Q+G+GDR Sbjct: 242 IRITHLPTGLVVCCQDQRSQHKNKEKAMKVLRSKLYEMAREQQHNEIAQERKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGR+TDHRI LTLYK++ +L G ID+II+ L+T QA + + +E Sbjct: 302 SERIRTYNFPQGRVTDHRIGLTLYKIDDILDGDIDEIIDALITTDQASKLANGAE 356 >gi|163815255|ref|ZP_02206632.1| hypothetical protein COPEUT_01415 [Coprococcus eutactus ATCC 27759] gi|158449450|gb|EDP26445.1| hypothetical protein COPEUT_01415 [Coprococcus eutactus ATCC 27759] Length = 358 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 251/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +L ++ I ++++ V + + KL +E + + PI+ K Y K +D Sbjct: 3 DRLEELVDKLDTINNQLTDPDVVTDQNKFRKLMKEQSDLVPIVDKYKEYKDAKTTIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 I + +D E+R++A+ E+ + + +E E+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 E-ILEEENDEELREMAKEEMNDAKSRLETIEQELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY++Y KWKVE++S ++N GG+KE V I+G G +S+MK+ESGVH Sbjct: 122 EAALFAYEIYRMYQKYVDQFKWKVELMSVNENGIGGFKEAVFMITGDGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS TVAV+PEA E+DV+I DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRIPKTESGGRIHTSTVTVAVMPEAEEVDVEINDNDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR++LYD+E ++ + +A+RK QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQHDAEAADRKSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF +GR+TDHRI LTLYKL+ ++ G ++++I+ L+ A Q + +E Sbjct: 302 SEKIRTYNFPEGRVTDHRIKLTLYKLDQIMNGDLNELIDSLIAADQTAKLAQVNE 356 >gi|268316168|ref|YP_003289887.1| peptide chain release factor 1 [Rhodothermus marinus DSM 4252] gi|262333702|gb|ACY47499.1| peptide chain release factor 1 [Rhodothermus marinus DSM 4252] Length = 360 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 168/359 (46%), Positives = 243/359 (67%), Gaps = 7/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEE 59 + + + ++K R+ E+ +S+ +L E+A++ ++ I Y++ E+ Sbjct: 1 MIPKEPLEEIKRRYEEVTQALSDPEVAADPKRLAELGREHASLRAVVEAIEAYERLLAEQ 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L +I SD E+ +A+ E+ +E+ + +E ++ L+P+D D ++ I+EIRAG Sbjct: 61 ESLRELIR-TESDPELIRMARHELEELEERLPAVEEDLRLRLIPQDEMDRRNAIVEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY R+A + WK+EVL +S GG+KEI+ ++ G V+ MK+E Sbjct: 120 TGGDEAALFAGDLFRMYSRFAERKGWKLEVLDASPGTVGGFKEIIFSLKGPDVYGTMKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVPATE+ GR+HTSAA+V VLPEA E+DV+I ED+RID RASG GGQHVN Sbjct: 180 SGVHRVQRVPATESQGRIHTSAASVVVLPEAEEVDVEIRPEDLRIDVFRASGPGGQHVNR 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITH+PTGI+V EKSQHQNR +A+++LRARLY++E++R ER A R+ I Sbjct: 240 TESAVRITHVPTGIVVACQDEKSQHQNREKALRILRARLYELEQERQRAERDAVRRASIK 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GDRS +IRTYNF Q R+TDHR+ L L +++G +D++IN L TA A+ + Sbjct: 300 TGDRSAKIRTYNFPQDRVTDHRLEGDLKNWPLHRIIEGELDELINALRTAEHAERLAQL 358 >gi|328946334|gb|EGG40478.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1087] gi|332361225|gb|EGJ39029.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1056] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTNRFMELSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|306829484|ref|ZP_07462674.1| peptide chain release factor RF1 [Streptococcus mitis ATCC 6249] gi|307708639|ref|ZP_07645102.1| peptide chain release factor 1 [Streptococcus mitis NCTC 12261] gi|315613125|ref|ZP_07888035.1| peptide chain release factor RF1 [Streptococcus sanguinis ATCC 49296] gi|322376710|ref|ZP_08051203.1| peptide chain release factor 1 [Streptococcus sp. M334] gi|304428570|gb|EFM31660.1| peptide chain release factor RF1 [Streptococcus mitis ATCC 6249] gi|307615213|gb|EFN94423.1| peptide chain release factor 1 [Streptococcus mitis NCTC 12261] gi|315314687|gb|EFU62729.1| peptide chain release factor RF1 [Streptococcus sanguinis ATCC 49296] gi|321282517|gb|EFX59524.1| peptide chain release factor 1 [Streptococcus sp. M334] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|289450407|ref|YP_003475653.1| peptide chain release factor 1 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184954|gb|ADC91379.1| peptide chain release factor 1 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 366 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + Q+ + NR+ E+ +S+ + D Y+++ +E A ++ I+ I Y KK E Sbjct: 1 MEISQLEAVLNRYEELSAGLSDPSLLADRDRYLRVVKEQAGLTEIVGVIRDYIAKKDELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + D E+R L + E+ ++ ++ ELE ++ LLLPKD D+K+ LEIR G Sbjct: 61 ENLAMLQET-DDEEMRLLLKEEIRDLKVKLPELEEKLQILLLPKDPRDEKNVYLEIRGGA 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF LFRMY+ YA + +KVE++ + + GG KE+V +I G G +S K+ES Sbjct: 120 GGEEAALFAEVLFRMYQSYAESKHFKVEIVEWNATELGGLKEVVCSIQGSGAYSLFKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTS TVAVLPE E+DV+I DI IDT R+SG+GGQHVN T Sbjct: 180 GVHRVQRVPVTESGGRIHTSTVTVAVLPEVDEVDVEILPGDITIDTYRSSGAGGQHVNKT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSA+RITHIPTGI+V ++SQ++N+ RAM VLRA+LY+ ++ A + R+ Q+G+ Sbjct: 240 DSAIRITHIPTGIVVTCQDQRSQYKNKDRAMAVLRAKLYERAQEERAGSIAEARRDQVGT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 GDRSERIRTYN+ QGR+TDHRI LT+YK++ +L G +D II PL+ A + K++ Sbjct: 300 GDRSERIRTYNYPQGRVTDHRIGLTVYKIDEILAGNLDLIIEPLMRAERTKLLA 353 >gi|255693621|ref|ZP_05417296.1| peptide chain release factor 1 [Bacteroides finegoldii DSM 17565] gi|260620597|gb|EEX43468.1| peptide chain release factor 1 [Bacteroides finegoldii DSM 17565] Length = 370 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEISTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYIQLLGNIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ SD++IR++A+ E+ ++ + LE EI +L+P D D K+ ILEIR G GG Sbjct: 69 NILA-TESDTDIREMAKEEMDLSQERLPVLEEEIKLMLVPADPQDSKNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y ++ WK+EV ++++ GGYKEIV +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKYCEVKGWKLEVSNANEGTAGGYKEIVCSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGVSEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|309800291|ref|ZP_07694464.1| peptide chain release factor 1 [Streptococcus infantis SK1302] gi|308116075|gb|EFO53578.1| peptide chain release factor 1 [Streptococcus infantis SK1302] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 IDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|332360650|gb|EGJ38459.1| peptide chain release factor RF1 [Streptococcus sanguinis SK49] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKSEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|117919221|ref|YP_868413.1| peptide chain release factor 1 [Shewanella sp. ANA-3] gi|166223605|sp|A0KT88|RF1_SHESA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|117611553|gb|ABK47007.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella sp. ANA-3] Length = 363 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 243/362 (67%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ + ++ + + L++EY+ + +++ Y Q + Sbjct: 1 MKESVIRKLEGLLERNEEVLALLGDASVIADQERFRALSKEYSQLEEVVAGFKAYQQAQA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D+E+R++AQ E+ A + E+ LE E+ LLLPKD +DD + +EIR Sbjct: 61 DLESAKEML--EEDDAEMREMAQEEIKAAKAELERLEAELQILLLPKDPNDDTNAFIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA +W++E++SS++ + GG+KEI+ +SG G + ++K Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEANRWQLEIMSSNEGEHGGFKEIIVKVSGEGAYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV V+ E E + D+++DT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSAVTVVVMHEVPEAEAISINPADLKVDTFRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V ++SQH+NR +AM VL AR+ VE ++ + + R+ Sbjct: 239 VNKTDSAIRITHIPTGIVVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSER+RTYNF QGR+++HRINLTLY+L V++G +D I+ PL+ HQA ++ + Sbjct: 299 LVASGDRSERVRTYNFPQGRVSEHRINLTLYRLNEVMEGDLDAILGPLMQEHQADLLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|15892685|ref|NP_360399.1| peptide chain release factor 1 [Rickettsia conorii str. Malish 7] gi|20139335|sp|Q92HK9|RF1_RICCN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|15619858|gb|AAL03300.1| peptide chain release factor RF-1 [Rickettsia conorii str. Malish 7] Length = 355 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 249/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWHFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLLE 354 >gi|323351595|ref|ZP_08087249.1| peptide chain release factor RF1 [Streptococcus sanguinis VMC66] gi|322122081|gb|EFX93807.1| peptide chain release factor RF1 [Streptococcus sanguinis VMC66] gi|324992933|gb|EGC24853.1| peptide chain release factor RF1 [Streptococcus sanguinis SK405] gi|325687437|gb|EGD29458.1| peptide chain release factor RF1 [Streptococcus sanguinis SK72] gi|325694524|gb|EGD36433.1| peptide chain release factor RF1 [Streptococcus sanguinis SK150] gi|325696481|gb|EGD38371.1| peptide chain release factor RF1 [Streptococcus sanguinis SK160] gi|327462229|gb|EGF08556.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1] gi|327470059|gb|EGF15523.1| peptide chain release factor RF1 [Streptococcus sanguinis SK330] gi|327474249|gb|EGF19656.1| peptide chain release factor RF1 [Streptococcus sanguinis SK408] gi|327489584|gb|EGF21376.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1058] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|311033344|ref|ZP_07711434.1| peptide chain release factor 1 [Bacillus sp. m3-13] Length = 356 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 238/354 (67%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ +S+ + KL ++E + I + Y K++ D Sbjct: 3 DRLQAVEMRYEKLTELLSDPEVISDTKKLREYSKEQSDIQETVEAYREYKAVKEQLDDAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++R++ + E+ +E++ L + ++ LLLPKD +DDK+ I+EIR GG Sbjct: 63 AMLEDK-LDADMREMVKEEIAELEEQQENLADRLHILLLPKDPNDDKNVIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK EV+ ++ GGYKEI+ I+G+G +S++KFE+G H Sbjct: 122 EAALFAGDLYRMYSRYAEAQGWKTEVMEAASTGVGGYKEIIFMITGKGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA E++++I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEEVEIEIHDKDIRVDTFASSGPGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPT +V EKSQ +N+ +AMKVLRAR+YD ++ + E ANRK +G+GDR Sbjct: 242 VRLTHIPTNTVVSCQDEKSQIKNKEKAMKVLRARVYDKFQREVQAEYDANRKQAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LT+ KL+ +LQG + ++I+ L+ QA + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLQEVIDALIMEDQALRMEQME 355 >gi|22126175|ref|NP_669598.1| peptide chain release factor 1 [Yersinia pestis KIM 10] gi|45441669|ref|NP_993208.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus str. 91001] gi|108807397|ref|YP_651313.1| peptide chain release factor 1 [Yersinia pestis Antiqua] gi|108811662|ref|YP_647429.1| peptide chain release factor 1 [Yersinia pestis Nepal516] gi|145598396|ref|YP_001162472.1| peptide chain release factor 1 [Yersinia pestis Pestoides F] gi|149366051|ref|ZP_01888086.1| peptide chain release factor 1 [Yersinia pestis CA88-4125] gi|153947351|ref|YP_001401039.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP 31758] gi|162421626|ref|YP_001606878.1| peptide chain release factor 1 [Yersinia pestis Angola] gi|165926418|ref|ZP_02222250.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|165938830|ref|ZP_02227384.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. IP275] gi|166009117|ref|ZP_02230015.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166210440|ref|ZP_02236475.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|167401373|ref|ZP_02306870.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420420|ref|ZP_02312173.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424382|ref|ZP_02316135.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|170024410|ref|YP_001720915.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII] gi|186895374|ref|YP_001872486.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+] gi|218929128|ref|YP_002347003.1| peptide chain release factor 1 [Yersinia pestis CO92] gi|229894728|ref|ZP_04509908.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A] gi|229897428|ref|ZP_04512584.1| peptide chain release factor RF-1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898071|ref|ZP_04513222.1| peptide chain release factor RF-1 [Yersinia pestis biovar Orientalis str. India 195] gi|229901940|ref|ZP_04517061.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516] gi|270490877|ref|ZP_06207951.1| peptide chain release factor 1 [Yersinia pestis KIM D27] gi|294503912|ref|YP_003567974.1| peptide chain release factor 1 [Yersinia pestis Z176003] gi|20139332|sp|Q8ZEX8|RF1_YERPE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361639|sp|Q1C854|RF1_YERPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361640|sp|Q1CJK1|RF1_YERPN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223619|sp|A4TJN7|RF1_YERPP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166977371|sp|A7FIG1|RF1_YERP3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238687250|sp|A9QZ08|RF1_YERPG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238688460|sp|B1JM85|RF1_YERPY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238691366|sp|B2K2Z0|RF1_YERPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21959139|gb|AAM85849.1|AE013831_12 peptide chain release factor RF-1 [Yersinia pestis KIM 10] gi|45436531|gb|AAS62085.1| peptide chain release factor 1 [Yersinia pestis biovar Microtus str. 91001] gi|108775310|gb|ABG17829.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis Nepal516] gi|108779310|gb|ABG13368.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis Antiqua] gi|115347739|emb|CAL20654.1| peptide chain release factor 1 [Yersinia pestis CO92] gi|145210092|gb|ABP39499.1| bacterial peptide chain release factor 1 (bRF-1) [Yersinia pestis Pestoides F] gi|149292464|gb|EDM42538.1| peptide chain release factor 1 [Yersinia pestis CA88-4125] gi|152958846|gb|ABS46307.1| peptide chain release factor 1 [Yersinia pseudotuberculosis IP 31758] gi|162354441|gb|ABX88389.1| peptide chain release factor 1 [Yersinia pestis Angola] gi|165913193|gb|EDR31816.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. IP275] gi|165921639|gb|EDR38836.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. F1991016] gi|165991672|gb|EDR43973.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. E1979001] gi|166207620|gb|EDR52100.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. B42003004] gi|166962115|gb|EDR58136.1| peptide chain release factor 1 [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049069|gb|EDR60477.1| peptide chain release factor 1 [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056264|gb|EDR66033.1| peptide chain release factor 1 [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750944|gb|ACA68462.1| peptide chain release factor 1 [Yersinia pseudotuberculosis YPIII] gi|186698400|gb|ACC89029.1| peptide chain release factor 1 [Yersinia pseudotuberculosis PB1/+] gi|229680836|gb|EEO76931.1| peptide chain release factor RF-1 [Yersinia pestis Nepal516] gi|229689112|gb|EEO81177.1| peptide chain release factor RF-1 [Yersinia pestis biovar Orientalis str. India 195] gi|229693765|gb|EEO83814.1| peptide chain release factor RF-1 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702201|gb|EEO90220.1| peptide chain release factor RF-1 [Yersinia pestis Pestoides A] gi|262361967|gb|ACY58688.1| peptide chain release factor 1 [Yersinia pestis D106004] gi|262365894|gb|ACY62451.1| peptide chain release factor 1 [Yersinia pestis D182038] gi|270339381|gb|EFA50158.1| peptide chain release factor 1 [Yersinia pestis KIM D27] gi|294354371|gb|ADE64712.1| peptide chain release factor 1 [Yersinia pestis Z176003] gi|320015305|gb|ADV98876.1| peptide chain release factor RF-1 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 360 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDLEMREMAQEELKIAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKEI+A ISG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEGEHGGYKEIIAKISGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAELPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|322391878|ref|ZP_08065343.1| peptide chain release factor RF1 [Streptococcus peroris ATCC 700780] gi|321145358|gb|EFX40754.1| peptide chain release factor RF1 [Streptococcus peroris ATCC 700780] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQTVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKEAGGDADLEEMAKQELKDAKSEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|307296979|ref|ZP_07576795.1| peptide chain release factor 1 [Sphingobium chlorophenolicum L-1] gi|306877505|gb|EFN08733.1| peptide chain release factor 1 [Sphingobium chlorophenolicum L-1] Length = 363 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 179/357 (50%), Positives = 260/357 (72%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +S ++I ++ R E++ M+ + + +++L++EYA I P+ + +QE L Sbjct: 3 ISAERIAQIEARRDEVQASMTRADLAPEEFVRLSKEYAEIEPVARAAHEVRRLRQELSAL 62 Query: 63 HTVI--GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + D ++D +R++AQ E+ I+ + + E + LLPKD D + +LEIRAGT Sbjct: 63 EYMAGGEDADADPLMREMAQEEMQLIKSRLPDAERALALQLLPKDAADARPAMLEIRAGT 122 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY+RYA + WK+E++S++ ++ GGYKE+VA+++G GVF+++KFES Sbjct: 123 GGDEAALFAGDLFRMYQRYADAQGWKMELISANASEVGGYKEVVASVTGVGVFAKLKFES 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPE E+DV I D++ID RASG+GGQHVNTT Sbjct: 183 GVHRVQRVPVTESGGRIHTSAATVAVLPEPEEVDVQIADSDLKIDIYRASGAGGQHVNTT 242 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+GI+VT + +SQH+N+ +AM+VLRAR+Y+VER+R +E++ RK +GS Sbjct: 243 DSAVRITHLPSGIVVTQQDERSQHKNKAKAMQVLRARIYEVERERAQSEQAGARKAMVGS 302 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF QGR+TDHRINLTL++L +L+G + ++I+ L+ +A + Sbjct: 303 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLSEVIDALVAEDEAARLAQL 359 >gi|289163904|ref|YP_003454042.1| peptide chain release factor 1 [Legionella longbeachae NSW150] gi|288857077|emb|CBJ10892.1| peptide chain release factor 1 [Legionella longbeachae NSW150] Length = 362 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 166/361 (45%), Positives = 244/361 (67%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + R+ E+ +SE+ + + L++EYA + PI + Y + K Sbjct: 1 MKKSLELKLQQMLERYQEVGRLLSEASVIADQNQFKTLSKEYAQLEPIATCYETYIEAKD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L ++ D E+ +A E+ + ++++ EL+ ++ + L+PKD DD+++ LEIR Sbjct: 61 NVSSLEELLA--GEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL+RMY RYA + W+ E++S+S + GGYKEI+ ISG V+S++K Sbjct: 119 AGTGGDEAAIFAGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA+LPE E D+ I +D+RIDT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V E+SQH+NR +AM +L+ RL D E+ + E++ RK Sbjct: 239 VNKTDSAIRITHIPTGVVVECQDERSQHKNRSKAMSLLKTRLLDAEQSKQRKEQAQTRKS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYN+ QGR+TDHRINLT+Y+L V++G + ++ PL + A+++ Sbjct: 299 LVGTGDRSERIRTYNYPQGRLTDHRINLTIYQLNDVMEGKLSLVVEPLKREYHAELLAEL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|296876522|ref|ZP_06900573.1| peptide chain release factor RF1 [Streptococcus parasanguinis ATCC 15912] gi|296432515|gb|EFH18311.1| peptide chain release factor RF1 [Streptococcus parasanguinis ATCC 15912] Length = 359 Score = 273 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKEAGDDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|291541665|emb|CBL14775.1| bacterial peptide chain release factor 1 (bRF-1) [Ruminococcus bromii L2-63] Length = 357 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I R++E+ R+ + + Y K+ +E +I I+ Y + Q E+D Sbjct: 3 EKIEIFDKRYSELSERLYQPSVAGNPEEYQKIMKEIKSIEEIVLTYRKYKEAVQTEKDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+++LAQIE+ + I+ L ++ LLLPKD +D+++ I+EIR G GG Sbjct: 63 EIL-EETSDKELKELAQIELDEAKDNIKNLAEDLKILLLPKDPNDERNVIVEIRGGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF LFRMY YA + +K+E++++++ + GGYKEI I G G +SR K+ESGVH Sbjct: 122 ESALFSAVLFRMYSMYAEKKGFKIEIINANETEIGGYKEISFMIEGEGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS TVAVLPEA +++++I D++IDT R+SG+GGQH+N T SA Sbjct: 182 RVQRVPETESQGRVHTSTTTVAVLPEAEDVELEIDPNDLKIDTFRSSGAGGQHINKTSSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTG++V E+SQ++N+ +A+KVL++RL ++ + A+E + NRK+Q+G+GDR Sbjct: 242 IRITHLPTGMVVECQDERSQYKNKDKALKVLKSRLLKEKQDKQASEIAENRKMQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR+TDHRI LTLYKLE +L G +D++I+ L+ A +A+ + + E Sbjct: 302 SERIRTYNYPQGRVTDHRIGLTLYKLEEILNGSLDEVIDALVAADRAEKLKESME 356 >gi|320538900|ref|ZP_08038576.1| peptide chain release factor RF-1 [Serratia symbiotica str. Tucson] gi|320031060|gb|EFW13063.1| peptide chain release factor RF-1 [Serratia symbiotica str. Tucson] Length = 361 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ E++ + ++ + D + L+ EYA ++ + + Q + + Sbjct: 8 KLEALQERYEEVQALLGDAGVIAEQDRFRALSREYAQLTDVSRCFLKWRQIQGDLATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E+R++AQ E+ + +ELE ++ LLLPKD DD+ C LE+RAGTGG E Sbjct: 68 M----QDDPEMREMAQEELKQAKATTKELEQQLQVLLLPKDPDDEGGCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A +SG GV+ ++KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAETRRWRVEMISANEGEHGGYKEVIAKVSGEGVYGQLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E ++ DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPEVPEAEMPDITQSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLTLY+L+ V+ G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVMAGKLDMLIQPIVQEYQADQLAALS 357 >gi|300723054|ref|YP_003712352.1| peptide chain release factor RF-1 [Xenorhabdus nematophila ATCC 19061] gi|297629569|emb|CBJ90172.1| peptide chain release factor RF-1 [Xenorhabdus nematophila ATCC 19061] Length = 360 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+ + ++ + + L++EYA ++ + + + + + + Sbjct: 8 KLEALQERHEEVLAHLGDAEVIADQERFRALSKEYAQLTDVTNCFKAWKSVQDDLETAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQAELKDAKIRNEELEQQLQVLLLPKDPDDERNCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A +SG V+ +KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWRVEIMSANEGEHGGYKEVIAKVSGEQVYGHLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVA+LPE E + +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAILPEVPEAELPEINPGDLKIDTYRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMRKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+LE +++G +D +I P++T +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLEEIMEGKLDMLIQPIITEYQADQLSALSE 358 >gi|332366923|gb|EGJ44664.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1059] Length = 359 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E ++ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEESSTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|307709438|ref|ZP_07645895.1| peptide chain release factor 1 [Streptococcus mitis SK564] gi|307619752|gb|EFN98871.1| peptide chain release factor 1 [Streptococcus mitis SK564] Length = 359 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKVEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASINGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|288802476|ref|ZP_06407915.1| peptide chain release factor 1 [Prevotella melaninogenica D18] gi|288335004|gb|EFC73440.1| peptide chain release factor 1 [Prevotella melaninogenica D18] Length = 370 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 218/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ R+ E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 9 QKLDGLEARYEEVSTLITDPSVIADQSRYVKLTKEYKDLGDIMDARRRYINCLTTIKEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + N D+E++++A+ E+ E LE EI LL+PKD +D K+ +EIR G GG Sbjct: 69 DIITNEN-DAEMKEMAREELSENEALQPALEEEIKLLLVPKDPEDAKNVQMEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+RY + WK+ + S S+ GG+KEI + G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKRYCDKKDWKLSITSVSEGTAGGFKEIDFAVEGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHEHQKYVDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I D+I+ L A A+ + Sbjct: 308 TLVSTGDRSAKIRTYNYPQGRVTDHRIGFTTHDLQGFMNGEIQDMIDALTVAENAEKLKE 367 >gi|291514939|emb|CBK64149.1| bacterial peptide chain release factor 1 (bRF-1) [Alistipes shahii WAL 8301] Length = 361 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 158/353 (44%), Positives = 229/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ LK ++ E ++++ + +I+LT+EY + PII Y + Sbjct: 9 RLDGLKLKYEETGQKLTDPEVIADVKQFIQLTKEYKELEPIIETSERYRTAIANLAEAKD 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D E+R++A+ + +E ++ ++E EI LL+PKD D K+ I+EIR GTGG E Sbjct: 69 TLA-TDKDEEMREMAREMIAELEPQLAQMEEEIKLLLIPKDPQDSKNAIVEIRGGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDL RMY +Y + W+ E+ SSSD GG+KE+V +SG+ V+ +K+ESGVHR Sbjct: 128 AAIFAGDLLRMYTKYIESKGWRYEITSSSDGAAGGFKEVVLKVSGQNVYGTLKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTSAA+VAVLPEA E D++I + DIR D ASG GGQ VNTT SA+ Sbjct: 188 VQRVPQTETQGRVHTSAASVAVLPEAEEFDIEISMNDIRKDIFCASGPGGQSVNTTYSAI 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +KSQ +N +A + LR R++++E + +E ++ RK + +GDRS Sbjct: 248 RLTHIPTGIVVQCQDQKSQLKNFDKAFEELRTRVFNLEYSKYLDEIASKRKTMVSTGDRS 307 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + + Sbjct: 308 AKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKESE 360 >gi|115375817|ref|ZP_01463069.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1] gi|310822927|ref|YP_003955285.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1] gi|115367205|gb|EAU66188.1| peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1] gi|309395999|gb|ADO73458.1| Peptide chain release factor 1 [Stigmatella aurantiaca DW4/3-1] Length = 366 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 232/355 (65%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++ RF + +S + KL ++E AA+ ++ Y + + + Sbjct: 1 MIDKLEEVERRFERLTADLSNPDVLADSAKLQKVSKERAALEKLVETFRTYRKVLGDLAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D++ + A+ + ++++ E E E+ LLLPKD +D+K ILEIRAG G Sbjct: 61 VEAWL--DGGDADEKAYAREALPGLKQQREEFEQELKILLLPKDPNDEKDVILEIRAGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF ++ +MY RYA R WK +++ S GG K++ T+SG VFS MK+ESG Sbjct: 119 GDEAGLFAEEVMQMYLRYATRRGWKADIVDMSPGSVGGVKDVTITLSGAAVFSNMKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS TV+V+PEA ++DV I DI + MR++GSGGQ VNTTD Sbjct: 179 VHRVQRVPATETQGRIHTSTITVSVMPEAEDVDVQINPADIEMQVMRSTGSGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H P+GI+V EKSQ +NR +AM++LRA+LY++E++R+ +ER + R+ Q+G+G Sbjct: 239 SAVRLIHKPSGIVVKCQQEKSQTKNRAQAMRMLRAKLYEIEQERIRSERDSMRRGQVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSE+IRTYNF Q R+TDHRI+LT++ L ++ G IDD+I T +QA+ + Sbjct: 299 DRSEKIRTYNFPQDRLTDHRISLTVHNLPGIMAGGIDDVITACRTHYQAEALKQQ 353 >gi|314935933|ref|ZP_07843283.1| peptide chain release factor 1 [Staphylococcus hominis subsp. hominis C80] gi|313655939|gb|EFS19681.1| peptide chain release factor 1 [Staphylococcus hominis subsp. hominis C80] Length = 358 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 163/353 (46%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y K++E ++ Sbjct: 3 DQLDIVEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEID 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E ++ E+ ELE ++ +LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLTET-DDKEEIEMLKEEASGLKGELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ ++++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE ++++++ ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTGI+ TSSEKSQ QNR +A+KVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGIIATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ER+RTYN+ Q R+TDHRI LTL KL+ +++G +D+II+ L + Q + + + Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLSEQTEKLKELN 354 >gi|238855957|ref|ZP_04646243.1| peptide chain release factor 1 [Lactobacillus jensenii 269-3] gi|260664674|ref|ZP_05865526.1| peptide chain release factor 1 [Lactobacillus jensenii SJ-7A-US] gi|282934364|ref|ZP_06339631.1| peptide chain release factor 1 [Lactobacillus jensenii 208-1] gi|313471876|ref|ZP_07812368.1| peptide chain release factor 1 [Lactobacillus jensenii 1153] gi|238831430|gb|EEQ23781.1| peptide chain release factor 1 [Lactobacillus jensenii 269-3] gi|239529209|gb|EEQ68210.1| peptide chain release factor 1 [Lactobacillus jensenii 1153] gi|260561739|gb|EEX27711.1| peptide chain release factor 1 [Lactobacillus jensenii SJ-7A-US] gi|281301574|gb|EFA93851.1| peptide chain release factor 1 [Lactobacillus jensenii 208-1] Length = 362 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 157/354 (44%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L R+ EI+ M++ ++ Y+++++E A + ++ K Y + ++ D Sbjct: 7 QLEGLVARYEEIQELMADPEVINDTKRYMEISKEEADMREVVQKYRKYQEDQKTISDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + SD+++ ++A+ E +EKE+ +LE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 II-ESESDADLVEMAKEENSDLEKEVADLEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WK+ V+ + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAETQGWKISVIDEETTEVGGYKHVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNQASYDEKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ +Q K + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIISALIVHYQTKQLEELAE 359 >gi|21241714|ref|NP_641296.1| peptide chain release factor 1 [Xanthomonas axonopodis pv. citri str. 306] gi|294626107|ref|ZP_06704714.1| peptide chain release factor 1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666025|ref|ZP_06731287.1| peptide chain release factor 1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|24418638|sp|Q8PNU5|RF1_XANAC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21107082|gb|AAM35832.1| peptide chain release factor 1 [Xanthomonas axonopodis pv. citri str. 306] gi|292599556|gb|EFF43686.1| peptide chain release factor 1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292604217|gb|EFF47606.1| peptide chain release factor 1 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 361 Score = 272 bits (696), Expect = 4e-71, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLQALAERREELQHLLSDPDVVGNNDTFRTLSRELSQLEPVAVALEEEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + +L+ ++ LL+P+D DD + LE+R Sbjct: 61 DLATAEAL----RNDPEMRELAEEEIAAAQARLEQLDAQLASLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEITINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L D ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLLDTERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIGRLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|325300471|ref|YP_004260388.1| Peptide chain release factor 1 [Bacteroides salanitronis DSM 18170] gi|324320024|gb|ADY37915.1| Peptide chain release factor 1 [Bacteroides salanitronis DSM 18170] Length = 370 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 154/362 (42%), Positives = 229/362 (63%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY +S I+ Y Q ++ Sbjct: 10 EKLDGLVARFEEVSTLITDPSVIADQKRYVKLTKEYKELSDIMKARGEYLQCLNGLEEAK 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ +D E++++A+ E A E I ELE EI LL+P D DD++ ILEIR GTGG Sbjct: 70 MMMGE--NDPELKEMAREEAAACEARIPELEEEIKLLLIPADPQDDRNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV S+S+ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYSKYCERKGWKLEVSSASEGASGGFKEIICSVTGDKVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYNWKNPNTGVVEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|325981709|ref|YP_004294111.1| peptide chain release factor 1 [Nitrosomonas sp. AL212] gi|325531228|gb|ADZ25949.1| peptide chain release factor 1 [Nitrosomonas sp. AL212] Length = 359 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 244/353 (69%), Gaps = 9/353 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L R E+ +S +D Y KLT E+A I PI+ Y +++ Q Sbjct: 7 DRLTRLSVRLDELNHLLSSESATADLDHYRKLTREHAEIVPIVELYRSYQHFERDVQTAR 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D ++R A+ E+ ++++ ++E+EI LLPKD +D+++ LEIRAGTGG Sbjct: 67 EMHA----DLDMRAFAETEIQIGKEKLIQIESEIQKQLLPKDPNDERNIFLEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF G+LFRMY RYA ++W+VE++S S ++ GGYKEI+A I G G +S++KFESG H Sbjct: 123 ESALFAGNLFRMYSRYAERQRWQVEIISQSLSEIGGYKEIIAKIIGYGAYSKLKFESGGH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE GRVHTS TVA++PEA E+ + ++RIDT RASG+GGQH+N TDS Sbjct: 183 RVQRVPVTETQGRVHTSTCTVAIMPEADEVSEVVLNPAELRIDTFRASGAGGQHINKTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTGI+V +SQH+N+ +A+ VL AR++D + + E++A RK +G+G+ Sbjct: 243 AVRVTHLPTGIVVECQDGRSQHKNKAQALSVLAARIHDKQMRAQHAEQAAARKSLVGTGE 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR+TDHRINLTLYK++ ++ G ID++ + L+ HQA+++ + Sbjct: 303 RSERIRTYNFPQGRVTDHRINLTLYKMDQIMDGDIDELCSALMAEHQAELLAA 355 >gi|150002702|ref|YP_001297446.1| peptide chain release factor 1 [Bacteroides vulgatus ATCC 8482] gi|254882204|ref|ZP_05254914.1| peptide chain release factor 1 [Bacteroides sp. 4_3_47FAA] gi|294776956|ref|ZP_06742417.1| peptide chain release factor 1 [Bacteroides vulgatus PC510] gi|319643236|ref|ZP_07997864.1| peptide chain release factor 1 [Bacteroides sp. 3_1_40A] gi|149931126|gb|ABR37824.1| peptide chain release factor 1 [Bacteroides vulgatus ATCC 8482] gi|254834997|gb|EET15306.1| peptide chain release factor 1 [Bacteroides sp. 4_3_47FAA] gi|294449204|gb|EFG17743.1| peptide chain release factor 1 [Bacteroides vulgatus PC510] gi|317385140|gb|EFV66091.1| peptide chain release factor 1 [Bacteroides sp. 3_1_40A] Length = 371 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 225/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY ++ I+ Y Q ++ Sbjct: 10 EKLDGLVARFEEVSTLITDPNVIADQKRYVKLTKEYKDLNDIMKARREYIQCLNGLEEAK 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E++++A+ E E I ELE EI LL+P D DD++ ILEIR GTGG Sbjct: 70 QIMT-NESDPEMKEMAREEANLCEVRIPELEEEIKLLLVPADPQDDRNAILEIRGGTGGD 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + W++EV S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 129 EAAIFAGDLFRMYSKYCETKGWRLEVSSANEGAAGGFKEIICSVTGDKVYGTLKYESGVH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 189 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 248 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 249 VRLRYNWKNPNTGIVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 308 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L A A+ + Sbjct: 309 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLTVAENAERLKE 368 Query: 355 AS 356 + Sbjct: 369 SE 370 >gi|322385289|ref|ZP_08058934.1| peptide chain release factor RF1 [Streptococcus cristatus ATCC 51100] gi|321270548|gb|EFX53463.1| peptide chain release factor RF1 [Streptococcus cristatus ATCC 51100] Length = 359 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|29349618|ref|NP_813121.1| peptide chain release factor 1 [Bacteroides thetaiotaomicron VPI-5482] gi|253570013|ref|ZP_04847422.1| peptide chain release factor 1 [Bacteroides sp. 1_1_6] gi|298383879|ref|ZP_06993440.1| peptide chain release factor 1 [Bacteroides sp. 1_1_14] gi|32171531|sp|Q8A011|RF1_BACTN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|29341528|gb|AAO79315.1| peptide chain release factor 1 [Bacteroides thetaiotaomicron VPI-5482] gi|251840394|gb|EES68476.1| peptide chain release factor 1 [Bacteroides sp. 1_1_6] gi|298263483|gb|EFI06346.1| peptide chain release factor 1 [Bacteroides sp. 1_1_14] Length = 370 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEISTLITDPAVIADQKRYVKLTKEYKDLDDLMKARKEYIQLLGNIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+++R++A+ E+ ++ + LE EI +L+P D D K+ ILEIR G GG Sbjct: 69 NILS-NESDADMREMAKEEMDNSQERLPALEEEIKLMLVPADPQDSKNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV ++++ GGYKEIV +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSNANEGTAGGYKEIVCSVTGDNVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGVAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|330684805|gb|EGG96498.1| peptide chain release factor 1 [Staphylococcus epidermidis VCU121] Length = 358 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 166/353 (47%), Positives = 246/353 (69%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E D+ Sbjct: 3 DQLEIVEERYEQLNEMLSDPDVVNDSDKLRKYSKEQAELQKTVDVYRSYKSKKEELADIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E ++ + E +++ E+ E+E ++ LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLNET-SDKEEIEMLKEESSSLKNELPEMEEQLKLLLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA +K E++ S++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLMRMYSKYAEAHHFKTEIVEVSESDHGGYKEISFSVSGNGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + ++ RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYASQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL +++G +D+II+ L + Q + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLSQIMEGNLDEIIDALTLSEQTDKLKELN 354 >gi|225630064|ref|YP_002726855.1| peptide chain release factor 1 [Wolbachia sp. wRi] gi|225592045|gb|ACN95064.1| peptide chain release factor 1 [Wolbachia sp. wRi] Length = 357 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 184/357 (51%), Positives = 251/357 (70%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + DLK +F +IE + ++ +I L++EY+ + PII I Y+ K+E DL Sbjct: 1 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 60 Query: 63 HTVIGDHNSDSEIRD-LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D NS+ +I++ + + + +++ ++ LLPKD DD ++ ILEIRAGTG Sbjct: 61 EEIMKDENSEGDIKELAKEEFFEKHKVLLPKIKAKLKLALLPKDEDDSRNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF LFRMY++YA R WK E +S S+ GGYKE A I+G VF+R+KFESG Sbjct: 121 GEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+SGR+HTSAATVA+LPE E+D I +D+RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V EKSQH+N+ +A+KVLRARLY++ER++ ERS RK QIGSG Sbjct: 241 SAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF Q RITDHRINLT ++LE ++ +G +D+ I L++ ++A+ + S Sbjct: 301 DRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERLAGES 357 >gi|222153023|ref|YP_002562200.1| peptide chain release factor 1 [Streptococcus uberis 0140J] gi|254790901|sp|B9DS45|RF1_STRU0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|222113836|emb|CAR41933.1| peptide chain release factor 1 [Streptococcus uberis 0140J] Length = 359 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 157/359 (43%), Positives = 232/359 (64%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ L++R+ E+ +S+ V +++L++E A ++ Y Q Sbjct: 1 MNIYDQLQSLEDRYEELGELLSDPEVVSDTKRFMELSKEEANTRETVATYRQYKDIIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D EI ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKESGGDPEIEEMAKEELKESKVAKEDYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+R+A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLDMYQRFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE +++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEDVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + ++ Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTQKLETLNQ 359 >gi|212690981|ref|ZP_03299109.1| hypothetical protein BACDOR_00471 [Bacteroides dorei DSM 17855] gi|237712531|ref|ZP_04543012.1| peptide chain release factor 1 [Bacteroides sp. 9_1_42FAA] gi|237726705|ref|ZP_04557186.1| peptide chain release factor 1 [Bacteroides sp. D4] gi|265752224|ref|ZP_06088017.1| peptide chain release factor 1 [Bacteroides sp. 3_1_33FAA] gi|212666213|gb|EEB26785.1| hypothetical protein BACDOR_00471 [Bacteroides dorei DSM 17855] gi|229435231|gb|EEO45308.1| peptide chain release factor 1 [Bacteroides dorei 5_1_36/D4] gi|229453852|gb|EEO59573.1| peptide chain release factor 1 [Bacteroides sp. 9_1_42FAA] gi|263237016|gb|EEZ22486.1| peptide chain release factor 1 [Bacteroides sp. 3_1_33FAA] Length = 371 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 150/362 (41%), Positives = 225/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY ++ I+ Y Q ++ Sbjct: 10 EKLDGLVARFEEVSTLITDPNVIADQKRYVKLTKEYKDLNDIMKARREYIQCLNGLEEAK 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E++++A+ E E I ELE EI LL+P D DD++ ILEIR GTGG Sbjct: 70 QIMT-NESDPEMKEMAREEANLCEVRIPELEEEIKLLLVPADPQDDRNAILEIRGGTGGD 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 129 EAAIFAGDLFRMYSKYCETKGWKLEVSSANEGAAGGFKEIICSVTGDKVYGTLKYESGVH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 189 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 248 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 249 VRLRYNWKNPNTGIVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 308 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L A A+ + Sbjct: 309 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLTVAENAERLKE 368 Query: 355 AS 356 + Sbjct: 369 SE 370 >gi|293609440|ref|ZP_06691742.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827892|gb|EFF86255.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|325122703|gb|ADY82226.1| peptide chain release factor 1 [Acinetobacter calcoaceticus PHEA-2] Length = 362 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ +S I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLSEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKTLLEELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|169832291|ref|YP_001718273.1| peptide chain release factor 1 [Candidatus Desulforudis audaxviator MP104C] gi|238688348|sp|B1I6L2|RF1_DESAP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169639135|gb|ACA60641.1| peptide chain release factor 1 [Candidatus Desulforudis audaxviator MP104C] Length = 355 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 173/352 (49%), Positives = 244/352 (69%), Gaps = 5/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ ++ E+ +S+ + + + +A I +++ Y + E D Sbjct: 4 KLDHLEAKYEELNRLISDPVVIQDQERWRGYVKSHAEIGEVVAVYREYKRVAAEMDDARQ 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D+E+R+LA+ EV + + EL + LLLPKD +D+K+ I+EIRAGTGG E Sbjct: 64 MLREE-QDAELRELAESEVEVLRERSDELRRRLRVLLLPKDPNDEKNVIIEIRAGTGGEE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDL RMY RYA R W+ E+L+ ++ D GG KE + + GRG +S +KFESGVHR Sbjct: 123 AALFAGDLLRMYLRYAERRGWRAEMLNVNETDLGGIKEAIVLLEGRGAYSELKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVAVLPEA E+DV+I ED+RID ++G GGQ VNTT SAV Sbjct: 183 VQRVPATESGGRIHTSAATVAVLPEAEEVDVEIRPEDLRIDVFCSTGPGGQSVNTTQSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+P+GI+V EKSQH+NR +AMKVLRARL D ++ +++RK Q+G+GDRS Sbjct: 243 RVTHLPSGIVVSCQDEKSQHKNRDKAMKVLRARLLDKAQQEQQERIASSRKTQVGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ERIRTYNF Q R+TDHR+NLTLY+LE VLQG + + ++ L+T+ QA+ + + Sbjct: 303 ERIRTYNFPQNRVTDHRLNLTLYRLEEVLQGDLHEFVSALITSDQAEKLKTL 354 >gi|34580401|ref|ZP_00141881.1| peptide chain release factor RF-1 [Rickettsia sibirica 246] gi|28261786|gb|EAA25290.1| peptide chain release factor RF-1 [Rickettsia sibirica 246] Length = 355 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 250/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLLE 354 >gi|322411678|gb|EFY02586.1| peptide chain release factor 1 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 359 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMALSKEEASTRDTVTTYREYKQVIQAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D N D E+ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 ADAEEMIKDANGDPELEEMAKEELKESKAAKEDYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+II+ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEIIDALVMYDQTQKLESLN 358 >gi|260549389|ref|ZP_05823608.1| peptide chain release factor 1 [Acinetobacter sp. RUH2624] gi|260407498|gb|EEX00972.1| peptide chain release factor 1 [Acinetobacter sp. RUH2624] Length = 362 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKALLEELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|238899147|ref|YP_002924829.1| peptide chain release factor RF-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|259585226|sp|C4K7Y8|RF1_HAMD5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229466907|gb|ACQ68681.1| peptide chain release factor RF-1 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 360 Score = 272 bits (696), Expect = 5e-71, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 249/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M K++ L+ R E++ +++ ++ + ++ EYA +S I + + + + Sbjct: 1 MKPSFIKKLEALQERHEELQAHLADPLTIQDQERFRMMSREYAQLSNIAELFTEWLKLQN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ D E+ ++A E+ + + +L ++ LLLPKD DD +SC LEIR Sbjct: 61 DMIAAKSLLQ----DPEMHEMATEELEKAKIQSEQLTQQLQILLLPKDIDDSRSCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R WK+E++S+ + + GGYKE++ ISG GV+ ++K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAESRSWKMEIISAHEGEHGGYKEMITKISGEGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E + I L D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPTTESQGRIHTSACTVAVMPEIPEEELPKITLSDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR++ + ++ +++ R+ Sbjct: 237 VNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLGARMHAAQVQKRQQAQASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V+ G +D +I+PLL HQA ++ + Sbjct: 297 LLGSGDRSDRHRTYNFPQGRVTDHRINLTLYRLDEVMSGKLDILIHPLLREHQADLLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|294341235|emb|CAZ89636.1| Peptide chain release factor 1 (RF-1) [Thiomonas sp. 3As] Length = 358 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 157/352 (44%), Positives = 228/352 (64%), Gaps = 9/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ ++ R E++ ++ + + +T E A + ++ Y K + Sbjct: 1 MKPSLLDKLEQMQRRADELDALLAAPDCTADLQRFRNMTRELAELQAVVGLYVQYKTKTE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ SD ++++LAQ E+ + LE + LLP+D DD ++ +EIR Sbjct: 61 DLSQAESLL----SDPDMKELAQQEIQDARAALDALEARLQVALLPRDPDDSRNVFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RYA ++W EV+S S +D GGYKE++ ++G G + +K Sbjct: 117 AGTGGEESALFAADLLRMYARYAERKRWTTEVISESPSDLGGYKEVILRVAGEGAYGLLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 +ESG HRVQRVP TE GR+HTSAATVAV+PE E + I D+RIDT RASG+GGQH Sbjct: 177 YESGGHRVQRVPKTETQGRIHTSAATVAVMPEVDEAQAIQINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG++V E+SQH+N+ RA+ VL ARL + ER+ E +A RK Sbjct: 237 INKTDSAIRITHLPTGLVVECQDERSQHRNKARALSVLAARLAERERQARQAEEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +GSGDRS+RIRTYNF QGR+++HRINLTLYK++ +L G +D+++ L T Sbjct: 297 LVGSGDRSDRIRTYNFPQGRVSEHRINLTLYKIDAILDGDLDELLTALRTED 348 >gi|312865182|ref|ZP_07725410.1| peptide chain release factor 1 [Streptococcus downei F0415] gi|311099293|gb|EFQ57509.1| peptide chain release factor 1 [Streptococcus downei F0415] Length = 359 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 158/359 (44%), Positives = 233/359 (64%), Gaps = 4/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMQLSREEASSRETVTVYREYKQILQAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D E+ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKEAGGDPELEEMAKEELKDSKIAKEDYEEKMKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLNMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + ++ Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVLYDQTKKLEELAQ 359 >gi|262282281|ref|ZP_06060049.1| peptide chain release factor 1 [Streptococcus sp. 2_1_36FAA] gi|262261572|gb|EEY80270.1| peptide chain release factor 1 [Streptococcus sp. 2_1_36FAA] Length = 359 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|327460378|gb|EGF06715.1| peptide chain release factor RF1 [Streptococcus sanguinis SK1057] Length = 359 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMDLSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|322389535|ref|ZP_08063086.1| peptide chain release factor RF1 [Streptococcus parasanguinis ATCC 903] gi|321143810|gb|EFX39237.1| peptide chain release factor RF1 [Streptococcus parasanguinis ATCC 903] Length = 359 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKEAGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|194398144|ref|YP_002037655.1| peptide chain release factor 1 [Streptococcus pneumoniae G54] gi|238690818|sp|B5E4D9|RF1_STRP4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194357811|gb|ACF56259.1| peptide chain release factor 1 [Streptococcus pneumoniae G54] Length = 359 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEXDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|153807530|ref|ZP_01960198.1| hypothetical protein BACCAC_01810 [Bacteroides caccae ATCC 43185] gi|149129892|gb|EDM21104.1| hypothetical protein BACCAC_01810 [Bacteroides caccae ATCC 43185] Length = 370 Score = 272 bits (695), Expect = 5e-71, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 228/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEISTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYMQLLGNIEEAR 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+++R++A+ E+ + ++ + LE EI +L+P D D K+ ILEIR GTGG Sbjct: 69 NILA-NESDADMREMAKEEMDSSQERLPVLEEEIKLMLVPADPQDSKNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKYCETKGWKMEVSSANEGAAGGFKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGVAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLTAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|311279353|ref|YP_003941584.1| peptide chain release factor 1 [Enterobacter cloacae SCF1] gi|308748548|gb|ADO48300.1| peptide chain release factor 1 [Enterobacter cloacae SCF1] Length = 360 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 166/355 (46%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGTIADQERFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + + +LE ++ LLLPKD DD+++ +E+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKDKSEQLEQQLQVLLLPKDPDDERNAFVEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKE++A +SG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEVIAKVSGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E ++ +I ++RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAEMPEINPTELRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAEVAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEYQADQLAALSE 358 >gi|169795523|ref|YP_001713316.1| peptide chain release factor 1 [Acinetobacter baumannii AYE] gi|213158536|ref|YP_002319834.1| peptide chain release factor 1 [Acinetobacter baumannii AB0057] gi|215483010|ref|YP_002325215.1| peptide chain release factor 1 [Acinetobacter baumannii AB307-0294] gi|332850713|ref|ZP_08432960.1| peptide chain release factor 1 [Acinetobacter baumannii 6013150] gi|332866986|ref|ZP_08437303.1| peptide chain release factor 1 [Acinetobacter baumannii 6013113] gi|226739095|sp|B7H0L9|RF1_ACIB3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739096|sp|B7IBA1|RF1_ACIB5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238688120|sp|B0V7E0|RF1_ACIBY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169148450|emb|CAM86316.1| peptide chain release factor 1 [Acinetobacter baumannii AYE] gi|213057696|gb|ACJ42598.1| peptide chain release factor 1 [Acinetobacter baumannii AB0057] gi|213989032|gb|ACJ59331.1| peptide chain release factor 1 [Acinetobacter baumannii AB307-0294] gi|332730550|gb|EGJ61866.1| peptide chain release factor 1 [Acinetobacter baumannii 6013150] gi|332734315|gb|EGJ65443.1| peptide chain release factor 1 [Acinetobacter baumannii 6013113] Length = 362 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKVLLEELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAESQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|188996904|ref|YP_001931155.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1] gi|188931971|gb|ACD66601.1| peptide chain release factor 1 [Sulfurihydrogenibium sp. YO3AOP1] Length = 360 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 159/353 (45%), Positives = 246/353 (69%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ + ++E M++ + K+ +E+ +S I++ + Y + ++ +++ Sbjct: 8 QLESIEEKVKKLEELMADPEVLKDQSKIQSIAKEHKELSEILNLYNEYKKVSRQIEEVKQ 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D ++R+LA+ E+ +++K+ +LE +I LLPKD +D+K+ ILEIR G GG E Sbjct: 68 LLNSTPDD-DLRELAEEELESLKKQQEDLEKKIEIALLPKDPNDEKNVILEIRQGAGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF +LFRMY+RYA WK E+LS + GG KE++A I G+G +SR+K+ESGVHR Sbjct: 127 ASLFAAELFRMYQRYAERHGWKTEILSLHPTEKGGIKEVIALIKGKGAYSRLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS TVAVLPEA E+D++I E+++I+TMRA G+GGQHVNTTDSAV Sbjct: 187 VQRVPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELKIETMRAGGAGGQHVNTTDSAV 246 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V E+SQ QN+++AM++LRARL D + + + RK Q+G+G+RS Sbjct: 247 RITHIPTGMVVTCQDERSQLQNKMKAMQILRARLKDYYERLEKEKIAKERKEQVGTGERS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYNF Q R+TDHR+N T Y++ ++ G +D+II+ L+ + + + Sbjct: 307 EKIRTYNFPQNRVTDHRVNYTSYRINDIMDGDLDEIIDVLIAKENEEKLANLE 359 >gi|15672577|ref|NP_266751.1| peptide chain release factor 1 [Lactococcus lactis subsp. lactis Il1403] gi|13878663|sp|Q9CHX3|RF1_LACLA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|12723487|gb|AAK04693.1|AE006292_13 peptide chain release factor 1 [Lactococcus lactis subsp. lactis Il1403] gi|326406096|gb|ADZ63167.1| peptide chain release factor RF-1 [Lactococcus lactis subsp. lactis CV56] Length = 357 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 228/354 (64%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ + R+ E+ +S+ V +++L+ E A + ++ + Y + + D Sbjct: 3 DQLESIVGRYEELGELLSDPEVVSDTKRFMELSREEADLRDKVATYNEYKKVLETISDSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D +++++ + E+ + + + LE EI LLLPKD +D K+ ILEIR GG Sbjct: 63 EMLGEGGLDDDMKEMLKEELSSAKSQKELLEEEIKILLLPKDPNDGKNIILEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY+ ++ + WK E++ ++ GGYKE+ A ISG V+S++K+ESG H Sbjct: 123 EAALFAGDLLNMYQHFSESQGWKFEIMEANITGIGGYKEVSALISGPSVYSKLKYESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTS ATV V+PE E ++ I +D+R+D ASG+GGQ+VN +A Sbjct: 183 RVQRVPVTETQGRVHTSTATVLVMPEVEEFEMTIDQKDLRVDIYHASGAGGQNVNKVATA 242 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V E++Q +NR +A+K+L +++D ++ ++++A RK +G+GDR Sbjct: 243 VRMVHLPTGIKVEMQEERTQQKNRDKAIKLLNTKVFDYYQQIELDKQNAERKSTVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + + Sbjct: 303 SERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKMDEVIDALIVYDQTKKLEELN 356 >gi|116511384|ref|YP_808600.1| peptide chain release factor 1 [Lactococcus lactis subsp. cremoris SK11] gi|123125765|sp|Q031E4|RF1_LACLS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116107038|gb|ABJ72178.1| bacterial peptide chain release factor 1 (bRF-1) [Lactococcus lactis subsp. cremoris SK11] Length = 357 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 228/354 (64%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ + R+ E+ +S+ V +++L+ E A + ++ + Y + + D Sbjct: 3 DQLESIVGRYEELGELLSDPEVVSDTKRFMELSREEADLRDKVATYNEYKKVLETISDSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E++++ + E+ + + + LE EI LLLPKD +D K+ ILEIR GG Sbjct: 63 EMLGEGGLDDEMKEMLKEELSSAKSQKEVLEEEIKILLLPKDPNDGKNIILEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY+ ++ + WK E++ ++ GGYKE+ A ISG V+S++K+ESG H Sbjct: 123 EAALFAGDLLNMYQHFSESQGWKFEIMEANITGIGGYKEVSALISGPSVYSKLKYESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTS ATV V+PE E ++ I +D+R+D ASG+GGQ+VN +A Sbjct: 183 RVQRVPVTETQGRVHTSTATVLVMPEVEEFEMTIEQKDLRVDIYHASGAGGQNVNKVATA 242 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V E++Q +NR +A+K+L +++D ++ ++++A RK +G+GDR Sbjct: 243 VRMVHLPTGIKVEMQEERTQQKNRDKAIKLLNTKVFDYYQQIELDKQNAERKSTVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + + Sbjct: 303 SERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKMDEVIDALIVYDQTKKLEELN 356 >gi|228474912|ref|ZP_04059641.1| peptide chain release factor 1 [Staphylococcus hominis SK119] gi|228271144|gb|EEK12524.1| peptide chain release factor 1 [Staphylococcus hominis SK119] Length = 358 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 250/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y K++E ++ Sbjct: 3 DQLDIVEERYEQLNEMLSDPEIVNDPDKLRKYSKEQADLQKTVDVYRDYKSKREEVAEID 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E L ++ E+ ELE ++ +LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLTET-DDKEEIEMLKEEALGLKSELPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ ++++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLLRMYTKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE ++++++ ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEVRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTGI+ TSSEKSQ QNR +A+KVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGIIATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ER+RTYN+ Q R+TDHRI LTL KL+ +++G +D+II+ L + Q + + + Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLSEQTEKLKELN 354 >gi|307704777|ref|ZP_07641673.1| peptide chain release factor 1 [Streptococcus mitis SK597] gi|307621686|gb|EFO00727.1| peptide chain release factor 1 [Streptococcus mitis SK597] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E ++ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEESSSRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|171462958|ref|YP_001797071.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|238692839|sp|B1XSY0|RF1_POLNS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|171192496|gb|ACB43457.1| peptide chain release factor 1 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 240/362 (66%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R AE+ ++ +DAY KLT E++ I+ ++ + +Y Q + Sbjct: 1 MKPSMRAKLDHLDTRLAELNSLLTSEEATKDMDAYRKLTREHSDIATVVEQFYLYKQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + D E+++ A E + LE+ + LLLPKD +D+++ LEIR Sbjct: 61 DAQAAEEMRK----DPEMKEFADEEQKQALATMEALESTLQKLLLPKDENDERNVFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E ALF GDL RMY R+A + WKVEV+S++++D GGYKE+V + G+ V+SR+K Sbjct: 117 AGTGGDEGALFAGDLLRMYTRFAERQGWKVEVVSAAESDLGGYKEVVLRLVGQAVYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE GR+HTSA TVAV+PE E V I ++RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPQTETQGRIHTSACTVAVMPETDELEAVKINPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG +V ++SQH+NR +AMKVL +R+ D + + RK Sbjct: 237 INKTDSAIRITHLPTGTVVECQDDRSQHRNREQAMKVLVSRIMDAREREKHQLEAQTRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGRITDHRINLTLYK++ ++ G IDD+ N L + HQA+++ + Sbjct: 297 LVGTGDRSDRIRTYNFPQGRITDHRINLTLYKIDAMMDGDIDDLCNALASEHQAELLAAL 356 Query: 356 SE 357 + Sbjct: 357 GD 358 >gi|327399685|ref|YP_004340554.1| peptide chain release factor 1 [Hippea maritima DSM 10411] gi|327182314|gb|AEA34495.1| Peptide chain release factor 1 [Hippea maritima DSM 10411] Length = 354 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 184/345 (53%), Positives = 244/345 (70%), Gaps = 8/345 (2%) Query: 16 FAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 + IE ++S+ V D Y L+ E ++PI+ K Y ++ ++ + D Sbjct: 13 YKYIETQLSDPNVVGDLDRYKSLSSEIKKLTPIVEKAKEYRNILRQIEE----NEELLED 68 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+++LA+ E+ +++ + ELE EI LLLPKD DD+ ILEIRAGTGG EAALF DL Sbjct: 69 EELKELAKEELKHLKERLPELEQEIKLLLLPKDEADDRDVILEIRAGTGGEEAALFAADL 128 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 FRMY RYA + +KVEVLS S +D GG KEI+A I G+G + K ESG HRVQR+P TE Sbjct: 129 FRMYSRYAENKGFKVEVLSKSLSDTGGIKEIIAEIKGKGAYHLFKHESGTHRVQRIPITE 188 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + GR+HTSAATVAVLPEA +DV+I ED+RID RASG GGQHVNTTDSAVRITH+PTG Sbjct: 189 SQGRIHTSAATVAVLPEAENVDVEIKPEDLRIDVFRASGHGGQHVNTTDSAVRITHLPTG 248 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 ++V EKSQ +N+ +A+K+L++RLYD R++ ER+ RK QIGSGDRSERIRTYNF Sbjct: 249 MVVSCQDEKSQLKNKEKALKILKSRLYDFYRRKKDEERAKERKSQIGSGDRSERIRTYNF 308 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 QGR+TDHRINLTLYKL+ +++G +D++I L+ QA+ + + Sbjct: 309 PQGRVTDHRINLTLYKLDSIMEGDLDELIEALIVDEQARKLKESG 353 >gi|322374351|ref|ZP_08048865.1| peptide chain release factor 1 [Streptococcus sp. C300] gi|331266424|ref|YP_004326054.1| peptide chain release factor 1 [Streptococcus oralis Uo5] gi|321279851|gb|EFX56890.1| peptide chain release factor 1 [Streptococcus sp. C300] gi|326683096|emb|CBZ00714.1| peptide chain release factor 1 [Streptococcus oralis Uo5] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEDMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|317052432|ref|YP_004113548.1| peptide chain release factor 1 [Desulfurispirillum indicum S5] gi|316947516|gb|ADU66992.1| peptide chain release factor 1 [Desulfurispirillum indicum S5] Length = 355 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 172/353 (48%), Positives = 250/353 (70%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQD 61 +++ D+++R+ + +S + +L E + + ++ + ++E D Sbjct: 1 MLEKLQDIEDRYELLSAELSHPGATADTQRLQQATRELSELREVVEAFQQFKTVRRELAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+R++ Q E+ ++ + ++LE+ + LLLP+D +D K+ ILEIRAGTG Sbjct: 61 NQEMLT-SEKDRELREMIQQEIQSLRHQEQQLEDTLTELLLPRDPNDTKNIILEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY RYA R WKVEVLS ++ +GG++EI++ I GR V+SR+KFESG Sbjct: 120 GEEAALFATDLFRMYSRYADERGWKVEVLSVNETGNGGFREIISMIEGRNVYSRLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+SGR+HTSA TVAVLPEA E+D+DI D+RID R+SG+GGQHVNTTD Sbjct: 180 THRVQRVPQTESSGRIHTSAVTVAVLPEAEEVDIDINPADLRIDVYRSSGAGGQHVNTTD 239 Query: 242 SAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG+ + +SQH+N+ +A+ +LR+RL D ++ ++RS +RKLQ+GSG Sbjct: 240 SAVRVTHIPTGVSVACQEGRSQHKNKEKALSILRSRLLDHAVQQSDSQRSQDRKLQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF QGR+TDHR+NLTL++LE VL+G +D++I+ L + +A + Sbjct: 300 DRSERIRTYNFPQGRVTDHRVNLTLHRLEQVLEGDLDEVIDTLTKSARAGELS 352 >gi|301060315|ref|ZP_07201178.1| peptide chain release factor 1 [delta proteobacterium NaphS2] gi|300445511|gb|EFK09413.1| peptide chain release factor 1 [delta proteobacterium NaphS2] Length = 358 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 180/358 (50%), Positives = 249/358 (69%), Gaps = 6/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + + R+ E+E + + + + K +E++ ++PII+ + + + E Sbjct: 1 MAMFDKMKETEERYRELETFLGQPEIIQDQKRFQKYAKEHSDLTPIITVLREHQALQDEI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +++ D D EI+ LA+ E+ + + +E+ LLLPKD +D+K+ +LEIRAG Sbjct: 61 AESQSLLQDP--DPEIKKLAKEEIEGLNDRLERTADELTVLLLPKDPNDEKNILLEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DLFRMY RYA LR+WK E+LS + GG+KE++ I G VFSR+K+E Sbjct: 119 TGGEEAALFAADLFRMYSRYAELRRWKTEILSQNMTGIGGFKEVIVLIEGHRVFSRLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TEA GR+HTSA TVAVLPEA E+DV+I ED+RID R+SG GGQHVNT Sbjct: 179 SGVHRVQRVPETEAQGRIHTSAVTVAVLPEAEEVDVEIKPEDLRIDVYRSSGHGGQHVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V EKSQH+N+ +AMKVLR+R+ D+E + S RK +G Sbjct: 239 TDSAVRITHLPTGLVVTCQDEKSQHKNKAKAMKVLRSRMLDLETAHQHSRISEERKTMVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF QGR+TDHRI LTLYKL+ LQG ++ II PL+T Q++ + ++ Sbjct: 299 TGDRSERIRTYNFPQGRVTDHRIGLTLYKLDDFLQGDLNLIIEPLITYFQSEALKNSG 356 >gi|78046531|ref|YP_362706.1| peptide chain release factor 1 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|119361637|sp|Q3BX07|RF1_XANC5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78034961|emb|CAJ22606.1| peptide chain release factor 1 [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 361 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 244/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVGNNDTFRTLSRELSQLEPVAMALEEEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + +L+ ++ LL+P+D DD + LE+R Sbjct: 61 DLATAEAL----RNDPEMRELAEEEIAAAQARLEQLDAQLASLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEITINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L D ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLLDAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIGRLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|325689728|gb|EGD31732.1| peptide chain release factor RF1 [Streptococcus sanguinis SK115] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEDMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|58583231|ref|YP_202247.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84625067|ref|YP_452439.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188575465|ref|YP_001912394.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae PXO99A] gi|75434334|sp|Q5GWQ9|RF1_XANOR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361638|sp|Q2NZW2|RF1_XANOM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238689539|sp|B2SQN5|RF1_XANOP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|58427825|gb|AAW76862.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84369007|dbj|BAE70165.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188519917|gb|ACD57862.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 361 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 245/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVNNNDKFRTLSRELSQLEPVAVALEDEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + EL+ ++ LL+P+D DD + LE+R Sbjct: 61 DLSAAEAM----RTDPEMRELAEEEIAAAQARLEELDTQLASLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L D E + A ++ RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLLDTEHSKAAAAQAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|238788553|ref|ZP_04632346.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641] gi|238723466|gb|EEQ15113.1| Peptide chain release factor 1 [Yersinia frederiksenii ATCC 33641] Length = 360 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAHLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DLDAAEMMLE----DPEMREMAQEELKEAKARSEELEQQLQLLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|332637164|ref|ZP_08416027.1| peptide chain release factor 1 [Weissella cibaria KACC 11862] Length = 361 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 147/353 (41%), Positives = 231/353 (65%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + +R+ EI +S+ + ++ L++E ++ + Y + Sbjct: 6 EKVQAVVDRYDEISEMISDPDVISDTQRFMALSKEEGSLRETVETFKRYKDVVDGIEGNE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ ++A+ E+ ++ E LE +I LLLPKD +DDK+ I+EI GG Sbjct: 66 EMLNEGLGDAELEEMAKDELKELKAEKETLEEQIKILLLPKDPNDDKNIIMEIHGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E ALF DL+ MY+RYA + W VE++ + + GGYKEIV I+G V+S++KFE+G H Sbjct: 126 EGALFAADLYDMYQRYAEKQGWNVEIIDENKTEIGGYKEIVLMITGNNVYSKLKFENGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D++I +D+R+D R+SG+GGQHVN T SA Sbjct: 186 RVQRVPETESAGRVHTSTATVGVMPEYEDVDIEIEDKDLRVDVYRSSGAGGQHVNKTSSA 245 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+P+GI+V ++SQ QNR +A+++L+AR+YD + E + RK +G+GDR Sbjct: 246 VRMTHLPSGIVVAMQDQRSQQQNRAKALEILKARVYDYYASQNEAEYAEQRKTAVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G ++D+I+ L+ A Q + Sbjct: 306 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALIIADQTAKLEEL 358 >gi|259908618|ref|YP_002648974.1| peptide chain release factor 1 [Erwinia pyrifoliae Ep1/96] gi|224964240|emb|CAX55747.1| Peptide chain release factor 1 (RF-1) [Erwinia pyrifoliae Ep1/96] Length = 360 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + + L+ EYA ++ + + Q +++ Sbjct: 8 KLEALQERHEEVEALLGDAGVIADQERFRALSREYAQLTDVSRCFRQWQQCQEDMATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++G D+E+R++AQ E+ A EL+ ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 MLG----DAEMREMAQEELQAARAASDELQQQLQVLLLPKDPDDERNCYLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S+++ + GGYKE++A + G G + R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEYRRWKVEVMSANEGEHGGYKEVIAKVIGEGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPELPEAELPDINPSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E R E S+ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALGVLGSRIRAAEMARRQQEESSTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEAMEGKLDALIEPIVQEYQADQLAALS 357 >gi|125717977|ref|YP_001035110.1| peptide chain release factor 1 [Streptococcus sanguinis SK36] gi|166223611|sp|A3CN05|RF1_STRSV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|125497894|gb|ABN44560.1| Protein chain release factor A, putative [Streptococcus sanguinis SK36] gi|324991176|gb|EGC23110.1| peptide chain release factor RF1 [Streptococcus sanguinis SK353] gi|324994440|gb|EGC26353.1| peptide chain release factor RF1 [Streptococcus sanguinis SK678] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y + Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMDLSKEEASTRDTVTAYREYKKVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKDASGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|157150598|ref|YP_001450441.1| peptide chain release factor 1 [Streptococcus gordonii str. Challis substr. CH1] gi|172046863|sp|P47850|RF1_STRGC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157075392|gb|ABV10075.1| peptide chain release factor 1 [Streptococcus gordonii str. Challis substr. CH1] Length = 359 Score = 272 bits (695), Expect = 6e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|300716406|ref|YP_003741209.1| peptide chain release factor 1 (RF-1) [Erwinia billingiae Eb661] gi|299062242|emb|CAX59359.1| Peptide chain release factor 1 (RF-1) [Erwinia billingiae Eb661] Length = 360 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + D + L+ EYA ++ + + Q + + Sbjct: 8 KLEALQERHEEVEAMLGDAGVIADQDRFRALSREYAQLTDVSQCFRRWQQNQDDIAAAEE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+RD+AQ E+ +LE E+ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDPEMRDMAQEELKDARATSEQLEQELQVLLLPKDPDDERNCYLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WK+E++S++D + GGYKE++A + G G + R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAETRRWKIEIMSTNDGEHGGYKEVIAKVIGDGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVA++PE E ++ +I D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAIMPELPEAEMPEINAGDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR+ E R+ E ++ R+ +G+GDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIRAAETARLHQEEASTRRNLLGTGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYN+ QGRITDHRINLTLY+L+ +QG +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNYPQGRITDHRINLTLYRLDEAMQGKLDMLIEPIVQEYQADQLAALS 357 >gi|262369773|ref|ZP_06063101.1| peptide chain release factor 1 [Acinetobacter johnsonii SH046] gi|262315841|gb|EEY96880.1| peptide chain release factor 1 [Acinetobacter johnsonii SH046] Length = 362 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 240/362 (66%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + +L+ E++ +S I + Y Q + Sbjct: 1 MKESLRLRLDQLSDRHEELTALLADVEVISDNKRFRQLSREHSDLSEITEVWTKYKQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ SD + +++A E+ + I LE ++N L++PKD +D S LEIR Sbjct: 61 DIETAEAML----SDPDFKEMAVEEIKENKAIIASLEADLNILMIPKDPNDANSAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDL+RMY +YA + W++EVLS ++ + GGYKEI+ ++G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLYRMYTKYAESQGWRIEVLSENEGEHGGYKEIICLVNGEGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTTVEINASDLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLASRLESAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ V++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAVMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|225010612|ref|ZP_03701082.1| peptide chain release factor 1 [Flavobacteria bacterium MS024-3C] gi|225005165|gb|EEG43117.1| peptide chain release factor 1 [Flavobacteria bacterium MS024-3C] Length = 358 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 160/357 (44%), Positives = 232/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + Y++L +EY + ++ K +Y ++ Sbjct: 1 MLEKLHVVKQRFDEVSDLIIQPDIIQDQKRYVQLNKEYKDLKSLMDKRELYISFTNNIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A++++ + + LE EI +LL+PK+ +D K+ ++EIRAGTG Sbjct: 61 SQEII-DDGSDAEMVEMAKMQLDEAKAALPALEEEIKFLLIPKEPEDAKNVVVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y R WK V+ S+ GGYKEI ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCESRGWKTNVIDLSEGTSGGYKEIQFEVNGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQIDPKDVRIDFFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++ +KSQH+N+ +A VLR+RLYD+E + +A R Q+ SG Sbjct: 240 SAVRLTHLPTGLVAQCQDQKSQHKNKDKAFVVLRSRLYDMELAKKQEADAAKRNSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRI LTLY L+ ++ G I I++ L+ + + ASE Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNIVNGDIQKILSELMLVDNTEKLKEASE 356 >gi|307706536|ref|ZP_07643343.1| peptide chain release factor 1 [Streptococcus mitis SK321] gi|307617991|gb|EFN97151.1| peptide chain release factor 1 [Streptococcus mitis SK321] Length = 359 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASSRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLIMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ D+ +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDLDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|238797830|ref|ZP_04641323.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969] gi|238718358|gb|EEQ10181.1| Peptide chain release factor 1 [Yersinia mollaretii ATCC 43969] Length = 360 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTNCFKEWRSTQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDLEMREMAQEELKEAKARSEELEQQLQLLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG G F ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGEGAFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG++V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|295100871|emb|CBK98416.1| bacterial peptide chain release factor 1 (bRF-1) [Faecalibacterium prausnitzii L2-6] Length = 361 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 234/354 (66%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ + RF E+ +R+++ + +L +EY P++ + Sbjct: 7 QMEAVCRRFEELSIRLNQPETAADPAQLRRLMQEYHEAQPVVDAYHALTTAQDHLAQAKA 66 Query: 65 VIG-DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D++ + + Q E+ +++ ELEN + LLLPKD +D+KS I+EIRAG GG Sbjct: 67 LLEGDEPLDADFKAMVQQELSEKSQDVAELENNLKILLLPKDANDEKSVIMEIRAGAGGE 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L RMY Y R W++E+L+ ++ + GG KE V ++GRG ++R+K+ESGVH Sbjct: 127 EAALFAHSLVRMYTMYVQSRGWEMELLNLNETELGGTKEAVFAVNGRGAYNRLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTS ATVAV+P+A E+D + ++D+RIDT R+SG+GGQH+N T SA Sbjct: 187 RVQRVPETETQGRIHTSTATVAVMPQAEEVDFALDMKDLRIDTFRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+THIPTG +V +E+SQ QN+ +A+++LR+RL ++K + +A+R Q+G+GDR Sbjct: 247 IRVTHIPTGTVVECQNERSQFQNKDKALEILRSRLLAQKQKEQQDAINADRAGQVGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R TDHRI LT++ L+ ++ G +DDII+ L T QA+ + + Sbjct: 307 SEKIRTYNFPQDRCTDHRIGLTVHNLDKIMDGDLDDIIDALATREQAERLQKLN 360 >gi|169633250|ref|YP_001706986.1| peptide chain release factor 1 [Acinetobacter baumannii SDF] gi|184158674|ref|YP_001847013.1| peptide chain release factor 1 [Acinetobacter baumannii ACICU] gi|239501457|ref|ZP_04660767.1| peptide chain release factor 1 [Acinetobacter baumannii AB900] gi|260554585|ref|ZP_05826806.1| peptide chain release factor 1 [Acinetobacter baumannii ATCC 19606] gi|332874369|ref|ZP_08442280.1| peptide chain release factor 1 [Acinetobacter baumannii 6014059] gi|238685536|sp|A3M6N7|RF1_ACIBT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238688133|sp|B0VM26|RF1_ACIBS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238690970|sp|B2HU82|RF1_ACIBC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169152042|emb|CAP00926.1| peptide chain release factor 1 [Acinetobacter baumannii] gi|183210268|gb|ACC57666.1| Protein chain release factor A [Acinetobacter baumannii ACICU] gi|193077723|gb|ABO12581.2| peptide chain release factor 1 [Acinetobacter baumannii ATCC 17978] gi|260411127|gb|EEX04424.1| peptide chain release factor 1 [Acinetobacter baumannii ATCC 19606] gi|322507515|gb|ADX02969.1| prfA [Acinetobacter baumannii 1656-2] gi|323518589|gb|ADX92970.1| peptide chain release factor 1 [Acinetobacter baumannii TCDC-AB0715] gi|332737448|gb|EGJ68364.1| peptide chain release factor 1 [Acinetobacter baumannii 6014059] Length = 362 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 245/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKALLEELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAESQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|319893069|ref|YP_004149944.1| Peptide chain release factor 1 [Staphylococcus pseudintermedius HKU10-03] gi|317162765|gb|ADV06308.1| Peptide chain release factor 1 [Staphylococcus pseudintermedius HKU10-03] Length = 358 Score = 272 bits (695), Expect = 7e-71, Method: Composition-based stats. Identities = 160/353 (45%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V K ++E + + + Y Q K++ +++ Sbjct: 3 DQLDIVEERYEQLNELLSDPEVVSDSNLLRKYSKEQSELQKTVEVYRQYKQVKEDAEEIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D++ ++ + E A++ E+ ELE ++ LL+PKD +D+K I+EIR GG Sbjct: 63 LMLAET-DDADEVEMLKEEASALKAEVPELEEQLKLLLIPKDPNDEKDVIVEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++A ++K+E++ ++++D GGYKEI ++SG G +S++K+E+G H Sbjct: 122 EAAIFAGDLFRMYSKFAESHRFKLEIVEATESDHGGYKEISFSVSGDGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL+ +++G +D+I++ L Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIVDALTMHEQTEKLKELN 354 >gi|330719389|ref|ZP_08313989.1| peptide chain release factor 1 [Leuconostoc fallax KCTC 3537] Length = 359 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 150/357 (42%), Positives = 226/357 (63%), Gaps = 10/357 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ + +R E+ +++ + Y+ L++E +I ++ Y Q+ QD Sbjct: 6 EQLQTVVDRHDELNELLADPEVMSDSKRYMALSKEEGSIRETVTVFKQYQSVLQDIQDAE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D+++ +LA+ ++ ++ + LE ++ L+LP+D +DDK+ I+EIR GG Sbjct: 66 DLL----DDTDMAELARDDLKTLKPQKASLEEQLKVLMLPQDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E++LF DL MY +YA + W + ++ S + GGYKE+V I+G V+S++KFESG H Sbjct: 122 ESSLFAADLLDMYRKYAEKQNWHINLIDESATEVGGYKEVVVMITGNNVYSKLKFESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEID--VDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQRVP TE GRVHTS ATV V+PE ++D I +D+R D R+SG+GGQHVN T Sbjct: 182 RVQRVPVTETQGRVHTSTATVGVMPEFEDVDATDLIDPKDVREDVYRSSGAGGQHVNKTS 241 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+R+TH PTGI V E+SQ QNR +A K+L AR+YD ++ E + RK +G+G Sbjct: 242 SAIRLTHEPTGITVAMQDERSQQQNRAKAWKILNARVYDYFAQQNEAEYAQKRKTAVGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF Q R+TDHRI LTL KL+ V+ G ++DII+ L+ A Q + ++ Sbjct: 302 DRSERIRTYNFPQNRVTDHRIGLTLNKLDRVMNGELEDIIDALIIADQTAKLADLNQ 358 >gi|53712203|ref|YP_098195.1| peptide chain release factor 1 [Bacteroides fragilis YCH46] gi|60680383|ref|YP_210527.1| peptide chain release factor 1 [Bacteroides fragilis NCTC 9343] gi|253563758|ref|ZP_04841215.1| peptide chain release factor 1 [Bacteroides sp. 3_2_5] gi|265765536|ref|ZP_06093811.1| peptide chain release factor 1 [Bacteroides sp. 2_1_16] gi|61214601|sp|Q64XW5|RF1_BACFR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|81316547|sp|Q5LH11|RF1_BACFN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52215068|dbj|BAD47661.1| peptide chain release factor 1 [Bacteroides fragilis YCH46] gi|60491817|emb|CAH06575.1| putative peptide chain release factor 1 [Bacteroides fragilis NCTC 9343] gi|251947534|gb|EES87816.1| peptide chain release factor 1 [Bacteroides sp. 3_2_5] gi|263254920|gb|EEZ26354.1| peptide chain release factor 1 [Bacteroides sp. 2_1_16] gi|301161917|emb|CBW21461.1| putative peptide chain release factor 1 [Bacteroides fragilis 638R] Length = 370 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYMQLLANIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+++R++A+ E+ ++ + LE EI LL+P D D K+ ILEIR GTGG Sbjct: 69 DILS-NESDADMREMAKEEMDNSQERLPVLEEEIKLLLVPADPQDGKNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV S+++ GGYKEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSSANEGAAGGYKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGVAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I + I+ L A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQECIDKLTVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|258406203|ref|YP_003198945.1| peptide chain release factor 1 [Desulfohalobium retbaense DSM 5692] gi|257798430|gb|ACV69367.1| peptide chain release factor 1 [Desulfohalobium retbaense DSM 5692] Length = 356 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 189/354 (53%), Positives = 250/354 (70%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ R+AEIE +S S + Y +L + +A + IIS Y + ++ Sbjct: 4 KLDSIEERYAEIEQELSSSDVLQDQQRYAELAKAHADLGEIISVYREYKEVLTGIEENQD 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 V+ D D E+R+LA+ E+ A+E EL + LLLPKD DDK+ ILEIRAGTGG E Sbjct: 64 VLSD--GDQELRELAKEELSALETRQEELHARLQKLLLPKDPMDDKNIILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALFV DL RMY RYA WKVE+++S GG KE++A+ISG V+SR+K+ESGVHR Sbjct: 122 AALFVADLLRMYTRYAETMHWKVELMNSHPTGSGGMKEVIASISGASVYSRLKYESGVHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP+TE+ GR+HTSA TVA+LPEA E+DV+I ++RID RASG GGQ VNTTDSAV Sbjct: 182 VQRVPSTESQGRIHTSAVTVAILPEAEEVDVEIDPSELRIDYFRASGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIP+G++V EKSQH+N+ +AMKVLR+R+ +++ E A+R+ Q+GSGDRS Sbjct: 242 RITHIPSGVVVSCQDEKSQHKNKAKAMKVLRSRILKAKQEEAKKELDASRRSQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGRITDHRINLTLY LE VL G +D++I PL+ QA+ + + +E Sbjct: 302 ERIRTYNFPQGRITDHRINLTLYSLENVLAGNMDEVIEPLVQHDQAEALRAQAE 355 >gi|160940109|ref|ZP_02087454.1| hypothetical protein CLOBOL_04998 [Clostridium bolteae ATCC BAA-613] gi|158436689|gb|EDP14456.1| hypothetical protein CLOBOL_04998 [Clostridium bolteae ATCC BAA-613] Length = 358 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 256/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ L + + + +L +E A ++PI+ Y Q KQ+ +D Sbjct: 3 DKLDDMLIHYEELMLMLGDPDVTQDTKRFTRLMKEQADLAPIVEAYKQYKQAKQDVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++A+ E+ K I +LE+E+ LLLPKD +DDK+ ILEIRAG GG Sbjct: 63 ALLEEESD-EEMREMAKEELSDARKRIEDLEHELKILLLPKDPNDDKNIILEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA ++WKVE++S ++N GG+KE+VA ++G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYSNYADSQRWKVEIVSLNENGIGGFKEVVAMVTGKGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA E+DV I + D RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEEVDVQIDMNDCRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDIELEKRQSSEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++++ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDSIMNGDIQELLDNLIAADQAAKLARMNE 356 >gi|184154903|ref|YP_001843243.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956] gi|238692951|sp|B2GAT1|RF1_LACF3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|183226247|dbj|BAG26763.1| peptide chain release factor 1 [Lactobacillus fermentum IFO 3956] Length = 360 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 155/353 (43%), Positives = 243/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Q +D Sbjct: 6 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDT 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD ++ ++ + E+ ++ +L++E+ LL+PKD +DDK+ I+EIR GG Sbjct: 66 EMLREE-SDPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + W VEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 125 EASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE++GRVHTS ATV V+PEA ++DVD+ +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD +++ +E A RK IG+GDR Sbjct: 245 VRMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +++II L+ A QA+ + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLEEIIESLIIADQAQKLEQL 357 >gi|166710803|ref|ZP_02242010.1| peptide chain release factor 1 [Xanthomonas oryzae pv. oryzicola BLS256] Length = 361 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 169/363 (46%), Positives = 245/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVNNNDKFRTLSRELSQLEPVAVALEDEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + EL+ ++ LL+P+D DD + LE+R Sbjct: 61 DLSAAEAM----RTDPEMRELAEEEIAAAQARLEELDTQLASLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++ EA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIAEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L D ER + A ++ RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLLDTERSKAAAAQAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|205352556|ref|YP_002226357.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|238690491|sp|B5R924|RF1_SALG2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|205272337|emb|CAR37217.1| Peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627616|gb|EGE33959.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 360 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 249/355 (70%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ H A ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHLADLLAALSE 358 >gi|168334105|ref|ZP_02692318.1| peptide chain release factor 1 [Epulopiscium sp. 'N.t. morphotype B'] Length = 356 Score = 272 bits (694), Expect = 7e-71, Method: Composition-based stats. Identities = 163/352 (46%), Positives = 238/352 (67%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 QI +L +F I +++E + + L +E + +SPI+ K Y D Sbjct: 3 DQIKELVVKFENISAKVNEPAVIADQVTWRALMKEISTLSPIVEKYKEYKTVLTAIDDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++ L + E+ +K + LE E+ LLLP D +D+K+ I+EIR G GG Sbjct: 63 LMLEEKLDD-DMLALVKEELSDNKKRVEPLEEELKILLLPTDPNDEKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL+RMY R+A KWK E++ ++N GG+KE + + G G +SR+K+ESGVH Sbjct: 122 EAALFAADLYRMYHRFAERSKWKTELMDINENGIGGFKEAIFMLKGDGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS TVA++PEA ++DV++ D+++D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPDTESSGRIHTSTVTVAIMPEAEDVDVEVNPNDVKVDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V EKSQ +N+ +AMKVLRA+LY++E + +A +K Q+G+GDR Sbjct: 242 VRLTHLPTGIVVSCQDEKSQLKNKDKAMKVLRAKLYELELNKQKALIAAEKKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF QGR+TDHR+ LT++KLE VL G +++II+ L T Q + + + Sbjct: 302 SERIRTYNFPQGRVTDHRVGLTVHKLEQVLDGDLEEIISTLTTFDQTEKLKN 353 >gi|120612308|ref|YP_971986.1| peptide chain release factor 1 [Acidovorax citrulli AAC00-1] gi|166223521|sp|A1TTC4|RF1_ACIAC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120590772|gb|ABM34212.1| bacterial peptide chain release factor 1 (bRF-1) [Acidovorax citrulli AAC00-1] Length = 360 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 166/361 (45%), Positives = 238/361 (65%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ + + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLEELDFLLSREDIMSDMAQYRTISREHAEVTQVAGRYTRYRQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ D+A+ E+ A E E+ +LE+E+ LLLP+D D+ ++ LEIR Sbjct: 61 DLAGAREML----DDPDMADMAREEIAAAEAELVQLEDELQRLLLPRDPDEARNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA WKVE+LS+SDN+ GGYKE+V + G GV+ ++ Sbjct: 117 AGTGGDESALFAGDLARMYTRYAATAGWKVEILSASDNEIGGYKEVVLRVEGDGVYGALR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEQQAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + +++ L A +A+++ Sbjct: 297 LVGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGEVLEALRHAREAELLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|297588765|ref|ZP_06947408.1| peptide chain release factor RF1 [Finegoldia magna ATCC 53516] gi|297574138|gb|EFH92859.1| peptide chain release factor RF1 [Finegoldia magna ATCC 53516] Length = 355 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 249/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + + ++F ++E+++++ + + + KL +E+A + P+++K Y + ++ Sbjct: 3 ENLDSVVDKFKDLEVKVADPEVIADMENWTKLMKEHADLEPVVNKYLSYKDNLKNLEEDK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G DSE+ +L + E+ +E++I + + ++ LLLPKD +D+K+ +EIRAG GG Sbjct: 63 EMLG-TTGDSEMEELLKDEISTLEEQIEKDQEDLKILLLPKDPNDEKNVFIEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF G+L RMY+ Y+ ++W E++ GG KE+V + G+G +SR+K+ESGVH Sbjct: 122 EAGLFAGELLRMYQMYSDKKRWTTEIMDIQQQGVGGIKEVVMMVKGKGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA ++DV I +D+RID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++V EKSQ +N+ +AMKVL++RLYD+ + +R+ RK Q+G+GDR Sbjct: 242 VRITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLYDLMEEEKNKDRADARKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGRITDHRIN T+++L+ L G I+++I+ L + QA+ + + Sbjct: 302 SERIRTYNFPQGRITDHRINKTIFQLQNFLDGDIEEMIDDLTSYDQAEKLKMMN 355 >gi|256850891|ref|ZP_05556280.1| peptide chain release factor 1 [Lactobacillus jensenii 27-2-CHN] gi|260661105|ref|ZP_05862019.1| peptide chain release factor 1 [Lactobacillus jensenii 115-3-CHN] gi|282934197|ref|ZP_06339475.1| peptide chain release factor 1 [Lactobacillus jensenii 208-1] gi|297205768|ref|ZP_06923163.1| peptide chain release factor RF1 [Lactobacillus jensenii JV-V16] gi|256615953|gb|EEU21141.1| peptide chain release factor 1 [Lactobacillus jensenii 27-2-CHN] gi|260548042|gb|EEX24018.1| peptide chain release factor 1 [Lactobacillus jensenii 115-3-CHN] gi|281301811|gb|EFA94077.1| peptide chain release factor 1 [Lactobacillus jensenii 208-1] gi|297148894|gb|EFH29192.1| peptide chain release factor RF1 [Lactobacillus jensenii JV-V16] Length = 362 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 158/354 (44%), Positives = 240/354 (67%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L R+ EI+ M++ ++ Y+++++E A + ++ K Y + ++ D Sbjct: 7 QLEGLVARYEEIQELMADPEVINDTKRYMEISKEEADMREVVQKYRKYQEDQKTISDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I ++ SD ++ ++A+ E +EKE+ ELE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 II-ENESDEDLVEMAKEENSDLEKEVAELEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WK+ V+ + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAETQGWKISVIDEETTEVGGYKHVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNQASYDEKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II+ L+ +Q K + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIISALIVHYQTKQLEELAE 359 >gi|196229467|ref|ZP_03128332.1| peptide chain release factor 1 [Chthoniobacter flavus Ellin428] gi|196226699|gb|EDY21204.1| peptide chain release factor 1 [Chthoniobacter flavus Ellin428] Length = 360 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 155/351 (44%), Positives = 228/351 (64%), Gaps = 6/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I RF E+E +S S D K E+ + +++ ++ + + + + Sbjct: 7 ISKKAERFRELEAEISSSNLYDDPRKARETLREHTRLKELLANWETLNKTRAQLTENQDL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D E+ ++A +E+ +EK I + E + + LLP D ++D+ I+EIR GTGG EA Sbjct: 67 AK--GEDKEMAEMAAMEIPDLEKRIADTETAVQFALLPPDPNEDRDAIVEIRGGTGGDEA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF DL+RMY R+A +K+E L +S + GG KE++ ++G VF +++ESGVHRV Sbjct: 125 ALFAADLYRMYTRFAETHGFKLEPLEASVGELGGMKEVIFKVTGDQVFRTLRYESGVHRV 184 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATEA GR+HTS ATVAVLPEA E+D+++ ++IRI+ RA G GGQ VNTTDSAV+ Sbjct: 185 QRVPATEAQGRIHTSTATVAVLPEAEEVDLELKADEIRIEVCRAGGPGGQGVNTTDSAVQ 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + HIPTG +V +SQ +N+ +A+ +LR+RL +V+++ A + +A RK QIG+GDRSE Sbjct: 245 VMHIPTGTIVRCQDGRSQQKNKEKALTILRSRLLEVKQREEAEKYAAQRKGQIGTGDRSE 304 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +IRTYNF Q R+TDHRINLTLY L+ ++G ID++I L A + + A Sbjct: 305 KIRTYNFPQNRVTDHRINLTLYNLDSFIEGNIDEMIGSLQAADMQERLAEA 355 >gi|310767482|gb|ADP12432.1| peptide chain release factor 1 [Erwinia sp. Ejp617] Length = 360 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + + L+ EYA ++ + + Q +++ Sbjct: 8 KLEALQERHEEVEALLGDAGVIADQERFRALSREYAQLTDVSRCFRQWQQCQEDMATAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++G D+E+R++AQ E+ A EL+ ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 MLG----DAEMREMAQEELQAARAASDELQQQLQVLLLPKDPDDERNCYLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S+++ + GGYKE++A + G G + R+KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWKVEVMSANEGEHGGYKEVIAKVIGEGAYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPELPEAELPDINPSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E R E S+ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALGVLGSRIRAAEMARRQQEESSTRRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + S Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTIYRLDEAMEGKLDALIEPIVQEYQADQLAALS 357 >gi|257870909|ref|ZP_05650562.1| peptide chain release factor 1 [Enterococcus gallinarum EG2] gi|257805073|gb|EEV33895.1| peptide chain release factor 1 [Enterococcus gallinarum EG2] Length = 357 Score = 272 bits (694), Expect = 8e-71, Method: Composition-based stats. Identities = 167/353 (47%), Positives = 242/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y + + +D Sbjct: 3 DQLQAIEDRYEELGELLSDPAVISDTKRFMQLSKEEANTRETVEVYRRYKEVVEGIKDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ N D+E+ ++A+ E+ ++KE LE+ I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLGE-NLDAEMAEMAKEELSDLKKEKDVLEDRIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WKVEV+ ++ GGYKE++ ISG V+S++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAETQGWKVEVMDANVTGIGGYKEVIMMISGENVYSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++DI +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIDIADKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMKVLRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQLKNREKAMKVLRARVYDQIQQEARSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIIDALIMYDQTSKLEEM 354 >gi|238756935|ref|ZP_04618123.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236] gi|238704765|gb|EEP97294.1| Peptide chain release factor 1 [Yersinia aldovae ATCC 35236] Length = 360 Score = 272 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 171/362 (47%), Positives = 246/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAHLGDASVIADQDRFRALSREYAQLTDVTHCFKEWRSMQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIDAAEMMLE----DPEMREMAQEELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+SD + GGYKE++A +SG GV+ ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASDGEHGGYKEVIAKVSGDGVYGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAVASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|169824785|ref|YP_001692396.1| peptide chain release factor 1 [Finegoldia magna ATCC 29328] gi|303235021|ref|ZP_07321645.1| peptide chain release factor 1 [Finegoldia magna BVS033A4] gi|238687758|sp|B0S2B6|RF1_FINM2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167831590|dbj|BAG08506.1| bacterial peptide chain release factor 1 [Finegoldia magna ATCC 29328] gi|302493876|gb|EFL53658.1| peptide chain release factor 1 [Finegoldia magna BVS033A4] Length = 355 Score = 272 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 164/354 (46%), Positives = 248/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + + ++F ++E+++++ + + + KL +E+A + P+++K Y + ++ Sbjct: 3 ENLDSVVDKFKDLEVKVADPEVIADMENWTKLMKEHADLEPVVNKYLSYKDNLKNLEEDK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G DSE+ +L + E+ +E++I + + E+ LLLPKD +D+K+ +EIRAG GG Sbjct: 63 ELLG-TTGDSEMEELLKDEISTLEEQIEKDQEELKILLLPKDPNDEKNVFIEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF G+L RMY+ Y+ + W E++ GG KE+V + G+G +SR+K+ESGVH Sbjct: 122 EAGLFAGELLRMYQMYSDKKHWTTEIMDIQQQGVGGIKEVVMMVKGKGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA ++DV I +D+RID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++V EKSQ +N+ +AMKVL++RLYD+ + +R+ RK Q+G+GDR Sbjct: 242 VRITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLYDLMEEEKNKDRADARKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGRITDHRIN T+++L+ L G I+++I+ L + QA+ + + Sbjct: 302 SERIRTYNFPQGRITDHRINKTIFQLQNFLDGDIEEMIDDLTSYDQAEKLKMMN 355 >gi|255007722|ref|ZP_05279848.1| peptide chain release factor 1 [Bacteroides fragilis 3_1_12] gi|313145421|ref|ZP_07807614.1| peptide chain release factor 1 [Bacteroides fragilis 3_1_12] gi|313134188|gb|EFR51548.1| peptide chain release factor 1 [Bacteroides fragilis 3_1_12] Length = 370 Score = 272 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 147/362 (40%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E+ +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEEVSTLITDPAVIADQKRYVKLTKEYKDLDDLMKARKEYMQLLANIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+++R++A+ E+ ++ + LE EI LL+P D D K+ ILEIR GTGG Sbjct: 69 DILS-NESDTDMREMAKEEMDNSQERLPVLEEEIKLLLVPADPQDGKNAILEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV S+++ GGYKEI+ +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSSANEGAAGGYKEIICSVTGDNVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGVAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I + I+ L A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQECIDKLTVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|301299965|ref|ZP_07206192.1| peptide chain release factor 1 [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852447|gb|EFK80104.1| peptide chain release factor 1 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 360 Score = 272 bits (694), Expect = 9e-71, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 235/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L++R+ E+ +S+ + + KL++E + + K + Y + Q+ D Sbjct: 6 DRLQMLEDRYEELGELLSDPDVISDTKRFTKLSKEMVDLRETVEKYNKYKEVTQQISDDE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ L + E+ + E +LE EI LLLPKD +DDK+ I+EIR GG Sbjct: 66 EMLSDGLDD-EMASLVKEELSNAKNEKVKLEEEIKILLLPKDPNDDKNIIMEIRGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W +EV+ + + GG+KEI I+G V+S++K+ESG H Sbjct: 125 EASLFAADLFSMYSKYAERQGWSIEVIDKNVTEVGGFKEIALIINGNSVWSKLKYESGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GRVHTS ATV V+PE ++++++ +DIR+D R+SG+GGQH+N T SA Sbjct: 185 RVQRIPVTESAGRVHTSTATVVVMPEEEDVEIELDPKDIRVDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQ QNR +AMK+L+AR+YD ++ +E ANRK +G+GDR Sbjct: 245 VRMTHLPTGIVVAMQDQRSQQQNREKAMKILKARVYDYYAQQEQSEYDANRKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G ++D+I+ L+ Q K + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELEDVIDALVLFEQTKAMEKLE 358 >gi|295094043|emb|CBK83134.1| bacterial peptide chain release factor 1 (bRF-1) [Coprococcus sp. ART55/1] Length = 358 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 252/355 (70%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +L ++ I ++++ V + + KL +E + +SPI+ K Y K +D Sbjct: 3 DRLEELVDKLDTINNQLTDPDVVSDQNKFRKLMKEQSDLSPIVEKYHEYKDAKTTIEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 I + SD E+R++A+ E+ + + +E E+ LLLPKD +D K+ I+EIRAG GG Sbjct: 63 E-ILEEESDEELREMAKEEMNEAKANLETIEQELKILLLPKDPNDSKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY++Y KWKVE++S ++N GG+KE V I+G G +S+MK+ESGVH Sbjct: 122 EAALFAYEVYRMYQKYVDQFKWKVELMSVNENGIGGFKEAVFMITGDGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS TVAV+PEA E+DV+I DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRIPKTESGGRIHTSTITVAVMPEAEEVDVEINENDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ + +EKSQ QN+ +A +LR++LYD+E ++ + +A+R+ QIG+GDR Sbjct: 242 VRLTHIPTGIVIYSQTEKSQLQNKAKAFALLRSKLYDMELQKQHDAEAADRRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF +GR+TDHRI LTLYKL+ ++ G ++++I+ L+ A Q + +E Sbjct: 302 SEKIRTYNFPEGRVTDHRIKLTLYKLDQIMNGDLNELIDSLIAADQTAKLAQVNE 356 >gi|198276935|ref|ZP_03209466.1| hypothetical protein BACPLE_03140 [Bacteroides plebeius DSM 17135] gi|198270460|gb|EDY94730.1| hypothetical protein BACPLE_03140 [Bacteroides plebeius DSM 17135] Length = 369 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 228/362 (62%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L +RF E+ +++ + Y+KLT+EY + +++ Y Q ++ Sbjct: 9 EKLEGLVSRFEEVSTLITDPNVIADQKRYVKLTKEYKELGDLMAARKEYLQCINGLEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A+ E + E I ELE EI LL+P D DD++ ILEIR GTGG Sbjct: 69 MMMSE--NDPEMKEMAREEAASCEARIPELEEEIKLLLVPADPQDDRNAILEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY +Y + WK+EV S+++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 127 EAAIFAGDLFRMYSKYCESKGWKLEVSSANEGAAGGFKEIICSVTGEKVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRVHTSAASVAVLPEAEPFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 247 VRLRYNWKNPNTGIVEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDIASKRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 307 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 366 Query: 355 AS 356 + Sbjct: 367 SE 368 >gi|37525987|ref|NP_929331.1| peptide chain release factor 1 [Photorhabdus luminescens subsp. laumondii TTO1] gi|46576710|sp|Q7N586|RF1_PHOLL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|36785417|emb|CAE14363.1| Peptide chain release factor 1 (RF-1) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 360 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 246/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+ + ++ + + L+ EYA ++ + + + + + + Sbjct: 8 KLEALQERHEEVLAHLGDADVIADQERFRALSREYAQLTDVTNCFKAWSAVQDDLKAAEI 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEEIRDAKVRNEELEQQLQLLLLPKDPDDERNCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S++D + GGYKEI+A +SG V+ +KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAESRRWKVEVISANDGEHGGYKEIIAKVSGEQVYGHLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAVLPE + + +I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVLPEIPDAELPEISPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ +GSGDR Sbjct: 244 IRITHIPTGIVVECQDERSQHKNKAKAMSVLAARIRAAEVRKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D ++ P++ +QA ++ + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVIEGKLDMLVQPIVNEYQADLLSALSE 358 >gi|51473710|ref|YP_067467.1| peptide chain release factor 1 [Rickettsia typhi str. Wilmington] gi|61214605|sp|Q68WK7|RF1_RICTY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|51460022|gb|AAU03985.1| peptide chain release factor 1 (RF-1) [Rickettsia typhi str. Wilmington] Length = 355 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 247/355 (69%), Gaps = 2/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + I+ KI Y++ K E ++ Sbjct: 1 MSFSDNLVKILDKYENLGRKLSSGIIGDEFVKASKEYAELEDIVVKIKEYNKVKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + D+ ++ E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNLRLEVALDNATLEMINNEIYILENLLPKLERAVRISLLPKDEADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA + W+ E+L+ S+ GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAEFKGWRFEILAISNTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA +D+ I +D+RIDT R+SG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEGVDIKIEDKDLRIDTYRSSGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRARLY+ +R++ ERS +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARLYEEKRRQKEQERSDSRRWQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQ-GYIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF GR++DHRINLTLYK++ V++ G +D+ I L+ +AK + Sbjct: 301 RSERIRTYNFLHGRVSDHRINLTLYKIDEVVKHGQLDEFIEALIANDEAKKLSEL 355 >gi|86140561|ref|ZP_01059120.1| peptide chain release factor 1 [Leeuwenhoekiella blandensis MED217] gi|85832503|gb|EAQ50952.1| peptide chain release factor 1 [Leeuwenhoekiella blandensis MED217] Length = 360 Score = 271 bits (693), Expect = 9e-71, Method: Composition-based stats. Identities = 154/359 (42%), Positives = 230/359 (64%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 L +++ +K RF E+ + + + Y++L +EY + ++ + Y + Q Sbjct: 1 MLMLERLNFIKQRFDEVSDLIIQPDIISDQKRYVELNKEYKDLRALMDERENYIKHTQRI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ +I D SD E+ ++A++++ ++ + LE +I ++L+PKD +D K+ ++EIRAG Sbjct: 61 EEAEEIIAD-GSDPEMTEMAKLQLEEAKEAMPALEEKIRFMLVPKDPEDAKNAVMEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA++F GDL+RMY +Y + W+ + S+ GGYKEI ++G V+ ++FE Sbjct: 120 TGGDEASIFAGDLYRMYMKYCESKGWRTSTIDYSEGTSGGYKEIQVEVTGEDVYGTLRFE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +GVHRVQRVP TE GRVHTSAATV V PEA E DV+I +D+RID +SG GGQ VNT Sbjct: 180 AGVHRVQRVPQTETQGRVHTSAATVMVFPEAEEFDVEIDPKDVRIDYFCSSGPGGQSVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH PTG++ +KSQH+N+ +A KVLR+RLYD+E + E +A R + Sbjct: 240 TYSAVRLTHEPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDLELAKKQEEDAAKRGSMVT 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRS +IRTYN+ QGR+TDHRINLTLY L ++ G I II+ L + + + Sbjct: 300 SGDRSAKIRTYNYPQGRVTDHRINLTLYDLANIIDGDIQKIIDELQLVSNTEKLAEGGD 358 >gi|156742398|ref|YP_001432527.1| peptide chain release factor 1 [Roseiflexus castenholzii DSM 13941] gi|156233726|gb|ABU58509.1| peptide chain release factor 1 [Roseiflexus castenholzii DSM 13941] Length = 364 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 152/363 (41%), Positives = 223/363 (61%), Gaps = 8/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQ 57 M ++ + R+ E+ M++ ++L E + P++ Y ++ Sbjct: 1 MAAALIDKLASITARYDELLDLMAQPDVATDPVRLQRYAREQRELEPLVEAYRAYRDVER 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +D ++ +H +D ++R LAQ E+ + + +LE +I LLLP+D +D K+ I+E+R Sbjct: 61 QIEDTSFLL-EHETDQDVRQLAQDELDHLLERRAQLEQQIKVLLLPRDPNDSKNAIMELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG EAALF DLFRMY RYA R W +EV+S+++N GGYKEI+ + G G +SR+K Sbjct: 120 QGEGGDEAALFAADLFRMYTRYAEQRGWDIEVISATENGPGGYKEIIFEVRGEGAYSRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +E GVHRVQRVPATEA GR+HTS ATVAVLPE E D+++ D R+D R+ G GGQ V Sbjct: 180 YEGGVHRVQRVPATEARGRIHTSTATVAVLPEVEETDIELNPSDYRVDVFRSGGHGGQGV 239 Query: 238 NTTDSAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 NTTDSAVRI + P ++ +SQ +N+ A+ VLRARLY E ++ E R Sbjct: 240 NTTDSAVRIVYKPGTPEEIVVTCQDSRSQLKNKASALAVLRARLYAREEEKRRKELGETR 299 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 Q+G+G+R+E+IRTYNF Q R+TDHRI L +L G +D +I+ L+ A A+ + Sbjct: 300 LAQVGAGERAEKIRTYNFPQDRVTDHRIGQNFSNLPGILDGDLDRLIDMLIIADNAERLE 359 Query: 354 SAS 356 S + Sbjct: 360 SVA 362 >gi|322373126|ref|ZP_08047662.1| peptide chain release factor 1 [Streptococcus sp. C150] gi|321278168|gb|EFX55237.1| peptide chain release factor 1 [Streptococcus sp. C150] Length = 359 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMELSREEANTRETVTVYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D ++ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 TDAEEMIKEASGDPDLEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLNMYQKYAETQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E+D +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVDYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|229586782|ref|YP_002845283.1| peptide chain release factor 1 [Rickettsia africae ESF-5] gi|259585242|sp|C3PNN0|RF1_RICAE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|228021832|gb|ACP53540.1| Peptide chain release factor RF-1 [Rickettsia africae ESF-5] Length = 355 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 250/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + ++S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNKLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSG+ Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGN 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLLE 354 >gi|293365352|ref|ZP_06612069.1| peptide chain release factor RF1 [Streptococcus oralis ATCC 35037] gi|307703894|ref|ZP_07640835.1| peptide chain release factor 1 [Streptococcus oralis ATCC 35037] gi|291316802|gb|EFE57238.1| peptide chain release factor RF1 [Streptococcus oralis ATCC 35037] gi|307622729|gb|EFO01725.1| peptide chain release factor 1 [Streptococcus oralis ATCC 35037] Length = 359 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D ++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDVDLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|310779238|ref|YP_003967571.1| bacterial peptide chain release factor 1 (bRF-1) [Ilyobacter polytropus DSM 2926] gi|309748561|gb|ADO83223.1| bacterial peptide chain release factor 1 (bRF-1) [Ilyobacter polytropus DSM 2926] Length = 357 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 241/354 (68%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + E+ + S + KL + I+P++ K Y + + + Sbjct: 4 KLEEVVKKHEELTGLLGSSEVIKDPKKLIEYNKALNEITPVVEKYKEYKRYSDDLEFTKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E++++ E+ IE+ + LE E+ LLLPKD +DDK+ I+EIR GTGG E Sbjct: 64 SLKVEK-DHEMKEMLLEEMRDIEEVLPGLEQELRILLLPKDPNDDKNVIIEIRGGTGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +L+RMY RYA KWK EV+S S+ GG KEIV +I G+G +S++KFESGVHR Sbjct: 123 AALFAANLYRMYCRYAERNKWKTEVMSKSEVGVGGLKEIVFSIQGQGAYSKLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+SGR+HTS ATVAVLPE + V+I +++IDT R+SG+GGQHVNTTDSA Sbjct: 183 VQRVPETESSGRIHTSTATVAVLPEVDDVEQVEIKPSELKIDTFRSSGAGGQHVNTTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+P+G++V E+SQ +NR +AMKVL +L+++E ++ +E + RKLQ+G+G R Sbjct: 243 VRITHLPSGVIVECQDERSQLKNREKAMKVLATKLFEMEIEKQRSEVESTRKLQVGTGSR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ QGRITDHRI LTL+KL+ L G + ++I+ L+T QA M+ + + Sbjct: 303 SEKIRTYNYPQGRITDHRIKLTLHKLDAFLDGDLTEMIDALITFDQADMLTNLA 356 >gi|283478591|emb|CAY74507.1| Peptide chain release factor 1 (RF-1) [Erwinia pyrifoliae DSM 12163] Length = 363 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R E+E + ++ + + L+ EYA ++ + + Q +++ Sbjct: 11 KLEALQERHEEVEALLGDAGVIADQERFRALSREYAQLTDVSRCFRQWQQCQEDMATAEM 70 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++G D+E+R++AQ E+ A EL+ ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 71 MLG----DAEMREMAQEELQAARAASDELQQQLQVLLLPKDPDDERNCYLEVRAGTGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+WKVEV+S+++ + GGYKE++A + G G + R+KFESG HR Sbjct: 127 AAIFAGDLFRMYSRYAEYRRWKVEVMSANEGEHGGYKEVIAKVIGEGAYGRLKFESGGHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 187 VQRVPETESQGRIHTSACTVAVMPELPEAELPDINPSDLKIDTFRSSGAGGQHVNTTDSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +A+ VL +R+ E R E S+ R+ +GSGDR Sbjct: 247 IRITHLPTGIVVECQDERSQHKNKAKALGVLGSRIRAAEMARRQQEESSTRRNLLGSGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S+R RTYNF QGR+TDHRINLT+Y+L+ ++G +D +I P++ +QA + + S Sbjct: 307 SDRNRTYNFPQGRVTDHRINLTIYRLDEAMEGKLDALIEPIVQEYQADQLAALS 360 >gi|260891992|ref|YP_003238089.1| peptide chain release factor 1 [Ammonifex degensii KC4] gi|260864133|gb|ACX51239.1| peptide chain release factor 1 [Ammonifex degensii KC4] Length = 355 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 183/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +L+ +F ++ L++++ + + + + +A + PI+S Y + + ++ Sbjct: 3 EKLAELETQFEDLTLKIADPEVMADQKRWREYVKRHAELEPIVSTYREYKRVLEGIEEA- 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R+LA+ E+ +++ ELE E+ LLLPKD +D+K+ ILEIRAGTGG Sbjct: 62 EMLLDQEQDEELRELAEEELETLKERREELEKELKILLLPKDPNDEKNVILEIRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL RMY RYA R WK E+LS+S D GG+KE+V I GRG +S +K+ESGVH Sbjct: 122 EAALFAADLLRMYLRYAEKRGWKTELLSASPTDLGGFKEVVVLIEGRGAYSFLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEASGR+HTSAATVAVLPEA E+DV+I +DIR+DT +SG GGQ VNTT SA Sbjct: 182 RVQRVPVTEASGRIHTSAATVAVLPEAEEVDVEIDPKDIRVDTFCSSGHGGQSVNTTYSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NR +AMKVLRARL D++R+ +A R+ Q+ SGDR Sbjct: 242 VRITHLPTGIVVTCQDERSQLKNREKAMKVLRARLLDLKRREQEAAIAAERRAQVKSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SER+RTYNF Q R+TDHRINLTLY+LE +L+G +D++I L A QA+ + S Sbjct: 302 SERVRTYNFPQNRVTDHRINLTLYRLEEILEGDLDELITALAAADQAERLRQIS 355 >gi|256848019|ref|ZP_05553463.1| peptide chain release factor 1 [Lactobacillus coleohominis 101-4-CHN] gi|256715079|gb|EEU30056.1| peptide chain release factor 1 [Lactobacillus coleohominis 101-4-CHN] Length = 362 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 154/353 (43%), Positives = 238/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K Y + Q +D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYHQYQKVTQTIKDDE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ ++ + E+ + ++E +L +E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 ELLRDTKDD-ELIEMTKEELASSKEEQDQLAHELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL+ MY YA + W VE++ ++ + GG+KEIV ISG V+S++KFE+G H Sbjct: 127 EASLFAGDLYNMYLHYAEKQGWNVEIVDKTETEVGGFKEIVLMISGDKVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE++GRVHTS ATV V+PEA ++ +D+ +DIR+D R+SG+GGQH+N T SA Sbjct: 187 RVQRIPVTESAGRVHTSTATVGVMPEAEDVQIDLDPKDIRVDVYRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD +++ + RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKARVYDYYQQKEQSAYDQKRKDAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q K + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMDGDLDEIIEALIIADQTKKLEQL 359 >gi|319790214|ref|YP_004151847.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1] gi|317114716|gb|ADU97206.1| peptide chain release factor 1 [Thermovibrio ammonificans HB-1] Length = 365 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 180/354 (50%), Positives = 249/354 (70%), Gaps = 5/354 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ + +F EIE + + + K L +E+ + PI Y + +Q ++ Sbjct: 6 ESRLEKIAKKFKEIEENLGKPEVIADQKKFQTLAKEHKELQPIYDTYMEYKKTRQGIEEA 65 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 I + + E+ +LA+ E +EK ELE E+ LL+PKD +D+K+ ILEIRAG GG Sbjct: 66 LE-IIEAGEEEELVELAKEEKKELEKRAEELEGELKKLLIPKDPNDEKNVILEIRAGAGG 124 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DLFRMY RYA + WKVE+LS ++ GG KE+VATISG+G +SR+K+ESGV Sbjct: 125 EEAALFAQDLFRMYCRYAERKGWKVEILSMNETGLGGIKEVVATISGKGAYSRLKYESGV 184 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQR+P TE+ GR+HTS ATVA+LPEA E++++I D++IDT R+SG+GGQHVNTTDS Sbjct: 185 HRVQRIPVTESGGRIHTSTATVAILPEAEEVEIEIKESDLKIDTYRSSGAGGQHVNTTDS 244 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V S+E+SQ QNR++AMK+LRARL ++ ++ + + RK Q+GSGD Sbjct: 245 AVRITHLPTGIVVTCSNERSQIQNRIKAMKILRARLKELYERQQKEKMDSARKAQVGSGD 304 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RSE+IRTYNF +GR+TDHRI LTLY L+ L G +D++I+ L A QAK I + Sbjct: 305 RSEKIRTYNFPEGRVTDHRIKLTLYNLQEFLDGDLDEMIDALAAAEQAKKIEAL 358 >gi|296113010|ref|YP_003626948.1| peptide chain release factor 1 [Moraxella catarrhalis RH4] gi|295920704|gb|ADG61055.1| peptide chain release factor 1 [Moraxella catarrhalis RH4] gi|326560389|gb|EGE10771.1| peptide chain release factor 1 [Moraxella catarrhalis 7169] gi|326561241|gb|EGE11604.1| peptide chain release factor 1 [Moraxella catarrhalis 46P47B1] gi|326564062|gb|EGE14306.1| peptide chain release factor 1 [Moraxella catarrhalis 12P80B1] gi|326565872|gb|EGE16034.1| peptide chain release factor 1 [Moraxella catarrhalis BC1] gi|326570557|gb|EGE20597.1| peptide chain release factor 1 [Moraxella catarrhalis BC8] gi|326573200|gb|EGE23169.1| peptide chain release factor 1 [Moraxella catarrhalis CO72] gi|326576112|gb|EGE26028.1| peptide chain release factor 1 [Moraxella catarrhalis 101P30B1] gi|326577062|gb|EGE26956.1| peptide chain release factor 1 [Moraxella catarrhalis O35E] Length = 359 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 170/361 (47%), Positives = 245/361 (67%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +RF E+ +S+ ++ + +L+ E++ +S I + + Q + Sbjct: 1 MKESLRHRLDQMVDRFEEVTALLSDPDTISDNKKFRELSMEHSDLSEITTTWQDFVQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + ++ SD E++++A E+ I LE +N ++LPKD +D + LEIR Sbjct: 61 DLQTANELL----SDPEMKEMALDEIEVARANIETLEERLNVMMLPKDPNDKATAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY++Y + W+VEVLS+++ + GGYKEI+A +SG GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSANEGEHGGYKEIIARVSGIGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE D +I D+RIDT R+SG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAVMPEVEIDDTVEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTG++ E+SQH N+ +AMK+L AR+ + + + S R+ Sbjct: 237 VNTTDSAVRITHIPTGVVAECQQERSQHANKEKAMKMLVARIQQAKVQAQIDATSDMRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G + ++++ LL H A ++ S Sbjct: 297 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLLREHHADLMASV 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|238751561|ref|ZP_04613052.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380] gi|238710279|gb|EEQ02506.1| Peptide chain release factor 1 [Yersinia rohdei ATCC 43380] Length = 360 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DLEAAEMMLE----DLEMREMAQEELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF R+K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAESRRWKVEIMSASEGEHGGYKEVIAKVSGEGVFGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|242280071|ref|YP_002992200.1| peptide chain release factor 1 [Desulfovibrio salexigens DSM 2638] gi|259585219|sp|C6BYQ4|RF1_DESAD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|242122965|gb|ACS80661.1| peptide chain release factor 1 [Desulfovibrio salexigens DSM 2638] Length = 357 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 177/354 (50%), Positives = 250/354 (70%), Gaps = 6/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ D++ F ++E +++ + Y K+T +A + +++ Y Q + +D Sbjct: 4 KLEDIERSFMDLEQELADPEVYNNQERYRKVTMAHAELGDVVAAFREYKQLSADLEDNKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D SD EIR++A++E+ I+ + +LE E+ LLLPKD D K+ ILEIRAGTGG E Sbjct: 64 MAKD--SDPEIREMAEMEIAEIKDRLPKLEEELKLLLLPKDPMDGKNIILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY R+A WKVEV++S+ GG+KEI+A ISG ++S MK+ESG HR Sbjct: 122 AALFAADLFRMYSRFAESNGWKVEVMNSNPTGTGGFKEIIAAISGSRIYSMMKYESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVA++PEA E+DV + ED+RID RASG GGQ VNTTDSA+ Sbjct: 182 VQRVPATETQGRIHTSAATVAIMPEAEEVDVQVRNEDLRIDVFRASGPGGQSVNTTDSAI 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG++V EKSQH+N+ +AMKVL +RL E+ + E + R+ Q+GSGDRS Sbjct: 242 RITHLPTGLVVICQDEKSQHKNKAKAMKVLCSRLLQAEQDKQHAEMAEQRRAQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYNF QGR+TDHRINLTLYKL+ V++G + +++ L++ +Q++ + ++ Sbjct: 302 ERIRTYNFPQGRVTDHRINLTLYKLDAVIEGDMQELVESLISHYQSEALKQQAQ 355 >gi|125623422|ref|YP_001031905.1| peptide chain release factor 1 [Lactococcus lactis subsp. cremoris MG1363] gi|166223566|sp|A2RIR4|RF1_LACLM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|124492230|emb|CAL97159.1| peptide chain release factor 1 (RF-1) [Lactococcus lactis subsp. cremoris MG1363] gi|300070169|gb|ADJ59569.1| peptide chain release factor 1 [Lactococcus lactis subsp. cremoris NZ9000] Length = 357 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 227/354 (64%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ + R+ E+ +S+ V +++L+ E A + ++ + Y + + D Sbjct: 3 DQLESIVGRYEELGELLSDPEVVSDTKRFMELSREEADLRDKVATYNEYKKVLETISDSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E++++ + E+ + + + LE EI LLLPKD +D K+ ILEIR GG Sbjct: 63 EMLGEGGLDDEMKEMLKEELSSAKSQKEVLEEEIKILLLPKDPNDGKNIILEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY+ ++ + WK E++ ++ GGYKE+ A ISG V+S++K+ESG H Sbjct: 123 EAALFAGDLLNMYQHFSESQGWKFEIMEANITGIGGYKEVSALISGPSVYSKLKYESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTS ATV V+PE E ++ I +D+R+D ASG+GGQ+VN +A Sbjct: 183 RVQRVPVTETQGRVHTSTATVLVMPEVEEFEMTIEQKDLRVDIYHASGAGGQNVNKVATA 242 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V E++Q +NR +A+K+L +++D ++ ++++ RK +G+GDR Sbjct: 243 VRMVHLPTGIKVEMQEERTQQKNRDKAIKLLNTKVFDYYQQIELDKQNTERKSTVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + + Sbjct: 303 SERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKMDEVIDALIVYDQTKKLEELN 356 >gi|296137058|ref|YP_003644300.1| peptide chain release factor 1 [Thiomonas intermedia K12] gi|295797180|gb|ADG31970.1| peptide chain release factor 1 [Thiomonas intermedia K12] Length = 358 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 157/352 (44%), Positives = 229/352 (65%), Gaps = 9/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ ++ R E++ ++ + + +T E A + ++ Y K + Sbjct: 1 MKPSLLDKLEQMQRRADELDALLAAPDCTADLQRFRNMTRELAELQAVVGLYVQYKAKTE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ SD ++++LAQ E+ + LE ++ LLP+D DD ++ +EIR Sbjct: 61 DLSQAESLL----SDPDMKELAQQEIQDARAALDALEAQLQVALLPRDPDDSRNVFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY RYA ++W EV+S S +D GGYKE++ ++G G + +K Sbjct: 117 AGTGGEESALFAADLLRMYARYAERKRWATEVISESPSDLGGYKEVILRVAGEGAYGLLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 +ESG HRVQRVP TE GR+HTSAATVAV+PE E + I D+RIDT RASG+GGQH Sbjct: 177 YESGGHRVQRVPKTETQGRIHTSAATVAVMPEMDEAQAIQINPSDLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITH+PTG++V E+SQH+N+ RA+ VL ARL + ER+ E +A RK Sbjct: 237 INKTDSAIRITHLPTGLVVECQDERSQHRNKARALSVLAARLAERERQSRQAEEAATRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +GSGDRS+RIRTYNF QGR+++HRINLTLYK++ +L G +D+++ L T Sbjct: 297 LVGSGDRSDRIRTYNFPQGRVSEHRINLTLYKIDAILDGDLDELLTALRTED 348 >gi|149019616|ref|ZP_01834935.1| peptide chain release factor 1 [Streptococcus pneumoniae SP23-BS72] gi|168483091|ref|ZP_02708043.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC1873-00] gi|147930991|gb|EDK81971.1| peptide chain release factor 1 [Streptococcus pneumoniae SP23-BS72] gi|172043551|gb|EDT51597.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC1873-00] gi|301799986|emb|CBW32576.1| peptide chain release factor 1 [Streptococcus pneumoniae OXC141] gi|332200609|gb|EGJ14681.1| peptide chain release factor 1 [Streptococcus pneumoniae GA41317] Length = 359 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 157/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ +LA+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEELAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|289167970|ref|YP_003446239.1| peptide chain release factor I [Streptococcus mitis B6] gi|288907537|emb|CBJ22374.1| peptide chain release factor I [Streptococcus mitis B6] Length = 359 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSETKRFMELSKEEASSRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASINGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|21910335|ref|NP_664603.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS315] gi|28895910|ref|NP_802260.1| peptide chain release factor 1 [Streptococcus pyogenes SSI-1] gi|25091126|sp|Q8K7I2|RF1_STRP3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21904531|gb|AAM79406.1| putative peptide chain release factor 1 [Streptococcus pyogenes MGAS315] gi|28811160|dbj|BAC64093.1| putative peptide chain release factor 1 [Streptococcus pyogenes SSI-1] Length = 359 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|325914250|ref|ZP_08176600.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas vesicatoria ATCC 35937] gi|325539505|gb|EGD11151.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas vesicatoria ATCC 35937] Length = 361 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 170/363 (46%), Positives = 245/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVNNNDKFRSLSRELSQLEPVAIALEDEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ A + + EL+ ++ LL+P+D DD + LE+R Sbjct: 61 DLSAAEAM----RNDPEMRELAEEEIAAAQARLDELDAQLALLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +I+ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDIEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLVEAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|114561906|ref|YP_749419.1| peptide chain release factor 1 [Shewanella frigidimarina NCIMB 400] gi|119361604|sp|Q087I4|RF1_SHEFN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114333199|gb|ABI70581.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella frigidimarina NCIMB 400] Length = 361 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 159/362 (43%), Positives = 242/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+ +S++ + D + L++EY+ + ++S + Q ++ Sbjct: 1 MKESVIRKLEGLLERNEEVLALLSDATVISDQDRFRGLSKEYSQLEDVVSSFKAFQQAQK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+R++AQ E ++ + +LE+E+ LLLP D +DD + LEIR Sbjct: 61 DFDYAKEML--EEDDLEMREMAQDEYKQSKQVLEKLEDELQVLLLPTDPNDDTNAFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDL+RMY RY +W++EV++ ++ + GG+KEI+ ISG G + ++K Sbjct: 119 AGAGGDEAAIFAGDLYRMYSRYCEANRWQMEVMNVNEGEHGGFKEIIVKISGDGAYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TV VL E E + I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRVHTSACTVVVLHEVPEAEAISINAADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIP+GI+V ++SQH+NR +AM VL AR+ VE ++ + R+ Sbjct: 239 VNKTDSAIRITHIPSGIIVECQDQRSQHKNRAQAMSVLAARIQAVEDEKRRSAEETTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYN+ QGR++DHRINLTLY+L V++G ++ +++P++ HQA M+ + Sbjct: 299 LVASGDRSERIRTYNYPQGRVSDHRINLTLYRLNEVMEGDLNVLLDPIMLEHQADMLAAL 358 Query: 356 SE 357 ++ Sbjct: 359 AD 360 >gi|281491061|ref|YP_003353041.1| peptide chain release factor 1 [Lactococcus lactis subsp. lactis KF147] gi|281374819|gb|ADA64339.1| Peptide chain release factor 1 (RF-1) [Lactococcus lactis subsp. lactis KF147] Length = 357 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 228/354 (64%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ + R+ E+ +S+ V +++L+ E A + ++ + Y + + D Sbjct: 3 DQLESIVGRYEELGELLSDPEVVSDTKRFMELSREEADLCDKVATYNDYKKVLETISDSE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D +++++ + E+ + + + LE EI LLLPKD +D K+ ILEIR GG Sbjct: 63 EMLGEGGLDDDMKEMLKEELSSAKSQKELLEEEIKILLLPKDPNDGKNIILEIRGAAGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY+ ++ + WK E++ ++ GGYKE+ A ISG V+S++K+ESG H Sbjct: 123 EAALFAGDLLNMYQHFSESQGWKFEIMEANITGIGGYKEVSALISGPSVYSKLKYESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTS ATV V+PE E ++ I +D+R+D ASG+GGQ+VN +A Sbjct: 183 RVQRVPVTETQGRVHTSTATVLVMPEVEEFEMTIDQKDLRVDIYHASGAGGQNVNKVATA 242 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V E++Q +NR +A+K+L +++D ++ ++++A RK +G+GDR Sbjct: 243 VRMVHLPTGIKVEMQEERTQQKNRDKAIKLLNTKVFDYYQQIELDKQNAERKSTVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + + Sbjct: 303 SERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKMDEVIDALIVYDQTKKLEELN 356 >gi|70725918|ref|YP_252832.1| peptide chain release factor 1 [Staphylococcus haemolyticus JCSC1435] gi|119361616|sp|Q4L7Z9|RF1_STAHJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|68446642|dbj|BAE04226.1| peptide chain release factor 1 [Staphylococcus haemolyticus JCSC1435] Length = 358 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 163/353 (46%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V+ KL ++E A + + Y KK+E ++ Sbjct: 3 DQLDIVEERYEQLNEMLSDPEIVNDSDKLRKYSKEQADLQKTVDVYRDYKSKKEEIAEID 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E ++ + E +++ I ELE ++ +LL+PKD +D+K I+EIRA GG Sbjct: 63 EMLNETE-DKEEIEMLKEESASLKSAIPELEEQLKFLLIPKDPNDEKDVIVEIRAAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDL RMY +YA + +K E++ ++++D GGYKEI ++SG G +S++KFE+G H Sbjct: 122 EAAIFAGDLLRMYSKYAESQNFKTEIVEAAESDHGGYKEISFSVSGSGAYSKLKFENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PTG++ TSSEKSQ QNR +A+KVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHLPTGVIATSSEKSQIQNREKALKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ER+RTYN+ Q R+TDHRI LTL KL+ +++G +D+II+ L + Q + + + Sbjct: 302 ERVRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIIDALTLSEQTEKLKELN 354 >gi|253583342|ref|ZP_04860540.1| peptide chain release factor RF1 [Fusobacterium varium ATCC 27725] gi|251833914|gb|EES62477.1| peptide chain release factor RF1 [Fusobacterium varium ATCC 27725] Length = 358 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 245/355 (69%), Gaps = 6/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ RF E+ + + K+ + + I+PI+ K Y + ++ + Sbjct: 4 KLEEVVKRFDELNELLGSPEVLADPKKMMECNKSLSDITPIVEKYKEYKRVIEDFDFIKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E++++ E+ +E+ I ELE E+ LLLPKD +DDK+ I+EIR G GG E Sbjct: 64 NLK-TEKDQEMKEMMHEELKELEESIPELEKELKVLLLPKDENDDKNVIIEIRGGAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF G+LFRMY RYA +KWK+E++ + GG KE+V +I+G G +SR+KFESGVHR Sbjct: 123 AALFAGNLFRMYSRYAERKKWKIEIIEKQEMGIGGIKEVVFSINGFGAYSRLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE++GRVHTS ATVAVLPE + +V I D++IDT R+ G+GGQHVN TDSA Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPRDLKIDTYRSGGAGGQHVNMTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NR +AMK L ++L+++E ++ ++ + R+LQ+G+GDR Sbjct: 243 VRITHLPTGIIVQCQDERSQLKNREKAMKHLASKLFEMECEKQRSQVESERRLQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGRITDHRI T+Y+LE L G +D++I+ L+T QA+M+ S SE Sbjct: 303 SEKIRTYNFPQGRITDHRIKFTVYQLEAFLDGDLDEMIDALITFSQAEMLSSVSE 357 >gi|15902968|ref|NP_358518.1| peptide chain release factor 1 [Streptococcus pneumoniae R6] gi|116517153|ref|YP_816384.1| peptide chain release factor 1 [Streptococcus pneumoniae D39] gi|148994243|ref|ZP_01823536.1| peptide chain release factor 1 [Streptococcus pneumoniae SP9-BS68] gi|148998842|ref|ZP_01826278.1| peptide chain release factor 1 [Streptococcus pneumoniae SP11-BS70] gi|149003880|ref|ZP_01828703.1| peptide chain release factor 1 [Streptococcus pneumoniae SP14-BS69] gi|149006296|ref|ZP_01830008.1| peptide chain release factor 1 [Streptococcus pneumoniae SP18-BS74] gi|149012959|ref|ZP_01833848.1| peptide chain release factor 1 [Streptococcus pneumoniae SP19-BS75] gi|168488841|ref|ZP_02713040.1| peptide chain release factor 1 [Streptococcus pneumoniae SP195] gi|168491915|ref|ZP_02716058.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC0288-04] gi|168494449|ref|ZP_02718592.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC3059-06] gi|168576251|ref|ZP_02722145.1| peptide chain release factor 1 [Streptococcus pneumoniae MLV-016] gi|182683968|ref|YP_001835715.1| peptide chain release factor 1 [Streptococcus pneumoniae CGSP14] gi|221231773|ref|YP_002510925.1| peptide chain release factor 1 [Streptococcus pneumoniae ATCC 700669] gi|225854521|ref|YP_002736033.1| peptide chain release factor 1 [Streptococcus pneumoniae JJA] gi|225856675|ref|YP_002738186.1| peptide chain release factor 1 [Streptococcus pneumoniae P1031] gi|225858811|ref|YP_002740321.1| peptide chain release factor 1 [Streptococcus pneumoniae 70585] gi|237650077|ref|ZP_04524329.1| peptide chain release factor 1 [Streptococcus pneumoniae CCRI 1974] gi|237822154|ref|ZP_04597999.1| peptide chain release factor 1 [Streptococcus pneumoniae CCRI 1974M2] gi|303255576|ref|ZP_07341627.1| peptide chain release factor 1 [Streptococcus pneumoniae BS455] gi|303260464|ref|ZP_07346432.1| peptide chain release factor 1 [Streptococcus pneumoniae SP-BS293] gi|303262821|ref|ZP_07348758.1| peptide chain release factor 1 [Streptococcus pneumoniae SP14-BS292] gi|303265291|ref|ZP_07351201.1| peptide chain release factor 1 [Streptococcus pneumoniae BS397] gi|303266498|ref|ZP_07352385.1| peptide chain release factor 1 [Streptococcus pneumoniae BS457] gi|303268383|ref|ZP_07354179.1| peptide chain release factor 1 [Streptococcus pneumoniae BS458] gi|307067803|ref|YP_003876769.1| protein chain release factor A [Streptococcus pneumoniae AP200] gi|307127431|ref|YP_003879462.1| peptide chain release factor 1 [Streptococcus pneumoniae 670-6B] gi|32171541|sp|Q8DPZ4|RF1_STRR6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|122278730|sp|Q04KR4|RF1_STRP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238691157|sp|B2IPH6|RF1_STRPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790899|sp|C1C6Z5|RF1_STRP7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790900|sp|B8ZPH1|RF1_STRPJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790902|sp|C1CE12|RF1_STRZJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790903|sp|C1CK98|RF1_STRZP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|15458532|gb|AAK99728.1| Peptide chain release factor I [Streptococcus pneumoniae R6] gi|116077729|gb|ABJ55449.1| peptide chain release factor 1 [Streptococcus pneumoniae D39] gi|147755269|gb|EDK62320.1| peptide chain release factor 1 [Streptococcus pneumoniae SP11-BS70] gi|147758110|gb|EDK65114.1| peptide chain release factor 1 [Streptococcus pneumoniae SP14-BS69] gi|147762073|gb|EDK69035.1| peptide chain release factor 1 [Streptococcus pneumoniae SP18-BS74] gi|147763112|gb|EDK70053.1| peptide chain release factor 1 [Streptococcus pneumoniae SP19-BS75] gi|147927384|gb|EDK78415.1| peptide chain release factor 1 [Streptococcus pneumoniae SP9-BS68] gi|182629302|gb|ACB90250.1| peptide chain release factor 1 [Streptococcus pneumoniae CGSP14] gi|183572574|gb|EDT93102.1| peptide chain release factor 1 [Streptococcus pneumoniae SP195] gi|183573754|gb|EDT94282.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC0288-04] gi|183575581|gb|EDT96109.1| peptide chain release factor 1 [Streptococcus pneumoniae CDC3059-06] gi|183577929|gb|EDT98457.1| peptide chain release factor 1 [Streptococcus pneumoniae MLV-016] gi|220674233|emb|CAR68768.1| peptide chain release factor 1 [Streptococcus pneumoniae ATCC 700669] gi|225720924|gb|ACO16778.1| peptide chain release factor 1 [Streptococcus pneumoniae 70585] gi|225723680|gb|ACO19533.1| peptide chain release factor 1 [Streptococcus pneumoniae JJA] gi|225724367|gb|ACO20219.1| peptide chain release factor 1 [Streptococcus pneumoniae P1031] gi|301794156|emb|CBW36566.1| peptide chain release factor 1 [Streptococcus pneumoniae INV104] gi|301801854|emb|CBW34572.1| peptide chain release factor 1 [Streptococcus pneumoniae INV200] gi|302597432|gb|EFL64527.1| peptide chain release factor 1 [Streptococcus pneumoniae BS455] gi|302636019|gb|EFL66517.1| peptide chain release factor 1 [Streptococcus pneumoniae SP14-BS292] gi|302638376|gb|EFL68843.1| peptide chain release factor 1 [Streptococcus pneumoniae SP-BS293] gi|302642104|gb|EFL72455.1| peptide chain release factor 1 [Streptococcus pneumoniae BS458] gi|302643949|gb|EFL74209.1| peptide chain release factor 1 [Streptococcus pneumoniae BS457] gi|302645156|gb|EFL75393.1| peptide chain release factor 1 [Streptococcus pneumoniae BS397] gi|306409340|gb|ADM84767.1| Protein chain release factor A [Streptococcus pneumoniae AP200] gi|306484493|gb|ADM91362.1| peptide chain release factor 1 [Streptococcus pneumoniae 670-6B] gi|332073352|gb|EGI83831.1| peptide chain release factor 1 [Streptococcus pneumoniae GA17570] gi|332075368|gb|EGI85837.1| peptide chain release factor 1 [Streptococcus pneumoniae GA41301] gi|332075634|gb|EGI86102.1| peptide chain release factor 1 [Streptococcus pneumoniae GA17545] gi|332202882|gb|EGJ16950.1| peptide chain release factor 1 [Streptococcus pneumoniae GA47901] Length = 359 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|251782311|ref|YP_002996613.1| peptide chain release factor 1 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390940|dbj|BAH81399.1| peptide chain release factor 1 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|323127208|gb|ADX24505.1| peptide chain release factor 1 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 359 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMALSKEEASTRDTVTTYREYKQVIQAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + DSE+ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 ADAEEMIKDASGDSELEEMAKEELKESKAAKEDYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+II+ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEIIDALVMYDQTQKLESLN 358 >gi|194468250|ref|ZP_03074236.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23] gi|194453103|gb|EDX42001.1| peptide chain release factor 1 [Lactobacillus reuteri 100-23] Length = 362 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++K ++E ++ + K + Y + Q D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKFSKEEGSLRETVEKYNQYKKVTQTISDDE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D ++ L + E+ +E +LE E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 ELLRETNDD-DLTALTKEELAEAREEQAQLEKELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + WKVEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYLRYAEKQGWKVEVVDRNETEVGGFKEIALMITGDKVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PEA ++DVDI +DIR+D R+SG+GGQHVN T SA Sbjct: 187 RVQRVPVTESAGRVHTSTATVGVMPEAEDVDVDIDPKDIRVDVYRSSGAGGQHVNKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L++R+YD +++ + RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMRILKSRVYDYYQQQEQSAYDQKRKDAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+II L+ A Q + + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLDEIIEALIVADQTQKLEQL 359 >gi|239817175|ref|YP_002946085.1| peptide chain release factor 1 [Variovorax paradoxus S110] gi|259585259|sp|C5CXW3|RF1_VARPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|239803752|gb|ACS20819.1| peptide chain release factor 1 [Variovorax paradoxus S110] Length = 362 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 168/361 (46%), Positives = 236/361 (65%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A I+ I + Y Q++ Sbjct: 1 MKTFLRHQLERYAQRLGELDFLLSREDIMSDMAQYRTISREHAEITQIAGRYERYKQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++A+ E+ A + E+ +LE E+ LLLPKD DD ++ LEIR Sbjct: 61 DIAGAAEMLE----DPDMAEMAREEIAAAQAELVQLEEELQRLLLPKDPDDARNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RY W+ EV+S S+++ GGYKE+V I+G VF R++ Sbjct: 117 AGTGGDESALFAGDLLRMYTRYCERAGWRCEVVSESESELGGYKEVVIRIAGNDVFGRLR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAVL + V I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVLAEPDETVAVQINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+ ++SQH+N+ +A++VL AR+ + +R A + +A RK Sbjct: 237 INKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIQEKDRSERAAKDAAMRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL+ +++G + D+++ L A +A+ + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLQAIMEGDLGDVLDALRAAREAEQLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|260663282|ref|ZP_05864173.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN] gi|260552134|gb|EEX25186.1| peptide chain release factor 1 [Lactobacillus fermentum 28-3-CHN] Length = 362 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 155/353 (43%), Positives = 243/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Q +D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDT 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD ++ ++ + E+ ++ +L++E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 EMLREE-SDPDLVEMTKEELNETKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + W VEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE++GRVHTS ATV V+PEA ++DVD+ +DIR+D R+SG+GGQH+N T SA Sbjct: 187 RVQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD +++ +E A RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +++II L+ A QA+ + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLEEIIESLIIADQAQKLEQL 359 >gi|302380176|ref|ZP_07268648.1| peptide chain release factor 1 [Finegoldia magna ACS-171-V-Col3] gi|302311959|gb|EFK93968.1| peptide chain release factor 1 [Finegoldia magna ACS-171-V-Col3] Length = 355 Score = 271 bits (692), Expect = 1e-70, Method: Composition-based stats. Identities = 163/354 (46%), Positives = 248/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + + ++F ++E+++++ + + + KL +E+A + P+++K Y + ++ Sbjct: 3 ENLDSVVDKFKDLEVKVADPEVIADMENWTKLMKEHADLEPVVNKYLSYKDNLKNLEEDK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G DSE+ +L + E+ +E++I + + E+ LLLPKD +D+K+ +EIRAG GG Sbjct: 63 ELLG-TTGDSEMEELLKDEISTLEEQIEKDQEELKILLLPKDPNDEKNVFIEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF G+L RMY+ Y+ + W E++ GG KE+V + G+G +SR+K+ESGVH Sbjct: 122 EAGLFAGELLRMYQMYSDKKHWTTEIMDIQQQGVGGIKEVVMMVKGKGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA ++DV I +D+RID RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPQTESSGRIHTSTATVAVLPEAEDVDVKIEQKDLRIDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++V EKSQ +N+ +AMKVL++RL+D+ + +R+ RK Q+G+GDR Sbjct: 242 VRITHIPTGLVVTCQDEKSQIKNKDKAMKVLKSRLFDLMEEEKNKDRADARKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGRITDHRIN T+++L+ L G I+++I+ L + QA+ + + Sbjct: 302 SERIRTYNFPQGRITDHRINKTIFQLQNFLDGDIEEMIDDLTSYDQAEKLKMMN 355 >gi|238792551|ref|ZP_04636184.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909] gi|238728186|gb|EEQ19707.1| Peptide chain release factor 1 [Yersinia intermedia ATCC 29909] Length = 360 Score = 271 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DLEAAEMMLE----DLEMREMAQEELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG++V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|297183691|gb|ADI19816.1| protein chain release factor a [uncultured alpha proteobacterium EB000_37G09] Length = 357 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 188/355 (52%), Positives = 251/355 (70%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + + R EIE ++S+S S+ D KL+ E A + P+ ++ + Q Sbjct: 1 MSLDQNMEKVLARREEIESQLSQSGSLSSDELTKLSRELAEVRPVAEQVFVVRHLAQALA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I + +D E+ ++A+ E+ + ++ E E+++ LLLPKDTDD ++ ILE+RAGT Sbjct: 61 DARQMIEEEGADPEMAEMAETEISELGPQLTEAEHDLKLLLLPKDTDDSRNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF MY+R A+ WK EV+ S+ GGYKE A ISG+ VF+R+KFES Sbjct: 121 GGDEAALFAADLFGMYQRTASRYGWKFEVMEISETGIGGYKEATANISGQDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPEA ++D+++ D+R+D RASG GGQ VNTT Sbjct: 181 GVHRVQRVPETETGGRIHTSAATVAVLPEAQDVDIEVSESDLRVDVFRASGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ + KSQH+NR +AMK+LRAR+YD ER R ER+A+RK Q+GS Sbjct: 241 DSAVRITHLPTGIVVSQQDEKSQHKNRAKAMKILRARIYDAERARQQAERAASRKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIG 353 GDRSERIRTYNF QGR+TDHRIN TLYKL+ VL G ID++I+ L + QA + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINFTLYKLDKVLAGEAIDEVIDALASEDQAARLA 355 >gi|288800098|ref|ZP_06405557.1| peptide chain release factor 1 [Prevotella sp. oral taxon 299 str. F0039] gi|288333346|gb|EFC71825.1| peptide chain release factor 1 [Prevotella sp. oral taxon 299 str. F0039] Length = 369 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 139/361 (38%), Positives = 224/361 (62%), Gaps = 13/361 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L++RF E+ +++ + + Y++LT+EY + I+ Y ++ Sbjct: 9 KLEGLESRFEEVSTLITDPAVIADQNRYVRLTKEYKDLGDIMEARKKYVTCLNVIKEAKD 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D ++R++A+ E+ A E + +LE EI L+PKD +D K+ +EIRAGTGG E Sbjct: 69 ILA-NETDQDMREIAREELQANEPLLPKLEEEIKIALVPKDPEDAKNVEVEIRAGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLF+MY++Y W + + + S+ GG+KEI +++G V+ +K+ESGVHR Sbjct: 128 AALFAGDLFQMYKKYCDSMGWSISITNESEGTMGGFKEIAFSVTGTNVYGILKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S V Sbjct: 188 VQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESGV 247 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 RLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYVDDIASRRKS 307 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I +I+ L+ A + + A Sbjct: 308 LVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFVGGDIQAMIDALIVAENTEKLKEA 367 Query: 356 S 356 Sbjct: 368 E 368 >gi|238650227|ref|YP_002916078.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic] gi|259585243|sp|C4K0C9|RF1_RICPU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238624325|gb|ACR47031.1| peptide chain release factor 1 [Rickettsia peacockii str. Rustic] Length = 355 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 176/354 (49%), Positives = 249/354 (70%), Gaps = 2/354 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +++ + +S D ++K ++EYA + +++KI Y++ K E ++ Sbjct: 1 MRFSDNLAKILDKYENLGNTLSSGIMGDEFVKASKEYAELEDVVAKIKEYNKAKSELEEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D+ ++ + E+ +E + +LE + LLPKD D KS I+E+RAG+GG Sbjct: 61 NNFKLEVGLDNATLEMIEDEIYTLENSLPKLERAVKIALLPKDDADSKSAIIEVRAGSGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF LF MY+RYA L+ W+ E+L+ SD GGYKE A+I G+ VFS++KFESGV Sbjct: 121 EEAALFAAVLFNMYQRYAELKGWRFEILAISDTGIGGYKEASASIKGKDVFSKLKFESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPEA E+D+ I +D+RIDT RASG+GGQHVNTTDS Sbjct: 181 HRVQRVPETESQGRIHTSAATVAVLPEAEEVDIKIEDKDLRIDTYRASGAGGQHVNTTDS 240 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI V EKSQH+N+ +A+K+LRAR+Y+ ER++ ER+ +R+ Q+GSGD Sbjct: 241 AVRITHIPTGITVALQDEKSQHKNKAKALKILRARIYEEERRKKEQERADSRRGQVGSGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF QGR++DHRINLTLYK++ V+ G +D+ + L+ +AK + Sbjct: 301 RSERIRTYNFPQGRVSDHRINLTLYKIDEVVKNGQLDEFVEALIADDEAKKLLE 354 >gi|227514467|ref|ZP_03944516.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC 14931] gi|227087153|gb|EEI22465.1| peptide chain release factor RF1 [Lactobacillus fermentum ATCC 14931] gi|299782948|gb|ADJ40946.1| Peptide chain release factor 1 (RF-1) [Lactobacillus fermentum CECT 5716] Length = 362 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 155/353 (43%), Positives = 243/353 (68%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++KL++E ++ + K + Y + Q +D Sbjct: 8 DKLQAVADRYDELNELISDPEVIADSQRFMKLSKEEGSLRETVEKYNEYKEVTQTIKDDT 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD ++ ++ + E+ ++ +L++E+ LL+PKD +DDK+ I+EIR GG Sbjct: 68 EMLREE-SDPDLVEMTKEELNEAKERQAQLQDELEVLLIPKDPNDDKNIIMEIRGAAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+ MY RYA + W VEV+ ++ + GG+KEI I+G V+S++KFE+G H Sbjct: 127 EASLFAADLYNMYVRYAEKQGWNVEVVDRNETEVGGFKEIALIITGDQVYSKLKFENGAH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE++GRVHTS ATV V+PEA ++DVD+ +DIR+D R+SG+GGQH+N T SA Sbjct: 187 RVQRIPATESAGRVHTSTATVGVMPEAEDVDVDLDPKDIRVDVYRSSGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD +++ +E A RK IG+GDR Sbjct: 247 VRMTHLPTGIVVAMQDERSQQQNRAKAMQILKARVYDYYQQQEQSEYDAQRKNAIGTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +++II L+ A QA+ + Sbjct: 307 SERIRTYNYPQNRVTDHRIGLTLNKLDKIMAGDLEEIIESLIIADQAQKLEQL 359 >gi|56416889|ref|YP_153963.1| peptide chain release factor 1 [Anaplasma marginale str. St. Maries] gi|222475254|ref|YP_002563670.1| peptide chain release factor 1 (prfA) [Anaplasma marginale str. Florida] gi|255003238|ref|ZP_05278202.1| peptide chain release factor 1 [Anaplasma marginale str. Puerto Rico] gi|255004365|ref|ZP_05279166.1| peptide chain release factor 1 [Anaplasma marginale str. Virginia] gi|81599140|sp|Q5PAH2|RF1_ANAMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790858|sp|B9KIV2|RF1_ANAMF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56388121|gb|AAV86708.1| peptide chain release factor 1 [Anaplasma marginale str. St. Maries] gi|222419391|gb|ACM49414.1| peptide chain release factor 1 (prfA) [Anaplasma marginale str. Florida] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 187/358 (52%), Positives = 256/358 (71%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + L +F ++ ++S+ S V A++ + EY+ + PI+S I Y ++E + Sbjct: 1 MSFEDSLEGLCEKFRILKQQLSDPESLGVQAFVVASREYSDLLPIMSLIEEYQTAQKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I ++D+E+ LA+ E+ +K I +L++++ LLPKD DD +S ILEIRAGT Sbjct: 61 ELEGLINSTDTDAELVHLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WKVE + S GGYKE I G+ VF+R+KFES Sbjct: 121 GGEEAALFVCDLYRMYIKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V EKSQH+N+ +A+KVLRARLY++E++++ +E S RK QIGS Sbjct: 241 DSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RITDHRIN+TLY+LE+++ +G +D+ ++ L+ QA + S Sbjct: 301 GDRSERIRTYNFLQSRITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQIS 358 >gi|56808656|ref|ZP_00366381.1| COG0216: Protein chain release factor A [Streptococcus pyogenes M49 591] gi|71903502|ref|YP_280305.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS6180] gi|71910676|ref|YP_282226.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS5005] gi|209559423|ref|YP_002285895.1| peptide chain release factor 1 [Streptococcus pyogenes NZ131] gi|119361623|sp|Q48TL0|RF1_STRPM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238054473|sp|B5XLI8|RF1_STRPZ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71802597|gb|AAX71950.1| bacterial peptide chain release factor 1 [Streptococcus pyogenes MGAS6180] gi|71853458|gb|AAZ51481.1| bacterial peptide chain release factor 1 [Streptococcus pyogenes MGAS5005] gi|209540624|gb|ACI61200.1| Peptide chain release factor 1 [Streptococcus pyogenes NZ131] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 161/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|294673455|ref|YP_003574071.1| peptide chain release factor 1 [Prevotella ruminicola 23] gi|294472502|gb|ADE81891.1| peptide chain release factor 1 [Prevotella ruminicola 23] Length = 371 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 135/360 (37%), Positives = 217/360 (60%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+ RF E+ +++ + KLT+EY + I+ Y ++ Sbjct: 10 QKLDGLEARFEEVSTLITDPAVIADQQRFVKLTKEYKDLGDIMDARKRYIACLNGIKEAK 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A+ E+ E+ +LE EI L+PKD +D K+ +EIRAGTGG Sbjct: 70 DILA-NETDPEMKEMAREELAINEELQPQLEEEIKIALIPKDPEDAKNVEMEIRAGTGGD 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF+MY+ Y + W+V + S+ GG+KE+ +++G V+ +K+ESGVH Sbjct: 129 EAALFAGDLFKMYKNYCESKGWQVSITYVSEGAVGGFKEVDFSVTGADVYGTLKYESGVH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GR+ TSAATVAVLPEA + +V + +I+ DT R+SG+GGQ+VN +S Sbjct: 189 RVQRVPVTESNGRMQTSAATVAVLPEADKFEVHVNEGEIKWDTFRSSGAGGQNVNKVESG 248 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ L +YD E ++ ++ + RK Sbjct: 249 VRLRYMWKNPNTGETEEILIECTETRDQPKNKERALSRLYTFIYDKEHQKYVDDIANRRK 308 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHRI T + L+ L G I +I+ L A A+ + Sbjct: 309 SLVSTGDRSAKIRTYNFPQGRVTDHRIGYTTHDLQGFLGGDIQAMIDALTVAENAERMKE 368 >gi|300361412|ref|ZP_07057589.1| peptide chain release factor RF1 [Lactobacillus gasseri JV-V03] gi|300354031|gb|EFJ69902.1| peptide chain release factor RF1 [Lactobacillus gasseri JV-V03] Length = 362 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y +E D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADMREVVQKYRKYKSDIKEIDDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + D ++ ++A+ E +EKE+ ELE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IISSESDD-DLVEMAKEENFELEKEVAELEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAETQGWKVSLIDSEPTEVGGYKRVAVMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRVPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNRDKYDAKRKDAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ V+ G +D+IIN L+ +Q + + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELDEIINALVLYYQTQQLEKMAE 359 >gi|256419486|ref|YP_003120139.1| peptide chain release factor 1 [Chitinophaga pinensis DSM 2588] gi|256034394|gb|ACU57938.1| peptide chain release factor 1 [Chitinophaga pinensis DSM 2588] Length = 354 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 157/356 (44%), Positives = 228/356 (64%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF ++ L ++ V + KL++EY + I+ Y + Sbjct: 1 MIDKLYAIKGRFEQVSLALTNPEIVSDNKQFSKLSKEYRQLEKIVKVYDAYMKTLDNIAF 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 V+ + D E+R+LA+ E A++ E E +I LL+PKD D+K+ +LEIR GTG Sbjct: 61 NKEVL--ESGDEEMRELAKEETEALQLLKDEQEADIRNLLIPKDPQDEKNAMLEIRGGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF GDL RMY RY + W +++ + GGYKE+V ++G V+ +KFESG Sbjct: 119 GDEASLFAGDLLRMYLRYCETKGWSTSIMNETPGAAGGYKEVVVEVTGDDVYGTLKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GRVHTSAATVA+LPEA E+DV+I DI++DT R+SG+GGQHVN T+ Sbjct: 179 VHRVQRVPATETQGRVHTSAATVAILPEAEEVDVEIRDADIKMDTFRSSGAGGQHVNKTE 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+G++V +SQH NR AMK+LR+R+Y+ ++ ++ RK + +G Sbjct: 239 SAVRLTHIPSGVVVECQEGRSQHSNRDIAMKMLRSRIYEAAVRKHEEAIASQRKSLVSTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+TDHRI +T+Y L+ + G I +++ L A A+ + S Sbjct: 299 DRSAKIRTYNYPQGRVTDHRIGMTMYNLDAFMNGDIQEMVQALQFAENAEKMKMGS 354 >gi|154490829|ref|ZP_02030770.1| hypothetical protein PARMER_00746 [Parabacteroides merdae ATCC 43184] gi|154088577|gb|EDN87621.1| hypothetical protein PARMER_00746 [Parabacteroides merdae ATCC 43184] Length = 369 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 154/362 (42%), Positives = 228/362 (62%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L +RF E+ +++ + Y+KLT+EY ++ II Y Q ++ Sbjct: 9 EKLDGLVSRFEEVSTLITDPNVIADQKRYVKLTKEYKELNEIIKARKEYMQCLNGLEEAR 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R++A+ E A E I ELE EI LL+P D DDK+ I+EIR GTGG Sbjct: 69 LMMAE--TDPEMREIAREEAAACEARIPELEEEIKLLLVPADPQDDKNAIVEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY +Y ++ WKV + S S+ GG+KEI+ T+SG V+ +K+ESGVH Sbjct: 127 EAALFAGDLYRMYVKYCEMKGWKVALSSCSEGAAGGFKEIIFTVSGEKVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRVHTSAATVAVLPEADEFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ LR+ +YD E ++ ++ + RK Sbjct: 247 VRLRYVWKNPNTGVSEEILIECTETRDQPKNKERALTRLRSFIYDKEHQKYLDDIANKRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I ++ L+ A A+ + Sbjct: 307 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQGCLDQLIVAENAERLKE 366 Query: 355 AS 356 + Sbjct: 367 SE 368 >gi|228477589|ref|ZP_04062222.1| peptide chain release factor 1 [Streptococcus salivarius SK126] gi|228250733|gb|EEK09931.1| peptide chain release factor 1 [Streptococcus salivarius SK126] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMELSREEANTRETVTAYREYKQVIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D ++ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKEASGDPDLEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKYAETQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKLDEVVDALVLYDQTQKLEELN 358 >gi|88606704|ref|YP_505023.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ] gi|119361507|sp|Q2GKS8|RF1_ANAPZ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|88597767|gb|ABD43237.1| peptide chain release factor 1 [Anaplasma phagocytophilum HZ] Length = 359 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 185/356 (51%), Positives = 250/356 (70%), Gaps = 4/356 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 L +F ++ ++S ++ A++ + EY+ + PI+S I Y ++E Sbjct: 1 MSFESTFEGLCEKFRILKQQLSAPETLGTQAFVVASREYSDLLPIMSLIEKYKSTQKEIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L ++ ++D E+R LA+ E +K + +L +E+ LLPKD DD ++ ILEIRAGT Sbjct: 61 ELEELVNSASTDPELRSLAKDESHIKQKLLPKLRHELQLSLLPKDRDDSRNAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVG+L+RMY +YA + WKVE ++ S GGYKE +I G+ VF+R+KFES Sbjct: 121 GGEEAALFVGNLYRMYLKYAERKNWKVETINISTTGIGGYKEASFSIGGKDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V EKSQH+N+ +A+KVLRARLY++E+++ E S RK QIGS Sbjct: 241 DSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKREEEISKMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHRINLT Y+L+YV+ +G +D+ I+ L+ QA + Sbjct: 301 GDRSERIRTYNFLQSRITDHRINLTSYRLDYVMKEGDLDEFIDALVADDQANKLKQ 356 >gi|190570518|ref|YP_001974876.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213019274|ref|ZP_03335081.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|238054477|sp|B3CL87|RF1_WOLPP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|190356790|emb|CAQ54152.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995383|gb|EEB56024.1| peptide chain release factor 1 [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 363 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 186/355 (52%), Positives = 252/355 (70%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + DLK +F+++E + ++ ++ ++EY+ + PII I Y+ K+E Sbjct: 1 MDIENNLQDLKKKFSDVERNLENPTNLSQKEFVSFSKEYSELRPIIEIIDEYNILKEEIS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL-PKDTDDDKSCILEIRAG 119 DL ++ D NSD +I++LA+ E+L +K + L L PKD DD ++ ILEIRAG Sbjct: 61 DLEEIMKDENSDGDIKELAKEELLEKQKIVLPKVKAKLKLALLPKDEDDSRNAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF LFRMY++YA R WK E +S S+ GGYKE A I+G VF+R+KFE Sbjct: 121 TGGEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+SGR+HTSAATVA+LPE E+D +I +D+RID R+SG GGQ VNT Sbjct: 181 SGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFEIEEKDLRIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTGI+V EKSQH+N+ +A+KVLRARLY++ER++ ERS RK QIG Sbjct: 241 TDSAVRVTHLPTGIVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEMERSTMRKSQIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMI 352 SGDRSERIRTYNF Q RITDHRINLT ++LE ++ +G +D+ I L++ ++A+ + Sbjct: 301 SGDRSERIRTYNFPQSRITDHRINLTSHRLEQIIKEGELDEFIEALISRNEAERL 355 >gi|110598269|ref|ZP_01386544.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031] gi|110340077|gb|EAT58577.1| peptide chain release factor 1 [Chlorobium ferrooxidans DSM 13031] Length = 357 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 161/355 (45%), Positives = 229/355 (64%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K + ++E +++ + KL +EY+ + I+ Y Q K E Sbjct: 1 MLDKLQSIKEKHLDLEQLLADPNAATDQARFRKLNKEYSDLREIVQAYDAYGQAKTELDQ 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D SD E+R+L Q E+ ++K++ ELE + LLLPKD D ++ I+EIRAGTG Sbjct: 61 SKKLL-DSESDPEMRELVQAEISELQKKLPELEQHLKVLLLPKDEADSRNVIVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFES 180 G EAALF D+ RMY+RYA + WK EVL +++ GG++EI +SG V+ MK+ES Sbjct: 120 GEEAALFAADILRMYQRYAEKQGWKCEVLHYNESSMPGGFREITLEVSGHDVYGTMKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSA +VAVLPEA E+DV+I ED+R DT R+ G GGQ+VN Sbjct: 180 GVHRVQRVPDTETQGRIHTSAVSVAVLPEAEEVDVEIRREDLRFDTYRSGGKGGQNVNKV 239 Query: 241 DSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVRITH+PTGI+ E+SQ QN+ RAMK+LR +LYD+ +R+ R+ + + Sbjct: 240 ETAVRITHMPTGIVSACQEERSQLQNKERAMKMLRTKLYDILLAEQVQQRADLRRSMVTT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRS +IRTYN+ Q R+TDHRI T + L +LQG I DII+ L QA+ + + Sbjct: 300 GDRSAKIRTYNYPQSRVTDHRIGFTSHALPQILQGEIQDIIDALKMHDQAERLKA 354 >gi|238783270|ref|ZP_04627295.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970] gi|238715863|gb|EEQ07850.1| Peptide chain release factor 1 [Yersinia bercovieri ATCC 43970] Length = 360 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 168/362 (46%), Positives = 247/362 (68%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + ++ Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDLEMREMAQEELKEAKARSEELEQQLQLLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG G F ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGEGAFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG++V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGLVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + Sbjct: 297 LLGTGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLIQPIVQEYQADQLSAL 356 Query: 356 SE 357 SE Sbjct: 357 SE 358 >gi|269926759|ref|YP_003323382.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC BAA-798] gi|269790419|gb|ACZ42560.1| peptide chain release factor 1 [Thermobaculum terrenum ATCC BAA-798] Length = 355 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 239/356 (67%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQD 61 +++ +++ RF E++ MS+ +L E + + I+S Y + K ++ Sbjct: 1 MLERLDNIEKRFDELDRMMSDPEIFSDPSRLMEVARERSELEDIVSLYREYKKVKLTREE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D +IR +A+ E + ++LE + LLPKD +D+K I+EIRAGTG Sbjct: 61 DRRLMEDP--DPDIRQMAEEEYEQLADREKDLEERLKIALLPKDPNDEKDVIVEIRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + WK EVLS+S++D GG+KEI+ + GRG +SR+K+ESG Sbjct: 119 GEEAALFAADLYRMYTRYAERQGWKTEVLSTSESDAGGFKEIIFEVKGRGAYSRLKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E++V+I ED+RID R++G GGQ VNTTD Sbjct: 179 VHRVQRVPVTESQGRIHTSTATVAVLPEAEEVEVEIDPEDLRIDVFRSTGHGGQSVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V EKSQ +NR +AM VLRARLY++ER++ E R+ +G+G Sbjct: 239 SAVRITHLPTGLVVTCQDEKSQLKNRAKAMAVLRARLYEMERRKREEELGQVRRSMVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYNF Q R+TDHRI + L +L G ID II L A +A+ + SA Sbjct: 299 ERSEKIRTYNFPQDRVTDHRIKESFSNLPAILDGEIDRIIESLQVADRAEQLQSAG 354 >gi|218263804|ref|ZP_03477780.1| hypothetical protein PRABACTJOHN_03470 [Parabacteroides johnsonii DSM 18315] gi|218222477|gb|EEC95127.1| hypothetical protein PRABACTJOHN_03470 [Parabacteroides johnsonii DSM 18315] Length = 369 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 153/362 (42%), Positives = 228/362 (62%), Gaps = 14/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L +RF E+ +++ + Y+KLT+EY ++ II Y Q ++ Sbjct: 9 EKLEGLVSRFEEVSTLITDPNVIADQKRYVKLTKEYKELNEIIKARKEYMQCLNGLEEAR 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E++++A+ E A E I ELE EI LL+P D DDK+ I+EIR GTGG Sbjct: 69 LMMAE--TDPEMKEIAREEAAACEARIPELEEEIKLLLVPADPQDDKNAIVEIRGGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY +Y ++ WKV + S S+ GG+KEI+ T+SG V+ +K+ESGVH Sbjct: 127 EAALFAGDLYRMYVKYCEMKGWKVALSSCSEGAAGGFKEIIFTVSGEKVYGTLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+ G+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRVHTSAATVAVLPEADEFDVEINEGEIKWDTFRSGGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ LR+ +YD E ++ ++ + RK Sbjct: 247 VRLRYVWKNPNTGVSEEILIECTETRDQPKNKERALTRLRSFIYDKEHQKYLDDIANKRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I ++ L+ A A+ + Sbjct: 307 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGDIQGCLDQLIVAENAERLKE 366 Query: 355 AS 356 + Sbjct: 367 SE 368 >gi|169833220|ref|YP_001694464.1| peptide chain release factor 1 [Streptococcus pneumoniae Hungary19A-6] gi|238688292|sp|B1IBH9|RF1_STRPI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|168995722|gb|ACA36334.1| peptide chain release factor 1 [Streptococcus pneumoniae Hungary19A-6] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTRRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVMDALVLYDQTQKLEELN 358 >gi|237721316|ref|ZP_04551797.1| peptide chain release factor 1 [Bacteroides sp. 2_2_4] gi|229449112|gb|EEO54903.1| peptide chain release factor 1 [Bacteroides sp. 2_2_4] Length = 370 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 145/362 (40%), Positives = 225/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF E +++ + Y+KLT+EY + ++ Y Q ++ Sbjct: 9 EKLDGLVARFEETSTLITDPAVIADQKRYVKLTKEYKELDDLMKARKEYIQLLGNIEEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+E+R++A+ E+ ++ + LE EI +L+P D D K+ ILEIR G GG Sbjct: 69 NILA-NESDAEMREMAKEEMDNSQERLPVLEEEIKLMLVPADPQDSKNAILEIRGGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++ + WK+EV ++++ GG+KE+V +++G V+ +K+ESGVH Sbjct: 128 EAAIFAGDLFRMYAKFCETKGWKMEVSNANEGTAGGFKEVVCSVTGDNVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAA+VAVLPEA E DV I +I+ DT R+ G+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAASVAVLPEAEEFDVVINEGEIKWDTFRSGGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ +I ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYIWKNPNTGIAEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIASKRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLAAFMDGDIQDCIDHLIVAENAERLKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|116629883|ref|YP_815055.1| peptide chain release factor 1 [Lactobacillus gasseri ATCC 33323] gi|238853674|ref|ZP_04644042.1| peptide chain release factor 1 [Lactobacillus gasseri 202-4] gi|282851601|ref|ZP_06260966.1| peptide chain release factor 1 [Lactobacillus gasseri 224-1] gi|311110481|ref|ZP_07711878.1| peptide chain release factor 1 [Lactobacillus gasseri MV-22] gi|122273179|sp|Q042K5|RF1_LACGA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116095465|gb|ABJ60617.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus gasseri ATCC 33323] gi|238833712|gb|EEQ25981.1| peptide chain release factor 1 [Lactobacillus gasseri 202-4] gi|282557569|gb|EFB63166.1| peptide chain release factor 1 [Lactobacillus gasseri 224-1] gi|311065635|gb|EFQ45975.1| peptide chain release factor 1 [Lactobacillus gasseri MV-22] Length = 362 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y +E D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADMREVVQKYRKYKSDIKEIDDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + D ++ ++A+ E +EKE+ +LE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IISSESDD-DLVEMAKEENSELEKEVAKLEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAETQGWKVSLIDSEPTEVGGYKRVAVMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRVPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNRDKYDAKRKDAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ V+ G +D+IIN L+ +Q + + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELDEIINALVLYYQTQQLEKMAE 359 >gi|332523754|ref|ZP_08400006.1| peptide chain release factor 1 [Streptococcus porcinus str. Jelinkova 176] gi|332315018|gb|EGJ28003.1| peptide chain release factor 1 [Streptococcus porcinus str. Jelinkova 176] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ L++R+ E+ +S+ V +++L++E A ++ Y + Q Sbjct: 1 MNIYDQLQSLEDRYEELGELLSDPEVVSDTKRFMQLSKEEANTRDTVTTYRQYKEIIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+EI ++A+ E+ + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 ADAEEMIKESGGDAEIEEMAKEELKESKAAKENYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLVMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE +++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEDVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI HIPT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHIPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALIMYDQTQKLESLN 358 >gi|290475215|ref|YP_003468101.1| peptide chain release factor RF-1 [Xenorhabdus bovienii SS-2004] gi|289174534|emb|CBJ81328.1| peptide chain release factor RF-1 [Xenorhabdus bovienii SS-2004] Length = 360 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 247/355 (69%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R EI + + ++ + D + L++EYA ++ + + +++ Q Sbjct: 8 KLEALQERHEEILVHLGDASVIADQDRFRALSKEYAQLTDVTHCFKSWKTVQEDLQTAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ + ELE ++ LLLPKD DD+++C LE+RAGTGG E Sbjct: 68 ML----DDLEMREMAQEELKDAKIRNEELEQQLQLLLLPKDPDDERNCFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY RYA R+W+VE++S+++ + GGYKE++A +SG V+ +KFESG HR Sbjct: 124 AAIFAGDLFRMYSRYAEARRWRVEIISANEGEHGGYKEVIAKVSGDQVYGHLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAV+PE E + DI D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVMPEIPEAELPDISPGDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + ++ R+ +GSGDR Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIRAAEMHKRQEAEASERRNLLGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 304 SDRNRTYNFPQGRVTDHRINLTLYRLDEVIEGKLDMLIQPIIIEYQADQLSALSE 358 >gi|326386588|ref|ZP_08208210.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM 19370] gi|326208903|gb|EGD59698.1| peptide chain release factor 1 [Novosphingobium nitrogenifigens DSM 19370] Length = 356 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 250/355 (70%), Gaps = 6/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ ++ + RFAE+E R++ +A+I + +YA + P+ + +L Sbjct: 3 IADSRLDQIAARFAELEARLASGTLDAEAFIAASRDYAELEPVAHTARDVRLLR---DEL 59 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D+++R LA+ E+ I E+ E E + +LP+D D +LEIRAGTGG Sbjct: 60 ASLAALDEPDADMRALAEEEMARIRAELPEAERRLALAMLPRDNADSHPAMLEIRAGTGG 119 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DLFRMYERYAA + WKVEV+S++ +D GG+KE++A ++G+GVF+++K+ESGV Sbjct: 120 DEAALFAADLFRMYERYAAEQGWKVEVISANASDIGGFKEVIAHVAGQGVFAKLKYESGV 179 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV I +D++ID RASG+GGQHVNTTDS Sbjct: 180 HRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVSIDDKDLKIDIYRASGAGGQHVNTTDS 239 Query: 243 AVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+VT + +SQH+N+ +AM+VLR RLYD+ R++ + R+ +GSGD Sbjct: 240 AVRITHLPTGIVVTQQDERSQHKNKAKAMQVLRTRLYDLRREQAQGAEAEARRAMVGSGD 299 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF QGR+TDHRINLTL++L +L G + ++I+ L QAK + + Sbjct: 300 RSERIRTYNFPQGRVTDHRINLTLHRLPEILAGTGLGELIDALTAEDQAKRLAAM 354 >gi|269958696|ref|YP_003328483.1| peptide chain release factor 1 [Anaplasma centrale str. Israel] gi|269848525|gb|ACZ49169.1| peptide chain release factor 1 [Anaplasma centrale str. Israel] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 186/358 (51%), Positives = 256/358 (71%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + L +F ++ ++S+ S V A++ + EY+ + PI+S + Y ++E + Sbjct: 1 MSFEDSLEGLCEKFRILKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I ++D+E+ LA+ E+ +K I +L++++ LLPKD DD +S ILEIRAGT Sbjct: 61 ELEGLINSTDTDAELVHLAREELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WKVE + S GGYKE I G+ VF+R+KFES Sbjct: 121 GGEEAALFVCDLYRMYIKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V EKSQH+N+ +A+KVLRARLY++E++++ +E S RK QIGS Sbjct: 241 DSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RITDHRIN+TLY+LE+++ +G +D+ ++ L+ QA + S Sbjct: 301 GDRSERIRTYNFLQSRITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQIS 358 >gi|257066246|ref|YP_003152502.1| peptide chain release factor 1 [Anaerococcus prevotii DSM 20548] gi|256798126|gb|ACV28781.1| peptide chain release factor 1 [Anaerococcus prevotii DSM 20548] Length = 358 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 229/355 (64%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I +K + ++E +M + + K+T EY ++ PI+ K + + Sbjct: 3 ENIEHIKENYLDLEKKMIDPDVLADISKLTKITREYNSLKPIVEKYDEIKDSESTIAENK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +IG+ D ++ ++ + E+ EK + + + E+ LL+PKD +D + I+EIR G GG Sbjct: 63 ELIGEA-DDQDMVEMLKDEIKENEKLLEKYKEEMKILLIPKDPNDSRDVIVEIRPGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL+RMY YA +K E + S GG KE I G G +SR K+ESGVH Sbjct: 122 EAGLFAGDLYRMYHMYADKEGYKTEDVEVSSQGVGGIKEATFMIRGEGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E+DV++ DIR D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVDEVDVELDPNDIRTDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ EKSQ +N+ +AMK+L AR+Y++E ++ E + NRK Q+G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDEKSQIKNKEKAMKILLARIYELEEEKRNKEIADNRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGRITDHRIN T+Y+L+ L G I ++I+ L+ Q + + E Sbjct: 302 SERIRTYNFPQGRITDHRINKTIYQLDDFLNGNIGEMIDSLIAEDQTRKLEKIGE 356 >gi|114330834|ref|YP_747056.1| peptide chain release factor 1 [Nitrosomonas eutropha C91] gi|122314234|sp|Q0AHU1|RF1_NITEC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114307848|gb|ABI59091.1| bacterial peptide chain release factor 1 (bRF-1) [Nitrosomonas eutropha C91] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 177/356 (49%), Positives = 240/356 (67%), Gaps = 9/356 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ L R E++ +S +D Y KL+ E + I P+ Y Q +Q+ Sbjct: 7 DQLTRLSIRLEELDKLLSNEKITADLDNYRKLSRERSEIEPVTRFYHTYQQVEQDLATAM 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D + RD A+ E+ A ++++ ++E EI LLP+D +D+++ LEIRAGTGG Sbjct: 67 EM----SVDPQFRDFAEAEIDADKQKLADIETEILKQLLPRDPNDERNIFLEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ALF GDLFRMY RYA W+VE++S + ++ GGYKEI+A I G G +SR+KFESG H Sbjct: 123 ESALFAGDLFRMYSRYAEREGWQVEIVSQNPSEVGGYKEIIARIIGHGAYSRLKFESGAH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATE GRVHTS TVAVLPEA EI V + D+RIDT RASG+GGQH+N TDS Sbjct: 183 RVQRVPATETQGRVHTSTCTVAVLPEADEISGVTLNPADLRIDTFRASGAGGQHINKTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+ +SQH+N+ +AM VL +R+ D + + E++A RK +GSG+ Sbjct: 243 AVRITHLPTGIVAECQEGRSQHKNKAQAMSVLISRILDKQVRAQQAEQAAARKSLVGSGE 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYNF QGRITDHRINLTLYK+E ++ G +D++ + L HQA + + E Sbjct: 303 RSERIRTYNFPQGRITDHRINLTLYKIEQIMDGELDELCSTLAAEHQAAQLAAMIE 358 >gi|328950071|ref|YP_004367406.1| Peptide chain release factor 1 [Marinithermus hydrothermalis DSM 14884] gi|328450395|gb|AEB11296.1| Peptide chain release factor 1 [Marinithermus hydrothermalis DSM 14884] Length = 369 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 157/357 (43%), Positives = 224/357 (62%), Gaps = 8/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ + +E ++ + Y +L+ YA + I+ Y + + + Sbjct: 11 MLEKLKQLETEYQALEAQLGDPGVLADPKRYRELSRRYAELGEIVRVYREYTKTLDDLEQ 70 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E+ ++A+ E +E ELE E+ LLLPKD D K+ I+EIRAGTG Sbjct: 71 AQALL----DDPELGEMARAEKETLEARRDELERELELLLLPKDPVDAKNAIVEIRAGTG 126 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+ MY RYA + VEVL S D GG+ ++V ++G G + K+ESG Sbjct: 127 GEEAALFAGDLYNMYVRYAERLGYTVEVLDSHPTDLGGFSKVVFQVNGSGAYGVFKYESG 186 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS ATVAVLPEA E D ++ + +IRID RASG GGQ VNTTD Sbjct: 187 VHRVQRVPATETQGRIHTSTATVAVLPEAEEADFELDMSEIRIDVQRASGPGGQGVNTTD 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H+PTGI+V +SQ +NR +A+ +LR+RL +++R + R QIG+G Sbjct: 247 SAVRVVHLPTGIIVTCQDSRSQIKNREKALTILRSRLLEMKRAEEEAKLRRTRLAQIGTG 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +RSE+IRTYNF Q R+TDHRI+ T + LE VL G ++++ N L A Q +M+ ++ Sbjct: 307 ERSEKIRTYNFPQSRVTDHRIHYTTHNLEGVLAGELEELTNALKKADQERMLEELNQ 363 >gi|227486771|ref|ZP_03917087.1| peptide chain release factor RF1 [Anaerococcus lactolyticus ATCC 51172] gi|227235241|gb|EEI85256.1| peptide chain release factor RF1 [Anaerococcus lactolyticus ATCC 51172] Length = 358 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ + ++E ++++ +D + K+++EY ++ P++ K + + Sbjct: 3 ENLEHVRENYKQLEAKLADPAVLADMDQFRKVSKEYNSLKPVVEKYEEIKNAEDTIAENQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + D ++ + + E+ + ++ L++E+ LL+PKD +D+K I+EIR G GG Sbjct: 63 ELINEA-DDQDMIQMLKDEIEENKDKLEVLKDEMQILLIPKDPNDEKDVIVEIRPGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL+RMY YA +K E + + GG K+ + G G +S++K+ESGVH Sbjct: 122 EAGLFAGDLYRMYNMYADKAGFKTEEIEVNTQGVGGIKDATFVVRGEGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E+++ I DIR D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVDEVELHIDPNDIRTDVYRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTG++V EKSQ +N+ +AM+VLRARLY++E ++ E + NRK Q+G+GDR Sbjct: 242 VRLTHIPTGLVVAIQDEKSQIKNKEKAMRVLRARLYELEEQKRNKEIADNRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGRITDHRIN T+Y+L+ L G I+D+IN L+ Q + + Sbjct: 302 SERIRTYNFPQGRITDHRINKTIYQLDDFLNGDIEDMINSLIAEDQTRKLEKVG 355 >gi|326318376|ref|YP_004236048.1| peptide chain release factor 1 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323375212|gb|ADX47481.1| peptide chain release factor 1 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 360 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 239/361 (66%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ I + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLEELDFLLSREDIMSDMAQYRTISREHAEVTQIAGRYARYRQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ D+A+ E+ A E E+ +LE+E+ LLLP+D D+ ++ LEIR Sbjct: 61 DLAGAREML----DDPDMADMAREEISAAEAELVQLEDELQRLLLPRDPDEARNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA WKVE+LS+SDN+ GGYKE+V + G GV+ ++ Sbjct: 117 AGTGGDESALFAGDLARMYTRYAATAGWKVEILSASDNEIGGYKEVVLRVEGDGVYGALR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEQQAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + ++++ L A +A+++ Sbjct: 297 LVGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGEVLDALRHAREAELLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|71892127|ref|YP_277859.1| peptide chain release factor 1 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|119361510|sp|Q492V8|RF1_BLOPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71796233|gb|AAZ40984.1| peptide chain release factor 1 (RF-1) [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 360 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 161/362 (44%), Positives = 239/362 (66%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + ++ L+ RF +E +S+ ++D L +E+A +S I+ + KQ Sbjct: 1 MNSIIVNKLIALQERFNVLEKLLSKPNAIDDKKHFCTLAKEHARLSEIVVCFERWLDIKQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E + ++ D ++ D+AQ E+ +E + LLLP D++D C +E+R Sbjct: 61 EIINTKKLLE----DVDMHDIAQDELKTFYLNRNNIEKNLKILLLPTDSNDKLGCFIELR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F G+LFRMY RY+ +R+WK+E+++++ + GGYKEI+A I RG +S +K Sbjct: 117 AGTGGKEAAIFTGELFRMYVRYSEVRRWKMEIINATYGECGGYKEIIAKIPYRGAYSLLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQR+P TE+ GR+HTS T+AV+PE +I+ I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRIPHTESQGRIHTSTCTIAVIPEIPDIELPSIDPHDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+P+G++V E+SQH+N+ +A+ VL +RL+ +E KR E S R+ Sbjct: 237 VNTTDSAIRITHVPSGLVVECQDERSQHKNKAKALSVLGSRLHAIEMKRRQQEVSCTRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRS+RIRTYNF QGRITDHRI+ T YKL ++ G +D +I P++ HQ+ + Sbjct: 297 LLGTGDRSDRIRTYNFQQGRITDHRISFTSYKLNEIMNGELDLLIQPIIHQHQSDQLNKL 356 Query: 356 SE 357 E Sbjct: 357 LE 358 >gi|323463876|gb|ADX76029.1| peptide chain release factor 1 [Staphylococcus pseudintermedius ED99] Length = 358 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 159/353 (45%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ ++ R+ ++ +S+ V K ++E + + + Y Q K++ +++ Sbjct: 3 DQLDIVEERYEQLNELLSDPEVVSDSNLLRKYSKEQSELQKTVEVYRQYKQVKEDAEEIE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +++ ++ + E A++ E+ ELE ++ LL+PKD +D+K I+EIR GG Sbjct: 63 LMLAET-DEADEVEMLKEEASALKAEVPELEEQLKLLLIPKDPNDEKDVIVEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F GDLFRMY ++A ++K+E++ ++++D GGYKEI ++SG G +S++K+E+G H Sbjct: 122 EAAIFAGDLFRMYSKFAESHRFKLEIVEATESDHGGYKEISFSVSGDGAYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE +++++I ED++IDT R+SG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVEDVEIEIRNEDLKIDTYRSSGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITHIPTG++ TSSEKSQ QNR +AMKVL+ARLYD++ + + +A RK +G+GDRS Sbjct: 242 VRITHIPTGVIATSSEKSQIQNREKAMKVLKARLYDMKLQEEQQKYAAQRKSAVGTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHRI LTL KL+ +++G +D+I++ L Q + + + Sbjct: 302 ERIRTYNYPQSRVTDHRIGLTLQKLDQIMEGKLDEIVDALTMHEQTEKLKELN 354 >gi|163784022|ref|ZP_02178981.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1] gi|159880707|gb|EDP74252.1| peptide chain release factor RF-1 [Hydrogenivirga sp. 128-5-R1-1] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 170/350 (48%), Positives = 247/350 (70%), Gaps = 6/350 (1%) Query: 11 DLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +L+ + E+E +++ + +L +E+ ++ ++ + Y+ ++ ++ ++ Sbjct: 11 ELEAKLKEVEEKLASPEVANNPKQLQELAKEHKHLAYVVELFNRYENIEKSIKETKELL- 69 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 H+ D E+R LA+ E+ ++ + +LE+EI L+PKD +DDK+ ILEIR G GG EAAL Sbjct: 70 -HSQDEEMRLLAEEELENLKSQKEKLESEIQIALIPKDPNDDKNVILEIRQGAGGDEAAL 128 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F +LFRMY+RYA WKVE+LS +N+ GG KE++A I G G +S++K+ESGVHRVQR Sbjct: 129 FAAELFRMYQRYAEKNGWKVEILSLHENERGGIKEVIALIKGEGAYSKLKYESGVHRVQR 188 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VP TE+SGR+HTS ATVAVLPEA E+DV+I +D++I+TMRASG+GGQHVNTTDSAVRIT Sbjct: 189 VPETESSGRIHTSTATVAVLPEAEEVDVEINPDDLKIETMRASGAGGQHVNTTDSAVRIT 248 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGI+V E+SQ QNR +AM++LRARL D + + + RK Q+G+GDRSE+I Sbjct: 249 HIPTGIVVSCQDERSQLQNRAKAMQILRARLKDYYDRIQQEKIKSERKSQVGTGDRSEKI 308 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RTYNF Q R+TDHRI T +++ +L G +D+II+ L+ Q + + S S Sbjct: 309 RTYNFPQNRVTDHRIGYTSHRINEILDGELDEIIDQLILKDQEEKLSSLS 358 >gi|254995073|ref|ZP_05277263.1| peptide chain release factor 1 [Anaplasma marginale str. Mississippi] Length = 359 Score = 270 bits (690), Expect = 2e-70, Method: Composition-based stats. Identities = 186/358 (51%), Positives = 256/358 (71%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + L +F ++ ++S+ S V A++ + EY+ + PI+S + Y ++E + Sbjct: 1 MSFEDSLEGLCEKFRILKQQLSDPESLGVQAFVVASREYSDLLPIMSLVEEYQTAQKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L +I ++D+E+ LA+ E+ +K I +L++++ LLPKD DD +S ILEIRAGT Sbjct: 61 ELEGLINSTDTDAELVHLAKEELYTKQKLIPKLKHQLQLSLLPKDKDDSRSAILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFV DL+RMY +YA + WKVE + S GGYKE I G+ VF+R+KFES Sbjct: 121 GGEEAALFVCDLYRMYIKYAERKSWKVEPIGISTTGIGGYKEASLCIGGKDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+SGR+HTSAATVAVLPE E+D+ I +D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETESSGRLHTSAATVAVLPEVEEVDLKIDEKDLRIDVYRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V EKSQH+N+ +A+KVLRARLY++E++++ +E S RK QIGS Sbjct: 241 DSAVRITHIPTGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKIEDEISKMRKSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RITDHRIN+TLY+LE+++ +G +D+ ++ L+ QA + S Sbjct: 301 GDRSERIRTYNFLQSRITDHRINMTLYRLEHIMKEGDLDEFVDALIADDQANKLQQIS 358 >gi|320354565|ref|YP_004195904.1| peptide chain release factor 1 (bRF-1) [Desulfobulbus propionicus DSM 2032] gi|320123067|gb|ADW18613.1| bacterial peptide chain release factor 1 (bRF-1) [Desulfobulbus propionicus DSM 2032] Length = 356 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 173/352 (49%), Positives = 241/352 (68%), Gaps = 4/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + D+ + +E ++++ V Y ++ E+A ++ I + Y + + Sbjct: 3 DNLRDIDEKLGVLERQLADPQLVSDQQRYREIVREHANVAKIAELYAAYTNVRAQIAGNQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I D ++ +LA+ E+ + + ELE I LLPKD +DDK+ LEIRAGTGG Sbjct: 63 ELIRTEQDDPDLVELAKAEIEELVVKQTELEQAIRIRLLPKDPNDDKNIFLEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DLFRMY RYA ++ WKVEV+SS+ GG+KE++A +SG V+SR+K+ESGVH Sbjct: 123 EAALFVADLFRMYSRYAEMQGWKVEVMSSNPIGIGGFKELIALVSGTQVYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTSA TVA++PEA E+D+ I +++ D R+SG GGQ VNTTDSA Sbjct: 183 RVQRVPDTETQGRIHTSAVTVAIIPEAEEVDLHIEPNELKFDVYRSSGPGGQSVNTTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQH+N+ +A++VLRARL D + + S RK Q+GSGDR Sbjct: 243 VRVTHLPTGLVVTCQDEKSQHKNKAKALQVLRARLLDKMEQERHDRISEERKSQVGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF QGR+TDHRINLTLY+L+ V+ G +DDII P++T +Q + + S Sbjct: 303 SERIRTYNFPQGRVTDHRINLTLYRLDQVMAGMLDDIILPIITHYQTEALKS 354 >gi|223983553|ref|ZP_03633736.1| hypothetical protein HOLDEFILI_01017 [Holdemania filiformis DSM 12042] gi|223964481|gb|EEF68810.1| hypothetical protein HOLDEFILI_01017 [Holdemania filiformis DSM 12042] Length = 359 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 220/356 (61%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ ++ R+ EI M V KL +E A++ + + Sbjct: 4 MMKRLQSIEERYNEINEEMMSPEIVSDPKRLAKLGKEQASLKQSVEAYEELKSLNSHIEQ 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +H D E++++AQ+E+ + + L +I LL+PKD +DD CI+EIR G Sbjct: 64 AEEMAKEH--DPELKEMAQMELEELLPKKEALIAKIEVLLIPKDPNDDHDCIVEIRGAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E +F GDL+RMY RYA + WK++VL S+++ GG+ I + G V+ ++KFESG Sbjct: 122 GDEGNIFAGDLYRMYVRYAETQGWKIQVLEMSESEAGGFSMISFLVKGGEVYRQLKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE GR+HTS ATV VLP+A E D++I D+ +T RASG+GGQH+N TD Sbjct: 182 AHRVQRVPKTETQGRIHTSTATVLVLPDAEEADIEIDPADLTFETHRASGAGGQHINKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H+PTGI V +SQH+NR A++++RAR+Y+ ++ E A R+ +IG+G Sbjct: 242 SAVRIVHVPTGITVNCQEGRSQHENRETALRLIRARVYEELTRQKEEEEGAVRRAKIGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSE+IRTYN+ Q R+TDHRI T+ +L+ +++G +DD+I LL Q + + + Sbjct: 302 DRSEKIRTYNYPQNRVTDHRIGFTINQLDRIMEGKLDDVIAALLAEEQRQKLAGEN 357 >gi|262279542|ref|ZP_06057327.1| peptide chain release factor 1 [Acinetobacter calcoaceticus RUH2202] gi|262259893|gb|EEY78626.1| peptide chain release factor 1 [Acinetobacter calcoaceticus RUH2202] Length = 362 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + KL+ E++ +S I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADVEVISDNKRFRKLSREHSDLSEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAELM----KSDPDFKDMAEEEIQANKALLGELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQNWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|319947033|ref|ZP_08021267.1| peptide chain release factor RF1 [Streptococcus australis ATCC 700641] gi|319747081|gb|EFV99340.1| peptide chain release factor RF1 [Streptococcus australis ATCC 700641] Length = 359 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 157/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDMVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + DS++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKEAGGDSDLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL +MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAQLFAGDLLQMYQKYAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|163787722|ref|ZP_02182169.1| peptide chain release factor 1 [Flavobacteriales bacterium ALC-1] gi|159877610|gb|EDP71667.1| peptide chain release factor 1 [Flavobacteriales bacterium ALC-1] Length = 358 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 232/354 (65%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++I +K RF E+ + + + Y KL +EY I+ K ++Y + + Sbjct: 1 MLEKIQIIKQRFDEVNDLIIQPDIISDQKRYAKLMKEYKDFKLIVDKGAVYKEALDNVAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D + D E+ ++A++++ + I +LE EI ++L+PKD DD K+ ++E+RAGTG Sbjct: 61 AEEIITDGSDD-EMVEMAKMQLDEAKDTIEKLEEEIRFMLIPKDPDDAKNVVVEVRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y + + W+V+V+S SD GG+KE++ +SG V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYSKYCSDKGWRVDVVSQSDGTSGGFKEVIFEVSGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E D ++ + ++RI+ ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDYELDMTEVRIERTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+++ H PTG++V +KS H+N +A+KVLR+RLY+ E + S RK + SG Sbjct: 240 SAIKLHHEPTGMIVSCQDQKSSHKNLEKALKVLRSRLYERELAKRQAADSEKRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS +IRTYN+ QGR+TDHRI LTLY L ++ G I II+ L+ A +++ + Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLTNIINGDIQKIIDELMLAENTELLKA 353 >gi|260438934|ref|ZP_05792750.1| peptide chain release factor 1 [Butyrivibrio crossotus DSM 2876] gi|292808585|gb|EFF67790.1| peptide chain release factor 1 [Butyrivibrio crossotus DSM 2876] Length = 358 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 241/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ ++ +I + ++ + L +E + ++P++ + Y + Q+ +D Sbjct: 3 ENLEEILIKYEDINMELASPDVTSDQRRFRNLMKEQSDLTPLVEAYTAYKKANQDIKDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N + L + A +K LE +I LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 EMLEEENDEEMREMLKEELSSAKDKVAE-LEEKIKILLLPKDPNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +LFRMY YA R+WKVEV++S + GG KE+ ++G+G +S +K+ESGVH Sbjct: 122 EAALFAAELFRMYTHYAEARRWKVEVVNSDETGIGGMKEVEFMVTGQGAYSVLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS A+VAV+PEA E++V I +DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTASVAVMPEAEEVEVQIDEKDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI++ + +EKSQ QN+ +A +LRA+LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHYPTGIVIYSQTEKSQIQNKEKAFALLRAKLYDMECQKAHDAEADARRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYKL+ +L G I +II+ + A QA + + Sbjct: 302 SEKIRTYNFPQGRVTDHRIGLTLYKLDKILNGDIQEIIDACIAADQAAKLSKMED 356 >gi|121603686|ref|YP_981015.1| peptide chain release factor 1 [Polaromonas naphthalenivorans CJ2] gi|166223585|sp|A1VKB6|RF1_POLNA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120592655|gb|ABM36094.1| bacterial peptide chain release factor 1 (bRF-1) [Polaromonas naphthalenivorans CJ2] Length = 373 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 166/367 (45%), Positives = 239/367 (65%), Gaps = 11/367 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + R E++ +S S V D + LT E+A S + + + ++ Sbjct: 1 MKPFLRHTLDRQLLRLHELDALLSASDVVSDLDRFRALTREHAEASVVAEQYNRLTAREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ + +D ++ ++A+ E+ A + +I +L+ + +L+PKD DD ++ +EIR Sbjct: 61 DLASAESMLAEAKNDPDMAEMAEEEINAAKTDIAQLDEALQLMLIPKDPDDRRAAFIEIR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------ 171 AGTGG E+ALF GDLFR+Y R+A ++W+VE++S S ++ GGYKE+V I G Sbjct: 121 AGTGGDESALFAGDLFRLYTRFAERKRWQVEIISESPSELGGYKEVVLRIDGPTDAMGVG 180 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRAS 230 V+ +++FESG HRVQRVPATE GR+HTSA TVAVLPE E + I D+RIDT RAS Sbjct: 181 VYGKLRFESGGHRVQRVPATETQGRIHTSACTVAVLPEPDETVAIQINPADLRIDTYRAS 240 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQH+N TDSAVRITH+PTGI+ +SQH N+ +AMKVL AR+++ ER A + Sbjct: 241 GAGGQHINKTDSAVRITHLPTGIVAECQEGRSQHGNKAQAMKVLTARIHEKERSAQAAKD 300 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +A RK IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G +DD++ L A A Sbjct: 301 AAMRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLTIMEGDLDDVVTALQVARGA 360 Query: 350 KMIGSAS 356 + + Sbjct: 361 EQLNELE 367 >gi|254293181|ref|YP_003059204.1| peptide chain release factor 1 [Hirschia baltica ATCC 49814] gi|254041712|gb|ACT58507.1| peptide chain release factor 1 [Hirschia baltica ATCC 49814] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 182/358 (50%), Positives = 260/358 (72%), Gaps = 1/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M +S +++ + +RF + E RMS + ++L++++A + + K ++ Sbjct: 1 MAAVSAERLTQVIDRFEQTEARMSVATDPTEIVQLSKDHAELKLVADKARELMDAREALA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D +SD+++++LAQ E ++ + ELE + LLLPKD DD+ + +LE+RAGT Sbjct: 61 EADAILSDKDSDADMKELAQEEREELKSSLPELEQSLQLLLLPKDEDDEANAMLEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLFRMY+RYA ++ WK+++ S S+ D GGYKEI+A+++G+GVF +MKFES Sbjct: 121 GGDEAALFAGDLFRMYQRYAQIQGWKLDIESQSEGDAGGYKEIIASVTGKGVFGKMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE++GR+HTSAA+VAVLP +++++I E+IRIDTMR+SG+GGQHVNTT Sbjct: 181 GVHRVQRVPKTESAGRIHTSAASVAVLPAPEQVNIEIKPEEIRIDTMRSSGAGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRI H+PT IMVTSSEKSQH NR RAM++L+ RLY+ ER + RK Q+GSG Sbjct: 241 DSAVRIIHLPTNIMVTSSEKSQHANRARAMEMLKIRLYEKERAEKDAAMADARKTQVGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 DRSE+IRTYNF + R++DHRI LTLYKLE +L G I ++I+ L+ QA + + E Sbjct: 301 DRSEKIRTYNFPENRVSDHRIKLTLYKLEQILAGDSISEVIDALIAEDQAARLAAMEE 358 >gi|326571210|gb|EGE21234.1| peptide chain release factor 1 [Moraxella catarrhalis BC7] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 170/361 (47%), Positives = 246/361 (68%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +RF E+ + +S+ ++ + +L+ E++ +S I + + Q + Sbjct: 1 MKESLRHRLDQMVDRFEEVTVLLSDPDTISDNKKFRELSMEHSDLSEITTTWQDFVQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + ++ SD E++++A E+ I LE +N ++LPKD +D + LEIR Sbjct: 61 DLQTANELL----SDPEMKEMALDEIEVARANIETLEERLNVMMLPKDPNDKATAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY++Y + W+VEVLS+++ + GGYKEI+A +SG GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSANEGEHGGYKEIIARVSGIGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE D +I D+RIDT R+SG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAVMPEVEIDDTVEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTG++ E+SQH N+ +AMK+L AR+ + + + S R+ Sbjct: 237 VNTTDSAVRITHIPTGVVAECQQERSQHANKEKAMKMLVARIQQAKVQAQIDATSDMRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ +++G + ++++ LL H A ++ S Sbjct: 297 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLLREHHADLMASV 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|326692970|ref|ZP_08229975.1| peptide chain release factor 1 [Leuconostoc argentinum KCTC 3773] Length = 357 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 141/359 (39%), Positives = 221/359 (61%), Gaps = 9/359 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQE 58 Q + + +R+ E+ ++++ K L++E + + + Y Q QE Sbjct: 1 MDPIFQSLQTVVDRYDELNEQLADPEVASDGQKYMALSKEAGEMRETVEVYTRYQQVIQE 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 Q+ ++ D+E+ LA+ ++ ++ E +LE+++ L+LPKD +DDK+ I+EIR Sbjct: 61 IQEAEELL----DDAEMAPLAKEDLADLKPEKAQLEDQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA ++W + ++ S + GGYKE+ I+G V+S++KF Sbjct: 117 AVGGDESSLFAADLLDMYRRYAEKQRWTLSIIDESMTEVGGYKEVAVMITGDNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP+TE GRVHTS ATV V+PE +ID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPSTETQGRVHTSTATVGVMPEFEDIDFELAESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTGIMV E++Q +NR +A K+L +R+YD ++ + RK + Sbjct: 237 KVSTAVRLVHKPTGIMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNEAAYAEQRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ V+ G + ++I+ L+ A Q + + Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELGEVIDALIIADQTAKLAELN 355 >gi|291334339|gb|ADD93998.1| peptide chain release factor 1 [uncultured marine bacterium MedDCM-OCT-S11-C310] Length = 355 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 169/353 (47%), Positives = 240/353 (67%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++ R+ E+ +++ + + +E+ + ++ Y Q + + QD Sbjct: 4 KLAEVEARYEELNRLLADPVVLSDQNRLRDVAKEHREVEELVEIYRSYRQLETQIQDNKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D D E+ +LA+ E+ +E E++ L ++IN LL+PKD +DDK+ +LEIRAGTGG E Sbjct: 64 LIADGE-DPELTELAKEELPELETELQNLTDKINVLLMPKDPNDDKNVLLEIRAGTGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA W+V+V+S S+ GG KE++ + F +K+ESGVHR Sbjct: 123 AALFAGDLFRMYSRYAERSGWRVDVMSMSEGTQGGVKEVIVWLRATTFFC-VKYESGVHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTSAATVAV+PEA E ++DI ED+RIDT R+ G+GGQHVNTTDSAV Sbjct: 182 VQRVPATESQGRIHTSAATVAVMPEAEEAEIDIRNEDLRIDTYRSQGAGGQHVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG++V EKSQ +NR +AMKVL +RL D R++ A ER+A RK + +GDRS Sbjct: 242 RITHLPTGMVVQCQDEKSQIKNRAKAMKVLSSRLLDFIRQKEAAERAAERKELVRTGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYNF Q RITDHRI + + L VLQG ++ ++ L T Q++ + Sbjct: 302 EKIRTYNFPQDRITDHRIGFSAHNLPAVLQGDLEAVLIALRTYFQSEELKGQE 354 >gi|15900891|ref|NP_345495.1| peptide chain release factor 1 [Streptococcus pneumoniae TIGR4] gi|111658249|ref|ZP_01408941.1| hypothetical protein SpneT_02000563 [Streptococcus pneumoniae TIGR4] gi|20139341|sp|Q97R20|RF1_STRPN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|14972493|gb|AAK75135.1| peptide chain release factor 1 [Streptococcus pneumoniae TIGR4] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 157/358 (43%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQVVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ +LA+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEELAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|261880577|ref|ZP_06007004.1| peptide chain release factor RF1 [Prevotella bergensis DSM 17361] gi|270332696|gb|EFA43482.1| peptide chain release factor RF1 [Prevotella bergensis DSM 17361] Length = 369 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 222/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E++ +++ + Y+KLT+EY +S I+ Y ++ Sbjct: 8 EKLDGLESRFEEVKTLITDPSVIADQKRYVKLTKEYKDLSDIMDARKRYIDCLNAIKESK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD++++++A+ E+ E +LE EI L+PKD +D K+ +EIRAG GG Sbjct: 68 DIMT-NESDADMKEMAREELSINESLQPQLEEEIKMALVPKDPEDAKNVQMEIRAGAGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+++ + W V V S S+ GGYKEI +SG V+ +K+ESGVH Sbjct: 127 EAALFAGDLFNMYKKFCDTKGWSVSVTSVSEGSVGGYKEIDFAVSGDNVYGVLKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 187 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 246 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ L +YD ER + N+ S+ RK Sbjct: 247 VRLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLYTYIYDHERSKYLNDISSRRK 306 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGRITDHRI T + L+ L G I D+I+ L A A+ + Sbjct: 307 SLVSTGDRSAKIRTYNFPQGRITDHRIGYTTHDLQGFLGGDIQDMIDHLTVAENAEKLKE 366 >gi|78185965|ref|YP_374008.1| peptide chain release factor 1 [Chlorobium luteolum DSM 273] gi|119361573|sp|Q3B6R6|RF1_PELLD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78165867|gb|ABB22965.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium luteolum DSM 273] Length = 358 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 231/355 (65%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K R ++E +++ + +L +EY+ + I+ Y +Q+ ++ Sbjct: 3 DKLQSIKERHLDLERMLADPAAAGDQTRFRRLNKEYSDLKEIVQAYDRYASARQQLEESR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E++ +A+ E+L +E+ I LE E+ LLLPKD D ++ I+EIRAGTGG Sbjct: 63 HM-QKAEEDPEMKAMAREEMLELEERIPGLEQELRILLLPKDEADSRNVIMEIRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDN-DDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA + W+ EVL +++ GG++E+ TISG V+ +K+ESGV Sbjct: 122 EAALFAADLMRMYQRYAERQGWRCEVLDYNESSGPGGFREVTLTISGHDVYGTLKYESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I +D+R DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPETETQGRIHTSAASVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTG++ E+SQ QN+ RAMK+L A+LYD++ + ER+ R+ + SGD Sbjct: 242 AVRITHEPTGLVAACQEERSQLQNKERAMKMLMAKLYDIKLQEQQQERADMRRTMVASGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RS +IRTYN+ Q R+TDHRI T + L + +QG I ++I+ L Q + + A+ Sbjct: 302 RSAKIRTYNYPQSRVTDHRIGFTSHGLPHFMQGEIGELIDALKMHDQTERLQEAA 356 >gi|310644400|ref|YP_003949159.1| peptide chain release factor 1 [Paenibacillus polymyxa SC2] gi|309249351|gb|ADO58918.1| Peptide chain release factor 1 [Paenibacillus polymyxa SC2] Length = 355 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 238/354 (67%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + KL ++E + + P + Y +E Sbjct: 1 MLDRLQSLADRYDKLSELLCDPDVANDSKKLRDYSKEQSDLQPAYEAYTEYKTVVEELDA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D E+R++ ++E+ + REL+ +I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKAMQAEKLDD-EMREMVKMEIEELSARKRELDEKIRILLLPKDPNDDKNVIIEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + W+VE++ ++ ND GG+KE++ I+GRG +S+MKFESG Sbjct: 120 GDEAALFAADLYRMYTRYADTQGWRVELMDANMNDLGGFKEVIFMINGRGAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TV+V+PEA E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPTTESGGRIHTSTSTVSVMPEAEEVDIEILDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+ KSQ+ N+ +A++VLRAR+ D+ R+ + + RK ++G+G Sbjct: 240 SAVRVTHMPTGIVATCQDGKSQNSNKEKALQVLRARISDMMRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF Q R+TDHRI LT++KL+ V+ G I++I++ L A QA ++ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTMHKLDQVMNGEIEEIVSALTIAEQADLMEQ 353 >gi|116493078|ref|YP_804813.1| peptide chain release factor 1 [Pediococcus pentosaceus ATCC 25745] gi|116103228|gb|ABJ68371.1| bacterial peptide chain release factor 1 (bRF-1) [Pediococcus pentosaceus ATCC 25745] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 157/357 (43%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 +++ + +R+ E+ +++ + Y +L++E I + K Y + Sbjct: 1 MDIIEKVQAVADRYEELSELLADPEVLGDSQRYQELSKEEGEIRETVEKYREYRKTVDAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + D E+ L + E+ + + LE EI L+LP D +DDK+ I+EI Sbjct: 61 AENEEL-QREKLDPEMDSLVKAELAELRETKATLEEEIKILMLPTDPNDDKNIIMEIHGA 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LF DL+ MY RYA + WKVEV+ + D GG+KEIV ISG V+S++K+E Sbjct: 120 AGGDEASLFAADLYNMYTRYAETQGWKVEVVDENATDVGGFKEIVLMISGNKVYSKLKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +G HRVQRVP TE++GRVHTS +TV V+PEA ++D++I +DIR D R+SG+GGQH+N Sbjct: 180 NGAHRVQRVPVTESAGRVHTSTSTVGVMPEAEDVDIEIDQKDIRTDVYRSSGAGGQHINK 239 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD + + + +A RK +G Sbjct: 240 TSSAVRMTHLPTGIVVAMQDERSQQQNREKAMRILKARVYDYYQTQEEDAYNAERKSAVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GDRSERIRTYNF Q R+TDHRI LTL KL+ V+ G +DDII+ L+ QAK + Sbjct: 300 TGDRSERIRTYNFPQNRVTDHRIGLTLNKLDRVMNGELDDIIDALILDDQAKKVEQL 356 >gi|284007355|emb|CBA72733.1| peptide chain release factor 1 [Arsenophonus nasoniae] Length = 349 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 172/351 (49%), Positives = 247/351 (70%), Gaps = 9/351 (2%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 ++ R+ EI+ + ++ + + L++EYA ++ + + +Q+ + T++ Sbjct: 1 MQERYEEIQAHLVDAEVIADQERFRALSKEYAQLTDVTKCFQSWRAVQQDIETAETLL-- 58 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E+R++AQ E+ +K E E ++ LLLPKD DD+K+C LEIRAGTGG EAA+F Sbjct: 59 --HDPEMREMAQEELKEAKKRNEEFEQQLQILLLPKDPDDEKNCFLEIRAGTGGDEAAIF 116 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 GDLFRMY RYA R+W++EV+++S+ + GGYKEI+A +SG V+ R+KFESG HRVQRV Sbjct: 117 AGDLFRMYNRYAESRRWRIEVMNASEGEHGGYKEIIAKVSGDSVYGRLKFESGGHRVQRV 176 Query: 189 PATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 P TE+ GR+HTSA TVA+L E + DI D+RIDT R+SG+GGQHVNTTDSA+RIT Sbjct: 177 PETESQGRIHTSACTVAILAEIPATELPDINPSDLRIDTFRSSGAGGQHVNTTDSAIRIT 236 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGI+V E+SQH+N+ +A+ VL AR+ E ++ ++ R+ +GSGDRS+RI Sbjct: 237 HIPTGIVVECQDERSQHKNKAKALSVLAARIRAAEVQKRREAEASERRNLLGSGDRSDRI 296 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RTYNF QGRITDHRINLTLY+L+ V++G +D +I P++ +QA + + SE Sbjct: 297 RTYNFPQGRITDHRINLTLYRLDEVIEGKLDMLIQPIINEYQADQLSALSE 347 >gi|330823524|ref|YP_004386827.1| peptide chain release factor 1 [Alicycliphilus denitrificans K601] gi|329308896|gb|AEB83311.1| Peptide chain release factor 1 [Alicycliphilus denitrificans K601] Length = 371 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 241/361 (66%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R +E++ +S + Y ++ E+A ++ + + + Y Q++ Sbjct: 12 MKPFLRSQLERYAQRLSELDFLLSREDIMADMQQYRAISREHADVTAVAGRYARYRQREA 71 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D ++ ++AQ E+ A E E+ +LE+E+ +LLPKD DD+++ +EIR Sbjct: 72 DLEGAREMLE----DPDMAEMAQEEIAAAEAELAQLEDELQRMLLPKDPDDERNAFVEIR 127 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA + WKVEV+S+++++ GGYKE+V I G + R++ Sbjct: 128 AGTGGDESALFAGDLARMYTRYAATQGWKVEVMSANESELGGYKEVVLRIEGDHAYGRLR 187 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT RASG+GGQH Sbjct: 188 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEAQAITLNPADLRIDTFRASGAGGQH 247 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 248 INKTDSAVRVVHLPTGIVAECQDGRSQHANKAKALQVLQARIQEKERSERAAKEAALRKG 307 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL V++G + +++ L A +A+++ Sbjct: 308 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAVMEGDLGEVLQALQHAREAELLAEL 367 Query: 356 S 356 Sbjct: 368 E 368 >gi|195978153|ref|YP_002123397.1| peptide chain release factor 1 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225868513|ref|YP_002744461.1| peptide chain release factor 1 [Streptococcus equi subsp. zooepidemicus] gi|238689817|sp|B4U317|RF1_STREM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|259585255|sp|C0MF07|RF1_STRS7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|195974858|gb|ACG62384.1| peptide chain release factor 1 PrfA [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225701789|emb|CAW99200.1| peptide chain release factor 1 [Streptococcus equi subsp. zooepidemicus] Length = 360 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMALSKEEASTRETVAAYRQYKAIIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D +I ++A+ E+ + E+++ LLLPKD +DDK+ ILEIR Sbjct: 61 DDAEEMIKEAGGDPDIEEMAKEELKEAKAAKETYEDKLKLLLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEIVDALVLYDQTQKLESLN 358 >gi|225861003|ref|YP_002742512.1| peptide chain release factor 1 [Streptococcus pneumoniae Taiwan19F-14] gi|298230460|ref|ZP_06964141.1| peptide chain release factor 1 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255330|ref|ZP_06978916.1| peptide chain release factor 1 [Streptococcus pneumoniae str. Canada MDR_19A] gi|298502960|ref|YP_003724900.1| peptide chain release factor 1 [Streptococcus pneumoniae TCH8431/19A] gi|254790904|sp|C1CRE0|RF1_STRZT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225726985|gb|ACO22836.1| peptide chain release factor 1 [Streptococcus pneumoniae Taiwan19F-14] gi|298238555|gb|ADI69686.1| peptide chain release factor 1 [Streptococcus pneumoniae TCH8431/19A] gi|327389396|gb|EGE87741.1| peptide chain release factor 1 [Streptococcus pneumoniae GA04375] gi|332201491|gb|EGJ15561.1| peptide chain release factor 1 [Streptococcus pneumoniae GA47368] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+ E E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMLEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 358 >gi|220920161|ref|YP_002495462.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060] gi|254790889|sp|B8IUB4|RF1_METNO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219944767|gb|ACL55159.1| peptide chain release factor 1 [Methylobacterium nodulans ORS 2060] Length = 359 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 186/359 (51%), Positives = 250/359 (69%), Gaps = 5/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M+ + ++ + R + +S +++++L+ E + + +++ I Y E Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAADAEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + ++ D E+R LA E +E + LLLPKD+ D+KS ILEIRAG Sbjct: 61 RGVEAML--EEGDPEMRALAAEEKPEVEAARDAAAKALQILLLPKDSADEKSAILEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY RYA L+ WKVEV+S S GGY+E+VA + GRGVF+R+KFE Sbjct: 119 TGGDEAALFAGDLFRMYARYADLKGWKVEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+D+ + D++IDTMRA G+GGQHVN Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITH+P+GI+V E+SQH+NR RAM VLRARLY+ ER + R+A+R+ Q+G Sbjct: 239 TESAIRITHMPSGIVVFVQEERSQHKNRARAMAVLRARLYEQERSQKDAARAADRRAQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE VL G +D++++ L+T HQA ++ + Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVLAGTALDELVDALVTEHQAALLAAEG 357 >gi|227499754|ref|ZP_03929854.1| peptide chain release factor RF1 [Anaerococcus tetradius ATCC 35098] gi|227218140|gb|EEI83406.1| peptide chain release factor RF1 [Anaerococcus tetradius ATCC 35098] Length = 358 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 160/355 (45%), Positives = 227/355 (63%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I +K + ++E +M + + K+T EY ++ PI+ K + ++ Sbjct: 3 ENIEHIKENYKDLEKKMIDPEVLADISRLTKITREYNSLKPIVEKYDQIKDAESTIEENK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + D ++ D+ + E+ EK + + E+ LL+PKD +D + I+EIR G GG Sbjct: 63 ELINEA-DDQDMIDMLKEEIKENEKLLDQYNEEMKILLIPKDPNDSRDVIVEIRPGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL+RMY YA +K E + + GG K+ + G G +SR K+ESGVH Sbjct: 122 EAGLFAGDLYRMYHMYADKEGYKTEDVEVTPQGVGGIKDATFMVRGEGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E+DV + DIR D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVDELDVHVDPNDIRTDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ EKSQ +N+ +AMK+L AR+Y++E ++ E + NRK Q+G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDEKSQIKNKEKAMKILLARIYELEEEKRNKEIADNRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGRITDHRIN T+Y+L+ L G I ++I+ L+ Q + + E Sbjct: 302 SERIRTYNFPQGRITDHRINKTIYQLDDFLNGGIGEMIDSLIAEDQTRKLEKIGE 356 >gi|27375329|ref|NP_766858.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110] gi|32171530|sp|Q89XT9|RF1_BRAJA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|27348465|dbj|BAC45483.1| peptide chain release factor 1 [Bradyrhizobium japonicum USDA 110] Length = 361 Score = 270 bits (689), Expect = 3e-70, Method: Composition-based stats. Identities = 190/349 (54%), Positives = 250/349 (71%), Gaps = 2/349 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E + + Y+++T E A I+P+I + Y +E Sbjct: 1 MSSLPEAKLDVLLAHHASLEAESLGQLASERYVQITRELAEITPLIEAVKTYRSAVKELA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D +I D +D+E+R +A+ E + I +L +I LLPKD DD++ +LEIRAGT Sbjct: 61 DTEALIADPATDAEMRGMAEAERDELAPRIEDLVQKIRVALLPKDAMDDRNVVLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYER+A+L+ WKVEV+S+S+ GGYKEI+A + GRG FS++KFES Sbjct: 121 GGDEASLFAGDLFRMYERFASLQGWKVEVISASEGTVGGYKEIIAEVQGRGAFSKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE ++DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEDVDVDIKNDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITHIPTGI+V +SQH+NR AM +LR+R+YD ER+R+ RSA RK ++GS Sbjct: 241 ESAIRITHIPTGIVVMMQDSRSQHKNRASAMNILRSRIYDAERQRVDAARSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T H Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEH 349 >gi|322517017|ref|ZP_08069906.1| peptide chain release factor RF1 [Streptococcus vestibularis ATCC 49124] gi|322124434|gb|EFX95931.1| peptide chain release factor RF1 [Streptococcus vestibularis ATCC 49124] Length = 359 Score = 269 bits (688), Expect = 3e-70, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMELSREEANTRETVTVYREYKQVIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D ++ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKEASGDPDLEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ +V+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKYAETQGWRFDVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKMDEVIDALVLYDQTQKLEELN 358 >gi|313888275|ref|ZP_07821946.1| peptide chain release factor 1 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845678|gb|EFR33068.1| peptide chain release factor 1 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 355 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +++ E+E +S ++ Y + E+A I PI++K Y + + Sbjct: 3 EKLSVFEDKLIELEKDLSSVEVINDSKLYQQKAIEHAEIEPIVTKYRAYKETLNSLNENK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + D + +DL + E+ K++ ELENE+ LL+PKD +D K+ ++EIRAG GG Sbjct: 63 ELIKEKLDD-DFKDLVREEINEATKKVEELENELKILLIPKDKNDSKNVMVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G L+R Y RYA ++VE +SS++ GGYKEIV I G G +SR+K+ESGVH Sbjct: 122 EAALFAGVLYRQYVRYAERSGFRVETISSNEIGIGGYKEIVFMIIGNGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPEA ++D++I I+ D RASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEAEDVDIEIDPTQIKFDVFRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI++ EKSQ +N+ +AMK+LR++LYD++ + + + S R QIG+GDR Sbjct: 242 VRLTHIPTGIVISCQDEKSQLRNKEKAMKLLRSKLYDLKLQEQSEKESMERSSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ QGR+TDHRINLT ++++ + G +D+II+ L+T Q + I S Sbjct: 302 SERIRTYNYPQGRVTDHRINLTSHRIDAINDGDLDEIIDALITYDQTQKIEKIS 355 >gi|91786752|ref|YP_547704.1| peptide chain release factor 1 [Polaromonas sp. JS666] gi|119361575|sp|Q12F86|RF1_POLSJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91695977|gb|ABE42806.1| bacterial peptide chain release factor 1 (bRF-1) [Polaromonas sp. JS666] Length = 373 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 163/367 (44%), Positives = 236/367 (64%), Gaps = 11/367 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + + R E++ +S + V D + LT E+A S + + + ++ Sbjct: 1 MKPFLRQTLDRQLLRLHELDSLLSATDVVSDLDRFRALTREHAEASVVAEQYTRLTSREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + D E+ +A+ E+ A + +I +L+ + +L+PKD DD ++ +EIR Sbjct: 61 DLASAEGMLAEAKDDPEMAAMAEEEIAAAKLDIAQLDEALQLMLIPKDPDDARAAFIEIR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------ 171 AGTGG E+ALF GDLFRMY R+A +W+VE++S S ++ GGYKE+V + G Sbjct: 121 AGTGGDESALFAGDLFRMYTRFAERNRWQVEIISESPSELGGYKEVVLRMDGPTDATGVG 180 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRAS 230 V+ +++FESG HRVQRVPATE GR+HTSA TVAVLPE E + I D+RIDT RAS Sbjct: 181 VYGKLRFESGGHRVQRVPATETQGRIHTSACTVAVLPEPDEAVAIQINPADLRIDTYRAS 240 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQH+N TDSAVRITHIPTGI+ ++SQH+N+ +A++VL AR+ + +R A + Sbjct: 241 GAGGQHINKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIVEKDRSERAAKD 300 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +A RK +GSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + D+I L A A Sbjct: 301 AAMRKGLVGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGDVITALQVARGA 360 Query: 350 KMIGSAS 356 + + Sbjct: 361 EQLAELE 367 >gi|288928094|ref|ZP_06421941.1| peptide chain release factor 1 [Prevotella sp. oral taxon 317 str. F0108] gi|288330928|gb|EFC69512.1| peptide chain release factor 1 [Prevotella sp. oral taxon 317 str. F0108] Length = 370 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 145/370 (39%), Positives = 223/370 (60%), Gaps = 17/370 (4%) Query: 3 FLSHK----QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQK 55 + ++ L++R+ E+ +++ + Y+KLT EY + I++ Y Sbjct: 1 MIEQNSILTKLDGLESRYEEVSTLITDPAVIADQERYVKLTREYKDLGDIMNARKRYVAC 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + ++ + SD+E++++A+ E+ A E E +LE EI LL+PKD +D K+ +E Sbjct: 61 LNSIAEAKDILA-NESDAEMKEMAREELSANETERPKLEEEIKLLLVPKDPEDAKNVQME 119 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAGTGG EAALF GDLF MY+R+ + W + V +SS+ GG+KEI +SG V+ Sbjct: 120 IRAGTGGDEAALFAGDLFGMYKRFCDSKGWNLSVTASSEGAVGGFKEIDFAVSGDNVYGV 179 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +K+ESGVHRVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ Sbjct: 180 LKYESGVHRVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQ 239 Query: 236 HVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 +VN +S VR+ + ++ + + Q +N+ RA+ LR +YD E ++ Sbjct: 240 NVNKVESGVRLRYPWKNPNTGETEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYV 299 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 ++ + RK + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I +I+ L A Sbjct: 300 DDIANRRKSLVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFIAGDIQAMIDALSVA 359 Query: 347 HQAKMIGSAS 356 + + A Sbjct: 360 ENTERMKEAE 369 >gi|22537235|ref|NP_688086.1| peptide chain release factor 1 [Streptococcus agalactiae 2603V/R] gi|32171547|sp|Q8DZM4|RF1_STRA5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|22534102|gb|AAM99958.1|AE014241_9 peptide chain release factor 1 [Streptococcus agalactiae 2603V/R] Length = 359 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A+ ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEASTRETVTAYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+E+ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDAELEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDQKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTQKLEALN 358 >gi|154174699|ref|YP_001407404.1| peptide chain release factor 1 [Campylobacter curvus 525.92] gi|166223540|sp|A7GW12|RF1_CAMC5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|112802322|gb|EAT99666.1| peptide chain release factor 1 [Campylobacter curvus 525.92] Length = 355 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 179/355 (50%), Positives = 246/355 (69%), Gaps = 9/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +R+ EI + + ++ K L++E ++I PI + S Y Q + ++ Sbjct: 4 DKLRPFLDRYNEISALLGDPNIINDIEKMTKLSKEQSSIEPIKNAASQYLQTLDDIEENK 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D+E+ +LA+ E+ + + ELENEI LLLPKD +DDK+ LEIRAGTGG Sbjct: 64 ALL----DDAELGELAREELKSAQIRKEELENEIKILLLPKDPNDDKNIFLEIRAGTGGD 119 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFVGDLF Y RYA LR +K E++S S+ GG+KEI+ I G+G +SR+KFE G H Sbjct: 120 EAALFVGDLFNAYIRYADLRGYKFEIVSQSEGSAGGFKEIILLIKGKGAYSRLKFEGGTH 179 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTSA TVA++PE + +++I D+RID MR+SG GGQ VNTTDSA Sbjct: 180 RVQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDLRIDVMRSSGHGGQSVNTTDSA 239 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++VT KSQH+N+ AMKVL+ARLY+++ + ++ RK Q+G+GDR Sbjct: 240 VRITHIPTGLVVTNQDGKSQHKNKEAAMKVLKARLYEMQEAERIAKETSERKSQVGTGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 S RIRTYNF Q RI+DHRINLTLY+L+ ++ G + D+II PL+ HQA+ I A Sbjct: 300 SGRIRTYNFPQNRISDHRINLTLYRLDAIMAGGLFDEIIEPLIAHHQAEAITDAG 354 >gi|58584615|ref|YP_198188.1| peptide chain release factor 1 [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75497913|sp|Q5GSS8|RF1_WOLTR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|58418931|gb|AAW70946.1| Protein chain release factor A [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 359 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 184/359 (51%), Positives = 250/359 (69%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + DLK +F IE ++ ++ +I L++EY+ + PII I+ YD K+E Sbjct: 1 MDIENNLQDLKRKFNYIERKLENPTNLSQKEFINLSKEYSELRPIIKIINEYDTLKKEIL 60 Query: 61 DLHTVIGDHNSDSEIRD-LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 DL +I D NS+ +I++ + + + +++ ++ LLPKD DD ++ ILEIRAG Sbjct: 61 DLEEIIKDENSEYDIKELAKEEFFEKQKVLLPQVKAKLKLALLPKDEDDSRNAILEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF LFRMY++YA R WK E +S S GGYKE A I+G VF+R+KFE Sbjct: 121 TGGEEAALFAAMLFRMYQKYAERRNWKFEPISISSTGIGGYKEASALINGTEVFARLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+SGR+HTSAATVA+LPE E+D I +D+RID R+SG GGQ VNT Sbjct: 181 SGVHRVQRVPETESSGRLHTSAATVAILPEVEEVDFKIEEKDLRIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PT ++V EKSQH+N+ +A+KVLRARLY++ER++ ERS RK QIG Sbjct: 241 TDSAVRVTHLPTEMVVIQQDEKSQHKNKAKALKVLRARLYEIERQKKEIERSTMRKSQIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF Q RITDHRINLT ++LE ++ +G +D+ I L++ ++A+ + S Sbjct: 301 SGDRSERIRTYNFPQSRITDHRINLTSHQLEQIIKEGELDEFIEVLISRNEAERLAGES 359 >gi|225870517|ref|YP_002746464.1| peptide chain release factor 1 [Streptococcus equi subsp. equi 4047] gi|254790898|sp|C0MC15|RF1_STRE4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225699921|emb|CAW93851.1| peptide chain release factor 1 [Streptococcus equi subsp. equi 4047] Length = 360 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V ++ L++E A+ ++ Y Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMALSKEEASTRETVAAYRQYKAIIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D +I ++A+ E+ + E+++ LLLPKD +DDK+ ILEIR Sbjct: 61 DDAEEMIKEAGGDPDIEEMAKEELKEAKSAKEAYEDKLKLLLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+RID ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRIDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEIVDALVLYDQTQKLESLN 358 >gi|332521778|ref|ZP_08398229.1| peptide chain release factor 1 [Lacinutrix algicola 5H-3-7-4] gi|332042608|gb|EGI78809.1| peptide chain release factor 1 [Lacinutrix algicola 5H-3-7-4] Length = 358 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 159/357 (44%), Positives = 230/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + Y++L EY + ++ K +Y + + Sbjct: 1 MLEKLQIVKQRFDEVSDLIIQPDIITDQKRYVELNREYKDLRLLMDKRELYLEFTNNLAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD E+ ++A+++ + I ELE EI LL+PKD D K+ ++E+RAGTG Sbjct: 61 AEEIIAD-GSDPEMVEMAKMQYDEAKTAIPELEEEIKVLLIPKDPQDAKNAVVELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y + W+V+ + S+ +GG+KEI +SG V+ +KFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYCESKGWRVDTVDYSEGTNGGFKEIQFEVSGDDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV V PEA E DV+I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVFPEAEEFDVEIDPKDVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++ +KSQH+N+ +A KVLR+RLYD+E + E +A R + SG Sbjct: 240 SAVRLTHEPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDLELAKKMEEDAALRGTMVTSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRI LTLY L ++ G I II+ L+ A + + + S+ Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLSNIVNGDIQKIIDELMLAENTEKLKANSD 356 >gi|170017816|ref|YP_001728735.1| peptide chain release factor 1 [Leuconostoc citreum KM20] gi|238692786|sp|B1MVN7|RF1_LEUCK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169804673|gb|ACA83291.1| Peptide chain release factor 1 [Leuconostoc citreum KM20] Length = 357 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 220/359 (61%), Gaps = 9/359 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQE 58 Q + + +R+ E+ ++++ Y+ L++E + + Y Q Q+ Sbjct: 1 MDPIFQSLQTVVDRYDELNEQLADPEIAGDGQKYMALSKEAGEMRETVETYLHYQQVLQD 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D ++ D+E+ LA+ ++ ++ E LE+++ L+LPKD +DDK+ I+EIR Sbjct: 61 IADAEDLL----DDAEMAPLAKEDLNTLKPEKEALESQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA ++W + ++ + + GGYKE+ I+G V+S++KF Sbjct: 117 AAGGDESSLFAADLLDMYRRYAEKQRWTLSIIDETLTEVGGYKEVAVMITGDNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVPATE GRVHTS ATV V+PE EID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPATETQGRVHTSTATVGVMPEFQEIDFELAESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTGIMV E++Q +NR +A K+L +R+YD ++ E + RK + Sbjct: 237 KVSTAVRLVHKPTGIMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNEAEYAEKRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ V+ G + ++I+ L+ A Q + + Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELGEVIDALVIADQTAKLAELN 355 >gi|25011160|ref|NP_735555.1| peptide chain release factor 1 [Streptococcus agalactiae NEM316] gi|76798425|ref|ZP_00780665.1| peptide chain release factor 1 [Streptococcus agalactiae 18RS21] gi|77408667|ref|ZP_00785400.1| peptide chain release factor 1 [Streptococcus agalactiae COH1] gi|77410552|ref|ZP_00786913.1| peptide chain release factor 1 [Streptococcus agalactiae CJB111] gi|77413289|ref|ZP_00789485.1| peptide chain release factor 1 [Streptococcus agalactiae 515] gi|32171550|sp|Q8E5C3|RF1_STRA3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|23095559|emb|CAD46768.1| peptide chain release factor 1 [Streptococcus agalactiae NEM316] gi|76586220|gb|EAO62738.1| peptide chain release factor 1 [Streptococcus agalactiae 18RS21] gi|77160676|gb|EAO71791.1| peptide chain release factor 1 [Streptococcus agalactiae 515] gi|77163500|gb|EAO74450.1| peptide chain release factor 1 [Streptococcus agalactiae CJB111] gi|77172715|gb|EAO75851.1| peptide chain release factor 1 [Streptococcus agalactiae COH1] gi|319745079|gb|EFV97405.1| peptide chain release factor RF1 [Streptococcus agalactiae ATCC 13813] Length = 359 Score = 269 bits (688), Expect = 4e-70, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+E+ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDAELEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDQKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTQKLEALN 358 >gi|299135937|ref|ZP_07029121.1| peptide chain release factor 1 [Acidobacterium sp. MP5ACTX8] gi|298602061|gb|EFI58215.1| peptide chain release factor 1 [Acidobacterium sp. MP5ACTX8] Length = 356 Score = 269 bits (687), Expect = 4e-70, Method: Composition-based stats. Identities = 165/352 (46%), Positives = 243/352 (69%), Gaps = 6/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ ++ ++ + V K + +++ + P + K Y + + + Sbjct: 3 DRLDQIEERYEDLGRQLGDPTLVSDQKKFQTVAKQHRDLEPTVDKFREYRKLRDGVAEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD+E+R +A+ E+L +E ++ E E+ LLLPKD +DDK+ I+E+RAGTGG Sbjct: 63 AMLTE--SDAEMRAMAEDELLTLEPKLATTEEELKVLLLPKDPNDDKNVIVELRAGTGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LFV ++FRMY R+A KWKVEVLS +D+D GG K++ A G V+S+MK+ESGVH Sbjct: 121 EASLFVAEVFRMYLRFAEQHKWKVEVLSQTDSDVGGLKDVTAIFEGDKVYSQMKYESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSA TVAVLPEA E+DV + +D+RIDT +SG GGQ VNTT SA Sbjct: 181 RVQRVPATETQGRVHTSAITVAVLPEAEEVDVKVEAKDLRIDTFCSSGPGGQSVNTTYSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PT +V EKSQ +NR +AM+VLRARLY+VE +R+ ++ RK Q+G+GDR Sbjct: 241 IRITHLPTNTVVSCQDEKSQIKNREKAMRVLRARLYEVEAERVHQLQAKERKQQVGTGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SE+IRTYNF Q R+TDHRI LT ++L V++G + ++ L+ + A+ + + Sbjct: 301 SEKIRTYNFPQNRLTDHRIGLTNHQLAMVMEGLLQPTVDALIAHYTAERLRA 352 >gi|225849764|ref|YP_002729998.1| peptide chain release factor 1 [Persephonella marina EX-H1] gi|254790894|sp|C0QTI3|RF1_PERMH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225646004|gb|ACO04190.1| peptide chain release factor 1 [Persephonella marina EX-H1] Length = 361 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 175/355 (49%), Positives = 246/355 (69%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + ++E +S+ + KL +E+ + Y + ++ ++ Sbjct: 8 QKLENIDEKLKKLEAALSDPEVLKDQKKLQQVAKEHKETEKLSKLYKEYKKVLKDIEETK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ N D E+R LA+ E+ + + ELE EI LLPKD +D+K+ ILEIR G GG Sbjct: 68 SLLN--NPDEEMRLLAEEELKNLNQRKEELEKEIQIELLPKDPNDEKNVILEIRQGAGGE 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G+LFRMY+RYA + WKVEVLS D GG KE++A I G+G +SR+KFESGVH Sbjct: 126 EAALFAGELFRMYQRYAERKGWKVEVLSMHPTDRGGIKEVIALIKGQGAYSRLKFESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA E+D++I E+++I+TMRASG+GGQHVNTTDSA Sbjct: 186 RVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEELKIETMRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V E+SQ QNR +AM++LRARL D + + R++Q+G+GDR Sbjct: 246 VRITHIPTGIVVSCQDERSQLQNRAKAMQILRARLKDYYDRLEREKIEKERRMQVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q R+TDHRIN T ++L +L G +D+II+ L+ Q + + + SE Sbjct: 306 SEKIRTYNFPQNRVTDHRINYTSHRLHDILDGDLDEIIDQLIAKEQEQKLLAISE 360 >gi|15675118|ref|NP_269292.1| peptide chain release factor 1 [Streptococcus pyogenes M1 GAS] gi|20139346|sp|Q99ZP5|RF1_STRP1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|13622277|gb|AAK34013.1| putative peptide chain release factor 1 [Streptococcus pyogenes M1 GAS] Length = 359 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 160/358 (44%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREETNTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|76788237|ref|YP_329784.1| peptide chain release factor 1 [Streptococcus agalactiae A909] gi|77405475|ref|ZP_00782567.1| peptide chain release factor 1 [Streptococcus agalactiae H36B] gi|119361618|sp|Q3K119|RF1_STRA1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|76563294|gb|ABA45878.1| peptide chain release factor 1 [Streptococcus agalactiae A909] gi|77175872|gb|EAO78649.1| peptide chain release factor 1 [Streptococcus agalactiae H36B] Length = 359 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDAELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDQKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTQKLEALN 358 >gi|298373047|ref|ZP_06983037.1| peptide chain release factor 1 [Bacteroidetes oral taxon 274 str. F0058] gi|298275951|gb|EFI17502.1| peptide chain release factor 1 [Bacteroidetes oral taxon 274 str. F0058] Length = 360 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 167/350 (47%), Positives = 227/350 (64%), Gaps = 5/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L ++F EI +++ + ++KL +EYA + II K Y + Q+ Sbjct: 8 RLDGLSSKFDEISTLITDPAIIADTKRFVKLNKEYADLEKIIKKRDEYSLLLKNLQEATD 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++A+ E+ A+ I LE EI LL+P D D K+ I+EIR GTGG E Sbjct: 68 LLA-TEKDEELREMARQEIDAVTPRIEPLEEEIKLLLVPADPQDGKNAIVEIRGGTGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLF+MY RY R WK EV S ++ GGYKEI+ ++SG V+ +K+ESGVHR Sbjct: 127 AAIFAGDLFKMYARYCESRGWKTEVTSFTEGTMGGYKEIIFSVSGDNVYGTLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTSAATVAVLPEA E D++I DIR D ASG GGQ VNTT SA+ Sbjct: 187 VQRVPATESQGRVHTSAATVAVLPEAEEFDIEIKESDIRTDIFCASGHGGQSVNTTYSAI 246 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+ HIPTGI V EKSQ +N+ +AM LR R+Y++E ++ ++ ++ RK + SGDRS Sbjct: 247 RLVHIPTGITVQCQDEKSQLKNKAKAMTELRTRIYNIEYQKYIDDIASKRKTMVSSGDRS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IRTYN+ QGRITDHRIN T Y L + G I + I+ L A A+ + Sbjct: 307 AKIRTYNYPQGRITDHRINYTAYNLPAFVGGDIQECIDQLTIAENAERLK 356 >gi|94988610|ref|YP_596711.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS9429] gi|94990486|ref|YP_598586.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS10270] gi|94992434|ref|YP_600533.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS2096] gi|94994408|ref|YP_602506.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS10750] gi|139473768|ref|YP_001128484.1| peptide chain release factor 1 [Streptococcus pyogenes str. Manfredo] gi|119361619|sp|Q1JBR9|RF1_STRPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361620|sp|Q1JLQ2|RF1_STRPC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361621|sp|Q1JGV2|RF1_STRPD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361622|sp|Q1J6M1|RF1_STRPF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223610|sp|A2REH9|RF1_STRPG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|94542118|gb|ABF32167.1| bacterial peptide chain release factor 1 (RF-1) [Streptococcus pyogenes MGAS9429] gi|94543994|gb|ABF34042.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Streptococcus pyogenes MGAS10270] gi|94545942|gb|ABF35989.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Streptococcus pyogenes MGAS2096] gi|94547916|gb|ABF37962.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Streptococcus pyogenes MGAS10750] gi|134272015|emb|CAM30254.1| peptide chain release factor 1 [Streptococcus pyogenes str. Manfredo] Length = 359 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 161/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDQKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|183222627|ref|YP_001840623.1| peptide chain release factor 1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912661|ref|YP_001964216.1| peptide chain release factor 1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|238687790|sp|B0SH84|RF1_LEPBA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238687821|sp|B0SQV0|RF1_LEPBP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167777337|gb|ABZ95638.1| Peptide chain release factor 1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781049|gb|ABZ99347.1| Peptide chain release factor 1 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 353 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 156/352 (44%), Positives = 234/352 (66%), Gaps = 2/352 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ ++ IE ++++ + D L++E + ++P+ +K Y + ++ QD + Sbjct: 1 MIDRLKKIQEKYLRIEDELAKATASDTLKNLSKERSRLTPVYTKADEYLKITKDCQDAKS 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D ++ + + E+ EK++ EL E+ +LLP D + KS ++EIRAGTGG E Sbjct: 61 LL-ESENDPDMHSMLKSEIEEGEKKLEELAKELEIMLLPPDPNSGKSILVEIRAGTGGEE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + LF DLFRMY +YA + +VE++ S GGYKEIV ++ + KFESG HR Sbjct: 120 SGLFCADLFRMYNKYADKKGLRVEIIDMSQTGIGGYKEIVFSLDDDKAYDLFKFESGTHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GR+HTSA TVA+LPEA E +V+I D+RID R+SG+GGQHVNTTDSAV Sbjct: 180 VQRIPETESGGRIHTSAVTVAILPEAEEKEVEIKESDLRIDVYRSSGAGGQHVNTTDSAV 239 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V + E+SQ +NR +AM+VLRAR+ D + A +K Q+GSGDRS Sbjct: 240 RITHIPTGIVVASQEERSQIKNRDKAMRVLRARIADQAAETAKLSADALKKAQVGSGDRS 299 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ERIRTYNF QGR TDHRI T + L +++G +D++I+ L+ ++K + A Sbjct: 300 ERIRTYNFPQGRCTDHRIGFTSHNLPAIMEGDLDELIDALIQEDRSKRLAEA 351 >gi|255323257|ref|ZP_05364392.1| peptide chain release factor 1 [Campylobacter showae RM3277] gi|255299780|gb|EET79062.1| peptide chain release factor 1 [Campylobacter showae RM3277] Length = 355 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 175/357 (49%), Positives = 243/357 (68%), Gaps = 9/357 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ E+ +S+ + KL++E + + I S Y Q + + Sbjct: 1 MLADKLQPFLDRYDELSRLLSDPSITNDIANMTKLSKEQSNLEDIASAAKSYLQTLADIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D+E+ +LA+ E+ +E + LE EI LLLPKD +DDK+ LEIRAGT Sbjct: 61 ENKALL----DDAELGELAKDELKNLESQKENLEEEIKILLLPKDPNDDKNVFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLF Y RYA LR +K E++S S+ + GG+KEI+ I G+G +SR+KFE Sbjct: 117 GGDEAALFAGDLFNAYTRYAELRGYKFEIVSQSEGNTGGFKEIILLIKGKGAYSRLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE + +++I D+RID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDLRIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+VT KSQH+N+ AMKVL+ARLY+++ + + ++ RK Q+G+ Sbjct: 237 DSAVRITHIPTGIVVTNQDGKSQHKNKEAAMKVLKARLYEIQEEERLAKETSERKSQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSA 355 GDRS RIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+ +QA+ I A Sbjct: 297 GDRSGRIRTYNFPQNRISDHRINLTLYRLDAIMAAGLFDEIIEPLIAHYQAEAISDA 353 >gi|262199727|ref|YP_003270936.1| peptide chain release factor 1 [Haliangium ochraceum DSM 14365] gi|262083074|gb|ACY19043.1| peptide chain release factor 1 [Haliangium ochraceum DSM 14365] Length = 363 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L+ R+ E+ + ++ + + KL+ E+A ++ +++ Y + + +E + Sbjct: 9 DKMEALERRYQEVSDLLGQNEVISNRSEFTKLSREHAELAKLVAAWQEYRELRTQESEAR 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ SD+E+R+LA+ E+ A+++ + E I LLLPKD +D K+ +LE+RAGTGG Sbjct: 69 AMVA-SESDAEMRELAREELRALQESLEVKEQHIKILLLPKDPNDGKNILLELRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL+RMY RYA + WK E++S SD GG KE V I+G+ V+S +K+ESGVH Sbjct: 128 EAALFAGDLYRMYMRYAERQGWKTEIMSMSDGAAGGMKEAVVLIAGKDVYSSLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRVHTSAATV V+PEA E+D+ + +D+RID R+SG GGQ VNTTDSA Sbjct: 188 RVQRVPATESQGRVHTSAATVVVMPEAEEVDIKLEEKDLRIDVYRSSGPGGQSVNTTDSA 247 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V EKSQH+N+ +AM++LR+R+ DVE + E R+ + SGDR Sbjct: 248 VRVTHLPTGIVVICQDEKSQHKNKAKAMRILRSRVLDVEIAKQEAEERDQRRSMVKSGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF Q R+TDHRINLT + L VL G + D+++ L +Q + + + Sbjct: 308 SEKIRTYNFPQDRLTDHRINLTRHNLSSVLDGDLYDVVDALRAHYQTEALKQQA 361 >gi|312890071|ref|ZP_07749615.1| bacterial peptide chain release factor 1 (bRF-1) [Mucilaginibacter paludis DSM 18603] gi|311297603|gb|EFQ74728.1| bacterial peptide chain release factor 1 (bRF-1) [Mucilaginibacter paludis DSM 18603] Length = 357 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 223/356 (62%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K R+ ++E +S + + ++ +EY ++ ++ + +IY Sbjct: 1 MLDKLEAIKERWQDVERELSSPDIMKDMKRFAQMNKEYKDLTKVVEQYNIYYNVMSNIDS 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D E R++A+ E+ + + ELE +I +L+PKD +D ++ I+EIR GTG Sbjct: 61 NREILATEKDD-EFREMAKAELDELLPQQEELEEKIRLMLIPKDPEDSRNAIVEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY R+ + WK E++ ++ GGYKEIV + + +K+ESG Sbjct: 120 GDEAALFAGDLYRMYIRFCEKQGWKTELVDFTEGTAGGYKEIVFNVLAEDAYGTLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAA+V VLPEA E DVDI + DIR D ASG GGQ VNTT Sbjct: 180 VHRVQRVPDTETQGRVHTSAASVVVLPEADEFDVDIHVNDIRKDLFCASGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+ +KSQ +N +A++VLR+R+Y++E ++ S RK + +G Sbjct: 240 SAVRLTHLPTGIVAQCQDQKSQLKNYDKALQVLRSRIYEMELQKHLEVISKKRKTMVSTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+ QGR+T+HRI LT+Y L V+ G + +I+ L A A+ + S Sbjct: 300 DRSAKIRTYNYPQGRVTEHRIGLTIYNLPEVMNGNLLEIMEALQFAENAEKLQEGS 355 >gi|219850039|ref|YP_002464472.1| peptide chain release factor 1 [Chloroflexus aggregans DSM 9485] gi|254790871|sp|B8G7K1|RF1_CHLAD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219544298|gb|ACL26036.1| peptide chain release factor 1 [Chloroflexus aggregans DSM 9485] Length = 361 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 158/357 (44%), Positives = 218/357 (61%), Gaps = 9/357 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ E+ M++ + E + I++ Y ++ + Sbjct: 3 DKLEAVAQRYDELTQLMAQPEVATNVTLLQQYAREQRELEDIVTTYREYQAAQRAIAEAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R LAQ E+ K + LE ++ LLLP+D +D K I+EIR G GG Sbjct: 63 AMLDE--NDPELRALAQEELDTQRKRLATLEEQLKVLLLPRDPNDSKDVIMEIRQGEGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY R+A R WKVEV S ++N GG KE++ I G G +S++K+E GVH Sbjct: 121 EAALFAADLFRMYTRFAESRGWKVEVDSLTENGIGGIKEVIFQIHGEGAYSQLKYEGGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS ATVAVLPE E +++I ED+RID R++G GGQ VNTTDSA Sbjct: 181 RVQRVPATEARGRIHTSTATVAVLPEVEETEIEIKPEDLRIDVFRSAGHGGQGVNTTDSA 240 Query: 244 VRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 VRI + P ++ +SQ QNR RAM VLRARLY E+++ E A+R Q+GS Sbjct: 241 VRIVYKPGTPEEIVVTCQDGRSQIQNRERAMTVLRARLYAREQEKRQREIGASRLAQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+R+E+IRTYNF Q RITDHRI L VL G +D II L+ A+ + ++ Sbjct: 301 GERAEKIRTYNFPQDRITDHRIGQNFSNLPAVLDGELDKIIEALIVYDTAERLRASG 357 >gi|297182948|gb|ADI19096.1| protein chain release factor a [uncultured alpha proteobacterium HF0070_34A12] Length = 353 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 185/353 (52%), Positives = 249/353 (70%), Gaps = 4/353 (1%) Query: 9 ICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + R E+E R++++ S+ D L+ E + + P+ +I + + + + + Sbjct: 1 MDKVLARRNEVESRLADAASMSPDELASLSRELSELRPVCEQIDLVKRLEGDRDAAVMLA 60 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+E+ ++AQ E+ IE + E N + LLLP+D DD ++ ILE+RAGTGG EAA Sbjct: 61 EEAAEDAEMAEMAQAEIQEIEARLPEEMNSLQLLLLPRDRDDSRNAILEVRAGTGGDEAA 120 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF DLF MY+R+A W+ EV+ S+ GGYKE A I+G VF+R+KFESGVHRVQ Sbjct: 121 LFASDLFGMYQRFAGKHGWRFEVMEVSETGIGGYKEATANIAGSDVFARLKFESGVHRVQ 180 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TEA GR+HTSAATVAVLPEA ++D+D+ D+RID RASG GGQ VNTTDSAVRI Sbjct: 181 RVPETEAGGRIHTSAATVAVLPEAEDVDIDVQESDLRIDVFRASGPGGQSVNTTDSAVRI 240 Query: 247 THIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V+ + KSQH+NR +AMK+LRARLYD ER R+ ER+A+RK Q+GSGDRSER Sbjct: 241 THIPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARLQAERAASRKGQVGSGDRSER 300 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 IRTYNF QGR+TDHRINLTLYKL+ V+ G +D+++ L+ QA+ + E Sbjct: 301 IRTYNFPQGRVTDHRINLTLYKLDKVIAGEALDEVVEALVAEDQAQRLAEGGE 353 >gi|300812481|ref|ZP_07092907.1| peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300496542|gb|EFK31638.1| peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 361 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L+ R+ EI+ M++ + Y+++T+E A + ++ K + K+E Sbjct: 7 QLESLEVRYEEIQEMMADPEVIADTKRYMEITKEEADMREVVQKFRKFKADKEEIAGNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D SD E+ ++A++E +E EI +LE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIAD-GSDPELVEMAKMENSELEDEISQLEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + W V ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAENQGWNVSIVDSEQTEVGGYKRVAIMITGNKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE++GRVHTS ATVAV+PE ++D+D+ ++IR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNRDKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D++I+ L +Q K + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEVIDALTVYYQTKQLEELAE 359 >gi|304382675|ref|ZP_07365169.1| peptide chain release factor RF1 [Prevotella marshii DSM 16973] gi|304336300|gb|EFM02542.1| peptide chain release factor RF1 [Prevotella marshii DSM 16973] Length = 370 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 139/360 (38%), Positives = 223/360 (61%), Gaps = 13/360 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++R+ E+ +++ + Y++LT+EY + I+ Y Q+ Sbjct: 9 QKLDGLESRYEEVATLITDPDVIADQERYVRLTKEYKDLEDIMDARRRYINCINAIQEAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D++++++A+ E+ + E +LE EI L+PKD +D K+ +EIRAGTGG Sbjct: 69 DILN-NETDADLKEMAREELQSNETLQPQLEEEIKIALVPKDPEDAKNVQMEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY+++ + W + + S S+ GG+KEI +SG V+ +K+ESGVH Sbjct: 128 EAALFAGDLFNMYKKFCDSKGWTLSITSVSEGAVGGFKEIDFAVSGTDVYGILKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ ++ RK Sbjct: 248 VRLRYPWKNPNTGETEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYVDDIASRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L+ L G I ++I+ L A A+ + Sbjct: 308 SLVSTGDRSAKIRTYNYQQGRVTDHRIGFTTHDLQGFLAGNIQEMIDALTVAENAERMKE 367 >gi|312863805|ref|ZP_07724043.1| peptide chain release factor 1 [Streptococcus vestibularis F0396] gi|311101341|gb|EFQ59546.1| peptide chain release factor 1 [Streptococcus vestibularis F0396] Length = 359 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 231/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMELSREEANTRETVTVYREYKQVIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D ++ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKEASGDPDLEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKYAETQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKMDEVIDALVLYDQTQKLEELN 358 >gi|116333899|ref|YP_795426.1| peptide chain release factor 1 [Lactobacillus brevis ATCC 367] gi|122269414|sp|Q03QX7|RF1_LACBA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116099246|gb|ABJ64395.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus brevis ATCC 367] Length = 361 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 153/353 (43%), Positives = 233/353 (66%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + +R+ E+ +S+ + ++ L++E + + K Y Q+ D Sbjct: 6 DKLQAVADRYDELNELISDPEVIADTQRFMALSKEEGELRETVDKYHQYQDVTQQIADDD 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+++ + + E+ + + LE +I LLLPKD +DDK+ I+EI GG Sbjct: 66 EMLHDK-LDADMESMIKDELKELTAQKAALEEDIKVLLLPKDPNDDKNIIMEIHGAAGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DLF MY +YA + W++EV+ + + GG+KEIV I+G V+S++K+E+G H Sbjct: 125 EASLFAADLFSMYSKYAERQGWQIEVVDENATEVGGFKEIVMMITGNKVYSKLKYENGAH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D+DI +DIR D R+SG+GGQH+N T SA Sbjct: 185 RVQRVPVTESAGRVHTSTATVGVMPEEEDVDIDIDPKDIRTDVYRSSGAGGQHINKTSSA 244 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ QNR +AM++LRAR+YD +++ + +A RK +G+GDR Sbjct: 245 VRMTHLPTGIVVAMQDERSQQQNRAKAMQILRARVYDYYKQQEESAYNAERKSAVGTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LTL KL+ ++ G +DDII+ L+ + QA + Sbjct: 305 SERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDDIIDALIVSDQAAKLEDL 357 >gi|298529663|ref|ZP_07017066.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans ASO3-1] gi|298511099|gb|EFI35002.1| peptide chain release factor 1 [Desulfonatronospira thiodismutans ASO3-1] Length = 356 Score = 269 bits (687), Expect = 5e-70, Method: Composition-based stats. Identities = 185/342 (54%), Positives = 245/342 (71%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +L+ ++ +IE +S+ + Y KL++ ++ + PI+S Y + E ++ Sbjct: 4 KLDELEQQYMQIETDLSDPEVFSNQEKYRKLSKSHSELGPIVSTYREYRRIVSEMEENRE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D EIR+LAQ E+ +++E LE ++ L+P D DDK+ ILEIRAGTGG E Sbjct: 64 LARD--RDPEIRELAQAELETLQEEKDRLEEDLKIQLVPSDPLDDKNIILEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA R WKVEVL+ + GG KE++A+ISG+ V+SR+K+ESGVHR Sbjct: 122 AALFAADLFRMYFRYAEERSWKVEVLNMQETGTGGIKEVIASISGKKVYSRLKYESGVHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVA+LPEA E+DV+I D+R+D RASG GGQ VNTTDSAV Sbjct: 182 VQRVPETESQGRVHTSAVTVAILPEAEEVDVNIEPNDLRVDVFRASGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V EKSQH+NR +A+KVLR+RL + + E NR+ Q+GSGDRS Sbjct: 242 RITHIPTGLVVSCQDEKSQHKNRAKALKVLRSRLLQIMEEEQKREYDDNRRAQVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 ERIRTYNF Q R+TDHRINLTLY LE V+QG++D II+PL+ Sbjct: 302 ERIRTYNFPQSRVTDHRINLTLYNLESVMQGHLDGIIDPLVQ 343 >gi|189345639|ref|YP_001942168.1| peptide chain release factor 1 [Chlorobium limicola DSM 245] gi|238692166|sp|B3EE55|RF1_CHLL2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189339786|gb|ACD89189.1| peptide chain release factor 1 [Chlorobium limicola DSM 245] Length = 357 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 150/353 (42%), Positives = 232/353 (65%), Gaps = 6/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K + ++E ++++ + + KL +EY+ + I+ Y +++ ++ Sbjct: 3 DKLQSIKEKHLDLEQQLADPSAASDQNRFRKLNKEYSDLKEIVHAFDRYSLARKQLEESR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G D ++R+L Q+E+ +++++ ELE ++ LLLPKD D ++ I+EIRAGTGG Sbjct: 63 ELLG-SEKDPQMRELVQMEIEDLQEKLPELEQQLKVLLLPKDEADSRNVIMEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+RYA + WK +L +++ GG++E+ +SG VF+ MK+ESGV Sbjct: 122 EAALFAADLLRMYQRYAERQGWKCVLLDYTESSVPGGFREVTLEVSGHDVFATMKYESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I +D+R DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPDTETQGRIHTSAASVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+ E+SQ QN+ RAM +LR +LYD++ +R+ R+ + +GD Sbjct: 242 AVRITHLPTGIVAACQEERSQLQNKERAMTMLRTKLYDIQLAEQQQQRADLRRSMVSTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RS +IRTYN+ Q R+TDHRI T + L ++QG I D+I L Q + + Sbjct: 302 RSAKIRTYNYPQSRVTDHRIGFTSHALPQIMQGEIGDVIEALKLHDQTARLQA 354 >gi|294101724|ref|YP_003553582.1| peptide chain release factor 1 [Aminobacterium colombiense DSM 12261] gi|293616704|gb|ADE56858.1| peptide chain release factor 1 [Aminobacterium colombiense DSM 12261] Length = 358 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 247/358 (68%), Gaps = 6/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ DL+ F ++E +MS+ ++ +L +++A I + K Y + K + Sbjct: 1 MNLESKLDDLEKTFVDLEKQMSDPVVAANLKEIQQLAKKHAQIESAVLKYREYKKVKSDL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ H+++ H+ D ++++LA+ E+ E + + +E++ LLLP D +D+KS I+EIR G Sbjct: 61 EEAHSLL--HSGDGDMQELAREEIKEKEPLLECIRDELHVLLLPVDPNDEKSVIMEIRGG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF +L+RMY R+ W++E++ S++ GG KE++ I GRG +S++KFE Sbjct: 119 AGGEEAALFSANLYRMYSRFCEREGWRIEIIQSNETGIGGLKEVIFKIDGRGAYSKLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TEA GR+HTS +TVAVLPE ++DVDI ED++IDT R+SG+GGQHVN Sbjct: 179 SGVHRVQRVPMTEAGGRIHTSTSTVAVLPEVEDVDVDIRTEDLKIDTYRSSGAGGQHVNM 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V E+SQ +NR +AM LRA+LY +E+++ A E++ R+ QIG Sbjct: 239 TDSAVRITHLPTGIVVTCQDERSQIKNRAKAMMYLRAKLYGLEKEKQAEEQAEERRGQIG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYN+ Q RITDHRI LTLYKL+ L G + ++I+ + A Q + + Sbjct: 299 SGDRSERIRTYNYPQNRITDHRIGLTLYKLDQYLDGDLYEMIDAMTMADQTERLQKLG 356 >gi|254497857|ref|ZP_05110623.1| peptide chain release factor 1 [Legionella drancourtii LLAP12] gi|254352935|gb|EET11704.1| peptide chain release factor 1 [Legionella drancourtii LLAP12] Length = 351 Score = 269 bits (687), Expect = 6e-70, Method: Composition-based stats. Identities = 167/350 (47%), Positives = 242/350 (69%), Gaps = 7/350 (2%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + RF E+ +SE+ + + L++EYA + P+ + Y + L ++ Sbjct: 1 MLERFQEVGRLLSEASVIADQNQFKALSKEYAQLEPVATCYETYLDAQNNLASLQEMLA- 59 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E+ +A+ E+ +K+I EL+ ++ + L+PKD DD+++ LE+RAGTGG EAA+F Sbjct: 60 -GDDQELATMAEDELEDAQKQIDELDEQLQWHLIPKDPDDERNIYLEVRAGTGGDEAAIF 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 GDL+RMY RYA + W++E++S+S + GGYKEI+A ISG V+S++KFESG HRVQRV Sbjct: 119 AGDLYRMYSRYAENQGWQLELISASHGEHGGYKEIIARISGNAVYSQLKFESGAHRVQRV 178 Query: 189 PATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 P TE+ GRVHTSA TVAV+PE E D+ I +D+RIDT R+SG+GGQHVN TDSA+RIT Sbjct: 179 PDTESQGRVHTSACTVAVMPEVEEIDDIQINTDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V E+SQH+NR +AM +L+ RL D E+ + E++ RK +GSGDRSERI Sbjct: 239 HIPTGVVVECQDERSQHKNRAKAMSLLKTRLLDAEQSKQKKEQAQTRKSLVGSGDRSERI 298 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RTYN+ QGR+TDHRINLT+Y+L V++G + ++ PL + A+++ Sbjct: 299 RTYNYPQGRLTDHRINLTIYQLGDVMEGNLALVVEPLKREYHAELLAELG 348 >gi|325294472|ref|YP_004280986.1| peptide chain release factor 1 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064920|gb|ADY72927.1| Peptide chain release factor 1 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 361 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 182/354 (51%), Positives = 254/354 (71%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + +F EIE + + + + L +E+ + PI Y + KQ ++ Sbjct: 7 ERLDRIVEKFKEIEESLGKPEIIADQKKFQALAKEHKELQPIYETYMEYKKTKQGIEEAI 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I N D E+ +LA+ E +E+ + +LE E+ LL+PKD +D+K+ ILEIRAGTGG Sbjct: 67 EIIESANED-ELIELAKEEKKELEERLEQLEAELKKLLIPKDPNDEKNVILEIRAGTGGE 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA + WKVE+LS ++ GG KE++ATISG+G +SR+K+ESGVH Sbjct: 126 EAALFAQDLFRMYTRYAEKKGWKVEILSLNETGLGGIKEVIATISGKGAYSRLKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTSAATVA+LPEA E+D+ I +D++IDT R+SG+GGQHVNTTDSA Sbjct: 186 RVQRIPVTESGGRIHTSAATVAILPEAEEVDIHIDEKDLKIDTYRSSGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V S+E+SQ QNR++AMK+LRARL ++ ++ + + R+ QIGSGDR Sbjct: 246 VRITHIPTGIVVTCSNERSQIQNRIKAMKILRARLKELYERQQKEQLDSARRSQIGSGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYNF + R+TDHRI LTLY LE L G +D++I+ L A QA+ I + + Sbjct: 306 SEKIRTYNFPENRVTDHRIKLTLYNLEEFLDGELDEMIDALTAAEQAEKIEALA 359 >gi|116513791|ref|YP_812697.1| peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|313123397|ref|YP_004033656.1| peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|122275439|sp|Q04BB3|RF1_LACDB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116093106|gb|ABJ58259.1| bacterial peptide chain release factor 1 (bRF-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|312279960|gb|ADQ60679.1| Peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|325125449|gb|ADY84779.1| Peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus 2038] gi|325684404|gb|EGD26572.1| peptide chain release factor RF1 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 361 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L+ R+ EI+ M++ + Y+++T+E A + ++ K + K+E Sbjct: 7 QLESLEVRYEEIQEMMADPEVIADTKRYMEITKEEADMREVVQKFRKFKADKEEIAGNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D SD E+ ++A++E +E EI +LE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIAD-GSDPELVEMAKMENSELEDEISQLEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + W V ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAENQGWNVSIVDSEQTEVGGYKRVAIMITGNKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE++GRVHTS ATVAV+PE ++D+D+ ++IR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNRDKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D++I+ L +Q K + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEVIDALTVYYQTKQLEELAE 359 >gi|260911915|ref|ZP_05918480.1| peptide chain release factor RF1 [Prevotella sp. oral taxon 472 str. F0295] gi|260633938|gb|EEX52063.1| peptide chain release factor RF1 [Prevotella sp. oral taxon 472 str. F0295] Length = 370 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 145/370 (39%), Positives = 222/370 (60%), Gaps = 17/370 (4%) Query: 3 FLSHK----QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQK 55 + ++ L++R+ E+ +++ + Y+KLT EY + I++ Y Sbjct: 1 MIEQNSILAKLDGLESRYEEVSTLITDPAVIADQERYVKLTREYKDLGDIMNARKRYVAC 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + ++ + +D+E++D+A+ E+ E E +LE EI LL+PKD +D K+ +E Sbjct: 61 LNSIAEAKDILA-NETDAEMKDMAREELSTNEAERPKLEEEIKLLLVPKDPEDAKNVQME 119 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAGTGG EAALF GDLF MY+RY + W + V +SS+ GG+KEI +SG V+ Sbjct: 120 IRAGTGGDEAALFAGDLFGMYKRYCDSKGWNLSVTASSEGAVGGFKEIDFAVSGDNVYGI 179 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +K+ESGVHRVQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ Sbjct: 180 LKYESGVHRVQRVPATETQGRMHTSAATVAVLPEADKFEVNINEGDIKWDTFRSSGAGGQ 239 Query: 236 HVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 +VN +S VR+ + ++ + + Q +N+ RA+ LR +YD E ++ Sbjct: 240 NVNKVESGVRLRYPWKNPNTGETEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYV 299 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 ++ + RK + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I +I+ L A Sbjct: 300 DDIANRRKSLVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFIGGDIQAMIDALSVA 359 Query: 347 HQAKMIGSAS 356 + + A Sbjct: 360 ENTERMKEAE 369 >gi|146318502|ref|YP_001198214.1| peptide chain release factor 1 [Streptococcus suis 05ZYH33] gi|146320693|ref|YP_001200404.1| peptide chain release factor 1 [Streptococcus suis 98HAH33] gi|145689308|gb|ABP89814.1| Protein chain release factor A [Streptococcus suis 05ZYH33] gi|145691499|gb|ABP92004.1| Protein chain release factor A [Streptococcus suis 98HAH33] gi|292558283|gb|ADE31284.1| Peptide chain release factor 1 [Streptococcus suis GZ1] Length = 364 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 152/359 (42%), Positives = 233/359 (64%), Gaps = 4/359 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 + + Q+ +++R+ E+ +S+ V +++L++E A ++ Y Q Sbjct: 5 LMNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEATTRDTVTAYREYKTVLQN 64 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D +I + + D+++ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 65 IVDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILLLPKDPNDDKNIILEIRG 124 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+ Sbjct: 125 AAGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKY 184 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 185 ESGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVN 244 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK I Sbjct: 245 KVATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTI 304 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 305 GTGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVVDALVLYDQTQKLEELN 363 >gi|325479514|gb|EGC82610.1| peptide chain release factor 1 [Anaerococcus prevotii ACS-065-V-Col13] Length = 358 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 229/355 (64%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLH 63 + I +K + ++E +M + + KLT+ EY ++ PI+ K + + ++ Sbjct: 3 ENIEHIKENYKDLEKKMIDPEVLSDIAKLTKITREYNSLKPIVEKYDQIKEAEDTIEENK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + D ++ ++ + E+ EK + E E+ LL+PKD +D + I+EIR G GG Sbjct: 63 ELINEA-DDQDMVEMLKEEIKENEKLLDEYNEEMKILLIPKDPNDSRDVIIEIRPGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDL+RMY YA +K E + S GG K+ I G G +SR K+ESGVH Sbjct: 122 EAGLFAGDLYRMYHMYADKEGYKTEDVEVSSQGVGGIKDATFMIRGEGAYSRFKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAVLPE E+DV + DIR D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVLPEVDELDVHVDPNDIRTDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V+ EKSQ +N+ +AM++L AR+Y++E ++ E + NRK Q+G+GDR Sbjct: 242 VRLTHIPTGIVVSMQDEKSQIKNKEKAMRILLARIYELEEEKRNKEIADNRKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF QGRITDHRIN T+Y+L+ L G I ++I+ L+ Q + + E Sbjct: 302 SERIRTYNFPQGRITDHRINKTIYQLDDFLNGNIGEMIDSLIEEDQTRKLEKVGE 356 >gi|94986447|ref|YP_594380.1| peptide chain release factor 1 [Lawsonia intracellularis PHE/MN1-00] gi|119361555|sp|Q1MSG7|RF1_LAWIP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|94730696|emb|CAJ54058.1| Protein chain release factor A [Lawsonia intracellularis PHE/MN1-00] Length = 359 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 179/350 (51%), Positives = 250/350 (71%), Gaps = 6/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +L+ +F EIE +++ + Y KLT+ ++ + PI++ + + +Q+ + Sbjct: 4 KLENLEQKFIEIECSLAQPNIFNDQEQYRKLTKTHSDLKPIVTTFQQFKKLQQQLSENKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D D +I+++A E+ +E E+ LE E+ LLLPKD D+K+ +LEIRAGTGG E Sbjct: 64 LISDI--DPDIQEMALEEIKKLELELTHLEYELKILLLPKDPLDEKNILLEIRAGTGGEE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF DLFRMY RYA WKVE++S SD+D GG+KEI+A I G V+SR+KFESG HR Sbjct: 122 AALFAADLFRMYCRYAEKMHWKVEIMSQSDSDTGGFKEIIALIQGDNVYSRLKFESGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTSAATVAVLPEA ++D++I E++R D R+SG GGQ VNTTDSAV Sbjct: 182 VQRVPTTESQGRIHTSAATVAVLPEAEDVDIEIRPEELRFDVFRSSGPGGQSVNTTDSAV 241 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V EKSQH+N+ +A+KVL +RL +++++ E++ R+ +GSGDRS Sbjct: 242 RVTHIPTGIVVTCQDEKSQHKNKAKALKVLSSRLLQIKQEQQEIEQADARRALVGSGDRS 301 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 ERIRTYNF QGR+TDHRINLTLY L V++G I + I+ L T Q + + Sbjct: 302 ERIRTYNFPQGRVTDHRINLTLYSLIKVMEGEIQEFIDALSTHAQTEALK 351 >gi|50914205|ref|YP_060177.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS10394] gi|61214586|sp|Q5XC69|RF1_STRP6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|50903279|gb|AAT86994.1| Bacterial Peptide Chain Release Factor 1 [Streptococcus pyogenes MGAS10394] Length = 359 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 160/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G ++++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMNEVIDALVMYDQTKKLESLN 358 >gi|312884085|ref|ZP_07743798.1| peptide chain release factor 1 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368255|gb|EFP95794.1| peptide chain release factor 1 [Vibrio caribbenthicus ATCC BAA-2122] Length = 362 Score = 268 bits (686), Expect = 6e-70, Method: Composition-based stats. Identities = 166/362 (45%), Positives = 241/362 (66%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + + Q ++ Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPEIIGDQDKFRSLSKEYSQLEEVTKCFQAFQQAQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D E+R++AQ E+ ++ I L E+ LLLPKD +DD++C LEIR Sbjct: 61 DL--TAAEEMAKEEDEEMREMAQEEIAQSKQAIENLSEELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY ++A + W++EV+SS++ + GGYKE++A +SG G + MK Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKFAEKKGWRIEVMSSNEAEHGGYKEMIAKVSGEGAYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA++ E E + +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAIMAEIPEAEIPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E + A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIIQAEEAKRAAEESDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRS+RIRTYN+ QGR++DHRINLTLY+L V++G + +I+P+L HQA + + Sbjct: 299 LLGSGDRSDRIRTYNYPQGRVSDHRINLTLYRLNEVMEGDVSSLIDPVLQEHQADQLAAL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|299769517|ref|YP_003731543.1| peptide chain release factor 1 [Acinetobacter sp. DR1] gi|298699605|gb|ADI90170.1| peptide chain release factor 1 [Acinetobacter sp. DR1] Length = 362 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 244/362 (67%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + KL+ E++ +S I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADVEVISDNKRFRKLSREHSDLSEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKDLLVELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQNWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|282879521|ref|ZP_06288252.1| peptide chain release factor 1 [Prevotella timonensis CRIS 5C-B1] gi|281306469|gb|EFA98498.1| peptide chain release factor 1 [Prevotella timonensis CRIS 5C-B1] Length = 370 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 219/361 (60%), Gaps = 13/361 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ RF E+ +++ + Y+KLT+EY + I+ Y ++ Sbjct: 10 KLEGLEARFEEVSTLITDPDVIADQPRYVKLTKEYKDLGDIMDIRKRYIACLNAIRESKD 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D++++++A+ E+ A E +LE EI L+PKD +D K+ +EIRAGTGG E Sbjct: 70 ILA-NETDADMKEMAREELQANEDMQPQLEEEIKLALVPKDPEDAKNVQMEIRAGTGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLF MY+ Y + W + V S ++ GGYKEI +SG V+ +K+ESGVHR Sbjct: 129 AALFAGDLFNMYKHYCDSKGWTLSVTSVNEGSVGGYKEIDFAVSGDNVYGTLKYESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S V Sbjct: 189 VQRVPATETQGRMHTSAATVAVLPEADQFEVNINEGDIKWDTFRSSGAGGQNVNKVESGV 248 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 249 RLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYIDDIANRRKS 308 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I +I+ L A A+ + + Sbjct: 309 LVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFIGGDIQGVIDALTVAENAEKLKDS 368 Query: 356 S 356 Sbjct: 369 E 369 >gi|116618873|ref|YP_819244.1| peptide chain release factor 1 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122270927|sp|Q03VA1|RF1_LEUMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116097720|gb|ABJ62871.1| bacterial peptide chain release factor 1 (bRF-1) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 356 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 147/359 (40%), Positives = 227/359 (63%), Gaps = 9/359 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 Q + + + + E+ ++++ ++ Y+KL++E I + + Y Q Q+ Sbjct: 1 MDPIFQSLQTVIDHYDELNEQLADPEVMNNGQHYMKLSKEAGEIRQTVEVYTRYKQVIQD 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 QD ++G D+E+ LA+ ++ A++ E +LE ++ L+LPKD +DDK+ I+EIR Sbjct: 61 IQDAEELLG----DAEMAPLAKEDLSALKPEKEQLEEQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA + W + ++ S + GGYKE+ I+G V+S++KF Sbjct: 117 AAGGDESSLFAADLLDMYRRYAERQNWSMSIIDESTTEVGGYKEVAVMITGDNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVPATE GRVHTS ATV V+PE EID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPATETQGRVHTSTATVGVMPEFEEIDFELNESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTGIMV E++Q +NR +A K+L +R+YD ++ +E +A RK + Sbjct: 237 KVSTAVRLIHKPTGIMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNESEYAAQRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G + ++I+ L+ A Q + + Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELGEVIDALVIADQTAKLAELN 355 >gi|104773785|ref|YP_618765.1| peptide chain release factor 1 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|119361552|sp|Q1GAX5|RF1_LACDA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|103422866|emb|CAI97528.1| Peptide chain release factor 1 (RF-1) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 361 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L+ R+ EI+ M++ + Y+++T+E A + ++ K + K+E Sbjct: 7 QLESLEVRYEEIQEMMADPEVIADTKRYMEITKEEADMREVVQKFRKFKADKEEIAGNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D SD E+ ++A++E +E EI +LE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIAD-GSDPELVEMAKMENSELEDEISQLEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + W V ++ S + GGYK I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAENQGWNVSIVDSEQTEVGGYKRAAIMITGNKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE++GRVHTS ATVAV+PE ++D+D+ ++IR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESAGRVHTSTATVAVMPEYEQVDIDLDPKEIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNRAKAMEILKSRVYDYYESQNRDKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D++I+ L +Q K + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEVIDALTVYYQTKQLEELAE 359 >gi|66769665|ref|YP_244427.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris str. 8004] gi|81304380|sp|Q4URB6|RF1_XANC8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|66574997|gb|AAY50407.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris str. 8004] Length = 361 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 170/363 (46%), Positives = 247/363 (68%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPEVVSNNDKFRSLSRELSQLEPVALAMQEEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+LA + + EL+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLSAAEAM----RNDPEMRELAEEEILAAQARLDELDAQLALLLVPRDPRDEGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L + ER + A ++ RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLVEAERSKAAAAKAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 SE Sbjct: 357 LSE 359 >gi|90422036|ref|YP_530406.1| peptide chain release factor 1 [Rhodopseudomonas palustris BisB18] gi|119361591|sp|Q21BZ9|RF1_RHOPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|90104050|gb|ABD86087.1| bacterial peptide chain release factor 1 (bRF-1) [Rhodopseudomonas palustris BisB18] Length = 361 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 190/358 (53%), Positives = 255/358 (71%), Gaps = 2/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L ++ L A +E ++ D Y+KL E A ++P+I + Y Q E Sbjct: 1 MSLLPETKLDVLLAHHASLENQLQSQVGADTYVKLMRELAELNPLIEAVKAYRQVGAERG 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ ++ D +D+E+R +A+ E A+E + EL +I LLPKD DD++ +LEIRAGT Sbjct: 61 EIDALLADAATDAEMRAMAEAEHAALEAQEAELAQQIRVALLPKDAMDDRNVMLEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LF GDLFRMYE++A L+ W VEV+S+S+ GGYKEI+A + GRG F+++KFES Sbjct: 121 GGDEASLFAGDLFRMYEKFAVLQGWSVEVVSASEGTMGGYKEIIAEVKGRGAFAKLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAATVAVLPE E+DVDI +D+RI+TMRA G+GGQHVN T Sbjct: 181 GVHRVQRVPDTETQGRIHTSAATVAVLPEVEEVDVDIKPDDLRIETMRAQGAGGQHVNKT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SA+RITHIPTG+ V +SQH+NR AM +LR+R+YD E++R+ + RSA RK ++GS Sbjct: 241 ESAIRITHIPTGLQVMMQDSRSQHKNRASAMNILRSRIYDAEQQRIDSVRSAERKEKVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTLYKL V+ G + ++I+ L T HQA + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLPQVIAGEALGELIDALTTEHQAAQLAAQG 358 >gi|291288202|ref|YP_003505018.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM 12809] gi|290885362|gb|ADD69062.1| peptide chain release factor 1 [Denitrovibrio acetiphilus DSM 12809] Length = 356 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 244/354 (68%), Gaps = 6/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++ ++ E+ ++ + + + K +E+A + P++ + Y +K+ + H Sbjct: 3 DKLDEVRKKYYELTDKLVDPELMKDNMAFQKTAKEHAELKPVVERYEEYLAEKEAVDEAH 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++I + D ++ +LA++E+ + + ELE+E+ LL KD DDK+ LEIRAGTGG Sbjct: 63 SIIK-TSDDKDLVELAEMELEEKKGVLDELEDELKKSLLTKDPYDDKNIFLEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL +MY +YA + WKVEV+ ++ GGYKE+VA + G G +S++KFE+G H Sbjct: 122 EASLFAGDLLKMYTKYAEMNGWKVEVVDFNETGVGGYKEVVALVKGHGAYSKLKFEAGGH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSA TVAVLPEA ++DV I +D+RID RASG+GGQHVNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSACTVAVLPEAEDVDVHIEQKDLRIDVFRASGAGGQHVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTG++V E+SQ +NR +AMK+L++++ + E ++ + +A+RKLQ+GSGDR Sbjct: 242 VRMTHIPTGVVVSCQDERSQIKNREKAMKLLKSKILEAEIQKKQSAEAASRKLQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI L+ L G ++D+I+ + QA+ + + Sbjct: 302 SERIRTYNFPQNRVTDHRIK-ESANLDRFLLGEMEDMIDATIAFDQAERLQESG 354 >gi|172058704|ref|YP_001815164.1| peptide chain release factor 1 [Exiguobacterium sibiricum 255-15] gi|229576657|sp|B1YEH9|RF1_EXIS2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|171991225|gb|ACB62147.1| peptide chain release factor 1 [Exiguobacterium sibiricum 255-15] Length = 352 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 162/356 (45%), Positives = 249/356 (69%), Gaps = 8/356 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L++R+ ++ +++ + ++++E + ++P + +Y K + Q+ Sbjct: 1 MLDRLSALEDRYEKLNDLLADPAIIKDTNQLREVSKEQSQLAPTVEVYRVYRDKMEAYQE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +D E+RDLA+ EV +E EI++LE ++ LLLPKD +DDK+ I+EIR G Sbjct: 61 ARHML----TDPEMRDLAKEEVAVLEPEIKDLETKLKALLLPKDPNDDKNVIVEIRGAAG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDLF+MY ++A + WK+E++ +S + GGYKEI+ + G G +S++K+E+G Sbjct: 117 GDEAALFAGDLFKMYSKFAEKQNWKIEIIDASYTELGGYKEIIFIVKGSGAYSKLKYENG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP+TE+ GR+HTS ATVAVLPEA +++V+I +D+R+DT +SG GGQ VNTT Sbjct: 177 AHRVQRVPSTESGGRIHTSTATVAVLPEAEDVEVEIHDKDVRVDTFTSSGPGGQSVNTTQ 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+ EKSQ +N+ +AMKVLRAR+YD ++ E RK +G+G Sbjct: 237 SAVRVTHVPTGIVASCQDEKSQIKNKEKAMKVLRARVYDKIQREQQAEYDEKRKSAVGTG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF+Q R+TDHRI LT+ KL+ +LQG +D++I+ L+ +QA+ +A+ Sbjct: 297 DRSERIRTYNFAQNRVTDHRIGLTIQKLDRILQGEMDEVIDTLVMEYQARASEAAN 352 >gi|212550858|ref|YP_002309175.1| peptide chain release factor 1 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549096|dbj|BAG83764.1| peptide chain release factor 1 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 359 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L RF EI +S + ++KL +EY + I Y Q D Sbjct: 6 EKLDILIIRFEEIGKLISNPDSITDMKRFVKLNKEYRELEKISLIRDQYKQTLINIIDAQ 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ + SD +R++A+ E+ + +LE +I LL+P D D K+ I+EIR+GTGG Sbjct: 66 TIL-EKESDKILREIAKEELEESTSLLNQLEKKIKLLLIPIDPQDGKNAIVEIRSGTGGD 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL++MY +Y + WK+ V SSS+ GG+KEI+ T++G V+S +K+ESGVH Sbjct: 125 EASLFAGDLYKMYSKYCESKGWKIAVTSSSEGTIGGFKEIIFTVNGENVYSTLKYESGVH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTSAATVAV PEA ++D++I DIR DT +SG GGQ VNTT SA Sbjct: 185 RVQRVPITETQGRIHTSAATVAVFPEAKDVDIEIKESDIRTDTFCSSGPGGQSVNTTYSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +R+THIPTGI+V E+SQ +N+ +AM LR+R+Y++E ++ +E + RK + +GDR Sbjct: 245 IRLTHIPTGIVVQCQDERSQLKNKEKAMTELRSRIYNIEYQKQIDETALKRKTMVSTGDR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 S +IRTYN+ QGR+TDHRIN T Y L L+G I + IN L+ A ++ + + Sbjct: 305 SAKIRTYNYPQGRVTDHRINYTTYNLLTFLEGNIQEFINQLIIAENSEKLKDSE 358 >gi|160878572|ref|YP_001557540.1| peptide chain release factor 1 [Clostridium phytofermentans ISDg] gi|189039966|sp|A9KHD4|RF1_CLOPH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160427238|gb|ABX40801.1| peptide chain release factor 1 [Clostridium phytofermentans ISDg] Length = 358 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 246/355 (69%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ DL RF EI+ ++E + + KL +E + I+ K Y Q K+ ++ Sbjct: 3 DKLEDLLIRFQEIQNELNEPTVTNDQARFRKLMKEQNDLGEIVDKYLEYKQTKKNIEE-S 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D SD E+R+LA+ E+ + + +E ++ LLLPKD +D K+ I+EIR G GG Sbjct: 62 LELLDEESDEEMRELAKEELSTSKANLVVIEEQLKILLLPKDPNDSKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +LFRMY +YA +WK+++++ ++N GG+KE++ I+G+G +S++K+ESGVH Sbjct: 122 EAALFAAELFRMYSKYAETMRWKIDMMNLNENGIGGFKEVIFMINGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+ GR+HTS TVA++PEA E+DV++ + D R D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRIPVTESGGRIHTSTVTVAIMPEAEEVDVELNMNDCRFDVFRSSGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ EKSQ +NR +A+KVLRARLY++E ++ + +A RK Q+G+GDR Sbjct: 242 VRLTHMPTGIVISCQDEKSQLKNRDKALKVLRARLYELELEKAHDAEAAARKSQVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR TDHRI LT ++L+ ++ G + ++I+ L A QA + + + Sbjct: 302 SEKIRTYNFPQGRCTDHRIKLTSHRLDDIMNGDLQEVIDSLTAADQAAKLSNMQD 356 >gi|315125019|ref|YP_004067023.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315018741|gb|ADT66834.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 355 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|270291033|ref|ZP_06197256.1| peptide chain release factor 1 [Pediococcus acidilactici 7_4] gi|304385309|ref|ZP_07367654.1| peptide chain release factor RF1 [Pediococcus acidilactici DSM 20284] gi|270280429|gb|EFA26264.1| peptide chain release factor 1 [Pediococcus acidilactici 7_4] gi|304328516|gb|EFL95737.1| peptide chain release factor RF1 [Pediococcus acidilactici DSM 20284] Length = 359 Score = 268 bits (686), Expect = 7e-70, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +R+ E+ +++ + Y +L++E I + K Y + Sbjct: 1 MDIMDKVQAVADRYDELSELLADPEVLADSQRYQELSKEEGEIRETVEKYREYRKVVDSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + D E+ L + E+ + + +LE EI L+LPKD +DDK+ I+EI Sbjct: 61 AENEEL-QREKLDPEMDSLVKAELADLRDQKEKLEEEIKVLMLPKDPNDDKNIIMEIHGA 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LF DL+ MY RYA + WKV+++ + D GG+KEIV ISG V+S++K+E Sbjct: 120 AGGDEASLFAADLYNMYTRYAESQGWKVQIVDENATDVGGFKEIVLMISGDKVYSKLKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +G HRVQRVP TE++GRVHTS ATV V+PEA ++D++I +DIR D R+SG+GGQH+N Sbjct: 180 NGAHRVQRVPVTESAGRVHTSTATVGVMPEAEDVDIEIDPKDIRTDVYRSSGAGGQHINK 239 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH+PTGI+V E+SQ QNR +AM++L+AR+YD + + + + RK +G Sbjct: 240 TSSAVRMTHLPTGIVVAMQDERSQQQNREKAMRILKARVYDYYQSQEEDAYNEERKNAVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GDRSERIRTYNF Q R+TDHRI LTL KL+ V+ G +++II L+ QAK + + Sbjct: 300 TGDRSERIRTYNFPQNRVTDHRIGLTLNKLDRVMNGELNEIIEALILDDQAKKMEAL 356 >gi|319788960|ref|YP_004090275.1| peptide chain release factor 1 [Ruminococcus albus 7] gi|315450827|gb|ADU24389.1| peptide chain release factor 1 [Ruminococcus albus 7] Length = 359 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 165/356 (46%), Positives = 250/356 (70%), Gaps = 5/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L+++F EI R+ + V+ Y +L EY + P++ + YD+ K E + Sbjct: 3 EKLRALEDKFNEINERLMQPEVVNDSKLYTELMIEYKNLEPVVEALREYDKAKAEFDEAV 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D + D++++D+ Q + + + LE E+ LLLPKD +DD++ I+EIR G GG Sbjct: 63 EMSSDSSLDADMKDMVQEQYAESKAAMARLEEELKILLLPKDPNDDRNVIIEIRGGAGGE 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF L+RMY YAA + W++EV+S+++ + GGYKEI T+SG+G +SR+K+ESGVH Sbjct: 123 EAALFANSLYRMYSMYAAQKNWQIEVMSANETELGGYKEITFTVSGQGAYSRLKYESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE+ GRVHTS TVAVLPE +++++I E +I+++ R+SG+GGQH+N T S Sbjct: 183 RVQRVPETESQGRVHTSTVTVAVLPEVDDVELEINEEKEIKMEVFRSSGAGGQHINKTSS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ HIPTG +V +E+SQ QNR +A+K+L+A+L D + + +E ++NR+ Q+G+GD Sbjct: 243 AVRLIHIPTGTVVECQNERSQFQNREKALKMLKAKLLDEKVRAQEDEIASNRRSQVGTGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYNF + RI+DHRI LTLYKLE +L G +D++I+ L TA QA + + E Sbjct: 303 RSEKIRTYNFPESRISDHRIKLTLYKLEQILNGNLDEVIDALATADQAAKLAAQEE 358 >gi|86152633|ref|ZP_01070838.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843518|gb|EAQ60728.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 355 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K+ Y + ++ Sbjct: 5 KLDPFLRRFEELNSLLSSSDIINDISKMTTLSKEQKNLEPIVLKVKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|114797902|ref|YP_759355.1| peptide chain release factor 1 [Hyphomonas neptunium ATCC 15444] gi|119361550|sp|Q0C4I8|RF1_HYPNA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|114738076|gb|ABI76201.1| peptide chain release factor 1 [Hyphomonas neptunium ATCC 15444] Length = 352 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 180/350 (51%), Positives = 246/350 (70%), Gaps = 3/350 (0%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 ++ + +R+ E+E RM + + + I L++E+A + P++ K ++ + +I Sbjct: 2 RLQQVIDRYEEVEARMGATSNTNEIIALSKEHAELRPVVEKARALMTVRKGLSEAEAMIA 61 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E+ +LA++E+ + + + LE E+ LLLPKD DD +LE+RAGTGG EAAL Sbjct: 62 --SGDREMAELAEMEIDDLRERLPGLEQEMQLLLLPKDVDDKADIVLEVRAGTGGDEAAL 119 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F GDLFRMY R+A + W VE++ + D GGYKEI+A +SG GVF RMK+ESGVHRVQR Sbjct: 120 FAGDLFRMYTRFAQIMGWSVEIVDVAPGDAGGYKEIIANVSGDGVFGRMKWESGVHRVQR 179 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VPATE GR+HTSAATVAVLP I++++ +DIRIDTMR+SG+GGQHVNTTDSAVRIT Sbjct: 180 VPATETQGRIHTSAATVAVLPAPENIEIEVRADDIRIDTMRSSGAGGQHVNTTDSAVRIT 239 Query: 248 HIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 H+PTGIMVTSSEKSQH NR +AM L+ RLY+ ER RS R QIGSGDRS+++R Sbjct: 240 HLPTGIMVTSSEKSQHVNREKAMDQLKIRLYERERAEKDAARSEARASQIGSGDRSQKVR 299 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 TYN+ + R+TDHRI LTLY L+ ++ G + D+I L+T Q++ + S Sbjct: 300 TYNYPENRLTDHRIGLTLYSLDRIITGDKLGDVIEALITEDQSRRLASLE 349 >gi|254302818|ref|ZP_04970176.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323010|gb|EDK88260.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 357 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 243/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVTRYDELNKMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 DSE++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 ESFK-TEKDSEMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + GG KEI TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ E Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEE 357 >gi|258648524|ref|ZP_05735993.1| peptide chain release factor 1 [Prevotella tannerae ATCC 51259] gi|260851292|gb|EEX71161.1| peptide chain release factor 1 [Prevotella tannerae ATCC 51259] Length = 371 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 153/362 (42%), Positives = 230/362 (63%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ L++RF E+ +++ + Y++LT+EY + ++ Y + Q+ Sbjct: 10 EKLDGLRSRFEEVSTLITDPSVIADQTRYVRLTKEYKELEDLMQARKRYAELLSNLQESK 69 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ +D+E+++LA+ EV A E EI E +I +L+PKD +D K+ ILEIRAGTGG Sbjct: 70 NLL-LTETDAELKELAREEVAACEAEIPTCEEQIKLMLVPKDPEDGKNAILEIRAGTGGD 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY ++ + WK EV S+++ GG+KE+VA+++G V+ +K+ESGVH Sbjct: 129 EAALFAGDLFRMYAKFCESKGWKFEVSSANEGAVGGFKEVVASVTGADVYGTLKYESGVH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA DV+I +IR +T R+SG+GGQ+VN +S Sbjct: 189 RVQRVPATETQGRVHTSAATVAVLPEAEAFDVEIHEGEIRWETFRSSGAGGQNVNKVESG 248 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 249 VRLRYDWKNPNTGETEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYVDDIANRRK 308 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D I+ L+ A A+ + Sbjct: 309 TLVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLPAFVDGDIQDCIDQLMVAENAERMKE 368 Query: 355 AS 356 A Sbjct: 369 AE 370 >gi|91792280|ref|YP_561931.1| peptide chain release factor 1 [Shewanella denitrificans OS217] gi|119361603|sp|Q12QR8|RF1_SHEDO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|91714282|gb|ABE54208.1| bacterial peptide chain release factor 1 (bRF-1) [Shewanella denitrificans OS217] Length = 361 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 157/355 (44%), Positives = 240/355 (67%), Gaps = 7/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+ + ++ + + L++EY+ + ++ + Q + + Sbjct: 8 KLEGLLERNEEVLAMLGDATVISDQERFRALSKEYSQLEDVVKSFKAFQQAQLDLASAKE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D+E+R++AQ E+ A +K I +LE+E+ LLLPKD +DD + LEIRAG GG E Sbjct: 68 MLQE--DDAEMREMAQEEMKAAKKVIEQLEDELQILLLPKDPNDDTNAFLEIRAGAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA+F GDLFRMY R+ KW+VEV++ ++ D GG+KEI+ +SG GV+ ++K+ESG HR Sbjct: 126 AAIFAGDLFRMYSRFCEANKWQVEVMNVNEADLGGFKEIIVKVSGEGVYGKLKYESGGHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GRVHTSA TV VL E E + D+++DT RASG+GGQHVN TDSA Sbjct: 186 VQRVPETESQGRVHTSACTVVVLHEVPEAEAISINPADLKVDTFRASGAGGQHVNKTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIP+GI+V ++SQH+NR +AM VL AR+ +E ++ + R+ + SGDR Sbjct: 246 IRITHIPSGIIVECQDQRSQHKNRAQAMSVLAARIQAIEDEKRRSAEETTRRSLVASGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYN+ QGR++DHRINLTLY+L +++G ++ ++ P++ HQA ++ + ++ Sbjct: 306 SERIRTYNYPQGRVSDHRINLTLYRLNEIMEGDLNALLEPIMLEHQADLLAALAD 360 >gi|218960517|ref|YP_001740292.1| peptide chain release factor RF-1 [Candidatus Cloacamonas acidaminovorans] gi|167729174|emb|CAO80085.1| peptide chain release factor RF-1 [Candidatus Cloacamonas acidaminovorans] Length = 355 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 236/353 (66%), Gaps = 5/353 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEE 59 L +++ L+N E++ ++S+ ++ K + + I + Y K+ Sbjct: 1 MLPQEKLQILENELKEMQEQISDPAVINDAQKYRDCLRRFKELREINAAWKHYQTLKKHI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++++ + +D E+ DL + E ++++++ + E ++ LL+P D +D K+ I+EIRAG Sbjct: 61 EEVNAL-EKTENDPEMLDLIKDEERSLQQQLEQTELKLKDLLIPADPNDAKNAIVEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DLFRMY YA ++ WK+EV+S + + GGYKEI+ +SG+ V+S M+FE Sbjct: 120 TGGEEAALFAADLFRMYSYYAEMKGWKLEVISMNQTELGGYKEIIFQLSGKDVYSYMRFE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQR+P TE+SGR+HTSA TVAVLPEA +ID+DI D+RID R++G GGQ VNT Sbjct: 180 SGVHRVQRIPVTESSGRIHTSAVTVAVLPEAEDIDIDIQESDLRIDVYRSTGHGGQSVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V EKSQ +N+ +A+KVLR+RL D E R E + RK Q+ Sbjct: 240 TDSAVRITHLPTGIVVTCQDEKSQIKNKAKALKVLRSRLLDEEISRQEQEIAKARKAQVS 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +GDRS +IRTYNF Q R+TDHRINLT Y L+ L G I++ I L A + + Sbjct: 300 TGDRSAKIRTYNFPQSRVTDHRINLTSYNLDSFLAGNIEEFIQALRLAWRNEK 352 >gi|57238625|ref|YP_179756.1| peptide chain release factor 1 [Campylobacter jejuni RM1221] gi|73621534|sp|Q5HSH9|RF1_CAMJR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|57167429|gb|AAW36208.1| peptide chain release factor 1 [Campylobacter jejuni RM1221] gi|315059063|gb|ADT73392.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni S3] Length = 355 Score = 268 bits (685), Expect = 8e-70, Method: Composition-based stats. Identities = 173/354 (48%), Positives = 242/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAG GG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGAGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|320538185|ref|ZP_08038080.1| peptide chain release factor 1 [Treponema phagedenis F0421] gi|320145002|gb|EFW36723.1| peptide chain release factor 1 [Treponema phagedenis F0421] Length = 371 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 173/357 (48%), Positives = 257/357 (71%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +L+N++ ++EL + + V Y + ++ +S ++ + Y Q +++ Q Sbjct: 15 MMKDRLENLRNQWKQVELEVQDPDLVKNVARYKDVMRQHGYLSKLMDEYDFYLQTEKQLQ 74 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + H ++ + SD E++++A+ E+ A+EK++ + E ++ LL+P D ++K+ I+EIR GT Sbjct: 75 EAHALMQEE-SDHELKEMAREEMHALEKQLEQSEADLKMLLIPPDPMEEKNIIMEIRGGT 133 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLF+MY YA + W E++ +++ + GG+KEIV +ISG+ V+ +++ES Sbjct: 134 GGDEAALFAADLFKMYTHYAESKNWTYEIMDANETELGGFKEIVFSISGKYVYGSLRYES 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE SGR+HTSA TVAVLPEA E ++ I ED+R+D MRA G GGQ VNTT Sbjct: 194 GVHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIVIKPEDLRVDVMRAGGPGGQSVNTT 253 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTG++V EKSQ +N+ +A++VLR+RLYD+E + ER+ NRK Q+GS Sbjct: 254 DSAVRLTHIPTGMVVICQDEKSQIKNKAKALRVLRSRLYDLEESKKNQERAQNRKSQVGS 313 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q R+TDHRINLTLY+L+ VLQG +D+II PL A + +M+ A+ Sbjct: 314 GDRSERIRTYNFPQNRVTDHRINLTLYQLDAVLQGDLDEIIEPLCIAAREEMLNEAN 370 >gi|253751628|ref|YP_003024769.1| peptide chain release factor 1 [Streptococcus suis SC84] gi|253753530|ref|YP_003026671.1| peptide chain release factor 1 [Streptococcus suis P1/7] gi|253755645|ref|YP_003028785.1| peptide chain release factor 1 [Streptococcus suis BM407] gi|251815917|emb|CAZ51531.1| peptide chain release factor 1 [Streptococcus suis SC84] gi|251818109|emb|CAZ55903.1| peptide chain release factor 1 [Streptococcus suis BM407] gi|251819776|emb|CAR45680.1| peptide chain release factor 1 [Streptococcus suis P1/7] gi|319758066|gb|ADV70008.1| peptide chain release factor 1 [Streptococcus suis JS14] Length = 359 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 152/358 (42%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A ++ Y Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEATTRDTVTAYREYKTVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D+++ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVVDALVLYDQTQKLEELN 358 >gi|308071169|ref|YP_003872774.1| peptide chain release factor 1 [Paenibacillus polymyxa E681] gi|305860448|gb|ADM72236.1| Peptide chain release factor 1 (RF-1) [Paenibacillus polymyxa E681] Length = 355 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 241/354 (68%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + + KL ++E + + P + Y +E + Sbjct: 1 MLDRLQSLADRYDKLSELLCDPDVANDSKKLRDYSKEQSDLQPAYEAYTEYKNVVEELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T+ G+ D E+R++ ++E+ + REL+ +I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKTMQGEKLDD-EMREMVKMEIEELSVRKRELDEKIRILLLPKDPNDDKNVIIEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY RYA + W+VE++ ++ ND GG+KE++ I+GRG +S+MKFESG Sbjct: 120 GDEAALFAADLYRMYTRYADTQGWRVELMDANMNDLGGFKEVIFMINGRGAYSKMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TV+V+PEA E+D++I +DIR+DT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPTTESGGRIHTSTSTVSVMPEAEEVDIEISDKDIRVDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGIM KSQ+ N+ +A++VLRAR+ D+ R+ + + RK ++G+G Sbjct: 240 SAVRVTHMPTGIMATCQDGKSQNSNKEKALQVLRARISDMLRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF Q R+TDHRI LT++KL+ V+ G I++I++ L A QA ++ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTMHKLDQVMNGEIEEIVSALTIAEQADLMEQ 353 >gi|170742857|ref|YP_001771512.1| peptide chain release factor 1 [Methylobacterium sp. 4-46] gi|226739116|sp|B0UAV4|RF1_METS4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|168197131|gb|ACA19078.1| peptide chain release factor 1 [Methylobacterium sp. 4-46] Length = 359 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 184/359 (51%), Positives = 250/359 (69%), Gaps = 5/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M+ + ++ + R + +S +++++L+ E + + +++ I Y + E Sbjct: 1 MIAIPSDRLDAILARHDIVTATLSAGEADSESFVQLSRELSDLDDVVAAIRAYRAAEAEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + ++ + D E+R LA E +E + +LLPKD D+KS ILEIRAG Sbjct: 61 RGVEAMLQE--GDPEMRALAAEEKPEVEAARDAAAKALQIMLLPKDAADEKSAILEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDL RMY RYA L+ WK+EV+S S GGY+E+VA + GRGVF+R+KFE Sbjct: 119 TGGDEAALFAGDLLRMYARYADLKGWKIEVVSESPGTMGGYREVVAEVKGRGVFARLKFE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+D+ + D++IDTMRA G+GGQHVN Sbjct: 179 SGAHRVQRVPETETQGRIHTSAATVAVLPEAEEVDIHVNEADLKIDTMRAQGAGGQHVNK 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITHIP+GI+V E+SQH+NR RAM VLRARLY+ ER + R+A+R+ Q+G Sbjct: 239 TESAIRITHIPSGIVVFVQEERSQHKNRARAMAVLRARLYEQERSQKDAARAADRRAQVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHRINLTLYKLE VL G +D++++ L+T HQA ++ + Sbjct: 299 SGDRSERIRTYNFPQGRVTDHRINLTLYKLEEVLAGTALDELVDALVTEHQAALLAAEG 357 >gi|319936941|ref|ZP_08011351.1| peptide chain release factor 1 [Coprobacillus sp. 29_1] gi|319807877|gb|EFW04456.1| peptide chain release factor 1 [Coprobacillus sp. 29_1] Length = 358 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 145/357 (40%), Positives = 234/357 (65%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + R+ E+ + + + + ++E A++ Y + ++ Sbjct: 4 MIEKLETIARRYEELNEILMDPSIASDIHKMTEASKEQASLETAYQLYQEYKKVLSGIEE 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D EI+++A++E+ +E++ LE +++ L+PKD +D+K+ I+E+R G Sbjct: 64 AKELMKE--NDPEIKEMAELELSELEEKKPHLEEKLHLELIPKDPNDNKNVIVEVRGAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E +F GDL+RMY +YA + WKVEV+ + +++ GG+ + + G GV+S++KFESG Sbjct: 122 GDEGNIFAGDLYRMYVKYAESQGWKVEVMETQESEAGGFSLVSFMVKGEGVYSKLKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE GRVHTS ATV V+PEA E+DV+I D+RIDT RASG+GGQH+N TD Sbjct: 182 SHRVQRVPKTETQGRVHTSTATVLVMPEAEEVDVEINPGDLRIDTYRASGAGGQHINKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+ + +SQH N+ +AM+ LRAR+Y++ ++ + R+ +IGSG Sbjct: 242 SAVRITHLPTGIVASSQDGRSQHDNKDKAMRALRARVYEMVQREQEEALGSERRSKIGSG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSE+IRTYN+ Q R+TDHRI LT+ +L+ +++G +DD+I+ L+ Q + E Sbjct: 302 DRSEKIRTYNYPQNRVTDHRIGLTIQQLDRIMEGKLDDVIDALINEDQRLKLLGEEE 358 >gi|21230341|ref|NP_636258.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|188992877|ref|YP_001904887.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris str. B100] gi|24418637|sp|Q8PC68|RF1_XANCP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|229576663|sp|B0RUA5|RF1_XANCB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21111894|gb|AAM40182.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|167734637|emb|CAP52847.1| peptide chain release factor 1 [Xanthomonas campestris pv. campestris] Length = 361 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 170/363 (46%), Positives = 246/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPEVVSNNDKFRSLSRELSQLEPVALAMQEEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+LA + + EL+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLSAAEAM----RNDPEMRELAEEEILAAQARLDELDAQLALLLVPRDPRDEGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLVEAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 SE Sbjct: 357 LSE 359 >gi|237744127|ref|ZP_04574608.1| peptide chain release factor 1 [Fusobacterium sp. 7_1] gi|256027764|ref|ZP_05441598.1| peptide chain release factor 1 [Fusobacterium sp. D11] gi|289765720|ref|ZP_06525098.1| bacterial Peptide Chain Release Factor 1 [Fusobacterium sp. D11] gi|229431356|gb|EEO41568.1| peptide chain release factor 1 [Fusobacterium sp. 7_1] gi|289717275|gb|EFD81287.1| bacterial Peptide Chain Release Factor 1 [Fusobacterium sp. D11] Length = 357 Score = 268 bits (685), Expect = 9e-70, Method: Composition-based stats. Identities = 166/356 (46%), Positives = 243/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYDELNKMLVSPEILADSKKMIECNKALNEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D +++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 ESFK-TEKDPDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + GG KEI TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|313889382|ref|ZP_07823030.1| peptide chain release factor 1 [Streptococcus pseudoporcinus SPIN 20026] gi|313122214|gb|EFR45305.1| peptide chain release factor 1 [Streptococcus pseudoporcinus SPIN 20026] Length = 359 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ L++R+ E+ +S+ V +++L++E A+ ++ Y + Q Sbjct: 1 MNIYDQLQSLEDRYEELGELLSDPEVVSDTKRFMQLSKEEASTRDTVTAYRQYKEIIQSI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + DSEI ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 ADAEEMIKESGGDSEIEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLVMYQKFAESQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE +++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEIEDVEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI HIPT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHIPTNIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEIVDALIMYDQTQKLESLN 358 >gi|330813117|ref|YP_004357356.1| peptide chain release factor 1 [Candidatus Pelagibacter sp. IMCC9063] gi|327486212|gb|AEA80617.1| peptide chain release factor 1 [Candidatus Pelagibacter sp. IMCC9063] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 185/355 (52%), Positives = 258/355 (72%), Gaps = 3/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +S +++ + NR+ ++E +S++ ++K ++EY++I II I Y ++++D Sbjct: 1 MISLEKLESIVNRYNDLESSLSKTDIDKKEFVKNSKEYSSIGEIIETIKSYIDAIKDKED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D +SD EIR++A+ ++ I+ + +E E ++ LLPKD D+K+ I+EIRAGTG Sbjct: 61 LKKILSDKDSDIEIREMAEHDLEEIKSKEQEYEKKVKVFLLPKDEADEKNAIVEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF MY++ +++ W+VEVLS S ++ GGYKEIV TI+G+ VFS++KFESG Sbjct: 121 GLEASLFASDLFNMYQKVSSINGWRVEVLSVSASEAGGYKEIVFTITGKNVFSKLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVL EA E+DV I D+RID R+ G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLAEAEEVDVKIDENDLRIDVFRSGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V EKSQH+N+ +AM +LR+RLY+ ER R+ NERS RK QIG+G Sbjct: 241 SAVRITHIPTGVVVAIQDEKSQHKNKAKAMTILRSRLYEAERLRLENERSVARKSQIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR++DHRINLTL+KL L G ++ + L HQ +++ + Sbjct: 301 DRSERIRTYNFPQGRVSDHRINLTLHKLTGFLAGDDFAEMSDALQIKHQEELLEN 355 >gi|19746088|ref|NP_607224.1| peptide chain release factor 1 [Streptococcus pyogenes MGAS8232] gi|24418636|sp|Q8P125|RF1_STRP8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|19748260|gb|AAL97723.1| putative peptide chain release factor 1 [Streptococcus pyogenes MGAS8232] Length = 359 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 161/358 (44%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDQKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDIILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|260494288|ref|ZP_05814419.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_33] gi|260198434|gb|EEW95950.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_33] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 166/356 (46%), Positives = 243/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYDELNKMLVSPEILADSKKMIECNKALNEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D +++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 ESFK-TEKDPDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + GG KEI TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|69249626|ref|ZP_00605024.1| Peptide chain release factor 1 [Enterococcus faecium DO] gi|257880056|ref|ZP_05659709.1| peptide chain release factor 1 [Enterococcus faecium 1,230,933] gi|257882292|ref|ZP_05661945.1| peptide chain release factor 1 [Enterococcus faecium 1,231,502] gi|257885488|ref|ZP_05665141.1| peptide chain release factor 1 [Enterococcus faecium 1,231,501] gi|257891147|ref|ZP_05670800.1| peptide chain release factor 1 [Enterococcus faecium 1,231,410] gi|257893961|ref|ZP_05673614.1| peptide chain release factor 1 [Enterococcus faecium 1,231,408] gi|258614612|ref|ZP_05712382.1| peptide chain release factor 1 [Enterococcus faecium DO] gi|260560331|ref|ZP_05832507.1| peptide chain release factor 1 [Enterococcus faecium C68] gi|261208268|ref|ZP_05922941.1| peptide chain release factor 1 [Enterococcus faecium TC 6] gi|289565643|ref|ZP_06446089.1| peptide chain release factor 1 [Enterococcus faecium D344SRF] gi|293553327|ref|ZP_06673963.1| peptide chain release factor 1 [Enterococcus faecium E1039] gi|293563060|ref|ZP_06677526.1| peptide chain release factor 1 [Enterococcus faecium E1162] gi|293567649|ref|ZP_06678992.1| peptide chain release factor 1 [Enterococcus faecium E1071] gi|294615325|ref|ZP_06695200.1| peptide chain release factor 1 [Enterococcus faecium E1636] gi|294617194|ref|ZP_06696846.1| peptide chain release factor 1 [Enterococcus faecium E1679] gi|294623635|ref|ZP_06702473.1| peptide chain release factor 1 [Enterococcus faecium U0317] gi|314937739|ref|ZP_07845061.1| peptide chain release factor 1 [Enterococcus faecium TX0133a04] gi|314942363|ref|ZP_07849210.1| peptide chain release factor 1 [Enterococcus faecium TX0133C] gi|314947687|ref|ZP_07851096.1| peptide chain release factor 1 [Enterococcus faecium TX0082] gi|314952118|ref|ZP_07855137.1| peptide chain release factor 1 [Enterococcus faecium TX0133A] gi|314992371|ref|ZP_07857803.1| peptide chain release factor 1 [Enterococcus faecium TX0133B] gi|314997442|ref|ZP_07862389.1| peptide chain release factor 1 [Enterococcus faecium TX0133a01] gi|68194105|gb|EAN08645.1| Peptide chain release factor 1 [Enterococcus faecium DO] gi|257814284|gb|EEV43042.1| peptide chain release factor 1 [Enterococcus faecium 1,230,933] gi|257817950|gb|EEV45278.1| peptide chain release factor 1 [Enterococcus faecium 1,231,502] gi|257821344|gb|EEV48474.1| peptide chain release factor 1 [Enterococcus faecium 1,231,501] gi|257827507|gb|EEV54133.1| peptide chain release factor 1 [Enterococcus faecium 1,231,410] gi|257830340|gb|EEV56947.1| peptide chain release factor 1 [Enterococcus faecium 1,231,408] gi|260073676|gb|EEW62002.1| peptide chain release factor 1 [Enterococcus faecium C68] gi|260077525|gb|EEW65243.1| peptide chain release factor 1 [Enterococcus faecium TC 6] gi|289162611|gb|EFD10465.1| peptide chain release factor 1 [Enterococcus faecium D344SRF] gi|291589584|gb|EFF21389.1| peptide chain release factor 1 [Enterococcus faecium E1071] gi|291591828|gb|EFF23462.1| peptide chain release factor 1 [Enterococcus faecium E1636] gi|291596539|gb|EFF27780.1| peptide chain release factor 1 [Enterococcus faecium E1679] gi|291596961|gb|EFF28174.1| peptide chain release factor 1 [Enterococcus faecium U0317] gi|291602551|gb|EFF32767.1| peptide chain release factor 1 [Enterococcus faecium E1039] gi|291604974|gb|EFF34442.1| peptide chain release factor 1 [Enterococcus faecium E1162] gi|313588451|gb|EFR67296.1| peptide chain release factor 1 [Enterococcus faecium TX0133a01] gi|313593096|gb|EFR71941.1| peptide chain release factor 1 [Enterococcus faecium TX0133B] gi|313595737|gb|EFR74582.1| peptide chain release factor 1 [Enterococcus faecium TX0133A] gi|313598876|gb|EFR77721.1| peptide chain release factor 1 [Enterococcus faecium TX0133C] gi|313642877|gb|EFS07457.1| peptide chain release factor 1 [Enterococcus faecium TX0133a04] gi|313645928|gb|EFS10508.1| peptide chain release factor 1 [Enterococcus faecium TX0082] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y + Q D Sbjct: 3 DQLQAIEDRYEELGELLSDPEVISDTKRFMQLSKEEANTRETVEVYRRYKEVVQGITDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+ +LA+ E+ ++KE LE +I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLGEKLDD-EMAELAKEELSELKKEKEVLEEKIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WK EV+ ++ GGYKE++ I+G V+S++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAEAQGWKTEVMEANVTGIGGYKEVIMMITGDNVYSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++DI +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIDIEDKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMK+LRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQIKNREKAMKILRARVYDKIQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+I++ L+ Q + + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIVDALIMYDQTSKLEAM 354 >gi|145218953|ref|YP_001129662.1| peptide chain release factor 1 [Prosthecochloris vibrioformis DSM 265] gi|189039984|sp|A4SCF1|RF1_PROVI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145205117|gb|ABP36160.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium phaeovibrioides DSM 265] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 155/356 (43%), Positives = 231/356 (64%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + +K R ++E +++ + KL +EY+ + I+ Y K++ +D Sbjct: 3 DNLQSIKERHLDLERLLADPDAAGDQTRFRKLNKEYSDLREIVETYDRYSHIKKQLEDSR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E++ L + E+ ++++I LE EI LLLPKD D ++ ILEIRAGTGG Sbjct: 63 QLLK-NEQDQEMKALVEEEIEELQRQIPALEQEIKVLLLPKDEADSRNVILEIRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGV 182 EAALF DLFRMY+RYA + W ++L +++ GG++E +I+G VF MK+ESGV Sbjct: 122 EAALFTTDLFRMYQRYAEKQGWNFQMLDYNESSVPGGFREATISITGHDVFGTMKYESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I ED+R+DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPDTETQGRIHTSAASVAVLPEAEEVDVEIRKEDLRLDTYRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++ E+SQ QN+ RAMK+LRA+L+D++ R+ R+ + +GD Sbjct: 242 AVRITHMPTGMVAACQEERSQLQNKERAMKMLRAKLFDIQLAEQQQARADLRRTMVATGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RS +IRTYN+ Q R+TDHRI T + L +QG I ++I+ L Q + + +A + Sbjct: 302 RSAKIRTYNYPQSRVTDHRIGFTTHALPQFMQGEIGELIDALKMHDQTERLQAAQQ 357 >gi|257867023|ref|ZP_05646676.1| peptide chain release factor 1 [Enterococcus casseliflavus EC30] gi|257873358|ref|ZP_05653011.1| peptide chain release factor 1 [Enterococcus casseliflavus EC10] gi|257877101|ref|ZP_05656754.1| peptide chain release factor 1 [Enterococcus casseliflavus EC20] gi|325568363|ref|ZP_08144730.1| peptide chain release factor RF1 [Enterococcus casseliflavus ATCC 12755] gi|257801079|gb|EEV30009.1| peptide chain release factor 1 [Enterococcus casseliflavus EC30] gi|257807522|gb|EEV36344.1| peptide chain release factor 1 [Enterococcus casseliflavus EC10] gi|257811267|gb|EEV40087.1| peptide chain release factor 1 [Enterococcus casseliflavus EC20] gi|325158132|gb|EGC70285.1| peptide chain release factor RF1 [Enterococcus casseliflavus ATCC 12755] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 166/353 (47%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y + + +D Sbjct: 3 DQLQAIEDRYEELGELLSDPAVISDTKRFMQLSKEEANTRETVEVYRRYKEVVEGIKDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ N D+E+ ++A+ E+ ++KE LE I LLLPKD +DDK+ I+EIR GG Sbjct: 63 EMLGE-NLDAEMAEMAKEELSDLKKEKDVLEERIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WKVEV+ ++ GGYKE++ I+G VFS++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAENQGWKVEVMDANVTGIGGYKEVIMMITGDNVFSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++DI +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIDIADKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI V E+SQ +NR +AMKVLRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIAVAMQDERSQLKNREKAMKVLRARVYDQMQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+I++ L+ Q + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIVDALIVYDQTSKLDEM 354 >gi|239628684|ref|ZP_04671715.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518830|gb|EEQ58696.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 357 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 176/355 (49%), Positives = 257/355 (72%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ L + + + +L +E A ++PI+ Y Q KQ+ +D Sbjct: 3 DRLDDMLIHYEELMLMLGDPAVTQDTKRFTRLMKEQADLAPIVEAYKQYKQAKQDVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N E+R++A+ E+ +K I ELE+E+ LLLPKD +DDK+ ILEIRAG GG Sbjct: 63 ALLEEEND-EEMREMAKEELSDAKKRIEELEHELKILLLPKDPNDDKNIILEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA +WKVE++S ++N GG+KE+VA ++G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYSNYADSHRWKVEIISLNENGIGGFKEVVAMVTGKGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA E+DV I + DIRID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEEVDVQIDMNDIRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ + + R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDIELEKRQSSEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++++ L+ A QA + SE Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDSIMNGDIQELLDNLIAADQAAKLAKMSE 356 >gi|66361428|pdb|1ZBT|A Chain A, Crystal Structure Of Peptide Chain Release Factor 1 (Rf-1) (Smu.1085) From Streptococcus Mutans At 2.34 A Resolution Length = 371 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 224/354 (63%), Gaps = 4/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ V + +L+ E A ++ Y Q Q D Sbjct: 17 DQLQAVEDRYEELGELLSDPDVVSDTKRFXELSREEANSRETVAVYREYKQVVQNIADAQ 76 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 I D + D E+ + A+ E+ + E E ++ +LLLPKD +DDK+ ILEIR GG Sbjct: 77 EXIKDASGDPELEEXAKEELKNSKVAKEEYEEKLRFLLLPKDPNDDKNIILEIRGAAGGD 136 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL Y++YA + WK EV +S N GG KE+VA +SG+ V+S++K+ESG H Sbjct: 137 EAALFAGDLLNXYQKYAENQGWKFEVXEASANGVGGLKEVVAXVSGQSVYSKLKYESGAH 196 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS ATV V PE E++ +I +D+R+D ASG+GGQ+VN +A Sbjct: 197 RVQRVPVTESQGRVHTSTATVLVXPEVEEVEYEIDPKDLRVDIYHASGAGGQNVNKVATA 256 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI H+PT I V E++Q +NR +A K++RAR+ D + +E+ A RK +G+GDR Sbjct: 257 VRIIHLPTNIKVEXQEERTQQKNRDKAXKIIRARVADHFAQIAQDEQDAERKSTVGTGDR 316 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 317 SERIRTYNFPQNRVTDHRIGLTLQKLDSILSGKLDEVIDALILYDQTQKLEELN 370 >gi|55820816|ref|YP_139258.1| peptide chain release factor 1 [Streptococcus thermophilus LMG 18311] gi|55822719|ref|YP_141160.1| peptide chain release factor 1 [Streptococcus thermophilus CNRZ1066] gi|116627620|ref|YP_820239.1| peptide chain release factor 1 [Streptococcus thermophilus LMD-9] gi|81559540|sp|Q5M0B7|RF1_STRT1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|81560720|sp|Q5M4W4|RF1_STRT2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|122267782|sp|Q03L79|RF1_STRTD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|55736801|gb|AAV60443.1| peptide chain release factor 1 [Streptococcus thermophilus LMG 18311] gi|55738704|gb|AAV62345.1| peptide chain release factor 1 [Streptococcus thermophilus CNRZ1066] gi|116100897|gb|ABJ66043.1| bacterial peptide chain release factor 1 (bRF-1) [Streptococcus thermophilus LMD-9] gi|312278142|gb|ADQ62799.1| Peptide chain release factor 1 [Streptococcus thermophilus ND03] Length = 359 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 230/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPEVVSDTKRFMELSREEANTRETVIAYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D+++ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKEASGDADLEEMAKEELKKSKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG V+S++K+E Sbjct: 121 AGGDEAALFAGDLLAMYQKYAETQGWRFEVMEASYNGVGGIKEVVAMVSGESVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEMEYEIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +A+K++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKALKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILAGKMDEVIDALVLYDQTQKLEELN 358 >gi|241763794|ref|ZP_04761840.1| peptide chain release factor 1 [Acidovorax delafieldii 2AN] gi|241366926|gb|EER61331.1| peptide chain release factor 1 [Acidovorax delafieldii 2AN] Length = 362 Score = 268 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 169/361 (46%), Positives = 234/361 (64%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ I + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLGELDFLLSREDIMADMAQYRTISREHAEVTQIAGRYARYQQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++AQ E+ + E E+ +LE+E+ LLLPKD DD ++ +EIR Sbjct: 61 DLAGAREMLA----DPDMAEMAQEEITSAEAELLQLEDELQRLLLPKDPDDARNAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA WKVEV+S + + GGYKEIV I G V+ +K Sbjct: 117 AGTGGDESALFAGDLTRMYMRYADRVGWKVEVVSENAAELGGYKEIVLRIEGDHVYGALK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEHEAIKLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL+YV+ G + D++ L A +A+ + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLQYVMDGDLADVLQALAHAREAEQLEEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|325921457|ref|ZP_08183312.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas gardneri ATCC 19865] gi|325548004|gb|EGD19003.1| bacterial peptide chain release factor 1 (bRF-1) [Xanthomonas gardneri ATCC 19865] Length = 361 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 167/363 (46%), Positives = 244/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPEVVSNNDKFRTLSRELSQLEPLAVALEDEARAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + +D E+R+LA+ E+ + + EL+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLSAAEAM----RNDPEMRELAEEEIATAQARLDELDAQLALLLVPRDPRDEGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLVEAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|149185458|ref|ZP_01863774.1| protein chain release factor A [Erythrobacter sp. SD-21] gi|148830678|gb|EDL49113.1| protein chain release factor A [Erythrobacter sp. SD-21] Length = 355 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 169/357 (47%), Positives = 249/357 (69%), Gaps = 7/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ + +RFAE+E RM+ D +++ + +YA + P+ + ++E L Sbjct: 3 IPAERLDQIAHRFAELEARMASGTLEGDEFVQASRDYAELEPVAKVAAEVKAAREEIASL 62 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E++ +A+ E+ ++K + E ++ +LP+D+ D+K +LEIRAGTGG Sbjct: 63 EDMLA----DPEMKAMAEEELAELQKRLPAAERQLAIAMLPRDSADNKPAMLEIRAGTGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF GDLFRMYERYAA WKVE +S + ++ GG+KEIVA+++G VF+++KFESGV Sbjct: 119 DEAALFAGDLFRMYERYAAEMGWKVEPVSMNASEVGGFKEIVASVTGPNVFAKLKFESGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAATVAVLPE E+DV + +++IDT RASG+GGQHVNTTDS Sbjct: 179 HRVQRVPETESGGRIHTSAATVAVLPEPDEVDVQLDPTELKIDTYRASGAGGQHVNTTDS 238 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+PTG +V +SQH+N+ +AM+VLR RLYD +R+ + RK +GSGD Sbjct: 239 AIRITHLPTGTVVTCQDGRSQHKNKEKAMQVLRTRLYDAQREATQGAEAEARKAMVGSGD 298 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSASE 357 RSERIRTYN+ QGR+TDHRI LTL KL ++ G + +++ L+ +AK + + ++ Sbjct: 299 RSERIRTYNYPQGRVTDHRIGLTLQKLPQIIAGPGLAELVEALIAEDEAKRLAAMND 355 >gi|298209284|ref|YP_003717463.1| peptide chain release factor 1 [Croceibacter atlanticus HTCC2559] gi|83849211|gb|EAP87080.1| peptide chain release factor 1 [Croceibacter atlanticus HTCC2559] Length = 358 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 150/357 (42%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF EI + + + Y++LT+EY + ++ + Y + ++ Sbjct: 1 MLEKLNIVKQRFDEISDLIIQPDIISDQKRYVELTKEYKDLKKLMDERENYIRVTNRIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD E+ ++A++++ + E+ L+++I +L+PKD +D K+ ++E+RAGTG Sbjct: 61 AEEIIAD-GSDPEMSEMAKMQLDEAKSELPALDDKIRMMLIPKDPEDSKNAVVEVRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GD++RM ++ + W + S+ GG+KEI +SG V+ +K+E+G Sbjct: 120 GDEASIFAGDIYRMLTKFCESKGWNCSTVDFSEGTSGGFKEIQFEVSGDDVYGTLKYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV V PEA E DV+I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVFPEAEEFDVEIDPKDVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++ +KSQH+N+ +A KVLR+RLYD+E + E +A R + SG Sbjct: 240 SAVRLTHEPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDLELAKKQEEDAAKRGSMVTSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++QGR+TDHRINLT+Y L+ ++ G I II+ L + + E Sbjct: 300 DRSAKIRTYNYAQGRVTDHRINLTIYDLQNIIDGDIQRIIDELRLVENTEKLKETGE 356 >gi|296327945|ref|ZP_06870480.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154901|gb|EFG95683.1| peptide chain release factor RF1 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 365 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 166/356 (46%), Positives = 242/356 (67%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 11 DKLEEVVARYDELNKMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 70 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 DS+++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 71 ESFK-TEKDSDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 129 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + GG KEI TI G G +SR+KFESGVH Sbjct: 130 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVH 189 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE +I + +D++IDT R+ G+GGQHVN TDS Sbjct: 190 RVQRVPKTEASGRIHTSTATVAVLPEVEDIQEVTVDPKDLKIDTYRSGGAGGQHVNMTDS 249 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 250 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 309 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 310 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 365 >gi|226952752|ref|ZP_03823216.1| peptide chain release factor 1 [Acinetobacter sp. ATCC 27244] gi|294650077|ref|ZP_06727461.1| peptide chain release factor RF1 [Acinetobacter haemolyticus ATCC 19194] gi|226836501|gb|EEH68884.1| peptide chain release factor 1 [Acinetobacter sp. ATCC 27244] gi|292824028|gb|EFF82847.1| peptide chain release factor RF1 [Acinetobacter haemolyticus ATCC 19194] Length = 362 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 163/362 (45%), Positives = 242/362 (66%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + KL+ E+ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADVEVISDNKRFRKLSREHNDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIKENKARLVELEDQLNVLMIPKDPNDANAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GGYKE++ I G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQGWRIEVLSENEGEHGGYKEVICRIDGEGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIP+G++V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPSGVVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|313206514|ref|YP_004045691.1| bacterial peptide chain release factor 1 (brf-1) [Riemerella anatipestifer DSM 15868] gi|312445830|gb|ADQ82185.1| bacterial peptide chain release factor 1 (bRF-1) [Riemerella anatipestifer DSM 15868] gi|325336038|gb|ADZ12312.1| Protein chain release factor A [Riemerella anatipestifer RA-GD] Length = 362 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 226/361 (62%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ +K R+ E+ + + + + L +EY+ + I+ Y Sbjct: 1 MSKSLIPKLEAIKQRYNEVADLIIQPDVISDQKRYSSLNKEYSDLGKIVKVFDEYSTALN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ +I D SD ++ DLA++E I +E E+ YLL+PKD DDK+ ++E+R Sbjct: 61 AIKEADEIIAD-GSDKDLVDLAKMEKQEAIDRIPSIEEELKYLLIPKDPADDKNVMVELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+A+FV D++RMY Y + WK EV S+ GYKE++ + G GV+ MK Sbjct: 120 AGTGGDESAIFVEDVYRMYTMYFKSKGWKHEVTD-SNEASKGYKELIMRVEGDGVYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVP TE+ GRVHTSA TVAVLPEA E+DV+I DI + T R+ G+GGQ+V Sbjct: 179 FESGVHRVQRVPETESQGRVHTSAITVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N ++ V++TH PTGI+V +SQ NR AM++LR +LYD+E +++ + +A RK Sbjct: 239 NKVETKVQLTHKPTGIVVVCQQARSQLANRELAMEMLRTKLYDIELQKVQGDIAAQRKTM 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + +GDRS +IRTYN+ QGR+TDHRIN ++Y L+ + G I ++++ L+ A A+ + Sbjct: 299 VSTGDRSAKIRTYNYPQGRVTDHRINKSIYNLDNFMNGDIQEMLDALIMAENAEKMKGEE 358 Query: 357 E 357 E Sbjct: 359 E 359 >gi|257467857|ref|ZP_05631953.1| peptide chain release factor 1 [Fusobacterium ulcerans ATCC 49185] gi|317062146|ref|ZP_07926631.1| bacterial peptide chain release factor 1 [Fusobacterium ulcerans ATCC 49185] gi|313687822|gb|EFS24657.1| bacterial peptide chain release factor 1 [Fusobacterium ulcerans ATCC 49185] Length = 358 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 244/355 (68%), Gaps = 6/355 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ RF E+ + + K+ + + I+PI+ K Y + ++ + Sbjct: 4 KLEEVVKRFDELNELLGSPEVLADPKKMMECNKSLSEITPIVEKYKEYKRVVEDFDFIKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D ++R++ E+ +E+ I ELE E+ LLLPKD +DDK+ I+EIR G GG E Sbjct: 64 NLK-TEKDQDMREMMHEELKELEESIPELEKELKVLLLPKDENDDKNVIIEIRGGAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF G+LFRMY RYA +KWK+E++ + GG KE V +I+G G +SR+KFESGVHR Sbjct: 123 AALFAGNLFRMYSRYAERKKWKMEIIEKQEMGIGGIKEAVFSINGFGAYSRLKFESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE++GRVHTS ATVAVLPE + +V I D++IDT R+ G+GGQHVN TDSA Sbjct: 183 VQRVPETESAGRVHTSTATVAVLPEVEDVKEVKIDPRDLKIDTYRSGGAGGQHVNMTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V E+SQ +NR +AMK L ++L+++E ++ ++ + R+LQ+G+GDR Sbjct: 243 VRITHLPTGIIVQCQDERSQLKNREKAMKHLASKLFEMECEKQRSQVESERRLQVGTGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ QGRITDHRI T+Y+LE L G +D++I+ L+T QA+M+ S SE Sbjct: 303 SEKIRTYNYPQGRITDHRIKFTVYQLEAYLDGDLDEMIDALITFSQAEMLSSVSE 357 >gi|229496751|ref|ZP_04390462.1| peptide chain release factor 1 [Porphyromonas endodontalis ATCC 35406] gi|229316297|gb|EEN82219.1| peptide chain release factor 1 [Porphyromonas endodontalis ATCC 35406] Length = 362 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 158/352 (44%), Positives = 235/352 (66%), Gaps = 5/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L+ RF E+ L +++ + +++L++EY + + Y++ K Q+ + Sbjct: 10 LQNLEARFEEVALLITDPSVIADDKRFVRLSKEYRRLEELHQAHEEYNRLKLNRQEAMEL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E++ LA+ E+ +++ +L+ +I LLLP D +D K+ I+EIRAGTGG EA Sbjct: 70 LN-GTDDEEMKALAKEEIAFADEQCPQLQEKIALLLLPDDPEDGKNAIMEIRAGTGGDEA 128 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF DLF+MY R+ W+VEV S ++ GGYKEIV +++G + +K+ESGVHRV Sbjct: 129 ALFARDLFKMYTRFVEGLGWRVEVSSYTEGTLGGYKEIVFSVTGDNAYGTLKYESGVHRV 188 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TEA GR+HTSAATVAV PEA E DV+I D+RIDT +SG+GGQ VNTT SAVR Sbjct: 189 QRVPETEAQGRIHTSAATVAVFPEADEFDVEIKESDLRIDTFCSSGAGGQSVNTTYSAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTGI V + E+SQ +N+ +A+ LR+R+Y++E ++ +E ++ RK + +GDRS Sbjct: 249 IVHVPTGITVQSQDERSQLKNKAKALTELRSRIYNLEHQKYLDEVASRRKTMVSTGDRSA 308 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ QGR+TDHRI LTLY L+ VL G + II+ L ++ + A+ Sbjct: 309 KIRTYNYPQGRLTDHRIGLTLYNLQAVLDGDLKPIIDALSVTENSERLQEAA 360 >gi|160900908|ref|YP_001566490.1| peptide chain release factor 1 [Delftia acidovorans SPH-1] gi|238687199|sp|A9BP60|RF1_DELAS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160366492|gb|ABX38105.1| peptide chain release factor 1 [Delftia acidovorans SPH-1] Length = 360 Score = 267 bits (683), Expect = 1e-69, Method: Composition-based stats. Identities = 164/360 (45%), Positives = 237/360 (65%), Gaps = 9/360 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +Q+ R E+ +S + Y ++ E+A ++ I + + + Q++ Sbjct: 1 MQDFLRQQLERYAQRLEELNFLLSREDIMGDMKQYRAISREHADVTAIAGRYARHRQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ SD ++ D+AQ E+ + E E+ +LE+E+ LLLPKD DD ++ LEIR Sbjct: 61 DLAAAQDML----SDPDMADMAQEEIASAEAELVQLEDELQRLLLPKDPDDARNAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY R+ WKVE++S+++++ GGYKE+V + G V+ R++ Sbjct: 117 AGTGGDESALFAGDLARMYTRHCDAVGWKVEIMSANESELGGYKEVVLRVEGTDVYGRLR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDETQAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+ARL + ER + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARLQEKERSEREAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLT+YKL V++G + D+++ L A +A+++ Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTIYKLLAVMEGDLGDVLDALQAAREAELLAEL 356 >gi|227552473|ref|ZP_03982522.1| peptide chain release factor RF1 [Enterococcus faecium TX1330] gi|257888289|ref|ZP_05667942.1| peptide chain release factor 1 [Enterococcus faecium 1,141,733] gi|257896821|ref|ZP_05676474.1| peptide chain release factor 1 [Enterococcus faecium Com12] gi|257899725|ref|ZP_05679378.1| peptide chain release factor 1 [Enterococcus faecium Com15] gi|293378550|ref|ZP_06624713.1| peptide chain release factor 1 [Enterococcus faecium PC4.1] gi|293571480|ref|ZP_06682507.1| peptide chain release factor 1 [Enterococcus faecium E980] gi|227178385|gb|EEI59357.1| peptide chain release factor RF1 [Enterococcus faecium TX1330] gi|257824343|gb|EEV51275.1| peptide chain release factor 1 [Enterococcus faecium 1,141,733] gi|257833386|gb|EEV59807.1| peptide chain release factor 1 [Enterococcus faecium Com12] gi|257837637|gb|EEV62711.1| peptide chain release factor 1 [Enterococcus faecium Com15] gi|291608485|gb|EFF37780.1| peptide chain release factor 1 [Enterococcus faecium E980] gi|292642879|gb|EFF61026.1| peptide chain release factor 1 [Enterococcus faecium PC4.1] Length = 357 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 164/353 (46%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++R+ E+ +S+ + +++L++E A + Y + Q D Sbjct: 3 DQLQSIEDRYEELGELLSDPEVISDTKRFMQLSKEEANTRETVEVYRRYKEVVQGITDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+ +LA+ E+ ++KE LE +I LLLPKD +DDK+ I+EIR GG Sbjct: 63 ELLGEKLDD-EMAELAKEELSELKKEKEVLEEKIKILLLPKDPNDDKNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF MY++YA + WK EV+ ++ GGYKE++ I+G V+S++K+ESG H Sbjct: 122 EAALFAGDLFNMYQKYAEAQGWKTEVMEANVTGIGGYKEVIMMITGENVYSKLKYESGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++DI +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVEIDIEDKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V E+SQ +NR +AMK+LRAR+YD ++ +E ANRK +G+GDR Sbjct: 242 VRLTHLPTGIVVAMQDERSQIKNREKAMKILRARVYDKIQQEAQSEYDANRKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRI LT+ KL+ +L G +D+I++ L+ Q + + Sbjct: 302 SERIRTYNFPQNRVTDHRIGLTIQKLDQILAGKLDEIVDALIMYDQTSKLEAM 354 >gi|297182760|gb|ADI18914.1| protein chain release factor a [uncultured SAR11 cluster bacterium HF0010_09O16] Length = 356 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 176/356 (49%), Positives = 246/356 (69%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I +L +R + +E ++ + + ++EY+ ++ I++ Y K ++ + Sbjct: 1 MIPEKTIEELISRHSSLEKDLASGNVDKKLFAEKSKEYSDLNEIVNSAKKYASYKNDKIE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D NSD E+ +A E+ + + + E ++ LLPKD D K+ I+EIRAGTG Sbjct: 61 LEKILNDKNSDEELMKMAHTELSELNSQFEQNEKKLKLFLLPKDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF GDLF+MYE+ +KW +E++S S +D GG KE++A+I G ++S +K+ESG Sbjct: 121 GLEASLFAGDLFKMYEKVCNKKKWSLELISISRSDAGGLKEVIASIKGNNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I D+RID RA G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINETDLRIDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G+ V+ + KSQH+N+ + MK+LRARLY++ER R+ ERSA+RK +IG+G Sbjct: 241 SAVRITHLPSGLSVSQQDEKSQHKNKAKGMKILRARLYELERTRIDQERSADRKSKIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTL+KLE L+G D+II L Q + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLEEFLEGEAFDEIIESLSLKAQEESLSKL 356 >gi|269123393|ref|YP_003305970.1| peptide chain release factor 1 [Streptobacillus moniliformis DSM 12112] gi|268314719|gb|ACZ01093.1| peptide chain release factor 1 [Streptobacillus moniliformis DSM 12112] Length = 358 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 167/356 (46%), Positives = 245/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ ++ EI + + KL + + +S I+ K +Y KK+ + Sbjct: 3 QKLDEVVEKYEEINRLLMSQEVLSDPKKLMEYNKTLSQMSEIVEKYLLYKSKKEALEQYK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+ ++ +E+ IE+EI LE E+ LLLPKD +D+K+ I+E+RAG GG Sbjct: 63 EEVK-SEKDEEMLEMLNMEIDTIEEEIPRLEEELKILLLPKDPNDEKNVIVELRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV D+FRM+ RYA KWK E++ ++ GG KEI ISG+G +SR+KFESGVH Sbjct: 122 EAALFVSDIFRMFTRYAERNKWKTEIIDKNEIGVGGLKEITFLISGKGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS TVAVLPE +++ I D++IDT R+SG+GGQHVNTTDS Sbjct: 182 RVQRVPDTEASGRIHTSTITVAVLPEIDDVEQVAINPSDLQIDTYRSSGAGGQHVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTGI+V + +SQ +N+ AMKVL ++LY++E ++ + A R+ Q+G+GD Sbjct: 242 AVRITHKPTGIVVTSQDGRSQIKNKEAAMKVLASKLYEIEVEKQRSSVEAERRSQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYN+ QGR+TDHRI LTL++L+ +L G +D+II+ L+ +QA+++ ++ E Sbjct: 302 RSEKIRTYNYPQGRVTDHRIKLTLHRLDAILDGALDEIIDALIAFNQAELLKNSGE 357 >gi|15839238|ref|NP_299926.1| peptide chain release factor 1 [Xylella fastidiosa 9a5c] gi|20139358|sp|Q9PA71|RF1_XYLFA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|9107880|gb|AAF85446.1|AE004071_14 peptide chain release factor 1 [Xylella fastidiosa 9a5c] Length = 361 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 175/362 (48%), Positives = 247/362 (68%), Gaps = 10/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+E +S+ V D + + E A ++PI + ++ + K Sbjct: 1 MKPTLRRKLEALVERHEELERLLSDPKIVSDTDRFRTYSRELAQLAPIATTLAEETRTKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + T+ +D E+R+LA+ E+ + + L+ E+ LL+P+D D+ + LE+R Sbjct: 61 DLAAAETL----RTDPEMRELAEQEIAIAQAHLTTLDEELQRLLIPQDPRDECNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F G+LFRMY RYA ++WKVEV S + + GGYKEI+A I GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGNLFRMYTRYAERQRWKVEVESDTPGEHGGYKEIIARIVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA EI D++IDT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+PTG++V + +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHLPTGVVVESQTERSQHANRDKAMKRLKAQLIESERSQQATAEAMTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTYNF QGRITDHR+ NLTLY L +++G +D +I+ L HQA+ + Sbjct: 297 QVGSGDRSQRIRTYNFPQGRITDHRVENLTLYDLPNIIEGDLDPLIDRLRQEHQAEELAR 356 Query: 355 AS 356 S Sbjct: 357 LS 358 >gi|319761653|ref|YP_004125590.1| peptide chain release factor 1 [Alicycliphilus denitrificans BC] gi|317116214|gb|ADU98702.1| peptide chain release factor 1 [Alicycliphilus denitrificans BC] Length = 360 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 241/361 (66%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R +E++ +S + Y ++ E+A ++ + + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLSELDFLLSREDIMADMQQYRAISREHADVTAVAGRYARYRQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D ++ ++AQ E+ A E E+ +LE+E+ +LLPKD DD+++ +EIR Sbjct: 61 DLEGAREMLE----DPDMAEMAQEEIAAAEAELAQLEDELQRMLLPKDPDDERNAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA + WKVEV+S+++++ GGYKE+V I G + R++ Sbjct: 117 AGTGGDESALFAGDLARMYTRYAATQGWKVEVMSANESELGGYKEVVLRIEGDHAYGRLR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEAQAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHANKAKALQVLQARIQEKERSERAAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL V++G + +++ L A +A+++ Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAVMEGDLGEVLQALQHAREAELLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|167041537|gb|ABZ06286.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine microorganism HF4000_008B14] Length = 360 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 152/352 (43%), Positives = 230/352 (65%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ EIE M + L E A++ ++ Y + E+ DL+ Sbjct: 6 DKLDPVLTRYNEIEEAMGRPEVATDFEQVQTLARERASLETLVDIAHRYRKLADEQGDLN 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ +A+ E+ EK++ +L E+ LLPKD +DD+ I+EIR+G GG+ Sbjct: 66 ALLQE-GGDAELTKMAKDELDETEKQVEQLAEELKIALLPKDPNDDRDVIVEIRSGAGGN 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF DL+R Y RYA L W+V+V+ S+ +D GG +IV I G+G FSR+K+E GVH Sbjct: 125 EASLFASDLYRAYTRYAQLHHWQVDVMDSNPSDLGGLNKIVFGIQGKGAFSRLKYERGVH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+HTS ATVAVL A E+D+ I +D+RID A G GGQ+VN +A Sbjct: 185 RVQRVPDTEAQGRIHTSTATVAVLARADEVDIKISPDDLRIDIFHAGGHGGQNVNKVATA 244 Query: 244 VRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI + PTG ++ E+SQ++N+ +AM +LRA+LYD E++++A ERS R+ Q+G+ DR Sbjct: 245 VRIVYEPTGLTVICQDERSQYKNKTKAMAMLRAKLYDAEQEKIAAERSETRRSQVGNADR 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SE+IRTYN+ Q RITDHR+ + + + ++ G +DD+I+ L+T Q K++ Sbjct: 305 SEKIRTYNYPQDRITDHRVGASFHGIPRIMDGELDDLIDSLVTWEQEKLLAE 356 >gi|86152274|ref|ZP_01070485.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 260.94] gi|121613478|ref|YP_001001255.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 81-176] gi|148925756|ref|ZP_01809444.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CG8486] gi|157415831|ref|YP_001483087.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 81116] gi|166223544|sp|A1W1L4|RF1_CAMJJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|172047202|sp|A8FNS3|RF1_CAMJ8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|85840763|gb|EAQ58014.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 260.94] gi|87249710|gb|EAQ72669.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 81-176] gi|145845766|gb|EDK22857.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CG8486] gi|157386795|gb|ABV53110.1| peptide chain release factor RF-1 [Campylobacter jejuni subsp. jejuni 81116] gi|307748468|gb|ADN91738.1| Peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni M1] gi|315931656|gb|EFV10617.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 327] Length = 355 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|254796771|ref|YP_003081607.1| peptide chain release factor 1 [Neorickettsia risticii str. Illinois] gi|254590013|gb|ACT69375.1| peptide chain release factor 1 [Neorickettsia risticii str. Illinois] Length = 367 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 179/352 (50%), Positives = 250/352 (71%), Gaps = 4/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ NR + R+ ++ + KL++EYA + P + I+ Y + K+E+ L ++ Sbjct: 8 LEEILNRHTYLADRLRCPETIPSQEFSKLSKEYAELKPKVELITRYKKLKEEQAYLELLV 67 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D EIR++ + ++ AI+ + +LE EI +LLPKD DD + +LE+RAGTGG EAA Sbjct: 68 KNPLEDQEIREIGKSDLQAIQDVVPKLEFEIRRMLLPKDKDDALNVMLEVRAGTGGDEAA 127 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF LF MY++YA KW+ E++S S N+ GGYKE A+ISG VF+++KFESGVHRVQ Sbjct: 128 LFAASLFHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSEVFAKLKFESGVHRVQ 187 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE++GR+HTS ATVAVLPE ++DV I +D+RID R+SG GGQ VNTTDSAVR+ Sbjct: 188 RVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRV 247 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V EKSQH+NR +AMKVL+ RLY++ER ++ E S+ RK QIGSG+RSE+ Sbjct: 248 THIPTGIVVIQQDEKSQHKNRAKAMKVLKVRLYEIERNKVQQEISSMRKSQIGSGERSEK 307 Query: 306 IRTYNFSQGRITDHRINLTLYKLEY-VLQGYIDDIINPLLTAHQAKMIGSAS 356 RTYNF QGRITDHRINLT Y++ V +G ++ II L+ ++A+M+ Sbjct: 308 TRTYNFPQGRITDHRINLTTYRINETVKEGELEPIIEALIRENEARMLAGVE 359 >gi|34763568|ref|ZP_00144503.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742325|ref|ZP_04572806.1| peptide chain release factor 1 [Fusobacterium sp. 4_1_13] gi|256845604|ref|ZP_05551062.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_36A2] gi|294785107|ref|ZP_06750395.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_27] gi|27886757|gb|EAA23895.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429973|gb|EEO40185.1| peptide chain release factor 1 [Fusobacterium sp. 4_1_13] gi|256719163|gb|EEU32718.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_36A2] gi|294486821|gb|EFG34183.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_27] Length = 357 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 168/356 (47%), Positives = 244/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYDELNKMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 DS+++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIRAG GG Sbjct: 63 ESFK-TEKDSDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + GG KEI TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELGGIKEIAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT RA G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRAGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|57505831|ref|ZP_00371756.1| peptide chain release factor 1 [Campylobacter upsaliensis RM3195] gi|57015861|gb|EAL52650.1| peptide chain release factor 1 [Campylobacter upsaliensis RM3195] Length = 355 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 246/358 (68%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ R+ E+ +S++ ++ K L++E + PI+ K Y + + Sbjct: 1 MLAEKLQPFLKRYEELNTLLSDTKIINDIEKMTSLSKEQKNLEPIVLKTKDYFNTLTQIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ +D E +LA+ E+ +E+E E EI LLLPKD +D+K+ LEIRAGT Sbjct: 61 DNKALL----NDPEFSELAKEELKNLEEEKINFEEEIKILLLPKDPNDEKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LFVGDL + Y +YA LR +K+E++SSS+ GG+KE++ + G G +SR+KFES Sbjct: 117 GGDEASLFVGDLVKAYAKYADLRGYKIEIVSSSEGSAGGFKELIMLVKGTGAYSRLKFES 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+P TE+ GR+HTSA TVA++PE +I++ I D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRIPQTESQGRIHTSAITVAIMPEVDDIEIQINPNDLKIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+G++V KSQH+N+ AMK+L+ARLY+++ + S RK Q+GS Sbjct: 237 DSAVRITHIPSGLVVVNQDGKSQHKNKESAMKILKARLYEMQESERLAKESEARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RI+DHRINLTLY+L+ +++G + D++I PL+ HQ++ + + Sbjct: 297 GDRSERIRTYNFPQNRISDHRINLTLYRLDAIMEGGLFDELIEPLIAHHQSEALKAEE 354 >gi|326790732|ref|YP_004308553.1| peptide chain release factor 1 [Clostridium lentocellum DSM 5427] gi|326541496|gb|ADZ83355.1| peptide chain release factor 1 [Clostridium lentocellum DSM 5427] Length = 357 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 166/352 (47%), Positives = 242/352 (68%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 Q+ +L +++ I ++S+ + + KL +E++ + I+ K Y + + Sbjct: 3 DQLQELVDKYHIIGDQISQPEVIADQERWQKLMKEHSDLKEIVEKYEEYKATLEAIDEAL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D N D + R+L + E+ +K + LENEI LLLPKD +DDK+ I+EIR G GG Sbjct: 63 M-MLDDNLDDDFRELVKEELAENKKRVEPLENEIKLLLLPKDPNDDKNVIMEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA +WK E++S ++N GG+KE++ + G+G +S++K+ESGVH Sbjct: 122 EAALFAAELYRMYCYYAESHRWKTELMSLNENGIGGFKEVIFMVKGQGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+PATE+ GR+HTS TVAV+PEA E+DV + + D+RID RASG+GGQ VNTTDSA Sbjct: 182 RVQRIPATESGGRIHTSTVTVAVMPEAEELDVQLDMNDVRIDVCRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR H+PTG+MV EKSQ +N+ +A+K+LR RL+D+E+ + E +A +K +G+GDR Sbjct: 242 VRALHVPTGLMVYCQDEKSQLKNKEKALKILRTRLFDLEQAKAHAEMAAEKKSLVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYNF QGR+TDHR+ LTL+KLE VL G +++II+ L T Q + + Sbjct: 302 SERIRTYNFPQGRVTDHRVGLTLHKLEQVLDGDLEEIISTLTTVDQTDKLKA 353 >gi|223932122|ref|ZP_03624126.1| peptide chain release factor 1 [Streptococcus suis 89/1591] gi|302023743|ref|ZP_07248954.1| peptide chain release factor 1 [Streptococcus suis 05HAS68] gi|330832776|ref|YP_004401601.1| peptide chain release factor 1 [Streptococcus suis ST3] gi|223899103|gb|EEF65460.1| peptide chain release factor 1 [Streptococcus suis 89/1591] gi|329306999|gb|AEB81415.1| peptide chain release factor 1 [Streptococcus suis ST3] Length = 359 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 153/358 (42%), Positives = 233/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E AA ++ Y Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAATRDTVTAYREYKTVLQNM 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + + D+++ ++A+ E+ + + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESSGDADLEEMAKEELKQAKADKEAYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEGQGWRFEVMEASYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVVDALVLYDQTQKLEELN 358 >gi|302384870|ref|YP_003820692.1| peptide chain release factor 1 [Clostridium saccharolyticum WM1] gi|302195498|gb|ADL03069.1| peptide chain release factor 1 [Clostridium saccharolyticum WM1] Length = 358 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 172/355 (48%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ D+ + E+ ++ + + KL +E A ++ ++ + Y + KQ +D Sbjct: 3 DKLDDILIHYEELMQELNNPSVTEDQNRFRKLMKEQADLADLVETYTQYKKAKQTVEDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E+R++A+ E+ +K+I LE E+ LLLPKD +DDK+ ILEIRAG GG Sbjct: 63 ALLEEESD-EEMREMAKEELSEAKKQIEALEQELKILLLPKDPNDDKNIILEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +L+RMY YA WKVE++S ++N GG+KE+VA I+G+G +S+MK+ESGVH Sbjct: 122 EAALFASELYRMYVNYAEGHHWKVELISVNENGIGGFKEVVAMITGKGAYSKMKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PEA E DV I +D+RID MRASG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEAEEFDVVIEDKDVRIDVMRASGNGGQCVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI++ + +EKSQ QN+ +A ++LR++LYD+E ++ N + R+ QIG+GDR Sbjct: 242 VRLTHMPTGIVIYSQTEKSQLQNKEKAFRLLRSKLYDIELEKRQNSEAEERRSQIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLYK++ ++ G I ++++ L+ A QA + +E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYKIDSIMNGDIQELLDSLIAADQAVRLSKLNE 356 >gi|306827355|ref|ZP_07460642.1| peptide chain release factor RF1 [Streptococcus pyogenes ATCC 10782] gi|304430502|gb|EFM33524.1| peptide chain release factor RF1 [Streptococcus pyogenes ATCC 10782] Length = 359 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 234/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVIQTI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D E+ ++A+ E+ + E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDPELEEMAKEELKESKAAKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNFSQ R+TDHRI LTL KL+ +L G +D++I+ L+ Q K + S + Sbjct: 301 TGDRSERIRTYNFSQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTKKLESLN 358 >gi|262372379|ref|ZP_06065658.1| peptide chain release factor 1 [Acinetobacter junii SH205] gi|262312404|gb|EEY93489.1| peptide chain release factor 1 [Acinetobacter junii SH205] Length = 362 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 162/362 (44%), Positives = 241/362 (66%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ +++ + + KL+ E+ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADVEVISDNKRFRKLSREHNDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ + + ELE ++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIKENKALLVELEEQLNVLMIPKDPNDANAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GGYKE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAETQGWRIEVLSENEGEHGGYKEVICRVDGEGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEVDVDTTVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIP+G++V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 237 INKTDSAVRITHIPSGVVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 297 LVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAML 356 Query: 356 SE 357 ++ Sbjct: 357 AQ 358 >gi|225848358|ref|YP_002728521.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644346|gb|ACN99396.1| peptide chain release factor 1 [Sulfurihydrogenibium azorense Az-Fu1] Length = 360 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 170/360 (47%), Positives = 248/360 (68%), Gaps = 5/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQ 57 M QI +++ + ++E +++ + K+ +E+ +S I+S + Y++ Sbjct: 1 MKKKILDQIKNIEEKVKKLEQLLTDPEVLKDPSKIQSIAKEHKDLSEILSLYNQYEKVNF 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ +I D ++R+LA++E+ +++E+ ELE +I LPKD +D+K+ ILEIR Sbjct: 61 QIEEVKQLINSTTED-DLRELAELELEELKQELSELEKKIELAFLPKDPNDEKNVILEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GTGG EAALF +LFRMY+RYA WK EVLS D GG KE++A I G+G +SR+K Sbjct: 120 QGTGGEEAALFAAELFRMYQRYAERHGWKTEVLSIHPTDRGGVKEVIALIKGKGAYSRLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVP TE+SGR+HTS ATVAVLPEA E+D++I ED++I+TMRA G+GGQHV Sbjct: 180 YESGVHRVQRVPETESSGRIHTSTATVAVLPEAEEVDIEIKPEDLKIETMRAGGAGGQHV 239 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V E+SQ QN+L+AM++LRARL D + + + RK Q Sbjct: 240 NTTDSAVRITHLPTGIVVQCQDERSQLQNKLKAMQILRARLKDYYDRLEREKIAKERKEQ 299 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+G+RSE+IRTYNF Q R+TDHR+N T Y++ +L G +D+II L+ + + Sbjct: 300 VGTGERSEKIRTYNFPQNRVTDHRVNYTSYRINDILDGDLDEIIEVLIAKENEEKLAKLE 359 >gi|283956995|ref|ZP_06374467.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 1336] gi|283791496|gb|EFC30293.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 1336] Length = 355 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKILEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|251771816|gb|EES52391.1| peptide chain release factor 1 [Leptospirillum ferrodiazotrophum] Length = 362 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 234/353 (66%), Gaps = 8/353 (2%) Query: 8 QICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++RF E+ +M+ D Y KL + A ++P++ + + ++E+++L Sbjct: 14 RLQSMRDRFDELSGKMASPEIARSPDLYRKLAMDQAELAPVVELYDQWKRLRKEQEELDL 73 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D ++ +L E + + + E + +LPKD D+++ +EIRAG GG E Sbjct: 74 I----RDDPQMAELVSGEDRRLREVLEGTELRLVDAILPKDQRDERNLFIEIRAGAGGEE 129 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +L RMY R+ + ++ EV+ S++ D GG KE + + GR FSR+K+ESGVHR Sbjct: 130 AALFAAELGRMYLRFVERQGFRAEVMESNETDIGGSKEFIIYVQGRNAFSRLKYESGVHR 189 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GR+HTS TVA+LPEA+E++VDI +D+RIDT +SG+GGQ VNTT SAV Sbjct: 190 VQRVPVTEAGGRIHTSTVTVAILPEASEVEVDIEQKDLRIDTFCSSGAGGQSVNTTYSAV 249 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIP+GI+V E+SQ +NR +AM VLR+RL + E R E ++ RK +GSGDRS Sbjct: 250 RITHIPSGIVVSCQDERSQLKNRTKAMSVLRSRLLEQEVSRQNQEIASQRKTLVGSGDRS 309 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRI LTLY+L+ V++G ++ +++ L +A+ I + S Sbjct: 310 ERIRTYNFPQNRVTDHRIGLTLYQLDRVMEGELEPLVDALRAHDRAEEIKNIS 362 >gi|320109111|ref|YP_004184701.1| peptide chain release factor 1 [Terriglobus saanensis SP1PR4] gi|319927632|gb|ADV84707.1| peptide chain release factor 1 [Terriglobus saanensis SP1PR4] Length = 355 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 166/352 (47%), Positives = 238/352 (67%), Gaps = 8/352 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+E +++ V Y K + + + +I K + + D H Sbjct: 3 DRLQQMEVRYQELESELAQPEIVQDQPRYQKAMKAHRDLEILIEKFREFKEVMNGIADAH 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ D +++++A+ E+ + E+E E+ +LLPKD +D K+ +LEIRAGTGG Sbjct: 63 TMLA----DPDMKEMAEEELSTLMPRKTEIEEELKIMLLPKDPNDSKNVVLEIRAGTGGD 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF ++FRMY R+A +WKVEVLS + GG KE+ A G V+S++K+ESGVH Sbjct: 119 EAALFAEEMFRMYLRFAEQHRWKVEVLSEREGAVGGMKEVTAIFEGDQVYSQLKYESGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSA TVAVLPEA E+DV I +D+RIDT +SG GGQ VNTT SA Sbjct: 179 RVQRVPATETQGRVHTSAITVAVLPEAEEVDVKIEAKDLRIDTFCSSGPGGQSVNTTYSA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PT +V EKSQ +NR +AM+VLR+RLY+VE +R+ ++ RK Q+GSGDR Sbjct: 239 IRITHLPTNTVVSCQDEKSQIKNREKAMRVLRSRLYEVEMERVHQLQATARKAQVGSGDR 298 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SE+IRTYNF Q R+TDHRI LTL++LEYV++G + +++ L+ A+ + + Sbjct: 299 SEKIRTYNFPQNRLTDHRIGLTLHQLEYVMEGKLQPVVDALIAEDIAQRLKA 350 >gi|227873770|ref|ZP_03991999.1| peptide chain release factor RF1 [Oribacterium sinus F0268] gi|227840386|gb|EEJ50787.1| peptide chain release factor RF1 [Oribacterium sinus F0268] Length = 358 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 162/355 (45%), Positives = 240/355 (67%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++K + EI ++ V Y KL E ++ PI + + +Q E++ Sbjct: 3 ENLEEVKKHYEEIMHNLTIPEVVSDISQYKKLILEQTSLEPIYKAYLAFRKAEQSEEEAL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ D+ D EI ++A+ E+ +++ L EI LLLPKD +DDK+ ++EIR G GG Sbjct: 63 SLL-DNEKDKEILEMAKEELQQAKEDQERLTKEIQLLLLPKDENDDKNIVMEIRGGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G L+RMY YA R WK E++S ++ GG KE+V + G G +SR+K+ESGVH Sbjct: 122 EAALFAGSLYRMYTSYAEKRGWKTELVSFNETGLGGLKEVVFIVDGHGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVAV+PE ++ V+I D+R++ R+SG+GGQH+N T SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAVMPEVEDVQVEINPADVRMEVFRSSGAGGQHINKTSSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H PTG++ E+SQ QNR +AM++LRARLY++E ++ +E +A ++ Q+G+GDR Sbjct: 242 VRLIHEPTGLVAECQEERSQVQNREKAMRLLRARLYEIELEKQQSENAAEKRSQLGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTLY ++ VL G +D +I+PL+T QA+ + E Sbjct: 302 SEKIRTYNFPQGRVTDHRIKLTLYNIDAVLSGDLDLLIDPLITEDQAEKLARLEE 356 >gi|148244818|ref|YP_001219512.1| peptide chain release factor 1 [Candidatus Vesicomyosocius okutanii HA] gi|166223616|sp|A5CW65|RF1_VESOH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146326645|dbj|BAF61788.1| peptide chain release factor RF-1 [Candidatus Vesicomyosocius okutanii HA] Length = 361 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 242/361 (67%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E+ + +S+ V + KL+ EYA ++P+ + Y + Sbjct: 1 MNSSILAKLEQLSIRLEEVSIMLSDPEVVSNVKKFTKLSIEYAQLTPVNQQFQTYLSHLK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D ++ + D EI+ +A+ E+L +K + +L+ ++ +LPKD +D ++ I+EIR Sbjct: 61 NLEDAQLILFE--DDMEIKTMAKEEILNTKKILSQLDLKLKKSILPKDPNDSRNIIIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDLF++Y RY+ +KW +E++SSS + GG+KEI+A ISG V+S++K Sbjct: 119 AGTGGDEASIFSGDLFKIYSRYSEKQKWTIEIISSSIGEHGGFKEIIARISGINVYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE I+ D+RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPTTESQGRIHTSACTVAIMPEVENIEEINININDVRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITH+PTG +V +SQH+N+ +AM VL +R+ D +++ ++S+ RK Sbjct: 239 VNKTDSAVRITHLPTGTVVECQDGRSQHKNKAQAMSVLASRILDAQQQEQQEQQSSTRKE 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYN+ QGRITDHRINLTLYKL +++G + II PL+ Q + Sbjct: 299 LIGSGDRSQRIRTYNYPQGRITDHRINLTLYKLTEIMEGNLSAIIKPLIIEQQTNQLTEL 358 Query: 356 S 356 + Sbjct: 359 N 359 >gi|171057271|ref|YP_001789620.1| peptide chain release factor 1 [Leptothrix cholodnii SP-6] gi|238689096|sp|B1XYX1|RF1_LEPCP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|170774716|gb|ACB32855.1| peptide chain release factor 1 [Leptothrix cholodnii SP-6] Length = 360 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 237/361 (65%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +Q+ R AEI+ +++ + L E+A +S ++ + Y+Q++Q Sbjct: 1 MTPFLRQQLSRQALRLAEIDAALADPKVCSQIGTLRSLNREHARVSALVDRWQRYEQREQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + E+ +LA+ E+ A + ++ L++E+ L+P+D DDD++ +EIR Sbjct: 61 DLAGAQELL----DEPEMAELARAEIGAAQADLDRLDSELLTALMPRDADDDRNAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF DL RMY R+A R WK E++S S +D GGYK++V I G VF +K Sbjct: 117 AGTGGEESALFAADLARMYLRHAERRGWKTELMSESVSDLGGYKDVVLHIIGDAVFEALK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 +ESG HRVQRVPATEA GR+HTSA TVAVL +V + ++RIDT RASG+GGQH Sbjct: 177 YESGGHRVQRVPATEAQGRIHTSACTVAVLAEADEAEEVSLNPAELRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+TH+PTG++ ++SQH+N+ RA+ VL ARL D R+ A + +A RK Sbjct: 237 INKTDSAVRVTHLPTGLVAECQDDRSQHRNKARALAVLAARLRDRVRQEQAAKDAAARKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL VL+G +D++I L AH A+ + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLGAVLEGDLDEVIGALQAAHAAEQLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|270157830|ref|ZP_06186487.1| peptide chain release factor 1 [Legionella longbeachae D-4968] gi|269989855|gb|EEZ96109.1| peptide chain release factor 1 [Legionella longbeachae D-4968] Length = 351 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 165/350 (47%), Positives = 241/350 (68%), Gaps = 7/350 (2%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R+ E+ +SE+ + + L++EYA + PI + Y + K L ++ Sbjct: 1 MLERYQEVGRLLSEASVIADQNQFKTLSKEYAQLEPIATCYETYIEAKDNVSSLEELLA- 59 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E+ +A E+ + ++++ EL+ ++ + L+PKD DD+++ LEIRAGTGG EAA+F Sbjct: 60 -GEDKELAAMADEELASAKRQVEELDEQLQWHLIPKDPDDERNIYLEIRAGTGGDEAAIF 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 GDL+RMY RYA + W+ E++S+S + GGYKEI+ ISG V+S++KFESG HRVQRV Sbjct: 119 AGDLYRMYIRYAEEQGWQQELISASHGEHGGYKEIITRISGNAVYSQLKFESGAHRVQRV 178 Query: 189 PATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 P TE+ GRVHTSA TVA+LPE E D+ I +D+RIDT R+SG+GGQHVN TDSA+RIT Sbjct: 179 PETESQGRVHTSACTVAILPEVDEIDDIQINPDDLRIDTYRSSGAGGQHVNKTDSAIRIT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V E+SQH+NR +AM +L+ RL D E+ + E++ RK +G+GDRSERI Sbjct: 239 HIPTGVVVECQDERSQHKNRSKAMSLLKTRLLDAEQSKQRKEQAQTRKSLVGTGDRSERI 298 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RTYN+ QGR+TDHRINLT+Y+L V++G + ++ PL + A+++ Sbjct: 299 RTYNYPQGRLTDHRINLTIYQLNDVMEGKLSLVVEPLKREYHAELLAELG 348 >gi|227431146|ref|ZP_03913202.1| peptide chain release factor RF1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227353098|gb|EEJ43268.1| peptide chain release factor RF1 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 356 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 146/359 (40%), Positives = 226/359 (62%), Gaps = 9/359 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 Q + + + + E+ ++++ ++ Y+KL++E I + + Y Q Q+ Sbjct: 1 MDPIFQSLQTVIDHYDELNEQLADPEVMNNGQHYMKLSKEAGEIRQTVEVYTRYKQVIQD 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 Q ++G D+E+ LA+ ++ A++ E +LE ++ L+LPKD +DDK+ I+EIR Sbjct: 61 IQVAEELLG----DAEMAPLAKEDLSALKPEKEQLEEQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA + W + ++ S + GGYKE+ I+G V+S++KF Sbjct: 117 AAGGDESSLFAADLLDMYRRYAERQNWSMSIIDQSTTEVGGYKEVAIMITGGNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVPATE GRVHTS ATV V+PE EID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPATETQGRVHTSTATVGVMPEFEEIDFELNESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTGIMV E++Q +NR +A K+L +R+YD ++ +E +A RK + Sbjct: 237 KVSTAVRLIHKPTGIMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNESEYAAQRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G + ++I+ L+ A Q + + Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELGEVIDALVIADQTAKLAELN 355 >gi|223039191|ref|ZP_03609481.1| peptide chain release factor 1 [Campylobacter rectus RM3267] gi|222879552|gb|EEF14643.1| peptide chain release factor 1 [Campylobacter rectus RM3267] Length = 355 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 242/356 (67%), Gaps = 9/356 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ E+ +S+ + KL++E + + I S Y Q + + Sbjct: 1 MLADKLQPFLDRYDELSRLLSDPSITSDIANMTKLSKEQSNLEDIASAAKSYLQTLADIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D+E+ +LA+ E+ +E + LE EI LLLPKD +DDK+ LEIRAGT Sbjct: 61 ENKALL----DDAELGELAKDELKNLESQKENLEEEIKILLLPKDPNDDKNVFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDLF Y RYA LR +K E++S S+ + GG+KEI+ I G+G +SR+KFE Sbjct: 117 GGDEAALFAGDLFNAYARYAELRGYKFEIVSQSEGNTGGFKEIILLIKGKGAYSRLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE + +++I D+RID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDLRIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+VT KSQH+N+ AMKVL+ARLY+++ + + ++ RK Q+G+ Sbjct: 237 DSAVRITHIPTGIVVTNQDGKSQHKNKEAAMKVLKARLYEIQEEERVAKETSERKSQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 GDRS RIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+ +QA+ I Sbjct: 297 GDRSGRIRTYNFPQNRISDHRINLTLYRLDAIMAAGLFDEIIEPLIAHYQAEAISE 352 >gi|83816205|ref|YP_445488.1| peptide chain release factor 1 [Salinibacter ruber DSM 13855] gi|294507374|ref|YP_003571432.1| peptide chain release factor 1 [Salinibacter ruber M8] gi|119361602|sp|Q2S2U3|RF1_SALRD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83757599|gb|ABC45712.1| peptide chain release factor 1 [Salinibacter ruber DSM 13855] gi|294343702|emb|CBH24480.1| peptide chain release factor 1 [Salinibacter ruber M8] Length = 357 Score = 267 bits (681), Expect = 2e-69, Method: Composition-based stats. Identities = 153/359 (42%), Positives = 236/359 (65%), Gaps = 8/359 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 + +++ +K+RF E+E M++ + +L +E++ + ++ I Y++ E Sbjct: 1 MIEREKLDKVKHRFQEVESLMADPEVANDPDRMRELGQEHSRLEEVVEAIDRYERLLDER 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +L +I D + E+ LA+ E+ +E ++ +E ++ L+PKD +++K+ I+EIRAG Sbjct: 61 DELEGMIRDESG--EMEALAKEELEQLETKLPAVEEDLKQKLIPKDPEEEKNAIVEIRAG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LF GDLFR+Y +YA + W E++ +S GG++E++ + G V+ +K+E Sbjct: 119 AGGDEASLFAGDLFRLYTQYAKQQGWTYELIDASPGTQGGFREVIFAVKGEDVYGTLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +GVHRVQRVP TE+SGR+HTSAATVAVLPEA E+DVDI D+ I+T +A+G GGQ VNT Sbjct: 179 AGVHRVQRVPETESSGRIHTSAATVAVLPEAEEVDVDINPSDLTIETFKATGPGGQSVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRI H P+G+ V EKSQH+NR +AM+VLR+R+Y+ +R+ ER R+ +G Sbjct: 239 TDSAVRIKHAPSGVEVSCQDEKSQHKNRSKAMRVLRSRVYEKKREEQQAEREEARRSMVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRI--NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SGDRS +IRTYNF Q R+TDHR+ + L+ ++ G ID II+ L A+ + + Sbjct: 299 SGDRSAKIRTYNFPQDRVTDHRLEGGQKNHSLQPIMDGEIDPIIDALRAEEHAEKLANL 357 >gi|315023545|gb|EFT36549.1| Peptide chain release factor 1 [Riemerella anatipestifer RA-YM] Length = 362 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 226/361 (62%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ +K R+ E+ + + + + L +EY+ + I+ Y Sbjct: 1 MSKSLIPKLEAIKQRYNEVADLIIQPDVISDQKRYSSLNKEYSDLGKIVRVFDEYSTALN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ +I D SD ++ DLA++E I +E E+ YLL+PKD DDK+ ++E+R Sbjct: 61 AIKEADEIIAD-GSDKDLVDLAKMEKQEAIDRIPSIEEELKYLLIPKDPADDKNVMVELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+A+FV D++RMY Y + WK EV S+ GYKE++ + G GV+ MK Sbjct: 120 AGTGGDESAIFVEDVYRMYTMYFKSKGWKHEVTD-SNEASKGYKELIMRVEGDGVYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVP TE+ GRVHTSA TVAVLPEA E+DV+I DI + T R+ G+GGQ+V Sbjct: 179 FESGVHRVQRVPETESQGRVHTSAITVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N ++ V++TH PTGI+V +SQ NR AM++LR +LYD+E +++ + +A RK Sbjct: 239 NKVETKVQLTHKPTGIVVVCQQARSQLANRELAMEMLRTKLYDIELQKVQGDIAAQRKTM 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + +GDRS +IRTYN+ QGR+TDHRIN ++Y L+ + G I ++++ L+ A A+ + Sbjct: 299 VSTGDRSAKIRTYNYPQGRVTDHRINKSIYNLDNFMNGDIQEMLDALIMAENAEKMKGEE 358 Query: 357 E 357 E Sbjct: 359 E 359 >gi|258544629|ref|ZP_05704863.1| peptide chain release factor 1 [Cardiobacterium hominis ATCC 15826] gi|258520137|gb|EEV88996.1| peptide chain release factor 1 [Cardiobacterium hominis ATCC 15826] Length = 360 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 239/355 (67%), Gaps = 9/355 (2%) Query: 6 HKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ L+ R+ E+ ++ D + +E+A ++P+I+ + + +++ DL Sbjct: 6 REKLASLRERYDELNGLLALPETAADPDQLRRYAQEHAQLAPVIAILDDTEALERQLADL 65 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + +D E+ +LA E A+E +I E+++ ++PKD D LEIRAGTGG Sbjct: 66 ADL----ETDPEMAELAAAERPALEAQIAANEHQLARHMIPKDPLDGADIYLEIRAGTGG 121 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAA+F GDLFRMY +YA + WK+E+LS + + GGYKEI++ ISG V+S +K+ESG Sbjct: 122 DEAAIFAGDLFRMYGKYAEQKNWKIEILSENPGEHGGYKEIISQISGNNVYSTLKYESGA 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTSAATVA+LP ++I D+++DT RASG+GGQHVN TD Sbjct: 182 HRVQRVPETESGGRIHTSAATVAILPVGDDIQPIEINPADLKVDTYRASGAGGQHVNKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITH+P+GI+V E+SQH+NR +AM++L ARL DVER + NE++A RK +GSG Sbjct: 242 SAIRITHLPSGIVVECQEERSQHKNRAKAMRLLAARLLDVERTKAQNEQAAERKSLVGSG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYN+ Q R+TDHRINLTLY L +L+G +D II PL +A + Sbjct: 302 DRSERIRTYNYPQSRVTDHRINLTLYSLADILEGGLDAIITPLQQEQEANALLDL 356 >gi|78187994|ref|YP_378332.1| peptide chain release factor 1 [Chlorobium chlorochromatii CaD3] gi|119361520|sp|Q3AUE2|RF1_CHLCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78170193|gb|ABB27289.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium chlorochromatii CaD3] Length = 357 Score = 267 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 153/355 (43%), Positives = 232/355 (65%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K + ++E +S+ + + KL EY+ + ++ Y +K E + Sbjct: 1 MLDKLQAIKEKHLDLEQALSDPSLANDQERFRKLNREYSNLREVVQAFDAYQRKATELEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ SD+E++ LA+ EV +++ + ELE + LLLPK+ D ++ I+EIRAGTG Sbjct: 61 AQHLLA-TESDTEMKALAEAEVDELQETVAELEQGLKILLLPKEEADSRNVIIEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFES 180 G EA+LF DL RMY+RYA + W+ +VL +++ GG+KE++ ISG VF MK+ES Sbjct: 120 GDEASLFAADLTRMYQRYAEQKGWQYKVLDYNESSVPGGFKEMILEISGNNVFGTMKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSA +VAVLPEA E+DV+I +D+R DT R+ G GGQ+VN Sbjct: 180 GVHRVQRVPDTEAQGRIHTSAVSVAVLPEAEEVDVEIRRDDLRFDTYRSGGKGGQNVNKV 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVRITH+PTGI+ E+SQ QN+ RAM++LR +LYD++ +R+ R+ + + Sbjct: 240 ETAVRITHMPTGIVAACQEERSQLQNKERAMQMLRTKLYDIQLAEQQQQRADLRRTMVAT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRS +IRTYN+ Q R+TDHRI T + L ++QG + ++I L+ QA+ + S Sbjct: 300 GDRSAKIRTYNYPQSRVTDHRIGFTSHALPQIMQGELHEVIEALIMHDQAERLKS 354 >gi|42518855|ref|NP_964785.1| peptide chain release factor 1 [Lactobacillus johnsonii NCC 533] gi|227889713|ref|ZP_04007518.1| peptide chain release factor 1 [Lactobacillus johnsonii ATCC 33200] gi|268319749|ref|YP_003293405.1| Peptide chain release factor 1 (RF-1) [Lactobacillus johnsonii FI9785] gi|61214647|sp|Q74K25|RF1_LACJO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|41583141|gb|AAS08751.1| peptide chain release factor 1 [Lactobacillus johnsonii NCC 533] gi|227849577|gb|EEJ59663.1| peptide chain release factor 1 [Lactobacillus johnsonii ATCC 33200] gi|262398124|emb|CAX67138.1| Peptide chain release factor 1 (RF-1) [Lactobacillus johnsonii FI9785] gi|329667598|gb|AEB93546.1| peptide chain release factor 1 [Lactobacillus johnsonii DPC 6026] Length = 362 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 242/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y +E D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADMREVVQKYRKYKSDIKEIDDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I SD+++ ++A+ E +EKE+ ELE+EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-TESDNDLVEMAKEENSELEKEVAELEDEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAETQGWKVSLIDSEPTEVGGYKRVAVMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRVPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNRDQYDAKRKESVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+IIN L+ +Q + + +E Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEIINALVLYYQTQQLEKMAE 359 >gi|322434298|ref|YP_004216510.1| peptide chain release factor 1 [Acidobacterium sp. MP5ACTX9] gi|321162025|gb|ADW67730.1| peptide chain release factor 1 [Acidobacterium sp. MP5ACTX9] Length = 358 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 154/352 (43%), Positives = 230/352 (65%), Gaps = 7/352 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ + MS+ + + +E+ + PI+ K Y + + Sbjct: 3 DRLAQMEVRYDSLSRDMSDPVLVNDQKKFQAIAKEHRLMEPIVEKYRQYRKVADGIAEAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD +++++A+ E+ ++E ++ + + +LLPKD +DDK+ ++E+RAGTGG Sbjct: 63 AMLSE--SDPDLKEMAKEELASLEPQLEPIAEALKVMLLPKDPNDDKNIVIELRAGTGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGV 182 EAALFV ++FR+Y R A +WKV+VLS S + G G K++ A G V+S+MK+ESGV Sbjct: 121 EAALFVAEMFRVYLRLAEQHRWKVQVLSESFSGIGNGLKDVTAIFEGDRVYSQMKYESGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE GRVHTSA TVAVLPEA E+D+ I +D+R+DT +SG GGQ VNTT S Sbjct: 181 HRVQRVPATETQGRVHTSAITVAVLPEAEEVDIKIEAKDLRVDTFCSSGPGGQSVNTTYS 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH+PT +V EKSQ +NR +AM+VLR+RLY+V + + RK Q+G+GD Sbjct: 241 AIRITHLPTNTVVSCQDEKSQIKNREKAMRVLRSRLYEVAEETRHQAEAKIRKDQVGTGD 300 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 RSE+IRTYNF Q R+TDHRI LT + L V++G + I+ L+ A+ + Sbjct: 301 RSEKIRTYNFPQNRLTDHRIGLTNHNLNMVMEGQLQPTIDALIAHDIAEKMK 352 >gi|237740336|ref|ZP_04570817.1| peptide chain release factor 1 [Fusobacterium sp. 2_1_31] gi|229422353|gb|EEO37400.1| peptide chain release factor 1 [Fusobacterium sp. 2_1_31] Length = 357 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 163/356 (45%), Positives = 240/356 (67%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYEELNQMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D +++++ E+ E+++ LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 ESFK-TEKDPDMKEMLNEELKEAEEKLPSLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + G KE+ TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELNGLKEVAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVTVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|237753220|ref|ZP_04583700.1| peptide chain release factor 1 [Helicobacter winghamensis ATCC BAA-430] gi|229375487|gb|EEO25578.1| peptide chain release factor 1 [Helicobacter winghamensis ATCC BAA-430] Length = 356 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 171/354 (48%), Positives = 242/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ R+ EI + + ++ +L++E + + ++ K Y Q ++ Sbjct: 5 KLQPFIKRYDEISTLLVDPNILNDIKRITELSKEQSDLEELVEKARAYLNNLQSIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+ DLA+ E+ E + +LE EI LLLPKD +DDK+ LE+RAGTGG E Sbjct: 65 LL----DDKELGDLAKEEIKETETQNVKLEAEIKVLLLPKDPNDDKNIYLELRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +FVGDLFR Y RYA L+ WKVE++SSS+N GGYKEI+A + G+G +SR+K+E G HR Sbjct: 121 AGIFVGDLFRAYVRYADLKGWKVEIISSSENSVGGYKEIIALVKGKGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTSA TVA++PE +++V I D+RI+ RA G GGQ VNTTDSAV Sbjct: 181 VQRVPATESQGRVHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI V+ EKSQH+N+ +AMK+L+AR+Y+ E + + + RK Q+GSGDRS Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKAMKILKARIYEAELEAQMEQNAEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R+TDHR+ LTLY LE ++ G +D +I+P++ QA+ + ++ Sbjct: 301 ERIRTYNYPQNRLTDHRVGLTLYSLEEIMLSGNLDSVIDPIVAYFQAEALQNSG 354 >gi|227892680|ref|ZP_04010485.1| peptide chain release factor RF1 [Lactobacillus ultunensis DSM 16047] gi|227865551|gb|EEJ72972.1| peptide chain release factor RF1 [Lactobacillus ultunensis DSM 16047] Length = 362 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y Q K+E +D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKQDKKELEDNKK 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I +SD ++ ++A+ E IEKEI +LE +I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-GDSDPDLVEMAKEENSEIEKEIPKLEEQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQGWKVSLIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|71275264|ref|ZP_00651551.1| Peptide chain release factor 1 [Xylella fastidiosa Dixon] gi|170731262|ref|YP_001776695.1| peptide chain release factor 1 [Xylella fastidiosa M12] gi|238687964|sp|B0U5Z3|RF1_XYLFM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71164073|gb|EAO13788.1| Peptide chain release factor 1 [Xylella fastidiosa Dixon] gi|167966055|gb|ACA13065.1| peptide chain release factor 1 [Xylella fastidiosa M12] Length = 361 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 173/362 (47%), Positives = 246/362 (67%), Gaps = 10/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+E +S+ D + + E A ++PI + ++ + K Sbjct: 1 MKPTLRRKLEALAERHEELERLLSDPKIASDTDRFRTYSRELAQLAPIATTLAEETRTKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + T+ +D E+R+LA+ E+ + + L+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLAAAETL----RTDPEMRELAEQEIAIAQAHLTTLDEQLQRLLIPQDPRDECNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F G+LFRMY RYA ++WKVEV S + + GGYKEI+A I GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGNLFRMYTRYAERQRWKVEVESDTPGEHGGYKEIIARIVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA EI D++IDT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+PTG++V + +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHLPTGVVVESQTERSQHANRDKAMKRLKAQLIESERSQQATAEAMTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTYNF QGRITDHR+ NLTLY L +++G +D +I+ L HQA+ + Sbjct: 297 QVGSGDRSQRIRTYNFPQGRITDHRVENLTLYDLPNIIEGDLDPLIDRLRQEHQAEELAR 356 Query: 355 AS 356 S Sbjct: 357 LS 358 >gi|162147699|ref|YP_001602160.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus PAl 5] gi|209542323|ref|YP_002274552.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus PAl 5] gi|189039975|sp|A9HJ50|RF1_GLUDA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|161786276|emb|CAP55858.1| putative peptide chain release factor 1 [Gluconacetobacter diazotrophicus PAl 5] gi|209530000|gb|ACI49937.1| peptide chain release factor 1 [Gluconacetobacter diazotrophicus PAl 5] Length = 352 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 241/355 (67%), Gaps = 5/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ + R E++ ++E +A+ K + EYA + PI+ +I +QEE+ Sbjct: 1 MGLDDRLDRIVARSEELQAALAEGLVGEAFAKASREYAELEPIVDRIGELRLAEQEERQS 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D E+R+LA+ E+ + I L +I +LP+D D++S ILEIR GG Sbjct: 61 QALLA----DPEMRELAEAELEDLRARIPVLRQDIRIAMLPRDEADERSAILEIRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +LF Y RYAALR W+ E++ +++ GG +E +A I+GRGVF+R+K+ESGV Sbjct: 117 DEAALFAAELFDAYRRYAALRGWRFEIMEFDESELGGLREGIANITGRGVFARLKYESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GR+HTS TVAVLPEA ++DV I D+RID RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATESQGRIHTSTVTVAVLPEAGDVDVQINDGDLRIDVYRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG++V EKSQH+NR +AMK+L ARLY+ ER R+A+RK Q+G+GD Sbjct: 237 AVRITHLPTGLVVAMQEEKSQHKNRAKAMKILMARLYERERAAAHATRAADRKSQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHRINLT YK++ V+ G D+ ++ L QA ++ + Sbjct: 297 RSERIRTYNFPQGRVTDHRINLTAYKIDRVMMGEFDEFVDALTQDEQASLLAAEG 351 >gi|86149291|ref|ZP_01067522.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CF93-6] gi|218563201|ref|YP_002344981.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|20139359|sp|Q9PM63|RF1_CAMJE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|85840073|gb|EAQ57331.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CF93-6] gi|112360908|emb|CAL35709.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284926807|gb|ADC29159.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni IA3902] gi|315927641|gb|EFV06972.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315929077|gb|EFV08310.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 305] Length = 355 Score = 266 bits (680), Expect = 3e-69, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|194335257|ref|YP_002017051.1| peptide chain release factor 1 [Pelodictyon phaeoclathratiforme BU-1] gi|238693362|sp|B4SAR5|RF1_PELPB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194307734|gb|ACF42434.1| peptide chain release factor 1 [Pelodictyon phaeoclathratiforme BU-1] Length = 357 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 232/355 (65%), Gaps = 6/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K + ++E +S+ + + KL +EY+ + I+ +Y K E + Sbjct: 1 MLDKLQSIKEKHLDLEQLLSDPNAAADQVRFRKLNKEYSDLREIVQAYDLYAATKTELDE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ SD+E+++L Q E+ ++K++ ELE ++ LLLPK+ D ++ I+EIRAGTG Sbjct: 61 SRQLLK-SESDAEMKELVQAEISELQKKLPELEQQLKILLLPKEEADSRNVIIEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFES 180 G EAALF DL RMY+RYA + W+ E L +++ GG++EI +++G V+ MK+ES Sbjct: 120 GEEAALFAADLTRMYQRYAEHQGWQCETLHFNESSVPGGFREITLSVNGHDVYGTMKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSA +VAVLPEA E+DV+I ED+R DT R+ G GGQ+VN Sbjct: 180 GVHRVQRVPDTETQGRIHTSAVSVAVLPEAEEVDVEIRREDLRFDTYRSGGKGGQNVNKV 239 Query: 241 DSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVRITH+PTGI+ ++SQ QN+ RAM++LR +LYD++ +R+ R+ + + Sbjct: 240 ETAVRITHMPTGIVSACQEQRSQLQNKERAMQMLRTKLYDIQLAEQQQQRADLRRSMVTT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRS +IRTYN+ Q R+TDHRI T + L +LQG + DIIN L QA + + Sbjct: 300 GDRSAKIRTYNYPQSRVTDHRIAFTSHALPQILQGDLQDIINALKMHDQAARLQA 354 >gi|152991659|ref|YP_001357380.1| peptide chain release factor 1 [Sulfurovum sp. NBC37-1] gi|166223612|sp|A6Q6B4|RF1_SULNB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151423520|dbj|BAF71023.1| peptide chain release factor 1 [Sulfurovum sp. NBC37-1] Length = 355 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 170/358 (47%), Positives = 249/358 (69%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ +R+ EI +S ++ +L++E + ++P++ K ++Y + Sbjct: 1 MFKEKLQPFIDRYNEISELLSSPDIASDINRMTELSKEQSGLAPLVEKANLYIETADAIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ SD E+ DLA+ E+ +E + +LE EI L++PKD +DDK+ LE+RAG Sbjct: 61 ENKELL----SDEELGDLAKEELSELEPMLPKLEEEIKILMIPKDKNDDKNIFLELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG E+ALFV D+FRMY RYA WKVE++S++D GGYKE++A I G+GV+S++K+E+ Sbjct: 117 GGDESALFVADVFRMYSRYAEQMGWKVEIVSTNDGTAGGYKELIAEIKGQGVYSQLKYEA 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE GRVHTSA TVAV+PE +++VDI ++++D R+SG GGQ VNTT Sbjct: 177 GTHRVQRVPDTETQGRVHTSAITVAVIPEVDDVEVDIKPNEVKMDVYRSSGCGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTGI+V EKSQH+NR +AMKVL+AR+Y+ E ++ +E + RKLQ+GS Sbjct: 237 DSAVRLTHIPTGIVVAIQDEKSQHKNRDKAMKVLKARVYESELQKQLDETAGQRKLQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSE+IRTYN+ Q R+TDHRI LTLY L+ V+ G + +I+PL+ Q + I A Sbjct: 297 GDRSEKIRTYNYPQNRLTDHRIGLTLYALDDVMNNGNLKLVIDPLIAHAQTEAIQEAG 354 >gi|88608013|ref|YP_506293.1| peptide chain release factor 1 [Neorickettsia sennetsu str. Miyayama] gi|119361566|sp|Q2GE03|RF1_NEOSM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|88600182|gb|ABD45650.1| peptide chain release factor 1 [Neorickettsia sennetsu str. Miyayama] Length = 367 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 182/352 (51%), Positives = 250/352 (71%), Gaps = 4/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ NR + R+ ++ + KL++EYA + P + I+ Y + K+E+ L ++ Sbjct: 8 LEEILNRHTYLADRLRCPEAIASQEFSKLSKEYAELKPKVELIARYKKLKEEQAYLELLV 67 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D EIR++ + ++ AI+ I +LE EI +LLPKD DD + +LE+RAGTGG EAA Sbjct: 68 KNPLEDQEIREIGKSDLQAIQDVIPKLELEIKRMLLPKDKDDALNVMLEVRAGTGGDEAA 127 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF LF MY++YA KW+ E++S S N+ GGYKE A+ISG VF+++KFESGVHRVQ Sbjct: 128 LFAASLFHMYQKYAERMKWRFEIISISHNEIGGYKEANASISGSDVFAKLKFESGVHRVQ 187 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE++GR+HTS ATVAVLPE ++DV I +D+RID R+SG GGQ VNTTDSAVRI Sbjct: 188 RVPETESAGRIHTSTATVAVLPEPEDVDVKINDKDLRIDVYRSSGPGGQSVNTTDSAVRI 247 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V EKSQH+NR +AMKVLR RLY++ER ++ E S+ RK QIGSG+RSE+ Sbjct: 248 THIPTGIVVIQQDEKSQHKNRAKAMKVLRVRLYEIERNKVQQEISSMRKSQIGSGERSEK 307 Query: 306 IRTYNFSQGRITDHRINLTLYKLEY-VLQGYIDDIINPLLTAHQAKMIGSAS 356 RTYNF QGRITDHRINLT Y++ V +G ++ II L+ ++A+M+ Sbjct: 308 TRTYNFPQGRITDHRINLTTYRINETVKEGELEPIIEALIRENEARMLAGVE 359 >gi|257461132|ref|ZP_05626230.1| peptide chain release factor 1 [Campylobacter gracilis RM3268] gi|257441506|gb|EEV16651.1| peptide chain release factor 1 [Campylobacter gracilis RM3268] Length = 355 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 171/358 (47%), Positives = 242/358 (67%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ E+ +S+ + L++E +I PI S Y + + + Sbjct: 1 MLADKLKPFLDRYDELSRMLSDPAITADIANMTALSKEQRSIEPIKEAASEYLKILNQIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ SD+++ +LA+ E+ +E + +LE +I LLLPKD +DDK+ LEIRAGT Sbjct: 61 ENKALL----SDADLGELAKEELKNLETQKPQLEEKIKILLLPKDPNDDKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDL Y RYA LR +K E++S+S+ GGYKE++ + G G +SR+KFE Sbjct: 117 GGDEAALFAGDLLGAYLRYADLRGYKCEIVSTSEGSVGGYKEVILLVKGAGAYSRLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVAV+PE + ++ I D+RID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAITVAVMPEIEDSEIQINPNDLRIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTG++VT K QH+N+ AMKVL+ARLYD++ + + +RK Q+G+ Sbjct: 237 DSAVRITHIPTGLVVTNQDGKDQHKNKEAAMKVLKARLYDMQEQERLEKERKDRKDQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RI+DHRINLTLY+L+ ++ G + D+II+PL+ QA+ I +A Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLDAIMAGGLFDEIIDPLIAHSQAEAIANAG 354 >gi|291166475|gb|EFE28521.1| peptide chain release factor 1 [Filifactor alocis ATCC 35896] Length = 354 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 163/352 (46%), Positives = 243/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + L+ ++ E+ +++ +D + +E + PII K + Q + + + Sbjct: 3 DNLKALEEKYEELNKIVADPSTMNDMDKWKAYMKEISDTEPIIQKYREFKQTRDDIEGSK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + + E+ + +++NE+ LL+PKD +D+K+ I+EIR G GG Sbjct: 63 QILEEEKDEELRELAKME-LSEKEELMEKVQNELKLLLIPKDPNDEKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G LFRMY YA+ R WKVE++S+++ GGYKE+V I+G+G +SR+K+ESGVH Sbjct: 122 EAALFAGVLFRMYSMYASARNWKVEMMSANETGIGGYKEVVFMITGKGAYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS +TVAVLPE +++V++ + D+R+D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESSGRIHTSTSTVAVLPEVDDVEVELDMNDVRVDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH PTGI+++ EKSQ +N+ +A K+L+A+LYD+E ++ E + RK Q+GSGDR Sbjct: 242 VRLTHKPTGIVISMQDEKSQLKNKEKAFKILKAKLYDLELEKAQKELAQERKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SERIRTYN+ QGR+TDHRI LTLYKLE L G ID+I++ L+T QA+ + S Sbjct: 302 SERIRTYNYPQGRVTDHRIGLTLYKLENFLNGDIDEILDALITTDQAEKLQS 353 >gi|282877960|ref|ZP_06286769.1| peptide chain release factor 1 [Prevotella buccalis ATCC 35310] gi|281299961|gb|EFA92321.1| peptide chain release factor 1 [Prevotella buccalis ATCC 35310] Length = 370 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 141/359 (39%), Positives = 216/359 (60%), Gaps = 13/359 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ RF E+ ++ + Y+KLT+EY + I+ Y ++ Sbjct: 10 KLEGLEARFEEVSTLITAPDVIADQPRYVKLTKEYKDLGDIMDIRKRYIACLNAIRESKD 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D++++++A+ E+ A E +LE EI L+PKD +D K+ +EIRAGTGG E Sbjct: 70 ILA-NETDADMKEMAREELQANEDMQPQLEEEIKLALVPKDPEDAKNVQMEIRAGTGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLF MY+ Y + W + V S ++ GGYKEI +SG V+ +K+ESGVHR Sbjct: 129 AALFAGDLFNMYKHYCDSKGWTLSVTSVNEGSVGGYKEIDFAVSGDNVYGTLKYESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GR+HTSAATVAVLPEA + +V+I DI+ DT R+SG+GGQ+VN +S V Sbjct: 189 VQRVPATETQGRMHTSAATVAVLPEADQFEVNINEGDIKWDTFRSSGAGGQNVNKVESGV 248 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ + ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 249 RLRYPWKNPNTGEVEEILIECTETRDQPKNKERALSRLRTFIYDREHQKYIDDIANRRKS 308 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRI T + L+ + G I +I+ L A+ + Sbjct: 309 LVSTGDRSAKIRTYNYPQGRVTDHRIGYTTHDLQGFVNGDIQAMIDALTVEENAEKLKE 367 >gi|205355626|ref|ZP_03222396.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CG8421] gi|205346403|gb|EDZ33036.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni CG8421] Length = 355 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 173/354 (48%), Positives = 242/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDIINDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAG GG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGAGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRSYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|304440460|ref|ZP_07400349.1| peptide chain release factor RF1 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371212|gb|EFM24829.1| peptide chain release factor RF1 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 355 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 245/353 (69%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I ++R+ E+E + ++ Y K E+A + PI+ K Y + +++ Sbjct: 3 ENIQVFEDRYVELEKDLVNVDVINNSALYQKTAIEHAELEPIVHKYREYKKLEEDLSGNK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++ L + ++ IE+E+ ++ E+ LL+PKD +D+K+ I+EIRAG GG Sbjct: 63 ELLTEDLDD-DMLQLVKDDIKNIEQELEKVTEELKRLLVPKDPNDNKNVIVEIRAGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF G L R Y YA +K +++S+++ GGYKE+V I G+G +S++K+ESGVH Sbjct: 122 EAALFAGVLLRQYLMYAEKCGFKTDIMSTNEIGIGGYKEVVFMIEGKGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+SGR+HTS ATVAVLPEA +++++I DIR+D R+SG+GGQ VNTTDSA Sbjct: 182 RVQRVPETESSGRIHTSTATVAVLPEAEDVEIEIDPSDIRVDVFRSSGNGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI++ EKSQ +N+ +AMK+L+ +LYD+E ++ A E SA ++ QIGSGDR Sbjct: 242 VRITHLPTGIVISCQDEKSQLKNKEKAMKILKTKLYDLELQKQAQELSAEKRSQIGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ QGR+TDHRI LT ++++ + G +D+II+ L ++AK I + Sbjct: 302 SERIRTYNYPQGRVTDHRIGLTSHRIDAINNGDLDEIIDALTQYYEAKKIENM 354 >gi|189499090|ref|YP_001958560.1| peptide chain release factor 1 [Chlorobium phaeobacteroides BS1] gi|189494531|gb|ACE03079.1| peptide chain release factor 1 [Chlorobium phaeobacteroides BS1] Length = 357 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 151/357 (42%), Positives = 234/357 (65%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ LK+++ +E ++S+ + + KL +EY+ + I+ Y K + ++ Sbjct: 1 MLEKLEALKDKYLRLEEQLSDPEIIADQKRFRKLNKEYSDLKEIVQGYDRYKSNKVQIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + ++ +D E++ LA +E+ +++ EL+ ++ LLLPK+ D ++ I+EIRAGTG Sbjct: 61 VRKMLKQE-TDPEMKSLALVELEELQELQPELDQQLKLLLLPKEEADSRNVIIEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG-YKEIVATISGRGVFSRMKFES 180 G EAALF DL RMY+++A + WK +++ ++ G KE + +ISG V++ MKFES Sbjct: 120 GDEAALFATDLLRMYQKFAERKGWKCDMMEFNEASIPGACKEAILSISGHDVYATMKFES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAA+VAVLPEA ++D++I +D+++DT R+ G GGQ+VN Sbjct: 180 GVHRVQRVPETETQGRIHTSAASVAVLPEAEDVDIEIRKDDLQLDTFRSGGKGGQNVNKV 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVRITH P+GI+V E+SQ QNR RAMK+LRA+LYD + ER+ R+ + + Sbjct: 240 ETAVRITHTPSGIVVACQEERSQLQNRERAMKMLRAKLYDQQLAEKNRERADLRRSMVTT 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRS +IRTYNF Q R+TDHRI T + L +L+G +DDII L Q + + + Sbjct: 300 GDRSAKIRTYNFPQSRVTDHRIGYTSHALPQILEGNLDDIIEALKLHDQTARLQAEA 356 >gi|226226590|ref|YP_002760696.1| peptide chain release factor 1 [Gemmatimonas aurantiaca T-27] gi|226089781|dbj|BAH38226.1| peptide chain release factor 1 [Gemmatimonas aurantiaca T-27] Length = 356 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 232/358 (64%), Gaps = 6/358 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQ 57 M+ ++ + R E+E +++ + +L E+ ++ ++++ + + +Q Sbjct: 1 MLSHLRDRMAEALQRAIEVEQLLADPETTKDAPRLAELGREHHRLAQVVARATRLQKAEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E + + D + A+ E++ +E+E LE E+ LL+P+D D++ I+EIR Sbjct: 61 ELNEARELAN--GDDPDFAAEARTEMVRLEEETAVLEKELLPLLIPRDPLDERPAIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA LF GDL RMY R+ R W++E +S S+ GG KE V +SG GVF ++ Sbjct: 119 AGTGGDEAGLFAGDLLRMYTRFLERRGWRIEPISYSEGTLGGVKESVFKVSGDGVFGVLR 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESGVHRVQRVPATE+ GR+HTSAATVAVLPEA E+D+ I +D+RID R+SG GGQ V Sbjct: 179 WESGVHRVQRVPATESQGRIHTSAATVAVLPEAEELDMRIEDKDLRIDVFRSSGPGGQSV 238 Query: 238 NTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITHIPTGI+V+ +KSQ QN+ +AM VLRARL D+ ERS RK Q Sbjct: 239 NTTDSAVRITHIPTGIVVSQQDQKSQLQNKAKAMDVLRARLLDLRLSEQEAERSRMRKSQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYNF QGR+TDHR+ LTLY ++ V+ G I ++ L A+ + + + Sbjct: 299 VSTGDRSAKIRTYNFPQGRVTDHRVGLTLYDIDSVMNGEISSFLDALALANAEEKLSA 356 >gi|149925825|ref|ZP_01914089.1| peptide chain release factor 1 [Limnobacter sp. MED105] gi|149825942|gb|EDM85150.1| peptide chain release factor 1 [Limnobacter sp. MED105] Length = 360 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 166/359 (46%), Positives = 243/359 (67%), Gaps = 9/359 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R A++E +S + + + +T E + + P + + Y + Sbjct: 1 MKDSMRNRLTRLAERLADLEEFLSSQNAANDMAQFKAITRERSELLPATERFAEYLSIEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + SD ++RD+A+ E+ E ++ +LE ++ LLLPKD +D ++ +LEIR Sbjct: 61 DLNTAQEWL----SDPDMRDMAREEIAQNEAKLAQLEADLQRLLLPKDPNDHRNAMLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDLFRMY RYA + W++EV+S+S+++ GGYKE++ ++G V+ +K Sbjct: 117 AGTGGDESALFAGDLFRMYTRYAERQGWQIEVMSASESELGGYKEVIIRLAGDHVYKHLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSA TVAV+ E E + ++I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATESQGRIHTSACTVAVMAEPDEAEVIEINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITH+PTG++V E+SQH+N+ +AMKVL RL D + ++ R+ Sbjct: 237 INKTDSAVRITHLPTGLVVECQDERSQHKNKAKAMKVLNVRLQDKIDRERQAAEASERRS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+Y++ G + D++N L H+A+++ Sbjct: 297 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDYIMDGDLTDLMNGLTAFHEAELLAE 355 >gi|307722037|ref|YP_003893177.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurimonas autotrophica DSM 16294] gi|306980130|gb|ADN10165.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurimonas autotrophica DSM 16294] Length = 355 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 177/358 (49%), Positives = 252/358 (70%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ NR+ E+ +S + +L++E +++ PI+ K Y +E Sbjct: 1 MLADKLTPFINRYNELSEMLSSPDITSDIKRMTELSKEQSSLLPIVEKTKEYKALIEEIS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ SD E+ D+A+ E+ +E ++ +E EI LLLPKD +DD++ I+E+RAG Sbjct: 61 DSKEML----SDPEMGDMAKEELKELEPQVPLIEEEIKMLLLPKDPNDDRNIIVELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+FVGDLF Y RYA L+ WK+E++SSS +D GGYKE+VA I G V+SR+K+E Sbjct: 117 GGDEAAIFVGDLFDAYTRYADLKGWKIELMSSSPSDAGGYKEVVALIKGEQVYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVAV+PE +++++I D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPQTESQGRVHTSAITVAVMPEVDDVEIEINENDLKIDVMRSSGCGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++VT +KSQH+NR +AMKVL+ARLYD++ + E +A R Q+G+ Sbjct: 237 DSAVRITHLPSGLVVTNQDQKSQHKNREKAMKVLKARLYDLQMQEAQAEDAAQRAAQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RI+DHRINLTLY+L ++ G +D+II PL+ HQAK++ +A Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLNEIMSGGLLDEIIEPLIADHQAKIVEAAG 354 >gi|296111565|ref|YP_003621947.1| peptide chain release factor 1 [Leuconostoc kimchii IMSNU 11154] gi|295833097|gb|ADG40978.1| peptide chain release factor 1 [Leuconostoc kimchii IMSNU 11154] Length = 357 Score = 266 bits (679), Expect = 4e-69, Method: Composition-based stats. Identities = 141/359 (39%), Positives = 218/359 (60%), Gaps = 9/359 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQE 58 + + + +R+ E+ ++++ K L +E + ++ + Y Q QE Sbjct: 1 MDPIFKSLQTVVDRYDELNEQLADPEVAGDGQKYMALLKEAGEMRDTVAAYTRYKQVIQE 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 QD ++ D E+ LA+ ++ + E +LE ++ L+LPKD +DDK+ I+EIR Sbjct: 61 IQDAEDML----DDDELAPLAKEDLNTLRPEKSDLEAQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA ++W + ++ + + GGYKE+ ISG V+S++KF Sbjct: 117 AAGGDESSLFAADLLDMYRRYAEKQRWALSIIDETTTEVGGYKEVAIMISGDNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP+TE GRVHTS ATV V+PE EID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPSTETQGRVHTSTATVGVMPEFEEIDFELAESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTG+MV E++Q +NR +A K+L +R+YD ++ E + RK + Sbjct: 237 KVSTAVRLVHKPTGMMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNEAEYAEKRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G + +II+ + A Q + + Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGDLGEIIDAFVIADQTAKLAELN 355 >gi|262277608|ref|ZP_06055401.1| peptide chain release factor 1 [alpha proteobacterium HIMB114] gi|262224711|gb|EEY75170.1| peptide chain release factor 1 [alpha proteobacterium HIMB114] Length = 355 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 178/355 (50%), Positives = 262/355 (73%), Gaps = 3/355 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 L ++ ++ +R+ +E +S++ + Y+K ++EY++I II + Y + ++++ Sbjct: 1 MLPINKVKEIISRYETLEKTLSQTDIDKNTYVKNSKEYSSIGDIIIDVKNYIKMVEDKEG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++D E++++A++E+ I+++I +LE +I +LPKD D+K+ I+EIRAGTG Sbjct: 61 SEKILEDKSADKELKEMAELELNEIKEKIGDLETKIKIFMLPKDEADEKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF GDLF MY++ A+ WK E++S SD+D GGYKE+V +++G+ VFS++KFESG Sbjct: 121 GLEASLFAGDLFEMYQKVASNNGWKTEIISISDSDAGGYKEVVFSVTGKNVFSKLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA ++DV I ++RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRVPKTETQGRVHTSAATVAVLPEAEDVDVKIDENELRIDVFRSSGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIP+GI+V+ + KSQH+N+ +A+K+LR++LY++ER ++ ERS+ RK QIGSG Sbjct: 241 SAVRITHIPSGIVVSQQDEKSQHKNKAKALKILRSKLYELERSKLEKERSSARKSQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF QGR+TDHRINLTL+KL L G +I + L Q + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLSDFLSGDVFSEISDALQIQFQEQQLEN 355 >gi|315038002|ref|YP_004031570.1| peptide chain release factor 1 [Lactobacillus amylovorus GRL 1112] gi|312276135|gb|ADQ58775.1| peptide chain release factor 1 [Lactobacillus amylovorus GRL 1112] gi|327183282|gb|AEA31729.1| peptide chain release factor 1 [Lactobacillus amylovorus GRL 1118] Length = 362 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y Q K+E +D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKQDKKELEDNKK 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + SD ++ ++A+ E IEKEI ELE++I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIA-NESDEDLIEMAKEENSEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQGWKVSLIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|124515209|gb|EAY56720.1| Peptide chain release factor 1 [Leptospirillum rubarum] Length = 361 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 231/353 (65%), Gaps = 8/353 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ R+ EI +M++ Y+KL + + +S I+S Y + +++DL Sbjct: 13 RLESMRERYREISGKMADPEVSRNPAIYMKLARDQSELSAIVSLYEHYLRIIDQQKDLQE 72 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D E DL E + E++++E+ + +LP+D D ++ LEIRAG GG E Sbjct: 73 L----RQDPEFLDLVPQEEKKLSLELQDVESRLLDSILPRDERDSRNLFLEIRAGAGGEE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +L RMY R+ + ++ EV+ ++D + GG +E + + G G FS++KFESGVHR Sbjct: 129 AALFARELARMYLRFIERKGFRFEVMETNDTEIGGARETIIYVQGHGAFSQLKFESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GR+HTS TVA++PEA+E+DV I +D+RIDT AS +GGQ VNTT SAV Sbjct: 189 VQRVPVTEAGGRIHTSTVTVAMIPEASEVDVQIDPKDLRIDTFCASSAGGQSVNTTYSAV 248 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT I+V E+SQ +N+ +AMKVLRARL + E+ R + +++RK Q+G+GDRS Sbjct: 249 RITHLPTNIVVSCQDERSQLKNKAKAMKVLRARLMEKEQTRQNEQIASDRKSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRI +TLY+L+ V++G ID ++ L +A I Sbjct: 309 ERIRTYNFPQNRVTDHRIGMTLYQLDQVMEGNIDPFVDALRAQERALEIERLE 361 >gi|262068281|ref|ZP_06027893.1| peptide chain release factor 1 [Fusobacterium periodonticum ATCC 33693] gi|291378019|gb|EFE85537.1| peptide chain release factor 1 [Fusobacterium periodonticum ATCC 33693] Length = 357 Score = 266 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 164/356 (46%), Positives = 240/356 (67%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYEELNQILVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D +++++ E+ E+++ LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 ESFK-TEKDPDMKEMLNEELKEAEEKLPSLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA RKWK+E++ D + G KE+ TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERRKWKIEIIEKQDGELNGLKEVAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE + +V + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDVQEVIVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|323143931|ref|ZP_08078589.1| peptide chain release factor 1 [Succinatimonas hippei YIT 12066] gi|322416295|gb|EFY06971.1| peptide chain release factor 1 [Succinatimonas hippei YIT 12066] Length = 364 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 167/361 (46%), Positives = 240/361 (66%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+E +S+ + + + +L EY+ + +++ Y + Sbjct: 1 MQESIIRKLESLCERHQEVEQLLSQPEIIADQEKFRELNREYSRLQVMVNTFQDYKRAAD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +++ ++ D +++ +AQ E+ +++ LE+E+ LLLP D DD +C LEIR Sbjct: 61 DLEEMQAML--EGDDEDMKAMAQEELEPTKEKAAALEHELQLLLLPHDDRDDCNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF G+L+RMY +Y + W++EV+S S+ + GGYKEI+A +SG G + MK Sbjct: 119 AGTGGDEAALFAGELYRMYAKYCEAKGWQLEVVSQSEGEVGGYKEIIAKLSGEGAYGYMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GRVHTSA TV VLPE ++ D+RIDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRVHTSACTVMVLPEIPPSKAPEVNPADLRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSA+RITHIPTGI+V E+SQH+NR RAM+VL +RL +E + E++ R Sbjct: 239 INKTDSAIRITHIPTGIVVECQDERSQHRNRERAMEVLLSRLAKMEEDKRLAEQTEARHS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRS+RIRTYNF Q R+TDHRINLTLY+L VL+G +D I+ P++ +QA+ + Sbjct: 299 ILSSGDRSDRIRTYNFPQSRVTDHRINLTLYRLSEVLEGNLDLILKPVIEEYQAEQLSEM 358 Query: 356 S 356 + Sbjct: 359 A 359 >gi|163846084|ref|YP_001634128.1| peptide chain release factor 1 [Chloroflexus aurantiacus J-10-fl] gi|222523819|ref|YP_002568289.1| peptide chain release factor 1 [Chloroflexus sp. Y-400-fl] gi|189039962|sp|A9WE79|RF1_CHLAA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790872|sp|B9LJ02|RF1_CHLSY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|163667373|gb|ABY33739.1| peptide chain release factor 1 [Chloroflexus aurantiacus J-10-fl] gi|222447698|gb|ACM51964.1| peptide chain release factor 1 [Chloroflexus sp. Y-400-fl] Length = 360 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 161/357 (45%), Positives = 219/357 (61%), Gaps = 9/357 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ E+ M++ + E I I++ Y ++ ++ Sbjct: 3 DKLAAVAARYDELTELMAQPEVATNVTLLQQYAREQREIEDIVNAYREYQATQRAIEEAE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D SD E+R LAQ E+ K + LE ++ LLLP+D +D K I+EIR G GG Sbjct: 63 AMLED--SDPELRALAQEELETQRKRLASLEEQLKLLLLPRDPNDSKDVIMEIRQGEGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY R+A R WKVEV S ++N GG KE++ I G G +S++K+E GVH Sbjct: 121 EAALFAADLFRMYTRFAESRGWKVEVDSLTENGIGGIKEVIFQIHGEGAYSQLKYEGGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS ATVAVLPE E +++I ED+RID R++G GGQ VNTTDSA Sbjct: 181 RVQRVPATEARGRIHTSTATVAVLPEVEETEIEIKPEDLRIDVFRSAGHGGQGVNTTDSA 240 Query: 244 VRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 VRI + P ++ +SQ QNR RAM VLRARLY E+++ E A+R Q+GS Sbjct: 241 VRIVYKPGTPEEIVVTCQDGRSQIQNRERAMTVLRARLYAREQEKRQREIGASRLAQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+R+E+IRTYNF Q RITDHRI L VL G +D II L+ A+ + ++ Sbjct: 301 GERAEKIRTYNFPQDRITDHRIGQNFSNLPAVLDGELDKIIEALIIYDNAERLRASG 357 >gi|206603661|gb|EDZ40141.1| Peptide chain release factor 1 [Leptospirillum sp. Group II '5-way CG'] Length = 361 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 156/353 (44%), Positives = 231/353 (65%), Gaps = 8/353 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ R+ EI +M++ Y+KL + + +S I+S Y + +++DL Sbjct: 13 RLESMRERYREISGKMADPEVSRNPAIYMKLARDQSELSIIVSLYENYLRIIDQQKDLQE 72 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + DL E + E++++E+ + +LP+D D ++ LEIRAG GG E Sbjct: 73 L----RQDPDFLDLVPQEEKKLSLELQDVESRLLDSILPRDERDSRNLFLEIRAGAGGEE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +L RMY R+ + ++ EV+ ++D + GG +E + + G G FS++KFESGVHR Sbjct: 129 AALFARELARMYLRFIERKGFRFEVMETNDTEIGGARETIIYVQGHGAFSQLKFESGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GR+HTS TVA++PEA+E+DV I +D+RIDT AS +GGQ VNTT SAV Sbjct: 189 VQRVPVTEAGGRIHTSTVTVAMIPEASEVDVQIDPKDLRIDTFCASSAGGQSVNTTYSAV 248 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT I+V E+SQ +N+ +AMKVLRARL + E+ R + +++RK Q+G+GDRS Sbjct: 249 RITHLPTNIVVSCQDERSQLKNKAKAMKVLRARLMEKEQTRQNEQIASDRKSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRI +TLY+L+ V++G ID ++ L +A I Sbjct: 309 ERIRTYNFPQNRVTDHRIGMTLYQLDQVMEGNIDPFVDALRAQERALEIERLE 361 >gi|332877766|ref|ZP_08445507.1| peptide chain release factor 1 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684346|gb|EGJ57202.1| peptide chain release factor 1 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 357 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 228/354 (64%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF EI + + + YI+L +EY + ++ K Y + Sbjct: 1 MLDKLNIVKQRFDEISDLIIQPDIIADQKRYIQLNKEYKDLKELMDKREEYITVTGNLSE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD E+ ++A++++ ++ + +LE EI Y+L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIIAD-GSDPEMVEMAKLQLEESKERLPQLEEEIKYMLIPKDPEDAKNAVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y + W V+ ++ GGYKEI+ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYCQSKGWSTSVMDFNEGTAGGYKEIIFEVTGDNVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV++ + D++I ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVIVLPEAEEFDVELDMADVKIIRTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+++ HIPTGI V EKSQH+N +A+KVLR+RLY++E + SA RK + SG Sbjct: 240 SAIQLQHIPTGIEVRCQDEKSQHKNLDKALKVLRSRLYEMELAKKMEADSARRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS +IRTYN+ QGR+TDHRI LTLY L+ V+ G + +I+ L A A+ + Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNVINGDVQRLIDELQLAENAEKLKE 353 >gi|224373415|ref|YP_002607787.1| peptide chain release factor 1 [Nautilia profundicola AmH] gi|254790893|sp|B9L5Z9|RF1_NAUPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|223590043|gb|ACM93779.1| peptide chain release factor 1 [Nautilia profundicola AmH] Length = 355 Score = 265 bits (678), Expect = 5e-69, Method: Composition-based stats. Identities = 168/358 (46%), Positives = 241/358 (67%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ ++ EI +S + KL+ E ++ PI+ K Y+ + Sbjct: 1 MLLDKLKPFVEKYNEINQMLSSPEITQDIKRMTKLSREARSLEPIVEKAKEYENIINTIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D E+ +LA+ E+ E+++ ELE EI LLLPKD +DDK+ LEIRAGT Sbjct: 61 EAKMML----DDPEMAELAKEELKEAEEKLPELEEEIKILLLPKDPNDDKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVGDL + Y RYA + WKVE++S S +D GGYKEI+ I G V+SR+K+E Sbjct: 117 GGDEAALFVGDLLKAYLRYADNKGWKVEIVSESKSDAGGYKEIILLIKGESVYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+PATE+ GR+HTSA TVA++PE ++D+++ +DI+I+ MRA G+GGQHVN T Sbjct: 177 GTHRVQRIPATESQGRIHTSAVTVAIMPEVDDVDIELDPKDIKIEVMRAGGAGGQHVNKT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVR+THIPTGI V+ E+SQ +N+ +AM++L+AR+++ RK Q+GS Sbjct: 237 ESAVRMTHIPTGITVSMQDERSQQRNKEKAMQILKARVFEKLENERLAAIGEARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ Q RITDHRI LTLY+LE ++ +G D+II+PL+ +QA+ + A Sbjct: 297 GDRSERIRTYNYPQNRITDHRIGLTLYRLEQIMSEGLFDEIIDPLIAHYQAEALKEAG 354 >gi|28199883|ref|NP_780197.1| peptide chain release factor 1 [Xylella fastidiosa Temecula1] gi|71899967|ref|ZP_00682113.1| Peptide chain release factor 1 [Xylella fastidiosa Ann-1] gi|182682635|ref|YP_001830795.1| peptide chain release factor 1 [Xylella fastidiosa M23] gi|32129935|sp|Q87A17|RF1_XYLFT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238691124|sp|B2IA85|RF1_XYLF2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|28058004|gb|AAO29846.1| peptide chain release factor 1 [Xylella fastidiosa Temecula1] gi|71730254|gb|EAO32339.1| Peptide chain release factor 1 [Xylella fastidiosa Ann-1] gi|182632745|gb|ACB93521.1| peptide chain release factor 1 [Xylella fastidiosa M23] gi|307578915|gb|ADN62884.1| peptide chain release factor 1 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 361 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 172/362 (47%), Positives = 246/362 (67%), Gaps = 10/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+E +S+ D + + E A ++PI + ++ + K Sbjct: 1 MKPTLRRKLEALAERHEELERLLSDPKIASDTDRFRTYSRELAQLAPIATTLAEETRTKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + T+ +D E+R+LA+ E+ + + L+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLAAAETL----RTDPEMRELAEQEIAIAQAHLTTLDEQLQRLLIPQDPRDECNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F G+LFRMY RYA ++WKVEV S + + GGYKEI+A I GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGNLFRMYTRYAERQRWKVEVESDTPGEHGGYKEIIARIVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA EI D++IDT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+PTG++V + +E+SQH NR +AMK L+A+L + +R + A + RKL Sbjct: 237 VNKTESAIRITHLPTGVVVESQTERSQHANRDKAMKRLKAQLIESQRSQQATAEAMTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTYNF QGRITDHR+ NLTLY L +++G +D +I+ L HQA+ + Sbjct: 297 QVGSGDRSQRIRTYNFPQGRITDHRVENLTLYDLPNIIEGDLDPLIDRLRQEHQAEELAR 356 Query: 355 AS 356 S Sbjct: 357 LS 358 >gi|325956455|ref|YP_004291867.1| peptide chain release factor 1 [Lactobacillus acidophilus 30SC] gi|325333020|gb|ADZ06928.1| peptide chain release factor 1 [Lactobacillus acidophilus 30SC] Length = 362 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y Q K+E +D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKQDKKELEDNKK 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + SD ++ ++A+ E IEKEI ELE++I L+LPKD +DDK I+EI GG E Sbjct: 67 IIA-NESDEDLIEMAKEENSEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIHGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQGWKVSLIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|88596258|ref|ZP_01099495.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 84-25] gi|88191099|gb|EAQ95071.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 84-25] Length = 355 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFFKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEPIVLKAKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLIKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|319957818|ref|YP_004169081.1| bacterial peptide chain release factor 1 (brf-1) [Nitratifractor salsuginis DSM 16511] gi|319420222|gb|ADV47332.1| bacterial peptide chain release factor 1 (bRF-1) [Nitratifractor salsuginis DSM 16511] Length = 355 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 170/358 (47%), Positives = 248/358 (69%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ +R+ EI +S V +L++E ++I+P++ K Y + + + Sbjct: 1 MFKEKLQPFIDRYEEINRLLSSPEIAADVKKMTELSKEQSSIAPLVEKAQKYLEISEAIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ SD E +LA+ E+ +E ++ LE EI L++PKD +DDK+ LE+RAG Sbjct: 61 ENKAML----SDPEFGELAKEELSELEPQLPRLEEEIKVLMIPKDPNDDKNIYLELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG E+ALFV D+F+MY R+A + WKVE++SSS+ GGYKE++A + G GV+S++KFE+ Sbjct: 117 GGDESALFVEDMFKMYLRFAERQGWKVEIVSSSEGTAGGYKELIALVKGEGVYSKLKFEA 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE GRVHTSA TVAV+PE ++++DI +I++D R+SG GGQ VNTT Sbjct: 177 GTHRVQRVPATETQGRVHTSAITVAVIPEVEDVEIDIKPNEIKMDVYRSSGCGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+TH+PTGI+V EKSQH+NR +AMKVL+AR+++ + E + RKLQ+GS Sbjct: 237 DSAVRLTHLPTGIVVAIQDEKSQHKNRDKAMKVLKARVHEAMMREQMEETAGQRKLQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSE+IRTYN+ Q RITDHRI LTLY L+ V+ G ++ +I+PL+ QA+ I A Sbjct: 297 GDRSEKIRTYNYPQNRITDHRIGLTLYALDDVMNNGTLEQVIDPLIAHAQAEAIQEAG 354 >gi|222823061|ref|YP_002574634.1| peptide chain release factor 1 [Campylobacter lari RM2100] gi|254790870|sp|B9KE98|RF1_CAMLR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|222538282|gb|ACM63383.1| peptide chain release factor 1 [Campylobacter lari RM2100] Length = 355 Score = 265 bits (678), Expect = 6e-69, Method: Composition-based stats. Identities = 172/358 (48%), Positives = 242/358 (67%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSE---SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ RF E+ +S+ S + L++E + PI+ K Y + + + Sbjct: 1 MLADKLKPFLTRFDELNTLLSDVNISNDISKMTALSKEQKNLEPIVEKAKEYLKTLDDIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ SD E+ +LA+ E+ +E LE E+ LLLPKD +DDK+ LEIRAGT Sbjct: 61 ENKLLL----SDPELGELAKEELKNLELLKPNLEEELKILLLPKDPNDDKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LFVGDL + Y RYA R +K E++SSS+ GG+KEI+ I G G +SR+K+E Sbjct: 117 GGDEASLFVGDLVKAYIRYAENRDYKYEIVSSSEGSVGGFKEIIILIKGNGAYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE ++++ I D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAITVAIMPEVDDVEIQINPNDLKIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI+V KSQH+N+ AMKVL+ARL++++ + + S RK Q+GS Sbjct: 237 DSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLFEMQEQERLAKESEARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF Q RI+DHRINLTLY+L+ +L+G + D+I+ PL+ +QA+ + + Sbjct: 297 GDRSERIRTYNFPQNRISDHRINLTLYRLDAILEGGLFDEIVEPLIAYYQAEALKQEN 354 >gi|309791603|ref|ZP_07686096.1| peptide chain release factor 1 [Oscillochloris trichoides DG6] gi|308226321|gb|EFO80056.1| peptide chain release factor 1 [Oscillochloris trichoides DG6] Length = 360 Score = 265 bits (677), Expect = 6e-69, Method: Composition-based stats. Identities = 155/357 (43%), Positives = 223/357 (62%), Gaps = 8/357 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ + R+ E+ M++ V+ + E + +++ Y + +Q ++ H Sbjct: 3 DKLQSVVARYDELGELMAQPEVVNNLSLLQQYAREQRELEEVVNAFQAYQRARQAAEEAH 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ + +SD+E+R+LA E+ + I +LE EI LLLP+D +D K I+EIR G GG Sbjct: 63 TMLNE-SSDAEMRELAHEELESQRTRIAQLEEEIKLLLLPRDPNDAKDVIIEIRQGEGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL+RMY RYA LR WKVEV S +DN GG+KE V I G +S++K+E GVH Sbjct: 122 EAALFAADLYRMYVRYAELRGWKVEVDSITDNGIGGFKEAVFEIRGENAYSQLKYEGGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GR+HTS ATVAV+PE ++I ED+R D R+ G GGQ VNTTDSA Sbjct: 182 RVQRVPATEARGRIHTSTATVAVMPEVEPTVIEIKDEDVRTDVFRSGGHGGQGVNTTDSA 241 Query: 244 VRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 VR+ + ++ +SQ +NR +AM VLRA+LY E+++ + A+R Q+G+ Sbjct: 242 VRLVYRGGTPDEIVVTCQDGRSQIKNREKAMSVLRAKLYAREQEKQQRAQGASRLAQVGT 301 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G+R+E+IRTYNF Q RITDHRI L VL G +D II+ L+ A+ + ++ Sbjct: 302 GERAEKIRTYNFPQDRITDHRIGQNFSNLPGVLAGNLDKIIDALIVYDNAERLQASG 358 >gi|313678949|ref|YP_004056688.1| bacterial peptide chain release factor 1 (brf-1) [Oceanithermus profundus DSM 14977] gi|313151664|gb|ADR35515.1| bacterial peptide chain release factor 1 (bRF-1) [Oceanithermus profundus DSM 14977] Length = 358 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 153/356 (42%), Positives = 224/356 (62%), Gaps = 8/356 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L+ + +E + + + + + + YA + +I Y + + E + Sbjct: 1 MLDKLKKLEEEYRALERELGDPEVLADAARFREKSRRYAELGEVIEAFRAYRRVQDELEQ 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ ++A+ E +E+++ ELE ++ LLLP+D D ++ I+EIRAGTG Sbjct: 61 ARELAA----DPELGEMAREEAAELEEKLGELEKKLELLLLPRDPADVRNAIVEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF G+LF MY RYA ++VE+L S D GG+ ++ + G G + K+ESG Sbjct: 117 GQEAALFAGNLFEMYTRYAERLGYQVEMLESHPTDLGGFSKVSFMVKGPGAYGTFKYESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS ATVAVLPEA E DV++ + ++RID MRASG GGQ VNTTD Sbjct: 177 VHRVQRVPATETQGRIHTSTATVAVLPEAEESDVELDMSEVRIDVMRASGPGGQGVNTTD 236 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H PTGI++T +SQ +NR +A+ +LR+RL +++R +R QIG+G Sbjct: 237 SAVRVVHEPTGIIITIQDSRSQIKNREKALSILRSRLLEMKRAEEEAALRTSRLAQIGTG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYNF Q R+TDHRI+ T + LE VL G +D++ L A Q +M+ S Sbjct: 297 ERSEKIRTYNFPQSRVTDHRIHFTTHNLEGVLAGELDELTEALKKADQERMLEELS 352 >gi|241895238|ref|ZP_04782534.1| peptide chain release factor 1 [Weissella paramesenteroides ATCC 33313] gi|241871544|gb|EER75295.1| peptide chain release factor 1 [Weissella paramesenteroides ATCC 33313] Length = 361 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 151/353 (42%), Positives = 234/353 (66%), Gaps = 4/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + +R+ E+ +S+ + ++ L++E ++ + Y Q ++ Sbjct: 6 EKVQSVVDRYEEVSEMISDPEVIADTKRFLALSKEEGSLRETVETFKHYKQVVVGIEENE 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +DSE+ +LA+ E+ + E LE++I LLLPKD +DDK+ I+EI GG Sbjct: 66 EILREEANDSELEELAKEELKDLRVEKEALEDQIKILLLPKDPNDDKNIIMEIHGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E ALF DL+ MY RYA + W+VE++ + + GGYKEIV I+G V+S++KFE+G H Sbjct: 126 EGALFAADLYDMYVRYAEKQGWQVEIIDENKTEIGGYKEIVLMITGNNVYSKLKFENGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE++GRVHTS ATV V+PE ++D++I +D+R+D R+SG+GGQH+N T SA Sbjct: 186 RVQRVPETESAGRVHTSTATVGVMPEYEDVDIEIADKDLRVDVYRSSGAGGQHINKTSSA 245 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V ++SQ QNR +AM++L+AR+YD + E + RK +G+GDR Sbjct: 246 VRMTHLPTGIVVAMQDQRSQQQNRAKAMEILKARVYDYYASQNEAEYAEQRKTAVGTGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI L+L KL+ ++ G + D+I+ LL A Q + + Sbjct: 306 SERIRTYNYPQNRVTDHRIGLSLNKLDRIMNGELSDVIDALLIADQTAKLEAL 358 >gi|328957995|ref|YP_004375381.1| peptide chain release factor 1 [Carnobacterium sp. 17-4] gi|328674319|gb|AEB30365.1| peptide chain release factor 1 [Carnobacterium sp. 17-4] Length = 358 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 237/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ +S+ V KLT+E AAI ++ Y + Q+ D Sbjct: 3 DRLESVEGRYEELNELLSDPEVVSDTKRLMKLTKEEAAIRETVATYRRYKEVSQDISDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ DSE+ ++A+ E+ ++KE E+E ++ L+LPKD +DD++ I+EIR GG Sbjct: 63 EMLGEK-LDSEMAEMAKEELNDLKKEKTEIEEKMKILMLPKDENDDRNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF G LF MY++YA + W+ EVL ++ GGYKEI I+G V+S++K+E+G H Sbjct: 122 EAQLFAGTLFNMYQKYADAQGWRTEVLDANITGIGGYKEITLMITGDNVYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++++P +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVELNLPDKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI V E+SQ +NR +AMKVLRAR+YD ++ +E A RK +G+GDR Sbjct: 242 VRLTHLPTGIAVAMQDERSQIKNREKAMKVLRARVYDHIQQAAQSEYDAERKSAVGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNYPQSRVTDHRIGLTIQKLDQILSGKLDEIIDALILNDQTAKMEQL 354 >gi|309775307|ref|ZP_07670316.1| peptide chain release factor 1 [Erysipelotrichaceae bacterium 3_1_53] gi|308916970|gb|EFP62701.1| peptide chain release factor 1 [Erysipelotrichaceae bacterium 3_1_53] Length = 357 Score = 265 bits (677), Expect = 7e-69, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 224/356 (62%), Gaps = 6/356 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + NR+ EI M V KL E A ++ ++ + Y Sbjct: 1 MSVMIERLEGMVNRYHEINEMMMSPEIVTDSKMLAKLGREQADLTQVVETYTEYKNSVNA 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D ++ + D EI+++A++E+ +E +I E ++ LL+PKD +D + I+EIR Sbjct: 61 LDDAKALLMEE--DKEIKEMAKMEIEELEPKIEEYLGKLEILLIPKDPNDSHNAIVEIRG 118 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E +F GDL+RMY ++A + WK+E++ D + GG+ + + G GV+ ++KF Sbjct: 119 AAGGDEGNIFAGDLYRMYSKFAESQGWKIEIVEMDDCEAGGFSLVSFMVKGDGVYGKLKF 178 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP TE+ GR+HTS ATV V PE D DI + D+ ++TMRASG+GGQH+N Sbjct: 179 ESGSHRVQRVPKTESQGRIHTSTATVLVTPEIEAEDFDIDMNDLEVETMRASGAGGQHIN 238 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRI H PTGI+V +SQH+NR A+ +R+R+Y+ ++++ E+ R+ +I Sbjct: 239 KTDSAVRIVHKPTGIVVKCQDGRSQHENRATALMTIRSRVYEEHQRKLEEEQGVERRSKI 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 G+GDR+E+IRTYN+ Q R+TDHRI T+ +L+ +++G + D+++ LL+A Q + Sbjct: 299 GTGDRAEKIRTYNYPQNRVTDHRIGYTVNQLDRIMEGRMQDLLDALLSADQQAKLA 354 >gi|213962214|ref|ZP_03390478.1| peptide chain release factor 1 [Capnocytophaga sputigena Capno] gi|213955220|gb|EEB66538.1| peptide chain release factor 1 [Capnocytophaga sputigena Capno] Length = 357 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 228/354 (64%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + YI+L +EY + ++ K Y + Sbjct: 1 MLDKLNIVKQRFDEVSDLIIQPDVIADQKRYIQLNKEYKDLKELMDKREEYINVTGNLAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A++++ ++ + +LE EI Y+L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIIAD-GSDAEMVEMAKLQLDESKERLPQLEEEIKYMLIPKDPEDAKNAVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y + W V+ ++ GGYKEI+ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYCQSKGWSTSVMDFNEGTAGGYKEIIFEVTGDNVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV++ + D+ I ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVELNMADVNIIRTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+++ HIPTGI V EKSQH+N +A+KVLR+RLY++E + SA RK + SG Sbjct: 240 SAIQLQHIPTGIEVRCQDEKSQHKNLEKALKVLRSRLYELELAKKMEADSARRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS +IRTYN+ QGR+TDHRI LTLY L+ V+ G + +I+ L A A+ + Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNVINGDVQRLIDELQLAENAEKLKE 353 >gi|157165147|ref|YP_001465968.1| peptide chain release factor 1 [Campylobacter concisus 13826] gi|166223539|sp|A7ZB10|RF1_CAMC1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|112801757|gb|EAT99101.1| peptide chain release factor 1 [Campylobacter concisus 13826] Length = 355 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 174/355 (49%), Positives = 248/355 (69%), Gaps = 9/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +R+ EI +S+ ++ KL++E ++I P+ + + Y Q + ++ Sbjct: 4 DKLHPFLDRYDEISTLLSDPNIANDIEKMTKLSKEQSSIEPVATAATKYLQILNDIEENK 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D+E+ +LA+ E+ ++E +LE EI LLLPKD +DDK+ LEIRAGTGG Sbjct: 64 ALLE----DAELGELAKEELKSLEISREKLEEEIKILLLPKDPNDDKNIFLEIRAGTGGD 119 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLF Y RYA LR +K E++S S+ + GG+KEI+ I G+G +SR+KFE G H Sbjct: 120 EAALFAGDLFNAYIRYAELRGYKFEIVSQSEGNTGGFKEIIVLIKGKGAYSRLKFEGGTH 179 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTSA TVA++PE + +++I DIR+D MR+SG GGQ VNTTDSA Sbjct: 180 RVQRVPETESQGRVHTSAVTVAIMPEVEDSEIEINPNDIRVDVMRSSGHGGQSVNTTDSA 239 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++VT KSQH+N+ AMKVL+ARLY+++ + + ++ RK Q+G+GDR Sbjct: 240 VRITHIPTGLVVTNQDGKSQHKNKEAAMKVLKARLYEMQEQERLAKETSERKSQVGTGDR 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 S RIRTYN+ Q RI+DHRINLTLY+L+ ++ G D+II PL+T +QA+ + A Sbjct: 300 SGRIRTYNYPQNRISDHRINLTLYRLDAIMAAGLFDEIIEPLITHYQAEAMLEAG 354 >gi|313665080|ref|YP_004046951.1| peptide chain release factor 1 [Mycoplasma leachii PG50] gi|312949513|gb|ADR24109.1| peptide chain release factor 1 [Mycoplasma leachii PG50] Length = 363 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 154/353 (43%), Positives = 232/353 (65%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I+ + + + + +L +E A + ++ K Y + +D Sbjct: 7 EALETMQKRLFQIQKDLEDENILKDIKKFTELNKEKANLEEVVEKFVEYKKAVDHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ D+E+ +LA+IE+ ++ L+ I +LLPKD +D+K+ I+EIR GG Sbjct: 67 AIL-ENEKDTELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDEKNVIVEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASLGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LRA++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYN+ Q R+TDHRI LTL KL+ V++G ID+ I L+ Q + + Sbjct: 306 SEKIRTYNYPQNRVTDHRIGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQ 358 >gi|256390407|ref|YP_003111971.1| peptide chain release factor 1 [Catenulispora acidiphila DSM 44928] gi|256356633|gb|ACU70130.1| peptide chain release factor 1 [Catenulispora acidiphila DSM 44928] Length = 356 Score = 265 bits (677), Expect = 8e-69, Method: Composition-based stats. Identities = 154/358 (43%), Positives = 216/358 (60%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I DL +AE+ R+++ KL + YA + PI Y + + Sbjct: 5 IDDLLAEYAELGTRLADPSVHADADVARKLGKRYAELGPIAETYREYTSVSDDITAAEEL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + E + +++ LE + LL+P+D D+K+ ILEI+ G GG E+ Sbjct: 65 SAEDPAFGEE-------IPGLQERRTALEERLQKLLIPRDPMDEKNVILEIKGGEGGQES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR------GVFSRMKFE 179 LF GDL RMY R+A + WK E+L S+++D GGYK++ + GR GV++R+K+E Sbjct: 118 MLFAGDLLRMYMRFAERQHWKTEILESTESDLGGYKDVQVAVKGRVNEAGEGVWARLKYE 177 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V VLPEA +++V+I D+RID R+SG GGQ VNT Sbjct: 178 GGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEDVEVEINANDLRIDVFRSSGPGGQSVNT 237 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V +EKSQ QN+ AM++LRARL V ++ E S RK QI Sbjct: 238 TDSAVRITHLPTGVVVSCQNEKSQLQNKESAMRILRARLLAVAQEEADREASDTRKSQIR 297 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYNF + RI+DHR+ Y L+ VL G +D +I + A A + + Sbjct: 298 TMDRSERIRTYNFPENRISDHRVGYKSYNLDQVLDGDLDAVIQACVEADTAAKLAAGG 355 >gi|218283971|ref|ZP_03489832.1| hypothetical protein EUBIFOR_02428 [Eubacterium biforme DSM 3989] gi|218215488|gb|EEC89026.1| hypothetical protein EUBIFOR_02428 [Eubacterium biforme DSM 3989] Length = 358 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 145/357 (40%), Positives = 220/357 (61%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + R+ EI M +S V KL E ++PI+ Y + +E ++ Sbjct: 4 MDERLEKMVERYREINDLMMQSDVVSDRKTMAKLGREQNELTPIVETYEEYKKAVEELEE 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D EIR++AQ+E+ +E +I+ + + LL+PKD +D + ILEIR G Sbjct: 64 AKVLSKEE--DKEIREMAQMELEELEPKIQNYLDRLELLLVPKDPNDSHNAILEIRGAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E +F GDLFRMY +YA + W+ EV+ D++ GG+ + ++G G + +KFESG Sbjct: 122 GDEGNIFAGDLFRMYSKYAEAKGWRTEVIEMEDSEAGGFSLVSFKVNGEGAYGTLKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+HTS ATV +PE D DI + D+ I+TMR+SG+GGQH+N TD Sbjct: 182 SHRVQRVPKTESQGRIHTSTATVLCMPEVEAEDFDIDMNDLEIETMRSSGAGGQHINKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V +SQH+NR A+ +RAR+Y+ ++ + + R+ +IG+G Sbjct: 242 SAVRIVHKPTGIVVKCQDGRSQHENRATALMTIRARVYEERQRELDQKNEKERRTKIGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DR+E+IRTYN+ Q R+TDHRI T+ +L+ ++ G +DD++ L A Q I E Sbjct: 302 DRAEKIRTYNYPQNRVTDHRIGYTVNQLDRIMDGRLDDLMAALQLADQQAKIAGEKE 358 >gi|224541463|ref|ZP_03682002.1| hypothetical protein CATMIT_00632 [Catenibacterium mitsuokai DSM 15897] gi|224525621|gb|EEF94726.1| hypothetical protein CATMIT_00632 [Catenibacterium mitsuokai DSM 15897] Length = 358 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 148/355 (41%), Positives = 231/355 (65%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R+ E+ + + + K ++E A++ + Y ++ Sbjct: 6 ERLQTVEKRYEELTQILMDPSIANDIQKMTQASKEQASLEKAYNLYKEYKALLDGIEEAK 65 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D EI+++A++E+ +EK+ +E++I L+PKD +D+K+ ++EIR GG Sbjct: 66 ELLNE--NDPEIKEMAKMELEELEKKQPIMEHDIQIELIPKDPNDEKNVVMEIRGAAGGD 123 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E +F GDLFRMY +YA + WK+E+ + ++ GGY I I G GV+S+MKFESG H Sbjct: 124 EGNIFAGDLFRMYSKYAESQGWKIEIEDAQPSEAGGYSLISFIIKGNGVYSKMKFESGSH 183 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTS ATV V+PEA E+D+DI +D+RIDT R+SG+GGQH+N TDSA Sbjct: 184 RVQRVPKTETQGRVHTSTATVLVMPEAEEVDIDIDPKDLRIDTYRSSGAGGQHINKTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+ + +SQH NR +AM+ LR R+Y+ + + + R+ +IGSGDR Sbjct: 244 VRITHIPTGIVATSQDGRSQHDNRAKAMQSLRTRVYEAKLREEEEKLGNERRNKIGSGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +E+IRTYN+ Q R+TDHRI LT+ +L+ +++G ++ II+ L+ Q + E Sbjct: 304 AEKIRTYNYPQNRVTDHRIGLTIQQLDRIMEGKLEPIIDALINEDQRLKLLGEEE 358 >gi|149907580|ref|ZP_01896327.1| peptide chain release factor 1 [Moritella sp. PE36] gi|149809250|gb|EDM69179.1| peptide chain release factor 1 [Moritella sp. PE36] Length = 362 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 232/353 (65%), Gaps = 7/353 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R E++ + E + D Y LT+EY+ + ++S Y K+ Sbjct: 1 MKASIITKLEALIERHEEVQALLGEPEIISDQDRYRALTKEYSQLEELVSCFKEYQDAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D D ++R++A E + + + +E+ LLLP+D +D +C LEIR Sbjct: 61 DFESAEEMLKDE--DPDMREMAVEEYKESKATVARVSDELEVLLLPRDPNDSNNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDL+RMY RYA + W++ +++ S++D GGYKE++ + G VF MK Sbjct: 119 AGAGGDEAAIFAGDLYRMYSRYAEKKGWRLTIMNLSNSDQGGYKEVIVKMEGEAVFGTMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TV V+PE E+D I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPETESQGRIHTSACTVVVMPEVPEVDAIVINTADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVRITHIPTG +V E+SQH+NR RAM +L+AR+ E ++ E + R+ Sbjct: 239 VNKTDSAVRITHIPTGTVVECQDERSQHKNRARAMSILQARIQAAEDEKARLEEESTRRS 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + SGDRSERIRTYN+ QGR++DHRINLTLY+L V++G +D +I P++ HQ Sbjct: 299 LVASGDRSERIRTYNYPQGRVSDHRINLTLYRLNEVMEGELDVLIQPIIHEHQ 351 >gi|254457086|ref|ZP_05070514.1| peptide chain release factor 1 [Campylobacterales bacterium GD 1] gi|207085878|gb|EDZ63162.1| peptide chain release factor 1 [Campylobacterales bacterium GD 1] Length = 355 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 173/358 (48%), Positives = 250/358 (69%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ NR+ E+ +S + L++E +++ PI+ K Y ++ Sbjct: 1 MLSDKLNPFINRYNELSELLSSPDITSDIKRMTALSKEQSSLLPIVEKAKEYKSIIKQIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++G D E+ D+A+ E+ +E +I +E I LLLPKD +DD++ I+E+RAG Sbjct: 61 ETKEMLG----DPEMIDMAKEELKELEPQIPLIEESIKLLLLPKDQNDDRNIIVELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+FVGDLF Y RYA ++ WKVE+LS+S +D GG+KE++A I G V+SR+K+E Sbjct: 117 GGDEAAIFVGDLFDAYTRYAEVKGWKVELLSTSPSDAGGFKEVIALIKGDQVYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G+HRVQRVP TE+ GRVHTSA TVAV+PE +++V I D++ID MR+SG GGQ VNTT Sbjct: 177 GIHRVQRVPETESQGRVHTSAITVAVMPEVDDVEVVINENDLKIDVMRSSGCGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++VT +KSQH+N+ +AMKVL+ARLYD+E + ++ S R Q+GS Sbjct: 237 DSAVRITHLPTGLVVTNQDQKSQHKNKEKAMKVLKARLYDLEMQEAQSKDSEARLAQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q R++DHRI LTLY+L ++ G +D++I PL+T HQAK++ +A Sbjct: 297 GDRSGRIRTYNYPQNRMSDHRITLTLYRLNEIMNGGLLDEVIEPLITDHQAKIVEAAG 354 >gi|91762346|ref|ZP_01264311.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter ubique HTCC1002] gi|91718148|gb|EAS84798.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter ubique HTCC1002] Length = 357 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 174/357 (48%), Positives = 253/357 (70%), Gaps = 3/357 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I DL ++ + +E +S + + ++EY+ ++ +I Y + E++D Sbjct: 1 MIPLKTIEDLISKHSVLEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D NSD+E +++A++E+ ++ E +E ++ LLPKD D K+ I+EIRAGTG Sbjct: 61 LEKILSDSNSDNEFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF+MYE+ + +KW++E++S S ++ GG KE++A+I G+ ++S +K+ESG Sbjct: 121 GLEASLFAADLFKMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I D+RID RA G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG+ V+ +KSQH+N+ + M +LR+RLY++ER R+ ERS +RK +IG+G Sbjct: 241 SAVRITHIPTGLSVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTL+KLE L+G D+++ L Q + + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLEAFLEGEAFDEMVENLTLQAQEEKLSNLN 357 >gi|329116672|ref|ZP_08245389.1| peptide chain release factor 1 [Streptococcus parauberis NCFD 2020] gi|326907077|gb|EGE53991.1| peptide chain release factor 1 [Streptococcus parauberis NCFD 2020] Length = 359 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 153/358 (42%), Positives = 228/358 (63%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A + Y Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEAGTRETVDVYRKYKDVIQAI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D DS+I ++A+ E+ + E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 ADAEEMIKDSGGDSDIEEMAREELKESKAAKETYEEQLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY+++A + W+ EV+ ++ N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKFAESQNWRFEVMEATYNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV ++PE E+D I +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLIMPEVEEVDYQIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPT I V E++Q +NR +A+K++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRMVHIPTNIKVEMQEERTQQKNRDKAIKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D+I++ L+ Q + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEIVDALVLYDQTQKLEDLN 358 >gi|20139347|sp|Q9AG29|RF1_STRAG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|13487345|gb|AAK27505.1|AF343879_1 peptide chain release factor 1 [Streptococcus agalactiae] Length = 359 Score = 265 bits (676), Expect = 9e-69, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 232/358 (64%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L+ E A ++ Y Q Q Sbjct: 1 MNIYDQLQPVEDRYEELGELLSDPYVVSDTKRFMELSREEANTRETVTAYREYKQVIQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I D + D+E+ ++A+ E+ + E E + LLLPKD +DDK+ ILEIR Sbjct: 61 SDAEEMIKDASGDAELEEMAKEELKESKAAKEEYEERLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ SS N GG KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAETQGWRFEVMESSVNGVGGIKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ +I +D+R D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYEIDQKDLRADIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR+ HIPTGI V E++Q +NR +AMK++RAR+ D + +E+ A RK +G Sbjct: 241 VATAVRMVHIPTGIKVEMQEERTQQKNRDKAMKIIRARVADHFAQIAQDEQDAERKSTVG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++I+ L+ Q + + + + Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKMDEVIDALVMYDQTQKLEALN 358 >gi|257453431|ref|ZP_05618726.1| peptide chain release factor 1 [Enhydrobacter aerosaccus SK60] gi|257449183|gb|EEV24131.1| peptide chain release factor 1 [Enhydrobacter aerosaccus SK60] Length = 364 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 178/361 (49%), Positives = 252/361 (69%), Gaps = 5/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +RF E+ +SE +++ + +L+ E++ +S ++ Y Q ++ Sbjct: 1 MKESLRFRLDQMSDRFEEVTAMLSEPETMNDNKKFRELSVEHSDLSALVDVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D +++++AQ E+ A + I ELE+ +N ++LPKD +D LEIR Sbjct: 61 DLATAEEMLSDATGDGDMKEMAQEEIQAAKDTINELEDVLNVMMLPKDPNDKVPAFLEIR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMYERYAA + W+VEVLS ++ + GGYKEI++ +SG GV+ R+K Sbjct: 121 AGTGGDEAAIFSGDLFRMYERYAATQGWQVEVLSENEGEHGGYKEIISRVSGTGVYGRLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVAV+PE D DI D+RIDT RASG+GGQH Sbjct: 181 FESGAHRVQRVPETESQGRVHTSACTVAVMPEVEIDDTVDINPADLRIDTYRASGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTG +V E+SQH NR +AMK+L +++ + ++ + S R+ Sbjct: 241 INKTDSAVRITHIPTGTVVECQQERSQHANRDKAMKMLVSKIQQEKVQKQIDASSDMRRN 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ ++QG +D++++ LL HQA ++ S Sbjct: 301 LVGSGDRSERIRTYNFPQGRMTDHRINLTLYKLDAIMQGDLDELLDSLLREHQADLMASV 360 Query: 356 S 356 S Sbjct: 361 S 361 >gi|153952433|ref|YP_001398893.1| peptide chain release factor 1 [Campylobacter jejuni subsp. doylei 269.97] gi|166223543|sp|A7H5W3|RF1_CAMJD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|152939879|gb|ABS44620.1| peptide chain release factor 1 [Campylobacter jejuni subsp. doylei 269.97] Length = 355 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S ++ K L++E + PI+ K Y + ++ Sbjct: 5 KLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEPIVLKTKEYLKTLDNIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDLNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQENERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQALQEQN 354 >gi|87198313|ref|YP_495570.1| peptide chain release factor 1 [Novosphingobium aromaticivorans DSM 12444] gi|119361571|sp|Q2GBN7|RF1_NOVAD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|87133994|gb|ABD24736.1| bacterial peptide chain release factor 1 (bRF-1) [Novosphingobium aromaticivorans DSM 12444] Length = 354 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 177/357 (49%), Positives = 249/357 (69%), Gaps = 8/357 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +S ++ + RFAE+E R++ +I + +YA + P+ + + E Sbjct: 1 MSVSDARLAQIAARFAELEARLASGTLEGADFIAASRDYAELEPVARVAEEVREMRGELV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 L + D ++R+LA E+ I E+ E E+ + +LP+D+ D + +LEIRAGT Sbjct: 61 SLAAL-----DDPDMRELADEELARIRAELPEAEHRLAVAMLPRDSADARPAMLEIRAGT 115 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF DLFRMYERYAA + W+VE +S + ND GGYKE+VA ++G+GVF+++KFES Sbjct: 116 GGDEAALFAADLFRMYERYAAEQGWRVETISVNANDLGGYKEVVANVAGQGVFAKLKFES 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSAATVAVLPE E+DV I +D++ID RASG+GGQHVNTT Sbjct: 176 GVHRVQRVPVTESGGRIHTSAATVAVLPEPDEVDVAIEDKDLKIDIYRASGAGGQHVNTT 235 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V E+SQH+N+ +AM+VLR RLYD+ R+ + RK +GS Sbjct: 236 DSAVRITHLPSGLVVTCQDERSQHKNKAKAMQVLRTRLYDMRREAAQGAEAEARKAMVGS 295 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF QGR+TDHRINLTL++L +L+G + ++I+ L+ Q+K + + Sbjct: 296 GDRSERIRTYNFPQGRVTDHRINLTLHRLPEILEGPGLAELIDALIAEDQSKRLAAM 352 >gi|319795450|ref|YP_004157090.1| peptide chain release factor 1 [Variovorax paradoxus EPS] gi|315597913|gb|ADU38979.1| peptide chain release factor 1 [Variovorax paradoxus EPS] Length = 362 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 164/361 (45%), Positives = 230/361 (63%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A I+ I + Y Q++ Sbjct: 1 MKSFLRHQLERYVQRLGELDFLLSREDIMSDMAQYRTISREHAEITQIAGRYERYRQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++A+ E+ E E+ +LE E+ LLLPKD DD ++ +EIR Sbjct: 61 DIAGAKEML----DDPDMAEMAREEIAGAEAELVQLEEELQRLLLPKDPDDARNAFMEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RY + E++S S ++ GGYKE+V I G VF +++ Sbjct: 117 AGTGGDESALFAGDLLRMYTRYCERAGLRCEIVSESASELGGYKEVVIRIVGDEVFGKLR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAVL + V I D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVLAEPDETVAVQINPADLRIDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVRITHIPTGI+ ++SQH+N+ +A++VL AR+ + +R A + +A RK Sbjct: 237 INKTDSAVRITHIPTGIVAECQDDRSQHRNKAKALQVLSARIQEKDRSERAAKDAAMRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + D++ L A +A+ + Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGDVLEALRAAREAEQLAEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|294782570|ref|ZP_06747896.1| peptide chain release factor 1 [Fusobacterium sp. 1_1_41FAA] gi|294481211|gb|EFG28986.1| peptide chain release factor 1 [Fusobacterium sp. 1_1_41FAA] Length = 357 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 164/356 (46%), Positives = 240/356 (67%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 3 DKLEEVVARYEELNQMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D++++++ E+ E+++ LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 63 ESFK-TEKDADMKEMLNEELKEAEEKLPSLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA RKWK+E++ D + G KE+ TI G G +SR+KFESGVH Sbjct: 122 EAALFAADLFRMYSRYAERRKWKIEIIEKQDGELNGLKEVAFTIIGLGAYSRLKFESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE +I + +D++IDT R+ G+GGQHVN TDS Sbjct: 182 RVQRVPKTEASGRIHTSTATVAVLPEVEDIQEVIVDPKDLKIDTYRSGGAGGQHVNMTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 242 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 302 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 357 >gi|325954306|ref|YP_004237966.1| peptide chain release factor 1 [Weeksella virosa DSM 16922] gi|323436924|gb|ADX67388.1| Peptide chain release factor 1 [Weeksella virosa DSM 16922] Length = 362 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 153/351 (43%), Positives = 234/351 (66%), Gaps = 5/351 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K RF E+ + + + Y KL +EY+ + + K Y+ ++ + Sbjct: 8 DKLRAIKQRFDEVADLIIQPDIITDQARYAKLNKEYSDLRDYVEKQEEYEGLLNVLEEAN 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I D SD E+ +LA++E +I +LE EI ++L+PKD +DDK+ I+E+RAGTGG Sbjct: 68 AIIAD-GSDEEMVELAKLEKDEALHKIPKLEEEIKFMLIPKDPEDDKNVIVELRAGTGGD 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+FV D++RMY Y + W+ EVL++S+ G+KE+V ++ G V+ MK+ESGVH Sbjct: 127 EAAIFVEDIYRMYAMYFKQKGWQHEVLNTSEASGKGFKEMVISVEGNAVYGTMKYESGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTSA TVAVLPEA E+DV+I D+ T R+SG+GGQ+VN ++ Sbjct: 187 RVQRVPETESQGRVHTSAITVAVLPEAEEVDVEINPADLEYQTARSSGAGGQNVNKVETK 246 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V++TH P+GI+ V +SQH+NR +A+++LR +LY++E ++ ERS RK + +GDR Sbjct: 247 VQLTHKPSGIVIVCQEARSQHKNREKALQLLRTKLYEIEFEKKHAERSEQRKSLVSTGDR 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 S +IRTYN+ QGR+TDHRIN ++Y L+ + G I ++I+ L A A+ + Sbjct: 307 SAKIRTYNYPQGRVTDHRINKSIYNLDNFMNGDIQEMIDALKVAENAEKLK 357 >gi|195953354|ref|YP_002121644.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1] gi|229576658|sp|B4U955|RF1_HYDS0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|195932966|gb|ACG57666.1| peptide chain release factor 1 [Hydrogenobaculum sp. Y04AAS1] Length = 356 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 169/360 (46%), Positives = 241/360 (66%), Gaps = 11/360 (3%) Query: 3 FLSH---KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 L ++I D++ ++A+ E +++ Y L+++ +S I Y++ Sbjct: 1 MLPKNFLEKIQDIEQKYAQTEEKLASLDITKDADTYKALSKDLKELSYIHELYKDYNKIL 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ +D ++ D ++R+LA+ E+ + ++ + E E+ +L PKD +D K+ ILEI Sbjct: 61 KDIEDTKELLK----DKDLRELAEKELENLNTKLLQKEKELINVLTPKDANDSKNVILEI 116 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 RAG GG EAALF DL RMY+RYA + WK +L ++ GGYKE++ +I G+ V+S + Sbjct: 117 RAGAGGEEAALFAADLLRMYQRYAERKGWKFNILEANKTGLGGYKEVIVSIEGKNVYSHL 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ESGVHRVQRVP TE+ GR+HTS TVAVLPEA E DV I +D+RI+T RASG+GGQ+ Sbjct: 177 KYESGVHRVQRVPITESGGRIHTSTITVAVLPEADETDVVINPQDLRIETFRASGAGGQY 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SAVRITHIPTGI + E+SQ QN+L+AM++L ARL D K+ E RK Sbjct: 237 VNTTESAVRITHIPTGISISCQDERSQLQNKLKAMRILYARLKDFYEKQKKEETDKERKE 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+G+G+RSE+IRTYNFSQ R+TDHRINLTL+KL+ VL G +DDII+ L + + SA Sbjct: 297 QVGTGERSEKIRTYNFSQNRVTDHRINLTLHKLQDVLDGDLDDIISSLQAKELEEKLASA 356 >gi|71083224|ref|YP_265943.1| protein release factor class I [Candidatus Pelagibacter ubique HTCC1062] gi|119361574|sp|Q4FN99|RF1_PELUB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71062337|gb|AAZ21340.1| protein release factor Class I (RF-1) [Candidatus Pelagibacter ubique HTCC1062] Length = 357 Score = 265 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 174/357 (48%), Positives = 253/357 (70%), Gaps = 3/357 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I DL ++ + +E +S + + ++EY+ ++ +I Y + E++D Sbjct: 1 MIPLKTIEDLISKHSILEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D NSD+E +++A++E+ ++ E +E ++ LLPKD D K+ I+EIRAGTG Sbjct: 61 LEKILSDSNSDNEFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF+MYE+ + +KW++E++S S ++ GG KE++A+I G+ ++S +K+ESG Sbjct: 121 GLEASLFAADLFKMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I D+RID RA G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG+ V+ +KSQH+N+ + M +LR+RLY++ER R+ ERS +RK +IG+G Sbjct: 241 SAVRITHIPTGLSVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTL+KLE L+G D+++ L Q + + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLEAFLEGEAFDEMVENLTLQAQEEKLSNLN 357 >gi|256820779|ref|YP_003142058.1| peptide chain release factor 1 [Capnocytophaga ochracea DSM 7271] gi|315223922|ref|ZP_07865767.1| peptide chain release factor RF1 [Capnocytophaga ochracea F0287] gi|256582362|gb|ACU93497.1| peptide chain release factor 1 [Capnocytophaga ochracea DSM 7271] gi|314946094|gb|EFS98098.1| peptide chain release factor RF1 [Capnocytophaga ochracea F0287] Length = 357 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + YI+L +EY + ++ K Y Q+ Sbjct: 1 MLDKLNIVKQRFDEVSDLIIQPDIIADQKRYIQLNKEYKDLKELMDKRDEYINVTGNLQE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A++++ ++ + +LE EI Y+L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIIAD-GSDAEMVEMAKLQLEESKERLPQLEEEIKYMLIPKDPEDAKNAVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y + W V+ ++ GGYKEI+ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYCQSKGWSTSVMDFNEGTAGGYKEIIFEVTGDNVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV++ + D++I ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVIVLPEAEEFDVELDMADVKIIRTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+++ HIPTGI V EKSQH+N +A+KVLR+RLY++E + SA RK + SG Sbjct: 240 SAIQLQHIPTGIEVRCQDEKSQHKNLEKALKVLRSRLYEMELAKKMEADSARRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS +IRTYN+ QGR+TDHRI LTLY L+ V+ G + +I+ L A A+ + Sbjct: 300 DRSAKIRTYNYPQGRVTDHRIGLTLYDLQNVINGDVQRLIDELQLAENAEKLKE 353 >gi|58337080|ref|YP_193665.1| peptide chain release factor 1 [Lactobacillus acidophilus NCFM] gi|227903648|ref|ZP_04021453.1| peptide chain release factor 1 [Lactobacillus acidophilus ATCC 4796] gi|75432974|sp|Q5FKZ0|RF1_LACAC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|58254397|gb|AAV42634.1| peptide chain release factor I [Lactobacillus acidophilus NCFM] gi|227868535|gb|EEJ75956.1| peptide chain release factor 1 [Lactobacillus acidophilus ATCC 4796] Length = 361 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y + K+E +D Sbjct: 7 QLESLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKENKKEIEDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + +DS++ ++A+ E +EKEI ELE++I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-NETDSDLIEMAKEENAELEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + W V ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQNWNVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|313905737|ref|ZP_07839097.1| peptide chain release factor 1 [Eubacterium cellulosolvens 6] gi|313469444|gb|EFR64786.1| peptide chain release factor 1 [Eubacterium cellulosolvens 6] Length = 360 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 161/356 (45%), Positives = 243/356 (68%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ D++ R EI ++S+ KL +E A +SP+ + Y + ++ D Sbjct: 3 EKLEDVQIRLDEILCQLSDPATAGDSARMQKLMKEQAELSPVAEMYAAYRKNEETISDSL 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD ++R++ + E+ + + E E+ LLLPKD +DDKS I+EIRAG GG Sbjct: 63 ELL-ESESDPDMREMLKEELQEAKANRSKYERELQLLLLPKDPNDDKSVIVEIRAGAGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF +++RMY RYA ++W+ E++S + GG KE ISG G +S++K+ESGVH Sbjct: 122 EAALFAYEIYRMYVRYAEKQRWQTELMSIDETGLGGLKECSFEISGSGAYSKLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVPATE+ GR+HTS TVAV+P+ +I ++IP +D+RID MRASG+GGQ VNTTDS Sbjct: 182 RVQRVPATESGGRIHTSTITVAVMPKVDDDIQIEIPDKDVRIDVMRASGNGGQCVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH PTGI++ + +EKSQ QN+ +A ++LR++LY +E ++ + + R+ QIG+GD Sbjct: 242 AVRLTHYPTGIVIYSQTEKSQIQNKAKAWELLRSKLYVLEMEKRHDAEADLRRSQIGTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYNF QGR+TDHRI LTL++++ +L G +D++I L A QA + + Sbjct: 302 RSEKIRTYNFPQGRVTDHRIKLTLHQIDSILNGDLDELIQTLTAADQAAKLTKMQD 357 >gi|304407781|ref|ZP_07389432.1| peptide chain release factor 1 [Paenibacillus curdlanolyticus YK9] gi|304343264|gb|EFM09107.1| peptide chain release factor 1 [Paenibacillus curdlanolyticus YK9] Length = 358 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 240/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + +L ++E +++ + Y Q ++ D Sbjct: 1 MLDRLSVLADRYEKLSELLCDPDVAGDPKRLREYSKEQSSLQEAYEAFTEYKQVCEQLDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++G+ D E+R++ ++E+ +++ L+ I LLLPKD +DDK+ I+EIR G Sbjct: 61 AKLMLGEKLDD-EMREMVKMEIGELDERKTALDERIRILLLPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY +YA + W+VE++ +++D GG+KE+V I G+G +S++KFESG Sbjct: 120 GDEAALFAYDLYRMYNKYADSQGWRVELMDMNESDLGGFKEVVFMIIGKGAYSKLKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+PATE+ GR+HTS +TVAV+PE E+D++I +DIRIDT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPATESGGRIHTSTSTVAVMPEIEEVDIEIHDKDIRIDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H+PTGIM KSQ++N+ +A++VLRAR+Y++ R+ + + RK ++G+G Sbjct: 240 SAVRVLHVPTGIMATCQDGKSQNENKAKALQVLRARIYEIHRQEEEAKYAGERKSKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ Q R+TDHRI LTL++L+ ++ G I++I+ L QA+++ + Sbjct: 300 DRSERIRTYNYPQSRVTDHRIGLTLHRLDAIMNGDIEEIVQTLTITEQAELLEQEN 355 >gi|168203426|gb|ACA21561.1| protein release factor class I [Candidatus Pelagibacter ubique] Length = 356 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 175/356 (49%), Positives = 249/356 (69%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I +L N+ ++E +S + + ++EY+ ++ II+ Y + ++ + Sbjct: 1 MIPQKTIEELINKHMQLEKDLSSDKIDKKLFAEKSKEYSDLNEIIADAKKYLSFENDKTE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D NSD E+ +A+ E+ ++ + + E ++ LLP+D D K+ I+EIRAGTG Sbjct: 61 LKKILEDQNSDEELLKMAETEIKDLQIQFEKNEKKLKLFLLPRDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF GDLF+MYE+ + +KW VE++S S ++ GG KE++A+I G ++S +K+ESG Sbjct: 121 GLEASLFAGDLFKMYEKVSHKKKWLVEIISISKSEAGGLKEVIASIKGTNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I D+RID RA G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINDSDLRIDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG+ V+ + KSQH+N+ + MK+LRARLY++ER R+ ERS +RK +IG+G Sbjct: 241 SAVRITHIPTGLSVSQQDEKSQHKNKAKGMKILRARLYELERTRIDQERSQDRKSKIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLT++KLE L+G D++I L Q + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTIHKLEEFLEGEAFDEMIESLTLQAQEESLSNL 356 >gi|296271838|ref|YP_003654469.1| peptide chain release factor 1 [Arcobacter nitrofigilis DSM 7299] gi|296096013|gb|ADG91963.1| peptide chain release factor 1 [Arcobacter nitrofigilis DSM 7299] Length = 355 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 178/356 (50%), Positives = 250/356 (70%), Gaps = 9/356 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ EI ++ + L++E +AI PI++K Y + Q Sbjct: 1 MLQDKLQLFIDRYEEINGLLASPDISSDIKRMTTLSKEQSAIEPIVNKAKEYISVLNDIQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + D E+ +LA+ E+ +E +E EI L++PKD +D+K+ +E+RAG Sbjct: 61 DNKLLY----DDPELGELAKEELKDLELRKPTIEEEIKVLMIPKDPNDNKNIFIELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVG+LFR Y RYA L+ WKVE+++ S+N+ GGYKEIVA G V+SR+K+ES Sbjct: 117 GGDEAGIFVGNLFRAYLRYAELKGWKVEIMNQSENEAGGYKEIVALFKGEQVYSRLKYES 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE+ GRVHTSA TVAV+PE +++V+I D++ID MRASG+GGQ VNTT Sbjct: 177 GTHRVQRVPATESQGRVHTSAITVAVMPEVDDVEVEIDPGDLKIDVMRASGNGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+G++VT +KSQH+N+ +AMKVL+ARLYD++ + + A+RK Q+G+ Sbjct: 237 DSAVRITHIPSGLVVTNQDQKSQHKNKDKAMKVLKARLYDIQMQEKMDSEGASRKEQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 GDRS RIRTYN+ QGRI+DHRINLTLY+LE V+ G D+II+PL+T Q+K I + Sbjct: 297 GDRSGRIRTYNYPQGRISDHRINLTLYRLEAVMNDGVFDEIIDPLITDAQSKAIEA 352 >gi|19704667|ref|NP_604229.1| peptide chain release factor 1 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|22096034|sp|Q8R5W0|RF1_FUSNN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|19714975|gb|AAL95528.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 365 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 165/356 (46%), Positives = 241/356 (67%), Gaps = 6/356 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ + + K+ + I+ I+ K Y + + + + Sbjct: 11 DKLEEVVARYDELNKMLVSPEVLADSKKMIECNKAINEITEIVEKYKEYKKYVDDIEFIK 70 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 DS+++++ E+ E+++ +LE E+ LLLPKD +DDK+ I+EIR G GG Sbjct: 71 ESFK-TEKDSDMKEMLNEELKEAEEKLPKLEEELKILLLPKDKNDDKNVIVEIRGGAGGD 129 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DLFRMY RYA +KWK+E++ D + G KEI TI G G +SR+KFESGVH Sbjct: 130 EAALFAADLFRMYSRYAERKKWKIEIIEKQDGELNGLKEIAFTIIGLGAYSRLKFESGVH 189 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TEASGR+HTS ATVAVLPE +I + +D++IDT R+ G+GGQHVN TDS Sbjct: 190 RVQRVPKTEASGRIHTSTATVAVLPEVEDIQEVTVDPKDLKIDTYRSGGAGGQHVNMTDS 249 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ +NR +AMK L +LY++E+++ +E + R+LQ+G+GD Sbjct: 250 AVRITHLPTGIVVQCQDERSQLKNREKAMKHLLTKLYEMEQEKQRSEVESERRLQVGTGD 309 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+E+IRTYNF GRITDHRI LT+++LE L G ID++I+ L+T HQA+++ ++ + Sbjct: 310 RAEKIRTYNFPDGRITDHRIKLTVHQLEAFLDGDIDEMIDALITFHQAELLSASEQ 365 >gi|221195206|ref|ZP_03568262.1| peptide chain release factor 1 [Atopobium rimae ATCC 49626] gi|221185109|gb|EEE17500.1| peptide chain release factor 1 [Atopobium rimae ATCC 49626] Length = 355 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 162/357 (45%), Positives = 231/357 (64%), Gaps = 9/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + + +A++E ++++ V Y ++ +E+A + ++ Y + + Sbjct: 1 MRDKLEKILSAYADLEKKLADPAVVSDPKEYARIAKEHADQAELVELSRSYIDALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +SD+E +++ Q ++ E ++ ELE+EI L+P D +D+K I+EIRAG G Sbjct: 61 AKELLS-GSSDAEEKEMLQADISENEAKLPELEDEIKIKLIPGDPNDEKDTIVEIRAGVG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MYER+A R WKV+VLSSS ++ GG+K I ++G V+S MKFESG Sbjct: 120 GDEAAIFAGDLFKMYERFAESRGWKVQVLSSSPSEAGGFKTIEFKVTGEKVYSVMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA +ID+ I ED+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRVPKTESQGRIQTSTATVAVLPEADDIDIQINQEDLRIDTYCASGPGGQGVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY+ E +R E+ A+R QIG G Sbjct: 240 SAVRITHLPTNTVVQSQDQRSQIQNREVCMQMLRARLYEQELERQQAEQGADRLSQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 RSE+IRTYN Q R+TDHRI Y VL G + +I L A +A+ + A Sbjct: 300 ARSEKIRTYNQPQDRVTDHRIGFNGTYN--GVLLGDTLPSVIESLAAAERAEKLAQA 354 >gi|302392966|ref|YP_003828786.1| bacterial peptide chain release factor 1 (bRF-1) [Acetohalobium arabaticum DSM 5501] gi|302205043|gb|ADL13721.1| bacterial peptide chain release factor 1 (bRF-1) [Acetohalobium arabaticum DSM 5501] Length = 359 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 251/354 (70%), Gaps = 5/354 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + D + R+ +++ +S+ ++ + KL++E+A + ++ K Y + E ++ Sbjct: 5 KEALDDAEARYEKLQKMLSDPEVINNQSKFQKLSKEHAELKKLVKKYRKYKEIMAEIEEA 64 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + D E +LA++E+ +E + +LE E+ +L+P+D +D+K+ I+EIRAGTGG Sbjct: 65 KE-LLEMEDDEEAVELAKMELAELEPKQEKLEEELPLMLIPEDPNDEKNVIVEIRAGTGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF G+L+RMY RYA + W V+++SSS ++ GG+KE++ + G+G +SR+K+ESGV Sbjct: 124 DEAALFAGELYRMYSRYAEKQDWDVDIMSSSSSEVGGFKEMIFVVEGKGAYSRLKYESGV 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+SGR+HTS ATVAVLPEA ++D++I D+ I+T R+SG GGQ VNTTDS Sbjct: 184 HRVQRVPETESSGRIHTSTATVAVLPEAEDVDIEINQNDLTIETYRSSGPGGQSVNTTDS 243 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTG++V EKSQH+N+ +AM+VLR+R+ + E + RK+QIGSG Sbjct: 244 AVRITHEPTGVVVSCQDEKSQHKNKRKAMRVLRSRIQEKIEAEKQAEEAEKRKMQIGSGG 303 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF QGRITDHRINLT +++E +L G ID++++ L+TA Q + + Sbjct: 304 RSERIRTYNFPQGRITDHRINLTTHQMESILDGEIDELVDELVTADQTEKLEQM 357 >gi|42560702|ref|NP_975153.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|61214633|sp|Q6MU89|RF1_MYCMS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|42492198|emb|CAE76795.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320433|gb|ADK69076.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 364 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 153/355 (43%), Positives = 231/355 (65%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I + + + + +L +E + + ++ K Y + + +D Sbjct: 7 EALETMQKRLLQILKDLEDENILKDIKKFTELNKEKSNLEEVVEKFVEYKKAVEHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ D E+ +LA+IE+ ++ L+ I +LLPKD +DDK+ I+EIR GG Sbjct: 67 AIL-ENEKDQELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDDKNVIVEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASVGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LR ++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRTKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ Q R+TDHR+ LTL KL+ V++G ID+ I L+ Q + + E Sbjct: 306 SEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQLE 360 >gi|325281736|ref|YP_004254278.1| Peptide chain release factor 1 [Odoribacter splanchnicus DSM 20712] gi|324313545|gb|ADY34098.1| Peptide chain release factor 1 [Odoribacter splanchnicus DSM 20712] Length = 368 Score = 264 bits (675), Expect = 1e-68, Method: Composition-based stats. Identities = 151/362 (41%), Positives = 226/362 (62%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ RF EI +++ + Y++LT+EY + I + ++ Sbjct: 7 EKLETYYIRFKEIGQLITDPEVIQDMERYVRLTKEYKELETITRTADKFKAALLSVEESK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ H D E+R++A++E+ +E ++ +E E+ LL+P D DD K+ ILEIR GTGG Sbjct: 67 DIL-LHEEDKELREMAEMEIEELEDKLPGMEQELKLLLVPADPDDSKNVILEIRGGTGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF GDLFRMY ++ + WKVEV ++++ GGYKEIVA+++G+GV+ MK+ESGVH Sbjct: 126 EACLFAGDLFRMYAKFCERKGWKVEVTNANEGTAGGYKEIVASVTGKGVYGIMKYESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA +V+I I+ DT R+ G+GGQ+VN +S Sbjct: 186 RVQRVPATETQGRVHTSAATVAVLPEAEAFEVEINEGAIKWDTFRSGGAGGQNVNKVESG 245 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR+ ++ ++ + + Q +N+ RA+ LR +YD E ++ ++ SA RK Sbjct: 246 VRLRYVWQNPNTGVAEEILIECTETRDQPKNKERALSRLRTFIYDKEHQKYIDDISAKRK 305 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ QGR+TDHRIN TLY L+ V+ G ID+II L + + Sbjct: 306 TMVSTGDRSAKIRTYNYPQGRVTDHRINFTLYNLQAVMDGEIDEIIEKLQIEENTERLKE 365 Query: 355 AS 356 + Sbjct: 366 SG 367 >gi|331703153|ref|YP_004399840.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri LC str. 95010] gi|328801708|emb|CBW53861.1| Peptide chain release factor 1 [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 364 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 232/355 (65%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I + + + + +L +E + + ++ K Y Q + +D Sbjct: 7 EALETMQKRLLQILKDLEDENILKDIKKFTELNKEKSNLEEVVEKFVEYKQAVEHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ D E+ +LA+IE+ ++ L+ I +LLPKD +DDK+ I+EIR GG Sbjct: 67 AIL-ENEKDQELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDDKNVIVEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASVGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LRA++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ Q R+TDHR+ LTL KL+ V++G ID+ I L+ Q + + E Sbjct: 306 SEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQLE 360 >gi|148984974|ref|ZP_01818217.1| peptide chain release factor 1 [Streptococcus pneumoniae SP3-BS71] gi|147922672|gb|EDK73789.1| peptide chain release factor 1 [Streptococcus pneumoniae SP3-BS71] Length = 354 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 157/350 (44%), Positives = 231/350 (66%), Gaps = 4/350 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQNI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D +I + D+++ +LA+ E+ + E E E ++ LLLPKD +DDK+ ILEIR Sbjct: 61 VDAEEMIKESGGDADLEELAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGA 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+E Sbjct: 121 AGGDEAALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN Sbjct: 181 SGAHRVQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNK 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVRI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG Sbjct: 241 VATAVRIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +GDRSERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q Sbjct: 301 TGDRSERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQ 350 >gi|261416348|ref|YP_003250031.1| peptide chain release factor 1 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372804|gb|ACX75549.1| peptide chain release factor 1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 355 Score = 264 bits (674), Expect = 1e-68, Method: Composition-based stats. Identities = 160/352 (45%), Positives = 225/352 (63%), Gaps = 6/352 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQD 61 + L ++ E+E + + + + + I + K Y Q + + Sbjct: 1 MKDKAKKLIEKYEELESELGNPDVLGDQARYNKIHKQYKGIEKAVLKAKEYLQMMDDLDE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +GD SD E+ +A+ E+ IEK++ E+ +E+ L++PKD D ++ LEIR GTG Sbjct: 61 YKAALGD--SDPEMVAMAKAEISEIEKKLPEVTDELQILMVPKDPWDYRNATLEIRGGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDLFRMY Y WK+ + S+ GGYKEI I G V+ +KFESG Sbjct: 119 GDESALFAGDLFRMYRGYCDKMGWKMTIQDLSEGTVGGYKEIRVFIEGDSVYGTLKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVA+LPEA E+DV+I DI +DT R+SG+GGQ++N TD Sbjct: 179 VHRVQRVPETETQGRVHTSAATVAILPEAEEVDVEIREADIHMDTYRSSGAGGQYINKTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V +E+SQ QNRL AM++LR+++ D + E +ANRK +G+G Sbjct: 239 SAVRLTHIPTGVVVSCQTERSQLQNRLHAMEMLRSKILDAVIAKKEKEEAANRKALVGTG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 DRS +IRTYN+ Q R+TDHRI LT+Y L+ V+ G +D+IIN L A+ + + Sbjct: 299 DRSAKIRTYNYPQNRVTDHRIGLTVYNLDKVVTGDLDEIINGLQMANAQEKL 350 >gi|149195429|ref|ZP_01872512.1| peptide chain release factor 1 [Caminibacter mediatlanticus TB-2] gi|149134434|gb|EDM22927.1| peptide chain release factor 1 [Caminibacter mediatlanticus TB-2] Length = 355 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 170/358 (47%), Positives = 248/358 (69%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ EI ++S + KL+ E ++ I++K Y++ + Sbjct: 1 MLLEKLKPFVEKYNEINQKLSSPEITKDIKQMTKLSREARSLEEIVNKAKEYEELLNNLE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D+E+ +LA+ E+ IE+++ +LE EI LLLPKD +DDK+ LEIRAGT Sbjct: 61 EAKMML----DDAEMSELAKEEIKEIEEKLPKLEEEIKLLLLPKDPNDDKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVGDL + Y RYA + WKVE++S S ND GGYKEI+ I G G +SR+K+E Sbjct: 117 GGDEAALFVGDLMKAYLRYADNKGWKVEIVSESKNDIGGYKEIILLIKGEGAYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+PATE+ GR+HTSA TVAV+PE ++D+++ +DI+I+ MRA G+GGQHVN T Sbjct: 177 GTHRVQRIPATESQGRIHTSAVTVAVMPEVDDVDIELDPKDIKIEVMRAGGAGGQHVNKT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVR+THIPTGI V+ E+SQ +N+ +A+++L+AR+Y+ K + RK Q+GS Sbjct: 237 ESAVRMTHIPTGITVSMQDERSQQRNKEKALQILKARVYEKLEKERLEKIGKERKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ Q RITDHRI LTLY+LE ++ +G D+II+PL+ +QA+ + A Sbjct: 297 GDRSERIRTYNYPQNRITDHRIGLTLYRLEQIMNEGLFDEIIDPLIAHYQAEALKEAG 354 >gi|256384120|gb|ACU78690.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri str. GM12] gi|256384952|gb|ACU79521.1| peptide chain release factor 1 [Mycoplasma mycoides subsp. capri str. GM12] gi|296455380|gb|ADH21615.1| peptide chain release factor 1 [synthetic Mycoplasma mycoides JCVI-syn1.0] Length = 364 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 155/355 (43%), Positives = 232/355 (65%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I + + + + +L +E + + ++ K Y Q + +D Sbjct: 7 EALETMQKRLLQILKDLEDENILKDIKKFTELNKEKSNLEEVVEKFVEYKQAVEHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ D E+ +LA+IE+ ++ L+ I +LLPKD +DDK+ I+EIR GG Sbjct: 67 VIL-ENEKDQELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDDKNVIVEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASVGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LRA++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ Q R+TDHR+ LTL KL+ V++G ID+ I L+ Q + + E Sbjct: 306 SEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQLE 360 >gi|209965909|ref|YP_002298824.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW] gi|209959375|gb|ACJ00012.1| peptide chain release factor 1 PrfA [Rhodospirillum centenum SW] Length = 360 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 177/344 (51%), Positives = 249/344 (72%), Gaps = 5/344 (1%) Query: 15 RFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R+ E+ +++ +++ ++EYA + P+ + I+ + + + DL + D+ Sbjct: 18 RYDELRDQLASGTLSGEVFVRSSQEYAELEPVATAIAELRRARADMADLQAMA--EGDDA 75 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E+ LA+ E++ ++ I ELE I LLPKD D+K+ ILE+RAGTGG EAALF +LF Sbjct: 76 EMATLARDELVEADRRIPELERRIMLALLPKDEADEKNAILEVRAGTGGDEAALFAAELF 135 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY RYA ++ W+ E + ++ GGYKE A+I+GR VF R+KFESGVHRVQRVP TEA Sbjct: 136 EMYRRYAGIQGWRFETIEVNETGLGGYKEASASITGRNVFRRLKFESGVHRVQRVPETEA 195 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 GR+HTSAATVAVLPEA E+D+ I +D+RID R+ GSGGQ VNTTDSAVRITH+PT I Sbjct: 196 GGRIHTSAATVAVLPEAEEVDIHIEEKDLRIDVFRSQGSGGQSVNTTDSAVRITHLPTNI 255 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 +V EKSQH+N+ +A+KVLRARLY++ER+R +ER+A+R+ Q+GSGDRSERIRTYNF Sbjct: 256 VVQCQDEKSQHKNKAKALKVLRARLYEIERQRRDSERAASRRTQVGSGDRSERIRTYNFP 315 Query: 313 QGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 QGR+TDHRINLTLYK++ V+ G +D++++ L+ + +A+ + Sbjct: 316 QGRVTDHRINLTLYKIDKVMAGEALDELVDALVASDEAERLAEL 359 >gi|163789460|ref|ZP_02183899.1| peptide chain release factor 1 [Carnobacterium sp. AT7] gi|159875314|gb|EDP69379.1| peptide chain release factor 1 [Carnobacterium sp. AT7] Length = 358 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 165/353 (46%), Positives = 238/353 (67%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ +S+ V KLT+E AAI ++ Y + +Q+ D Sbjct: 3 DRLESVEGRYEELNELLSDPEVVSDTKRLMKLTKEEAAIRETVATYRRYKEVEQDISDTE 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ DSE+ ++A+ E+ ++KE E+E ++ L+LPKD +DD++ I+EIR GG Sbjct: 63 DMLGEK-LDSEMAEMAKEELNDLKKEKTEIEEKMKVLMLPKDENDDRNIIMEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF G LF MY++YA + WK EVL ++ GGYKEI I+G V+S++K+E+G H Sbjct: 122 EAQLFAGTLFNMYQKYADAQGWKTEVLDANITGIGGYKEITLMITGDNVYSKLKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GR+HTS ATV V+PEA E+++D+P +DIR D ASG+GGQHVN T SA Sbjct: 182 RVQRVPSTESQGRIHTSTATVVVMPEAEEVELDLPDKDIRTDIYHASGAGGQHVNKTASA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI V E+SQ +NR +AMKVLRAR+YD ++ +E A RK IG+GDR Sbjct: 242 VRLTHLPTGIAVAMQDERSQIKNREKAMKVLRARVYDHIQQAAQSEYDAERKSAIGTGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYN+ Q R+TDHRI LT+ KL+ +L G +D+II+ L+ Q + Sbjct: 302 SERIRTYNYPQSRVTDHRIGLTIQKLDQILSGKLDEIIDALVLNEQTAKMEQL 354 >gi|194332966|ref|YP_002014826.1| peptide chain release factor 1 [Prosthecochloris aestuarii DSM 271] gi|238693294|sp|B4S385|RF1_PROA2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194310784|gb|ACF45179.1| peptide chain release factor 1 [Prosthecochloris aestuarii DSM 271] Length = 357 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 160/358 (44%), Positives = 226/358 (63%), Gaps = 6/358 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ K+ + +E ++S+ + + KL +EY+ + I+ Y +++ ++ Sbjct: 1 MLNKLESAKDHYIRLEEQLSDPDIIGDQQRFRKLNKEYSDLKEIVQAYDRYISNRRQIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + ++ SD E++ LA+ E + + ELE ++ LLLPKD D ++ I+EIRAGTG Sbjct: 61 VLGMLA-KESDPEMKALAEEEYNELLADQPELEQQLKLLLLPKDEADSRNVIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG-YKEIVATISGRGVFSRMKFES 180 G EAALF DL RMY+R+A R WK E+L ++ + G KE ISG V+ MKFES Sbjct: 120 GDEAALFATDLLRMYQRFAERRGWKCELLEFNEANTPGACKEASMAISGHDVYGIMKFES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GR+HTSAA+VAVLPEA E+D++I +D+R+DT R+ G GGQ+VN Sbjct: 180 GVHRVQRVPETETQGRIHTSAASVAVLPEAEEVDIEIRKDDLRVDTFRSGGKGGQNVNKV 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVRITH P+GI+V E+SQ QNR RAMK+LRA+LYD E ER+ RK + S Sbjct: 240 ETAVRITHAPSGIVVACQEERSQLQNRERAMKMLRAKLYDRELADKNKERADLRKSMVSS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRS +IRTYNF Q R+TDHRI T + L +L G +DD+I L Q + + Sbjct: 300 GDRSAKIRTYNFPQSRVTDHRIGYTSHALPQILDGNLDDLIEALKLYEQTARLQEQQQ 357 >gi|323466867|gb|ADX70554.1| Peptide chain release factor 1 [Lactobacillus helveticus H10] Length = 362 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 161/354 (45%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y + K+E D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKEDKKEIADNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + +DS++ ++A+ E IEKEI ELE++I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIA-NETDSDLIEMAKEENAEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQNWKVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|227877271|ref|ZP_03995344.1| peptide chain release factor RF1 [Lactobacillus crispatus JV-V01] gi|256842834|ref|ZP_05548322.1| peptide chain release factor 1 [Lactobacillus crispatus 125-2-CHN] gi|256848802|ref|ZP_05554236.1| peptide chain release factor 1 [Lactobacillus crispatus MV-1A-US] gi|262045800|ref|ZP_06018764.1| peptide chain release factor 1 [Lactobacillus crispatus MV-3A-US] gi|293381669|ref|ZP_06627650.1| peptide chain release factor 1 [Lactobacillus crispatus 214-1] gi|295692623|ref|YP_003601233.1| peptide chain release factor 1 [Lactobacillus crispatus ST1] gi|312977646|ref|ZP_07789393.1| peptide chain release factor 1 [Lactobacillus crispatus CTV-05] gi|227863127|gb|EEJ70573.1| peptide chain release factor RF1 [Lactobacillus crispatus JV-V01] gi|256614254|gb|EEU19455.1| peptide chain release factor 1 [Lactobacillus crispatus 125-2-CHN] gi|256714341|gb|EEU29328.1| peptide chain release factor 1 [Lactobacillus crispatus MV-1A-US] gi|260573759|gb|EEX30315.1| peptide chain release factor 1 [Lactobacillus crispatus MV-3A-US] gi|290921716|gb|EFD98737.1| peptide chain release factor 1 [Lactobacillus crispatus 214-1] gi|295030729|emb|CBL50208.1| Peptide chain release factor 1 [Lactobacillus crispatus ST1] gi|310895385|gb|EFQ44452.1| peptide chain release factor 1 [Lactobacillus crispatus CTV-05] Length = 362 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 160/354 (45%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y + K+E +D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKEDKKEIEDNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I +D ++ ++A+ E IEKEI ELE++I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-SETDPDLIEMAKEENSEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQNWKVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAQYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|295134987|ref|YP_003585663.1| peptide chain release factor 1 [Zunongwangia profunda SM-A87] gi|294983002|gb|ADF53467.1| peptide chain release factor 1 [Zunongwangia profunda SM-A87] Length = 358 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 230/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + Y++L +EY + ++++ Y + ++ Sbjct: 1 MLEKLNIVKQRFDEVNDLIIQPDIIADQKRYVELNKEYKDLRALMNERERYIELTDNLKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD E+ ++A+++ ++E+ LE +I +L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIISD-GSDPEMTEMAKLQQEEAKQELPALEEKIRMMLVPKDPEDAKNVVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y + W ++ S+ GG+KE++ +SG V+ MKFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYVESKGWSHNIVDFSEGTSGGFKEMIFEVSGEDVYGTMKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV+I +D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVEIDPKDVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++ +KSQH+NR +A +VLR+RLY++E + +A R + SG Sbjct: 240 SAVRLTHEPTGLVAQCQDQKSQHKNREKAFRVLRSRLYEIELAKKMEADAAKRNSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+ QGR+TDHRINLTLY L ++ G I II+ L + + S+ Sbjct: 300 DRSAKIRTYNYPQGRVTDHRINLTLYDLSNIVNGDIQKIIDELRLVENTEKLKENSD 356 >gi|319945454|ref|ZP_08019714.1| peptide chain release factor RF1 [Lautropia mirabilis ATCC 51599] gi|319741240|gb|EFV93667.1| peptide chain release factor RF1 [Lautropia mirabilis ATCC 51599] Length = 359 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 160/362 (44%), Positives = 232/362 (64%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ ++NR E+ +++ KL +E+A S ++ +++ Q Sbjct: 1 MKESLRAQLDRMQNRLEELNAQLASEDIGKDISLLKKLNQEHAETSEVLDTYALWKQAGA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + + ++ +E YLLLP+D DD ++ ILEIR Sbjct: 61 DLEAARQMREEPDMREFADEEIADAETRLQATQERIE----YLLLPRDPDDARNAILEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYA R W+ E+LS+S+++ GGY+E++ +SG+ V+ R++ Sbjct: 117 AGTGGDESALFAGDLLRMYLRYAEHRGWQTEILSASESELGGYREVIVQVSGQQVYGRLR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 +ESG HRVQRVP TE+ GR+HTSA TVAV+ D++I +D+RID RASG+GGQH Sbjct: 177 YESGAHRVQRVPVTESQGRIHTSACTVAVMAEAEPTGDIEISPDDLRIDVFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SAVRITH+PTGI+ ++SQH+NR +AM VL RL D + A E SA+RK Sbjct: 237 VNKTESAVRITHLPTGIVAECQDDRSQHRNRDKAMTVLLTRLRDARERERAAETSAHRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ ++ G +D++ + L+ A A++ Sbjct: 297 LVGSGDRSERIRTYNFPQGRLTDHRINLTLYKLQTIIDGDLDELTDALMKARLAELAAER 356 Query: 356 SE 357 +E Sbjct: 357 AE 358 >gi|315638047|ref|ZP_07893232.1| peptide chain release factor RF1 [Campylobacter upsaliensis JV21] gi|315481895|gb|EFU72514.1| peptide chain release factor RF1 [Campylobacter upsaliensis JV21] Length = 355 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 167/357 (46%), Positives = 244/357 (68%), Gaps = 9/357 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ R+ E+ +S++ ++ K L++E + PI+ K Y + + Sbjct: 1 MLAEKLQPFLKRYEELNTLLSDTKIINDIEKMTSLSKEQKNLEPIVLKTKDYFNTLTQIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ +D E +LA+ E+ +E+ E EI LLLPKD +D+K+ LEIRAGT Sbjct: 61 DNKALL----NDPEFSELAKEELKNLEEAKINFEEEIKILLLPKDPNDEKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+LFVGDL + Y RYA LR +K+E++SSS+ GG+KE++ + G G +SR+KFES Sbjct: 117 GGDEASLFVGDLVKAYARYADLRGYKIEIVSSSEGSAGGFKELIMLVKGTGAYSRLKFES 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+P TE+ GR+HTSA TVA++PE +I++ I D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRIPQTESQGRIHTSAITVAIMPEVDDIEIQINPNDLKIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+G++V KSQH+N+ AMK+L+ARLY+++ + S RK Q+GS Sbjct: 237 DSAVRITHIPSGLVVVNQDGKSQHKNKESAMKILKARLYEMQESERLAKESEARKSQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSA 355 GDRSERIRTYNF Q RI+DHRINLTLY+L+ +++G + D++I PL+ HQ++ + Sbjct: 297 GDRSERIRTYNFPQNRISDHRINLTLYRLDAIMEGGLFDELIEPLIAHHQSEGLKEQ 353 >gi|94264416|ref|ZP_01288206.1| Peptide chain release factor 1 [delta proteobacterium MLMS-1] gi|93455173|gb|EAT05391.1| Peptide chain release factor 1 [delta proteobacterium MLMS-1] Length = 354 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 173/353 (49%), Positives = 245/353 (69%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ D+ R ++E R+++ Y L +E++ +S + + Y + + + Sbjct: 3 EQLADIAERKRDLEDRLADPAVSGDPGRYRSLAKEHSHVSRLEELYADYRKTSDDLEANG 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D EI +LA+ E + + + +L+ E+ L+P D +D+K+ +LEIRAGTGG Sbjct: 63 QLLQEE-DDPEILELARQEGEELRQRLAQLDKELRLALVPPDPNDEKNILLEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LFV +LFRMY RYA WKVEVLSSS + GGYKEI+A ISG VFSR+K+ESGVH Sbjct: 122 EASLFVANLFRMYSRYAEQLGWKVEVLSSSATEVGGYKEIIALISGDHVFSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTSA TVAVLPEA E+++ I +++ D R+SG GGQ VNTTDSA Sbjct: 182 RVQRVPETETQGRVHTSAVTVAVLPEAEEVELTINPAELKYDVFRSSGPGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQH+N+ +A++VLRARL D +++ ++ S++RK Q+GSGDR Sbjct: 242 VRVTHLPTGLVVICQDEKSQHKNKAKALQVLRARLLDQMQQQQHDQMSSDRKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRINLT Y+LE V+ G +D++I PL+ +Q + Sbjct: 302 SERIRTYNFPQNRLTDHRINLTSYRLEDVMLGRLDEVIEPLMLHYQTAALKQQ 354 >gi|83319336|ref|YP_424135.1| peptide chain release factor 1 [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|90110051|sp|P71496|RF1_MYCCT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|83283222|gb|ABC01154.1| peptide chain release factor 1 [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 363 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 154/353 (43%), Positives = 232/353 (65%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I+ + + + + +L +E A + ++ K Y + +D Sbjct: 7 EALETMQKRLFQIQKDLEDENILKDIKKFTELNKEKANLEEVVEKFVEYKKAVDHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ DSE+ +LA+IE+ ++ L+ I +LLPKD +D+K+ I+EIR GG Sbjct: 67 AIL-ENEKDSELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDEKNVIIEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASLGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LRA++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYN+ Q R+TDHR+ LTL KL+ V++G ID+ I L+ Q + + Sbjct: 306 SEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQKVAEQ 358 >gi|257452575|ref|ZP_05617874.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_5R] gi|257466434|ref|ZP_05630745.1| peptide chain release factor 1 [Fusobacterium gonidiaformans ATCC 25563] gi|315917590|ref|ZP_07913830.1| peptide chain release factor 1 [Fusobacterium gonidiaformans ATCC 25563] gi|317059115|ref|ZP_07923600.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_5R] gi|313684791|gb|EFS21626.1| peptide chain release factor 1 [Fusobacterium sp. 3_1_5R] gi|313691465|gb|EFS28300.1| peptide chain release factor 1 [Fusobacterium gonidiaformans ATCC 25563] Length = 359 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 164/357 (45%), Positives = 243/357 (68%), Gaps = 7/357 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ +S ++ K+ + A++P+I K Y K + + + Sbjct: 3 DKLEEVVARYEELHTLLSSPEVLNDPKKMIECNKNLNALTPLIEKYKEYKAVKDDVEFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D ++R + Q E+ E+++ ELE E+ LLLPKD +DD + I+EIR G GG Sbjct: 63 ESLK-TEKDEDMRSMMQEELKENEEQMPELEKELKILLLPKDPNDDNNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDND-DGGYKEIVATISGRGVFSRMKFESGV 182 EAA+F GDLFRMY RYA +KWK+E++ D + G KE+ +I G G +S++KFESGV Sbjct: 122 EAAIFAGDLFRMYCRYAERKKWKIEIIEKQDLEGLDGLKEVAFSIQGFGAYSKLKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE++GR+HTS ATVAVLPE +I I +D++IDT R+ G+GGQHVN TD Sbjct: 182 HRVQRVPKTESAGRIHTSTATVAVLPEVEDITEVHIDPKDLKIDTYRSGGAGGQHVNMTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V E+SQ +NR +AMK L ++L ++E ++ +E R+LQ+G+G Sbjct: 242 SAVRITHLPTGVIVQCQDERSQLKNREKAMKHLASKLLEMEVEKQRSEIEGERRLQVGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DR+E+IRTYNF QGRITDHRI LT+++LE L G +D++I+ L+T QA+M+ ++ E Sbjct: 302 DRAEKIRTYNFPQGRITDHRIKLTVHQLEAFLDGDLDEMIDALITFSQAEMLSASGE 358 >gi|283953774|ref|ZP_06371305.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 414] gi|283794815|gb|EFC33553.1| peptide chain release factor 1 [Campylobacter jejuni subsp. jejuni 414] Length = 355 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 175/354 (49%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S + K L++E + PI+ K Y + + ++ Sbjct: 5 KLDPFLKRFEELNSLLSNSDILSDISKMTTLSKEQKNLEPIVLKAKEYLKTLENIEENKA 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ +LA+ E+ +E+ +LE EI LLLPKD +D+K+ LEIRAGTGG E Sbjct: 65 LL----NDPELGELAKEELKTLEELKPKLEEEIKILLLPKDPNDEKNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G +SR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSMGGFKEIIMLVKGTGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAV+PE +I+++I D+++D MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDLKVDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAKESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ ++ G D+II PL+T HQA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLFDEIIEPLITHHQAQTLQEQN 354 >gi|302327519|gb|ADL26720.1| peptide chain release factor 1 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 358 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 160/352 (45%), Positives = 225/352 (63%), Gaps = 6/352 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQD 61 + L ++ E+E + + + + + I + K Y Q + + Sbjct: 4 MKDKAKKLIEKYEELESELGNPDVLGDQARYNKIHKQYKGIEKAVLKAKEYLQMMDDLDE 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +GD SD E+ +A+ E+ IEK++ E+ +E+ L++PKD D ++ LEIR GTG Sbjct: 64 YKAALGD--SDPEMVAMAKAEISEIEKKLPEVTDELQILMVPKDPWDYRNATLEIRGGTG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G E+ALF GDLFRMY Y WK+ + S+ GGYKEI I G V+ +KFESG Sbjct: 122 GDESALFAGDLFRMYRGYCDKMGWKMTIQDLSEGTVGGYKEIRVFIEGDSVYGTLKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVA+LPEA E+DV+I DI +DT R+SG+GGQ++N TD Sbjct: 182 VHRVQRVPETETQGRVHTSAATVAILPEAEEVDVEIREADIHMDTYRSSGAGGQYINKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++V +E+SQ QNRL AM++LR+++ D + E +ANRK +G+G Sbjct: 242 SAVRLTHIPTGVVVSCQTERSQLQNRLHAMEMLRSKILDAVIAKKEKEEAANRKALVGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 DRS +IRTYN+ Q R+TDHRI LT+Y L+ V+ G +D+IIN L A+ + + Sbjct: 302 DRSAKIRTYNYPQNRVTDHRIGLTVYNLDKVVTGDLDEIINGLQMANAQEKL 353 >gi|161507266|ref|YP_001577220.1| peptide chain release factor 1 [Lactobacillus helveticus DPC 4571] gi|260102570|ref|ZP_05752807.1| peptide chain release factor RF1 [Lactobacillus helveticus DSM 20075] gi|172048215|sp|A8YUJ1|RF1_LACH4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|160348255|gb|ABX26929.1| Peptide chain release factor 1 [Lactobacillus helveticus DPC 4571] gi|260083597|gb|EEW67717.1| peptide chain release factor RF1 [Lactobacillus helveticus DSM 20075] Length = 362 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 162/354 (45%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y + K+E D Sbjct: 7 QLEGLVAHYEELQEMMADPEVINDTKRYMEISKEEADLREVVQKYKKYKEDKKEIADNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + +DS++ ++A+ E IEKEI ELE++I L+LPKD +DDK I+EIR GG E Sbjct: 67 IIA-NETDSDLIEMAKEENAEIEKEIPELEDQIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQNWKVSMIDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+DI +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDIDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + + A RK IG+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYESQNQAKYDAKRKNAIGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|289663473|ref|ZP_06485054.1| peptide chain release factor 1 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667596|ref|ZP_06488671.1| peptide chain release factor 1 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 361 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 170/363 (46%), Positives = 245/363 (67%), Gaps = 10/363 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E++ +S+ V D + L+ E + + P+ + + K Sbjct: 1 MTPTLRRKLEALAERREELQHLLSDPDVVNNNDKFRTLSRELSQLEPVAVALEDETRAKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + SD E+R+LA+ E+ A + + EL+ ++ LL+P+D DD + LE+R Sbjct: 61 DLAAAEAM----RSDPEMRELAEEEIAAAQARLEELDAQLALLLVPRDPRDDGNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA + WKVE+ S S + GGYKE+VA + GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGDLFRMYARYAERQGWKVEIESDSPGEHGGYKEVVARVVGRGAYSRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GR+HTSAATVA++PEA +++ + D+++DT R+SG+GGQH Sbjct: 177 FESGTHRVQRVPATESQGRIHTSAATVAIIPEADDVEEIVINPADLKVDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+RITH+P+G++V +E+SQH NR +AMK L+A+L + ER + A + RKL Sbjct: 237 VNKTESAIRITHVPSGVVVECQTERSQHANRDKAMKRLKAQLAEAERSKAAAAEAQTRKL 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+GSGDRS+RIRTY+F QGRITDHR+ LTLY L +++G +D +I LL HQA + Sbjct: 297 QVGSGDRSQRIRTYSFPQGRITDHRVEGLTLYDLPNIIEGDLDALIARLLHEHQADELAR 356 Query: 355 ASE 357 S+ Sbjct: 357 LSD 359 >gi|301165960|emb|CBW25534.1| peptide chain release factor 1 [Bacteriovorax marinus SJ] Length = 357 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 149/359 (41%), Positives = 236/359 (65%), Gaps = 6/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + RF + ++++ D + K++ E + + ++ Y Q K++ Sbjct: 1 MSMFDKLDAVIERFETLTEKLADPTIYDRQDEFKKISSERSNLEEVVVAYKEYRQMKEDI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + D +++++A+ + E +I E+E + LLLPKD DDK+ ++EIRAG Sbjct: 61 DEAKEILK-NEKDEDMKEMAKEVIAENEPQIPEMEERLTILLLPKDPLDDKNVMMEIRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA++FVGD++RMY Y +KVE +S S+ D+ G KEI+ ++SG V+S++K+E Sbjct: 120 AGGDEASIFVGDVYRMYSNYFRDLGFKVEQVSISEGDE-GIKEIIFSVSGEKVYSKLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GRVHTS TVAV+PE +++ D+ + D+RID R+ G+GGQ VNT Sbjct: 179 SGVHRVQRVPKTESQGRVHTSTITVAVMPETDDVEFDLDMNDVRIDVYRSGGAGGQSVNT 238 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+THIPTG +V +KSQ +N+ +A+++L+ R+YD + +A RK +G Sbjct: 239 TDSAVRVTHIPTGTVVANQDQKSQLKNKEKALRILKNRIYDKMLQEKNAAEAAERKGLVG 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +GDRSERIRTYNF QGR+TDHRI LTLY L+ +++G + + + L+ +QA+++ E Sbjct: 299 TGDRSERIRTYNFPQGRLTDHRIGLTLYSLDKIIEGDMTPVTDALIAHNQAELLKGQEE 357 >gi|94271210|ref|ZP_01291905.1| Peptide chain release factor 1 [delta proteobacterium MLMS-1] gi|93450530|gb|EAT01680.1| Peptide chain release factor 1 [delta proteobacterium MLMS-1] Length = 354 Score = 263 bits (673), Expect = 2e-68, Method: Composition-based stats. Identities = 173/353 (49%), Positives = 245/353 (69%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ D+ R ++E R+++ Y L +E++ +S + + Y + + + Sbjct: 3 EQLADIAERKRDLEDRLADPAVSGDPGRYRSLAKEHSHVSRLEELYADYRKTSDDLEANG 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D EI +LA+ E + + + +L+ E+ L+P D +D+K+ +LEIRAGTGG Sbjct: 63 QLLQEE-DDPEILELARQEGEELRQRLAQLDKELRLALVPPDPNDEKNILLEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LFV +LFRMY RYA WKVEVLSSS + GGYKEI+A ISG VFSR+K+ESGVH Sbjct: 122 EASLFVANLFRMYSRYAEQLGWKVEVLSSSTTEVGGYKEIIALISGDHVFSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTSA TVAVLPEA E+++ I +++ D R+SG GGQ VNTTDSA Sbjct: 182 RVQRVPETETQGRVHTSAVTVAVLPEAEEVELSINPAELKYDVFRSSGPGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQH+N+ +A++VLRARL D +++ ++ S++RK Q+GSGDR Sbjct: 242 VRVTHLPTGLVVICQDEKSQHKNKAKALQVLRARLLDQMQQQQHDQMSSDRKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SERIRTYNF Q R+TDHRINLT Y+LE V+ G +D++I PL+ +Q + Sbjct: 302 SERIRTYNFPQNRLTDHRINLTSYRLEDVMLGRLDEVIEPLMLHYQTAALKQQ 354 >gi|222109995|ref|YP_002552259.1| peptide chain release factor 1 [Acidovorax ebreus TPSY] gi|254790879|sp|B9ME05|RF1_DIAST RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|221729439|gb|ACM32259.1| peptide chain release factor 1 [Acidovorax ebreus TPSY] Length = 367 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 166/369 (44%), Positives = 239/369 (64%), Gaps = 17/369 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ + + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLQELDFLLSREDIMADMQQYRSISREHAEVTQVAGRYARYQQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++AQ E+ A E E+ +LE+E+ LLLPKD DD+++ +EIR Sbjct: 61 DLAGAREMLE----DPDMAEMAQEEIHAAETELVQLEDELQRLLLPKDPDDERNAFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------ 171 AGTGG E+ALF GDL RMY RYAA WKVEV+S+++++ GGYKE+V I G+ Sbjct: 117 AGTGGDESALFAGDLARMYTRYAATVGWKVEVMSANESEIGGYKEVVLRIEGQPGTGPSG 176 Query: 172 --VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMR 228 V+ +KFESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT R Sbjct: 177 SGVYGALKFESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEHQAITLNPADLRIDTFR 236 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQH+N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A Sbjct: 237 ASGAGGQHINKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAA 296 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +A RK IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + +++ L A Sbjct: 297 KEAALRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGEVLQALQHAR 356 Query: 348 QAKMIGSAS 356 +A+++ Sbjct: 357 EAELLAELG 365 >gi|118602715|ref|YP_903930.1| peptide chain release factor 1 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|166223599|sp|A1AX02|RF1_RUTMC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118567654|gb|ABL02459.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 363 Score = 263 bits (672), Expect = 2e-68, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 247/355 (69%), Gaps = 7/355 (1%) Query: 8 QICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+++ +S V + KL+ E A ++P+ + Y + +D Sbjct: 8 KLEQLSMRLEEVDVMLSNPKVASDVKKFTKLSIERAQLTPVNQQFQAYLSHHRNLEDAKL 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D +I+ +A+ E+L ++K++ L E+ LLPKD +D ++ I+EIRAGTGG+E Sbjct: 68 MLLE--DDMDIKAMAKEEMLDVKKKLDHLYLELKKSLLPKDPNDSRNIIIEIRAGTGGNE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A++F +LF+MY RY +KW++EV+SSS + GG+KEI+A ISG GV+S++KFESG HR Sbjct: 126 ASIFSSNLFKMYSRYTEKKKWQIEVISSSLGEHGGFKEIIARISGVGVYSKLKFESGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GRVHTSA T+A++PE I+ +I + D+R+DT RASG+GGQHVN T+SA Sbjct: 186 VQRVPETESQGRVHTSACTIAIMPEVENIEEVNINMSDVRVDTFRASGAGGQHVNKTNSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG + +SQH+N+ +A+ VL +R++D++++ E+++ RK IGSGDR Sbjct: 246 VRITHIPTGTVAECQDGRSQHKNKAQALLVLASRIFDLQQQEQHKEQASTRKELIGSGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYN+ QGRITDHRINLTLYKL +++G ++ II PL+ Q + ++ Sbjct: 306 SQRIRTYNYPQGRITDHRINLTLYKLSEIMEGNLNAIIEPLIVEQQTSQLTELND 360 >gi|295425486|ref|ZP_06818179.1| peptide chain release factor RF1 [Lactobacillus amylolyticus DSM 11664] gi|295064825|gb|EFG55740.1| peptide chain release factor RF1 [Lactobacillus amylolyticus DSM 11664] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 158/354 (44%), Positives = 243/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ M++ ++ Y+++++E A + ++ K Y ++E D Sbjct: 7 QLEGLAAHYEELQEMMADPEVINDTKRYMEVSKEEADLREVVQKYKKYKAYQKEIADNKK 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D SD+++ ++A+ E +EKE+ ELE +I L+LPKD +DDK I+EIR GG E Sbjct: 67 IISDE-SDADLVEMAKEENSELEKELPELEEQIRILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYEKYAERQGWKVSMVDSEPTEVGGYKRVAIMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDIDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + ++ A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDYYETQNRDKYDAKRKNAVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LT+ KL+ V+ G +D+II+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTINKLDRVMNGELDEIIDALILYNQTKQLEELAD 359 >gi|306842976|ref|ZP_07475610.1| peptide chain release factor 1 [Brucella sp. BO2] gi|306286904|gb|EFM58429.1| peptide chain release factor 1 [Brucella sp. BO2] Length = 315 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 203/312 (65%), Positives = 254/312 (81%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + KI ++E DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD Sbjct: 2 VGKIRELSDARKEASDLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKD 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 DDK+ ILEIRAGTGG EAALF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+A Sbjct: 62 VADDKNAILEIRAGTGGLEAALFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIA 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 T+SG+GVFS++KFESGVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRID Sbjct: 122 TVSGKGVFSKLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRID 181 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 TMRASG+GGQHVNTTDSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ Sbjct: 182 TMRASGAGGQHVNTTDSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKA 241 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +ERS R+ Q+GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ Sbjct: 242 ESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGDLDELVDALIS 301 Query: 346 AHQAKMIGSASE 357 HQ ++ E Sbjct: 302 DHQTALLAELGE 313 >gi|71281852|ref|YP_270226.1| peptide chain release factor 1 [Colwellia psychrerythraea 34H] gi|119361527|sp|Q47Y94|RF1_COLP3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71147592|gb|AAZ28065.1| peptide chain release factor 1 [Colwellia psychrerythraea 34H] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 164/362 (45%), Positives = 250/362 (69%), Gaps = 7/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++++ L RF E++ +S+ ++ + L++E+ + + S + Y + Sbjct: 1 MKSSVYQKLEVLVERFEEVQALLSDPATISDQEKFRALSKEFKQLDAVTSVFNNYKSAED 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D D ++R++AQ E +K + ++ +E+ LLLP+D +DD +C +EIR Sbjct: 61 DFSTAELMLKD--DDPDMREMAQEEFKDAKKAVADIADELQILLLPRDPNDDNNCFVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+F GDLFRMY RYA + WK+EV++S++++ GGYKE++ ++G GVF MK Sbjct: 119 AGAGGDEAAIFAGDLFRMYSRYAEKKGWKIEVMNSNESEQGGYKELIMKVNGEGVFGHMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TV V+PE E D ++I D+++DT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVVVMPEIPEADAIEINKADLKVDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTG++V ++SQH+NR +AM VL+ARL E ++ +E ++R+ Sbjct: 239 VNKTDSAIRITHIPTGVVVECQEQRSQHKNRAQAMSVLQARLQQAEDEKRRSEEESSRRN 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + SGDRSERIRTYNF QGR++DHRINLTLY+L +++G + ++ P++ +QA ++ Sbjct: 299 LVASGDRSERIRTYNFPQGRMSDHRINLTLYRLNEIMEGSLQLVMEPIMQENQADLLAEL 358 Query: 356 SE 357 +E Sbjct: 359 AE 360 >gi|325911742|ref|ZP_08174149.1| peptide chain release factor 1 [Lactobacillus iners UPII 143-D] gi|325476508|gb|EGC79667.1| peptide chain release factor 1 [Lactobacillus iners UPII 143-D] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ MS+ ++ Y+++++E A + ++ K ++ + E + Sbjct: 7 QLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSEIANNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I H SDS++ D+A+ E +A+E+E+ +LE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-HESDSDLIDMAKEENIALEEEVTKLEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMY++YA + W++ ++ S + + GG+K + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYQKYAENQGWQMSIIDSEETEVGGFKRVAVMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G ++DII+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMAD 359 >gi|312871649|ref|ZP_07731741.1| peptide chain release factor 1 [Lactobacillus iners LEAF 3008A-a] gi|311092874|gb|EFQ51226.1| peptide chain release factor 1 [Lactobacillus iners LEAF 3008A-a] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ MS+ ++ Y+++++E A + ++ K ++ + E + Sbjct: 7 QLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSEIANNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I H SDS++ D+A+ E +A+E+E+ +LE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-HESDSDLIDMAKEENIALEEEVNKLEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMY++YA + W++ ++ S + + GG+K + I+G V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYQKYAENQGWQMSIIDSEETEVGGFKRVAVMITGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G ++DII+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMAD 359 >gi|257462414|ref|ZP_05626828.1| peptide chain release factor 1 [Fusobacterium sp. D12] gi|317060078|ref|ZP_07924563.1| peptide chain release factor 1 [Fusobacterium sp. D12] gi|313685754|gb|EFS22589.1| peptide chain release factor 1 [Fusobacterium sp. D12] Length = 359 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 242/357 (67%), Gaps = 7/357 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ R+ E+ +S ++ K+ + A++P+I K Y K+E + Sbjct: 3 DKLEEVVARYEELHTLLSSPEVLNDPKKMIECNKNLNALTPLIEKYKEYKAVKEEVDFIK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D ++R + Q E+ E ++ ELE E+ LLLPKD +DD + I+EIR G GG Sbjct: 63 ESLK-TEKDEDMRVMMQEELKENEDKMPELEKELKILLLPKDPNDDNNVIVEIRGGAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDND-DGGYKEIVATISGRGVFSRMKFESGV 182 EAA+F GDLFRMY RYA +KWKVE++ D + G KE+ +I G G +S++KFESGV Sbjct: 122 EAAIFAGDLFRMYCRYAERKKWKVEIIEKQDLEGLDGLKEVAFSIQGFGAYSKLKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE++GR+HTS ATVAVLPE +I I +D++IDT R+ G+GGQHVN TD Sbjct: 182 HRVQRVPKTESAGRIHTSTATVAVLPEVEDITEVQIDPKDLKIDTYRSGGAGGQHVNMTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V E+SQ +NR +AMK L ++L ++E ++ +E R+LQ+G+G Sbjct: 242 SAVRITHLPTGVIVQCQDERSQLKNREKAMKHLASKLLEMEIEKQRSEIEGERRLQVGTG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DR+E+IRTYNF QGRITDHRI LT+++LE L G +D++I+ L+T QA+M+ ++ E Sbjct: 302 DRAEKIRTYNFPQGRITDHRIKLTVHQLEAFLDGDLDEMIDALITFSQAEMLSASGE 358 >gi|309803264|ref|ZP_07697361.1| peptide chain release factor 1 [Lactobacillus iners LactinV 11V1-d] gi|309805669|ref|ZP_07699710.1| peptide chain release factor 1 [Lactobacillus iners LactinV 09V1-c] gi|309806347|ref|ZP_07700360.1| peptide chain release factor 1 [Lactobacillus iners LactinV 03V1-b] gi|309809934|ref|ZP_07703782.1| peptide chain release factor 1 [Lactobacillus iners SPIN 2503V10-D] gi|312871919|ref|ZP_07732001.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2062A-h1] gi|312873839|ref|ZP_07733882.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2052A-d] gi|329921112|ref|ZP_08277635.1| peptide chain release factor 1 [Lactobacillus iners SPIN 1401G] gi|308164772|gb|EFO67022.1| peptide chain release factor 1 [Lactobacillus iners LactinV 11V1-d] gi|308165029|gb|EFO67271.1| peptide chain release factor 1 [Lactobacillus iners LactinV 09V1-c] gi|308167331|gb|EFO69497.1| peptide chain release factor 1 [Lactobacillus iners LactinV 03V1-b] gi|308169722|gb|EFO71767.1| peptide chain release factor 1 [Lactobacillus iners SPIN 2503V10-D] gi|311090621|gb|EFQ49022.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2052A-d] gi|311092496|gb|EFQ50858.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2062A-h1] gi|328935019|gb|EGG31508.1| peptide chain release factor 1 [Lactobacillus iners SPIN 1401G] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ MS+ ++ Y+++++E A + ++ K ++ + E + Sbjct: 7 QLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSEIANNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I H SDS++ D+A+ E +A+E+E+ +LE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-HESDSDLIDMAKEENIALEEEVNKLEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMY++YA + W++ ++ + + + GG+K + ISG V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYQKYAENQGWQMSIIDAEETEVGGFKRVAVMISGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G ++DII+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMAD 359 >gi|259501685|ref|ZP_05744587.1| peptide chain release factor RF1 [Lactobacillus iners DSM 13335] gi|302191107|ref|ZP_07267361.1| peptide chain release factor 1 [Lactobacillus iners AB-1] gi|309808088|ref|ZP_07702006.1| peptide chain release factor 1 [Lactobacillus iners LactinV 01V1-a] gi|312874655|ref|ZP_07734679.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2053A-b] gi|315653748|ref|ZP_07906668.1| peptide chain release factor RF1 [Lactobacillus iners ATCC 55195] gi|325913047|ref|ZP_08175420.1| peptide chain release factor 1 [Lactobacillus iners UPII 60-B] gi|259166970|gb|EEW51465.1| peptide chain release factor RF1 [Lactobacillus iners DSM 13335] gi|308168690|gb|EFO70790.1| peptide chain release factor 1 [Lactobacillus iners LactinV 01V1-a] gi|311089885|gb|EFQ48305.1| peptide chain release factor 1 [Lactobacillus iners LEAF 2053A-b] gi|315489110|gb|EFU78752.1| peptide chain release factor RF1 [Lactobacillus iners ATCC 55195] gi|325477727|gb|EGC80866.1| peptide chain release factor 1 [Lactobacillus iners UPII 60-B] Length = 362 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L + E++ MS+ ++ Y+++++E A + ++ K ++ + E + Sbjct: 7 QLESLLAHYEELQEMMSDPEVINDTKKYMEISKEEADLREVVEKYKLFCNDQSEIANNKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I H SDS++ D+A+ E +A+E+E+ +LE EI L+LPKD +DDK I+EIR GG E Sbjct: 67 IIS-HESDSDLIDMAKEENIALEEEVTKLEEEIKILMLPKDPNDDKDIIMEIRGAAGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMY++YA + W++ ++ + + + GG+K + ISG V+S++K+E+G HR Sbjct: 126 ASLFAGDLLRMYQKYAENQGWQMSIIDAEETEVGGFKRVAVMISGDKVYSKLKYENGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE+ GRVHTS ATVAV+PE ++D+D+ +DIR+D R+SG+GGQH+N T SAV Sbjct: 186 VQRIPVTESQGRVHTSTATVAVMPEYEQVDLDLDPKDIRVDVYRSSGAGGQHINKTSSAV 245 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V ++SQ QNR +AM++L++R+YD + A RK +G+GDRS Sbjct: 246 RMTHLPTGIVVAMQDQRSQQQNREKAMQILKSRVYDFYESQNQASYDAKRKESVGTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ERIRTYN+ Q R+TDHRI LTL KL+ ++ G ++DII+ L+ +Q K + ++ Sbjct: 306 ERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELEDIISALVLYYQTKQLEKMAD 359 >gi|313903650|ref|ZP_07837040.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter subterraneus DSM 13965] gi|313466203|gb|EFR61727.1| bacterial peptide chain release factor 1 (bRF-1) [Thermaerobacter subterraneus DSM 13965] Length = 389 Score = 263 bits (672), Expect = 3e-68, Method: Composition-based stats. Identities = 167/345 (48%), Positives = 232/345 (67%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF ++E +++ + L +E A + P++ + + + + ++ + Sbjct: 44 RFDQLERELADPAVAADPRRWQPLAQERAELEPLVEAYRRWREAAADLEAARALLREAEE 103 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 E R EV +E E + LE + LLLP+D D + I+EIRAGTGG EAALF GD Sbjct: 104 ADE-RAYLAAEVERLEGERQALERALRGLLLPRDPRDQRDVIMEIRAGTGGEEAALFAGD 162 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY+RYA + W+ E+++++++D GG+KEI+ +SGRG FSR+K ESGVHRVQRVP T Sbjct: 163 LFRMYQRYAERQGWRTEIMAATESDLGGFKEIIFAVSGRGAFSRLKHESGVHRVQRVPVT 222 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 EA GR+HTS ATVAVLPEA E++V I +D+ IDT ASG GGQHVN T+SAVRITH PT Sbjct: 223 EAGGRIHTSTATVAVLPEAEEVEVQIDPDDLEIDTFAASGPGGQHVNKTESAVRITHKPT 282 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI+V E+SQH+NR RAMK+LRARL D +R E S R+ Q+G+G+RSE+IRTYN Sbjct: 283 GIVVTCQDERSQHKNRARAMKILRARLLDYYTRRQQEELSQQRRSQVGTGERSEKIRTYN 342 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 F + R+TDHRI LTLY+L+ V+ G +D++++ L + +G A Sbjct: 343 FRENRVTDHRIGLTLYRLQEVMDGDLDELLDALAAHDEQVRLGEA 387 >gi|297172147|gb|ADI23128.1| protein chain release factor A [uncultured gamma proteobacterium HF0770_09E07] Length = 359 Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats. Identities = 157/361 (43%), Positives = 239/361 (66%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + ++ + ++ ++S+ ++ KL +EY+ I ++ + Y + + Sbjct: 1 MKQAIRDSLDSIQKKADDLSTQLSDPKLTSDINQLTKLNKEYSEIKDVVENWNRYQELEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +DL T+ D E++ LA E EKE+ ++E EI LLPKD DD+++ +E+R Sbjct: 61 SIEDLDTLAK----DEEMKSLALEEKDQNEKELEKIEAEIMIQLLPKDKDDERNSFVELR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAA+FVGDL+RMY R+A KWKVE + + GG+KEIV + G + +K Sbjct: 117 AGAGGDEAAIFVGDLYRMYGRFAERSKWKVEKIKEIPSGTGGFKEIVIKVIGADTYGNLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTS ATVAVLPE + + D+ + +IR+DT RASG+GGQH Sbjct: 177 FESGVHRVQRVPLTESQGRIHTSTATVAVLPEIDDIEEKDLDMSEIRVDTYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSAVR+TH+P+GI+V ++SQH+N+ +A+ +L +++YD+E++++ E+++ RK Sbjct: 237 VNKTDSAVRLTHLPSGIVVECQDDRSQHKNKAKALGLLSSKIYDIEKQKIEQEKASERKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSE+IRTYNF QGRITDHR+ LTLY ++ + G ID+++N L A+ + Sbjct: 297 LVGTGDRSEKIRTYNFPQGRITDHRLKLTLYNIDSFIDGDIDEMLNSLKAQSNAEKLLEI 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|332876543|ref|ZP_08444305.1| peptide chain release factor 1 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685510|gb|EGJ58345.1| peptide chain release factor 1 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 370 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 221/362 (61%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L +R+ E+ +++ + Y+KLT+EY + I+ Y Q QD Sbjct: 9 DKLEGLVSRYEEVGTLITDPNVISDQKRYVKLTKEYKDLGDIMKARKEYMDSLQTLQDAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ A EK I E+E I LL+P D +DDK+ I+EIR GTGG Sbjct: 69 EMLA-TEDDPEMKEMAREEMAATEKHIPEMEERIKLLLVPADPEDDKNVIMEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +Y ++ WK+ + S ++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFRMYTKYCEMKGWKIAISSFTEGAAGGFKEIIFSVTGEKVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAATVAVLPEAQEFDVEINEGEIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR ++ ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 248 VRARYLWKNPNTGETEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIANRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ Q RITDHRI + L + G I D I+ L A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQSRITDHRIGYNMQNLPSFMDGNIQDCIDQLTVAENAERMKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|86132255|ref|ZP_01050850.1| peptide chain release factor 1 [Dokdonia donghaensis MED134] gi|85817174|gb|EAQ38357.1| peptide chain release factor 1 [Dokdonia donghaensis MED134] Length = 359 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 225/354 (63%), Gaps = 6/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + + L +EY+ + ++ Y + ++ Sbjct: 1 MLEKLQIVKQRFDEVSDLIIQPDIISDQKRYVSLNKEYSDLKALMDVREEYIELTDNFKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A+++ + I ELE +I +L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIIAD-GSDAEMVEMAKMQYEEAKSGIPELEEKIRMMLIPKDPEDAKNVVVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAAL-RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 G EA++F GDL+RMY +Y WK + S+ GG+KEI I+G+ V+ MKFE+ Sbjct: 120 GDEASIFAGDLYRMYTKYVDSVPGWKHSTVDYSEGTSGGFKEIQFEITGQDVYGTMKFEA 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GRVHTSAATV VLPEA E DV I +D+R+D +SG GGQ VNTT Sbjct: 180 GVHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQIEPKDVRVDFFCSSGPGGQSVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+THIPTG++ +KSQH+N+ +A KVLR+RLYD+E + E +A R Q+ S Sbjct: 240 YSAVRLTHIPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDLELAKKQEEDAAKRNSQVSS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 GDRS +IRTYN+ QGR+TDHRI LTLY L+ ++ G I I+ L + + Sbjct: 300 GDRSAKIRTYNYPQGRVTDHRIGLTLYDLQNIINGDIQKILEELRLVENTEKLK 353 >gi|189485187|ref|YP_001956128.1| peptide chain release factor 1 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|238054475|sp|B1GZI5|RF1_UNCTG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|170287146|dbj|BAG13667.1| peptide chain release factor 1 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 356 Score = 263 bits (671), Expect = 4e-68, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 240/355 (67%), Gaps = 6/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ L + F E+E ++S+ + Y +LT+++ + P+ K Y + E + Sbjct: 1 MFLEKLKLLNSIFEEVESKLSDLSVISNQEEYRELTKQHFYLRPLAEKYIRYSKLLNEIK 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + + D+E++++A E + ++ ++ENEI LL+P D ++DK+ I+EIRAGT Sbjct: 61 DAEEL--QKSKDAEMKEIAFAEYNNLIEKRNQMENEIKVLLIPTDPNEDKNIIVEIRAGT 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EAALFVGDL+ MY R+A WK EVL S+ GGYKE+V I+G V+ KFE Sbjct: 119 GGNEAALFVGDLYGMYTRFAERNGWKYEVLGSNPTGLGGYKEVVFEINGGKVWRCFKFER 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TEASGRVHTSAATVAVLPEA E+DV+I +ED+RIDT RASG+GGQH+N T Sbjct: 179 GAHRVQRVPETEASGRVHTSAATVAVLPEAEEVDVEIKMEDLRIDTYRASGAGGQHINKT 238 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSA+RITH+PTG++V E+SQ +NR +A KVLRA++Y+ S+ RK QIGS Sbjct: 239 DSAIRITHLPTGLVVACQDERSQIKNRAKAFKVLRAKIYEQRILEHEMRLSSERKQQIGS 298 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSE+IRTYNF Q RITDHRI ++Y + V+ G + +++N L+ A + Sbjct: 299 GDRSEKIRTYNFPQNRITDHRIGYSVYNITEVMDGNLSELVNKLIKADIESKLKE 353 >gi|300088066|ref|YP_003758588.1| peptide chain release factor 1 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527799|gb|ADJ26267.1| peptide chain release factor 1 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 356 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 162/356 (45%), Positives = 242/356 (67%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ R+ EIE +++ +L +E A++ +I Y + +Q + Sbjct: 1 MLDKLEIIERRYLEIEQAIADPSVATDITLLTRLAKERASMEALIGMYRRYKRNEQSLTE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D E+R+LA+ EV +++E EL ++ LLPKD + +++ I+EIRAGTG Sbjct: 61 AEQML-ETETDEEMRELAKEEVKRLKQEQEELYEQLKIALLPKDPNAERNIIIEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF GDLFRMY RYA L+ WKVE++ ++ G +KE V I G V+SR+K+ESG Sbjct: 120 GDEAKLFAGDLFRMYTRYAELKGWKVEIIDLTEQSGGTFKEAVFEIDGEDVYSRLKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEASGR+HTS ATVAV+P A +I+VDI ED+RID + G+GGQ+VN Sbjct: 180 VHRVQRVPVTEASGRIHTSTATVAVMPVAEDIEVDIKPEDLRIDIYHSGGAGGQNVNKVA 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +AVR+TH+P+G++V E+SQ +NR +AM VL+ARL +E+++ E + NR+ Q+GS Sbjct: 240 TAVRMTHLPSGLVVACQEERSQLKNRQKAMSVLKARLLAMEQEKQDKEMTDNRRAQVGSA 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSE+IRTYN+ Q R+TDHRI L+++ L +++GY+DDII+ L T QA ++ SA Sbjct: 300 DRSEKIRTYNYPQDRLTDHRIGLSVHNLPKIMEGYLDDIIDALATDEQACLLQSAG 355 >gi|313899685|ref|ZP_07833188.1| peptide chain release factor 1 [Clostridium sp. HGF2] gi|312955300|gb|EFR36965.1| peptide chain release factor 1 [Clostridium sp. HGF2] Length = 357 Score = 262 bits (670), Expect = 4e-68, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 224/356 (62%), Gaps = 6/356 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + NR+ EI M V KL E A ++ ++ + Y Sbjct: 1 MSVMIERLEGMVNRYHEINEMMMSPEIVTDSRMLAKLGREQADLTQVVETYTEYKNSVSA 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 +D ++ + D EI+++A++E+ +E +I E ++ LL+PKD +D + I+EIR Sbjct: 61 LEDAKALLLE--DDKEIKEMAKMEIEELEPKIEEYLEKLEILLIPKDPNDSHNAIVEIRG 118 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E +F GDL+RMY ++A + WK+E++ D + GG+ + + G GV+ ++KF Sbjct: 119 AAGGDEGNIFAGDLYRMYSKFAESQGWKIEIVEMDDCEAGGFSLVSFMVKGDGVYGKLKF 178 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP TE+ GR+HTS ATV V PE D DI + D+ ++TMRASG+GGQH+N Sbjct: 179 ESGSHRVQRVPKTESQGRIHTSTATVLVTPEIEPEDFDIDMNDLEMETMRASGAGGQHIN 238 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRI H PTGI V +SQH+NR A+ +R+R+Y+ ++++ E+ R+ +I Sbjct: 239 KTDSAVRIVHKPTGITVKCQDGRSQHENRATALMTIRSRVYEEHQRKLEEEQGIERRNKI 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 G+GDR+E+IRTYN+ Q R+TDHRI T+ +L+ +++G + D+++ LL+A Q + Sbjct: 299 GTGDRAEKIRTYNYPQNRVTDHRIGYTVNQLDRIMEGRMQDLLDALLSADQQAKLA 354 >gi|160916055|ref|ZP_02078262.1| hypothetical protein EUBDOL_02082 [Eubacterium dolichum DSM 3991] gi|158431779|gb|EDP10068.1| hypothetical protein EUBDOL_02082 [Eubacterium dolichum DSM 3991] Length = 357 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 140/356 (39%), Positives = 221/356 (62%), Gaps = 6/356 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + NR+ EI M V KL E A + ++ + Y Q Sbjct: 1 MSVMIERLEGMVNRYHEINEMMMSPEIVSDSKMLAKLGREQADLVQVVETYTEYKNSVQA 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 +D ++ D EI+++A++E+ +E +I ++ LL+PKD +D + I+EIR Sbjct: 61 LEDAKALL--MEDDKEIKEMAKMEIEELEPKIEGYLGKLEILLIPKDPNDSHNAIVEIRG 118 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E +F GDL+RMY +YA + W++E++ D + GG+ + + G GV+ R+KF Sbjct: 119 AAGGDEGNIFAGDLYRMYSKYAESQGWRIEIIEMDDCEAGGFSLVSFMVKGDGVYGRLKF 178 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP TE+ GR+HTS ATV V PE D DI + D+ I+TMRASG+GGQH+N Sbjct: 179 ESGSHRVQRVPKTESQGRIHTSTATVLVTPEIEAEDFDIDMNDLEIETMRASGAGGQHIN 238 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRI H PTGI+V +SQH+NR A+ +R+R+Y+ ++++ E+ R+ +I Sbjct: 239 KTDSAVRIVHKPTGIVVKCQDGRSQHENRATALMTIRSRVYEEHQRKLEEEQGVERRSKI 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 G+GDR+E+IRTYN+ Q R+TDHRI + +L+ +++G + D+++ L +A Q + Sbjct: 299 GTGDRAEKIRTYNYPQNRVTDHRIGYNVNQLDRIMEGRMQDLLDALCSADQQAKLA 354 >gi|296775701|gb|ADH42977.1| protein chain release factor A [uncultured SAR11 cluster alpha proteobacterium H17925_38M03] Length = 358 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 168/357 (47%), Positives = 250/357 (70%), Gaps = 3/357 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++ D+ N+ +E +S + K ++EY+ + II + + E++D Sbjct: 1 MVPINKVMDIINKHMSLEKELSTGDIDPKLFAKKSKEYSNLGSIIDSAKSFVKFDNEKKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D +D E+ DLA+ ++ + K + EN++ LLPKD DDDK+ I+EIRAGTG Sbjct: 61 LENIVKDKTNDPEMIDLAEKDLSELFKRREKWENDLKIFLLPKDEDDDKNAIVEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF+MYE+ + +KW +E+++ S ++ GG+KE++ +++G ++S +K+ESG Sbjct: 121 GLEASLFCADLFKMYEKVCSKKKWNLEIINISKSEAGGFKEVIFSVNGNDIYSYLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE GRVHTSAATVAVLPE E+D++I D+R+D RA G GGQ VNTTD Sbjct: 181 VHRVQRIPETETQGRVHTSAATVAVLPEVEEVDIEIKESDLRVDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIP+G++V+ + KSQH+N+ +A+K+LR+R+Y+ E+++ ERS+NR+ QIGSG Sbjct: 241 SAVRITHIPSGVVVSQQDEKSQHKNKAKALKILRSRVYEAEKRKKDQERSSNRRSQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRINLTL+KLE L G I +++ L Q + + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLEEFLSGDIHEEMNQELRLQEQNLKLKNLN 357 >gi|121593273|ref|YP_985169.1| peptide chain release factor 1 [Acidovorax sp. JS42] gi|166223524|sp|A1W4B8|RF1_ACISJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|120605353|gb|ABM41093.1| bacterial peptide chain release factor 1 (bRF-1) [Acidovorax sp. JS42] Length = 367 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 166/369 (44%), Positives = 239/369 (64%), Gaps = 17/369 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ + + + Y Q++ Sbjct: 1 MKPFLRSQLERYAQRLQELDFLLSREDIMADMQQYRSISREHAEVTQVAGRYARYQQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++AQ E+ A E E+ +LE+E+ LLLPKD DD+++ +EIR Sbjct: 61 DLAGAREMLE----DPDMAEMAQEEIHAAETELVQLEDELQRLLLPKDPDDERNAFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------ 171 AGTGG E+ALF GDL RMY RYAA WKVEV+S+++++ GGYKE+V I G+ Sbjct: 117 AGTGGDESALFAGDLARMYTRYAATVGWKVEVMSANESEIGGYKEVVLRIEGQSGTGPSG 176 Query: 172 --VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMR 228 V+ +KFESG HRVQRVPATE GR+HTSA TVAV+PE E D+RIDT R Sbjct: 177 SGVYGALKFESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEHQAITLNPADLRIDTFR 236 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQH+N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A Sbjct: 237 ASGAGGQHINKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAA 296 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +A RK IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL +++G + +++ L A Sbjct: 297 KEAALRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAIMEGDLGEVLQALQHAR 356 Query: 348 QAKMIGSAS 356 +A+++ Sbjct: 357 EAELLAELG 365 >gi|330995510|ref|ZP_08319414.1| peptide chain release factor 1 [Paraprevotella xylaniphila YIT 11841] gi|329575422|gb|EGG56964.1| peptide chain release factor 1 [Paraprevotella xylaniphila YIT 11841] Length = 370 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 148/362 (40%), Positives = 221/362 (61%), Gaps = 13/362 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L +R+ E+ +++ + Y+KLT+EY + I+ Y Q QD Sbjct: 9 DKLEGLVSRYEEVGTLITDPNVISDQKRYVKLTKEYKDLGDIMKARKEYMDSLQTLQDAK 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E++++A+ E+ A EK I E+E I LL+P D +DDK+ I+EIR GTGG Sbjct: 69 EMLAIE-DDPEMKEMAREEMAAAEKHIPEMEERIKLLLVPADPEDDKNVIMEIRGGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +Y ++ WK+ + S ++ GG+KEI+ +++G V+ +K+ESGVH Sbjct: 128 EAALFAGDLFRMYTKYCEMKGWKIAISSFTEGAAGGFKEIIFSVTGEKVYGTLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+SG+GGQ+VN +S Sbjct: 188 RVQRVPATETQGRVHTSAATVAVLPEAQEFDVEINEGEIKWDTFRSSGAGGQNVNKVESG 247 Query: 244 VRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VR ++ ++ + + Q +N+ RA+ LR +YD E ++ ++ + RK Sbjct: 248 VRARYLWKNPNTGETEEILIECTETRDQPKNKERALARLRTFIYDKEHQKYIDDIANRRK 307 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + +GDRS +IRTYN+ Q RITDHRI + L + G I D I+ L A A+ + Sbjct: 308 TMVSTGDRSAKIRTYNYPQSRITDHRIGYNMQNLPSFMDGNIQDCIDQLTVAENAERMKE 367 Query: 355 AS 356 + Sbjct: 368 SE 369 >gi|150008712|ref|YP_001303455.1| peptide chain release factor 1 [Parabacteroides distasonis ATCC 8503] gi|255014510|ref|ZP_05286636.1| peptide chain release factor 1 [Bacteroides sp. 2_1_7] gi|256841252|ref|ZP_05546759.1| peptide chain release factor 1 [Parabacteroides sp. D13] gi|298375991|ref|ZP_06985947.1| peptide chain release factor 1 [Bacteroides sp. 3_1_19] gi|301311522|ref|ZP_07217449.1| peptide chain release factor 1 [Bacteroides sp. 20_3] gi|166223582|sp|A6LDR9|RF1_PARD8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|149937136|gb|ABR43833.1| peptide chain release factor 1 [Parabacteroides distasonis ATCC 8503] gi|256737095|gb|EEU50422.1| peptide chain release factor 1 [Parabacteroides sp. D13] gi|298267028|gb|EFI08685.1| peptide chain release factor 1 [Bacteroides sp. 3_1_19] gi|300830608|gb|EFK61251.1| peptide chain release factor 1 [Bacteroides sp. 20_3] Length = 369 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 226/361 (62%), Gaps = 13/361 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L +RF E+ +++ + ++KL +EY + I+ S Y + ++ Sbjct: 9 KLDGLVSRFEEVGTLITDPAVIADMKRFVKLNKEYRDLEKIVGARSEYVKVLNGIEEAKA 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+R++A+ E+ + I LE EI LL+P D DDK+ I+EIR GTGG E Sbjct: 69 LL-ESEQDPEMREMAREELDTCNERIPALEEEIKLLLVPADPQDDKNAIVEIRGGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDL+RMY +Y L+ WK+ V S S+ GG+KEI+ T+SG V+ +K+ESGVHR Sbjct: 128 AALFAGDLYRMYVKYCELKGWKISVSSFSEGSSGGFKEIIFTVSGEKVYGTLKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+ G+GGQ+VN +S V Sbjct: 188 VQRVPATETQGRVHTSAATVAVLPEADEFDVEINEGEIKWDTFRSGGAGGQNVNKVESGV 247 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ ++ ++ + + Q +N+ RA+ LR+ +YD E ++ ++ ++ RK Sbjct: 248 RLRYVWKNPITGVSEEILIECTETRDQPKNKERALTRLRSFIYDKEHQKYLDDIASKRKT 307 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D ++ L+ A A+ + + Sbjct: 308 MVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGEIQDCLDHLIVAENAERLKES 367 Query: 356 S 356 Sbjct: 368 E 368 >gi|160872697|ref|ZP_02062829.1| peptide chain release factor 1 [Rickettsiella grylli] gi|159121496|gb|EDP46834.1| peptide chain release factor 1 [Rickettsiella grylli] Length = 363 Score = 262 bits (670), Expect = 5e-68, Method: Composition-based stats. Identities = 157/361 (43%), Positives = 231/361 (63%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + R+ E+ ++ + + L++EY + P++ Y Sbjct: 1 MKTSLFNRLTLIVQRYEELTALLANIEVIKDQNHFRNLSKEYVQLGPLVQCFQQYQTNLD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + D D+ +++LA E+ +++ ELE E+ +LLLP+D +DD++ LEIR Sbjct: 61 RLNQAEHCLKDK--DAIVQELAMEEMKIAQQKKIELEKELEHLLLPQDPNDDRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 A GG EAA+F GDLFRMY RYA + W VE++ + ++ GGYKEI+A ISG V++ +K Sbjct: 119 AAAGGDEAAIFAGDLFRMYSRYAESQHWHVEIIHRNPSEQGGYKEIIARISGTKVYAHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TEA GRVHTS TVA+LPE +D D++IDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPETEAQGRVHTSTCTVAILPEIESMDDITLHPSDLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 V TDSA+RITH+P+G++V E+SQH+NR RAM +L+A+L ++ + E + R+ Sbjct: 239 VQKTDSAIRITHLPSGLVVECQDERSQHKNRARAMSLLQAKLLAAQKAKQRREEAETRRD 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYNF QGR+TDHRINLTLY+L +++G+++ +I L +QA + + Sbjct: 299 LVGTGDRSERIRTYNFPQGRLTDHRINLTLYQLSDIMEGHLEPVIQSLTHEYQADELAAL 358 Query: 356 S 356 Sbjct: 359 G 359 >gi|187734557|ref|YP_001876669.1| peptide chain release factor 1 [Akkermansia muciniphila ATCC BAA-835] gi|238691860|sp|B2UL99|RF1_AKKM8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|187424609|gb|ACD03888.1| peptide chain release factor 1 [Akkermansia muciniphila ATCC BAA-835] Length = 358 Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats. Identities = 156/352 (44%), Positives = 228/352 (64%), Gaps = 6/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTV 65 I + R E+E ++E + K + E+ + ++ + +Q+ D + Sbjct: 7 IEKRRQRLEELETVIAEPDFFNDQKKASEIMREHRRLKELMETWDSLNATEQQLADNQEL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D E+ +LA +E+ +E + +L +++ Y LLP+DT +D+ I+EIRAGTGG EA Sbjct: 67 AK--TDDPELAELAALEIPELEAALEKLRSDVQYSLLPRDTTEDRDAIIEIRAGTGGDEA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +LF GDL RMY+R+A R W+ E L SS +D GG+KE+V I+G VF +K+E GVHRV Sbjct: 125 SLFAGDLLRMYQRFAEERGWRFEHLESSPSDVGGFKEVVCRIAGEEVFRFLKYEGGVHRV 184 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATE GR+HTS ATVAV+PEA E+D++I ED+RI+ R+ G+GGQHVN T+SAV+ Sbjct: 185 QRVPATETQGRIHTSTATVAVMPEAEEVDIEIRPEDLRIEVCRSGGAGGQHVNKTESAVQ 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I HIPTG+ V E+SQ +NR + MK+LRA+L++ +++ A + SA R+ IGSG R E Sbjct: 245 IWHIPTGVYVRCEEERSQMKNREKGMKILRAKLFEAKKREEAEKYSAARRNLIGSGGREE 304 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYNF Q R+TDHRI T + L+ +L G ++D+I L A + + A Sbjct: 305 KIRTYNFPQNRLTDHRIGYTSHNLDGILMGQLEDLIMALQHAEMQERLAEAG 356 >gi|262383596|ref|ZP_06076732.1| peptide chain release factor 1 [Bacteroides sp. 2_1_33B] gi|262294494|gb|EEY82426.1| peptide chain release factor 1 [Bacteroides sp. 2_1_33B] Length = 369 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 227/361 (62%), Gaps = 13/361 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L +RF E+ +++ + ++KL +EY + I+ S Y + ++ Sbjct: 9 KLDGLVSRFEEVGTLITDPAVIADMKRFVKLNKEYRDLEKIVGARSEYVKVLNGIEEAKA 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+R++A+ E+ A + I LE EI LL+P D DDK+ I+EIR GTGG E Sbjct: 69 LL-ESEQDPEMREMAREELDACNERIPALEEEIKLLLVPADPQDDKNAIVEIRGGTGGDE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDL+RMY +Y L+ WK+ V S S+ GG+KEI+ T+SG V+ +K+ESGVHR Sbjct: 128 AALFAGDLYRMYVKYCELKGWKISVSSFSEGSSGGFKEIIFTVSGEKVYGTLKYESGVHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE GRVHTSAATVAVLPEA E DV+I +I+ DT R+ G+GGQ+VN +S V Sbjct: 188 VQRVPATETQGRVHTSAATVAVLPEADEFDVEINEGEIKWDTFRSGGAGGQNVNKVESGV 247 Query: 245 RITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 R+ ++ ++ + + Q +N+ RA+ LR+ +YD E ++ ++ ++ RK Sbjct: 248 RLRYVWKNPITGVSEEILIECTETRDQPKNKERALTRLRSFIYDKEHQKYLDDIASKRKT 307 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + +GDRS +IRTYN+ QGRITDHRIN T+Y L + G I D ++ L+ A A+ + + Sbjct: 308 MVSTGDRSAKIRTYNYPQGRITDHRINYTIYNLSAFMDGEIQDCLDHLIVAENAERLKES 367 Query: 356 S 356 Sbjct: 368 E 368 >gi|300871300|ref|YP_003786173.1| peptide chain release factor 1 [Brachyspira pilosicoli 95/1000] gi|300689001|gb|ADK31672.1| peptide chain release factor 1 [Brachyspira pilosicoli 95/1000] Length = 358 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 160/358 (44%), Positives = 243/358 (67%), Gaps = 3/358 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ ++N + +I +++++ D L ++ + I I+++ +E + Sbjct: 1 MSIIDKLSSVENTYNDIVDKLNDANIKDNRVIQDLMKKKSEIEDIVNEYKKLKTVLKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + ++ ++D E++++A +E+ + ++ + N++ LLLPKD +D K+ I+EIR GT Sbjct: 61 DANEMLNHSDTDKELKNMALLEIEELNQKKENIINDLRLLLLPKDKNDGKNIIVEIRVGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG E+ALFVGDLFRMY R+ +K+E++ S + GGYKE++ ++SG+ + +KFES Sbjct: 121 GGDESALFVGDLFRMYSRFIERANFKMEIIDISPTELGGYKEVIFSVSGKNAYRTLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+PATE+ GR+HTSA+TVA++PEA E DV I EDIR+D R+SG GGQ VNTT Sbjct: 181 GTHRVQRIPATESGGRIHTSASTVAIMPEAEESDVIIKDEDIRVDIFRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQH+N+ +A+KVLRAR+Y+ E + R+ +IGS Sbjct: 241 DSAVRITHLPTGLVVQCQDEKSQHKNKAKALKVLRARIYEKEEAERKAKEDKERRDKIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF Q R+TDHRIN+TLYKL+ + G I +I + L Q +++ S S+ Sbjct: 301 GDRSERIRTYNFPQNRVTDHRINVTLYKLDRFMDGEITEITDALFKKEQEELLASYSD 358 >gi|332290785|ref|YP_004429394.1| peptide chain release factor 1 [Krokinobacter diaphorus 4H-3-7-5] gi|332168871|gb|AEE18126.1| peptide chain release factor 1 [Krokinobacter diaphorus 4H-3-7-5] Length = 359 Score = 262 bits (669), Expect = 6e-68, Method: Composition-based stats. Identities = 158/354 (44%), Positives = 229/354 (64%), Gaps = 6/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF EI + + + Y++L +EY+ + ++ +Y + + ++ Sbjct: 1 MLEKLQIVKQRFDEISDLIIQPDIITDQKRYVQLNKEYSDLKALMEVREVYIELSENLKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+E+ ++A+++ + I ELE +I +L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIIAD-GSDAEMVEMAKMQYEEAKTGIPELEEKIRMMLIPKDPEDAKNVVVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAAL-RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 G EA++F GDL+RMY +Y WK + S+ GG+KEI I+G+ V+ MKFE+ Sbjct: 120 GDEASIFAGDLYRMYTKYVDSVPGWKHSTVDYSEGTSGGFKEIQFEITGQDVYGTMKFEA 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GRVHTSAATV VLPEA E DV I +D+R+D +SG GGQ VNTT Sbjct: 180 GVHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQIEPKDVRVDFFCSSGPGGQSVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 SAVR+THIPTG++ +KSQH+N+ +A KVLR+RLYD+E + E +A R Q+ S Sbjct: 240 YSAVRLTHIPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDMELAKKQEEDAAKRNSQVSS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 GDRS +IRTYN+ QGR+TDHRI LTLY L+ ++ G I I+ L + + Sbjct: 300 GDRSAKIRTYNYPQGRVTDHRIGLTLYDLQNIVNGDIQKILEELRLVENTEKLK 353 >gi|296121187|ref|YP_003628965.1| peptide chain release factor 1 [Planctomyces limnophilus DSM 3776] gi|296013527|gb|ADG66766.1| peptide chain release factor 1 [Planctomyces limnophilus DSM 3776] Length = 363 Score = 262 bits (669), Expect = 7e-68, Method: Composition-based stats. Identities = 160/349 (45%), Positives = 233/349 (66%), Gaps = 5/349 (1%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + RF E+E ++ + V +++ E+ +S I S + ++ + + T+ Sbjct: 9 LQAKLARFEELEAQLQDPEVLADVSKMLEIQREHGGLSKIASTVREFNTLQDDLLAAETM 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D E +++AQ E+ ++ L+ E+ ++ D+ S I+EIRAGTGG EA Sbjct: 69 LAEATDD-ETKEIAQAEIDELKPRFEPLKTELEDMVTAGDSLTRGSLIMEIRAGTGGDEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF DL+ MY RY L+ WK EV+ + ++ GG KE+V TI+G G + R++FESG HRV Sbjct: 128 ALFARDLYEMYTRYVDLQGWKYEVMELTTSELGGLKEVVITITGSGAYHRLQFESGGHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GRVHTSAATVAV+ EA+EIDV+I ED+RIDTMRA G GGQ VN T+SAVR Sbjct: 188 QRVPETETQGRVHTSAATVAVMAEASEIDVEIRDEDLRIDTMRAGGPGGQKVNKTESAVR 247 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIP+G++V EKSQH+N+ +A++VLR+RL ++ + R+ R+ +GSGDRSE Sbjct: 248 ITHIPSGLVVRIQDEKSQHKNKAKALRVLRSRLMELRESQAHAVRAEQRRTLVGSGDRSE 307 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 RIRTYNF Q R+TDHRI LT+YKL+ ++QG +D++INP+L + + + Sbjct: 308 RIRTYNFPQNRLTDHRIGLTVYKLDQIMQGNLDELINPILAFDREERLK 356 >gi|209527112|ref|ZP_03275626.1| peptide chain release factor 1 [Arthrospira maxima CS-328] gi|209492452|gb|EDZ92793.1| peptide chain release factor 1 [Arthrospira maxima CS-328] Length = 371 Score = 262 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 141/358 (39%), Positives = 230/358 (64%), Gaps = 8/358 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ LR+++ D + ++ + +++ +++ + + E Sbjct: 8 DKLKSVEQTFQELTLRLADPEIATDPDEFQRVAKTRSSLEDVVNAYQDWKTTQTELAGAK 67 Query: 64 TVIGDHNSDSE---IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + +D E ++++A +EV + +++ELE + LLLP+D +DDK+ +LEIRAGT Sbjct: 68 QILRETGNDPELKEMKEMAALEVEELTTKLQELETRLKILLLPQDPNDDKNIMLEIRAGT 127 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+++ GDL RMY RYA + W+V +LS S D GG+KE + I G V+S++KFE+ Sbjct: 128 GGDEASIWAGDLVRMYSRYAETKGWRVRLLSESLADMGGFKEAILEIQGARVYSQLKFEA 187 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN Sbjct: 188 GVHRVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVQIDPKDIEMTTARSGGAGGQNVNKV 247 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H PTGI + + E+SQ +NR RAM++LRA+LY+ + + + ++ R+ Q+G+ Sbjct: 248 ETAVDLFHKPTGIRVFCTEERSQLKNRERAMQILRAKLYEAKLREQQDAVTSMRRSQVGT 307 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 G RSE+IRTYN+ R+TDHR+ L VL+G I D+I + Q + + +E Sbjct: 308 GSRSEKIRTYNYKDNRVTDHRLGHNFS-LAPVLEGGIGDLIQACIIQDQQERLAQLAE 364 >gi|120434841|ref|YP_860527.1| peptide chain release factor 1 [Gramella forsetii KT0803] gi|166223562|sp|A0LYL5|RF1_GRAFK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|117576991|emb|CAL65460.1| peptide chain release factor 1 [Gramella forsetii KT0803] Length = 358 Score = 262 bits (668), Expect = 7e-68, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 230/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +K RF E+ + + + YI+L +EY + ++ + Y Q+ Sbjct: 1 MIERLNIVKQRFDEVNDLIIQPDVISDQKRYIELNKEYKDLRALMDEREKYISITDNIQE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD E+ ++A++++ + ++ LE++I +L+PKD +D K+ ++EIRAGTG Sbjct: 61 AEEIISD-GSDPEMTEMAKLQLDEAKGQLPALEDKIRMMLIPKDPEDGKNIVMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL+RMY +Y R W ++ S+ GG+KE++ +SG V+ MKFE+G Sbjct: 120 GDEASIFAGDLYRMYTKYVEGRGWSHNIVDFSEGTSGGFKEMIFEVSGDDVYGTMKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV+I +++RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVEIDPKEVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG++ +KSQH+N+ +A +VLR+RLY++E + +A R + SG Sbjct: 240 SAVRLTHEPTGLVAQCQDQKSQHKNKEKAFRVLRSRLYEMELAKKMEADAAKRNSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++Q R+TDHRINLTLY L ++ G I II+ L A + + S+ Sbjct: 300 DRSAKIRTYNYAQSRVTDHRINLTLYDLSNIINGDIQKIIDELQLAENTEKLKENSD 356 >gi|257457982|ref|ZP_05623141.1| peptide chain release factor 1 [Treponema vincentii ATCC 35580] gi|257444695|gb|EEV19779.1| peptide chain release factor 1 [Treponema vincentii ATCC 35580] Length = 355 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 252/356 (70%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L R+ E+E + + + + Y + E+A +S ++ + + Y + +QE Sbjct: 1 MKEKLESLSVRWKELEEEIQDPALIKNQNRYKEAMREHAYLSKLMEEYAQYLRFEQEIIQ 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D E++++A+ E+ +E ++ + EN + LL+P D ++K+ I+EIR GTG Sbjct: 61 TRAMMQEE-TDHELKEMAREELHNLEAQLEQSENNLKVLLIPPDPLEEKNIIMEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL +MY YA L+ WK E+LSS++ + GG+KE+ +ISG+ V+ +++ESG Sbjct: 120 GEEAALFAADLLKMYTHYAELKNWKYEILSSNETELGGFKEVTLSISGKYVYGSLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE SGR+HTSA TVAVLPEA E ++ I ED+RID MRA G GGQ VNTTD Sbjct: 180 VHRVQRVPETEGSGRIHTSAVTVAVLPEAEETEIVIKQEDLRIDVMRAGGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG++V EKSQ +N+ +AM+VLR+RLYD+E + +ER+ +RK Q+GSG Sbjct: 240 SAVRITHIPTGLVVICQDEKSQIKNKAKAMRVLRSRLYDMEEAKKQSERAEDRKNQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYN+ Q R+TDHRINLTLYKL+ ++QG +++I+ L A + +M+ + + Sbjct: 300 DRSERIRTYNYPQNRVTDHRINLTLYKLDTIMQGDLNEIVEALCIAAREQMMKAQA 355 >gi|162457313|ref|YP_001619680.1| peptide chain release factor RF-1 [Sorangium cellulosum 'So ce 56'] gi|229470353|sp|A9G9L1|RF1_SORC5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|161167895|emb|CAN99200.1| peptide chain release factor RF-1 [Sorangium cellulosum 'So ce 56'] Length = 364 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 235/358 (65%), Gaps = 8/358 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 L ++ ++ RF E+E M + A +L E I P++ + ++ Sbjct: 1 MLPIAKLEAVQRRFQELEHLMCSPAVLAAPAELQRLNRERTEIEPVVVAFARMRDVERRI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + SD ++ +LAQ E+ +E E L E+ LLLPKD +D ++ ++EIR+G Sbjct: 61 AEDREAL----SDPDLSELAQAELPELELERERLAAELEVLLLPKDPNDTRNTVIEIRSG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DLFRM RYA ++WKVEVL+ S+ GGYKE+ A I+G+ V+S +++E Sbjct: 117 EGGEEAALFAADLFRMLCRYAETKRWKVEVLNLSEASAGGYKEVAALITGQDVYSHLRYE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP+TE GR+HTS ATVAVLPEA E+DV I +D+ I + G GGQ VNT Sbjct: 177 GGVHRVQRVPSTETQGRIHTSTATVAVLPEADEVDVHIDEKDLEISIAASGGPGGQGVNT 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAV+I H+PTG++V E+SQ +N+ +AMKVLR+RL ++E++R +SA R+ +G Sbjct: 237 TNSAVQIKHLPTGMIVKCQDERSQLKNKAKAMKVLRSRLLELEQRRQEEAQSAERRTMVG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+R++++RTYNF Q R+TDHRI LTL+KL+ +++G ++++I L T QA+++ Sbjct: 297 TGERAQKVRTYNFPQNRVTDHRIGLTLHKLDKIIEGDLEELIGALRTHRQAELLRRGG 354 >gi|126663551|ref|ZP_01734548.1| peptide chain release factor 1 [Flavobacteria bacterium BAL38] gi|126624499|gb|EAZ95190.1| peptide chain release factor 1 [Flavobacteria bacterium BAL38] Length = 357 Score = 262 bits (668), Expect = 8e-68, Method: Composition-based stats. Identities = 151/354 (42%), Positives = 228/354 (64%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF EI + + + Y++L +EY + ++ K Y ++ Sbjct: 1 MLDRLQYVKQRFDEISDLIIQPDVIADQKRYVQLNKEYKDLKGLVEKREEYIALDGNIKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I D SD+E+ ++A++++ + + +LE EI ++L+PKD +D K+ ++EIRAGTG Sbjct: 61 ANEIIAD-GSDAEMVEMAKMQLDEAKDRLPQLEEEIKFMLIPKDPEDAKNVMVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y R W+ V+ S+ GG+KE++ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCEARGWRTSVVDISEGTSGGFKEVIFEVTGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV I + D+R+D +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQIDMNDVRVDFFCSSGPGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++ +KSQH+N+ +A+ VLR+RLY+ E E + R Q+ SG Sbjct: 240 SAVRLTHIPTGLVAQCQDQKSQHKNKDKALDVLRSRLYEKELAIKQAEDATKRSSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRS +IRTYN+SQGR+TDHRI L ++ ++ V+ G I ++ L + + + Sbjct: 300 DRSAKIRTYNYSQGRVTDHRIGLDVFDMDGVMNGKIQKFVDELQLVNNMEKLKE 353 >gi|298245470|ref|ZP_06969276.1| peptide chain release factor 1 [Ktedonobacter racemifer DSM 44963] gi|297552951|gb|EFH86816.1| peptide chain release factor 1 [Ktedonobacter racemifer DSM 44963] Length = 358 Score = 262 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 148/358 (41%), Positives = 223/358 (62%), Gaps = 7/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 ++ L R+ E+ M++ + + E + +S ++ K ++ Sbjct: 1 MDLMDKLATLATRYEELNNLMAQPDVLTDISLLQRYGREQSELSTVVEKYHELIDTDKQI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ + E+RD+A E+ ++ +L ++ LLPKD D+K+ ++ I+ G Sbjct: 61 KEAQEMYDSEEG--ELRDMAFEELEQLKARKEQLLEDVQVALLPKDIMDEKNAVVTIQGG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DLFRMY RYA R+WK+E+L +D + GG+K+I I G+G +SRMK+E Sbjct: 119 AGGDEAALFAADLFRMYSRYADGRRWKIEILDGNDTEQGGFKDITFVIRGKGAYSRMKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 G HRVQRVP+TEA+GR+HTS A V VLPE +I +++ DIR+D R++G GGQ VN Sbjct: 179 GGTHRVQRVPSTEANGRIHTSTAKVIVLPEADDDIQIEVKDADIRVDVYRSTGHGGQSVN 238 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTG++V EKSQ +N+ +A+ VL++RL+D+E + E R+ Q+ Sbjct: 239 TTDSAVRITHLPTGLVVTCQDEKSQLKNKQKALNVLKSRLWDLEEAKRQEELGKARRSQV 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GDRSE+IRTYNF Q R+TDHRI LT + L +L G +D+ I+ L+T QA+ + Sbjct: 299 QTGDRSEKIRTYNFPQDRVTDHRIGLTRHNLPGILDGSLDEFIDNLITVDQAEKLQGM 356 >gi|113476549|ref|YP_722610.1| peptide chain release factor 1 [Trichodesmium erythraeum IMS101] gi|119361636|sp|Q110D7|RF1_TRIEI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110167597|gb|ABG52137.1| bacterial peptide chain release factor 1 (bRF-1) [Trichodesmium erythraeum IMS101] Length = 369 Score = 262 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 235/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ + E+ LR+++ + KL + +++ +++ + ++E D Sbjct: 8 DKLKSVEQTYNELTLRLADPDVAKDPSEFQKLAKARSSLEEVVNCYVEWKNAQEELADAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E++++A++EV +E ++ LEN++ LLP+D +DDK+ +LEIRAGTGG Sbjct: 68 EILKEAVGDLEMQEMAKVEVEDLEAKLESLENQMKIALLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RY+ + WKV +LS S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYSENQSWKVSLLSESLADMGGFKEAILEIKGDHVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE +++V+I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVEIDQKDIELSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + E S+ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTQERSQLQNRERAMQILRAKLYEIKLQEQQAEVSSIRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+N L +L+G I+++I +T Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLNQNFS-LVPLLEGDIENVIQACITQDQQERLQELA 360 >gi|296127053|ref|YP_003634305.1| peptide chain release factor 1 [Brachyspira murdochii DSM 12563] gi|296018869|gb|ADG72106.1| peptide chain release factor 1 [Brachyspira murdochii DSM 12563] Length = 358 Score = 262 bits (668), Expect = 9e-68, Method: Composition-based stats. Identities = 164/358 (45%), Positives = 240/358 (67%), Gaps = 3/358 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ ++N + +I +++++ D L ++ + I I+ + +E Sbjct: 1 MSIIDKLSLVENTYEDIVQKLNDANIKDNRVIQDLMKKKSEIEDIVEEYRKLKTVLKEID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + +I + +D +++++A E+ + ++ ++ N + LLLPKD +D K+ I+EIR GT Sbjct: 61 DSNEMINNPETDKDLKEMALAEIEELNQKKEDIINSLRLLLLPKDKNDGKNIIIEIRVGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG E+ALFVGDLFRMY R+ K+E++ +S + GGYKE++ ++SG+ + +KFES Sbjct: 121 GGDESALFVGDLFRMYSRFIERANLKMEIIDTSPTELGGYKEVIFSVSGKNAYRALKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+PATE+ GR+HTSA+TVAV+PEA E DV I EDIR+D R+SG GGQ VNTT Sbjct: 181 GTHRVQRIPATESGGRIHTSASTVAVMPEAMESDVVIKDEDIRVDIFRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQH+N+ +A+KVLRAR+Y+ E + + R+ QIGS Sbjct: 241 DSAVRITHLPTGLVVQCQDEKSQHKNKAKALKVLRARIYEKEEAERKAKEAKERREQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF Q R+TDHRINLTLYKL+ + G I +I + L Q M+ S S+ Sbjct: 301 GDRSERIRTYNFPQNRVTDHRINLTLYKLDRFMDGEITEITDALFKKEQEDMLASYSD 358 >gi|327404087|ref|YP_004344925.1| peptide chain release factor 1 (bRF-1) [Fluviicola taffensis DSM 16823] gi|327319595|gb|AEA44087.1| bacterial peptide chain release factor 1 (bRF-1) [Fluviicola taffensis DSM 16823] Length = 359 Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats. Identities = 156/350 (44%), Positives = 233/350 (66%), Gaps = 5/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + RF E+ +++ + Y+KL +EY + + + Y + Sbjct: 7 KLEAIHFRFIEVGKMITDPEIISDMERYVKLNKEYRDLEEVDAAYKSYKNVLDNLKSSKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D E+R++A++E+ +E++ +E EI LL+PKD +DDK+ I+E+RAGTGG E Sbjct: 67 ML-EVETDPEMREMAKMEINELEQQRPIIEEEIKVLLIPKDPEDDKNAIIELRAGTGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +FV D++RMY Y W E+++SS+ GYKE+ +ISG G++ +KFESGVHR Sbjct: 126 ACIFVEDIYRMYTMYFKEMGWAYEIVNSSEGSAKGYKEVSMSISGAGIYGMLKFESGVHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTSA TVAVLPEA E+D ++ + D+R DT RASG+GGQH+N T+SA+ Sbjct: 186 VQRVPETESQGRVHTSAITVAVLPEAEEVDFELDMNDVRKDTFRASGAGGQHINKTESAI 245 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG +V +SQH+N +A+ VLR+RLY E R+ ER+A+RK + +GDRS Sbjct: 246 RLTHIPTGTVVECQDGRSQHKNLAQAISVLRSRLYQAELDRVHQERAAHRKTLVSTGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IRTYN+ QGRITDHRIN T+Y L + G + ++I+ L A A+ + Sbjct: 306 AKIRTYNYPQGRITDHRINKTIYNLSAFMNGDVQEMIDALKMAENAEKMK 355 >gi|149369846|ref|ZP_01889697.1| peptide chain release factor 1 [unidentified eubacterium SCB49] gi|149356337|gb|EDM44893.1| peptide chain release factor 1 [unidentified eubacterium SCB49] Length = 358 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 158/357 (44%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +KNRF E+ + + + YI LT+EY ++ ++ K Y + + Sbjct: 1 MLEKLQIVKNRFDEVSDLIIQPDVISDQKQYISLTKEYKDLNALMKKREAYIMATEHIAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D SD+++ ++A++++ + I LE EI +L+PKD +D K+ ++EI+AGTG Sbjct: 61 AEEILAD-GSDADMVEMAKMQMDEAKSNIAVLEEEIKLMLIPKDPEDAKNAVMEIKAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDL RMY +Y + WK V+ S+ GGYK I + G V+ +KFE+G Sbjct: 120 GDEASIFAGDLHRMYTKYCESKGWKTSVVDFSEGTSGGYKAIQMEVEGDDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV V PEA E DV I ++D+RID +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVFPEAEEFDVHIEMKDVRIDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++ +KSQH+N+ +A KVLR+RLYD+E + E + R Q+ SG Sbjct: 240 SAVRLTHVPTGLVAQCQDQKSQHKNKEKAFKVLRSRLYDLELAKKQAEDALKRGSQVTSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+SQGR+TDHRINLTLY L ++ G I II+ L + + + + Sbjct: 300 DRSAKIRTYNYSQGRVTDHRINLTLYDLSNIIDGDIQKIIDELQLVDNTERLKESGD 356 >gi|237756512|ref|ZP_04585042.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691328|gb|EEP60406.1| peptide chain release factor 1 [Sulfurihydrogenibium yellowstonense SS-5] Length = 360 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 159/352 (45%), Positives = 244/352 (69%), Gaps = 5/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ + ++E M++ + K+ +E+ +S I++ + Y + ++ +++ Sbjct: 8 QLEGIEEKLKKLEELMADPEVLKDQSKIQSIAKEHKELSEILNLYNEYKKVNRQIEEVKQ 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D ++R+LA+ E+ +++K +LE +I LLPKD +D+++ ILEIR G GG E Sbjct: 68 LLNSTPDD-DLRELAEEELESLKKHREDLEKKIEIALLPKDPNDERNVILEIRQGAGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF +LFRMY+RYA WK E+LS + GG KE++A I G+G +SR+K+ESGVHR Sbjct: 127 ASLFAAELFRMYQRYAERHGWKTEILSLHPTEKGGIKEVIALIKGKGAYSRLKYESGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+SGR+HTS TVAVLPEA E+D++I E++RI+TMRA G+GGQHVNTTDSAV Sbjct: 187 VQRVPETESSGRIHTSTVTVAVLPEAEEVDIEIKPEELRIETMRAGGAGGQHVNTTDSAV 246 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V E+SQ QN+++AM++LRARL D + + + RK Q+G+G+RS Sbjct: 247 RITHIPTGMVVTCQDERSQLQNKMKAMQILRARLKDYYERLEKEKIAKERKEQVGTGERS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 E+IRTYNF Q R+TDHR+N T Y++ ++ G +D+II+ L+ + + Sbjct: 307 EKIRTYNFPQNRVTDHRVNYTSYRINDIMDGDLDEIIDVLIAKENEEKLAKL 358 >gi|313681233|ref|YP_004058971.1| bacterial peptide chain release factor 1 (brf-1) [Sulfuricurvum kujiense DSM 16994] gi|313154093|gb|ADR32771.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfuricurvum kujiense DSM 16994] Length = 355 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 172/358 (48%), Positives = 254/358 (70%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ NR+ E+ +S + +L++E ++I I++K + Y + ++ + Sbjct: 1 MLSDKLTPFINRYNELTELLSSPDIGNDIKRMTELSKEQSSIQAIVNKATEYKKLLEDIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D+E+ +LA+ E+ +E + LE EI LL+P D +D ++ +E+RAGT Sbjct: 61 ENKSLAF----DAELGELAKEELRTLEPMVEPLEEEIKKLLIPADPNDKRNIYIELRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+FVGDLF Y RYA ++ WK+E++SSS +D GGYKEI+A I G V+SR+K+E+ Sbjct: 117 GGDEAAIFVGDLFNAYVRYADVKGWKIELMSSSPSDAGGYKEIIALIKGEQVYSRLKYEA 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE+ GRVHTSA TVAV+PE +++V I D++ID MR+SGSGGQ VNTT Sbjct: 177 GTHRVQRVPATESQGRVHTSAITVAVMPEVDDVEVTINENDLKIDVMRSSGSGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+VT EKSQH+N+ +AMK+L+AR+Y+++ + + + RK Q+G+ Sbjct: 237 DSAVRITHLPTGIVVTNQDEKSQHKNKDKAMKILKARIYEMQMEEAKVKEMSERKEQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RI+DHRINLTLY+L+ ++QG + DDII PL+ QA+++ A Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLDEIMQGGLMDDIIEPLIADAQAQIMERAG 354 >gi|332529974|ref|ZP_08405924.1| peptide chain release factor 1 [Hylemonella gracilis ATCC 19624] gi|332040447|gb|EGI76823.1| peptide chain release factor 1 [Hylemonella gracilis ATCC 19624] Length = 369 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 167/369 (45%), Positives = 236/369 (63%), Gaps = 17/369 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +Q+ R E+ +S + ++ L+ E+ ++ I + + Y Q++ Sbjct: 1 MKDFLRQQLERYAQRLDELNFLLSREDIMGDMKQFLALSREHNEVTAIAGRYAQYRQRET 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + ++ D+AQ E+ A ++ LE+E+ LLLPKD DD ++ LEIR Sbjct: 61 DLSSAREMLAE----PDMTDIAQEEITAAMADLVRLEDELQRLLLPKDPDDARNAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------ 171 AGTGG E+ALF DL RMY RYA R WK E++S S ++ GGYKE+V I G Sbjct: 117 AGTGGDESALFAADLLRMYTRYADQRGWKTEIMSESPSELGGYKEVVLRIDGGNAESPSG 176 Query: 172 --VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMR 228 V+ ++FESG HRVQRVPATE GR+HTSA TVAVLPE E + I ++RIDT R Sbjct: 177 LGVYGELRFESGGHRVQRVPATETQGRIHTSACTVAVLPEPDEQEAVQINPAELRIDTFR 236 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQH+N TDSAVRITH+PTGI+ ++SQH+N+ +A++VL AR+ + ER A Sbjct: 237 ASGAGGQHINKTDSAVRITHLPTGIVAECQDDRSQHRNKAKALQVLAARIQEKERSERAA 296 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +A R+ IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL V++G +DD++ L A Sbjct: 297 KDAATRRGLIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLSQVMEGALDDVVQALRHAR 356 Query: 348 QAKMIGSAS 356 +A+++ Sbjct: 357 EAELLAELE 365 >gi|225621133|ref|YP_002722391.1| peptide chain release factor 1 [Brachyspira hyodysenteriae WA1] gi|254790865|sp|C0QWA1|RF1_BRAHW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|225215953|gb|ACN84687.1| peptide chain release factor 1 [Brachyspira hyodysenteriae WA1] Length = 358 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 242/358 (67%), Gaps = 3/358 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ ++ + +I +++++ D L ++ + I I+ + +E + Sbjct: 1 MSIIDKLSLVEKTYEDIVQKLNDANIKDNRVIQDLMKKKSEIEDIVEEYKKLKVVLKEIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + ++ + ++D E++D+A +E+ + ++ ++ N + LLLPKD +D K+ I+EIR GT Sbjct: 61 ESNEMVNNPDTDKELKDMALLEIEDLNQKKEDIVNGLRLLLLPKDKNDGKNIIVEIRVGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG E+ALFVGDLFRMY R+ K+E++ +S + GGYKE++ ++SG+ + +KFES Sbjct: 121 GGDESALFVGDLFRMYTRFIERTNLKMEIIDTSPTELGGYKEVIFSVSGKDAYRTLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQR+PATE+ GR+HTSA+TVAV+PEA E DV I EDIR+D R+SG GGQ VNTT Sbjct: 181 GTHRVQRIPATESGGRIHTSASTVAVMPEAMESDVVIKDEDIRVDIFRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V EKSQH+N+ +A+KVLRAR+Y+ E + + R+ QIGS Sbjct: 241 DSAVRITHLPTGLVVQCQDEKSQHKNKAKALKVLRARIYEKEEAERKAKEAKERREQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF Q R+TDHRIN+TLYKL+ + G I +I + L Q M+ S S+ Sbjct: 301 GDRSERIRTYNFPQNRVTDHRINVTLYKLDRFMDGEITEITDALFKKEQEDMLASYSD 358 >gi|254690018|ref|ZP_05153272.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870] Length = 337 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 206/324 (63%), Positives = 255/324 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 14 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 74 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 133 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 134 GGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 194 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 253 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 254 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 313 Query: 301 DRSERIRTYNFSQGRITDHRINLT 324 DRSERIRTYNF QGR+TDHRINLT Sbjct: 314 DRSERIRTYNFPQGRVTDHRINLT 337 >gi|146300064|ref|YP_001194655.1| peptide chain release factor 1 [Flavobacterium johnsoniae UW101] gi|189039972|sp|A5FHI8|RF1_FLAJO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146154482|gb|ABQ05336.1| bacterial peptide chain release factor 1 (bRF-1) [Flavobacterium johnsoniae UW101] Length = 358 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 156/357 (43%), Positives = 230/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF EI + + + Y L +EY I ++ K Y + Sbjct: 1 MLDRLQYVKQRFDEISDLIIQPDVISDQKRYKSLNQEYKGIKALVEKREEYIIVLANIDE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I D SD+E+ ++A++++ + + ELE EI ++L+PKD +D K+ ++EIRAGTG Sbjct: 61 ANEIIAD-GSDAEMVEMAKMQLDEAKDRLPELEEEIKFMLIPKDPEDAKNVMVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y W+ V+ ++ GG+KE++ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCETMGWRTSVVDMNEGTSGGFKEVIFEVTGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV + + D+R+D +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQVDMNDVRVDFFCSSGPGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++ EKSQH+N+ +A+ VLR+RLY++E + E + R Q+ SG Sbjct: 240 SAVRLTHIPTGLVAQCQDEKSQHKNKDKALMVLRSRLYEMELAKKQEEDAKKRSSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN++QGR+TDHR+ LTLY L ++ G I I++ L + + + ASE Sbjct: 300 DRSAKIRTYNYAQGRVTDHRVGLTLYDLGNIMNGDIQKIVSELQLVNNMEKLKEASE 356 >gi|159899315|ref|YP_001545562.1| peptide chain release factor 1 [Herpetosiphon aurantiacus ATCC 23779] gi|159892354|gb|ABX05434.1| peptide chain release factor 1 [Herpetosiphon aurantiacus ATCC 23779] Length = 365 Score = 261 bits (666), Expect = 1e-67, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 230/356 (64%), Gaps = 8/356 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ R+ E+ M++ ++ +++LT E + ++ + + Q ++ ++ Sbjct: 8 RLARVEARYIELNDEMTQPDALSDHVRLTTLAREQTELGELVGRYREFMQAEKSVEEAKA 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + N D E+R++AQ+E+ + + + E+ LLLP+D +D+K+ I+EIR G GG E Sbjct: 68 LLREEN-DPELREMAQLEIDELSARMEAIGAEVRVLLLPRDPNDEKNVIIEIRQGEGGDE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF D++RMY+RYA +R WK EV+S S+N GG+KE++ + G+G +SR+K+E GVHR Sbjct: 127 AALFGADVYRMYQRYAEIRGWKTEVMSLSENGIGGFKEVIFEVQGQGAWSRLKYEGGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATEA GR+HTS TVAVLPE E V+I ED RID R+ G GGQ VNTTDSAV Sbjct: 187 VQRVPATEARGRIHTSTITVAVLPEVEETAVEIKQEDYRIDVYRSGGHGGQGVNTTDSAV 246 Query: 245 RITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 RI + ++V +SQ +NR A+ VLRARLY E+++ E +R Q+GSG Sbjct: 247 RIVYKAGTPEEIVVVCQDTRSQIKNRESALNVLRARLYAREQEKRQKELGESRLAQVGSG 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +R+E++RTYN+ Q RITDHRI + L VL G +D +I+ L+T A+ + + Sbjct: 307 ERAEKMRTYNYPQDRITDHRIGQNISNLPVVLDGALDRLIDALVTFDNAERLKALG 362 >gi|89890298|ref|ZP_01201808.1| peptide chain release factor 1 [Flavobacteria bacterium BBFL7] gi|89517213|gb|EAS19870.1| peptide chain release factor 1 [Flavobacteria bacterium BBFL7] Length = 358 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 154/357 (43%), Positives = 229/357 (64%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +KNRF E+ + + + Y++LT+EY + ++ Y + Sbjct: 1 MIDKLNIVKNRFDEVNDLIIQPDIISDQKRYVQLTKEYKDLKALMEVREEYMTLTANLDE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +I D SD+++ ++AQ++ ++ I ELE +I +L+PKD +D K+ ++EIRAG G Sbjct: 61 AKEIIAD-GSDADMVEMAQMQYDEAKEAIPELEEKIRMMLVPKDPEDAKNAVMEIRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMYE+Y + + W V+ +S GGYKEI+ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYEKYCSSKGWSTSVVDTSHGTSGGYKEIILEVNGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV++ + ++RI+ ++G GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVELDMTEVRIERTTSTGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+++ H PTG++V +KS H+N +A+KVLR+RLY++E + S RK + SG Sbjct: 240 SAIKLHHEPTGMIVSCQDQKSSHKNLEKALKVLRSRLYEMELAKKMEADSEKRKSMVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+SQGR+TDHRINLTLY L+ ++ G I II+ L + + E Sbjct: 300 DRSAKIRTYNYSQGRVTDHRINLTLYDLDNIINGDIQKIIDELQLVDNTEKLKMTDE 356 >gi|329121081|ref|ZP_08249712.1| peptide chain release factor RF1 [Dialister micraerophilus DSM 19965] gi|327471243|gb|EGF16697.1| peptide chain release factor RF1 [Dialister micraerophilus DSM 19965] Length = 359 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 251/354 (70%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++NR+ +E ++S+ ++ + K ++E+A + I++ Y + + + Sbjct: 4 DKLQGIENRYLTLEDKLSDPSVIENQEKWRKFSKEHAELGEIVTLYRQYKKVVETQNAAL 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D N + E+ +LA+ ++ EKEI +LE++++ LL+PKD +D ++ ILEIRAGTGG Sbjct: 64 EILNDKNQE-ELFELAKEDLKEAEKEIEKLEHQLHLLLIPKDPNDSRNVILEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DL +MY ++A RKWK ++ ++ D GGY+E++ TI G +S +KFESGVH Sbjct: 123 EAALFVADLLKMYLKFAEHRKWKCSIVDMNETDLGGYREVICTIDGHNAYSILKFESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+SGRVHTSA TVAVLPEA ++D++I EDIR+D RASG+GGQH+N T SA Sbjct: 183 RVQRIPETESSGRVHTSAVTVAVLPEAEDVDIEISKEDIRVDVYRASGAGGQHINKTSSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V +E+ Q QNR +AM++L+ARLYD ++ +E + NRK Q+GSGDR Sbjct: 243 IRITHLPTGIVVTCQNERDQRQNREKAMQILKARLYDEALRKTKSETAQNRKEQVGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ QGRITDHRI +++Y+++ + GY++ II+ L+ A I Sbjct: 303 SERIRTYNYPQGRITDHRIGVSVYQMDSFMNGYMEPIIDRLIEADLNLKIKEGE 356 >gi|268678716|ref|YP_003303147.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM 6946] gi|268616747|gb|ACZ11112.1| peptide chain release factor 1 [Sulfurospirillum deleyianum DSM 6946] Length = 355 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 171/358 (47%), Positives = 249/358 (69%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ +R+ E+ + +S+ + K L++E + + PI K Y ++ + Sbjct: 1 MLKEKLLPFLDRYNELTMLLSDPNVSNDIKKMTALSKEQSNLEPIKEKTLEYFSTLEQIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + D E+ +LA+ E+ +E LE+EI LLLPKD +D+++ LEIRAGT Sbjct: 61 ENR----FLLEDEELGELAKEELKLLEPHKEILEDEIKLLLLPKDPNDERNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+F DLF+ Y RYA R WKVEV+S S+ GYKE++A I G+G FSR+K+E Sbjct: 117 GGDEAAIFAADLFKSYLRYAENRGWKVEVVSLSEGVLNGYKEVIALIKGQGAFSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GRVHTSA TVAV+PE +++VDI +D++ID MR+SG+GGQ VNTT Sbjct: 177 GVHRVQRVPLTESQGRVHTSAVTVAVMPEVDDVEVDIQEKDLKIDVMRSSGNGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V KSQH+N+ AMK+L+A+LYD++ + + S RK Q+GS Sbjct: 237 DSAVRITHLPTGIVVVNQDGKSQHKNKDAAMKILKAKLYDMQMQERNAKESEARKQQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RITDHR+ LTLY+L+ +++G + D++I+P++T +QA+++ A+ Sbjct: 297 GDRSARIRTYNYPQNRITDHRVGLTLYRLDAIMEGGLYDELIDPIITHYQAELMKEAN 354 >gi|300172696|ref|YP_003771861.1| peptide chain release factor 1 [Leuconostoc gasicomitatum LMG 18811] gi|299887074|emb|CBL91042.1| Peptide chain release factor 1 [Leuconostoc gasicomitatum LMG 18811] Length = 357 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 220/360 (61%), Gaps = 9/360 (2%) Query: 3 FLSHKQ-ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 Q + + +R+ E+ ++++ Y+ L +E + + + Y Q Q Sbjct: 1 MDPIFQSLQTVVDRYDELNEQLADPDVAGDGQQYMALLKEAGEMRETVEVYTHYQQVMQG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D ++ D+E+ LA+ ++ ++ E LE+++ L+LPKD +DDK+ I+EIR Sbjct: 61 ISDAEDML----DDAEMAPLAKEDLNTLKPEKIVLEDQLKILMLPKDPNDDKNIIMEIRG 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E++LF DL MY RYA ++W V ++ + + GGYKE+ I+G V+S++KF Sbjct: 117 AAGGDESSLFAADLLDMYRRYAEKQRWVVSIIDETITEVGGYKEVAIMITGDNVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP+TE GRVHTS ATV V+PE EID ++ D+ + R+ G+GGQ+VN Sbjct: 177 ESGAHRVQRVPSTETQGRVHTSTATVGVMPEFEEIDFELAESDLEEEFFRSGGAGGQNVN 236 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 +AVR+ H PTGIMV E++Q +NR +A K+L +R+YD ++ E + RK + Sbjct: 237 KVSTAVRLVHKPTGIMVKMQEERTQIKNRDKARKLLASRVYDFYAQQNEAEYAEKRKSAV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 G+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G + +I++ L+ A Q + ++ Sbjct: 297 GTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELGEIVDALVIADQTAKLAELNQ 356 >gi|313891751|ref|ZP_07825356.1| peptide chain release factor 1 [Dialister microaerophilus UPII 345-E] gi|313119745|gb|EFR42932.1| peptide chain release factor 1 [Dialister microaerophilus UPII 345-E] Length = 359 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 252/354 (71%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++NR+ +E ++S+ ++ + K ++E+A + I++ Y + + + Sbjct: 4 EKLQGIENRYLTLEDKLSDPSVIENQEKWRKFSKEHAELGEIVTLYRQYKKVFETKNAAL 63 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D N + E+ +LA+ ++ EKEI +LE++++ LL+PKD +D ++ ILEIRAGTGG Sbjct: 64 EILNDKNQE-ELFELAKEDLKEAEKEIEKLEHQLHLLLIPKDPNDSRNVILEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DL +MY ++A RKW+ ++ ++ D GGY+E++ TI G +S +KFESGVH Sbjct: 123 EAALFVADLLKMYLKFAEHRKWRCSIVDMNETDLGGYREVICTIDGHNAYSILKFESGVH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P TE+SGRVHTSA TVAVLPEA ++D++I EDIR+D RASG+GGQH+N T SA Sbjct: 183 RVQRIPETESSGRVHTSAVTVAVLPEAEDVDIEISKEDIRVDVYRASGAGGQHINKTSSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+PTGI+V +E+ Q QNR +AM++L+ARLYD ++ +E + NRK Q+GSGDR Sbjct: 243 IRITHLPTGIVVTCQNERDQRQNREKAMQILKARLYDEALRKTKSETAQNRKEQVGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SERIRTYN+ QGRITDHRI +++Y+++ + GY++ II+ L+ A I Sbjct: 303 SERIRTYNYPQGRITDHRIGVSVYQMDSFMNGYMEPIIDRLIEADLNLKIKEGE 356 >gi|91217382|ref|ZP_01254342.1| peptide chain release factor 1 [Psychroflexus torquis ATCC 700755] gi|91184490|gb|EAS70873.1| peptide chain release factor 1 [Psychroflexus torquis ATCC 700755] Length = 358 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 150/357 (42%), Positives = 234/357 (65%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K RF E+ + + + YI+L++EY + I+ + IY + ++ Sbjct: 1 MLDKLNFIKQRFDEVSDLIIQPDIMSNQKRYIELSKEYKDLKAIMDEREIYIELTDNLKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I + SD+E+ ++A+++ + E+ LE +I +L+PKD +D K+ ++E+RAG G Sbjct: 61 ANDIIS-NESDAEMVEMAKLQYDEAKVELPNLEEKIRMMLIPKDPEDAKNAVVEVRAGAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GD+FRM +Y + WKV+V+ ++ +GGYKEI +SG V+ +K+E+G Sbjct: 120 GDEASIFAGDIFRMLSKYCEHKGWKVDVVDYNEGTNGGYKEIQFEVSGDDVYGTLKYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV V PEA E D+++ +++R+D +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVFPEAEEFDIEVNPKEVRVDYFCSSGPGGQSVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTGI+ +KSQH+N+ +A +VLR+RLY++E + E + R + SG Sbjct: 240 SAVRLTHEPTGIVAQCQDQKSQHKNKEKAFRVLRSRLYEMELAKKQAEDAEKRGSMVTSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS +IRTYN+SQ R+TDHRINLTLY L+ ++ G ++ IIN L + + + S+ Sbjct: 300 DRSAKIRTYNYSQSRVTDHRINLTLYDLDNIINGDLEKIINELKLVDNTEKLKNISD 356 >gi|221068955|ref|ZP_03545060.1| peptide chain release factor 1 [Comamonas testosteroni KF-1] gi|299531475|ref|ZP_07044881.1| peptide chain release factor 1 [Comamonas testosteroni S44] gi|220713978|gb|EED69346.1| peptide chain release factor 1 [Comamonas testosteroni KF-1] gi|298720438|gb|EFI61389.1| peptide chain release factor 1 [Comamonas testosteroni S44] Length = 359 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 170/352 (48%), Positives = 232/352 (65%), Gaps = 9/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ I S+ + Y Q + Sbjct: 1 MQDFLRNQLERYAQRLQELDFLLSREDIMGDMKQYRTISREHADVTAIASRYTRYLQTEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++AQ E+ + E E+ +LE+E+ LLLPKD DD + +EIR Sbjct: 61 DIAAAREML----DDPDMAEMAQEEIGSGEAELIKLEDELQRLLLPKDPDDARPAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA WKVEV+S+S+N+ GGYKE+V I G V+ ++ Sbjct: 117 AGTGGDESALFAGDLTRMYTRYAANVGWKVEVMSASENEIGGYKEVVLRIEGDNVYGALR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEAEAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAAKEAAMRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL V++G + D+I L A Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAVMEGDLGDVIQALQHAR 348 >gi|1526559|dbj|BAA08795.1| peptide termination factor [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 370 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 153/349 (43%), Positives = 230/349 (65%), Gaps = 5/349 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I+ + + + + +L +E A + ++ K Y + +D Sbjct: 7 EALETMQKRLFQIQKDLEDENILKDIKKFTELNKEKANLEEVVEKFVEYKKAVDHIKDAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ DSE+ +LA+IE+ ++ L+ I +LLPKD +D+K+ I+EIR GG Sbjct: 67 AIL-ENEKDSELIELAKIELDENNDKVEHLQQVIEEMLLPKDPNDEKNVIIEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L +S + GGY ++V I G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKINILEASLGEAGGYSQVVFMIKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE +E++++I D+RIDT RASG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSEVEIEIRSNDLRIDTYRASGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V + +SQH N+ AM +LRA++Y+ E ++ + A RK +G+G R Sbjct: 246 VRITHLPTGIVVTSQDGRSQHDNKDIAMTMLRAKVYEAEVEKQQAQADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 SE+ RTYN+ Q R+TDHR+ LTL KL+ V++G ID+ I L+ Q + Sbjct: 306 SEKFRTYNYPQNRVTDHRVGLTLNKLDQVMEGNIDEFIIALINEEQRQK 354 >gi|284050702|ref|ZP_06380912.1| peptide chain release factor 1 [Arthrospira platensis str. Paraca] gi|291567816|dbj|BAI90088.1| peptide chain release factor 1 [Arthrospira platensis NIES-39] Length = 371 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 141/358 (39%), Positives = 230/358 (64%), Gaps = 8/358 (2%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ LR+++ D + ++ + +++ +++ + + E Sbjct: 8 DKLKSVEQTFQELTLRLADPEIATDPDEFQRVAKTRSSLEDVVNAYQEWKTTQTELAGAK 67 Query: 64 TVIGDHNSDSE---IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + +D E ++++A +EV + +++ELE + LLLP+D +DDK+ +LEIRAGT Sbjct: 68 QILRETGNDPELKEMKEMAALEVEELTTKLQELETRLKILLLPQDPNDDKNIMLEIRAGT 127 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+++ GDL RMY RYA + W+V +LS S D GG+KE + I G V+S++KFE+ Sbjct: 128 GGDEASIWAGDLVRMYSRYAETKGWRVRLLSESLADMGGFKEAILEIQGDRVYSQLKFEA 187 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN Sbjct: 188 GVHRVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVQIDAKDIEMTTARSGGAGGQNVNKV 247 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H PTGI + + E+SQ +NR RAM++LRA+LY+ + + + ++ R+ Q+G+ Sbjct: 248 ETAVDLFHKPTGIRVFCTEERSQLKNRERAMQILRAKLYEAKLREQQDAVTSMRRSQVGT 307 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 G RSE+IRTYN+ R+TDHR+ L VL+G I D+I + Q + + +E Sbjct: 308 GSRSEKIRTYNYKDNRVTDHRLGHNFS-LAPVLEGGIGDLIQACVIQDQQERLAQLAE 364 >gi|309390220|gb|ADO78100.1| bacterial peptide chain release factor 1 (bRF-1) [Halanaerobium praevalens DSM 2228] Length = 360 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 157/352 (44%), Positives = 239/352 (67%), Gaps = 5/352 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISP---IISKISIYDQKKQEEQDL 62 ++ L ++ ++ ++S+ ++ K + + I+ K Y K+ + Sbjct: 8 ESKLDKLVAKYKQMNKKLSDPEVINDSDKYQKLLKKHAKLKKIVDKYKEYKAAKEGIAEA 67 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + + D E++ L + E+ ++ + +L+ ++ +LLP D +D+K+ I+EIRAG GG Sbjct: 68 EEMM-ELDDDPEMQALFEEEIAELKPKKEKLQEQLPIMLLPDDPNDEKNVIVEIRAGAGG 126 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL+RMY RYA + WKV+++S++++ GG+KEI+ TI G +F +K+ESGV Sbjct: 127 DEAALFAADLYRMYTRYAEGKGWKVDLMSANESGTGGFKEIIFTIEGTDIFKYLKYESGV 186 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP+TE+SGR+HTS ATVAVLPEA E+DV+I D+ IDT R+SG GGQ VNTTDS Sbjct: 187 HRVQRVPSTESSGRIHTSTATVAVLPEAEEVDVEIETNDLTIDTFRSSGPGGQSVNTTDS 246 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITH PTG+ V EKSQH+N+ +AMK+LRARL + + + ERS RK Q+G+GD Sbjct: 247 AIRITHEPTGLTVSCQDEKSQHKNKAKAMKILRARLQEKKEQEKQKERSEARKSQVGTGD 306 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 RSE+IRTYNF QGR++DHRINLT+++L+ +L G ++ ++ L+ K + Sbjct: 307 RSEKIRTYNFPQGRVSDHRINLTIHQLDKILDGELEPVVEALIEEDNNKRLE 358 >gi|116491555|ref|YP_811099.1| peptide chain release factor 1 [Oenococcus oeni PSU-1] gi|290891160|ref|ZP_06554222.1| hypothetical protein AWRIB429_1612 [Oenococcus oeni AWRIB429] gi|116092280|gb|ABJ57434.1| bacterial peptide chain release factor 1 (bRF-1) [Oenococcus oeni PSU-1] gi|290479124|gb|EFD87786.1| hypothetical protein AWRIB429_1612 [Oenococcus oeni AWRIB429] Length = 357 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 156/354 (44%), Positives = 221/354 (62%), Gaps = 10/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 QI ++ +R+ E+ +++ Y + +E I+PI+ Y Q E D Sbjct: 7 QIQNVVDRYDELNELLADPDVASDSGKYTRYAKELGEITPIVENYRRYQQLTNEINDDKE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D E+ LA+ E+ +E E EL ++ L++PKD +DDK+ I+EIR GG E Sbjct: 67 LL----NDKEMASLAKKELSELEPEQSELSEKLRVLMIPKDPNDDKNIIMEIRGAVGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF GDL MY YA + W E++ + + GG+KE V ISG V+S++KFESG HR Sbjct: 123 ANLFAGDLLNMYAHYAQSQNWSFEIVDQTVGEAGGFKEAVINISGENVYSKLKFESGAHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDS 242 VQRVP TE GRVHTS ATV V+PE +ID + I +D+R D R+SG+GGQH+N T S Sbjct: 183 VQRVPVTETQGRVHTSTATVGVMPEFEDIDTEGLIDPKDVREDVYRSSGAGGQHINKTSS 242 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ H+PTGI V ++SQ QNR +A ++LR+R+YD + + R+ +IGSGD Sbjct: 243 AVRLVHLPTGIKVEMQEQRSQQQNRSKAWQILRSRVYDHFAQENREQYDQQRRTKIGSGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RSERIRTYNF Q R+TDHRIN TL KL+ V+ G +++II+ L+ A Q K + Sbjct: 303 RSERIRTYNFPQNRVTDHRINFTLNKLDKVINGDLEEIIDALIIADQTKRLEEM 356 >gi|260755553|ref|ZP_05867901.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870] gi|260675661|gb|EEX62482.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870] Length = 342 Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats. Identities = 206/324 (63%), Positives = 255/324 (78%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILEIRAGT Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILEIRAGT 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF GDLFRMYERYAA + W+VE++S+S+ D GGYKEI+AT+SG+GVFS++KFES Sbjct: 139 GGLEATLFAGDLFRMYERYAAEKGWRVELVSASEGDAGGYKEIIATVSGKGVFSKLKFES 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA +ID++I EDIRIDTMRASG+GGQHVNTT Sbjct: 199 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEDIDIEIRNEDIRIDTMRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ +ERS R+ Q+GSG Sbjct: 259 DSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAESERSQARRSQVGSG 318 Query: 301 DRSERIRTYNFSQGRITDHRINLT 324 DRSERIRTYNF QGR+TDHRINLT Sbjct: 319 DRSERIRTYNFPQGRVTDHRINLT 342 >gi|254446350|ref|ZP_05059826.1| peptide chain release factor 1 [Verrucomicrobiae bacterium DG1235] gi|198260658|gb|EDY84966.1| peptide chain release factor 1 [Verrucomicrobiae bacterium DG1235] Length = 408 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 156/361 (43%), Positives = 237/361 (65%), Gaps = 7/361 (1%) Query: 2 VFLSHKQICDL---KNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQK 55 + ++ ++ K R EI+ MS + L+ E + +I D+ Sbjct: 41 ILFMAIKLPEISPFKARVEEIDGLMSAPDFYSDARRSAALSREQIKLRQLIEDYDALDKA 100 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 KQ+ + ++ D + D+E+++LA++E+ +E+++ +LE +I ++P D D ++ I+E Sbjct: 101 KQQLAENQEMLDDSSGDAELKELAEMEIPELEEKVEKLEEKILKAMIPPDETDSRNTIVE 160 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAG GG EA+LF DL+RMY R A + W+VE +S+S++ G+KE++ +I+G V+ + Sbjct: 161 IRAGAGGDEASLFAADLYRMYTRLAERKGWRVEQMSASESGIDGFKEVIFSITGEEVYKK 220 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +K ESGVHRVQRVP TE+ GR+HTS ATVAVLPEA E+DV+I +D+ + T RASG+GGQ Sbjct: 221 LKLESGVHRVQRVPETESQGRIHTSTATVAVLPEAEEVDVEINPQDLEVTTCRASGAGGQ 280 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSA+ I H PTGI V + E+SQ +NR +AMKVL +R+ V+++ ++ + NRK Sbjct: 281 HVNTTDSAINIVHKPTGITVYCADERSQIKNRAKAMKVLYSRILQVKQEEERSKYAENRK 340 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+G+GDRSERIRTYNF Q R+TDHRI LTL+ L V+ G +++I+ L I + Sbjct: 341 KQVGTGDRSERIRTYNFPQSRLTDHRIGLTLHSLPAVMDGDMEEILETLENEDMRLKIDA 400 Query: 355 A 355 Sbjct: 401 L 401 >gi|257064123|ref|YP_003143795.1| bacterial peptide chain release factor 1 (bRF-1) [Slackia heliotrinireducens DSM 20476] gi|256791776|gb|ACV22446.1| bacterial peptide chain release factor 1 (bRF-1) [Slackia heliotrinireducens DSM 20476] Length = 352 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 159/357 (44%), Positives = 227/357 (63%), Gaps = 12/357 (3%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + + E+E ++ + + Y +L++EY+ P++ K Y Q ++ D Sbjct: 1 MRDKLSKIVAGYKELEQKLGDPAVLADQKEYTRLSKEYSKQGPLVEKAREYLQACEDIDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +++G D+++R+ AQ + E ++ LE +I ++L+P+D D+K I+EIR G Sbjct: 61 AKSMLG----DADMREFAQETIAECEAKLPGLEEDIKFMLIPEDPADEKDIIVEIRGAAG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL++MY R+ ++WK+E + S ++ GGYKEI + G V+S MKFESG Sbjct: 117 GDEAAIFAGDLYKMYARFCESQRWKIETMDVSASEAGGYKEIQFKVKGDHVYSLMKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA EIDV+I D+RID RA G GGQ VNTTD Sbjct: 177 VHRVQRVPKTESQGRIHTSTATVAVLPEADEIDVEINENDLRIDVYRAGGPGGQCVNTTD 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V + +KSQ QN++ AM VLR+RLY+ A R QIGSG Sbjct: 237 SAVRITHLPSGLVVQSQDQKSQLQNKIAAMAVLRSRLYEKMLAEQQAAEGAERLAQIGSG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DR+E+IRTYN Q R+TDHRI Y VL G + D+I L A +A+ + A Sbjct: 297 DRAEKIRTYNAPQDRVTDHRIGYNGTYN--GVLLGDGLGDLITALQAADRARKLEQA 351 >gi|269468531|gb|EEZ80185.1| Protein chain release factor A [uncultured SUP05 cluster bacterium] Length = 363 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 241/355 (67%), Gaps = 7/355 (1%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E+ +S+ + + +L+ E+A ++PI + Y +++ + + Sbjct: 8 KLEQLSMRLEEVGALLSDPDVAADQNKFRELSIEHAQLTPINEQFEKYLSTQKDIE--SS 65 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 D EI+ +A+ E+ ++++ L+ E+ LLPKD +D ++ I+EIRAGTGG E Sbjct: 66 EEMLLEDDEEIKTMAKEEITEGKEKLEYLDLELKKALLPKDPNDSRNIIIEIRAGTGGDE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A++F GDLFRMY RY +KW++E +SS+ D GG+KE++A ISG V+S++KFESG HR Sbjct: 126 ASIFSGDLFRMYSRYVEKQKWQMEAMSSNIGDHGGFKEVIARISGTNVYSKLKFESGAHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GRVHTSA TVA++PE I+ DI + D+RIDT RASG+GGQHVN TDSA Sbjct: 186 VQRVPETESQGRVHTSACTVAIMPEVENIEEVDINMSDVRIDTFRASGAGGQHVNKTDSA 245 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTG +V +SQH+N+ +A+ VL +R+ D +++ E++ RK IGSGDR Sbjct: 246 VRVTHIPTGTVVECQDGRSQHKNKAQALSVLASRILDAQQQEQQKEQALTRKELIGSGDR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+RIRTYN+ QGRITDHRINLTLYKL V++G ++ II PL+ Q + ++ Sbjct: 306 SQRIRTYNYPQGRITDHRINLTLYKLAEVMEGDLEAIIEPLIVEQQTNQLTELND 360 >gi|29840418|ref|NP_829524.1| peptide chain release factor 1 [Chlamydophila caviae GPIC] gi|33301431|sp|Q822M2|RF1_CHLCV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|29834767|gb|AAP05402.1| peptide chain release factor 1 [Chlamydophila caviae GPIC] Length = 361 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 168/359 (46%), Positives = 237/359 (66%), Gaps = 7/359 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 K+I + R E+E+++S + + L++E+A +S + + +++ D Sbjct: 1 MEKKILEYLKRLEEVEVKISNPEIFENPKEYSSLSKEHARLSELKNVYDKVLGQEKILND 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + + E+ +L + LL+P D DDD + I+E+RAGTG Sbjct: 61 DKEALAQEK-DPEMIAMLEEGIQLGKAEVDKLYKVLENLLVPPDPDDDLNVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+ + WK EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYASTKGWKYEVLSASESDIGGYKEYVMGISGAAVKRLLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D++IDT RASG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E +R E SA R Q+G Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRRQKEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I + L++ +++ +E Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYNLDKVMEGDLDAITSALVSHAYHQLLQHGNE 358 >gi|302334925|ref|YP_003800132.1| bacterial peptide chain release factor 1 (bRF-1) [Olsenella uli DSM 7084] gi|301318765|gb|ADK67252.1| bacterial peptide chain release factor 1 (bRF-1) [Olsenella uli DSM 7084] Length = 355 Score = 260 bits (663), Expect = 3e-67, Method: Composition-based stats. Identities = 162/356 (45%), Positives = 230/356 (64%), Gaps = 7/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L + E+E RM + V Y ++ +E+A+ + +++K Y + + Sbjct: 1 MRDKLEKLIAAYEELEKRMVDPTVVSDPKEYARIAKEHASQAELVAKAREYVGALDDIEV 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + SD+ +++ Q ++ A E ++ LE+EI +L+P D +D+K+ I+EIRAG G Sbjct: 61 AKEM-QRETSDASEKEMLQEDIGANEAKLPALEDEIKVMLIPGDPNDEKNTIVEIRAGVG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL+ MY R+A+ KWK EVLSSS ++ GG+K I ++G VFS MKFESG Sbjct: 120 GDEAAIFAGDLYNMYARFASTHKWKTEVLSSSPSEAGGFKTIEFKVTGDKVFSVMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+ TS ATVAVLPEA EID++I ED+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRIPKTESQGRIQTSTATVAVLPEADEIDIEIKDEDLRIDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY+VE ++ E+ A R QIG G Sbjct: 240 SAVRITHLPTNTVVQSQDQRSQIQNRAVCMEMLRARLYEVELEKQQAEQGAARLGQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 R+E+IRTYN Q R+TDHRI VL G + ++I+ L A +A+ + A Sbjct: 300 SRAEKIRTYNQPQDRVTDHRIGFNSTY-NGVLLGDRLPEVIDALAAAERAEKLARA 354 >gi|40062805|gb|AAR37689.1| peptide chain release factor 1 [uncultured marine bacterium 440] Length = 359 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 172/356 (48%), Positives = 243/356 (68%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ + + + +E++++ ++K ++EY++I +I++ Y ++E+ + Sbjct: 1 MIPIEKVKLIVDTYKTLEIQLASGNISKKDFVKKSKEYSSIGEVINQAKGYLSFEKEKIE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L +I D SD E+ LA+ E+ + ++ + E + LLPKD D K+ ILEIRAGTG Sbjct: 61 LEKIIEDKESDEEMVQLAKKELNELLEKNKTHEKILRIYLLPKDGADAKNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL++MYE+ KW E++S S + GG+KE++ I G ++S +K+E G Sbjct: 121 GDEAGLFVADLYKMYEKVCLNNKWSFEIISISKSGAGGFKEVILLIKGNNIYSFLKYERG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I +D+RID R++GSGGQ VNTTD Sbjct: 181 VHRVQRVPKTETQGRVHTSAATVAVLPEAEEVDIKIQEKDLRIDVYRSTGSGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTGI+VT EKSQH+NR + MK+LR+R+Y+ ER++ ERS +RK QIGSG Sbjct: 241 SAVRITHIPTGIVVTNQDEKSQHKNRAKGMKILRSRVYEAEREKKDKERSKDRKNQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRIN+TL+KL+ L G ++ L Q + S Sbjct: 301 DRSERIRTYNFPQGRVTDHRINVTLHKLKEFLSGDAFGELNQNLRLQDQKIKLASL 356 >gi|329943005|ref|ZP_08291779.1| peptide chain release factor 1 [Chlamydophila psittaci Cal10] gi|332287587|ref|YP_004422488.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC] gi|313848161|emb|CBY17162.1| peptide chain release factor 1 [Chlamydophila psittaci RD1] gi|325506915|gb|ADZ18553.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC] gi|328814552|gb|EGF84542.1| peptide chain release factor 1 [Chlamydophila psittaci Cal10] gi|328914838|gb|AEB55671.1| peptide chain release factor 1 [Chlamydophila psittaci 6BC] Length = 361 Score = 259 bits (662), Expect = 4e-67, Method: Composition-based stats. Identities = 169/358 (47%), Positives = 238/358 (66%), Gaps = 7/358 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 K+I + R E+E ++S D + L++E+A +S + + +++ D Sbjct: 1 MQKKILEYLKRLEEVEAKISNPEIFDNPKEYSLLSKEHARLSELKNTYDRVVAQEKILSD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + + + E+ +L + LL+P D DDD + I+E+RAGTG Sbjct: 61 DKQALAQEK-DPEMIAMLEEGIQSGKAEVDKLYKILENLLVPPDPDDDLNVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+ + WK EVLS+S++D GGYKE V ISG GV +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYASAKGWKYEVLSASESDIGGYKEYVMGISGTGVKRLLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D++IDT RASG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLPEPAENDEEVFIDEKDLKIDTFRASGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E +R E SA R Q+G Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRRHKEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I + L++ +++ + + Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYSLDKVMEGDLDTITSALVSHAYHQLLQNGN 357 >gi|62185243|ref|YP_220028.1| peptide chain release factor 1 [Chlamydophila abortus S26/3] gi|81312600|sp|Q5L5L4|RF1_CHLAB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|62148310|emb|CAH64077.1| peptide chain release factor 1 [Chlamydophila abortus S26/3] Length = 361 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 169/359 (47%), Positives = 239/359 (66%), Gaps = 7/359 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 K+I + R E+E+ +S + + L++E+A +S + + +++ D Sbjct: 1 MQKKILEYLKRLEEVEVEISNPEIFNNPKEYSLLSKEHARLSELKNTYDRVMAQEKVLSD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + + + E+ +L + LL+P D DDD + I+E+RAGTG Sbjct: 61 DKQALAQEK-DPEMIAMLEEGIQSGKAEVEKLYKILENLLVPPDPDDDLNVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+ + WK EVLS+S++D GGYKE V ISG GV +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYASAKGWKYEVLSASESDIGGYKEYVMGISGTGVKRLLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D++IDT RASG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFIDEKDLKIDTFRASGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E +R E SA R Q+G Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEIQRRHKEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I + L++ +++ + +E Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYSLDKVMEGDLDTITSALVSHAYHQLLQNGNE 358 >gi|255348385|ref|ZP_05380392.1| peptide chain release factor 1 [Chlamydia trachomatis 70] gi|255502926|ref|ZP_05381316.1| peptide chain release factor 1 [Chlamydia trachomatis 70s] gi|255506595|ref|ZP_05382234.1| peptide chain release factor 1 [Chlamydia trachomatis D(s)2923] gi|289525068|emb|CBJ14538.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis Sweden2] gi|296434608|gb|ADH16786.1| peptide chain release factor 1 [Chlamydia trachomatis E/150] gi|296438326|gb|ADH20479.1| peptide chain release factor 1 [Chlamydia trachomatis E/11023] Length = 359 Score = 259 bits (661), Expect = 5e-67, Method: Composition-based stats. Identities = 173/348 (49%), Positives = 230/348 (66%), Gaps = 7/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E ++S+ + L++E+A +S I + K+ QD Sbjct: 1 MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D EI + + VL E+ + L ++ LL+P D DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEIVAMLEEGVLVGEEAVEHLSKQLENLLIPPDPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YAA + W+ EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYAASKGWQCEVLSASESDLGGYKEYVMGISGASVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+G++V E+SQH+N+ +AM+VL+AR+ D E ++ A E SA R Q+G Sbjct: 240 TDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V++G +D I L+T Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELDMITTALVTH 347 >gi|237802457|ref|YP_002887651.1| peptide chain release factor 1 [Chlamydia trachomatis B/Jali20/OT] gi|231273691|emb|CAX10469.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis B/Jali20/OT] Length = 359 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 172/348 (49%), Positives = 229/348 (65%), Gaps = 7/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E ++S+ + L++E+A +S I + K+ QD Sbjct: 1 MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D EI + + VL E+ + L ++ LL+P DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPPHPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YAA + W+ EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGYKEYVMGISGASVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+G++V E+SQH+N+ +AM+VL+AR+ D E ++ A E SA R Q+G Sbjct: 240 TDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V++G +D I L+T Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELDMITTALVTH 347 >gi|255534225|ref|YP_003094596.1| Peptide chain release factor 1 [Flavobacteriaceae bacterium 3519-10] gi|255340421|gb|ACU06534.1| Peptide chain release factor 1 [Flavobacteriaceae bacterium 3519-10] Length = 361 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 227/361 (62%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ +K R+ E+ + + + K L +EY+ + I+S Y Q Sbjct: 1 MSKSLIPKLEAIKQRYNEVADLIIQPDIISDQKKYSALNKEYSDLGKIVSVFDQYTQAIN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I D SD E ++A++E ++I ++E E+ LL+PKD DDK+ I+E+R Sbjct: 61 SIAESDEIIAD-GSDKEFVEMAKMEKNEALEKIPQIEEELKVLLIPKDPADDKNVIVELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+FV D++R Y + + WK E+ +++ GYKE++ + G GV+ MK Sbjct: 120 AGTGGDEAAIFVEDVYRAYAMFFKTKGWKHEITDANEASK-GYKELILKVEGEGVYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVP TE+ GRVHTSA TVAVLPEA E+D ++ DI + T R+ G+GGQ+V Sbjct: 179 FESGVHRVQRVPETESQGRVHTSAITVAVLPEAEEVDFELNPADIEMQTSRSGGAGGQNV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N ++ V++TH P+G++V +SQ NR AM++LR +LYD+E +R+ + +A RK Sbjct: 239 NKVETKVQLTHKPSGMVVVCQQARSQLANRELAMEMLRTKLYDIELQRVQGDIAAQRKTM 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + +GDRS +I+TYN+ QGR+TDHR+N ++Y L+ + G I ++I+ ++ A A+ + Sbjct: 299 VSTGDRSAKIKTYNYPQGRVTDHRVNKSVYNLDAYMNGDIQEMIDAVIMAENAEKMKGEE 358 Query: 357 E 357 E Sbjct: 359 E 359 >gi|149174661|ref|ZP_01853286.1| peptide chain release factor 1 [Planctomyces maris DSM 8797] gi|148846355|gb|EDL60693.1| peptide chain release factor 1 [Planctomyces maris DSM 8797] Length = 360 Score = 259 bits (661), Expect = 6e-67, Method: Composition-based stats. Identities = 154/349 (44%), Positives = 231/349 (66%), Gaps = 6/349 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +R+ E+E + + + KL EY ++ + + ++ + ++ + + Sbjct: 6 LQVKLDRYEELEKELQDPEVLANTSKLVEIQREYGGLAKVALAVREFNTRAEDIEVAREM 65 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D R+ AQ E+ + +E + E+ L++ D+ I+EIRAG GG EA Sbjct: 66 L-EEETDPAAREYAQKELDELCEEHEKHIKELEDLVVAGDSITRGGLIMEIRAGAGGDEA 124 Query: 126 ALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 ALF +LF MY + + WK EVL+ S + GG KE+ +I+G G + R++FESG HR Sbjct: 125 ALFARELFDMYMHFVEAQKGWKTEVLNMSATELGGLKEVTFSIAGEGAYHRLQFESGGHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTSAATVAVLPEA+E++VDI +DIR+DT ASG GGQ VN T+SAV Sbjct: 185 VQRVPETETQGRVHTSAATVAVLPEASEVEVDIKPDDIRLDTFHASGPGGQKVNKTESAV 244 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG +V EKSQH+N+ +AM+VLR+R+ + +++ A+ER+ R+ IGSGDRS Sbjct: 245 RITHLPTGTVVQCQDEKSQHKNKAKAMRVLRSRVLEQMQQKAADERADQRRTLIGSGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 +RIRTYNF QGR+TDHRINL+LYK++ ++QG ++D+I+ LL + + + Sbjct: 305 QRIRTYNFPQGRVTDHRINLSLYKIDQIMQGDLNDLISALLQFDREERL 353 >gi|302536943|ref|ZP_07289285.1| peptide chain release factor 1 [Streptomyces sp. C] gi|302445838|gb|EFL17654.1| peptide chain release factor 1 [Streptomyces sp. C] Length = 359 Score = 258 bits (660), Expect = 6e-67, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 220/363 (60%), Gaps = 21/363 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + DL A++E ++++ KL + YA ++PI++ + Q ++ + Sbjct: 3 EAVEDLVGEHADLEKKLADPSVHSDQANARKLNKRYAELTPIVATFRAWKQSAEDIETAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E + + EL ++ LL+P+D DDK +LEI+AG GG Sbjct: 63 ELAADDPD-------FAAEAKELSAQREELTEKLRLLLVPRDPSDDKDVLLEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ ++ +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVSVRTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I + D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEINMNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITHIPTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDQ 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ S DRSE+IRTYNF + RI+DHR Y L+ VL G +D +I + A + Sbjct: 296 RRSQVRSVDRSEKIRTYNFPENRISDHRTGFKAYNLDQVLDGDLDSVIQACVDTDSAAKL 355 Query: 353 GSA 355 +A Sbjct: 356 AAA 358 >gi|264676913|ref|YP_003276819.1| peptide chain release factor 1 [Comamonas testosteroni CNB-2] gi|262207425|gb|ACY31523.1| peptide chain release factor 1 [Comamonas testosteroni CNB-2] Length = 359 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 170/352 (48%), Positives = 232/352 (65%), Gaps = 9/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ +S + Y ++ E+A ++ I S+ + Y Q + Sbjct: 1 MQDFLRNQLERYAQRLQELDFLLSREDIMGDMKQYRTISREHADVTAIASRYTRYLQTEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D ++ ++AQ E+ + E E+ +LE+E+ LLLPKD DD + +EIR Sbjct: 61 DIAAAREML----DDPDMAEMAQEEIGSGEAELIKLEDELQRLLLPKDPDDARPAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA WKVEV+S+S+N+ GGYKE+V I G V+ ++ Sbjct: 117 AGTGGDESALFAGDLTRMYTRYAANVGWKVEVMSASENEIGGYKEVVLRIEGDNVYGALR 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GR+HTSA TVAV+PE E + D+RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRIHTSACTVAVMPEPDEAEAITLNPADLRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ +A++VL+AR+ + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARIQEKERSERAAKEAAMRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IGSGDRS+RIRTYNF QGR+TDHRINLTLYKL V++G + D+I L A Sbjct: 297 LIGSGDRSDRIRTYNFPQGRLTDHRINLTLYKLLAVMEGDLGDVIQALEHAR 348 >gi|300775397|ref|ZP_07085259.1| peptide chain release factor RF1 [Chryseobacterium gleum ATCC 35910] gi|300506137|gb|EFK37273.1| peptide chain release factor RF1 [Chryseobacterium gleum ATCC 35910] Length = 361 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 226/361 (62%), Gaps = 6/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ +K R+ E+ + + + + L +EY+ + I+ Y Sbjct: 1 MSKSLIPKLEAIKQRYNEVADLIIQPDVISDQKRYSSLNKEYSDLGKIVRVYDQYKGALD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I D SD ++ DLA+ E L + +I LE E+ LL+PKD DDK+ I+E+R Sbjct: 61 SIAESEEIIAD-GSDRDLVDLAKEEKLEAQAKIPGLEEELKVLLIPKDPADDKNVIVELR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+FV D++RMY Y + W+ EV S+ GYKE++ + G GV+ MK Sbjct: 120 AGTGGDEAAIFVEDIYRMYTMYFKAKGWRHEVTD-SNEAAKGYKELIMKVEGEGVYGIMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVP TE+ GRVHTSA TVAVLPEA E+DV+I DI + T R+ G+GGQ+V Sbjct: 179 FESGVHRVQRVPETESQGRVHTSAITVAVLPEAEEVDVEINPADIEMQTSRSGGAGGQNV 238 Query: 238 NTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N ++ V++TH P+G ++V +SQ NR AM++LRA+LYD++ + + + +A RK Sbjct: 239 NKVETKVQLTHKPSGLVVVCQQARSQLANRELAMEMLRAKLYDIKLQEVQGDIAAQRKTM 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + +GDRS +I+TYN+ QGR+TDHRIN ++Y L+ + G I ++I+ ++ A A+ + Sbjct: 299 VSTGDRSAKIKTYNYPQGRVTDHRINKSMYNLDAYMNGDISEMIDAVIMAENAEKMKGEE 358 Query: 357 E 357 E Sbjct: 359 E 359 >gi|110003948|emb|CAK98288.1| peptide chain release factor 1 protein [Spiroplasma citri] Length = 358 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 155/357 (43%), Positives = 231/357 (64%), Gaps = 5/357 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQ 57 M + +++ + R+ I +++ V+ KLT +E A + ++ Y Sbjct: 1 MNQKTIERLETMLKRWNLINEELTKPEIVNDVKKLTSLAKEQAQLEETVALYLNYKNVLN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I + D E+ +LA+ E+ E +L E+ +LLPKD +DDK+ I EIR Sbjct: 61 NINEAK-LILETEKDYELIELAKEELKTSEIRKEQLAAELKVILLPKDPNDDKNVIFEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG E +F GDL+RMY +YA + WKVE++ +++++ GG+ I + G V+S+MK Sbjct: 120 GAAGGDEGNIFAGDLYRMYIKYAEQQHWKVELIEANESEAGGFSTISFMVKGDRVYSKMK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESG HRVQR+P TE+ GRVHTS ATVAVLPE E+D +I D++IDT RASG+GGQHV Sbjct: 180 FESGAHRVQRIPKTESKGRVHTSTATVAVLPEIEEVDFEIKTADLKIDTYRASGAGGQHV 239 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTG +V + +SQH N+ AM+ LR++LY+ +++++ ER RK Sbjct: 240 NTTDSAVRITHLPTGFVVTSQDGRSQHDNKALAMQHLRSKLYEEQQRKINEERWTLRKDA 299 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +G+GDRSE+IRTYN+ Q R+TDHRINLTL KL+ +++G +D+I+ L+ Q + Sbjct: 300 VGTGDRSEKIRTYNYPQNRVTDHRINLTLQKLDQIMEGNLDEIVVALINEEQRLKME 356 >gi|242309130|ref|ZP_04808285.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489] gi|239524171|gb|EEQ64037.1| peptide chain release factor 1 [Helicobacter pullorum MIT 98-5489] Length = 356 Score = 258 bits (660), Expect = 7e-67, Method: Composition-based stats. Identities = 165/354 (46%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ R+ EI + + ++ +L++E + + ++ K Y Q Q ++ + Sbjct: 5 KLKPFIERYEEISALLIKPEILNDIKRITELSKEQSDLEKLVQKSKQYLQNLQSIEENKS 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+ DLA+ E+ E + +ELE+EI LLLPKD +D+K+ LE+RAGTGG E Sbjct: 65 LL----DDKELGDLAKEEIKEAEAQNQELESEIKVLLLPKDPNDEKNIYLELRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +FVGDLF+ Y RYA + WKVE++SS++N+ GGYKE++A I G+G +SR+K+E G HR Sbjct: 121 AGIFVGDLFKAYVRYAESKGWKVEIISSNENNFGGYKEVIALIKGKGAYSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VNTTDSAV Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLKIEVFRAGGHGGQCVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI V+ EKSQH+N+ +A+K+L+AR+Y+ E + + + RK Q+GSGDRS Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQMEQNAEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R++DHRI LTLY LE ++ G +D +I P++ QA+ + ++ Sbjct: 301 ERIRTYNYPQNRLSDHRIGLTLYSLEEIMLNGDLDQVIEPIIAYFQAEALQNSG 354 >gi|15604741|ref|NP_219525.1| peptide chain release factor 1 [Chlamydia trachomatis D/UW-3/CX] gi|76788735|ref|YP_327821.1| peptide chain release factor 1 [Chlamydia trachomatis A/HAR-13] gi|237804372|ref|YP_002888526.1| peptide chain release factor 1 [Chlamydia trachomatis B/TZ1A828/OT] gi|255310824|ref|ZP_05353394.1| peptide chain release factor 1 [Chlamydia trachomatis 6276] gi|255317124|ref|ZP_05358370.1| peptide chain release factor 1 [Chlamydia trachomatis 6276s] gi|7388050|sp|O84026|RF1_CHLTR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361522|sp|Q3KMZ9|RF1_CHLTA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|3328413|gb|AAC67613.1| Peptide Chain Releasing Factor (RF-1) [Chlamydia trachomatis D/UW-3/CX] gi|76167265|gb|AAX50273.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis A/HAR-13] gi|231272672|emb|CAX09575.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis B/TZ1A828/OT] gi|296435539|gb|ADH17713.1| peptide chain release factor 1 [Chlamydia trachomatis G/9768] gi|296436463|gb|ADH18633.1| peptide chain release factor 1 [Chlamydia trachomatis G/11222] gi|296437399|gb|ADH19560.1| peptide chain release factor 1 [Chlamydia trachomatis G/11074] gi|297139898|gb|ADH96656.1| peptide chain release factor 1 [Chlamydia trachomatis G/9301] gi|297748154|gb|ADI50700.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia trachomatis D-EC] gi|297749034|gb|ADI51712.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Chlamydia trachomatis D-LC] Length = 359 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 173/348 (49%), Positives = 230/348 (66%), Gaps = 7/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E ++S+ + L++E+A +S I + K+ QD Sbjct: 1 MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D EI + + VL E+ + L ++ LL+P D DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPPDPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YAA + W+ EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYAASKGWQCEVLSTSESDLGGYKEYVMGISGASVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+G++V E+SQH+N+ +AM+VL+AR+ D E ++ A E SA R Q+G Sbjct: 240 TDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V++G +D I L+T Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELDMITTALVTH 347 >gi|166154244|ref|YP_001654362.1| peptide chain release factor 1 [Chlamydia trachomatis 434/Bu] gi|166155119|ref|YP_001653374.1| peptide chain release factor 1 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|301335493|ref|ZP_07223737.1| peptide chain release factor 1 [Chlamydia trachomatis L2tet1] gi|238687434|sp|B0B9D0|RF1_CHLT2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|238687452|sp|B0BB09|RF1_CHLTB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|165930232|emb|CAP03717.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis 434/Bu] gi|165931107|emb|CAP06671.1| bacterial peptide chain release factor 1 [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 359 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 173/348 (49%), Positives = 230/348 (66%), Gaps = 7/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E ++S+ + L++E+A +S I + K+ QD Sbjct: 1 MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D EI + + VL E+ + L ++ LL+P D DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPPDPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YAA + W+ EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYAASKGWQCEVLSASESDLGGYKEYVMGISGASVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+G++V E+SQH+N+ +AM+VL+AR+ D E ++ A E SA R Q+G Sbjct: 240 TDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V++G +D I L+T Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMEGELDMITTALVTH 347 >gi|297183483|gb|ADI19614.1| protein chain release factor a [uncultured SAR11 cluster bacterium HF0770_37D02] Length = 358 Score = 258 bits (660), Expect = 8e-67, Method: Composition-based stats. Identities = 171/356 (48%), Positives = 248/356 (69%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ + N + +E ++ ++K ++EY++I +I++ Y +E+++ Sbjct: 1 MIPIEKVKSIVNTYKTLEKELASGNIDKKDFVKKSKEYSSIEEVINEARGYIDFGKEKKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L +I + + D E+ LA+ E++ + K+ E E ++ LLPKD D K+ ILEIRAGTG Sbjct: 61 LEKIIDEKDGDKEMIKLAENELIQLSKKKSEYEQKLKIYLLPKDEADAKNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL++MYE+ +KW +E+++ S ++ GG+KE++ I G ++S +KFESG Sbjct: 121 GLEATLFVADLYKMYEKVCLKKKWLLEIINISKSEAGGFKEVILLIKGNNIYSFLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I +D+RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRVPKTETQGRVHTSAATVAVLPEAEEVDIKINEKDLRIDVFRSSGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V+ + KSQH+NR +AMK+LR+R+Y+ ER++ ERS +RK QIGSG Sbjct: 241 SAVRITHLPSGVVVSQQDEKSQHKNRAKAMKILRSRVYENEREKKDKERSRDRKNQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTL+KLE L G +++ L Q + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHKLEEFLNGVAFEELSQNLRMRDQETKLANL 356 >gi|228472858|ref|ZP_04057615.1| peptide chain release factor 1 [Capnocytophaga gingivalis ATCC 33624] gi|228275440|gb|EEK14217.1| peptide chain release factor 1 [Capnocytophaga gingivalis ATCC 33624] Length = 357 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 154/351 (43%), Positives = 230/351 (65%), Gaps = 5/351 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +K RF E+ + + + Y++LT+EY + ++ K Y + + Sbjct: 4 RLDIVKQRFDEVSDLIIQPNIIADQKRYVQLTKEYKELKQLMDKRQEYITVTRNITEAEE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + N D E+ ++A++++ ++ + +LE EI +LL+PKD +D K+ ++EIRAGTGG E Sbjct: 64 IIKE-NIDPEMTEMARLQLEEAKERLPQLEEEIKFLLIPKDPEDSKNAVMEIRAGTGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A++F GDL+RMY +Y + W V V+ ++ GG+KEI+ ++G V+ +KFE+GVHR Sbjct: 123 ASIFAGDLYRMYSKYCQDKGWSVSVMDMNEGTSGGFKEIILEVNGEDVYGTLKFEAGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTSAATV VLPEA E DV++ +ED++I ++G GGQ VNTT SA+ Sbjct: 183 VQRVPQTETQGRVHTSAATVMVLPEAEEFDVELNMEDVKIIRTTSTGPGGQSVNTTYSAI 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 ++ HIPTGI V EKSQH+N +A+KVLR+RLY++E + SA RK + SGDRS Sbjct: 243 QLQHIPTGIEVRCQDEKSQHKNLDKALKVLRSRLYEMELAKKMEADSARRKSMVSSGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +IRTYN+ QGR+TDHRI LTLY L ++ G I +I+ L A + + Sbjct: 303 AKIRTYNYPQGRVTDHRIGLTLYDLGNIMNGDIQRLIDELQLAENTEKLKE 353 >gi|46199879|ref|YP_005546.1| peptide chain release factor 1 [Thermus thermophilus HB27] gi|55981909|ref|YP_145206.1| peptide chain release factor 1 [Thermus thermophilus HB8] gi|2500140|sp|P96077|RF1_THET8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|81567592|sp|Q72HB8|RF1_THET2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|88192257|pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Subunit, Trnas, Mrna And Release Factor Rf1 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf1 And Is Described In Remark 400. gi|209156517|pdb|3D5A|X Chain X, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|209156573|pdb|3D5C|X Chain X, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|300508626|pdb|3MR8|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). gi|300508681|pdb|3MS0|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3mrz. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (30s) And 3ms1 (50s). gi|1785848|dbj|BAA13349.1| peptide chain release factor 1 [Thermus thermophilus] gi|46197506|gb|AAS81919.1| peptide chain release factor 1 [Thermus thermophilus HB27] gi|55773322|dbj|BAD71763.1| peptide chain release factor 1 (RF-1) [Thermus thermophilus HB8] Length = 354 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 153/338 (45%), Positives = 213/338 (63%), Gaps = 8/338 (2%) Query: 24 SESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 S+ + Y L+ YA + +I I Y + ++ + +++ D E++++A+ Sbjct: 20 SDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLL----DDPELKEMAK 75 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E A+ LE E+ LLPKD D++ I+EIRAGTGG EAALF DLF MY R+A Sbjct: 76 AEREALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLFNMYLRFA 135 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++ EVL S D GG+ ++V + G G + K+ESGVHRVQRVP TE GR+HTS Sbjct: 136 EEMGFETEVLDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPVTETQGRIHTS 195 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLP+A E D + +++IRID MRASG GGQ VNTTDSAVR+ H+PTGIMV Sbjct: 196 TATVAVLPKAEEEDFALNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDS 255 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ +NR +A+ +LR+RL +++R A R QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 256 RSQIKNREKALMILRSRLLEMKRAEEAERLRKTRLAQIGTGERSEKIRTYNFPQSRVTDH 315 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RI T + LE VL G++ I+ L A Q + + + +E Sbjct: 316 RIGFTTHDLEGVLSGHLTPILEALKRADQERQLAALAE 353 >gi|21672454|ref|NP_660521.1| peptide chain release factor 1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25009047|sp|Q8K9X0|RF1_BUCAP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21623068|gb|AAM67732.1| peptide chain release factor 1 [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 361 Score = 258 bits (659), Expect = 9e-67, Method: Composition-based stats. Identities = 165/355 (46%), Positives = 253/355 (71%), Gaps = 9/355 (2%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+NR+ EIE+ +S+ ++ + + L++EY IS I+ +++ + + ++++ Sbjct: 8 KLKSLRNRYEEIEIMLSQKDTISNQEKFKNLSKEYLQISEIVKNFIKWEKLETDIKNINL 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + +D E+ D+AQ E+ ++K+ ++LE +I LLLP D +D SC +EIRA TGG E Sbjct: 68 LF----NDVEMHDIAQEELFIVKKQKKKLEEKIKILLLPVDPNDQHSCFIEIRAATGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +++F G+LFRMY RYA WK E++SSS+N+ GG+KEI+A ++G+G R+KFESG HR Sbjct: 124 SSIFAGELFRMYTRYAENYMWKTEIMSSSENERGGFKEIIAKVTGKGACGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTS TVA++P +I + D++IDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSTCTVAIMPVRPKTKKEEIKVSDLKIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITHIP+G +V E+SQH+N+ +A+ +L AR+Y + + E S+ R++ +G+G+R Sbjct: 244 IRITHIPSGNVVECQDERSQHKNKAKALSILSARVYADKLAKSQKENSSMRRILLGTGER 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 S+R RTYNF+Q RITDHRINLT+YKL VLQG +D +I+P++ +QA M+ S SE Sbjct: 304 SDRNRTYNFAQNRITDHRINLTIYKLNEVLQGKLDLLIDPIMQEYQADMLSSLSE 358 >gi|269121056|ref|YP_003309233.1| peptide chain release factor 1 [Sebaldella termitidis ATCC 33386] gi|268614934|gb|ACZ09302.1| peptide chain release factor 1 [Sebaldella termitidis ATCC 33386] Length = 359 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 170/355 (47%), Positives = 246/355 (69%), Gaps = 4/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +++ D+ + E+ + + K+ E A++ I + Y K ++++L ++ Sbjct: 3 QKLDDVVKKHEELTQLLMDPVVTSDPKKIMEYNKALNSINDVVEKYKYYKDKKEELASLK 62 Query: 67 GD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 D + D+E++++ E+ +E+EI +E E+ LLLP+D +D+K+ I+EIRAG GG E Sbjct: 63 EDLKNEKDNEMKEMILEEIKNVEEEIPNIEEELKILLLPQDPNDEKNVIMEIRAGAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF D+FRM+ RYA KWKVEV+ +D GG KEIV I G+G +S++K+ESGVHR Sbjct: 123 AALFAYDVFRMFSRYAERNKWKVEVIDRNDIGVGGLKEIVFLIKGKGAYSKLKYESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+SGR+HTS TVAVLPE + V+I D+++DT RASG+GGQHVNTTDSA Sbjct: 183 VQRVPDTESSGRIHTSTITVAVLPEIDDVSQVEINPGDLKVDTYRASGAGGQHVNTTDSA 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V + E+SQ +NR RAMKVL +++Y++E + + R+LQ+GSGDR Sbjct: 243 VRITHIPTGIVVTSQDERSQLKNRERAMKVLASKIYEMEVEEQRKTVESERRLQVGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF QGR+TDHRI LTL+KL+ VL G + ++I+ L QA+++ + E Sbjct: 303 SEKIRTYNFPQGRVTDHRIKLTLHKLDQVLDGDLVELIDALTAYAQAELLKAVGE 357 >gi|57234023|ref|YP_181923.1| peptide chain release factor 1 [Dehalococcoides ethenogenes 195] gi|119361531|sp|Q3Z776|RF1_DEHE1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|57224471|gb|AAW39528.1| peptide chain release factor 1 [Dehalococcoides ethenogenes 195] Length = 355 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 156/353 (44%), Positives = 240/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + RF EIE +S+ ++ L +E A + + Y +E +D Sbjct: 1 MLERLENCEKRFREIEEEISKPEVINDARLVRTLAQERADLQTKVEMYRRYKAISKELED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D +++D+ + E+ ++EK + +L ++ LLPKD +DDKS I+EIRAGTG Sbjct: 61 TKNLL-EIEKDEDMKDMVRGEIASLEKSMADLYTQMTLELLPKDPNDDKSIIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DL++MY RYA L+ WK EV+ + N G KE+V ++G+G FSR+K+E G Sbjct: 120 GDEAGLFAADLYKMYTRYALLKNWKTEVIDINGNVAGIIKEVVFEVNGKGAFSRLKYERG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEASGR+HTS ATVAVLP+ E+D+DI ++D+R+D +SG+GGQ+V Sbjct: 180 VHRVQRVPQTEASGRIHTSTATVAVLPQVEEVDIDINMDDVRVDIFHSSGAGGQNVQKVA 239 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +A+R+THIPTG++V + +SQ +N+ +A VLRARL ++E+ ++ ER+ +R+ Q+G Sbjct: 240 TAIRLTHIPTGLVVCCQDERSQLKNKNKAFAVLRARLMELEQSKVDEERTESRRAQVGQA 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSE+IRTYNF Q R+TDHRI LT + L ++L+GY+D+II+ L T Q +++ Sbjct: 300 DRSEKIRTYNFPQDRLTDHRIGLTAHNLPHILEGYLDEIIDTLATHEQTELLK 352 >gi|206895451|ref|YP_002247173.1| peptide chain release factor 1 [Coprothermobacter proteolyticus DSM 5265] gi|206738068|gb|ACI17146.1| peptide chain release factor 1 [Coprothermobacter proteolyticus DSM 5265] Length = 360 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 158/353 (44%), Positives = 230/353 (65%), Gaps = 5/353 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I ++ R+ + + KL E + + PII KI+ Y + ++ + + Sbjct: 7 IRAMEERYESLVRDLENPEIASDPEQLMKLMREKSQLDPIIEKIADYRKLIRDIESAKAI 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + E+++LA+ E+ +E + + E E+ LL+ D D+K I+EIRAG GG EA Sbjct: 67 L-EEPGEDELKELAEEELRNLEDILPQKEKELKLLLVEPDPMDEKPVIVEIRAGVGGEEA 125 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF GDLFRMY RYA + WKVE++ S+ D GG+KE+V ++ G V+SR+K+ESGVHRV Sbjct: 126 ALFAGDLFRMYTRYAERKGWKVELVDSNPTDLGGFKEVVFSVEGDRVYSRLKYESGVHRV 185 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE+SGR+HTS ATVAVLPE E++++I ED+ IDT RA G GGQ+V ++AVR Sbjct: 186 QRVPETESSGRIHTSTATVAVLPEVDEVEIEINEEDLEIDTFRAGGHGGQNVQKNETAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H PTGI+V E+SQ QN+++A+KVLRA+LY+ + + S+ R+ IGS +R E Sbjct: 246 IKHKPTGIVVTCQDERSQLQNKMKALKVLRAKLYERQLEERQKSMSSFRRSLIGSAERGE 305 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +IRTYNF Q R+TDHRIN T+Y L+ L G +D++I+ L TA + + E Sbjct: 306 KIRTYNFMQNRVTDHRINYTIYYLDRFLDGDLDEMIDALETADRETRLLEMDE 358 >gi|326335566|ref|ZP_08201753.1| peptide chain release factor RF1 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692332|gb|EGD34284.1| peptide chain release factor RF1 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 366 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 156/358 (43%), Positives = 232/358 (64%), Gaps = 5/358 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 +++ ++ +K RF E+ + + + Y++LT+EY + ++ K Y Sbjct: 6 IIWDMLARLDIVKQRFDEVSDLIIQPNIIADQKRYVQLTKEYKELKQLMDKREEYIVITG 65 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I D SD+E+ ++A +++ ++ + +LE EI +LL+PKD +D K+ ++EIR Sbjct: 66 NIAEAEEIIKD-GSDAEMVEMAHLQLEEAKERLPQLEEEIKFLLIPKDPEDSKNAVMEIR 124 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA++F GDL+RMY +Y + W V V+ ++ GG+KEI+ I+G V+ +K Sbjct: 125 AGTGGDEASIFAGDLYRMYSKYCQDKGWSVSVMDMNEGTSGGFKEIILEINGEDVYGTLK 184 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE+GVHRVQRVP TE GRVHTSAATV VLPEA E DV++ +ED++I ++G GGQ V Sbjct: 185 FEAGVHRVQRVPQTETQGRVHTSAATVIVLPEAEEFDVELNMEDVKIIRTTSTGPGGQSV 244 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTT SA+++ HIPTGI V EKSQH+N +A+KVLR+RLY++E + SA RK Sbjct: 245 NTTYSAIQLQHIPTGIEVRCQDEKSQHKNLDKALKVLRSRLYEMELAKKMEADSARRKSM 304 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + SGDRS +IRTYN+ QGR+TDHRI LTLY L ++ G I +I+ L A + + Sbjct: 305 VSSGDRSAKIRTYNYPQGRVTDHRIGLTLYDLGNIINGDIQRLIDELQLAENTEKLKE 362 >gi|150025963|ref|YP_001296789.1| peptide chain release factor 1 [Flavobacterium psychrophilum JIP02/86] gi|166223557|sp|A6H0W3|RF1_FLAPJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|149772504|emb|CAL43987.1| Peptide chain release factor 1 (RF-1) [Flavobacterium psychrophilum JIP02/86] Length = 357 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 148/356 (41%), Positives = 228/356 (64%), Gaps = 5/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +K +F EI + + + + L +EY + ++ K Y ++ Sbjct: 1 MLDRLQIIKQKFDEISDLIIQPDVIADQKRYVALNQEYKGLKSLVEKRDEYVILMANIEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +I D SD+++ ++A++++ ++ + ELE EI +LL+PKD +D K+ ++EIRAGTG Sbjct: 61 ANEIIAD-GSDADMVEMAKMQLEEAKERLPELEEEIKFLLIPKDAEDAKNVMVEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA++F GDLFRMY +Y R W+ V+ ++ GG+KE++ ++G V+ +KFE+G Sbjct: 120 GDEASIFAGDLFRMYTKYCENRGWRTSVVDMNEGTSGGFKEVIFEVTGEDVYGTLKFEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATV VLPEA E DV I + D+R+D +SG GGQ VNTT Sbjct: 180 VHRVQRVPQTETQGRVHTSAATVMVLPEAEEFDVQIDMNDVRVDFFCSSGPGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTG++ +KSQH+N+ +A VLR+RLY+ E + + + R Q+ SG Sbjct: 240 SAVRLTHIPTGLVAQCQDQKSQHKNKDKAFGVLRSRLYEQELAKKQADDAVKRTSQVSSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRS +IRTYN+SQGR+TDHRI L ++ ++ V+ G I ++ L + + + + Sbjct: 300 DRSAKIRTYNYSQGRVTDHRIGLDVFDMDGVMNGKIQKFVDELQLVNNMEKLKESE 355 >gi|256380143|ref|YP_003103803.1| peptide chain release factor 1 [Actinosynnema mirum DSM 43827] gi|255924446|gb|ACU39957.1| peptide chain release factor 1 [Actinosynnema mirum DSM 43827] Length = 354 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 145/355 (40%), Positives = 217/355 (61%), Gaps = 17/355 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L E+E ++++ KL + YA ++PI+ +Q + + + Sbjct: 5 LDALIAEHGELETKLADPSVHADQAGARKLGKRYAELTPIVRAARELEQTRNDLGAAREL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 G+ + +E D + +E+ + LLLP+D D ++EI++G GG E+ Sbjct: 65 AGEDPAFAEEADELSARIPQLEERLT-------ELLLPRDPHDSSDVVMEIKSGEGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY RYA + WK EVL +D+D GG+K++ I RG V+SR+K+E Sbjct: 118 ALFAGDLLRMYLRYAERQGWKAEVLDGTDSDLGGFKDVTVAIKSRGDGPDGVWSRLKYEG 177 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V V+PE + ++I +D+R+D R+SG GGQ VNT Sbjct: 178 GVHRVQRVPVTESQGRIHTSAAGVLVIPETEDVASIEIDDKDLRVDVFRSSGKGGQSVNT 237 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL+ARL + ++ E S R+ Q+ Sbjct: 238 TDSAVRITHLPTGIVVSCQNERSQLQNKARAMQVLQARLQALAEEKAQQEASDARRTQVR 297 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + DRSER+RTYNF + RI+DHR+ + L+ VL G +D +++ L A +A+ + Sbjct: 298 TVDRSERVRTYNFPESRISDHRVGYKAHNLDAVLDGELDAVLDALSAADRAERLA 352 >gi|167754864|ref|ZP_02426991.1| hypothetical protein CLORAM_00368 [Clostridium ramosum DSM 1402] gi|237735404|ref|ZP_04565885.1| peptide chain release factor 1 [Mollicutes bacterium D7] gi|167704914|gb|EDS19493.1| hypothetical protein CLORAM_00368 [Clostridium ramosum DSM 1402] gi|229381149|gb|EEO31240.1| peptide chain release factor 1 [Coprobacillus sp. D7] Length = 358 Score = 258 bits (658), Expect = 1e-66, Method: Composition-based stats. Identities = 148/357 (41%), Positives = 227/357 (63%), Gaps = 6/357 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ ++NR+ E+ + + + ++T+E +++ Y + + Sbjct: 1 MNESMLDRLKTMENRYEELGHMLMDPDIGSDIKKMTEVTKEQSSLQAAYDLYQEYKEVEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 D + + SD EI+++A++E+ +E + E+ +++ L+PKD +D+K I+EIR Sbjct: 61 GISDAKELAKE--SDPEIKEMAKMELAELETRLPEIISKLEIELIPKDPNDNKDVIMEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG E +F GDL+RMY +YA + WKVEV+ + D + GGY I + G V+ ++K Sbjct: 119 GAAGGDEGNIFAGDLYRMYVKYAESQGWKVEVMEAVDAEAGGYSLISFMVKGEDVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESG HRVQRVP TE GRVHTS ATV V+PE E+DV+I D+RIDT RASG+GGQH+ Sbjct: 179 FESGSHRVQRVPKTETQGRVHTSTATVLVMPEMEEVDVEINKSDLRIDTYRASGAGGQHI 238 Query: 238 NTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRITH+PTGI+ + +SQH N+ +AMK L +R+YD +++ + + RK + Sbjct: 239 NKTDSAVRITHLPTGIVAASQDGRSQHDNKDKAMKALVSRIYDFYQQQHDEQVGSERKSK 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +GSGDR+E+IRTYN+ Q R+TDHRI LT+ +L+ ++ G +DDII L+ Q + Sbjct: 299 VGSGDRAEKIRTYNYPQNRVTDHRIGLTIQQLDRIVDGKLDDIITALINEDQRLKME 355 >gi|83718832|ref|YP_442414.1| peptide chain release factor 2 [Burkholderia thailandensis E264] gi|83652657|gb|ABC36720.1| peptide chain release factor 2, programmed [Burkholderia thailandensis E264] Length = 459 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 184/344 (53%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE+ ++ + + L E ++ +++ ++ D ++ QDL + Sbjct: 122 DVKSERLAEVNKQLEDPNVWNDSKNAQALGREKKSLEGVVTTLTELDNDLRDAQDLFDLA 181 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 182 REEND-----EDTLVATESDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 236 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 237 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGDYAYGYLRTETGIHRLV 296 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 297 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 356 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RL++ E ++ E+ + K +G G Sbjct: 357 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFEAELRKRQAEQDKLESSKTDVGWG-- 414 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 415 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 457 >gi|254424165|ref|ZP_05037883.1| peptide chain release factor 1 [Synechococcus sp. PCC 7335] gi|196191654|gb|EDX86618.1| peptide chain release factor 1 [Synechococcus sp. PCC 7335] Length = 367 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 227/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ RM++ D + K+ + A++ + + + E Sbjct: 8 QKLESVEETFGELTRRMADPDVAKDPDEFQKIAKMRASLEETVQTYHQWQETDGELAGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V + SDSE++++A +EV +E+ + LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 EVYKEAASDSEMKEMAAMEVTELEESLAALEKRLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA ++ GDL R+Y RYA + WK +LS S D GG KE + I G V+S++KFESGVH Sbjct: 128 EAGIWAGDLLRLYSRYAEGQGWKANLLSESRADMGGVKEAIVEIQGNQVYSKLKFESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTS ATVAV+PE ++++ I ++I + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPLTESGGRVHTSTATVAVMPEVDDVEIHIDPKEIVMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + +E S+ RK Q+GSG R Sbjct: 248 VDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYEMKLQEQKDEISSMRKSQVGSGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+N L VL+G I+ ++ ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLNQNFS-LPAVLEGDIETVVQTCISQDQQERLEELA 360 >gi|119358446|ref|YP_913090.1| peptide chain release factor 1 [Chlorobium phaeobacteroides DSM 266] gi|166223545|sp|A1BJT9|RF1_CHLPD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119355795|gb|ABL66666.1| bacterial peptide chain release factor 1 (bRF-1) [Chlorobium phaeobacteroides DSM 266] Length = 357 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 150/353 (42%), Positives = 220/353 (62%), Gaps = 6/353 (1%) Query: 7 KQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +K + ++E ++ + + + KL +EY + I+ Y K++ ++ Sbjct: 3 DKLQAIKEKHEDLEQQLLDPHAAEDQNRFRKLNKEYRDLCSIVEAYDRYALAKKQLEESR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E + E ++ LLLPKD D ++ I+EIRAGTGG Sbjct: 63 LLLKNEKEQDMRAMVQDEISSLQESILER-EKQLKLLLLPKDEVDSRNVIIEIRAGTGGE 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL RMY+R+A + WK EVL +++ GG++EIV +SG V+ MK+ESGV Sbjct: 122 EAALFAADLVRMYQRFAEQQGWKYEVLDFNESSVPGGFREIVLGVSGHDVYGTMKYESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE GR+HTSAA+VAVLPEA E+DV+I +D+R DT R+ G GGQ+VN ++ Sbjct: 182 HRVQRVPDTETQGRIHTSAASVAVLPEAEEVDVEIRKDDLRFDTYRSGGKGGQNVNKVET 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH P+GI+V E+SQ QN+ RAMK+LRA+LYD + +R+ R+ + +GD Sbjct: 242 AVRITHQPSGIVVACQEERSQLQNKERAMKMLRAKLYDRQLAEQQEKRAGLRRSMVTTGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RS +IRTYN+ Q R+TDHRI T + L ++QG I DII L QA+ + + Sbjct: 302 RSAKIRTYNYPQSRVTDHRIGFTSHALPQIMQGDIKDIIEALKMHDQAERLQA 354 >gi|157736354|ref|YP_001489037.1| peptide chain release factor 1 [Arcobacter butzleri RM4018] gi|315635491|ref|ZP_07890757.1| peptide chain release factor RF1 [Arcobacter butzleri JV22] gi|166977359|sp|A8EQZ4|RF1_ARCB4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157698208|gb|ABV66368.1| peptide chain release factor 1 [Arcobacter butzleri RM4018] gi|315480249|gb|EFU70916.1| peptide chain release factor RF1 [Arcobacter butzleri JV22] Length = 355 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 180/356 (50%), Positives = 253/356 (71%), Gaps = 9/356 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ NRF EI + S + L++E ++I PI+SK Y + ++ + Sbjct: 1 MLKDKLQPFINRFEEINQLLMSSEITSDIKRMTDLSKEQSSIQPIVSKAKEYIKVLEDIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ D E+ DLA+ E+ +E ELE EI L++PKD +DD++ LE+RAGT Sbjct: 61 ENKLML----DDPELGDLAKEELKELETRKPELEEEIKVLMIPKDPNDDRNIYLELRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+FVGDLFR Y RYA WKVE++SSSD++ GGYKEIV + G V+S++KFE Sbjct: 117 GGDEAAIFVGDLFRAYLRYAENNGWKVEIMSSSDSESGGYKEIVILVKGDHVYSKLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE+ GRVHTSA TVAV+PE +++++I D++ID MRASG+GGQ VNTT Sbjct: 177 GTHRVQRVPATESQGRVHTSAITVAVMPEVDDVEIEINENDLKIDVMRASGNGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+VT +KSQH+N+ RA+KVL+A+LY++E ++ A RK Q+G+ Sbjct: 237 DSAVRITHIPSGIVVTNQDQKSQHKNKDRALKVLKAKLYEIEMEKKMEAEGATRKEQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGS 354 GDRS RIRTYN+ Q RI+DHRINLTLY+L+Y++ G ++I+PL+ HQ+K+I + Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLDYIMNDGLFGEVIDPLIADHQSKLIEA 352 >gi|297568589|ref|YP_003689933.1| peptide chain release factor 1 [Desulfurivibrio alkaliphilus AHT2] gi|296924504|gb|ADH85314.1| peptide chain release factor 1 [Desulfurivibrio alkaliphilus AHT2] Length = 357 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 175/352 (49%), Positives = 246/352 (69%), Gaps = 5/352 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ D+K+R +E R+S+ + + L +E+A +S + + Y + + + Sbjct: 3 EQLADIKDRKKNLEDRLSDPDLMQDPARFKGLAKEHAQVSKLDDLYARYLKAQHDFAANR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + E+ LA+ E + + I LE E+ LLPKD +D+K+ +LEIRAGTGG Sbjct: 63 QLIEEEED-EEMLALARAENGELRESIAVLEKELRLALLPKDPNDEKNVLLEIRAGTGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALFV DLFRMY RYA WKVE LSS+ GGYKEI+A ISG V+SR+K+ESGVH Sbjct: 122 EAALFVADLFRMYSRYAEQLGWKVETLSSNPIGIGGYKEIIALISGEHVYSRLKYESGVH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GRVHTSA TVAVLPEA E+++ I +++ D R+SG GGQ VNTTDSA Sbjct: 182 RVQRVPATETQGRVHTSAVTVAVLPEAEEVELKINPSELKFDVFRSSGPGGQSVNTTDSA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTG++V EKSQH+N+ +A++VLRARL D ++ ++ S++RK Q+GSGDR Sbjct: 242 VRVTHLPTGLVVSCQDEKSQHKNKAKALQVLRARLLDKLQQEQHDQISSDRKSQVGSGDR 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 SER+RTYNF Q R+T+HRINLT+Y+L+ V+ G++D+++ PL+ Q + + S Sbjct: 302 SERVRTYNFPQNRLTEHRINLTIYRLDDVMMGHLDEVVEPLMLHFQTEALKS 353 >gi|330444669|ref|YP_004377655.1| peptide chain release factor 1 [Chlamydophila pecorum E58] gi|328807779|gb|AEB41952.1| peptide chain release factor 1 [Chlamydophila pecorum E58] Length = 363 Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats. Identities = 166/357 (46%), Positives = 233/357 (65%), Gaps = 6/357 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +R EIE+R+S D Y L++E+A +S + + ++++ Sbjct: 1 MFDDTKLTEYLSRLEEIEVRLSSPEIFDHPEEYKALSKEHARLSELKEAYAQLQEQEKIL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D + D E+ + + ++ + E L + LL+P D DDD + I+E+RAG Sbjct: 61 ADDKQALSMEK-DPEMIAMLEEGLVEGKAETERLRKVLENLLVPPDPDDDLNVIMELRAG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALFVGD RMY Y+A + WK EVLSSS++D GYKE V ISG GV +++E Sbjct: 120 TGGEEAALFVGDCVRMYHLYSAAKGWKYEVLSSSESDLKGYKEYVMGISGTGVKRFLQYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +G HRVQRVP TE GRVHTSA TVA+LPE + ++ I +D+RIDT RASG+GGQHVN Sbjct: 180 AGTHRVQRVPETETQGRVHTSAITVAILPEPAEDDEIIIDEKDLRIDTFRASGAGGQHVN 239 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E ++ E SA R Q+ Sbjct: 240 VTDSAVRITHLPTGVVVTCQDERSQHKNKDKAMRILKARIRDAEMQKRQKEASAMRSAQV 299 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GSGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I L++ +++ Sbjct: 300 GSGDRSERIRTYNFSQNRVTDHRIGLTLYSLDKVMEGDLDPITTALVSHAYHQLLSE 356 >gi|134102728|ref|YP_001108389.1| putative peptide chain release factor 1 [Saccharopolyspora erythraea NRRL 2338] gi|291007815|ref|ZP_06565788.1| putative peptide chain release factor 1 [Saccharopolyspora erythraea NRRL 2338] gi|133915351|emb|CAM05464.1| putative peptide chain release factor 1 [Saccharopolyspora erythraea NRRL 2338] Length = 357 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 221/360 (61%), Gaps = 18/360 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L +AE+E R+++ KL YA ++P++ DQ + + Sbjct: 5 KLDGLLAEYAELERRLADPEVHADQAGARKLGRRYAELTPVVRCSKELDQARSDLATARE 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + +E + + + LE ++ LLLP+D D +LE+++G GG E Sbjct: 65 LADEDPAFAEEAESL-------AESVPALEAKLTELLLPRDPHDASDVLLEVKSGEGGEE 117 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVFSRMK 177 +ALF GDL RMY R+A + W+ E+L ++++D GGYK+ + GV+S++K Sbjct: 118 SALFAGDLLRMYLRFAERQGWRTEILDATESDLGGYKDATVAVKTKAGDTGPDGVWSKLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE+ GRVHTSAA V V PE E++V++ +D+RID R+SG GGQ V Sbjct: 178 FEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVEVEVDEKDLRIDVYRSSGPGGQSV 237 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V +EKSQ QN++RA++VLRARL + + E S R+ Q Sbjct: 238 NTTDSAVRITHLPTGIVVSCQNEKSQLQNKIRAIQVLRARLQALAEEEAEREASETRRSQ 297 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI+DHR+N Y L+ VL G +D ++ L+ A + + + +A Sbjct: 298 VRTVDRSERIRTYNFPENRISDHRVNYKAYNLDQVLDGDLDGVLGALVAADRQERLATAE 357 >gi|171911189|ref|ZP_02926659.1| peptide chain release factor 1 [Verrucomicrobium spinosum DSM 4136] Length = 358 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 158/352 (44%), Positives = 231/352 (65%), Gaps = 6/352 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTV 65 I K+RF+E+E M D K E+ ++ ++ S Y + +Q+ D + Sbjct: 7 IEKKKDRFSELEEMMGHPNFYDDNRKAGDLLREHRSLEALVKAWSEYQRTEQQIADNQEL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D+E+ LA+ E+ ++ + ELE E+ +LP D + + I+EIRAGTGG EA Sbjct: 67 AK--SGDAELAALAEEELPTLQARLLELEGEVQRHILPPDPLEGRDVIMEIRAGTGGDEA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A+F GDL+RMY RYA R WK+E + +S +D GGYKE+V +SG VF +K+ESGVHRV Sbjct: 125 AIFAGDLYRMYNRYAEERGWKIESMEASPSDAGGYKEVVFKVSGEDVFRTLKYESGVHRV 184 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATEA GR+HTSAATVAVLPEA E+D+ + +++RI+ RASG GGQ VNTTDSAV+ Sbjct: 185 QRVPATEAQGRIHTSAATVAVLPEAEEVDLQLKPDELRIEVCRASGHGGQGVNTTDSAVQ 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H+PTG++V +SQ +N+ +A+ ++R+RL + +++ A + SA+RK IG G R E Sbjct: 245 VMHLPTGMIVRCQDGRSQLKNKEKAITIMRSRLLEKKQQEEAAKYSAHRKALIGGGGREE 304 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ Q RITDHRI++TLY L+ + G I D+++ L + + A Sbjct: 305 KIRTYNYPQNRITDHRIDVTLYNLDMFVDGRIGDLVDKLQASEIHDRLAEAG 356 >gi|89898158|ref|YP_515268.1| peptide chain release factor 1 [Chlamydophila felis Fe/C-56] gi|119361521|sp|Q255B5|RF1_CHLFF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|89331530|dbj|BAE81123.1| peptide chain release factor RF-1 [Chlamydophila felis Fe/C-56] Length = 361 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 238/359 (66%), Gaps = 7/359 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 K+I + R E+E+++S+ + + L+ E+A ++ + + + ++ D Sbjct: 1 MEKKILEYLKRLEEVEVKISDPEIFNNPKEYSSLSREHARLTELKNVYDKVLRHEKILND 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + + + EI +L + LL+P D DDD + I+E+RAGTG Sbjct: 61 DKHALAQEK-DPEMIAMLEEGIQSGKSEIEKLYKILENLLVPPDPDDDLNVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+ + WK E LS+S++D GGYKE V ISG GV +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYASAKGWKYEELSASESDIGGYKEYVMGISGTGVKRLLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--PLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D ++ +D++IDT RASG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLPEPAEDDEEVFVDEKDLKIDTFRASGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E +R E SA R Q+G Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKAKAMRILKARIRDAEMQRRHKEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I + L++ ++ + +E Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYNLDKVMEGDLDTITSALVSHAYHQLFQNGNE 358 >gi|50365449|ref|YP_053874.1| peptide chain release factor 1 [Mesoplasma florum L1] gi|61214613|sp|Q6F0I3|RF1_MESFL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|50364005|gb|AAT75990.1| peptide chain release factor 1 [Mesoplasma florum L1] Length = 363 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 154/353 (43%), Positives = 228/353 (64%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ R +I+ + V K L +E A + ++ K Y Q D Sbjct: 7 EALETMQKRVDQIDKDLQSEEIVSDVKKMLELNKERANLIEVVEKFIEYKTIIQSIADAK 66 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G + D+E+ +LA++E+ E + + I LLLPKD +DDK+ I+EIR GG Sbjct: 67 EILG-NEKDAEMIELAKMELSENEDAVEPIVAIIEELLLPKDPNDDKNVIVEIRGAAGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDL RMY+ YA + WK+ +L ++ ++ GG+ ++ + G V+S++KFESG H Sbjct: 126 EANIFAGDLLRMYKLYAETQNWKITMLDANSSEAGGFSQVSFMVKGDRVYSKLKFESGAH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GR+ TS ATVAVLPE ++++++I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 186 RVQRVPKTEAKGRIQTSTATVAVLPEMSDVEIEIKNSDLRIDTYRSSGAGGQHVNTTDSA 245 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG++ + +SQH N+ AM +LRAR+Y+ E ++ E A RK +G+G R Sbjct: 246 VRITHIPTGVVAASQDGRSQHDNKDIAMTMLRARIYEAELEKQQAEADATRKNAVGTGAR 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYN+ Q R+TDHR+ LTL KL+ V++G IDD I L+ Q + + + Sbjct: 306 SEKIRTYNYPQNRVTDHRVGLTLNKLDQVMEGKIDDFIIALVNDEQRQKVEAQ 358 >gi|296170240|ref|ZP_06851833.1| peptide chain release factor RF1 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895116|gb|EFG74834.1| peptide chain release factor RF1 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 357 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 149/361 (41%), Positives = 210/361 (58%), Gaps = 17/361 (4%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L AE+E R+++ + K +A ++PI++ + + + + Sbjct: 4 PVQTIDVLLAEHAELEQRLADPDLHSNPAEARKAGRRFARLAPIVATYRKLESARGDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D S ++ + EL+ ++ +L P+D D +LE+++G G Sbjct: 64 ARELAADDESFADEVTEL-------AARVAELDTQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRM 176 G E+ALF DL RMY RYA W V VL + +D GGYK+ +I+ GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWNVTVLDETTSDLGGYKDATLSIASKGDSADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E+ +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGEVHIDESDLRIDVYRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +E+SQ QN+ RA++VL ARL + ++ + SA+R Sbjct: 237 GVNTTDSAVRITHLPTGIVVTCQNERSQLQNKARALQVLAARLQAMAEEQALADASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 QI + DRSERIRTYNF + RITDHRI + L+ VL G +D + + L A + + Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGYKAHNLDQVLDGDLDAMFDALGAADKQARLQQ 356 Query: 355 A 355 A Sbjct: 357 A 357 >gi|296268873|ref|YP_003651505.1| peptide chain release factor 1 [Thermobispora bispora DSM 43833] gi|296091660|gb|ADG87612.1| peptide chain release factor 1 [Thermobispora bispora DSM 43833] Length = 350 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 151/351 (43%), Positives = 218/351 (62%), Gaps = 12/351 (3%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L +A++E ++++ K + YA ++PII+ +++ + + Sbjct: 3 LDELVKEYADLEQKLADPAVHADQAKARKYGKRYAELTPIITTYRELQSVREDLEAAREL 62 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 E +E +I ELE+ + LL+PKD +D K I+EI+AG GG E+ Sbjct: 63 AR-------EDPAFAEEAAELEAKIPELEDRLKRLLIPKDPNDGKDIIMEIKAGEGGEES 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-VFSRMKFESGVHR 184 ALF DL RMY RYA +K E++S+ ++ GGYK++ +I G+ +SR+K+E GVHR Sbjct: 116 ALFAADLLRMYLRYAERLGYKAEIISAQPSELGGYKDVTISIKGKEGAWSRLKYEGGVHR 175 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTSAA V V PEA EIDV I D+RID R+SG GGQ VNTTDSAV Sbjct: 176 VQRVPVTESQGRIHTSAAGVLVYPEAEEIDVQIDPNDLRIDVFRSSGPGGQSVNTTDSAV 235 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V +EKSQ QN+ AM++LRARL + ++ +A R+ Q+ + DRS Sbjct: 236 RITHIPTGVVVSCQNEKSQLQNKEAAMRILRARLLALAQQEAEAAAAAERRSQVRTVDRS 295 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ERIRTYNF + RI+DHR+ Y L+ VL G +D +I L+ A A+ + + Sbjct: 296 ERIRTYNFPENRISDHRVGYKAYNLDQVLDGDLDGVIQALIDAELAEKLAA 346 >gi|15616790|ref|NP_240002.1| peptide chain release factor 1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681545|ref|YP_002467930.1| peptide chain release factor 1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682101|ref|YP_002468485.1| peptide chain release factor 1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471228|ref|ZP_05635227.1| peptide chain release factor 1 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|11134308|sp|P57268|RF1_BUCAI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790868|sp|B8D8X1|RF1_BUCA5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790869|sp|B8D775|RF1_BUCAT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|25299668|pir||H84949 peptide chain release factor 1 [imported] - Buchnera sp. (strain APS) gi|10038853|dbj|BAB12888.1| peptide chain release factor 1 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219621834|gb|ACL29990.1| peptide chain release factor 1 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624388|gb|ACL30543.1| peptide chain release factor 1 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085914|gb|ADP65996.1| peptide chain release factor 1 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311087068|gb|ADP67148.1| peptide chain release factor 1 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 361 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 252/361 (69%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+NR+ EIE+ +++ + + L++EY +S II +++ + Sbjct: 1 MNNSILNKLKSLRNRYQEIEIMLTQKNVISNRENLKTLSKEYLKLSEIIKYFIEWEKLEV 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++++ ++ +D EI+ +A+ E+ K+ + LE +IN LLLP+D +D SC +EIR Sbjct: 61 DIENVNILL----NDVEIQGMAEEELYFFNKKKKALEKKINQLLLPEDPNDKHSCFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 + TGG E+++F G+LFRMY RYA WKVE++++S+++ GG+KEI+A I+GRG R+K Sbjct: 117 SATGGDESSIFAGELFRMYLRYAESYSWKVEIMNTSESEKGGFKEIIAKITGRGACGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTS TVAV+P +I D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSTCTVAVMPVTPKTEKEEINSSDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTG +V E+SQH+N+ +A+ +L AR+Y + ++ E S+ RK+ Sbjct: 237 VNTTDSAIRITHIPTGNVVECQDERSQHKNKAKALSILSARVYAAKLEKDRQESSSMRKI 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+G+RS+R RTYNF Q RITDHRINL++YKL+ VLQG +D +I+P++ +QA M+ S Sbjct: 297 LLGTGERSDRNRTYNFPQNRITDHRINLSIYKLDEVLQGKLDLLIDPIIQEYQADMLSSL 356 Query: 356 S 356 S Sbjct: 357 S 357 >gi|309812101|ref|ZP_07705859.1| peptide chain release factor 1 [Dermacoccus sp. Ellin185] gi|308433788|gb|EFP57662.1| peptide chain release factor 1 [Dermacoccus sp. Ellin185] Length = 362 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 145/359 (40%), Positives = 215/359 (59%), Gaps = 20/359 (5%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + ++E +++E + +L + YAA++P ++ + + + + + + Sbjct: 8 IVAEYDDLEKQLAEPATHADPTLMRRLNKRYAALAPTVAAYHAWKRAQDDLGAAEELADE 67 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + Q + A ++R L LLP+D DD++ +LE++AG GG+E+ALF Sbjct: 68 DAAFAAELPALQTHLDASADKLRTL-------LLPRDEDDERDVVLEVKAGEGGAESALF 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 GDL RMY RYA R WK E+ ++D D GGYK+ T+ G ++R+K+E G Sbjct: 121 AGDLVRMYLRYAERRGWKAEIADATDADLGGYKDARITVRAKGLPEPGEAPWARLKYEGG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 VHRVQRVP TE+ GR+HTSAA V V+P+ E D + D++ID R+SG GGQ VNT Sbjct: 181 VHRVQRVPVTESQGRIHTSAAGVLVMPDLDEDDDEIEFGPNDLKIDVYRSSGPGGQSVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V +EKSQ QN+ A++VL+ARL +E +R E SA RK Q+ Sbjct: 241 TDSAVRITHLPTGVVVSCQNEKSQLQNKESALRVLKARLRQMEIERKEAEASAARKSQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF + RI DHR Y L+ VL G +D ++ L A +A + + E Sbjct: 301 TVDRSERIRTYNFPENRIADHRTGYKSYNLDAVLDGDLDAVVQSALDADEAARLAAVGE 359 >gi|297620931|ref|YP_003709068.1| Peptide chain release factor 1 [Waddlia chondrophila WSU 86-1044] gi|297376232|gb|ADI38062.1| Peptide chain release factor 1 [Waddlia chondrophila WSU 86-1044] Length = 354 Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats. Identities = 159/347 (45%), Positives = 232/347 (66%), Gaps = 6/347 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ NR E+E + + V+ + LT+E+A +S + ++E D Sbjct: 1 MKNKVEEMLNRLPELEELLGQPDVVNDQKRYRLLTQEHAHLSQLKQVYEDLISSRKELSD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D+E + + ++ + K+ EL+ ++ L++P D D+K+ ILE+RAGTG Sbjct: 61 NEEMFASEE-DAEFIKVLEEDIERLTKKTGELQKKLETLIVPPDPKDNKNTILELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY+ +A R WK E L+SS +D GG+KE + +SG V+ +K+E G Sbjct: 120 GDEAALFVGDCVRMYKMFADERGWKYEELASSPSDAGGFKEYMMALSGPNVYRYLKYEGG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVP TE GRVHTSA TVAVL + +V I +D+R+DT RASG+GGQHVNTT Sbjct: 180 THRVQRVPETETQGRVHTSAITVAVLLEPDEDSEVQIDEKDLRVDTYRASGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTGI+ S E+SQH+NR +AM++L+A++ ++E ++ ER++ R Q+GS Sbjct: 240 DSAVRLTHIPTGIVAYCSEERSQHKNRDKAMRLLKAKIMEIEAQKKFEERASERASQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 GDRSERIRTYNF Q RITDHRINLT Y L+ V++G +++I+N ++ Sbjct: 300 GDRSERIRTYNFPQNRITDHRINLTKYNLDKVMEGDLEEIVNAIVAH 346 >gi|328954736|ref|YP_004372069.1| bacterial peptide chain release factor 1 (bRF-1) [Coriobacterium glomerans PW2] gi|328455060|gb|AEB06254.1| bacterial peptide chain release factor 1 (bRF-1) [Coriobacterium glomerans PW2] Length = 355 Score = 257 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 153/356 (42%), Positives = 226/356 (63%), Gaps = 7/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L + ++E ++S+ Y +L +E+A + +++ Y + + Sbjct: 1 MLDKLKKLIKAYEDLEKKLSDPAVMGDQKEYTRLAKEHANQADLVAMARAYVTAYDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D++ + + ++ E +I LENEI +L+P D +D+K+ I+EIR+ G Sbjct: 61 AKEMLHEE-TDAQSKAMLLADISENEAKIPGLENEIKVMLIPGDPNDEKNTIMEIRSAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MYER+ +WK+E+LS+S ++ GG+K I +SG V+S MK+ESG Sbjct: 120 GDEAAIFAGDLFKMYERFFEAHRWKMELLSASPSEAGGFKSIEFKVSGDKVYSLMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE+ GR+ TS ATVAVLPEA EID+ I D+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRIPKTESQGRIQTSTATVAVLPEADEIDIKIDQGDLRIDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY+ E ++ E A R+ QIG G Sbjct: 240 SAVRITHLPTNTVVQSQEQRSQIQNREVCMQMLRARLYERELEQQQAELGAERQSQIGRG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 +RSE+IRTYN Q R+TDHRI + VL G + +IN L A +A+ + A Sbjct: 300 NRSEKIRTYNQPQDRVTDHRIGFSSTY-NGVLLGDQLATVINALSAADRAEKLAQA 354 >gi|160902302|ref|YP_001567883.1| peptide chain release factor 1 [Petrotoga mobilis SJ95] gi|160359946|gb|ABX31560.1| peptide chain release factor 1 [Petrotoga mobilis SJ95] Length = 356 Score = 257 bits (655), Expect = 2e-66, Method: Composition-based stats. Identities = 152/349 (43%), Positives = 229/349 (65%), Gaps = 7/349 (2%) Query: 11 DLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 ++K + E+E ++S+ ++ KL +E++ +S + + Y+Q ++ + L + Sbjct: 9 EVKKKIKELEKQLSDPYITNDIENLKKLGQEHSKLSELNTLFESYEQDLEDIKALREMY- 67 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N D + + +KE + I L+ + D+ ++ I+EIRAGTGG EA+L Sbjct: 68 -ENKDVSEEEYQSMLQELEKKEEETRKKIIEGLVSQDEYDE-RNIIMEIRAGTGGDEASL 125 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F +L RMY RYA + WK E+L ++N+ GG K + I G+G + R+K+ESGVHRVQR Sbjct: 126 FASELMRMYLRYAERKNWKYELLDLNENELGGIKTAILKIKGQGAYRRLKYESGVHRVQR 185 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VP TE+SGR+HTS ATVAVLPEA +IDV I D+RIDT RASG+GGQ+VN TDSAVRIT Sbjct: 186 VPQTESSGRIHTSTATVAVLPEATDIDVQINENDLRIDTYRASGAGGQYVNKTDSAVRIT 245 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQHQN+ +A+ +LRA+L++++ + ++ + RK QIG+ RSE+I Sbjct: 246 HLPTGIVVTCQNERSQHQNKEKALNILRAKLFEIKLEEQQSQLTQERKSQIGTAQRSEKI 305 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 RTYNF Q R+TDHRI T +++ +L G +D+II+ LL + + S Sbjct: 306 RTYNFPQNRVTDHRIQYTTHRINEILDGDLDEIIDKLLEKDLKEKLESL 354 >gi|294055591|ref|YP_003549249.1| peptide chain release factor 1 [Coraliomargarita akajimensis DSM 45221] gi|293614924|gb|ADE55079.1| peptide chain release factor 1 [Coraliomargarita akajimensis DSM 45221] Length = 362 Score = 257 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 152/359 (42%), Positives = 229/359 (63%), Gaps = 7/359 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQ 57 M + I +++ A+++ +M++ + + E+ +S +I + + + Sbjct: 1 MAKIPD--IAPFRDKLADLDAQMADPNFYSDQRRAAEVSREHQRVSGLIERFEAFHSAQT 58 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D + + E+R++A EV ++ +I LE ++ ++P D D ++ ++EIR Sbjct: 59 QIVENEAMMADSSVEEELREMAAEEVEELKGQIETLEKDVLRAMVPPDATDSRNSVMEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG EA +F GDL+RMY RYA + W+VEV+S+S + GGY+EI+ ISG + +K Sbjct: 119 GGAGGDEANIFAGDLYRMYTRYAEAKGWRVEVMSTSPAETGGYREIIFNISGEDAYKHLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVP TE GR+HTS ATVAVLPEA E+D++I +D+ I TMRASG+GGQHV Sbjct: 179 FESGVHRVQRVPVTETQGRIHTSTATVAVLPEAEEVDIEINPQDLEISTMRASGAGGQHV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAV + H PTG+ V + E+SQ +NR +A+ V+R+RL + + +A RK Q Sbjct: 239 NTTDSAVMMVHKPTGVTVYCADERSQIKNRAKALTVMRSRLLQAKVDEENAKYAAERKGQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IG+GDRSERIRTYN+ QGR+TDHRI + L L V+ G +DD+I+ L I + Sbjct: 299 IGTGDRSERIRTYNYPQGRLTDHRIGMNLS-LPSVIDGALDDLIDALHNVDYEARIENL 356 >gi|284992528|ref|YP_003411082.1| peptide chain release factor 1 [Geodermatophilus obscurus DSM 43160] gi|284065773|gb|ADB76711.1| peptide chain release factor 1 [Geodermatophilus obscurus DSM 43160] Length = 363 Score = 256 bits (654), Expect = 3e-66, Method: Composition-based stats. Identities = 155/357 (43%), Positives = 215/357 (60%), Gaps = 14/357 (3%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ L A +E +++ +L YA ++P++ D + + Sbjct: 14 DRLSGLLAEHAALETELADPAVHADASRARRLGRRYAQLAPLVETKRALDAVRDDLAAAR 73 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + S + E+ + ELE + LL+P+D DDDK ILEI+AG GG+ Sbjct: 74 ELADEDASFAAEAAAL-------EQRVPELEERLRSLLVPEDPDDDKDVILEIKAGEGGA 126 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG---VFSRMKFES 180 E+ALF GDL RMY RYA R W EVL + D GGYK++ + R ++SR+KFE Sbjct: 127 ESALFAGDLLRMYLRYAERRGWATEVLDAVPADLGGYKDVAIAVKSRSDEGIWSRLKFEG 186 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSA V VLPEA E+DV + D+RID R+SG GGQ VNTT Sbjct: 187 GVHRVQRVPVTESQGRIHTSAVGVLVLPEAEEVDVTVDPNDLRIDVFRSSGPGGQSVNTT 246 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ +EKSQ QNR A++VLR+RL R A S R+ Q+ + Sbjct: 247 DSAVRITHLPTGIVVSSQNEKSQLQNRESALRVLRSRLLAAARDEAAAAASDQRRSQVRT 306 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSER+RTYNF + RI+DHR+ + L+ VL G +D +I+ L AH A+++ + S Sbjct: 307 VDRSERVRTYNFPESRISDHRVGFKAHNLDQVLDGELDPVIDALTRAHTAELLAAGS 363 >gi|270308380|ref|YP_003330438.1| peptide chain release factor 1 [Dehalococcoides sp. VS] gi|270154272|gb|ACZ62110.1| peptide chain release factor 1 [Dehalococcoides sp. VS] Length = 355 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 157/353 (44%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + RF EIE +S+ ++ L +E A + + Y +E ++ Sbjct: 1 MLERLENCEKRFREIEEEISKPEVINDARLVRTLAQERADLQTKVEMYRRYKAMSKELEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D ++RD+ + E+ +EK + L ++ LLPKD +DDKS I+EIRAGTG Sbjct: 61 AKNLL-EIEKDEDMRDMVRGEIENLEKSMANLYEQMTLELLPKDPNDDKSIIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DL++MY RYA L+ WK EV+ + N G KE+V ++G+G FSR+K+E G Sbjct: 120 GDEAGLFAADLYKMYTRYALLKNWKTEVIDINGNVAGIIKEVVFEVNGKGAFSRLKYERG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEASGR+HTS ATVAVLP+A E+D+DI ++D+R+D +SG+GGQ+V Sbjct: 180 VHRVQRVPQTEASGRIHTSTATVAVLPQAEEVDIDINMDDVRVDIFHSSGAGGQNVQKVA 239 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +A+R+THIPTG++V + +SQ +N+ +A VLRARL ++E+ ++ ER+ +R+ Q+G Sbjct: 240 TAIRLTHIPTGLVVCCQDERSQLKNKNKAFAVLRARLMELEQSKVDEERTESRRAQVGQA 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSE+IRTYNF Q R+TDHRI LT + L ++L+GY+D+II+ L T Q +++ Sbjct: 300 DRSEKIRTYNFPQDRLTDHRIGLTAHNLPHILEGYLDEIIDTLATHEQTELLK 352 >gi|308810022|ref|XP_003082320.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri] gi|116060788|emb|CAL57266.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri] Length = 1699 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 220/354 (62%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ AE+ RM++ + +L++ ++ ++ + Y E ++ Sbjct: 57 KKLEATAKTHAELNERMADPEVTSDPKEFQRLSKACGELNYVVDLYARYRACVDEIEEAR 116 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ +A+ E+ A+ +E +L ++ LLPKD D+K+ +LEIRAGTGG Sbjct: 117 AMVKDAAGDEEMVAMAREEIDALTEESDKLVEDMTLALLPKDPLDEKNIMLEIRAGTGGD 176 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA ++ GDL+RMY R+A W+ V++S+ D GG+KEIVA I G V+S +K+E+GVH Sbjct: 177 EAGIWAGDLYRMYMRFAEREGWQATVVTSNTADAGGFKEIVAEIKGADVYSNLKWEAGVH 236 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE GR+ TS ATVA++PE E++V I +D+ I T R+ G+GGQ+VN ++A Sbjct: 237 RVQRVPATETQGRIQTSTATVAIMPEVDEVEVQIDEKDLDISTARSGGAGGQNVNKVETA 296 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + + H PTGI + + E++Q +NR+RAM++LRA+L++++ + S RK Q+GSG R Sbjct: 297 IDLMHKPTGIRVFCTEERTQLKNRIRAMQILRAKLFEIQLEEQQKAISDKRKSQVGSGSR 356 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R++DHRI T + L+ L G I I + Q + + + Sbjct: 357 SEKIRTYNWKDSRVSDHRIG-TNFPLQTFLDGDIKGAIGAMQALEQQEKLAELN 409 >gi|300867105|ref|ZP_07111771.1| Peptide chain release factor 1 [Oscillatoria sp. PCC 6506] gi|300334860|emb|CBN56937.1| Peptide chain release factor 1 [Oscillatoria sp. PCC 6506] Length = 365 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 136/354 (38%), Positives = 231/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ RM++ + + ++ + +++ +++ ++ + ++ Sbjct: 8 DKLKSVEQTFNELTRRMADPDVAKDPNEFQRVAKARSSLEEVVNTFELWKETQENLAGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E++++A +EV +E + LE+ + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKESASDPEMQEMASLEVGELEDKSDYLESRLKVLLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ DL RMY RYA + W+V++LS S + G+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAADLVRMYSRYAQSQNWQVKMLSESVGESRGFKEAILEIQGDSVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVAV+PE ++++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAVMPEVDDVEIHIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + +E ++ R+ Q+G+G R Sbjct: 248 ADLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMKLREQQDEVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ + L +L+G IDD+I ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRATDHRLG-ENFSLNTILEGDIDDVIQACISLDQQERLAELA 360 >gi|257056964|ref|YP_003134796.1| peptide chain release factor 1 [Saccharomonospora viridis DSM 43017] gi|256586836|gb|ACU97969.1| bacterial peptide chain release factor 1 (bRF-1) [Saccharomonospora viridis DSM 43017] Length = 358 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 222/361 (61%), Gaps = 16/361 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + + L + +AE+E ++++ KL Y+ +SP++ + + + E + Sbjct: 1 MESESLRGLLDEYAELEKQLADPAVHADQARARKLGRRYSELSPVVKTVGELETTRSELE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + +S +E D + K + LE ++ LLLP+D D ++EI++G Sbjct: 61 AAKELAAEDSSFAEEVD-------RLGKRVSALETKLAELLLPRDPYDGSDVVMEIKSGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSR 175 GG E+ALF GDL RMY R+A + W E+L ++ +D GGYK++ ++ GV++ Sbjct: 114 GGEESALFAGDLLRMYLRFAERQGWTAEILDATPSDLGGYKDVTVSVKSKGTEAEGVWAC 173 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +KFE GVHRVQRVPATE+ GR+HTSAA V + PE EI+V+I D+RID R+SG GGQ Sbjct: 174 LKFEGGVHRVQRVPATESQGRIHTSAAGVLIYPEPEEIEVEIDPNDLRIDVFRSSGPGGQ 233 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVR+TH+PTGI+V +EKSQ QNR RA++VL+ARL + + A + + R+ Sbjct: 234 SVNTTDSAVRVTHLPTGIVVSCQNEKSQIQNRARAIQVLQARLQALAEEEAAAKAADARR 293 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+ + DRSER+RTYNF + RI+DHR+N Y L+ VL G + ++ L A + + + Sbjct: 294 SQVRTVDRSERVRTYNFPENRISDHRVNYKAYNLDQVLDGELSGVLEALRAADREERMAQ 353 Query: 355 A 355 A Sbjct: 354 A 354 >gi|118475342|ref|YP_892837.1| peptide chain release factor 1 [Campylobacter fetus subsp. fetus 82-40] gi|166223541|sp|A0RRK4|RF1_CAMFF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118414568|gb|ABK82988.1| peptide chain release factor 1 [Campylobacter fetus subsp. fetus 82-40] Length = 355 Score = 256 bits (654), Expect = 4e-66, Method: Composition-based stats. Identities = 169/358 (47%), Positives = 240/358 (67%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ E+ +S+ ++ KL++E + I Y + Sbjct: 1 MLADKLRPFIDRYNELNSILSDPEVINDISRMTKLSKEQRNLESIKDATQRYLSILNGIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + T++ D E+ +LA+ E+ A+E E+ +LE EI LLLPKD +D+K+ LE+RAGT Sbjct: 61 ENKTLLE----DPELGELAKDELKALETELPKLEEEIKLLLLPKDPNDEKNIFLELRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVGDL Y RY R +K E++SSS+ GGYKE++ I G G +SR+K+E Sbjct: 117 GGDEAALFVGDLATAYIRYTEERGYKYEIVSSSEGSAGGYKELILLIKGEGAYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE + ++DI D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAITVAIMPEVEDSEIDINPNDLKIDVMRSSGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTG++V KSQH+N+ A+KVL+ARLYD++ + + S RK Q+G+ Sbjct: 237 DSAVRVTHIPTGLVVVNQDGKSQHKNKDAAIKVLKARLYDMQERERREKESKERKDQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RI+DHRINLTLY+L+ ++ G D+II+PL+ +QA+ I +A Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLDAIMAAGLFDEIIDPLIAHYQAEAIANAG 354 >gi|328947853|ref|YP_004365190.1| peptide chain release factor 1 [Treponema succinifaciens DSM 2489] gi|328448177|gb|AEB13893.1| Peptide chain release factor 1 [Treponema succinifaciens DSM 2489] Length = 361 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 153/359 (42%), Positives = 234/359 (65%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEE 59 K++ DL R+ + + ++ + K E+ ++ ++S Y + + Sbjct: 1 MDLIKKLEDLSVRYTVVSELIGDASLIKDQKKYKETMREHQQLTELMSLYDEYKKILKGI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I + D ++++LA+ E+ +E++ +LE EI L+P D D+K+ ILEIR+ Sbjct: 61 EDATVLITEEE-DRDMKELAREELKELEEKKPKLEEEIKLKLIPPDPLDEKNIILEIRSA 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA+LFV DL+ MY A + WK E + + + + GG+ +IV +I+G+ V+ +++E Sbjct: 120 AGGDEASLFVRDLWEMYMHLAERKGWKTETMEAQETEVGGFNKIVTSIAGKFVYGTLRWE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVPATE+ GR+ TS TVAVLPEA E ++ I ED+R+D MRA G GGQ VNT Sbjct: 180 SGVHRVQRVPATESQGRLQTSTVTVAVLPEAEETEIQIRPEDVRVDVMRAGGPGGQCVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+THIPTGI+V EKSQH+N+ +A +VLRARL+D+E + +ER+ RK +G Sbjct: 240 TDSAVRLTHIPTGIVVIQQDEKSQHKNKDKAFRVLRARLFDLEESKRQSERADARKNMVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SG RSE+IRTYNF Q R+TDHRINL+L+ L + G +D++++ L + + + +S+ Sbjct: 300 SGARSEKIRTYNFPQDRVTDHRINLSLHNLPSFMMGNMDEMLDALNVYAKEEQLKDSSD 358 >gi|154149107|ref|YP_001407141.1| peptide chain release factor 1 [Campylobacter hominis ATCC BAA-381] gi|166223542|sp|A7I3Q0|RF1_CAMHC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|153805116|gb|ABS52123.1| peptide chain release factor 1 [Campylobacter hominis ATCC BAA-381] Length = 355 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 174/354 (49%), Positives = 240/354 (67%), Gaps = 9/354 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ R+ EI +S+ + KL++E +I P+ + Y + + + Sbjct: 1 MLADRLKPFLKRYDEISESLSDPKILSDISLVTKLSKEQRSIEPVRNATLQYLEVLKNIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++I +D+E+ DLA+ E+ +E +LE EI LL+PKD +D+K+ LEIRAGT Sbjct: 61 DNKSLI----NDTELGDLAKEELKNLEISQNKLEEEIKILLIPKDPNDEKNIFLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF GDL Y RYA LR +K E++S S+ GG+KE++ + G G +SR+KFE Sbjct: 117 GGDEAALFAGDLLDAYLRYAELRGYKTEIVSQSEGSAGGFKEVILLVKGDGAYSRLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE + ++ I D+RID MRASG GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRVHTSAITVAIMPEIEDSEIQINENDLRIDVMRASGHGGQCVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTG++VT KSQH+N+ AMKVL+ARLYD++ K + + RK Q+G+ Sbjct: 237 DSAVRITHIPTGLVVTNQDGKSQHKNKEAAMKVLKARLYDLQEKERKAKEQSERKDQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMI 352 GDRS RIRTYN+ Q RITDHRINLTLY+L+ ++ G + D+II+PL+ QA+ I Sbjct: 297 GDRSGRIRTYNYPQNRITDHRINLTLYRLDAIMAGGLFDEIIDPLIAHAQAEAI 350 >gi|254382315|ref|ZP_04997675.1| peptide chain release factor 1 [Streptomyces sp. Mg1] gi|194341220|gb|EDX22186.1| peptide chain release factor 1 [Streptomyces sp. Mg1] Length = 359 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 147/363 (40%), Positives = 220/363 (60%), Gaps = 21/363 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q ++ + Sbjct: 3 EAVEELIGEHADLEKKLADPSVHSDQANARKLNKRYAELTPIVATFRAWKQSAEDIETAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV + + EL ++ LL+P+D DDK +LE++AG GG Sbjct: 63 EFAADDPD-------FAAEVKELSAQREELTEKLRLLLVPRDPSDDKDVLLEVKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ ++ +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVSVRTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I + D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEINMNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITHIPTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDV 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ S DRSE+IRTYN+ + RI+DHR Y L+ VL G +D II + A + Sbjct: 296 RRSQVRSVDRSEKIRTYNYPENRISDHRTGFKAYNLDQVLDGDLDSIIQACVDTDSAAKL 355 Query: 353 GSA 355 +A Sbjct: 356 AAA 358 >gi|75906944|ref|YP_321240.1| peptide chain release factor 1 [Anabaena variabilis ATCC 29413] gi|119361508|sp|Q3MF91|RF1_ANAVT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|75700669|gb|ABA20345.1| bacterial peptide chain release factor 1 (bRF-1) [Anabaena variabilis ATCC 29413] Length = 366 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 143/354 (40%), Positives = 237/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+++ + D Y K+ + +++ +++ + ++E Sbjct: 8 EKLKSVEQTFNELTRRLADPDTARNPDEYQKIAKSRSSLEEVVNTYETWKIAQEELIGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + NSD E++++A +EV +E++I+ LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QVLKESNSDPELQEIAALEVNELEEKIKYLETRLKVLLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W+V+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYADTQGWRVKLVSESLGEMGGFKEVILEIQGDSVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE E+++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDEVEIHIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + E ++ R+ Q+G+G R Sbjct: 248 VDLMHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEIKLREQQEEVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ L VL+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDSRATDHRLGQNFS-LNPVLEGDLETVIQSCISQDQQERLAELA 360 >gi|167629003|ref|YP_001679502.1| peptide chain release factor 1 [Heliobacterium modesticaldum Ice1] gi|238687991|sp|B0TI71|RF1_HELMI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|167591743|gb|ABZ83491.1| peptide chain release factor 1 [Heliobacterium modesticaldum Ice1] Length = 354 Score = 256 bits (653), Expect = 4e-66, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 248/356 (69%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ ++ E+ +S+ + + + ++ A ++ I+ Y Q D Sbjct: 1 MIDKLEIIEQKYDELTQLLSDPEIIQDQTRWQRHAKQQAGMTEIVDTFRAYKGVLQGIDD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + SD E++++A +E+ + ELE + LLLPKD +DDK+ I+EIRAGTG Sbjct: 61 ARAMLAE--SDPELQEMASLELDELLARKEELEQRLKVLLLPKDPNDDKNVIIEIRAGTG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF GDL+RMY R+A + W+ E+LS++ D GG+KE++ I G+G FS++KFESG Sbjct: 119 GEEAALFAGDLYRMYSRFADRQGWRTELLSANYTDIGGFKEVIVLIEGQGAFSKLKFESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE+SGR+HTSAATVAVLPEA E+++++ ++RID +SG+GGQHVN T+ Sbjct: 179 VHRVQRVPATESSGRIHTSAATVAVLPEAEEVEIEVNPNELRIDVFCSSGAGGQHVNKTE 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V EKSQ +NR +AM+VLRARL + R+ E ++ RK +GSG Sbjct: 239 SAVRITHLPTGIVVSCQDEKSQLKNREKAMRVLRARLLEKAREEQHGEMASARKSMVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF QGR+TDHRI LTL++LE +L G +D++++ L+T QA+ + + Sbjct: 299 DRSERIRTYNFPQGRVTDHRIGLTLHRLETILDGDLDELLDALITTDQAEKLKTME 354 >gi|139439315|ref|ZP_01772757.1| Hypothetical protein COLAER_01773 [Collinsella aerofaciens ATCC 25986] gi|133775339|gb|EBA39159.1| Hypothetical protein COLAER_01773 [Collinsella aerofaciens ATCC 25986] Length = 355 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 156/356 (43%), Positives = 227/356 (63%), Gaps = 7/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + + E+E ++S+ + + +L +EYA S +I+ Y + + Sbjct: 1 MRDKLEKIIKAYEELEKKLSDPAVASDIKEFTRLNKEYAHQSDLIAASREYIGALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D +D++ +++ Q+++ E+++ +LE +I Y+L+P D +DDK+ I+EIR+ G Sbjct: 61 AKEMLRDT-TDADEKEMLQMDISENEEKLPQLEEDIKYMLIPSDPNDDKNTIVEIRSAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL++MY+R+ R WK VL SS ++ GG+K I + G V+S MKFESG Sbjct: 120 GDEAAIFAGDLYKMYQRFCESRGWKTTVLDSSPSEAGGFKSIEFKVEGDRVYSVMKFESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EIDV I D+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRVPKTESQGRIQTSTATVAVLPEAEEIDVQINQSDLRIDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E A R+ QIG G Sbjct: 240 SAVRITHLPTNTVVQSQEQRSQIQNREVCMQMLRARLYEMELEKQQAELGAERQSQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 +RSE+IRTYN Q R+TDHRI VL G + +I L A +A+ + A Sbjct: 300 NRSEKIRTYNQPQDRVTDHRIGFNSTY-NGVLLGDQLGTVIEALAAAERAEKLAQA 354 >gi|297567138|ref|YP_003686110.1| peptide chain release factor 1 [Meiothermus silvanus DSM 9946] gi|296851587|gb|ADH64602.1| peptide chain release factor 1 [Meiothermus silvanus DSM 9946] Length = 364 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 144/356 (40%), Positives = 226/356 (63%), Gaps = 8/356 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ + +E +++ + Y +L++ YA + +++ I Y + + ++ Sbjct: 1 MLEKLESLEQEYQSLEASLADPAVLSDQREYQRLSKRYAEMGELVATIREYKKAHSDLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +++ D ++ ++A++EV I + I ELE ++ LLLPKD DDK+ I+EIRAGTG Sbjct: 61 AKSLL----HDPDMAEMARLEVEEIRRRIPELEAKLELLLLPKDPLDDKNVIVEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L M +A + ++ E+L + D GG ++ + G G + +K+E+G Sbjct: 117 GEEAALFAAELRDMIMEFARRKGFRTEILDVNLTDLGGVSKVSFEVIGAGAYGVLKYEAG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATEA GR+HTS ATVAV+PEA E+DV++ D+ I RASG GGQ VNTTD Sbjct: 177 VHRVQRVPATEAQGRIHTSTATVAVMPEAEEVDVELDPADLEITVSRASGPGGQGVNTTD 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAV++ H PTG++V +SQ +N+ +A+ +LR+RL +++R A R +R QIG+G Sbjct: 237 SAVQVLHKPTGMIVSCMESRSQIKNKEKALTILRSRLLEMKRAEEAARRREDRLAQIGAG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYNF Q R+TDHRI T + LE VL G + ++ L A Q + + + + Sbjct: 297 ERSEKIRTYNFPQSRVTDHRIGFTTHNLEGVLSGDLFELHEALKRADQERQLAAIA 352 >gi|42521715|ref|NP_967095.1| peptide chain release factor RF-1 [Bdellovibrio bacteriovorus HD100] gi|61214632|sp|Q6MRK9|RF1_BDEBA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|39574245|emb|CAE77749.1| peptide chain release factor RF-1 [Bdellovibrio bacteriovorus HD100] Length = 357 Score = 256 bits (653), Expect = 5e-66, Method: Composition-based stats. Identities = 162/350 (46%), Positives = 233/350 (66%), Gaps = 5/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++R+ E+ + + Y L +E + I+ Y +K + + Sbjct: 4 KLDAVESRYEEVNMALQRPDIASNQTQYRALMKELGNLEKIVLVYRDYRKKTENLKASKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D+E+R+L + EV +E E+ +LE ++ L+PKD +DDK+ ILEIRAG GG E Sbjct: 64 LLT-AEQDAEMRELIREEVKELEAELPDLEQQLKIALIPKDPNDDKNTILEIRAGAGGDE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF +LFR Y YA+ + WKVE++S S+ + GG KEI+A+I+G VFS+MK+ESGVHR Sbjct: 123 AALFADELFRGYVHYASTQGWKVEMISFSEGNAGGAKEIIASITGDSVFSKMKYESGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA+GR+HTS TVAV+PE ++ IP+ D+RI+TMR+ GSGGQ VN T+SAV Sbjct: 183 VQRVPKTEAAGRIHTSTVTVAVIPEVEVSEIKIPMSDVRIETMRSQGSGGQSVNRTESAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+ H+PTGI V KSQ NR RA ++L A+L +E ++ E S R QIG+GDRS Sbjct: 243 RVVHLPTGIDVKCQEGKSQSTNRERAFQILYAKLQQIEDEKARKEASDVRLEQIGTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 ERIRTYNF Q RITDHRI LT+++L+ V+ G + +I+PL+ QA+ + Sbjct: 303 ERIRTYNFPQTRITDHRIGLTIHQLDQVMSGSFELLIDPLIANFQAEALK 352 >gi|73748899|ref|YP_308138.1| peptide chain release factor 1 [Dehalococcoides sp. CBDB1] gi|147669660|ref|YP_001214478.1| peptide chain release factor 1 [Dehalococcoides sp. BAV1] gi|289432895|ref|YP_003462768.1| peptide chain release factor 1 [Dehalococcoides sp. GT] gi|119361532|sp|Q3ZYA9|RF1_DEHSC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039969|sp|A5FQC5|RF1_DEHSB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|73660615|emb|CAI83222.1| peptide chain release factor 1 [Dehalococcoides sp. CBDB1] gi|146270608|gb|ABQ17600.1| bacterial peptide chain release factor 1 (bRF-1) [Dehalococcoides sp. BAV1] gi|288946615|gb|ADC74312.1| peptide chain release factor 1 [Dehalococcoides sp. GT] Length = 355 Score = 255 bits (652), Expect = 5e-66, Method: Composition-based stats. Identities = 153/353 (43%), Positives = 239/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + RF EIE +S+ ++ L +E A + + Y +E ++ Sbjct: 1 MLERLENCEKRFIEIEEEISKPEVINDARLVRTLAQERADLQDKVEMYRRYKTMAKELEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D ++R + + E+ +EK + +L ++ + LLPKD +DDKS I+EIRAGTG Sbjct: 61 AKNLL-ESEKDEDMRGMVRGEIENLEKSLTDLYEQMTFELLPKDPNDDKSIIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF DL++MY RYA L+ WK EV+ + N G KE+V ++G+G FSR+K+E G Sbjct: 120 GDEAGLFASDLYKMYIRYALLKNWKTEVIDINGNVAGIIKEVVFEVNGKGAFSRLKYERG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEASGR+HTS ATVAVLP+ E+D+DI ++++R+D +SG+GGQ+V Sbjct: 180 VHRVQRVPQTEASGRIHTSTATVAVLPQVEEVDIDINMDEVRVDIFHSSGAGGQNVQKVA 239 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +A+R+TH+PTG++V + +SQ +N+ +A VLRARL ++E+ ++ ER+ +R+ Q+G Sbjct: 240 TAIRLTHMPTGLVVCCQDERSQLKNKNKAFAVLRARLMELEQSKVDEERTESRRAQVGQA 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSE+IRTYNF Q R+TDHRI LT + L ++L+GY+D+II+ L T Q +++ Sbjct: 300 DRSEKIRTYNFPQDRLTDHRIGLTAHNLPHILEGYLDEIIDTLATHEQTELLK 352 >gi|297622890|ref|YP_003704324.1| peptide chain release factor 1 [Truepera radiovictrix DSM 17093] gi|297164070|gb|ADI13781.1| peptide chain release factor 1 [Truepera radiovictrix DSM 17093] Length = 373 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 156/359 (43%), Positives = 219/359 (61%), Gaps = 11/359 (3%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +L+ F E+E + + + Y + Y+ + I+ Y Q+ Sbjct: 1 MIEKLENLRREFDELEASLGDPELIADQARYREAMGRYSELQTIVRTYREYKDLVDGLQN 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ ++A+ E+ A+E ++ LE + LLLPKD DDK+ I+EIRA G Sbjct: 61 AREALA----DPELAEMAREEIAALEPQLEALERRLERLLLPKDPFDDKNVIVEIRAAAG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF ++F MY RYA + +K EVL S + GG+ ++ I GRG +S+ KFESG Sbjct: 117 GDEASLFAAEVFEMYRRYAEAQGFKTEVLDSHPSSVGGFSKVSFEILGRGAYSKFKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS TVAVLPEA ++DV + D R+D R+SG GGQ VNTTD Sbjct: 177 VHRVQRVPATETQGRIHTSTVTVAVLPEAEDVDVQLSPADYRVDVFRSSGPGGQSVNTTD 236 Query: 242 SAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 SAVRIT+ P ++ KSQ +N+ +A+ VLRARL + ER+R A E R +QI Sbjct: 237 SAVRITYKPGTSDEIVVTCQDGKSQIKNKEKALAVLRARLLERERERAAAEAREARLVQI 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GSG+RSE+IRTYNF Q RITDHRI T + L VL G +D++ L +A Q + +G + Sbjct: 297 GSGERSEKIRTYNFPQSRITDHRIGYTTHNLSDVLLGKLDELTEALSSAEQQEQLGRLA 355 >gi|325971906|ref|YP_004248097.1| peptide chain release factor 1 [Spirochaeta sp. Buddy] gi|324027144|gb|ADY13903.1| Peptide chain release factor 1 [Spirochaeta sp. Buddy] Length = 354 Score = 255 bits (652), Expect = 6e-66, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ + + + A+I+ ++S ++ Y L +E + ++PII ++ + + + Sbjct: 1 MLKKLPEYEKQLADIDEKLSRPETMQDMKLYKSLNQERSHLAPIIDQLQLMHSLQTQIIG 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H ++ + +D E+ ++ + E+ +E E+ E + LL+P D + K I+EIRAGTG Sbjct: 61 AHQLMKEE-TDQEMLEMTREELHELENELEVCEKKTKMLLIPPDPLEGKDIIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY YA + WK+E+LSS++ GGYKE+V +ISG+ V+ +++ESG Sbjct: 120 GEEAALFAANLFRMYSHYADEKGWKMEILSSNETGIGGYKELVISISGKDVYGSLRWESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTSA TVAVLPEA E D++I ED++ID MRA G GGQ VNTTD Sbjct: 180 VHRVQRVPETESGGRIHTSAVTVAVLPEAEETDIEIRQEDLKIDVMRAGGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTG++V EKSQ +NR +A++VLR+RL+D+E + ER+ RK Q+GSG Sbjct: 240 SAVRLTHLPTGLVVICQDEKSQIKNRAKALRVLRSRLFDLEEDKKNRERAEARKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF Q R+TDHRINLTLYKLE +++G +D+++ L A + Sbjct: 300 DRSERIRTYNFPQNRLTDHRINLTLYKLELIMEGQLDEVVEGLKIAAGEAALKE 353 >gi|47558934|gb|AAT35567.1| protein release factor 1 [Chlamydia trachomatis] Length = 359 Score = 255 bits (652), Expect = 7e-66, Method: Composition-based stats. Identities = 173/348 (49%), Positives = 230/348 (66%), Gaps = 7/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E ++S+ + L++E+A +S I + K+ QD Sbjct: 1 MEIKVLECLKRLEEVEKQISDPNIFSNPKEYSSLSKEHARLSEIKNAHESLVATKKILQD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D EI + + VL E+ + L ++ LL+P D DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEIVAMLEEGVLVGEEAVERLSKQLENLLIPPDPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YAA + W+ EVLS+S++D GGYKE V ISG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYAASKGWQCEVLSASESDLGGYKEYVMGISGASVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA TVAVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTVAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIP+G++V E+SQH+N+ +AM+VL+AR+ D E ++ A E SA R Q+G Sbjct: 240 TDSAVRITHIPSGVVVTCQDERSQHKNKAKAMRVLKARIRDAEVQKRAQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V++G +D I L+T Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIALTLYNLDRVMEGELDMITTALVTH 347 >gi|218296205|ref|ZP_03496961.1| peptide chain release factor 1 [Thermus aquaticus Y51MC23] gi|218243277|gb|EED09807.1| peptide chain release factor 1 [Thermus aquaticus Y51MC23] Length = 354 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 151/338 (44%), Positives = 216/338 (63%), Gaps = 8/338 (2%) Query: 24 SESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + Y L+ YA + II+ I Y + ++ + + +++ D E+R++A+ Sbjct: 20 ADPEVLKDQKRYQALSRRYAEMGEIIALIREYRKVLEDLEGVESLLE----DPELREVAK 75 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E A+ LE E+ LLPKD D++ I+EIRAGTGG EAALF DL MY R+A Sbjct: 76 AEKEALLARKEALEKELERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLLEMYLRFA 135 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++ E+L S+ D GG+ ++V + G G + K+ESGVHRVQRVPATE GR+HTS Sbjct: 136 EEMGFETEILDSNPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPATETQGRIHTS 195 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLP+A E D + ++++RID MRASG GGQ VNTTDSAVR+ H+PTGIMV Sbjct: 196 TATVAVLPKAEESDFQLNMDEVRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDS 255 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ +NR +A+ +LR+RL +++R A + R QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 256 RSQIKNREKALMILRSRLLEMKRAEEAEKLRQARLAQIGTGERSEKIRTYNFPQSRVTDH 315 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RI T + LE VL G + ++ L A Q + + + +E Sbjct: 316 RIGFTTHDLEGVLSGKLQPLLEALKRADQERQLEAMTE 353 >gi|257791638|ref|YP_003182244.1| peptide chain release factor 1 [Eggerthella lenta DSM 2243] gi|257475535|gb|ACV55855.1| peptide chain release factor 1 [Eggerthella lenta DSM 2243] Length = 352 Score = 255 bits (651), Expect = 7e-66, Method: Composition-based stats. Identities = 158/357 (44%), Positives = 224/357 (62%), Gaps = 12/357 (3%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + +++ +M + + + L +EYA P+ K Y Q + + Sbjct: 1 MREKLTKIIEAYEDVQAKMGDPAVLADQKEYNRLAKEYANQGPLAKKAREYVQAADDLAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++++ A E+ IE ++ LE +I ++L+P D DDK I+EIRA G Sbjct: 61 AREMLA----DPDMKEFALEEIAGIEAKLPALEEDIKFMLIPADPADDKDIIVEIRAAAG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F G+L++MYER+A+ + WK E + S ++ GG+KEI + G V+S MKFESG Sbjct: 117 GDEAAIFAGELYKMYERFASAQGWKTETMDMSASEAGGFKEIQFKVKGDHVYSVMKFESG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E++V+I D+RID RA G GGQ VNTTD Sbjct: 177 VHRVQRVPKTESQGRIHTSTATVAVLPEADEVEVEINENDLRIDVYRAGGPGGQCVNTTD 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V + +KSQ QN++ AM VLRARLY+ A R QIGSG Sbjct: 237 SAVRITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQAAEGAKRLAQIGSG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSE+IRTYN Q R+TDHRI Y VL G + D+I L A +A+ + +A Sbjct: 297 DRSEKIRTYNGPQDRVTDHRIGFNGTYN--GVLLGDGLGDVITALQAADRAQKLEAA 351 >gi|226492409|ref|NP_001142228.1| hypothetical protein LOC100274396 [Zea mays] gi|194707706|gb|ACF87937.1| unknown [Zea mays] Length = 416 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 247/356 (69%), Gaps = 3/356 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ ++ R A ++ ++++ S + Y + +E+ + + I K++E + L Sbjct: 60 IMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGL 119 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +++ + + + ++R++A+ E+L +E + L++E+ LLPKD D+K CILE+RAGTGG Sbjct: 120 KSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGG 179 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF D+FRMYE+YA WK +V+ ++ GYKE TISG G F ++KFESG+ Sbjct: 180 EEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGI 239 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE SGR+HTSA +VAVLP+A E+DV + ED+RIDT R+ GSGGQ VNTTDS Sbjct: 240 HRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDS 299 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTG +V E+SQH N+ +A+KVLRARLY++ER+R+ +RS R QIGSGD Sbjct: 300 AVRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQIGSGD 359 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHR+ +T + + V++G +D ++ LL + I S Sbjct: 360 RSERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAIASFG 415 >gi|189182919|ref|YP_001936704.1| peptide chain release factor 1 [Orientia tsutsugamushi str. Ikeda] gi|238692229|sp|B3CQD1|RF1_ORITI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189179690|dbj|BAG39470.1| peptide chain release factor RF-1 [Orientia tsutsugamushi str. Ikeda] Length = 359 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 183/351 (52%), Positives = 263/351 (74%), Gaps = 4/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL-TEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++ ++E ++ + + L ++EY+ + PII K++ Y + + + L VI Sbjct: 7 LNKILQKYQDLEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI- 65 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D D E++ +A++E+ + +LE E+ LLPK++DD K+ I+E+RAGTGG EAAL Sbjct: 66 DTEQDLELKSIAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAAL 125 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F LF+MY RYA +KWK E+LS SD + GGYKE A ISG GVF+ +KFESGVHRVQR Sbjct: 126 FAASLFQMYNRYAERKKWKFELLSISDTEIGGYKEASALISGNGVFANLKFESGVHRVQR 185 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +P TE++GR+HTSAATV VLPEA E+DV I +D++IDT RASG+GGQHVNTTDSAVRIT Sbjct: 186 IPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245 Query: 248 HIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V+ + KSQH+N+ +AMK+L ARLYD+E+++ E++ +RK+Q+G+GDRSERI Sbjct: 246 HIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDLEKQKSQQEQAMSRKVQVGTGDRSERI 305 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 RTYN+ QGR+TDHRINLTLYK+E ++ +G +D+IIN L++ ++AK I ++ Sbjct: 306 RTYNYPQGRVTDHRINLTLYKIEEIIQEGKLDEIINNLISENEAKKIADSN 356 >gi|332526537|ref|ZP_08402649.1| peptide chain release factor 1 [Rubrivivax benzoatilyticus JA2] gi|332110805|gb|EGJ10982.1| peptide chain release factor 1 [Rubrivivax benzoatilyticus JA2] Length = 351 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 164/347 (47%), Positives = 236/347 (68%), Gaps = 6/347 (1%) Query: 15 RFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R AE++ +++ V L+ E + ++ ++ + Y Q++Q+ ++ S Sbjct: 2 RLAELDALLADPQVAADVKRLRTLSREQSEVADVVGRWRRYLQREQDLAAAREMLV-AES 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D+E+ +A+ EV+ E ++ LE+E+ L+P+D DD ++ +EIRAGTGG E+ALF GD Sbjct: 61 DAEMAAMAEQEVVDAEADLARLEHELQLALIPRDPDDARNAFVEIRAGTGGDESALFAGD 120 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY RY + W+VEV+S+S+++ GGYKE+V + G VF ++FESG HRVQRVPAT Sbjct: 121 LARMYLRYFERQGWRVEVMSASESELGGYKELVLKVDGTDVFGTLRFESGGHRVQRVPAT 180 Query: 192 EASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 EA GR+HTSA TVAV+PE E +V + ++RIDT RASG+GGQHVN TDSA+RITH+P Sbjct: 181 EAQGRIHTSACTVAVMPEPDEAEEVQLNPAELRIDTFRASGAGGQHVNKTDSAIRITHLP 240 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+ ++SQH+N+ +AM VL ARL + +R A + +A RK +GSGDRS+RIRTY Sbjct: 241 TGIVAECQDDRSQHRNKAKAMAVLAARLREKDRAERAAKEAATRKSLVGSGDRSDRIRTY 300 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 NF QGR+TDHRINLTLYKL ++ G +DD++ L A A+ + Sbjct: 301 NFPQGRLTDHRINLTLYKLGQIMDGELDDVVAALKAARAAEQLAQLE 347 >gi|254455525|ref|ZP_05068954.1| peptide chain release factor 1 [Candidatus Pelagibacter sp. HTCC7211] gi|207082527|gb|EDZ59953.1| peptide chain release factor 1 [Candidatus Pelagibacter sp. HTCC7211] Length = 357 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 175/356 (49%), Positives = 247/356 (69%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I +L + + +E +S + + ++EY+ IS +I Y ++++++ Sbjct: 1 MIPIKTIEELILKHSTLEKDLSSRDLEKKVFAEKSKEYSDISEVIVSAKKYLSYEKDKKE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D++ D E++ LA E+L ++ E E ++ LLPKD D K+ I+EIRAGTG Sbjct: 61 LENILNDNSVDEELKKLADTELLELKDEYERNEKKLKLFLLPKDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF+MYE+ + +KW +E++S S +D GG KE++A+I G ++S +K+ESG Sbjct: 121 GLEASLFASDLFKMYEKVSHKKKWALELISISRSDAGGLKEVIASIKGTNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+D+ I D+RID RA G GGQ VNTTD Sbjct: 181 VHRVQRVPDTETQGRVHTSAATVAVLPEAEEVDLKINEADLRIDVFRAGGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTG+ V+ + KSQH+N+ + MK+LR+RLY++ER R+ ERS +RK +IG+G Sbjct: 241 SAVRITHIPTGLTVSQQDEKSQHKNKAKGMKILRSRLYELERSRIDQERSQDRKTKIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLTL++LE L+G D++I L Q + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTLHRLEEFLEGEAFDEMIESLTLQAQEDSLSNL 356 >gi|251799802|ref|YP_003014533.1| peptide chain release factor 1 [Paenibacillus sp. JDR-2] gi|247547428|gb|ACT04447.1| peptide chain release factor 1 [Paenibacillus sp. JDR-2] Length = 356 Score = 255 bits (651), Expect = 8e-66, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 238/353 (67%), Gaps = 5/353 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +R+ ++ + + +L ++E + + + Y Q ++ +D Sbjct: 1 MLDRLQALADRYEKLSELLCDPDVASDPKRLREYSKEQSDLQEAYEAFTEYKQVSEQLED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + G+ D E+R++ ++E+ + + L+ +I +LLPKD +DDK+ I+EIR G Sbjct: 61 AKLMQGEKLDD-EMREMVKMEIDELTERKTALDEKIRIVLLPKDPNDDKNVIVEIRGAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L+RMY ++A + W+ E++ ++ND GG+KE++ I+G+G +S+MK+ESG Sbjct: 120 GDEAALFAYELYRMYTKFADAQGWRCELMDLNENDLGGFKEVIFMITGKGAYSKMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQR+P TE+ GR+HTS +TV+V+PE E++V+I +DIRIDT +SG+GGQ VNTT Sbjct: 180 AHRVQRIPVTESGGRIHTSTSTVSVMPEVEEVEVEILDKDIRIDTFCSSGAGGQSVNTTK 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H+PTGIM KSQ++N+ +A++VLRAR+ D+ R+ + + RKL++G+G Sbjct: 240 SAVRVLHVPTGIMATCQDGKSQNENKAKALQVLRARISDIRRQEEEAKYAGERKLKVGTG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF Q R+TDHRI LTL+KL+ V+ G + +I++ L A QA+++ Sbjct: 300 DRSERIRTYNFPQSRVTDHRIGLTLHKLDSVMNGDMAEIVSSLTIAEQAELME 352 >gi|291297042|ref|YP_003508440.1| peptide chain release factor 1 [Meiothermus ruber DSM 1279] gi|290472001|gb|ADD29420.1| peptide chain release factor 1 [Meiothermus ruber DSM 1279] Length = 358 Score = 255 bits (651), Expect = 9e-66, Method: Composition-based stats. Identities = 151/356 (42%), Positives = 223/356 (62%), Gaps = 8/356 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ L+ + +E ++++ + Y ++++ YA + ++ I Y + + Sbjct: 1 MLEKLESLEAEYQALERQLADPAVLANQSEYQRISKRYAEMGHLVETIRSYKEALTHLAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ ++A+ ++ A+E IRELE E+ LLLPKD D+K+ I+EIRAGTG Sbjct: 61 AREL----QFDPELGEMARADIAALEPRIRELEAELELLLLPKDPLDEKNAIVEIRAGTG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +L M YA ++VEVL +S D GG ++V +SG G + +K+E+G Sbjct: 117 GEEAALFAAELRDMIMEYAKQGGYRVEVLDTSLTDLGGVSKVVFEVSGPGAYGYLKYEAG 176 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GR+HTS ATVAV+PEA E+DV I D+ I RASG GGQ VNTTD Sbjct: 177 VHRVQRVPATETQGRIHTSTATVAVMPEAEEVDVQIDPADLEITVSRASGPGGQGVNTTD 236 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAV++ H PTG++V +SQ +N+ +A+ +LR+RL +++R A R +R QIG+G Sbjct: 237 SAVQVLHKPTGMIVSCMESRSQIKNKEKALSILRSRLLEMKRAEEAARRREDRLAQIGAG 296 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYNF Q R+TDHRI T + LE VL G + + L A Q + + + S Sbjct: 297 ERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVLAGDLSKLHEALRKADQERQLEALS 352 >gi|226307404|ref|YP_002767364.1| peptide chain release factor 1 [Rhodococcus erythropolis PR4] gi|229489997|ref|ZP_04383850.1| peptide chain release factor 1 [Rhodococcus erythropolis SK121] gi|226186521|dbj|BAH34625.1| peptide chain release factor 1 [Rhodococcus erythropolis PR4] gi|229323098|gb|EEN88866.1| peptide chain release factor 1 [Rhodococcus erythropolis SK121] Length = 359 Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 151/356 (42%), Positives = 213/356 (59%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E +MS+ + ++ + ++ +SPI+S + + + + + Sbjct: 10 IDDILAEHAGLEAQMSDPALHNDPAAARRVGKRFSELSPIMSTYNKLTAAQDDLEAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D +S E+ +E E+ +LE + L P+D D +LE+++G GG E+ Sbjct: 70 AADDSS-------FAAEIPDLEAEVAQLEQTLTDQLAPRDPHDGDDIVLEVKSGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMY RYA W+VE+L ++ +D GGYKE +I + V++R+KFE Sbjct: 123 ALFASDLARMYVRYAERHGWRVEILDATVSDLGGYKEATLSIKSKSDTPDGVWARLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE E V I D+RID R+SG GGQ VNT Sbjct: 183 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVEQVQIDESDLRIDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL V + E SA R+ Q+ Sbjct: 243 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQVVAEEAADAEASAGRQSQVR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RITDHRI + L+ VL G +D +++ L A + + + Sbjct: 303 TVDRSERIRTYNFPENRITDHRIGFKSHNLDAVLDGELDALLDALGKADREARLAA 358 >gi|261886265|ref|ZP_06010304.1| peptide chain release factor 1 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 355 Score = 255 bits (650), Expect = 9e-66, Method: Composition-based stats. Identities = 166/358 (46%), Positives = 239/358 (66%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ +R+ E+ +S+ ++ KL++E + I Y + Sbjct: 1 MLADKLRPFIDRYNELNSILSDPEVINDISRMTKLSKEQRNLESIKDATQRYLSILNGIE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + T++ D E+ +LA+ E+ A+E E+ +LE EI LLLPKD +D+K+ LE+RAGT Sbjct: 61 ENKTLLE----DPELGELAKDELKALETELPKLEEEIKLLLLPKDPNDEKNIFLELRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVGDL Y RY R +K E++SSS+ GGYKE++ I G G +SR+K+E Sbjct: 117 GGDEAALFVGDLATAYIRYTEERGYKYEIVSSSEGSAGGYKELILLIKGEGAYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GRVHTSA TVA++PE + ++DI D++ID MR+SG GGQ VNT+ Sbjct: 177 GTHRVQRVPETESQGRVHTSAITVAIMPEVEDSEIDINPNDLKIDVMRSSGHGGQSVNTS 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 S+VR+THIPTG++V KSQH+N+ A+KVL+ARLYD++ + + S RK Q+G+ Sbjct: 237 VSSVRVTHIPTGLVVVNQDGKSQHKNKDAAIKVLKARLYDMQERERREKESKERKDQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q RI+DHRINLTLY+L+ ++ G D+II+PL+ +QA+ I +A Sbjct: 297 GDRSGRIRTYNYPQNRISDHRINLTLYRLDAIMAAGLFDEIIDPLIAHYQAEAIANAG 354 >gi|224417848|ref|ZP_03655854.1| peptide chain release factor 1 [Helicobacter canadensis MIT 98-5491] gi|253827187|ref|ZP_04870072.1| peptide chain release factor 1 [Helicobacter canadensis MIT 98-5491] gi|313141390|ref|ZP_07803583.1| peptide chain release factor 1 [Helicobacter canadensis MIT 98-5491] gi|253510593|gb|EES89252.1| peptide chain release factor 1 [Helicobacter canadensis MIT 98-5491] gi|313130421|gb|EFR48038.1| peptide chain release factor 1 [Helicobacter canadensis MIT 98-5491] Length = 356 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +R+ EI + ++ + +L++E + + ++ K Y + + ++ Sbjct: 5 KLKPFIDRYDEISNLLIQTEILSDIKRMTELSKEQSDLEKLVQKSKQYLKNLESIEENKG 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+ DLA+ E+ E E + LE+EI LLLPKD +D+K+ LE+RAGTGG E Sbjct: 65 LL----DDKELGDLAKEEIKEAELENQNLESEIKILLLPKDPNDEKNIYLELRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +FVGDLF+ Y RYA + WKVE++SSS+N+ GGYKE++A I G+G +SR+KFE G HR Sbjct: 121 AGIFVGDLFKAYIRYAESKGWKVEIISSSENNVGGYKEVIALIKGKGAYSRLKFEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTSA TVA++PE +++V I D+RI+ RA G GGQ VNTTDSAV Sbjct: 181 VQRVPETESQGRIHTSAITVAIMPEVDDVEVVINPNDLRIEVFRAGGHGGQCVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI V+ EKSQH+N+ +A+K+L+AR+Y+ E + + + RK Q+GSGDRS Sbjct: 241 RITHIPTGISVSMQDEKSQHKNKDKALKILKARIYEAELEAQMEQNAEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYN+ Q R++DHRI LTLY LE ++ G +D +I P++ QA+ + ++ Sbjct: 301 ERIRTYNYPQNRLSDHRIGLTLYSLEEIMLNGDLDQVIEPIIAYFQAEALQNSG 354 >gi|17231677|ref|NP_488225.1| peptide chain release factor 1 [Nostoc sp. PCC 7120] gi|20139331|sp|Q8YPK9|RF1_ANASP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|17133320|dbj|BAB75884.1| translation releasing factor RF-1 [Nostoc sp. PCC 7120] Length = 366 Score = 255 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+ + + D Y K+ + +++ ++ + ++E Sbjct: 8 EKLKSVEQTFNELTRRLGDPDTAKNPDEYQKIAKSRSSLEEVVETYDNWKIAQEELIGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + NSD ++ ++A +EV +E++I LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QVLKEANSDPDMHEMAALEVKELEEKIDYLETRLKVLLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W+V+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYADTQGWRVKLVSESLGEMGGFKEVILEIQGESVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE E+++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDEVEIHIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + E ++ R+ Q+G+G R Sbjct: 248 VDLMHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEIKLREQQEEVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ L VL+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDSRATDHRLGQNFS-LNPVLEGDLETVIQSCISQDQQERLAELA 360 >gi|282898327|ref|ZP_06306318.1| Peptide chain release factor 1 [Raphidiopsis brookii D9] gi|281196858|gb|EFA71763.1| Peptide chain release factor 1 [Raphidiopsis brookii D9] Length = 364 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+++ S D Y K+ + +++ +++ + ++E Sbjct: 8 EKLKSVEQTFHELTRRLADPDTAKSPDEYQKIAKSRSSLEEVVTAYETWKNSQEELVGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D E+ ++A IEV +E +I LE ++ LLLP+D +D+K+ +LEIRAGTGG Sbjct: 68 QILKESNGDPELHEMATIEVKDLESKIEHLEEQLKILLLPRDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + WKV+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYADTQGWKVKLVSESPGEMGGFKEVILEIQGNSVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDDVEVHIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEIKLREQQEAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ L VL+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDSRATDHRLGQNFT-LSPVLEGDLEILIQSCISQDQQERLAELA 360 >gi|330837036|ref|YP_004411677.1| bacterial peptide chain release factor 1 (bRF-1) [Spirochaeta coccoides DSM 17374] gi|329748939|gb|AEC02295.1| bacterial peptide chain release factor 1 (bRF-1) [Spirochaeta coccoides DSM 17374] Length = 354 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 154/354 (43%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + A +++++S ++ + L +E + + PI+ ++ + ++ Sbjct: 1 MLEKLDSFEKELAGLDMKISSPDTMKDMNLFKSLMQERSHLVPIVEELQHLKHVSSQLEE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ +D ++ ++ + E+ ++ E+ + LL+P D K+ I+EIRAGTG Sbjct: 61 SLALLK-SETDPDMIEMTKEEIEGLKAEVEASTSRTKVLLIPPDPLSGKNIIMEIRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+RMY YA + WK+E+L+ ++ GG KE+V +ISG+ V+ +++ESG Sbjct: 120 GEEAALFAADLYRMYTHYAEAKNWKIEILTLNETGLGGIKEVVCSISGKDVYGSLRWESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA GR+HTSA TVAVLPEA E D++I ED+++D MR+ G GGQ VNTTD Sbjct: 180 VHRVQRVPETEAGGRIHTSACTVAVLPEAEETDIEIRPEDLKVDVMRSGGPGGQSVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V EKSQ +N+ +A++VLR+RLYD+E ++ A ER+ R+ Q+GSG Sbjct: 240 SAVRMTHLPTGIVVICQDEKSQIKNKAKALRVLRSRLYDMEEEKKAKERADARRDQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF Q R+TDHRINLTLYKL+ ++ G ++++ L A + Sbjct: 300 DRSERIRTYNFPQNRLTDHRINLTLYKLDLIMNGQLEEVTEALKIAAGEAALKE 353 >gi|148284270|ref|YP_001248360.1| peptide chain release factor [Orientia tsutsugamushi str. Boryong] gi|166223581|sp|A5CCS8|RF1_ORITB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146739709|emb|CAM79522.1| peptide chain release factor [Orientia tsutsugamushi str. Boryong] Length = 359 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 181/351 (51%), Positives = 262/351 (74%), Gaps = 4/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL-TEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++ ++E ++ + + L ++EY+ + PII K++ Y + + + L VI Sbjct: 7 LNKILQKYQDLEADLNGGKLDNKELALISKEYSNLKPIIEKLNRYLKAHENIKYLQQVI- 65 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D D E++ +A++E+ + +LE E+ LLPK++DD K+ I+E+RAGTGG EAAL Sbjct: 66 DTEQDLELKSIAEVELYDTLNYLPKLEEEVKISLLPKESDDHKNAIIEVRAGTGGDEAAL 125 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F LF+MY +YA +KWK E+LS SD + GG KE A ISG GVF+ +KFESGVHRVQR Sbjct: 126 FAASLFQMYNKYAERKKWKFELLSISDTEIGGCKEASALISGNGVFANLKFESGVHRVQR 185 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +P TE++GR+HTSAATV VLPEA E+DV I +D++IDT RASG+GGQHVNTTDSAVRIT Sbjct: 186 IPKTESNGRIHTSAATVVVLPEAEEVDVKIDAKDLKIDTYRASGAGGQHVNTTDSAVRIT 245 Query: 248 HIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V+ + KSQH+N+ +AMK+L ARLYD+E+++ E++ +RK+Q+G+GDRSERI Sbjct: 246 HIPTGVVVSQQDEKSQHKNKAKAMKILYARLYDLEKQKSKQEQAISRKVQVGTGDRSERI 305 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 RTYN+ QGR+TDHRINLTLYK+E ++ +G +D+IIN L++ ++AK I ++ Sbjct: 306 RTYNYPQGRVTDHRINLTLYKIEEIIQEGKLDEIINNLISENEAKKIADSN 356 >gi|119511149|ref|ZP_01630266.1| peptide chain release factor 1 [Nodularia spumigena CCY9414] gi|119464137|gb|EAW45057.1| peptide chain release factor 1 [Nodularia spumigena CCY9414] Length = 365 Score = 254 bits (649), Expect = 1e-65, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ R+++ + D Y K+ + +++ +++ + +E Sbjct: 8 DKLKSVEQTFHELTRRLADPDTASNPDEYQKIAKSRSSLEEVVNTYETWKIATEELAGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + N D E+ ++A +EV +E+++ LE + LLLP+D +D+K+ +LEIRAGTGG Sbjct: 68 QVLKEANGDPELHEMAALEVNELEEKLEHLEARLKVLLLPRDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA L+ WKV+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYAELQHWKVKLVSESLGEMGGFKEVILEIQGDSVYSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE ++++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDDVEIHIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 ADLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMKLAEQQDAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ Y L VL+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLG-QNYSLNPVLEGELETVIQSCISQDQQERLAELA 360 >gi|15834912|ref|NP_296671.1| peptide chain release factor 1 [Chlamydia muridarum Nigg] gi|270285082|ref|ZP_06194476.1| peptide chain release factor 1 [Chlamydia muridarum Nigg] gi|270289105|ref|ZP_06195407.1| peptide chain release factor 1 [Chlamydia muridarum Weiss] gi|301336478|ref|ZP_07224680.1| peptide chain release factor 1 [Chlamydia muridarum MopnTet14] gi|13878666|sp|Q9PL16|RF1_CHLMU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|7190335|gb|AAF39160.1| peptide chain release factor 1 [Chlamydia muridarum Nigg] Length = 359 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 231/359 (64%), Gaps = 8/359 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + R E+E +S+ + L++E+A +S I + K+ D Sbjct: 1 MEVKVLECLRRLEEVEKLISDPNIFSNPKEYSSLSKEHARLSEIKNAHESILAAKKILHD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + E+ + L ++ LL+P D DDD S I+E+RAGTG Sbjct: 61 -DKLALSTEKDPEMIAMLEEGIQGGEESLERLSKQLENLLIPPDPDDDLSVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+++ W+ EVLS+S++D GGYKE + +SG V +++E+G Sbjct: 120 GDEAALFVGDCVRMYHLYASIKGWQCEVLSASESDLGGYKEYIMGVSGTSVKRFLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA T+AVLPE AE D + I +D+RIDT R+SG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAVTIAVLPEPAEDDEEVFIDEKDLRIDTFRSSGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTG++V E+SQH+N+ +AM+VL+AR+ D E ++ E SA R Q+G Sbjct: 240 TDSAVRITHIPTGVVVSCQDERSQHKNKAKAMRVLKARIRDAEVQKREQEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF Q R+TDHRI LTLY L+ V+QG +D +I L +H + + E Sbjct: 300 SGDRSERIRTYNFPQNRVTDHRIGLTLYNLDRVMQGELD-MITTALVSHAHRQLFGHEE 357 >gi|22297692|ref|NP_680939.1| peptide chain release factor 1 [Thermosynechococcus elongatus BP-1] gi|32171539|sp|Q8DMG9|RF1_THEEB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|22293869|dbj|BAC07701.1| peptide chain release factor 1 [Thermosynechococcus elongatus BP-1] Length = 364 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+++ + K+ AA+ ++ + Q+ D Sbjct: 8 EKLRTVEQTFTELTRRLADPDVAVNPTEFQKVARSRAALEETVNAYHEWQSLNQQLVDAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + ++ E+R +A+ E+ + I +LE + LLLP+D +D+K+ +LEIRAG GG Sbjct: 68 QLHKEAANEPELRQMAEEEIAHLSHRIAQLEERLKILLLPRDPNDEKNIMLEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA ++ GDL RMY RYA + W+V ++S S + GG+KE + I G V+S++K+ESGVH Sbjct: 128 EAGIWAGDLVRMYSRYAKTQGWQVTLVSESLAEMGGFKEAILEIKGDRVYSKLKYESGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEASGR+HTS ATVAV+PE E++V+I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEASGRIHTSTATVAVMPEVDEVEVEIDPKDIELTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ +N+ RA ++LRA+LY+++ + ++ R+ Q+G+GDR Sbjct: 248 VDLYHKPTGIRIFCTEERSQLKNKERAFQILRAKLYEIKLREQQEAITSMRRSQVGTGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ L VL+G ++ II ++ Q + + + Sbjct: 308 SEKIRTYNYKDDRVTDHRLGQNFS-LSSVLEGDLEPIIQACISRDQQEQLAQLA 360 >gi|78778239|ref|YP_394554.1| peptide chain release factor 1 [Sulfurimonas denitrificans DSM 1251] gi|119361635|sp|Q30NW2|RF1_SULDN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78498779|gb|ABB45319.1| bacterial peptide chain release factor 1 (bRF-1) [Sulfurimonas denitrificans DSM 1251] Length = 355 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 177/358 (49%), Positives = 251/358 (70%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ NR+ E+ +S + L++E +++ I+ K Y + Sbjct: 1 MLADKLTPFINRYNELGEMLSSPDITSDIKRMTTLSKERSSLEKIVEKAQEYKSVISQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ D+E+ ++A+ E+ +E +I LEN+I LLLPKD +DD++ I+E+RAG Sbjct: 61 DTKEML----YDAEMAEMAKEELKELEIQIPILENDIKLLLLPKDPNDDRNIIVELRAGA 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+FVG+LF Y RYA L+ WKVE+LSSS +D GGYKEI+A I G V+SR+K+E Sbjct: 117 GGDEAAIFVGNLFEAYTRYADLKDWKVEILSSSPSDAGGYKEIIALIRGEQVYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE+ GRVHTSA TVAV+PE ++++ I D++ID MR+SG GGQ VNTT Sbjct: 177 GTHRVQRVPATESQGRVHTSAITVAVMPEVDDVEIQINENDLKIDVMRSSGCGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++VT +KSQH+N+ +AMKVL+ARLYD+E + + SANR Q+G+ Sbjct: 237 DSAVRITHLPTGLVVTNQDQKSQHKNKEKAMKVLKARLYDLEMQEAIAKDSANRSAQVGT 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSAS 356 GDRS RIRTYN+ Q R++DHRI LTLY+L ++QG + D+II PL+ HQ+K++ +A Sbjct: 297 GDRSGRIRTYNYPQNRMSDHRITLTLYRLAEIMQGGLMDEIIEPLIADHQSKIVEAAG 354 >gi|289549312|ref|YP_003474300.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484] gi|289182929|gb|ADC90173.1| peptide chain release factor 1 [Thermocrinis albus DSM 14484] Length = 359 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 233/355 (65%), Gaps = 8/355 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ + R+ +++ + + V + ++++E + + Y + +E ++ Sbjct: 7 EDKLNLAEKRYLQLQAEVLDPDIVKDRLKFAQISKELKELEELHRLHQEYRKILKELEET 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + + ++ + +EKE+ E I LLPKD D K+ ILEIRAG GG Sbjct: 67 KELLKNPELEPLAKEE----IKRLEKELESTEKRIKIHLLPKDERDSKNVILEIRAGVGG 122 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF DL MY+RYA + WK +LS+ GGYKE++A + G G +SR+K+ESGV Sbjct: 123 EEAALFARDLLHMYQRYAEEKGWKFSILSAQKTGLGGYKEVIALVEGEGAYSRLKYESGV 182 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GR+HTS ATVAVLPEA E +V I +D++I+T RAS +GGQ+VNTT++ Sbjct: 183 HRVQRVPVTEAGGRIHTSTATVAVLPEADETEVHIDPKDLKIETFRASSAGGQYVNTTET 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQ+QNR++A+K+L ARL D ++ E + ++ QIG+G+ Sbjct: 243 AVRITHLPTGIVVTCQDERSQYQNRMKALKILYARLKDFYDRQKREELAKEKREQIGTGE 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSE+IRTYNF Q R+TDHRINLT+Y+L+ VL+G +D+II+ L+ + + + + Sbjct: 303 RSEKIRTYNFIQNRVTDHRINLTIYRLQDVLEGKLDEIIDALIEHDVEQKLKAMN 357 >gi|281358665|ref|ZP_06245143.1| peptide chain release factor 1 [Victivallis vadensis ATCC BAA-548] gi|281314895|gb|EFA98930.1| peptide chain release factor 1 [Victivallis vadensis ATCC BAA-548] Length = 362 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 149/360 (41%), Positives = 235/360 (65%), Gaps = 8/360 (2%) Query: 3 FLSHK---QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKK 56 + I +L RFAE+E +++ ++++E+ + + K + + Sbjct: 1 MVPEDIAGYIENLHGRFAELEAALADPAIYARGAECRRVSQEHRKLETLFRKFDDWRKAL 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 E D ++ +D+E+R+L ++ +E+ ++LE +I LLP D +D K+ I+ I Sbjct: 61 AELADNREMLT-AETDAELRELIAADIADLEERAQKLEADIQISLLPPDPNDAKNIIVGI 119 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 + GG EAALF G+LFR Y ++A + W++EVL +D + GG K++ ++SG V+S M Sbjct: 120 KPAAGGDEAALFAGELFRAYMKFAEKKGWRIEVLDQTDTELGGIKDVSFSLSGDEVYSLM 179 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ESGVHRVQRVPATEA GR+HTS TVAV+PEA E+++DI ED+R D R+SG GGQ Sbjct: 180 KYESGVHRVQRVPATEAGGRIHTSTVTVAVMPEAEEVELDIRPEDLRFDVFRSSGPGGQC 239 Query: 237 VNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVR+THIPTGI + + EKSQH+N+ A+++L ARL + +++ A++++A+++ Sbjct: 240 VNTTDSAVRVTHIPTGIAVASQQEKSQHRNKEIALRILYARLLEHKQQEEADKQAADKRS 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+G+GDRSERIRTYNF Q R+TDHR N+ + L +++G +D I++ +L + + Sbjct: 300 QVGTGDRSERIRTYNFPQNRVTDHRFNVNTFDLPKLMEGELDLILDQILMIACERRLDQL 359 >gi|326332906|ref|ZP_08199163.1| peptide chain release factor 1 [Nocardioidaceae bacterium Broad-1] gi|325949264|gb|EGD41347.1| peptide chain release factor 1 [Nocardioidaceae bacterium Broad-1] Length = 359 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 152/364 (41%), Positives = 212/364 (58%), Gaps = 18/364 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEE 59 + + L +E R++E + KL + YA +S II + Q + Sbjct: 1 MSQFEAVEGLIEEHEGLEKRLAEPETHADARLAKKLNQRYAELSSIIDAYRSWQQLGDDI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + G+ + +E + + E + LL+P+D DDK ILE+++G Sbjct: 61 EAARELAGEDPAFAEEAEAL-------VPQREAAEERLRRLLVPRDPTDDKDAILEVKSG 113 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGV 172 GG E+ALF GDL RMY RYA + WK+E L ++++D GGYK + + GR Sbjct: 114 EGGEESALFAGDLLRMYTRYAERQGWKLEFLDATESDLGGYKSVTVAVKAKGNPEPGRAP 173 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 ++ +KFE GVHRVQRVP TE+ GRVHTSAA V V+PEA +DV+I D+RID R+SG Sbjct: 174 YALLKFEGGVHRVQRVPVTESQGRVHTSAAGVLVVPEAEPVDVEINDNDLRIDVYRSSGP 233 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQ VNTTDSAVRITHIPTGI+V+ +EKSQ QN+ +AM+VLR+RL + E S Sbjct: 234 GGQSVNTTDSAVRITHIPTGIVVSMQNEKSQLQNKEQAMRVLRSRLLQAAQDAADAEASD 293 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+ Q+ + DRSERIRTYNF + RI+DHR Y L+ VL G ++ +I + A A Sbjct: 294 ARRSQVRTVDRSERIRTYNFPENRISDHRTGYKSYNLDQVLDGDLEPVIGSAVDADLAAR 353 Query: 352 IGSA 355 + S Sbjct: 354 LASL 357 >gi|16332286|ref|NP_443014.1| peptide chain release factor 1 [Synechocystis sp. PCC 6803] gi|2500139|sp|P74707|RF1_SYNY3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|1653916|dbj|BAA18826.1| peptide chain release factor [Synechocystis sp. PCC 6803] Length = 365 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 230/355 (64%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ + E+ +++ + D ++ + +++ + + + +++ + Sbjct: 8 DKLASVEQTYQELTRMLADPDIATNPDELQRVAKARSSLEETVDTYETWKRSQEDLKGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +D E+R++AQ+EV +E I ELE + LLLPKD +D+K+ +LEIRAGTGG Sbjct: 68 QIVKESGNDPEMREMAQLEVEELENAIGELEKRLTILLLPKDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + WKV +LS S D GG+KE + + G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYTRYAESQGWKVSLLSESLADMGGFKEAILEVKGDRVYSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVKIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LYD+ + + S+NR+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYDMMLQEQNDAISSNRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ R+TDHR+ + L L+G I II ++ Q + + +E Sbjct: 308 SEKIRTYNYKDNRVTDHRLGRN-FDLNTALEGEIHTIIESCISQDQQERLAELAE 361 >gi|300789609|ref|YP_003769900.1| peptide chain release factor RF-1 [Amycolatopsis mediterranei U32] gi|299799123|gb|ADJ49498.1| peptide chain release factor RF-1 [Amycolatopsis mediterranei U32] Length = 356 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 153/362 (42%), Positives = 219/362 (60%), Gaps = 16/362 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + L AE+E ++++ KL YA ++P++ + D + + Sbjct: 1 MDSSSLKGLLAEHAELETQLADPAVHADQARARKLGRRYAELTPVVRAVHDLDTVRDDLA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E + I +LE+ + LLLP+D D ++EI++G Sbjct: 61 ATREM-------ASEDAEFAAEAEELAARIPDLESRLTELLLPRDPYDGSDVVMEIKSGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSR 175 GG E+ALF GDL RMY RYA WK EVL S D+D GG+K++ +I GV+SR Sbjct: 114 GGEESALFAGDLLRMYLRYAERHGWKAEVLDSVDSDLGGFKDVTLSIKSKAAAVDGVWSR 173 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +KFE GVHRVQRVPATE+ GR+HTSA+ V + PE E++V+I D+RID R+SG GGQ Sbjct: 174 LKFEGGVHRVQRVPATESQGRIHTSASGVLIYPEPEEVEVEIDPNDLRIDVFRSSGPGGQ 233 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +EKSQ QNR RA++VL+ARL V + A + S R+ Sbjct: 234 SVNTTDSAVRITHLPTGIVVSCQNEKSQIQNRARALQVLQARLQAVAEEEAAAKASDARR 293 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+ + DRSER+RTYNF + RI+DHR+N Y L+ VL G +D +++ L TA + + + + Sbjct: 294 SQVRTVDRSERVRTYNFPENRISDHRVNYKAYNLDQVLDGDLDGVLDALATADREERLAA 353 Query: 355 AS 356 S Sbjct: 354 QS 355 >gi|317487895|ref|ZP_07946487.1| peptide chain release factor 1 [Eggerthella sp. 1_3_56FAA] gi|325830623|ref|ZP_08164044.1| peptide chain release factor 1 [Eggerthella sp. HGA1] gi|316913021|gb|EFV34538.1| peptide chain release factor 1 [Eggerthella sp. 1_3_56FAA] gi|325487369|gb|EGC89811.1| peptide chain release factor 1 [Eggerthella sp. HGA1] Length = 357 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 158/357 (44%), Positives = 224/357 (62%), Gaps = 12/357 (3%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + +++ +M + + + L +EYA P+ K Y Q + + Sbjct: 6 MREKLTKIIEAYEDVQAKMGDPAVLADQKEYNRLAKEYANQGPLAKKAREYVQAADDLAE 65 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++++ A E+ IE ++ LE +I ++L+P D DDK I+EIRA G Sbjct: 66 AREMLA----DPDMKEFALEEIAGIEAKLPALEEDIKFMLIPADPADDKDIIVEIRAAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F G+L++MYER+A+ + WK E + S ++ GG+KEI + G V+S MKFESG Sbjct: 122 GDEAAIFAGELYKMYERFASAQGWKTETMDMSASEAGGFKEIQFKVKGDHVYSVMKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E++V+I D+RID RA G GGQ VNTTD Sbjct: 182 VHRVQRVPKTESQGRIHTSTATVAVLPEADEVEVEINENDLRIDVYRAGGPGGQCVNTTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V + +KSQ QN++ AM VLRARLY+ A R QIGSG Sbjct: 242 SAVRITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQAAEGAKRLAQIGSG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSE+IRTYN Q R+TDHRI Y VL G + D+I L A +A+ + +A Sbjct: 302 DRSEKIRTYNGPQDRVTDHRIGFNGTYN--GVLLGDGLGDVITALQAADRAQKLEAA 356 >gi|65317305|ref|ZP_00390264.1| COG0216: Protein chain release factor A [Bacillus anthracis str. A2012] Length = 323 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 160/317 (50%), Positives = 223/317 (70%), Gaps = 2/317 (0%) Query: 41 AISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYL 100 I + Y ++ +D ++ D D+E+R++ + EV +E + + L + L Sbjct: 8 DIQETVEVYREYKDVREXLKDAKAMLEDK-LDAEMREMVKEEVSELESQEKTLSERLKIL 66 Query: 101 LLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY 160 L+PKD +DDK+ I+E+R GG EAALF GDL+RMY RYA ++ WK E++ +S + GGY Sbjct: 67 LVPKDPNDDKNVIVEVRGAAGGDEAALFAGDLYRMYSRYAEVQGWKTEIIEASYTELGGY 126 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE 220 KEI+ I+G+G F+++KFE+G HRVQRVP TE+ GR+HTS ATVAVLPEA E+++DI + Sbjct: 127 KEIIFMINGKGAFAKLKFENGAHRVQRVPETESGGRIHTSTATVAVLPEAEEVEIDIHEK 186 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R+DT +SG GGQ VNTT SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD Sbjct: 187 DVRVDTFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYD 246 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 R+ E NRK +G+GDRSERIRTYNF Q R+TDHRI LT+ KL+ +LQG +DD Sbjct: 247 KFRQEAQAEYDQNRKQAVGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILQGKLDDF 306 Query: 340 INPLLTAHQAKMIGSAS 356 IN L+ QA+ + +A Sbjct: 307 INALVMEDQAQRMEAAE 323 >gi|325107093|ref|YP_004268161.1| bacterial peptide chain release factor 1 (bRF-1) [Planctomyces brasiliensis DSM 5305] gi|324967361|gb|ADY58139.1| bacterial peptide chain release factor 1 (bRF-1) [Planctomyces brasiliensis DSM 5305] Length = 358 Score = 253 bits (647), Expect = 2e-65, Method: Composition-based stats. Identities = 144/358 (40%), Positives = 217/358 (60%), Gaps = 7/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 + RF E+E +M++ + K + +EY + + + Y + + Sbjct: 1 MFPS--LETKYQRFLELEKQMADPDVLSDPQKMLAIQKEYGGLKKVAHAVRDYHTLEADI 58 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + + + ++ + E + L D+ I+EIRAG Sbjct: 59 EAAEMMLEEEDDPDDREYAQSELDALEKRRDKMAEE-LEDLATAGDSITRGGLIMEIRAG 117 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF +L+ MY RY R WK EV+ + GG KE+V ++SG G F ++FE Sbjct: 118 TGGDEAALFALNLYEMYSRYIETRGWKKEVMDFHPTEMGGVKEVVFSVSGEGAFHELQFE 177 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE GR+HTSAATVAVLPEA E+++DI ED+++DT RASG GGQ VN Sbjct: 178 SGGHRVQRVPETETQGRIHTSAATVAVLPEADEVEIDIKPEDLKVDTFRASGPGGQKVNK 237 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITH+PTG +V EKSQH+NR AM+VLR+R+ + +++ +ER++ R+ IG Sbjct: 238 TESAIRITHLPTGTVVTCQDEKSQHKNRASAMRVLRSRILENQQQAADSERASQRRTLIG 297 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRS RIRTYN+ QGR+TDHRI LTL+KL+ ++ G ++++++ LL + + + Sbjct: 298 TGDRSSRIRTYNYPQGRVTDHRIGLTLHKLDQIMAGNLEELVSGLLEFDRQERLKGEG 355 >gi|307299656|ref|ZP_07579452.1| peptide chain release factor 1 [Thermotogales bacterium mesG1.Ag.4.2] gi|306914708|gb|EFN45098.1| peptide chain release factor 1 [Thermotogales bacterium mesG1.Ag.4.2] Length = 360 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 166/349 (47%), Positives = 230/349 (65%), Gaps = 7/349 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + RF E+E +S+ KL +++A +S II+ S D K E ++ H + Sbjct: 7 MEVFRERFKEVEKELSKPEVASDPDKLMEYGKKHAELSEIINLYSEIDSMKGELEEWHEM 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +++ + +E I E + LL+P D+ ++ I+EIRAGTGG EA Sbjct: 67 KATAEENE--QEVIANTISDLENRIARKELNLKGLLVPDLADE-RNIIIEIRAGTGGEEA 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF DLFRMY RYA WK E++ S++ D GG+KE++ I GR VFS++K+ESGVHRV Sbjct: 124 ALFAADLFRMYTRYAERNNWKSEIIDSNETDIGGFKEVIFQIRGRSVFSKLKYESGVHRV 183 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE+ GR+HTS ATVAVLPE +E +V I D+RIDT R+SG+GGQHVN TDSAVR Sbjct: 184 QRVPTTESGGRIHTSTATVAVLPEVSETEVKIDPADLRIDTYRSSGAGGQHVNKTDSAVR 243 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H PTGI+V E+SQHQN+ RA+++LRARLY++ + NE + R+ QIG+G+RSE Sbjct: 244 IVHEPTGIVVAVQKERSQHQNKARALEILRARLYEMYSSKAENEITEARRTQIGTGERSE 303 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IRTYNF Q R+TDHRIN T Y+L YV+ G +D+++ L A K + Sbjct: 304 KIRTYNFPQNRVTDHRINFTSYRLLYVMDGDLDELVTELSAADINKRLE 352 >gi|282899982|ref|ZP_06307943.1| Peptide chain release factor 1 [Cylindrospermopsis raciborskii CS-505] gi|281195252|gb|EFA70188.1| Peptide chain release factor 1 [Cylindrospermopsis raciborskii CS-505] Length = 364 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 232/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+++ S D Y K+ + +++ ++ + ++E Sbjct: 8 EKLKSVEQTFHELTRRLADPDTAKSPDEYQKIAKSRSSLEEVVIAYETWKNSQEELVGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D E+ ++A +EV +E +I LE ++ LLLP+D +D+K+ +LEIRAGTGG Sbjct: 68 QILKESNGDPELHEMATMEVKDLENKIEHLEEQLKILLLPRDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W+V+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYADTQGWRVKLVSESPGEMGGFKEVILEIQGDSVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDDVEVHIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEIKLREQQEAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ L VL+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDSRATDHRLGQNFT-LSPVLEGDLETLIQSCISQDQQERLAELA 360 >gi|40062641|gb|AAR37562.1| peptide chain release factor 1 [uncultured marine bacterium 313] Length = 358 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 174/356 (48%), Positives = 243/356 (68%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++I + N + +E ++ S ++K ++EY+ I II + Y ++E+ + Sbjct: 1 MIPLEKIQQIVNTYKTLEKELASSDIGKKDFVKKSKEYSGIGEIIDEAKGYLDFEKEKLE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L +I D SD E+ L + E+ + K+ + E + LLPKD D K+ I+EIRAGTG Sbjct: 61 LDKIIEDKKSDKEMIQLVKSELNELLKKKQSYEKILKVYLLPKDEADSKNAIVEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL++MYE+ +KW E+++ S ++ GG+KE++ I G ++S +KFESG Sbjct: 121 GLEATLFVADLYKMYEKVCLNKKWSFEIINLSKSEAGGFKEVILLIKGANIYSFLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+DV I +D+RID R++G+GGQ VNTTD Sbjct: 181 VHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKIEDKDLRIDVFRSTGAGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTGI+VT EKSQH+NR + MK+LR+R+Y+ ER++ ERS +RK QIG+G Sbjct: 241 SAVRITHIPTGIVVTNQDEKSQHKNRAKGMKILRSRIYESEREKKEKERSRDRKNQIGTG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHRINLT++KL+ L G +++ L Q + + Sbjct: 301 DRSERIRTYNFPQGRVTDHRINLTIHKLQEFLNGDAFEELGQNLRIQDQEIKLANL 356 >gi|303283714|ref|XP_003061148.1| predicted protein [Micromonas pusilla CCMP1545] gi|226457499|gb|EEH54798.1| predicted protein [Micromonas pusilla CCMP1545] Length = 404 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 222/354 (62%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ E+ R+++ + KL++ ++ ++ + + Y + +E Q+ Sbjct: 47 DKLESSTQTHKELTFRLADPDVASNAKEFQKLSKALGELTSVVDQYARYKECIEELQEAK 106 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+ ++A+ E A+ +E+ LE + LLP+D D+K+ +LEIRAGTGG Sbjct: 107 AMVKDAAGDLEMGEMAREEATALNEEMDALEESMTMALLPRDPLDEKNIVLEIRAGTGGD 166 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA ++ GDL+RMY RYA + WK VL+++ D GGYKEIV + G V+S +K+E+GVH Sbjct: 167 EAGIWAGDLWRMYSRYADSKGWKASVLTTNPADSGGYKEIVVELVGDSVYSELKWEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+ TS ATVAV+PE E++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 227 RVQRVPATESQGRIQTSTATVAVMPEVDEVEVKIDDKDIELTTARSGGAGGQNVNKVETA 286 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E++Q +NR+RAM++LR+RL++++ + A E + RK Q+GSG R Sbjct: 287 VDLVHKPTGIRIFCTEERTQLKNRIRAMQILRSRLFELQMEEQAKEVAGRRKAQVGSGAR 346 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R++DHR+ + LE + G + I Q + + + Sbjct: 347 SEKIRTYNYKDNRVSDHRVG-ENFPLEGFMNGDVSPAIGACQAMEQREKLEELN 399 >gi|307154812|ref|YP_003890196.1| peptide chain release factor 1 [Cyanothece sp. PCC 7822] gi|306985040|gb|ADN16921.1| peptide chain release factor 1 [Cyanothece sp. PCC 7822] Length = 370 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 232/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + D ++ + +++ ++ + + K+E Sbjct: 8 EKLKSVELTYRELTRRLADPDIATNPDELQRVAKARSSLEETVNTYETWQKTKEELAGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A +EV +E+++ LE+ + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKESAGDLELREMAALEVQELEQQLETLESRLKVLLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA ++W V+++S S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQRWAVKLVSESLADMGGFKEAILEIQGDSVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE E++V I +D+ I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVQIDPKDLEISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLREQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ + L+G ID+II ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFSLVGA-LEGDIDEIIQSCISRDQQEQLAELA 360 >gi|295105808|emb|CBL03351.1| bacterial peptide chain release factor 1 (bRF-1) [Gordonibacter pamelaeae 7-10-1-b] Length = 357 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 162/356 (45%), Positives = 223/356 (62%), Gaps = 12/356 (3%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + + +++ RM + + + L +EYA+ P+ K Y Q + Sbjct: 6 MREKLEKIIQAYEDLQGRMGDPAVLADQKEYNRLAKEYASQGPLAKKAREYVQASDDLAA 65 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++R+ AQ E+ IE ++ LE +I ++L+P D DDK I+EIRA G Sbjct: 66 AKEMMA----DPDMREFAQEEIAGIEAKLPALEEDIKFMLIPADPADDKDIIVEIRAAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL++MYER+A + WK E + S ++ GG+KEI + G V+S MKFESG Sbjct: 122 GDEAAIFAGDLYKMYERFAGAQGWKTETMDVSASEAGGFKEIQFKVKGDHVYSVMKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS ATVAVLPEA E++VDI D+RID RA G GGQ VNTTD Sbjct: 182 VHRVQRVPKTESQGRIHTSTATVAVLPEADEVEVDINENDLRIDVYRAGGPGGQCVNTTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+P+G++V + +KSQ QN++ AM VLRARLY+ A R QIGSG Sbjct: 242 SAVRITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQAAEGAERLAQIGSG 301 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 DRSE+IRTYN Q R+TDHRI Y VL G + D+I L A +A+ + + Sbjct: 302 DRSEKIRTYNGPQDRVTDHRIGYNGTYN--GVLLGDGLGDVITALQAADRAQKLEA 355 >gi|94676864|ref|YP_588739.1| peptide chain release factor 1 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|119361509|sp|Q1LTH5|RF1_BAUCH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|94220014|gb|ABF14173.1| peptide chain release factor 1 [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 366 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 224/362 (61%), Gaps = 5/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R+ E+E + S +L ++EYA ++ I + + Q ++ Sbjct: 1 MKPSIITKLKVLQERYYEVETLLGNSEVAKDRERLRILSKEYAQLTDIHTCFQHWQQVQE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ D ++D + ++L + KD +D++ C +E+R Sbjct: 61 NISITGPMLEDPEMHDMVQDELNKLHSLLSTLEQQLLTLLLQKDSNKDPNDERGCFIEVR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF GDLFRMY RYA + W+++V+S+S GGYKEI+ +S + ++K Sbjct: 121 AGTGGDEAALFAGDLFRMYSRYAEIHSWQIDVISASSGPHGGYKEIIVKMSHDNAYGQLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQR+P TE+ GR+HTS+ TVAV+P+ + +I EDIR+DT R+SG+GGQH Sbjct: 181 FESGGHRVQRIPETESQGRIHTSSCTVAVIPDILHAELPEISPEDIRVDTFRSSGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SA+RITH+PTG++V E+SQH+N+ +AM VL ARL E + E S R+ Sbjct: 241 VNTTESAIRITHLPTGLVVECQDERSQHKNKAKAMAVLSARLRAAEAQCRQQEESCMRRN 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +GSG RS+RIRTYNF QGRITDHRI T Y+L V++G ++ ++ P++ +Q + + Sbjct: 301 LLGSGYRSDRIRTYNFPQGRITDHRIGFTTYRLNEVIEGKLEILLQPIIQEYQTNQLIAL 360 Query: 356 SE 357 SE Sbjct: 361 SE 362 >gi|282889838|ref|ZP_06298377.1| hypothetical protein pah_c004o248 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500412|gb|EFB42692.1| hypothetical protein pah_c004o248 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 354 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 151/354 (42%), Positives = 234/354 (66%), Gaps = 6/354 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +I L ++ ++E + Y LT+E+A +S + S + ++ +D Sbjct: 1 MEAKITKLLSKLPDLEEALGNPEVFQDQKRYRALTQEHAYLSELKSVWEKMVKSNKQIED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + +E++++ + + + + +L+ ++ LL+P D +D ++ I+E+RAGTG Sbjct: 61 NQEMLADEAN-AELKEVLEEDTRNLRSLVEKLQVDLENLLVPPDPNDHRNTIVELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY+ YA + W+ E+LS + ++ GG+KE V +SG+ V+ + +E G Sbjct: 120 GDEAALFVGDCVRMYKLYADSKGWRYELLSCTPSEMGGFKEYVMVLSGQNVYRFLHYEGG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HRVQRVP TEA GRVHTSA TVA+L + +V I +D+R+DT R+SG+GGQHVNTT Sbjct: 180 THRVQRVPETEAQGRVHTSAMTVAILLEPDEDTEVVIDEKDLRVDTYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+TH PTGI+V E+SQH+N+ +AM++L+A++ + E+++ E ++NR Q+GS Sbjct: 240 DSAVRLTHNPTGIVVYCQEERSQHKNKEKAMRLLKAKIVEAEQRKKQEEIASNRSQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 GDRSERIRTYNF Q RITDHRINLT Y L+ V++G +D+I L+T + + Sbjct: 300 GDRSERIRTYNFPQNRITDHRINLTRYNLDRVMEGDLDEITLALVTHFHQEKLK 353 >gi|291460253|ref|ZP_06599643.1| peptide chain release factor 1 [Oribacterium sp. oral taxon 078 str. F0262] gi|291417200|gb|EFE90919.1| peptide chain release factor 1 [Oribacterium sp. oral taxon 078 str. F0262] Length = 360 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 154/359 (42%), Positives = 241/359 (67%), Gaps = 5/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + + +++ + E+ L ++ + Y KL E + + P+ + + ++ E Sbjct: 1 MRMFENLEEVRRHYEELMLSLTRPELSNDIARYRKLIREQSELEPLYKTYLAFRKAEESE 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D ++ D E+ ++A+ E+ ++E L ++ LLLPKD +DDK+ ++EIR G Sbjct: 61 RDALELLQ-KEKDPELLEMAKEELQNAKEEQSLLGEKLRLLLLPKDENDDKNIVMEIRGG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF +L+RMY YA R ++ E++S + GG KE++ + G+G +SR+K+E Sbjct: 120 AGGEEAALFAAELYRMYMSYAERRGFRTELVSFHETGLGGLKEVIFIVDGQGAYSRLKYE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTS ATVAV+PEA E++V+I D+R++ R+SG+GGQH+N Sbjct: 180 SGVHRVQRVPETESGGRIHTSTATVAVMPEAGEVEVEIKPSDVRMEVFRSSGAGGQHINK 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+ HIP+G++ E+SQ QNR +AM++LRARLY++E ++ E +A ++ Q+G Sbjct: 240 TSSAVRLIHIPSGMVAECQEERSQLQNREKAMRLLRARLYEIESRKRHEESAAEKRSQLG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +G+RSE+IRTYNF QGR+TDHRI L+LY LE +L G +D +I+PL+TA QA+ + E Sbjct: 300 TGERSEKIRTYNFPQGRVTDHRIKLSLYCLEEILGGDLDPLIDPLITAEQAEKLSRMEE 358 >gi|291276374|ref|YP_003516146.1| peptide chain release factor 1 [Helicobacter mustelae 12198] gi|290963568|emb|CBG39400.1| peptide chain release factor 1 [Helicobacter mustelae 12198] Length = 352 Score = 253 bits (646), Expect = 3e-65, Method: Composition-based stats. Identities = 173/355 (48%), Positives = 238/355 (67%), Gaps = 8/355 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ + R EI + + + A L++E + I I + Y + Sbjct: 1 MLISKLLPIIKRHDEITALLVDPAITSDIKALTNLSKEQSEIQEITQQTKAYMATLDTIR 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL +I + D + +A+ E+ + + + LE I LL+PKD +D K+ LE+RAGT Sbjct: 61 DLEDLILE---DKALAGMAKEELEVLRERAKNLEESIKTLLIPKDPNDGKNIYLELRAGT 117 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLFR Y RYA L+KWKVE++SSS+N+ GGYKEI+A I G GV+SR+KFES Sbjct: 118 GGDEAGIFVGDLFRAYCRYADLKKWKVEIISSSENNVGGYKEIIALIKGEGVYSRLKFES 177 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVPATE+ GR+HTSA TVA++PE E++V + D+RI+ RA G GGQ VNTT Sbjct: 178 GTHRVQRVPATESQGRIHTSAITVALMPEVDEVEVVLNPSDLRIEVFRAGGHGGQCVNTT 237 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI V+ EKSQH+N+ +A+K+LR+R+YD + ++ + + RK Q+GS Sbjct: 238 DSAVRITHIPTGINVSIQDEKSQHKNKEKALKILRSRIYDAQMEQQQVQNAQTRKNQVGS 297 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIG 353 GDRSERIRTYN+ Q R+TDHRI LTLY LE V+ G +D II+PL ++ + Sbjct: 298 GDRSERIRTYNYPQNRLTDHRIGLTLYSLEEVMLSGNLDPIIDPLTAHARSVELE 352 >gi|298491428|ref|YP_003721605.1| peptide chain release factor 1 ['Nostoc azollae' 0708] gi|298233346|gb|ADI64482.1| peptide chain release factor 1 ['Nostoc azollae' 0708] Length = 364 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 138/353 (39%), Positives = 235/353 (66%), Gaps = 5/353 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+++ + D Y K+ + +++ +++ + ++E Sbjct: 8 EKLQSVEQTFHELTRRLADPDTAKNPDEYQKIAKSRSSLEEVVNTYETWKIAQEELVGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V+ + NSD E++++A +EV +E+++ LE+ + LLLP D +DDK+ +LEIRAGTGG Sbjct: 68 QVLKESNSDPELQEMAALEVKELEEKLEYLESRLKVLLLPCDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + WKV+++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLLRMYSRYADTQGWKVKLVSQSLGEMGGFKEVILEIQGDRVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRVHTS AT+A++PE ++++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATESGGRVHTSTATIAIMPEVDDVEIHIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 ADLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEIKLREQQEAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYN+ R+TDHR+ L VL+G ++ I+ ++ +Q + + Sbjct: 308 SEKIRTYNYKDSRVTDHRLGNNFT-LNPVLEGDLETIVQSCISQYQQERLAEL 359 >gi|308177036|ref|YP_003916442.1| peptide chain release factor 1 [Arthrobacter arilaitensis Re117] gi|307744499|emb|CBT75471.1| peptide chain release factor 1 [Arthrobacter arilaitensis Re117] Length = 357 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 211/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L A I+ ++S+ KL A ++ I+ + + + + Sbjct: 3 ESVKSLLEEHAAIQAQLSDPAVYADQALARKLGRRSAQLNGIVEAYNKWQTATDDLEAAQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + +E +E+ +LE ++ LL+P+D +D ++ ILE++ G GG Sbjct: 63 EMADEDPDFAEEVQAL-------TEELPQLEEKLRRLLIPRDENDGRNVILEVKGGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF DL RMY R+A + WKVE++S +++D GGYK+ I GV++++K Sbjct: 116 EAALFAADLLRMYTRFAEHKGWKVEMISFNESDLGGYKDAQVAIKGNSNDPAEGVYAQLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVP TE+ GR+HTSAA V VLPE E + DI D++ID R+SG GGQ Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDEPEEVDIHQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR AM+VLR+RL +++ + E SA R Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQIQNREAAMRVLRSRLLAHQQEIIDKENSAQRAS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYN+ + RI DHR Y L+ V+ G + ++ + + + + + Sbjct: 296 QIRTMDRSERIRTYNYPENRIADHRTGYKAYNLDAVMDGDLQPVVESCIQMDEEERLAAL 355 Query: 356 SE 357 E Sbjct: 356 GE 357 >gi|24212814|ref|NP_710295.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai str. 56601] gi|45656013|ref|YP_000099.1| peptide chain release factor 1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|32171561|sp|Q8F9S6|RF1_LEPIN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|59798055|sp|Q72W38|RF1_LEPIC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|24193465|gb|AAN47313.1| peptide chain release factor 1 [Leptospira interrogans serovar Lai str. 56601] gi|45599246|gb|AAS68736.1| peptide chain release factor 1 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 354 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 148/351 (42%), Positives = 219/351 (62%), Gaps = 2/351 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ ++ I ++++ + L +E + ++P+ K+ Y + ++ +D Sbjct: 1 MIDRLEKIQEKYLRISEELNQAKDPSSLKNLYKERSRLTPLYLKVEEYLKIYKDRKDAEE 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D E+ + + E+ ++ LE E LLLP D + K+ ++EIRAGTGG E Sbjct: 61 LIQ-SEKDEEMHSMLKEEIREANLKLETLEREFEILLLPPDPNSGKNILVEIRAGTGGEE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LFV DLFRMY ++A +K K E++ SS GG KEI+ + + KFE G HR Sbjct: 120 AGLFVADLFRMYSKFADKQKIKTEIIDSSPTGIGGLKEIIFALEDDRAYDLFKFEGGTHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P+TE+ GR+HTSA TVAVLPEA E +V I D+RID R+SG+GGQHVNTTDSAV Sbjct: 180 VQRIPSTESGGRIHTSAVTVAVLPEADEEEVQINESDLRIDVYRSSGAGGQHVNTTDSAV 239 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V EKSQH+N+ +A+++L AR+ + + + A +K IGSGDRS Sbjct: 240 RITHIPTGVVVACQDEKSQHKNKAKALRILSARILEKQAEDKKQASDAIKKQMIGSGDRS 299 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ER+RTYNF QGR TDHRI T + L +++G +D++I L + + I Sbjct: 300 ERVRTYNFPQGRCTDHRIGFTSHNLSAIMEGDLDELIGALTEEDRVRKISE 350 >gi|220906439|ref|YP_002481750.1| peptide chain release factor 1 [Cyanothece sp. PCC 7425] gi|254790876|sp|B8HXV0|RF1_CYAP4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219863050|gb|ACL43389.1| peptide chain release factor 1 [Cyanothece sp. PCC 7425] Length = 364 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 230/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ R+++ + + ++ + A++ + + +Q + Sbjct: 8 DKLKSVELTFHELTRRLADPEVATDPEEFQRVAKARASLEETVDTYDTWKTVQQHLAEAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E++++A EV + ++ LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QIAREAASDPELQEMAVQEVNELTEKSAHLEQRLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL R+Y RYA ++W+V+++S S + GG+KE + I G V+S++K+E+GVH Sbjct: 128 EASIWAGDLVRLYSRYAESQRWRVKLVSESLGEMGGFKEAILEIQGEQVYSKLKYEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEASGRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEASGRVHTSTATVAIMPEVDEVEVKIDPKDIELTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY+++ + +E ++ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMKLQEQQSEITSRRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ + L VL+G I+ II +T Q + + + Sbjct: 308 SEKIRTYNYKDNRATDHRLG-QNFPLNQVLEGDIEGIIQACITQDQQEQLAELA 360 >gi|86609051|ref|YP_477813.1| peptide chain release factor 1 [Synechococcus sp. JA-2-3B'a(2-13)] gi|119361626|sp|Q2JL68|RF1_SYNJB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|86557593|gb|ABD02550.1| peptide chain release factor 1 [Synechococcus sp. JA-2-3B'a(2-13)] Length = 360 Score = 253 bits (645), Expect = 4e-65, Method: Composition-based stats. Identities = 145/354 (40%), Positives = 226/354 (63%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEE---YAAISPIISKISIYDQKKQEEQDLH 63 Q+ +++ F E+ +R+++ +L +++ + + + ++ Q Sbjct: 8 DQLKNVEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQAFHDWQKLNRDLQQTE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+ +A+ E+ + +LE ++ LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 ELLRESASDPELEAMARAELEQLRARQEQLEEKLTLLLLPRDPNDDKNIMLEIRAGTGGE 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAAL+ DL RMY RYA W V + S S+ + GGYKE + I G V+S++KFE+GVH Sbjct: 128 EAALWAADLARMYTRYAEKLGWSVRLASLSEGELGGYKEAILEIQGDQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVAV+PE E++V I +DI I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAQGRVHTSTATVAVMPEVDEVEVVIDPKDIEIKTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R++Q+G+G R Sbjct: 248 VDLLHKPTGIRVFCTEERSQLQNRQRAMQILRAKLYEMKLQEQQASISSARRMQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+N + L+ +L G +DD+I + +Q +++ S Sbjct: 308 SEKIRTYNYKDNRVTDHRLN-QNFPLQPILDGELDDLIQACIGLYQKELLAELS 360 >gi|256827314|ref|YP_003151273.1| peptide chain release factor 1 [Cryptobacterium curtum DSM 15641] gi|256583457|gb|ACU94591.1| bacterial peptide chain release factor 1 (bRF-1) [Cryptobacterium curtum DSM 15641] Length = 357 Score = 252 bits (644), Expect = 4e-65, Method: Composition-based stats. Identities = 170/362 (46%), Positives = 236/362 (65%), Gaps = 15/362 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 L +++ + + +++ RMS+ + + L +EYA P+ + Y Q + Sbjct: 1 MLEKEKLEKIIEAYRDLQTRMSDPAVISDQKEYNRLAKEYAHQGPLATAARTYVQDIDDL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I SD+++R+ AQ E+ IE E+ LE++I ++L+P D DDK I+EIRAG Sbjct: 61 AEAKEMI----SDADMREFAQEEITRIENELPGLEDDIKFMLIPADPADDKDIIVEIRAG 116 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF GDLF+MY +A ++ WK+EVL++S ++ GGYKEI + G V+S MKFE Sbjct: 117 AGGDEAALFAGDLFKMYSHFADVKGWKIEVLNASASEAGGYKEIQFKVKGDKVYSEMKFE 176 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTS ATVAVLPEA E++VD+ ED+RID RA G GGQ VNT Sbjct: 177 SGVHRVQRVPKTESQGRIHTSTATVAVLPEADEVEVDVKQEDLRIDVYRAGGPGGQCVNT 236 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V + +KSQ QN++ AM VLRARLY+ + A R+ QIG Sbjct: 237 TDSAVRITHLPTGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLEEQRAAEGAERRAQIG 296 Query: 299 SGDRSERIRTYNFSQGRITDHRINLT-LYKLEYVL--QG--YIDDIINPLLTAHQAKMIG 353 +GDRSE+IRTYN Q R+TDHRI Y +L G ++D+I L A +A+ + Sbjct: 297 TGDRSEKIRTYNGPQDRVTDHRIGYNGTYN--GILMNAGGAGLEDLITALQAADRAQKLE 354 Query: 354 SA 355 A Sbjct: 355 QA 356 >gi|320449105|ref|YP_004203663.1| peptide chain release factor 1 [Thermus scotoductus SA-01] gi|320151737|gb|ADW23114.1| peptide chain release factor 1 [Thermus scotoductus SA-01] Length = 354 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 148/338 (43%), Positives = 215/338 (63%), Gaps = 8/338 (2%) Query: 24 SESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + Y L+ YA + +I+ I Y + ++ + + ++ D E++++A+ Sbjct: 20 ADPEVLKDQKRYQALSRRYAEMGEVIALIREYRKVLEDLEGVEGLLE----DPELKEVAR 75 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E A+ +LE + LLPKD D++ I+EIRAGTGG EAALF DL MY R+A Sbjct: 76 AEKEALLSRKADLEKALERHLLPKDPMDERDAIVEIRAGTGGEEAALFARDLLEMYLRFA 135 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++ E+L S D GG+ ++V + G G + K+ESGVHRVQRVPATE GR+HTS Sbjct: 136 EEMGFETEILDSHPTDLGGFSKVVFEVRGPGAYGTFKYESGVHRVQRVPATETQGRIHTS 195 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLP+A E D + +++IRID MRASG GGQ VNTTDSAVR+ H+PTGIMV Sbjct: 196 TATVAVLPKAEESDFQLNMDEIRIDVMRASGPGGQGVNTTDSAVRVVHLPTGIMVTCQDS 255 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ +NR +A+ +LR+RL +++R A + R QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 256 RSQIKNREKALMILRSRLLEMKRAEEAEKLRKTRLAQIGTGERSEKIRTYNFPQSRVTDH 315 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RI T + LE +L G++ ++ L A Q + + + +E Sbjct: 316 RIGFTTHDLEGILSGHLQPLLEALKRADQERQLEALTE 353 >gi|271963194|ref|YP_003337390.1| peptide chain release factor 1 [Streptosporangium roseum DSM 43021] gi|270506369|gb|ACZ84647.1| peptide chain release factor 1 [Streptosporangium roseum DSM 43021] Length = 350 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 153/353 (43%), Positives = 217/353 (61%), Gaps = 14/353 (3%) Query: 9 ICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L + +AE+EL++++ YA ++PII+ + + + + Sbjct: 3 LDELLSEYAELELKLADPTVHAHPAQARTFGRRYAELTPIITTYRELEGVQNDLDTAREL 62 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +E E + ELE+++ +LL+P+D +DDK I+EI+AG GG E+ Sbjct: 63 ASEDEAFAEEAKEL-------EGRVPELEDKLRHLLIPRDPNDDKDIIMEIKAGEGGEES 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS---GRGVFSRMKFESGV 182 ALF GDL RMY RYA WK E++ ++ +D GGYK++ + GV+SR+KFE GV Sbjct: 116 ALFAGDLLRMYLRYAERVGWKTELIDATHSDLGGYKDVTVALKARGDEGVWSRLKFEGGV 175 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+HTSAA V V PEA E+DV + D+RID R+SG GGQ VNTTDS Sbjct: 176 HRVQRVPVTESQGRIHTSAAGVLVYPEAEEVDVQVDPNDLRIDVYRSSGPGGQSVNTTDS 235 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTG++ +EKSQ QN+ AM++LRARL + + A RK QI + D Sbjct: 236 AVRITHIPTGVVASCQNEKSQLQNKESAMRILRARLQAIAEEEANAAAMAERKSQIRTVD 295 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RSERIRTYNF + RI+DHR+ Y L+ VL G + +I LL A A+ + + Sbjct: 296 RSERIRTYNFPENRISDHRVGFKAYNLDQVLDGDLTAVIQSLLDAEMAEKLAA 348 >gi|332712139|ref|ZP_08432067.1| bacterial peptide chain release factor 1 [Lyngbya majuscula 3L] gi|332348945|gb|EGJ28557.1| bacterial peptide chain release factor 1 [Lyngbya majuscula 3L] Length = 370 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 137/354 (38%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + ++ + A++ +++ + + +++ Sbjct: 8 EKLNSVEQTYHELTRRLADPDIATDPNELQRVAKARASLEEVVATYDNWKKTQEDLAGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + E++++A +EV ++ ++ LE E+ LLLPKD +D+K+ +LEIRAGTGG Sbjct: 68 QILKESTGEPEMQEMAALEVEELQTKVEHLERELKILLLPKDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RY+ + W+V++LS S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYSESQNWRVKLLSESLADMGGFKEAILEIQGEQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVAV+PE E+DV+I ++I I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAVMPEVDEVDVEIDPKEIEISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 VDLYHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEIKLQEQQEAVTSMRRAQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ Y L +L+G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLG-QNYSLAPLLEGDLEGLIQACISQDQQEQLEKLA 360 >gi|297182635|gb|ADI18793.1| protein chain release factor a [uncultured SAR11 cluster bacterium HF4000_37C10] Length = 358 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 173/356 (48%), Positives = 244/356 (68%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ + + + +E ++ + + ++ Y++I +I++ Y K+E+ + Sbjct: 1 MIPLEKVQQIVSTYETLEKELASGDINKKDFANKSKGYSSIREVINQARSYLSFKKEQAE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L +I D SD +I +LA+ E++ + K+ E E + LLPKD D K+ ILEIRAGTG Sbjct: 61 LEKIIEDKKSDKDIIELAKNELIQLSKKREENEKILKVYLLPKDEADSKNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL++MYER +KW E+++ S ++ GG+KE++ I G ++S +KFESG Sbjct: 121 GLEATLFVADLYKMYERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSFLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA EIDV+I +D+RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRVPETETQGRVHTSAATVAVLPEAEEIDVNINEKDLRIDVFRSSGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V+ + KSQH+NR +AMK+LR+R+YD ER++ +RS +RK QIGSG Sbjct: 241 SAVRITHLPTGIVVSQQDEKSQHKNRAKAMKILRSRVYDAEREKKDKKRSKDRKNQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRINLT++KL+ L G ++ L Q + + Sbjct: 301 DRSERIRTYNFPQSRVTDHRINLTIHKLQEFLNGDAFEEFGRNLRIQDQEIKLANL 356 >gi|320528629|ref|ZP_08029782.1| peptide chain release factor 1 [Solobacterium moorei F0204] gi|320130995|gb|EFW23572.1| peptide chain release factor 1 [Solobacterium moorei F0204] Length = 358 Score = 252 bits (644), Expect = 5e-65, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 224/351 (63%), Gaps = 6/351 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +++ ++ EI ++ + + KL++E A ++ + + Sbjct: 7 KLSEIEKQYKEIVEKLMDEKVMSDPKLLTKLSKEQARLTQPVEAYHQLLELDSRIAQADE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + +D E++++A++E E E L I +LL+P+D DDD I+EIR G GG E Sbjct: 67 MLKE--NDPELKEMARMEKDECEPEREVLLERIQHLLVPRDPDDDHDVIMEIRGGAGGDE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 +F GDL+RMY +YA + WKV+VL +S ++ GGY +I+ ++ G V+ +KFESGVHR Sbjct: 125 GNIFAGDLYRMYSKYAESKGWKVQVLEASVSEAGGYTQIIFSVKGTDVYKELKFESGVHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GR+HTS ATV PEA + D++I +D+ I+T RASG+GGQH+N TDSAV Sbjct: 185 VQRVPKTETQGRIHTSTATVLCQPEAEDTDIEIDPKDLTIETHRASGAGGQHINKTDSAV 244 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RI H+PTGI V +SQ +NR AM+++RAR+Y+ ++ E R+ +IG+GDRS Sbjct: 245 RIVHVPTGITVNCQDGRSQIENRETAMRLIRARVYEELKRIQEEEAGKIRRAKIGTGDRS 304 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 E+IRTYN+ Q R+TDHRI+LT+ +L+ +++G +D +I LL + + + Sbjct: 305 EKIRTYNYPQNRVTDHRISLTITQLDRIMEGKLDGVIEGLLAEEEKRKLEE 355 >gi|186684480|ref|YP_001867676.1| peptide chain release factor 1 [Nostoc punctiforme PCC 73102] gi|238691196|sp|B2ITM5|RF1_NOSP7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|186466932|gb|ACC82733.1| peptide chain release factor 1 [Nostoc punctiforme PCC 73102] Length = 365 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 231/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ R+ + + D Y ++ + +++ +++ I+ +++ Sbjct: 8 DKLKSVEQTFNELTRRLGDPDTASNPDEYQEIAKSRSSLEEVVNTYEIWKTAQEDLIGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V + SD E++++A +EV +E++I LE+ + LLLP+D +D+K+ +LEIRAGTGG Sbjct: 68 EVYKESASDPELQEMASLEVKELEEKIEHLESRLKVLLLPRDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL +MY RYA + WKV ++S S + GG+KE++ I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLMQMYTRYAQTQGWKVSLVSESRGEMGGWKEVILEIKGNDVYSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRVHTS ATVA++PE ++++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATESGGRVHTSTATVAIMPEVDDVEIHIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LYD++ ++ R+ Q+G+G R Sbjct: 248 VDLMHKPTGIRIFCTEERSQLQNKERAMQILRAKLYDIKLGEQQAAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ Y L VL G ++ +I ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRATDHRLG-QNYSLTPVLDGDLETLIQSCISLDQQERLAELA 360 >gi|119961991|ref|YP_948327.1| peptide chain release factor 1 [Arthrobacter aurescens TC1] gi|119948850|gb|ABM07761.1| peptide chain release factor 1 [Arthrobacter aurescens TC1] Length = 359 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 149/366 (40%), Positives = 208/366 (56%), Gaps = 18/366 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + + L + A I+ ++S+ KL A + I+ + + + Sbjct: 1 MKMFESVQGLLDEHAAIQAQLSDPAVYADQSAARKLGRRSAQLQGIVEAYNKWRGLNDDL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + D E I L LL+P+D DD ++ ILE++ G Sbjct: 61 EAAKEMADE---DPEFAAEVVQLEEQIPAAQERL----RRLLIPRDPDDARNVILEVKGG 113 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVF 173 GG EAALF GDL RMY RYA R WK E++S++++D GGYK++ I +GVF Sbjct: 114 EGGDEAALFAGDLLRMYMRYAESRGWKTEMISATESDLGGYKDVAVAIKGNSNDPAQGVF 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGS 232 +R+KFE GVHRVQRVP TE+ GR+HTSAA V VLPE E + +I D++ID R+SG Sbjct: 174 ARLKFEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDEPEELEINQNDLKIDVYRSSGP 233 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQ VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRARL +++++ S Sbjct: 234 GGQSVNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARLLAHQQEQIDAANSE 293 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 RK QI + DRSERIRTYNF + RI DHR Y L+ V+ G ++ +I + A + Sbjct: 294 QRKSQIRTMDRSERIRTYNFPENRIADHRTGYKAYNLDAVMNGDLEPVIQSAIEADEQAR 353 Query: 352 IGSASE 357 + + E Sbjct: 354 LDAIGE 359 >gi|291298828|ref|YP_003510106.1| peptide chain release factor 1 [Stackebrandtia nassauensis DSM 44728] gi|290568048|gb|ADD41013.1| peptide chain release factor 1 [Stackebrandtia nassauensis DSM 44728] Length = 367 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 154/361 (42%), Positives = 222/361 (61%), Gaps = 18/361 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L +E+E ++++ ++ YA +SPI + + D K++ Sbjct: 9 RLAVLLAEHSELEKQLADPSIHADAALARRVGRRYAELSPIAACNAELDTVKEDLAAAEE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + GD E A+ + I +LE ++ LLLP+D DD + I+EI+AG GG+E Sbjct: 69 LAGDDPE-------FAAEATALRERIPQLEEKLAELLLPRDPDDSRDVIIEIKAGEGGAE 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVFSRMK 177 +ALF DL RMY RYA W E++ S +++ GG K++ + GV+SRMK Sbjct: 122 SALFAADLLRMYLRYAEKHGWVAEIMDSQESEMGGVKDVSVAVKTKGNPEGGHGVWSRMK 181 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE+ GR+HTSAA V V+PEA E+DV+I + ++RID R+SG GGQ V Sbjct: 182 FEGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEEVDVEINMHELRIDVYRSSGPGGQSV 241 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITHIPTG++ +EKSQ QN+ AM++LRARL +++ A RK Q Sbjct: 242 NTTDSAVRITHIPTGVVASCQNEKSQLQNKEAAMRILRARLLAAKQEEAEAAAGAARKSQ 301 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSER+RTYNF Q R+TDHRI T + L+ V+QG +D +++ L TA +A + + Sbjct: 302 VRTVDRSERVRTYNFPQNRVTDHRIGYTSHNLDQVMQGDMDGVLDALATAERAARLEGSD 361 Query: 357 E 357 E Sbjct: 362 E 362 >gi|46446286|ref|YP_007651.1| peptide chain release factor 1 [Candidatus Protochlamydia amoebophila UWE25] gi|61214629|sp|Q6MDH3|RF1_PARUW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|46399927|emb|CAF23376.1| probable translation releasing factor RF-1 [Candidatus Protochlamydia amoebophila UWE25] Length = 359 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 157/359 (43%), Positives = 241/359 (67%), Gaps = 6/359 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + K++ +L R AE+E + Y LT+E+A ++ + +++ + Sbjct: 1 MMEKKVHELLERLAEVEEVLGNPHVYDDQKKYRALTQEHAYLNNLKKSWDEKKDLEKQLE 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ D E ++ + ++ ++ ++EL+ I LL+P D D++ I+E+RAGT Sbjct: 61 DNQELLKIEK-DLEFAEVLKDDIRQLQSRVQELQLLIENLLVPPDPLDNRPSIIELRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALFVGD RMY+ +A + W+ E+LS + ++ GG+KE V +SG V+ M++E+ Sbjct: 120 GGDEAALFVGDCVRMYKLFADRKGWRYELLSCTPSEMGGFKEYVMVLSGENVYRFMQYEA 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 G HRVQRVPATEA GRVHTSA T+AVLPE E + D+ +D+RIDT R+SG+GGQHVNT Sbjct: 180 GTHRVQRVPATEAQGRVHTSAITIAVLPEPDENEEIDLDEKDLRIDTYRSSGAGGQHVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+P+GI+V E+SQH+N+ +AM++L+A++ ++E+++ E ++ R Q+G Sbjct: 240 TDSAVRITHVPSGIVVYCQEERSQHKNKDKAMRLLKAKMAEIEQQKKQQELASTRAQQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRSERIRTYNF Q RITDHRINLT Y L+YV+ G +++I + L+ + + ++ E Sbjct: 300 SGDRSERIRTYNFPQNRITDHRINLTKYNLDYVINGDLEEITSALVAYFHQEKLKTSRE 358 >gi|302759937|ref|XP_002963391.1| hypothetical protein SELMODRAFT_141857 [Selaginella moellendorffii] gi|300168659|gb|EFJ35262.1| hypothetical protein SELMODRAFT_141857 [Selaginella moellendorffii] Length = 412 Score = 252 bits (643), Expect = 7e-65, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 221/353 (62%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +++++ + + KL + A + +++ Y + ++E DL Sbjct: 58 KLDSAEQTYKELTVKLADPDVANDPSEFQKLAKAIADMEEVVTSYQKYKESQRELDDLQE 117 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + D E+ ++A E +++ I LE + LLLP D D ++ +LE+RAGTGG E Sbjct: 118 MIK-SSGDKELAEMAVEESAILKENITNLEEYLKVLLLPSDPLDSRNIMLEVRAGTGGDE 176 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++YA +W +S ++ + GG+KE V I+G V+S++K+ESGVHR Sbjct: 177 AGIWAGDLVRMYQKYAEQNRWNWSPISQTEAEKGGFKEYVLEITGDRVYSKLKYESGVHR 236 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 237 VQRVPATESQGRVHTSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAV 296 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E++Q +N+ RA ++LRA+LY+++ + S+ R+ Q+G+G RS Sbjct: 297 DLFHKPTGIRIFCTEERTQLKNKARAFQLLRAKLYEMKLAEQQEKISSQRRSQVGTGARS 356 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R++DHR + + L+ L G I+ + Q +M+ + Sbjct: 357 EKIRTYNYKDNRVSDHRTKIN-FDLDSFLSGNIESAVQACAAVEQKQMLEELA 408 >gi|295707229|ref|YP_003600304.1| peptide chain release factor 1 [Bacillus megaterium DSM 319] gi|294804888|gb|ADF41954.1| peptide chain release factor 1 [Bacillus megaterium DSM 319] Length = 325 Score = 252 bits (642), Expect = 7e-65, Method: Composition-based stats. Identities = 157/325 (48%), Positives = 226/325 (69%), Gaps = 2/325 (0%) Query: 33 IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRE 92 + ++E + I ++ Y K++ + T++ D D+++RD+ + E+ +E + E Sbjct: 2 REYSKEQSDIQQTVAAYQEYKDVKEQLSEAKTMLEDK-LDADMRDMVKEEIAELETQQEE 60 Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSS 152 L ++ LL+PKD +DDK+ I+E+R GG EAALF +L+RMY R+A + WK EV+ + Sbjct: 61 LVEKLRILLIPKDPNDDKNVIMEVRGAAGGDEAALFAANLYRMYSRFAESQGWKTEVMEA 120 Query: 153 SDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE 212 + GGYKEI+ I+G+G +S+MKFE+G HRVQRVP TE+ GR+HTS ATVA LPEA E Sbjct: 121 TTTGVGGYKEIIFMINGKGAYSKMKFENGAHRVQRVPETESGGRIHTSTATVACLPEAEE 180 Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 ++VDI +DIR+DT +SG GGQ VNTT SAVR+TH+PT +V EKSQ +N+ +AMK Sbjct: 181 VEVDIHEKDIRVDTFASSGPGGQSVNTTMSAVRLTHLPTNTVVSCQDEKSQIKNKEKAMK 240 Query: 272 VLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYV 331 VLRAR+YD ++ E A RK +GSGDRSERIRTYNF Q R+TDHRI LT+ KL+ + Sbjct: 241 VLRARVYDKFQREAQAEYDATRKQAVGSGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQI 300 Query: 332 LQGYIDDIINPLLTAHQAKMIGSAS 356 L+G +D+II+ L+ QA+ + ++ Sbjct: 301 LEGKLDEIIDALVMEDQARRMEDSN 325 >gi|302785810|ref|XP_002974676.1| hypothetical protein SELMODRAFT_174481 [Selaginella moellendorffii] gi|300157571|gb|EFJ24196.1| hypothetical protein SELMODRAFT_174481 [Selaginella moellendorffii] Length = 412 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 131/353 (37%), Positives = 221/353 (62%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +++++ + + KL + A + +++ Y + ++E DL Sbjct: 58 KLDSAEQTYKELTVKLADPDVANDPSEFQKLAKAIADMEEVVTSYQKYKESQRELDDLQE 117 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + D E+ ++A E +++ I LE + LLLP D D ++ +LE+RAGTGG E Sbjct: 118 MIK-SSGDKELAEMAVEESAILKENITNLEEYLKVLLLPSDPLDSRNIMLEVRAGTGGDE 176 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++YA +W +S ++ + GG+KE V I+G V+S++K+ESGVHR Sbjct: 177 AGIWAGDLVRMYQKYAEQNRWNWSPISQTEAEKGGFKEYVLEITGDRVYSKLKYESGVHR 236 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 237 VQRVPATESQGRVHTSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAV 296 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E++Q +N+ RA ++LRA+LY+++ + S+ R+ Q+G+G RS Sbjct: 297 DLFHKPTGIRIFCTEERTQLKNKARAFQLLRAKLYEMKLAEQQEKISSQRRSQVGTGARS 356 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R++DHR + + L+ L G I+ + Q +M+ + Sbjct: 357 EKIRTYNYKDNRVSDHRTKIN-FDLDSFLSGNIESAVQACAAMEQKQMLEELA 408 >gi|170077656|ref|YP_001734294.1| peptide chain release factor 1 [Synechococcus sp. PCC 7002] gi|238689045|sp|B1XJH8|RF1_SYNP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169885325|gb|ACA99038.1| peptide chain release factor 1 [Synechococcus sp. PCC 7002] Length = 363 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 143/354 (40%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ R+++ + D ++ + +++ ++ + + + ++E + Sbjct: 8 DKLKSVEQTFQEMTRRLADPDIATNPDELQRVAKIRSSLEETVNTFNQWKEAQEELRGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E++++A +EV +E I LEN + LLLPKD +D+K+ +LEIRAGTGG Sbjct: 68 EILKESAGDPEMKEMAALEVEELENTIDTLENRLKILLLPKDPNDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W+V++LS S D GG+K ++ I G V+S++K+E+GVH Sbjct: 128 EASIWAGDLLRMYSRYAEGQNWRVKLLSESAADMGGFKAVILEIQGEQVYSKLKYEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS AT+AV+PE +++V+I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATIAVMPEVDDVEVEIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY++E +R E S+ RK Q+G+G R Sbjct: 248 VDLFHKPTGIRVFCTEERSQLQNRERAMQILRAKLYEMELQRQQEEVSSMRKSQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ L L+G I+D++ ++ Q + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFS-LAPALEGDIEDMLQACISQDQQAQLEQLA 360 >gi|293399752|ref|ZP_06643898.1| peptide chain release factor 1 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306152|gb|EFE47395.1| peptide chain release factor 1 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 358 Score = 252 bits (642), Expect = 8e-65, Method: Composition-based stats. Identities = 140/360 (38%), Positives = 223/360 (61%), Gaps = 6/360 (1%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + NR+ EI M + V KL E A ++ ++ Y + Sbjct: 1 MSIMIERLEGMVNRYHEITELMMQPDIVSDSRELAKLGREQADLTQVVETYQDYKHSMEA 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + D EI+++A++E+ +E +I E ++ LL+PKD +D + I+EIR Sbjct: 61 LE--EAKELLKEEDKEIKEMAKMEIEELEPKIEEYLGKLEILLIPKDPNDSHNAIVEIRG 118 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GG E +F GDL+RMY +YA + WK+E++ D++ GG+ + + G GV+ ++KF Sbjct: 119 AAGGDEGNIFAGDLYRMYSKYAESQGWKIEIVEMDDSEAGGFSLVSFMVKGDGVYGKLKF 178 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 ESG HRVQRVP TE+ GR+HTS ATV V PE D DI + D+ I+TMR+SG+GGQH+N Sbjct: 179 ESGSHRVQRVPKTESQGRIHTSTATVLVTPEIEAEDFDIDMNDLEIETMRSSGAGGQHIN 238 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRI H PTGI V +SQH+NR A+ +R+R+Y+ ++++ E+ R+ +I Sbjct: 239 KTDSAVRIVHKPTGITVKCQDGRSQHENRATALMTIRSRVYEEHQRKLEEEQGMERRSKI 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 G+GDR+E+IRTYN+ Q R+TDHRI T+ +L+ +++G + D+++ L +A Q + +E Sbjct: 299 GTGDRAEKIRTYNYPQNRVTDHRIGYTVNQLDRIMEGKMQDLLDALTSADQQAKLAGNNE 358 >gi|239617233|ref|YP_002940555.1| peptide chain release factor 1 [Kosmotoga olearia TBF 19.5.1] gi|239506064|gb|ACR79551.1| peptide chain release factor 1 [Kosmotoga olearia TBF 19.5.1] Length = 361 Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 174/359 (48%), Positives = 237/359 (66%), Gaps = 7/359 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 K I K + E+E ++S+S V K L++ +A + I + KKQE Sbjct: 1 MNLEKLIELFKKQLEEVEAKLSDSSIVGNPSKLMELSKRHAELKEISRSYDLLASKKQEL 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 Q+ + + E R+ A+ + ++KEI ++E + +LL+P + K I+EIRAG Sbjct: 61 QEWEEIKELLS--PEEREEAEKNIAELQKEIEQIELNLKFLLIPDEL-GGKDIIVEIRAG 117 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF GDLFRMY RYA WKVE L S++ D GG+KE+ I G+ VF ++K+E Sbjct: 118 TGGEEAALFAGDLFRMYTRYAERNSWKVETLESNETDLGGFKEVTFQIKGKDVFRKLKYE 177 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+ GR+HTS ATVAVLP+A+E+DV I ++RIDT R+SG+GGQHVN Sbjct: 178 SGVHRVQRVPQTESGGRIHTSTATVAVLPKASEVDVAIDPSELRIDTFRSSGAGGQHVNR 237 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRI H+PTGI VT SE+SQHQN+ RAM++LRARLY + R + + S R+ QIG Sbjct: 238 TESAVRIVHLPTGITVTVQSERSQHQNKARAMEILRARLYSLYRSQQESTLSQQRRSQIG 297 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +G+RSE+IRTYNF Q R+TDHRIN T Y+L+ +L G +D++I L A + E Sbjct: 298 TGERSEKIRTYNFPQNRVTDHRINYTTYRLQDILDGDLDELIAKLAEADINIKLEKLLE 356 >gi|242089427|ref|XP_002440546.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor] gi|241945831|gb|EES18976.1| hypothetical protein SORBIDRAFT_09g002890 [Sorghum bicolor] Length = 416 Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 167/356 (46%), Positives = 242/356 (67%), Gaps = 3/356 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ ++ R A ++ ++++ S + Y + +E+ + + I K++E + L Sbjct: 60 IMEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKELRSKREEIEGL 119 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +++ + + ++R++A E+L + + L++E+ LLPKD D++ CILE+RAGTGG Sbjct: 120 KSLVTNAREEKDMREMAAEELLEAVEVEKRLQHELFRSLLPKDEADERDCILEVRAGTGG 179 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF D+FRMYE+YA WK +V+ ++ GYKE TISG G F ++KFESG+ Sbjct: 180 EEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGI 239 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE SGRVHTSA +VAVLP+A E+DV + ED+RIDT R+ GSGGQ VNTTDS Sbjct: 240 HRVQRVPVTEKSGRVHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDS 299 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTG +V E+SQH N+ +A+KVLRARLY++ER R+ +RS R QIGSGD Sbjct: 300 AVRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERHRLHMDRSKLRSEQIGSGD 359 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHR+ +T + + V++G +D ++ LL + I S Sbjct: 360 RSERIRTYNFPQGRVTDHRVGITHHSIADVMEGESLDVFVDALLLQEEMDAIASFG 415 >gi|218440653|ref|YP_002378982.1| peptide chain release factor 1 [Cyanothece sp. PCC 7424] gi|226739098|sp|B7KI17|RF1_CYAP7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|218173381|gb|ACK72114.1| peptide chain release factor 1 [Cyanothece sp. PCC 7424] Length = 370 Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 232/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + D ++ + +++ ++ + + K+E Sbjct: 8 EKLKSVEQTYKELTRRLADPDIATNPDELQRVAKARSSLEETVNTYETWQKTKEEITGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + DSE+R++A +EV +E+++ +LEN++ LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKEAGGDSEMREMAALEVEELEEQLEQLENKLKVLLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W V+++S S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQNWVVKLVSESLADMGGFKEAILEIKGDQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDEVEVQIDPKDIEVSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLREQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ + L+G I+ II + Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFSLVGA-LEGDIEVIIQSCIGKDQQERLAELA 360 >gi|257785108|ref|YP_003180325.1| peptide chain release factor 1 [Atopobium parvulum DSM 20469] gi|257473615|gb|ACV51734.1| peptide chain release factor 1 [Atopobium parvulum DSM 20469] Length = 355 Score = 252 bits (642), Expect = 9e-65, Method: Composition-based stats. Identities = 160/357 (44%), Positives = 232/357 (64%), Gaps = 9/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + + +AE+E ++++ V Y ++ +E++ + +++ + Y + + Sbjct: 1 MRDKLEKIVDAYAELEQKLADPAVVSDPKEYARVAKEHSNQADLVAHANKYITALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ SD E +++ Q ++ A E+ + +LE+EI +L+P D +D+K I+EIRAG G Sbjct: 61 AKELLN-ATSDPEEKEMLQEDIAANEEMLPQLEDEIKVMLIPGDPNDEKDTIVEIRAGVG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MYER+A R WK E+LSSS ++ GG+K I ++G V+S MK+ESG Sbjct: 120 GDEAAIFAGDLFKMYERFAEARGWKTEILSSSPSEAGGFKTIEFKVTGDKVYSVMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EID+ I ED+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRVPKTESQGRIQTSTATVAVLPEADEIDIQINQEDLRIDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E +R E+ A R QIG G Sbjct: 240 SAVRITHLPTNTVVQSQDQRSQIQNREVCMQMLRARLYEMELERQQAEQGAERLSQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 RSE+IRTYN Q R+TDHR+ Y VL G + +I L A +A+ + A Sbjct: 300 ARSEKIRTYNQPQDRVTDHRVGFNGTYN--GVLLGDTLPSVIEALAAAERAEKLAQA 354 >gi|239944287|ref|ZP_04696224.1| peptide chain release factor 1 [Streptomyces roseosporus NRRL 15998] gi|239990742|ref|ZP_04711406.1| peptide chain release factor 1 [Streptomyces roseosporus NRRL 11379] gi|291447755|ref|ZP_06587145.1| peptide chain release factor 1 [Streptomyces roseosporus NRRL 15998] gi|291350702|gb|EFE77606.1| peptide chain release factor 1 [Streptomyces roseosporus NRRL 15998] Length = 358 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 220/363 (60%), Gaps = 21/363 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L ++E ++++ KL + YA ++PI+S + Q + + Sbjct: 3 EAVEELIGEHTDLEKKLADPSVHADQANARKLNKRYAELTPIVSTYRAWKQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +EK+ E+ ++ LL+P+D DDK +LEI+AG GG Sbjct: 63 EFAADDPD-------FAAEVKELEKQREEITEKLRLLLVPRDPSDDKDVLLEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDV 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + A A + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGELDAVIQACVDADSAAKL 355 Query: 353 GSA 355 +A Sbjct: 356 ANA 358 >gi|115352205|ref|YP_774044.1| peptide chain release factor 2 [Burkholderia ambifaria AMMD] gi|115282193|gb|ABI87710.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia ambifaria AMMD] Length = 406 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 69 DAKSARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTALDSDLRDALDLFELA 128 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + K++ +I + + + D +C ++I+AG GG+EA Sbjct: 129 REEGD-----EDTLVASEDDAKKLEARVGDIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 183 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K ++G + ++ E+G+HR+ Sbjct: 184 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATVKVTGEYAYGFLRTETGIHRLV 243 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V++ D+RIDT RASG+GGQH+N TDSAVR Sbjct: 244 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPADLRIDTYRASGAGGQHINKTDSAVR 303 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+ E ++ E+ + K +G G Sbjct: 304 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEMRKRQAEQDKLESSKTDVGWG-- 361 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + VL G +DD I+ L Sbjct: 362 -HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFISASLKQ 404 >gi|189025285|ref|YP_001933057.1| peptide chain release factor 1 [Treponema pallidum subsp. pallidum SS14] gi|238689313|sp|B2S1Z9|RF1_TREPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189017860|gb|ACD70478.1| peptide chain release factor 1 [Treponema pallidum subsp. pallidum SS14] gi|291059466|gb|ADD72201.1| peptide chain release factor 1 [Treponema pallidum subsp. pallidum str. Chicago] Length = 351 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 168/349 (48%), Positives = 243/349 (69%), Gaps = 5/349 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +L+ ++ +++ + + Y + ++A +S ++ + Y +++ +D Sbjct: 1 MIEKLEELRAQWRKLQQEVENPSLFSSTQSYRERMRDHAYLSRLMEEYDRYLLTEKQLED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H +I D SD++ +D+ + E+ +E + + + LL+P D +K+ I+EIR GTG Sbjct: 61 AHVLIQDE-SDADFKDVIRQEIRTLEAALHTSQKRLKTLLIPPDPLQEKNIIMEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA ++W+ EVL+ S+ + GG+KEI +ISGR V+ +++ESG Sbjct: 120 GDEAALFAADLFRMYTHYAESKQWRYEVLAVSETELGGFKEITFSISGRDVYGSLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TEASGR+HTSA TVAVLPE E +VDI ED+R+D MRASG GGQ VNTTD Sbjct: 180 VHRVQRVPSTEASGRIHTSAVTVAVLPEMEETEVDIRAEDVRVDVMRASGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI +V EKSQ +N+ +AM+VLR+R+YD+E + R+ RK Q+GSG Sbjct: 240 SAVRLTHLPTGIVVVCQDEKSQIKNKAKAMRVLRSRVYDLEESKRQVARARERKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 DRSERIRTYNF Q R+TDHR+ +TLYKL+ V+QG +DDII PL A + Sbjct: 300 DRSERIRTYNFPQNRVTDHRVRVTLYKLDAVMQGALDDIIEPLCIASRE 348 >gi|308805082|ref|XP_003079853.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri] gi|116058310|emb|CAL53499.1| COG0216: Protein chain release factor A (ISS) [Ostreococcus tauri] Length = 1134 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 161/347 (46%), Positives = 233/347 (67%), Gaps = 5/347 (1%) Query: 14 NRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 R E+ +S + +D I+ +E A + P++ + S+ + E + L + + + Sbjct: 553 KRHDELIALISAPDAAIDRVIEANKELARLDPLVKQYSMVKSLRDERESLDELAR-TSDE 611 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 +I +LA+ E+ AI+ ++ E E+ + +LLP+D DD+ ILE+RAG GG EAALF +L Sbjct: 612 KDITELAREELRAIDAKLPEQEHALRIMLLPRDDADDRGAILEVRAGAGGDEAALFAAEL 671 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 FRMY +A W+ E L+ S+ D G +E A + G GVF R+KFESGVHRVQRVP TE Sbjct: 672 FRMYALHARKSGWRFETLNMSETDGKGIREGSAEVLGDGVFGRLKFESGVHRVQRVPETE 731 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 GRVHTS A+VAVLP AAE+D+DI ED+RI+TMRASG+GGQHVNTT+SAVR+TH+PTG Sbjct: 732 TQGRVHTSTASVAVLPHAAEVDMDIRDEDVRIETMRASGAGGQHVNTTNSAVRLTHLPTG 791 Query: 253 IMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I V E+SQH+N+ +A VL++RLYD+ER+++ANER+ R IG+GDRSE++RTYNF Sbjct: 792 ITVAIQDERSQHKNKAKAFSVLKSRLYDMEREKLANERAELRSSLIGTGDRSEKVRTYNF 851 Query: 312 SQGRITDHRI-NLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 QGR+ DHR+ ++ + G+ +DD+++ L + + S Sbjct: 852 PQGRVKDHRVDGNVSGDIKGFMDGFLLDDLVDKLREKEIEEKLDRLS 898 >gi|302529800|ref|ZP_07282142.1| peptide chain release factor 1 [Streptomyces sp. AA4] gi|302438695|gb|EFL10511.1| peptide chain release factor 1 [Streptomyces sp. AA4] Length = 356 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 221/362 (61%), Gaps = 16/362 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + L + A +E +++ KL YA +SP++ + DQ + + Sbjct: 1 MDSSSLKGLLDEHARLEQELADPAVHADQARARKLGRRYAELSPVVRAVRELDQARDDLS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + + D +I +LE ++ LLLP+D D ++EI++G Sbjct: 61 AAKELSAEDATFAAEADEL-------TAKIPQLEAKLTELLLPRDPYDGSDVVMEIKSGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSR 175 GG E+ALF GDL RMY RYA WK EVL S+++D GGYK++ ++ + V++R Sbjct: 114 GGEESALFAGDLLRMYLRYAERHNWKAEVLDSTESDLGGYKDVTLSLKSKTADVEGVWAR 173 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 +KFE GVHRVQRVPATE+ GR+HTSA+ V + PE E++V+I D+RID R+SG GGQ Sbjct: 174 LKFEGGVHRVQRVPATESQGRIHTSASGVLIYPEPEEVEVEIDPNDLRIDVFRSSGPGGQ 233 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +EKSQ QNR RA++VL+ARL + + A + S R+ Sbjct: 234 SVNTTDSAVRITHLPTGIVVSCQNEKSQIQNRARALQVLQARLQAIAEEEAAAKASDARR 293 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+ + DRSER+RTYNF + RI+DHR+N Y L+ VL G +D +++ L A + + + + Sbjct: 294 SQVRTVDRSERVRTYNFPENRISDHRVNYKAYNLDQVLDGELDGVLDALAAADREERLAA 353 Query: 355 AS 356 S Sbjct: 354 QS 355 >gi|302842492|ref|XP_002952789.1| hypothetical protein VOLCADRAFT_105686 [Volvox carteri f. nagariensis] gi|300261829|gb|EFJ46039.1| hypothetical protein VOLCADRAFT_105686 [Volvox carteri f. nagariensis] Length = 415 Score = 251 bits (641), Expect = 1e-64, Method: Composition-based stats. Identities = 139/358 (38%), Positives = 231/358 (64%), Gaps = 6/358 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ + F E++++M++ + K+ + A + ++ Y +++ D Sbjct: 54 MVEKLSAAEMTFKELQMKMADPEVAANSTEFQKVAKAAADLEETVNAYRTYKDTEKQLSD 113 Query: 62 LHT-VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D E+ + A+ E+ +E + +L++++ L+PKD DD++ +LEIRAG Sbjct: 114 ASEYLKNEAADDPEMAEFARAEIAELEVSLAQLQDKLRLQLVPKDPLDDRNIMLEIRAGA 173 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+++ GD+ RMY+RYA + WK ++S + + GGYKE++ ISG V+S++K+E+ Sbjct: 174 GGDEASIWAGDMMRMYQRYANRQGWKASLVSCTQGESGGYKEVILEISGTSVYSKLKWEA 233 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEA+GRVHTS ATVAV+PE ++DV I +I + RASG+GGQ+VN Sbjct: 234 GVHRVQRVPATEAAGRVHTSTATVAVMPEVEDVDVQINPSEIEVKFARASGAGGQNVNKV 293 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H PTGI + E++Q QN+ RA ++LRA+LY++E +R E A RK Q+G+ Sbjct: 294 ETAVDLMHKPTGIRVFCQEERTQAQNKERAFQILRAKLYEMEIQRQQAEIYAARKSQVGT 353 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSE+I+TYN+ R++DHRI + L VL+G ++D + +++A Q + + +E Sbjct: 354 GDRSEKIKTYNYKDSRVSDHRIK-QNFDLNSVLEGDLEDSLQAMISADQQEKLKMLAE 410 >gi|254412235|ref|ZP_05026010.1| peptide chain release factor 1 [Microcoleus chthonoplastes PCC 7420] gi|196181201|gb|EDX76190.1| peptide chain release factor 1 [Microcoleus chthonoplastes PCC 7420] Length = 371 Score = 251 bits (640), Expect = 1e-64, Method: Composition-based stats. Identities = 137/354 (38%), Positives = 231/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ F E+ R+++ ++ + +++ ++ ++ ++E Sbjct: 8 DKLQSVEQTFHELTRRLADPDIATDPVEVQRVAKARSSLEEVVITYELWKTAQEELTGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + N D E+ ++A +EV ++ ++ ELE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKEANGDGEMHEMASLEVEELQTKLEELEKRLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA + W+V++LS S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAETQNWRVKLLSESPADMGGFKEAILEIQGEQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVAV+PE ++++++ +D+ + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAVMPEVDDVEIEVDPKDLEVSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RA+++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNRERALQILRAKLYEMKLREQQEAVTSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR++ Y L +L+G I+ +I +T Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLS-QNYSLNSLLEGDIESVIQACITQDQQERLEELA 360 >gi|15618037|ref|NP_224321.1| peptide chain release factor 1 [Chlamydophila pneumoniae CWL029] gi|15835649|ref|NP_300173.1| peptide chain release factor 1 [Chlamydophila pneumoniae J138] gi|16752931|ref|NP_445202.1| peptide chain release factor 1 [Chlamydophila pneumoniae AR39] gi|33241449|ref|NP_876390.1| peptide chain release factor 1 [Chlamydophila pneumoniae TW-183] gi|6225941|sp|Q9Z968|RF1_CHLPN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|4376376|gb|AAD18266.1| Peptide Chain Releasing Factor [Chlamydophila pneumoniae CWL029] gi|7189573|gb|AAF38472.1| peptide chain release factor 1 [Chlamydophila pneumoniae AR39] gi|8978487|dbj|BAA98324.1| peptide chain releasing factor [Chlamydophila pneumoniae J138] gi|33235957|gb|AAP98047.1| translation releasing factor RF-1 [Chlamydophila pneumoniae TW-183] gi|269302994|gb|ACZ33094.1| peptide chain release factor 1 [Chlamydophila pneumoniae LPCoLN] Length = 357 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 164/355 (46%), Positives = 234/355 (65%), Gaps = 7/355 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K++ + NR AE+E+++S Y L++E++ + + + ++ D Sbjct: 1 MKKKVAEYLNRLAEVEIKISNPEIFSNSKEYSALSKEHSYLLELKNAYDKILNLEKVLAD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D E+ + + + + E+ +L + LL+P D DDD + I+E+RAGTG Sbjct: 61 DKQALAIEK-DPEMVVMLEEGINENKVELEKLNKILESLLVPPDPDDDLNVIMELRAGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALFVGD RMY YA+ + WK EVLS+S++D GYKE V ISG GV +++E+G Sbjct: 120 GEEAALFVGDCVRMYHLYASSKGWKYEVLSASESDLKGYKEYVMGISGTGVKRLLQYEAG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 HRVQRVP TE GRVHTSA T+AVLPE +E D + I +D++IDT RASG+GGQHVN Sbjct: 180 THRVQRVPETETQGRVHTSAITIAVLPEPSEEDTELLINEKDLKIDTFRASGAGGQHVNV 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQH+N+ +AM++L+AR+ D E ++ NE SA R Q+G Sbjct: 240 TDSAVRITHLPTGVVVTCQDERSQHKNKDKAMRILKARIRDAEMQKRHNEASAMRSAQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 SGDRSERIRTYNFSQ R+TDHRI LTLY L+ V++G +D I +++ +++ Sbjct: 300 SGDRSERIRTYNFSQNRVTDHRIGLTLYNLDKVMEGDLDPITTAMVSHAYHQLLE 354 >gi|320102129|ref|YP_004177720.1| peptide chain release factor 1 (bRF-1) [Isosphaera pallida ATCC 43644] gi|319749411|gb|ADV61171.1| bacterial peptide chain release factor 1 (bRF-1) [Isosphaera pallida ATCC 43644] Length = 364 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 136/350 (38%), Positives = 207/350 (59%), Gaps = 4/350 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I R+ E+ ++ V+ L E +A++ + + Y + + ++ Sbjct: 3 EKIKADYRRYEELNRELASPDLVNDPGRLAALMRERSALAKLAVPYARYLELTRRRAEVQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 VI + + E E + D I+EIRAGTGG Sbjct: 63 QVIETESDPEMKEYAQAEFDQLAQAEAESAEYLKTLIYEQATGSDHAGVIVEIRAGTGGD 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL+ MY R+ + W+ E L + + GG++E + G G + ++FESG H Sbjct: 123 EAALFARDLYEMYRRFVERQGWRFEPLEIAPTELGGFREASFGVRGEGAYRHLQFESGGH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GR+HTSAATVAVLPE E+++++ ED++ID MRA G GGQH N T+S Sbjct: 183 RVQRVPVTETQGRIHTSAATVAVLPEPEEVEIELRDEDLQIDVMRAGGPGGQHQNKTESG 242 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+P+GI+V E+SQH+N+ +A+++LR+RLY+ +R ++RS R+ IGSGDR Sbjct: 243 VRITHLPSGIVVNCRDERSQHKNKAKALRILRSRLYEAQRNAAQSQRSQTRRSLIGSGDR 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 S+RIRTYNF Q R+TDHRINLTL++L+ ++ G ++ + PL+ + + + Sbjct: 303 SQRIRTYNFPQNRVTDHRINLTLHQLDRIVAGELELVTRPLIEHDRREQL 352 >gi|88807914|ref|ZP_01123425.1| peptide chain release factor 1 [Synechococcus sp. WH 7805] gi|88787953|gb|EAR19109.1| peptide chain release factor 1 [Synechococcus sp. WH 7805] Length = 365 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 224/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ F +E ++++ +L E + + P+++ + + E + Sbjct: 9 RLEAARDSFHNLERQLADPDVASDPTRLQSIARERSRLEPLVNDYTSLQSVQAEREQARE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D E+ +LAQ+E+ ++K L + LLPKD D++S +LEIRAG GG E Sbjct: 69 LLRDSRGDEEMANLAQLELEELDKRHEVLIQRLTLALLPKDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYER+++ R W V+ +S+S+ D GG+KE++ ++ G VFS +KFE+GVHR Sbjct: 129 ACLWAGDLARMYERFSSRRGWTVQPVSASEADLGGFKELILSVKGDSVFSELKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVQIEPADLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E+SQ QNR RAM++LRA+LY+ + S+ R+ Q+G+GDRS Sbjct: 249 DLMHRPSGIRVFCTQERSQLQNRERAMEILRAKLYERQLAEANARESSARRAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN R+TDHR+ L+ VLQG ++D+I + Q + + S+ Sbjct: 309 EKIRTYNAKDNRVTDHRLGRNFS-LDPVLQGQMEDVIGACIAEEQRSKLAALSQ 361 >gi|111018484|ref|YP_701456.1| peptide chain release factor 1 [Rhodococcus jostii RHA1] gi|119361595|sp|Q0SGN8|RF1_RHOSR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110818014|gb|ABG93298.1| peptide chain release factor RF1 [Rhodococcus jostii RHA1] Length = 359 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 212/356 (59%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E ++++ A K + +A ++PI++ + + + + Sbjct: 10 IDDILAEHAGLEQQLADPALHNDPSAARKAGKRFAELAPIMATYAKLKSAQDDLDAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D +S EV +E ++ EL+ + LL P+D D +LE+++G GG E+ Sbjct: 70 AADDSS-------FAAEVPELEAQVLELDKALTDLLAPRDPHDGDDVVLEVKSGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF DL RMY RYA W+VE+L ++ +D GGYK+ +I GV++R+KFE Sbjct: 123 ALFASDLARMYVRYAERHGWRVEILDATVSDLGGYKDATLSIKSKGDVRDGVWARLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V + PE E++ I D+RID R+SG GGQ VNT Sbjct: 183 GVHRVQRVPVTESQGRVHTSAAGVLIYPEPEEVEEVQIDETDLRIDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + E SA R+ Q+ Sbjct: 243 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQAAAEEAADAEASAGRQSQVR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RITDHRI + L+ VL G +D +++ L + + + + Sbjct: 303 TVDRSERIRTYNFPENRITDHRIGFKSHNLDAVLDGELDALLDALGKSDREARLAA 358 >gi|15639045|ref|NP_218491.1| peptide chain release factor 1 [Treponema pallidum subsp. pallidum str. Nichols] gi|6093956|sp|O83090|RF1_TREPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|3322309|gb|AAC65047.1| peptide chain release factor 1 (prfA) [Treponema pallidum subsp. pallidum str. Nichols] Length = 351 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 168/349 (48%), Positives = 244/349 (69%), Gaps = 5/349 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +++ +L+ ++ +++ + + Y + ++A +S ++ + Y +++ +D Sbjct: 1 MIEKLEELRAQWRKLQQEVENPSLFSSTQSYRERMRDHAYLSRLMEEYDRYLLTEKQLED 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H +I D SD++ +D+ + E+ +E + + + LL+P D+ +K+ I+EIR GTG Sbjct: 61 AHVLIQDE-SDADFKDVIRQEIRTLEAALHTSQKRLKTLLIPPDSLQEKNIIMEIRGGTG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DLFRMY YA ++W+ EVL+ S+ + GG+KEI +ISGR V+ +++ESG Sbjct: 120 GDEAALFAADLFRMYTHYAESKQWRYEVLAVSETELGGFKEITFSISGRDVYGSLRYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP+TEASGR+HTSA TVAVLPE E +VDI ED+R+D MRASG GGQ VNTTD Sbjct: 180 VHRVQRVPSTEASGRIHTSAVTVAVLPEMEETEVDIRAEDVRVDVMRASGPGGQCVNTTD 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V EKSQ +N+ +AM+VLR+R+YD+E + R+ RK Q+GSG Sbjct: 240 SAVRLTHLPTGIVVVCQDEKSQIKNKAKAMRVLRSRVYDLEESKRQVARARERKSQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 DRSERIRTYNF Q R+TDHR+ +TLYKL+ V+QG +DDII PL A + Sbjct: 300 DRSERIRTYNFPQNRVTDHRVRVTLYKLDAVMQGALDDIIEPLCIASRE 348 >gi|167041273|gb|ABZ06029.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine microorganism HF4000_005D21] gi|167045778|gb|ABZ10424.1| putative peptidyl-tRNA hydrolase domain protein [uncultured marine bacterium HF4000_APKG3108] Length = 358 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 169/356 (47%), Positives = 241/356 (67%), Gaps = 3/356 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ + + + +E ++ + + ++ Y++I +I++ Y ++E+ + Sbjct: 1 MIPLEKVKQIVSTYETLEKELASGDINKKDFANKSKGYSSIREVINQARSYLGFEKEKVE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L +I D SD ++ +LA+ E++ + K+ E E + LLP D D K+ ILEIRAGTG Sbjct: 61 LEKIIEDKKSDKDMIELAKNELIQLSKKKEENEKILKVYLLPNDEADSKNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL++MYER +KW E+++ S ++ GG+KE++ I G ++S +KFESG Sbjct: 121 GLEATLFVADLYKMYERVCLNKKWSFEIINLSKSEAGGFKEVILLIKGTNIYSFLKFESG 180 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTSAATVAVLPEA E+DV I +D+RID R+SG GGQ VNTTD Sbjct: 181 VHRVQRVPETETQGRVHTSAATVAVLPEAEEVDVKINEKDLRIDVFRSSGPGGQSVNTTD 240 Query: 242 SAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI V+ + KSQH+NR +AMK+LR+R+YD ER++ +RS +RK QIGSG Sbjct: 241 SAVRITHLPTGIAVSQQDEKSQHKNRAKAMKILRSRVYDAEREKKDKKRSKDRKNQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF Q R+TDHRINLT++KL+ L G ++ L Q + + Sbjct: 301 DRSERIRTYNFPQSRVTDHRINLTIHKLQEFLNGDAFEEFGQNLRIQDQEIKLANL 356 >gi|297559304|ref|YP_003678278.1| peptide chain release factor 1 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843752|gb|ADH65772.1| peptide chain release factor 1 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 356 Score = 250 bits (638), Expect = 2e-64, Method: Composition-based stats. Identities = 149/359 (41%), Positives = 220/359 (61%), Gaps = 18/359 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ DL + E+E ++++ + L + YA ++PII + + + Sbjct: 2 KLDDLLGEYYELEQQLADPEVHADQARARTLGKRYAQLTPIIETYRALKEVESDIDTARE 61 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +S +E D + +E L + LL+P+D DDK+ I+E++AG GG E Sbjct: 62 LAAEDSSFAEEAD-------RLTEEAERLTERLRVLLIPRDPADDKNLIMEVKAGEGGEE 114 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-------VFSRMK 177 +ALF GDL RMY RYA + WK EV+ S+ +D GGYK+I +G V+ +K Sbjct: 115 SALFAGDLVRMYLRYAERQGWKTEVIDSTHSDLGGYKDITIAFKNKGTPEPGSGVWPMLK 174 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE+ GR+HTSAA V V+PEA +I+V+I +D+R+D R+SG GGQ V Sbjct: 175 FEGGVHRVQRVPVTESQGRIHTSAAGVLVVPEAEDIEVEIHEKDLRVDVYRSSGPGGQSV 234 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+ +EKSQ QN+ +AM++LRAR+Y + E +A RK Q Sbjct: 235 NTTDSAVRITHLPTGIVASCQNEKSQLQNKEQAMRILRARIYAEAQASADAEAAAERKSQ 294 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + + DRSER+RTYNF + RI+DHR+ Y L+ VL G + ++ L+ A + + +A Sbjct: 295 VRTVDRSERVRTYNFPENRISDHRVGYKAYNLDQVLDGELGGVVKALVDADTKERLEAA 353 >gi|119484803|ref|ZP_01619285.1| Peptide chain release factor 1 [Lyngbya sp. PCC 8106] gi|119457621|gb|EAW38745.1| Peptide chain release factor 1 [Lyngbya sp. PCC 8106] Length = 368 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 145/354 (40%), Positives = 233/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + F E+ LR+++ + +L +E ++I +++ ++ ++E Sbjct: 8 EKLRSFEQTFNELTLRLADPDVSNNPTELQRIAKERSSIEEVVNTYQLWKTAQEELTGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 V + D E++++A +EV ++ ++ +LE + LLLP D +DDK+ +LEIRAGTGG Sbjct: 68 QVQKEAGEDPEMKEMAALEVEELQNQLEQLETHLKVLLLPSDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA +KW+V+++S S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAEGQKWQVKIVSESSADMGGFKEAILEIKGDQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVAV+PE E+DV+I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPLTEAGGRVHTSTATVAVMPEVDEVDVEIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + ++ R+ Q+G+G R Sbjct: 248 VDLIHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLREQQEAVTSMRRSQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ L VL+G +DD+++ + Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFS-LSPVLEGGMDDVVDACVFTDQQERLLELA 360 >gi|119715986|ref|YP_922951.1| peptide chain release factor 1 [Nocardioides sp. JS614] gi|166223579|sp|A1SHH9|RF1_NOCSJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119536647|gb|ABL81264.1| bacterial peptide chain release factor 1 (bRF-1) [Nocardioides sp. JS614] Length = 357 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 149/362 (41%), Positives = 211/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + + A++E R+ + +L + YAA+S II Q + + Sbjct: 3 EAVEGMLAEHADLEQRLGAPETHADARLAKQLNQRYAALSSIIGAYRELQQLDDDIEAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + + +E + E + LL+P+D DDK ILE+++G GG Sbjct: 63 ELAQEDPAFAEEAAALTGRRQEV-------EERLRRLLVPRDAADDKDAILEVKSGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL RMY RYA R WKVEVL ++++D GGYK + + G ++ + Sbjct: 116 ESALFAGDLLRMYTRYAEARGWKVEVLDAAESDLGGYKSVTVAVKAKGTPEPGEAPYALL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFE GVHRVQRVP TE+ GRVHTSAA V VLPEA ++DV I D+RID R+SG GGQ Sbjct: 176 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVLPEAEQVDVQIDENDLRIDVFRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR +AM++LR+RL +++ E R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILRSRLLAAAQEKADAEAGEARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+ + DRSERIRTYNF + RI+DHR Y L+ VL G + +++ + A A + + Sbjct: 296 QVRTVDRSERIRTYNFPENRISDHRTGYKAYNLDQVLDGDLQPVLDSCVEADLAARLEAL 355 Query: 356 SE 357 + Sbjct: 356 EQ 357 >gi|182435969|ref|YP_001823688.1| peptide chain release factor 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776593|ref|ZP_08235858.1| Peptide chain release factor 1 [Streptomyces cf. griseus XylebKG-1] gi|238689014|sp|B1W0B6|RF1_STRGG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|178464485|dbj|BAG19005.1| putative peptide chain release factor 1 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326656926|gb|EGE41772.1| Peptide chain release factor 1 [Streptomyces cf. griseus XylebKG-1] Length = 358 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 150/363 (41%), Positives = 220/363 (60%), Gaps = 21/363 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L +E ++++ KL + YA ++PI+S + Q ++ + Sbjct: 3 EAVEELIGEHTGLEKKLADPSVHADQANARKLNKRYAELTPIVSTYRAWKQTGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +EK+ E+ ++ LL+P+D DDK +LEI+AG GG Sbjct: 63 EFAADDPD-------FAAEVKELEKQREEITEKLRLLLVPRDPSDDKDVLLEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDV 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + A A + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGELDAVIQACVDADSAAKL 355 Query: 353 GSA 355 +A Sbjct: 356 ANA 358 >gi|322379189|ref|ZP_08053581.1| peptide chain release factor 1 [Helicobacter suis HS1] gi|322379995|ref|ZP_08054263.1| peptide chain release factor 1 [Helicobacter suis HS5] gi|321147584|gb|EFX42216.1| peptide chain release factor 1 [Helicobacter suis HS5] gi|321148391|gb|EFX42899.1| peptide chain release factor 1 [Helicobacter suis HS1] Length = 352 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 171/356 (48%), Positives = 251/356 (70%), Gaps = 10/356 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEE 59 LS ++ ++ R+ + L +++ ++ +L++E A++ + Y + + Sbjct: 1 MLSQ-KLKEVVARYDALALCLTQPEVLNDVKRLTELSKEQASLEELAQAAKRYLKILDQI 59 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 Q+ ++ D E+ +LA+ E+ ++E++ + L + I LL+PKD +D K+ LE+RAG Sbjct: 60 QENKALLE----DKELGELAKEELKSLEEQSKNLGDHIKILLIPKDPNDSKNIYLELRAG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA +FVGDLFR Y RYA L++WKVE++SSS+N GGYKE++A I G+GV+SR+KFE Sbjct: 116 TGGDEAGIFVGDLFRTYCRYADLKRWKVEIVSSSENSVGGYKEMIALIKGQGVYSRLKFE 175 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 +G HRVQRVP TE+ GR+HTSA TVA++PEA +++++I D+RI+ RA G GGQ VNT Sbjct: 176 AGTHRVQRVPETESQGRIHTSAITVAIMPEADDVEININPSDLRIEVFRAGGHGGQCVNT 235 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTGI V+ EKSQH+NR +A+K+L+ARLY+ + + SA RK+Q+G Sbjct: 236 TDSAVRITHIPTGISVSMQDEKSQHKNRDKALKILKARLYEKQIEEQQQAHSAERKMQVG 295 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIG 353 SGDRSERIRTYN+ Q R++DHRINLTLY LE ++ G +D +I PL+ QA+ + Sbjct: 296 SGDRSERIRTYNYPQNRLSDHRINLTLYSLEELMLSGNLDPVIEPLIAHAQAQGLE 351 >gi|269215990|ref|ZP_06159844.1| peptide chain release factor 1 [Slackia exigua ATCC 700122] gi|269130249|gb|EEZ61327.1| peptide chain release factor 1 [Slackia exigua ATCC 700122] Length = 356 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 159/357 (44%), Positives = 222/357 (62%), Gaps = 14/357 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + +AEIE ++ + + + L++E+A + ++ K + Y Q ++ D Sbjct: 6 REKLTKIIEGYAEIEEKLGDPAVLADQREYTRLSKEFANQAALVGKANDYLQACRDIDDA 65 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++G D ++R+ AQ + E ++ L I +L+P D D+K I+EIR GG Sbjct: 66 KEMLG----DPDMREFAQETIAESEAKLPALAETIKVMLIPDDPADEKDIIVEIRGAAGG 121 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAA+F GDL++MY R+ R WKVE L +S ++ GG+K+I + G V+S MKFESGV Sbjct: 122 DEAAIFAGDLYKMYVRFCESRGWKVENLDASASEAGGFKKIEFKVKGDHVYSLMKFESGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR+ TS ATVAVLPEA EIDV+I D+RID RA G GGQ VNTTDS Sbjct: 182 HRVQRVPKTESQGRIQTSTATVAVLPEADEIDVEINEGDLRIDVYRAGGPGGQCVNTTDS 241 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+P+G++V + +KSQ QN++ AM VLRARLY+ A R QIGSGD Sbjct: 242 AVRITHLPSGLVVQSQDQKSQLQNKIAAMAVLRARLYEKMLAEQQAAEGAERLAQIGSGD 301 Query: 302 RSERIRTYNFSQGRITDHRINLT-LYKLEYVL--QGYIDDIINPLLTAHQAKMIGSA 355 R+E+IRTYN Q R+TDHRI Y VL G + D+I L A +A+ + A Sbjct: 302 RAEKIRTYNAPQDRVTDHRIGYNGTYN--GVLLADG-LADLIVALQAADRARKLEQA 355 >gi|284929590|ref|YP_003422112.1| peptide chain release factor 1 [cyanobacterium UCYN-A] gi|284810034|gb|ADB95731.1| bacterial peptide chain release factor 1 (bRF-1) [cyanobacterium UCYN-A] Length = 367 Score = 250 bits (637), Expect = 3e-64, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 228/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ F E+ R+++ + + K+ + +++ ++ + + ++E + Sbjct: 9 KLHSVEQTFNELTRRLADPSIATNPNELQKVAKTRSSLEETVNAYEQWKKTEKELLETKQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D E+R++A IE +E ++ LE + LLLP+D +DDK+ +LEIRAGTGG E Sbjct: 69 IVKDAGGDHEMREMASIEAKELEIKLNNLEELMKILLLPRDPNDDKNIMLEIRAGTGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+++ GDL RMY RYA + W V++ + S D GG KE + I+G VFS++KFE+GVHR Sbjct: 129 ASIWAGDLARMYSRYAESQNWVVKLANESLADMGGIKETILEITGDKVFSKLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPVTEAGGRVHTSTATVAIMPEVDEVEVKIDAKDIDMSTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+ + + E S+ RK Q+G+G RS Sbjct: 249 DLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEAKLREQQEEISSMRKSQVGTGSRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+ + L +L+G ID +I ++ Q + + + Sbjct: 309 EKIRTYNYKDNRVTDHRLG-QNFALSGILEGDIDILIESCISQDQQERLQELA 360 >gi|116072171|ref|ZP_01469439.1| peptide chain release factor 1 [Synechococcus sp. BL107] gi|116065794|gb|EAU71552.1| peptide chain release factor 1 [Synechococcus sp. BL107] Length = 365 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ + +L E + + P++ + +QE+ D Sbjct: 9 RLQTATASFRSLERQLADPDVANDPKRLETIARERSRLEPLVLDFEALQKLEQEQVDARE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + SD+ +++LAQ E+ +E + L + LLP+D DD+S +LEIRAG GG E Sbjct: 69 LLRESRSDAAMQELAQNELCELEAQHAALLQRLTLALLPRDPRDDRSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ LS ++ D GGY+E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKLGWSVQQLSCTEADLGGYRELIVSVKGASVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + +D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVQLDPKDLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + ++SQ QNR RA+++LRA+L + E A S++R+ Q+GSGDRS Sbjct: 249 DLLHKPTGIRVFCTQQRSQLQNRERALEILRAKLLERELAAAAERESSDRRSQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ LE VLQG ++D+I + Q + + + SE Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFS-LEPVLQGQLEDLIGACIAEEQRQKLEALSE 361 >gi|226360607|ref|YP_002778385.1| peptide chain release factor 1 [Rhodococcus opacus B4] gi|226239092|dbj|BAH49440.1| peptide chain release factor 1 [Rhodococcus opacus B4] Length = 359 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 214/356 (60%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E ++++ + K + +A ++PI++ + + + + Sbjct: 10 IDDILAEHAGLEQQLADPALHNDASAARKAGKRFAELAPIMATYTRLKSAQDDLDAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D +S EV A+E+++ EL+ + LL P+D D +LE+++G GG E+ Sbjct: 70 AADDSS-------FAAEVPALEEQVLELDKTLTDLLAPRDPHDGDDVVLEVKSGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF DL RMY RYA W+VE+L ++ +D GGYK+ +I GV++R+KFE Sbjct: 123 ALFASDLARMYVRYAERHGWRVEILDATVSDLGGYKDATLSIKSKGDVRDGVWARLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V + PE E++ I D+RID R+SG GGQ VNT Sbjct: 183 GVHRVQRVPVTESQGRVHTSAAGVLIYPEPEEVEEVQIDETDLRIDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + E SA R+ Q+ Sbjct: 243 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQAAAEEAADAEASAGRQSQVR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RITDHRI + L+ VL G +D +++ L + + + + Sbjct: 303 TVDRSERIRTYNFPENRITDHRIGFKSHNLDAVLDGELDALLDALGKSDREARLAA 358 >gi|229816317|ref|ZP_04446624.1| hypothetical protein COLINT_03367 [Collinsella intestinalis DSM 13280] gi|229808073|gb|EEP43868.1| hypothetical protein COLINT_03367 [Collinsella intestinalis DSM 13280] Length = 355 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 149/341 (43%), Positives = 215/341 (63%), Gaps = 7/341 (2%) Query: 5 SHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + F E+E ++S+ + + +L +EYA + ++ Y + Sbjct: 1 MRDKLEKIIIAFEELEKKLSDPAVASDIKEFTRLNKEYAHQTDLVKAAREYLGALDDIDV 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D D++ +++ Q+E+ E ++ +LE +I +L+P D D+K I+EIR+ G Sbjct: 61 AKEMLHDA-VDADEKEMLQMEISENEAKLPQLEEDIKIMLIPGDPMDEKDTIVEIRSAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MY+R+ +KWK+ VL SS ++ GG+K I + G V+S MK+ESG Sbjct: 120 GDEAAIFAGDLFKMYQRFIESKKWKMTVLDSSPSEAGGFKSIEFKVEGDKVYSVMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EID+ I D+R+DT ASG GGQ VNTT Sbjct: 180 VHRVQRVPKTESQGRIQTSTATVAVLPEADEIDIQINQADLRVDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E A R QIG G Sbjct: 240 SAVRITHLPTNTVVQSQEQRSQIQNREVCMQMLRARLYEMELEKQQAELGAERSAQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDII 340 +RSE+IRTYN Q R+TDHRI VL G + D+I Sbjct: 300 NRSEKIRTYNLPQDRVTDHRIGFNSTY-NGVLLGDQLSDVI 339 >gi|67923568|ref|ZP_00517041.1| Peptide chain release factor 1 [Crocosphaera watsonii WH 8501] gi|67854594|gb|EAM49880.1| Peptide chain release factor 1 [Crocosphaera watsonii WH 8501] Length = 370 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + D ++ + +++ ++ + + ++E + Sbjct: 8 EKLQSVEQTYQELTRRLADPDIATNPDELQRVAKLRSSLEETVNTYQTWQETQEELKGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + SD E+R++A +EV +E+ I +LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKEAGSDPEMREMASMEVSELEENIEQLEERLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA ++W V+++S S D GG+KE + I+G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQRWNVKLVSESLADMGGFKEAILEITGEQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE +++++I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDDVEIEIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R+ Q+G+G R Sbjct: 248 VDLMHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLREQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR++ + L+G ID+II ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLSQNFALVGA-LEGDIDNIIESCISQDQQERLAELA 360 >gi|225436757|ref|XP_002269884.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296086617|emb|CBI32252.3| unnamed protein product [Vitis vinifera] Length = 411 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 129/353 (36%), Positives = 220/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +++++ V Y KL + A + ++S + +++ ++ Sbjct: 52 KLESAEKTWKELSVKLADPDIVSNPSEYQKLAQSMAELDEVVSTFKRFKDCEKQLEEAKA 111 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D+++ ++ E+ + +++ELE I LLLP D D ++ +LE+RAGTGG E Sbjct: 112 LAKEDGIDADMAEMIAYEIGTLTNQLKELEENIKVLLLPSDPLDSRNILLEVRAGTGGDE 171 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++Y+ WK +SSS+ + GG+K V + G V+S++K+ESGVHR Sbjct: 172 AGIWAGDLVRMYQKYSERNSWKYAPVSSSEAEKGGFKTYVLEVKGNCVYSKLKYESGVHR 231 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 232 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAV 291 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E++Q QNR RA+++LRA+LY+++ + RK Q+G+G R+ Sbjct: 292 DLFHKPTGIRIFCTEERTQLQNRSRALQLLRAKLYEIKVREQQELIRNQRKSQVGTGARA 351 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+ + ++L L G I+ + + Q +++ + Sbjct: 352 EKIRTYNYKDNRVTDHRLKMN-FELTSFLDGDIETAVQSCVAMEQKELLEELA 403 >gi|300741300|ref|ZP_07071321.1| peptide chain release factor 1 [Rothia dentocariosa M567] gi|311113380|ref|YP_003984602.1| peptide chain release factor RF1 [Rothia dentocariosa ATCC 17931] gi|300380485|gb|EFJ77047.1| peptide chain release factor 1 [Rothia dentocariosa M567] gi|310944874|gb|ADP41168.1| peptide chain release factor RF1 [Rothia dentocariosa ATCC 17931] Length = 360 Score = 249 bits (636), Expect = 4e-64, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 211/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I L + E++ ++++ ++ YA ++ I++ + Y + + Sbjct: 3 ESIQVLLDEHTELQEQLADPAVQANQGKARRVGRRYAELTGIVTAYNKYKSLADDLEAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D + +E+ L LL+P+D DD ++ ILE++AG GG Sbjct: 63 EMASE---DPDFAAEIPTLEAELEEAQERL----RRLLIPRDPDDGRNVILEVKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF GDL RMY RYA + WK EV+SS+ D GGYK+ I GV++ MK Sbjct: 116 EAALFAGDLLRMYLRYAEHKGWKTEVISSTSTDVGGYKDAQIAIKGTSNEPAEGVWAHMK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA V V PE +++I D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVFPEVDEPEEIEISQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR AM+VLRARL +++++ E +A+R Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAAMRVLRARLLAHQQEQIDAENAAHRAS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+ + DRSERIRTYNF + RI DHR Y L+ VL G +D ++ + +A + Sbjct: 296 QVRTMDRSERIRTYNFPENRIADHRTGYKAYNLDAVLDGDLDPVVQSAIEMDEAHRLEQV 355 Query: 356 SE 357 + Sbjct: 356 GQ 357 >gi|32491094|ref|NP_871348.1| hypothetical protein WGLp345 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|30173141|sp|Q8D2K9|RF1_WIGBR RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|25166301|dbj|BAC24491.1| prfA [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 364 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 149/353 (42%), Positives = 233/353 (66%), Gaps = 9/353 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ LKNR+ EI++ +S+ S L++EY+ ++ + + + + Sbjct: 13 QKLKKLKNRYKEIKIILSDPFSAKKQKNFFLLSKEYSKLNILNKYLKSLESINNTIESTK 72 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 T++ D E+ DLA+ E+ + + + +E +I L+P + + +C +EIR+GTGG Sbjct: 73 TMLL----DPEMHDLAKNEINIYKNKKKLIEKKIILYLIPNEDEYICNCFIEIRSGTGGK 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LFV DL RMY +Y+ ++ WK ++++ S+++ GGYKE++ I + ++++KFESG H Sbjct: 129 EASLFVRDLCRMYIKYSEIKNWKTDIINYSNSEHGGYKEVIIKICNKNAYNKLKFESGGH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQR+P TE+ GR+HTS T+AV+PE + I D+RIDT R+SG+GGQH+NTTDS Sbjct: 189 RVQRIPETESQGRIHTSTCTIAVMPEMLDFKLPKIKTSDLRIDTFRSSGAGGQHINTTDS 248 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+RITHIPT I+V E+SQH+N+ +AM VL++RL K + RK +GSGD Sbjct: 249 AIRITHIPTNIVVECQDERSQHKNKSKAMLVLKSRLQANLLKNKKQKEEIIRKSLLGSGD 308 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RS+RIRTYNF QGRITDHRINLT+YK++ V+ G ++ +INP+L ++ + I Sbjct: 309 RSDRIRTYNFPQGRITDHRINLTIYKIDEVMDGNLNILINPILEKYELEKIKE 361 >gi|87124992|ref|ZP_01080839.1| peptide chain release factor [Synechococcus sp. RS9917] gi|86167312|gb|EAQ68572.1| peptide chain release factor [Synechococcus sp. RS9917] Length = 365 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 215/353 (60%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ +L E + + P++ + Q + E Sbjct: 9 RLEAASTSFRNLERQLADPDVAADPKRLETIARERSRLEPLVQDFASLQQVESERDQAKA 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D +++LAQ E+ +E L ++ LLP D D +S +LEIRAG GG E Sbjct: 69 LLRESREDPAMQELAQQELDQLEVRRSALLEQLTLALLPTDPRDGRSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY + W V+ +S++ D GGY+E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACLWAGDLARMYERYGTRQHWTVQPVSANAADLGGYRELILSVKGEAVFSKLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I ++ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVQIDPTELEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+LY+ + S+ R+ Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLYERQLAEANARESSARRAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN R+TDHR+ L+ VL+G +D++I + Q + + S Sbjct: 309 EKIRTYNAKDNRVTDHRLGRNFG-LDPVLEGQLDEVIGACIAEEQRAKLEALS 360 >gi|169351467|ref|ZP_02868405.1| hypothetical protein CLOSPI_02247 [Clostridium spiroforme DSM 1552] gi|169291689|gb|EDS73822.1| hypothetical protein CLOSPI_02247 [Clostridium spiroforme DSM 1552] Length = 358 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 232/360 (64%), Gaps = 6/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M +++ ++NR+ E+ + + K +T+E A++ Y + + Sbjct: 1 MNESMLERLKTMENRYEELGHMLMDPDIGSDIKKMTDVTKEQASLQAAYDLYQEYKEIEN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ + +H D EI+++A++E+ +E+++ ++ ++ L+PKD +D+K I+EIR Sbjct: 61 GIEEAKELAKEH--DPEIKEMAKMELAELEEKLPDVIKKLEIELIPKDPNDNKDVIMEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG E +F GDL+RMY +YA + WKVEV+ + D + GGY I + G GV+ ++K Sbjct: 119 GAAGGDEGNIFAGDLYRMYVKYAESQGWKVEVMEAIDAEAGGYSLISFMVKGEGVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESG HRVQRVP TE GRVHTS ATV V+PE E+DV+I D+RIDT RASG+GGQH+ Sbjct: 179 FESGSHRVQRVPKTETQGRVHTSTATVLVMPEVEEVDVEINKNDLRIDTYRASGAGGQHI 238 Query: 238 NTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRITHIPTGI+ + +SQH N+ +AMK L AR+YD +++ + + RK + Sbjct: 239 NKTDSAVRITHIPTGIVAASQDGRSQHDNKDKAMKALIARIYDYYQQQQDQQVESERKSK 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+GDR+E+IRTYN+ Q R+TDHRI LT+ +L+ +++G +DDII L+ Q + + Sbjct: 299 VGTGDRAEKIRTYNYPQNRVTDHRIGLTIQQLDRIIEGKLDDIITALINEDQRLKLEGQN 358 >gi|126658019|ref|ZP_01729171.1| peptide chain release factor 1 [Cyanothece sp. CCY0110] gi|126620657|gb|EAZ91374.1| peptide chain release factor 1 [Cyanothece sp. CCY0110] Length = 369 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 236/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + D ++ + +++ ++ + + ++E + Sbjct: 8 EKLQSVEQTYQELTRRLADPDIATNPDELQRVAKARSSLEETVNTYKTWQETQEELKGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A +EV +E+++++LE ++ LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QIVKEAGGDPEMREMAAMEVSELEEQLQQLEEQLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA +KW V+++S S D GG+KE + I+G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQKWNVKLVSESLADMGGFKEAILEITGDQVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE E+++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDEVEIQIDPKDIEMTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+ + + S+ R+ Q+G+G R Sbjct: 248 VDLMHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEAKLREQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ + L L+G ID+II ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLG-QNFALAGALEGNIDNIIETCISQDQQERLAELA 360 >gi|166368082|ref|YP_001660355.1| peptide chain release factor 1 [Microcystis aeruginosa NIES-843] gi|189039979|sp|B0JYC5|RF1_MICAN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166090455|dbj|BAG05163.1| peptide chain release factor 1 [Microcystis aeruginosa NIES-843] Length = 366 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 143/354 (40%), Positives = 231/354 (65%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ ++ + E+ R+++ +L + A++ ++ I+ + +++ Sbjct: 8 DKLQSVEQTYKELTRRLADPDVTGNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD E+R++A +EV +E++I LE+++ LLLP+D D+K+ +LEIRAGTGG Sbjct: 68 QIFKESASDPELREMAALEVAELEEKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL R+Y +YA + WKV +LS S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRLYSKYAETQNWKVSLLSESQADMGGFKEAILEIKGDNVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEASGRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LYD++ + S+ R+ Q+G+G R Sbjct: 248 VDLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDMKLQEQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+N L+ +L G I+++I + Q + + + Sbjct: 308 SEKIRTYNYKDNRLTDHRLNQNFS-LDRILDGDIEEVIQSCIAKDQQEKLAELA 360 >gi|78066892|ref|YP_369661.1| peptide chain release factor 2 [Burkholderia sp. 383] gi|77967637|gb|ABB09017.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia sp. 383] Length = 391 Score = 249 bits (635), Expect = 5e-64, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 54 DAKAARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTALDSDLRDALDLFELA 113 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + I + + + D +C ++I+AG GG+EA Sbjct: 114 REEGDEDTLVASEEDAAKLASRVGD-----IEFRRMFSNPADPNNCFIDIQAGAGGTEAC 168 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 169 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATVKVSGEYAYGFLRTETGIHRLV 228 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 229 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 288 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+VE ++ E+ + K +G G Sbjct: 289 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEVEMRKRQAEQDKLESSKTDVGWG-- 346 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + VL G +DD I+ L Sbjct: 347 -HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFISASLKQ 389 >gi|159027581|emb|CAO86953.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 366 Score = 249 bits (635), Expect = 6e-64, Method: Composition-based stats. Identities = 144/353 (40%), Positives = 230/353 (65%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + E+ R+++ +L + A++ ++ I+ + +++ Sbjct: 9 KLQSVEQTYTELTRRLADPDVTSNPGELHRLAKSRASLEETVNTYEIWQKSQEDLIGAKQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + SD E+R++A +EV +E +I LE+++ LLLP+D D+K+ +LEIRAGTGG E Sbjct: 69 IFKESASDPELREMAALEVAELEAKIATLEDQLTILLLPRDPLDEKNIMLEIRAGTGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+++ GDL R+Y +YA + WKV +LS S D GG+KE + I G V+S++KFE+GVHR Sbjct: 129 ASIWAGDLVRLYSKYAETQNWKVSLLSESPADMGGFKEAILEIKGDNVYSKLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEASGRVHTS ATVA++PE +++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPLTEASGRVHTSTATVAIMPEVDDVEVHIDPKDIELTTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LYD++ + S+ R+ Q+G+G RS Sbjct: 249 DLIHKPTGIRVFCTEERSQLQNRERAMQILRAKLYDIKLQEQQEAVSSMRRSQVGTGSRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+N + L+ +L G I+D+I + Q + + Sbjct: 309 EKIRTYNYKDNRLTDHRLN-ENFSLDRILDGDIEDVIQSCIAKDQQGKLEELA 360 >gi|297192053|ref|ZP_06909451.1| peptide chain release factor 1 [Streptomyces pristinaespiralis ATCC 25486] gi|197719497|gb|EDY63405.1| peptide chain release factor 1 [Streptomyces pristinaespiralis ATCC 25486] Length = 359 Score = 248 bits (634), Expect = 6e-64, Method: Composition-based stats. Identities = 147/352 (41%), Positives = 216/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI+ + + ++ Sbjct: 3 EAVEELIGEHADLEKKLADPSVHADQANARKLNKRYAELTPIVGTYRAWKRTGEDIGTAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +EKE L ++ LL+P+D DDK ILE++AG GG Sbjct: 63 ELAQDDPD-------FAAEVKDLEKEREALTEKLRLLLVPRDPSDDKDVILEVKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA EIDV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEIDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+ +EKSQ QN+ +AM++LR+RL ++ ++ + Sbjct: 236 GQSVNTTDSAVRITHLPTGIVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAESKAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAVIQACV 347 >gi|56751903|ref|YP_172604.1| peptide chain release factor 1 [Synechococcus elongatus PCC 6301] gi|81301012|ref|YP_401220.1| peptide chain release factor 1 [Synechococcus elongatus PCC 7942] gi|81561678|sp|Q5N0T6|RF1_SYNP6 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119361627|sp|Q31L36|RF1_SYNE7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|56686862|dbj|BAD80084.1| peptide chain release factor RF-1 [Synechococcus elongatus PCC 6301] gi|81169893|gb|ABB58233.1| bacterial peptide chain release factor 1 (bRF-1) [Synechococcus elongatus PCC 7942] Length = 368 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 232/355 (65%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F ++ R+++ + ++ +++ +++ + Q+ E + Sbjct: 8 EKLQSVEQTFQDLTRRLADPEIATDPREFQRVARMRSSMEELVTTYEEWKQRDAELKGAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + D E+R++A +EV +E + LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 EILRESSGDPELREMAALEVNELEALLVSLEERLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+L+ GDL RMY RYA + W+V++LS S + GGYKE + I G V+S++KFE+GVH Sbjct: 128 EASLWAGDLLRMYSRYAESQGWRVKLLSESTGELGGYKEAILEIQGESVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEA GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEAGGRVHTSTATVAIMPEVDEVEVSIDPKDIELTTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R+ Q+G+G R Sbjct: 248 VDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEMKLQEQQEAVSSMRRSQVGTGSR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ R TDHR+ L L VL+G I+++I ++ Q + + ++ Sbjct: 308 SEKIRTYNYKDNRATDHRLGLNFS-LNPVLEGEIEEVIQACISKDQTEQLAQMAQ 361 >gi|191166656|ref|ZP_03028484.1| peptide chain release factor 1 [Escherichia coli B7A] gi|190903305|gb|EDV63026.1| peptide chain release factor 1 [Escherichia coli B7A] Length = 321 Score = 248 bits (634), Expect = 7e-64, Method: Composition-based stats. Identities = 166/320 (51%), Positives = 236/320 (73%), Gaps = 6/320 (1%) Query: 40 AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINY 99 A++S + + + Q +++ + ++ D E+R++AQ E+ +++ +LE ++ Sbjct: 4 ASLSDVSRCFTDWQQVQEDIETAQMML----DDPEMREMAQDELREAKEKSEQLEQQLQV 59 Query: 100 LLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG 159 LLLPKD DD+++ LE+RAGTGG EAALF GDLFRMY RYA R+W+VE++S+S+ + GG Sbjct: 60 LLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGG 119 Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIP 218 YKEI+A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTSA TVAV+PE + + DI Sbjct: 120 YKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDIN 179 Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR+ Sbjct: 180 PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARI 239 Query: 278 YDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 + E + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D Sbjct: 240 HAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLD 299 Query: 338 DIINPLLTAHQAKMIGSASE 357 +I P++ HQA + + SE Sbjct: 300 MLIEPIIQEHQADQLAALSE 319 >gi|291618681|ref|YP_003521423.1| PrfB [Pantoea ananatis LMG 20103] gi|291153711|gb|ADD78295.1| PrfB [Pantoea ananatis LMG 20103] Length = 430 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ Q ++ Q L + Sbjct: 93 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTFDQMSQGLEDVQGLLDLA 152 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E+ + + D C ++++AG+GG+EA Sbjct: 153 VEADDEETFNEAV-----AELDALEGKLGELEFRRMFSGEYDSADCYIDLQAGSGGTEAQ 207 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K + +SG F ++ E+GVHR+ Sbjct: 208 DWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGIKSVTIRVSGDYAFGWLRTETGVHRLV 267 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 268 RKSPFDSGGRRHTSFSSAFIYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVR 327 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 328 ITHVPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQMLEDNKSDIGWG-- 385 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 386 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 428 >gi|149196233|ref|ZP_01873288.1| peptide chain release factor 1 [Lentisphaera araneosa HTCC2155] gi|149140494|gb|EDM28892.1| peptide chain release factor 1 [Lentisphaera araneosa HTCC2155] Length = 358 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 235/358 (65%), Gaps = 6/358 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M+ +S +++ L+ RF ++E +S+ D Y L++E+ +S ++ ++ K Sbjct: 1 MIDIS-ERVERLRMRFKQVESELSDPSVFDDKDRYQDLSKEHQRLSSLVQTYDRQEEVKA 59 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E D ++ SD E++++ ++++ +E+E+ LE ++ L++P D +D ++CI+EIR Sbjct: 60 ELADNKEMLS-GESDEELKEMIKLDMAGLEEELPLLEKKLMMLIVPPDPNDSRNCIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EAALF DL +MY+ Y++ + WKVEV+ + +D GG K V ++ G VF + Sbjct: 119 PAAGGDEAALFAEDLMKMYQIYSSNKSWKVEVMEYTPSDLGGLKATVFSVKGEDVFRELN 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQR+P TE GRVHTS TVAVLPEA E+D+ I ++++ DT R+SG+GGQ V Sbjct: 179 FESGVHRVQRIPKTETQGRVHTSTVTVAVLPEAEEVDLHIDPKELKFDTYRSSGAGGQCV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+THIPTG+ + E+SQHQN+ AM++LR++L D + ++ + S R+ Q Sbjct: 239 NTTDSAVRVTHIPTGLACYSQQERSQHQNKEIAMQLLRSKLLDEKIRQEKQKMSDERRGQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 IG+GDRSERIRTYN+ Q RITDHR +T++ L V+ G D+++ +L + + Sbjct: 299 IGTGDRSERIRTYNYPQSRITDHRFGVTVHNLPDVMAGKFADVMDKILAIDAEQRLAE 356 >gi|148238741|ref|YP_001224128.1| peptide chain release factor 1 [Synechococcus sp. WH 7803] gi|166223613|sp|A5GIR6|RF1_SYNPW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|147847280|emb|CAK22831.1| Peptide chain release factor 1 [Synechococcus sp. WH 7803] Length = 365 Score = 248 bits (634), Expect = 8e-64, Method: Composition-based stats. Identities = 142/353 (40%), Positives = 221/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ F +E ++++ +L E + + P+++ + + E + Sbjct: 9 RLEAARSSFHNLERQLADPDVASDPTRLQSIARERSRLEPLVNDYASLQAVQSEREQARE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D E+ LAQ+E+ ++ L + LLP+D D++S +LEIRAG GG E Sbjct: 69 LLRDSRGDEEMAHLAQLELDELDIRHEALIERLTLALLPRDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYER+++ R W V+ +S+S+ D GG+KE++ ++ G VFS +KFE+GVHR Sbjct: 129 ACLWAGDLARMYERFSSRRGWTVQPVSASEADLGGFKELILSVKGESVFSELKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVQIEPADLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E+SQ QNR RAM++LRA+LY+ + S+ R+ Q+G+GDRS Sbjct: 249 DLMHRPSGIRVFCTQERSQLQNRERAMEILRAKLYERQLAEANARESSARRAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN R+TDHR+ L+ VLQG ++D+I + Q + + S Sbjct: 309 EKIRTYNAKDNRVTDHRLGRNFS-LDPVLQGQMEDVIGACIAEEQRSKLEALS 360 >gi|297202390|ref|ZP_06919787.1| peptide chain release factor 1 [Streptomyces sviceus ATCC 29083] gi|197710089|gb|EDY54123.1| peptide chain release factor 1 [Streptomyces sviceus ATCC 29083] Length = 358 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 145/352 (41%), Positives = 215/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVEELVGEHADLEKKLADPSVHSDQANARKLNKRYAELTPIVATYRSWKQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D D+E + A ++ +L LL+P+D DDK ILEI+AG GG Sbjct: 63 ELGAD---DAEFAAEVKELEKARDELTEKL----RLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITHIPTG++ +EKSQ QN+ +A+++LR+RL ++ + Sbjct: 236 GQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAERNAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKSYNLDQVLDGDLDAVIQACV 347 >gi|170733471|ref|YP_001765418.1| peptide chain release factor 2 [Burkholderia cenocepacia MC0-3] gi|169816713|gb|ACA91296.1| peptide chain release factor 2 [Burkholderia cenocepacia MC0-3] Length = 391 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 54 DAKAARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTALDSDLRDALDLFELA 113 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 114 REEGDEDTLLASE-----DDAAKLEARVGDIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 168 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K ++G + ++ E+G+HR+ Sbjct: 169 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATVKVTGEYAYGFLRTETGIHRLV 228 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 229 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 288 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+VE ++ E+ + K +G G Sbjct: 289 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEVEMRKRQAEQDKLESSKTDVGWG-- 346 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + VL G +DD I+ L Sbjct: 347 -HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFISASLKQ 389 >gi|172038958|ref|YP_001805459.1| peptide chain release factor 1 [Cyanothece sp. ATCC 51142] gi|171700412|gb|ACB53393.1| peptide chain release factor 1 [Cyanothece sp. ATCC 51142] Length = 375 Score = 248 bits (633), Expect = 9e-64, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 234/354 (66%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ + E+ R+++ + D ++ + +++ ++ + + ++E + Sbjct: 14 EKLQSVEQTYQELTRRLADPDIATNPDELQRVAKARSSLEETVNTYKTWQETQEELKGAK 73 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+R++A +EV +E+++ +LE + LLLP+D +DDK+ +LEIRAGTGG Sbjct: 74 QIVKEAGGDPEMREMAAMEVSELEEKLEQLEERLKILLLPRDPNDDKNIMLEIRAGTGGD 133 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA +KW V+++S S D GG+KE + I+G V+S++KFE+GVH Sbjct: 134 EASIWAGDLVRMYSRYAESQKWNVKLVSESLADMGGFKEAILEITGDQVYSKLKFEAGVH 193 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE E+++ I +DI + T R+ G+GGQ+VN ++A Sbjct: 194 RVQRVPVTEAGGRVHTSTATVAIMPEVDEVEIQIDPKDIEMTTARSGGAGGQNVNKVETA 253 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+LY+ + + S+ R+ Q+G+G R Sbjct: 254 VDLFHKPTGIRIFCTEERSQLQNRERAMQILRAKLYEAKLREQQEAVSSMRRSQVGTGSR 313 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ + L L+G ID+II ++ Q + + + Sbjct: 314 SEKIRTYNYKDNRVTDHRLG-QNFALAGALEGNIDNIIETCISQDQQERLAELA 366 >gi|328885059|emb|CCA58298.1| Peptide chain release factor 1 [Streptomyces venezuelae ATCC 10712] Length = 358 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 146/352 (41%), Positives = 219/352 (62%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVEELVGEHADLEKKLADPSVHADQANARKLNKRYAELTPIVATYRAWKQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +EK+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAHDDPD-------FAAEVKQLEKDRDELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE++GR+HTSAA V V PEA E++V+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESAGRIHTSAAGVLVTPEAEEVEVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+ +EKSQ QN+ +AM++LR+RL ++ ++ + Sbjct: 236 GQSVNTTDSAVRITHLPTGIVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAESKAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAMIQACV 347 >gi|107028703|ref|YP_625798.1| peptide chain release factor 2 [Burkholderia cenocepacia AU 1054] gi|116690138|ref|YP_835761.1| peptide chain release factor 2 [Burkholderia cenocepacia HI2424] gi|105897867|gb|ABF80825.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia cenocepacia AU 1054] gi|116648227|gb|ABK08868.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia cenocepacia HI2424] Length = 391 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 54 DAKAARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTALDSDLRDALDLFELA 113 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 114 REEGDEDTLLASE-----DDAAKLEARVGDIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 168 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K ++G + ++ E+G+HR+ Sbjct: 169 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATVKVTGEYAYGFLRTETGIHRLV 228 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 229 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 288 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+VE ++ E+ + K +G G Sbjct: 289 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEVEMRKRQAEQDKLESSKTDVGWG-- 346 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + VL G +DD I+ L Sbjct: 347 -HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFISASLKQ 389 >gi|119897788|ref|YP_933001.1| peptide chain release factor 2 [Azoarcus sp. BH72] gi|119670201|emb|CAL94114.1| peptide chain release factor [Azoarcus sp. BH72] Length = 373 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ E+ + + + +L +E + ++ + +Q+ + +DL + Sbjct: 36 DEKSSKLEEVNRALEDPAVWNDAARAQELGKEKRQLEGVVLTLQQIEQQSADLKDLFDLA 95 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + + L ++ + + + D +C +EI+AG GG+EA Sbjct: 96 DMEGDDDTFEAVE-----GDLVGLEALVGQLEFRRMFSNPMDPNACFIEIQAGAGGTEAQ 150 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L RMY RY + + VE++ ++ + G K +G + ++ E+G+HR+ Sbjct: 151 DWAGMLERMYLRYGEKKGFTVELMEETEGEVAGIKNCTIKFTGDYAYGFLRTETGIHRLV 210 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS +V V PE + +++I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 211 RKSPFDSNARRHTSFTSVFVYPEVDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVR 270 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PTGI+V +++SQH+N+ AM +L+ARLY++E ++ E+ + K IG G Sbjct: 271 ITHQPTGIVVQCQNDRSQHRNKDEAMSMLKARLYELELRKRQAEQQKLEDAKSDIGWG-- 328 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + VL G ++D I L Sbjct: 329 -HQIRSYVLDQSRIKDLRTGYEVGNTQAVLDGDLEDFIAASLKQ 371 >gi|57504876|ref|ZP_00370851.1| peptide chain release factor 1 [Campylobacter coli RM2228] gi|305432416|ref|ZP_07401578.1| peptide chain release factor RF1 [Campylobacter coli JV20] gi|57019304|gb|EAL56006.1| peptide chain release factor 1 [Campylobacter coli RM2228] gi|304444455|gb|EFM37106.1| peptide chain release factor RF1 [Campylobacter coli JV20] Length = 355 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 170/354 (48%), Positives = 242/354 (68%), Gaps = 9/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ RF E+ +S S + L++E + PI+ K Y + ++ T Sbjct: 5 KLDPFLKRFEELNSLLSSSDIISDISKMTALSKEQKNLEPIVLKAKEYLKTLDSIEENKT 64 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +D+E+ +LA+ E+ +E+ +LE E+ LLLPKD +D+++ LEIRAGTGG E Sbjct: 65 LL----NDAELGELAKEELKNLEELKPKLEEELKILLLPKDPNDERNIFLEIRAGTGGDE 120 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LFVGDL + Y RYA R +K+E++SSS+ GG+KEI+ + G G FSR+K+E G HR Sbjct: 121 ASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEIIMLVKGAGAFSRLKYEGGTHR 180 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GR+HTSA T+AV+PE +I+++I D++ID MR+SG GGQ VNTTDSAV Sbjct: 181 VQRVPQTESQGRIHTSAITIAVMPEVDDIEIEINPNDLKIDVMRSSGHGGQSVNTTDSAV 240 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V KSQH+N+ AMKVL+ARLY+++ + S RK Q+GSGDRS Sbjct: 241 RITHLPTGIVVVNQDGKSQHKNKESAMKVLKARLYEMQESERLAQESEARKSQVGSGDRS 300 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q RI+DHRINLTLY+L+ +L G D++I PL+ +QA+ + + Sbjct: 301 ERIRTYNFPQNRISDHRINLTLYRLDAILQDGLFDEVIEPLIAHYQAESLQEQN 354 >gi|254778803|ref|YP_003056908.1| peptide chain release factor 1 [Helicobacter pylori B38] gi|254000714|emb|CAX28630.1| Peptide chain release factor 1 (RF-1) [Helicobacter pylori B38] Length = 352 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y ++ Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLED 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRFKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ RLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKVRLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|297182853|gb|ADI19004.1| protein chain release factor a [uncultured alpha proteobacterium HF0070_05I22] Length = 334 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 182/333 (54%), Positives = 238/333 (71%), Gaps = 3/333 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + R E+E ++S S + A L+ E + + P+ +I + + E + Sbjct: 1 MSIDSSMDKVLERRQEVETKLSRSAELSSKALADLSRELSELRPVCEQIELVRALESELK 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + D E++ +A+ EV +++ I + + LLLPKD DD ++ ILE+RAGT Sbjct: 61 DAITMVVEAAGDDEMQAMAEAEVTLLKERIPIEKERLQLLLLPKDKDDSRNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +LF MY+R+AA W+ EV+ S+ GGYKE ATISG VF+R+KFES Sbjct: 121 GGDEAALFGANLFSMYQRFAAKNGWRFEVMEVSETGIGGYKEATATISGIDVFARLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GR+HTSAATVAVLPEA E+D+DI D+RID R+SG GGQ VNTT Sbjct: 181 GVHRVQRVPETEAGGRIHTSAATVAVLPEAEEVDIDIDENDLRIDVFRSSGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ + KSQH+NR +AMK+LRARLYD ER R+ +ER+A RK Q+GS Sbjct: 241 DSAVRITHMPTGIVVSQQDEKSQHKNRAKAMKILRARLYDAERARVESERAAARKGQVGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 GDRSERIRTYNF QGR+TDHRINLTLYKL+ V+ Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLYKLDRVM 333 >gi|219684506|ref|ZP_03539449.1| peptide chain release factor 1 [Borrelia garinii PBr] gi|219671868|gb|EED28922.1| peptide chain release factor 1 [Borrelia garinii PBr] Length = 357 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 251/355 (70%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ +E ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MFLEKLNSATSKIKSLEEKLQDINLIKNQKKYSKIIKEYTHLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTIL-EKEDQQEMKELIKQELIDLDKKREDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEIV I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDQLLDPLTIELQEQKLKS 354 >gi|254431314|ref|ZP_05045017.1| peptide chain release factor 1 [Cyanobium sp. PCC 7001] gi|197625767|gb|EDY38326.1| peptide chain release factor 1 [Cyanobium sp. PCC 7001] Length = 365 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 153/357 (42%), Positives = 223/357 (62%), Gaps = 5/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 L H ++ + F +E ++++ + D + E A + P++ + EE Sbjct: 5 LLHDRLEAARRTFETLERQLADPAVASNPDQLQAIARERARLEPLVLDQRQLQKLLAEEA 64 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ DH D + +LA E+ + + I L + LLP+D D++S +LEIRAG Sbjct: 65 DARTLLRDHRGDRAMEELASEELKQLAERIHSLRTSLTIALLPRDPRDERSVMLEIRAGA 124 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA++ GDL RMYERYA W+VE +S+S+ + GGYKE++ +I G GVFS++KFE+ Sbjct: 125 GGDEAAIWAGDLARMYERYAQSVGWRVEPVSASEAELGGYKELILSIRGEGVFSQLKFEA 184 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN Sbjct: 185 GVHRVQRVPATESQGRVHTSTATVAVMPEADPVEVQIEPGDVEISTARSGGAGGQNVNKV 244 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H P+GI + + E+SQ QNR RAM++LRA+LY+ + + R Q+GS Sbjct: 245 ETAVDLLHKPSGIRVFCTQERSQMQNRERAMEILRAKLYERQLAEANARERSARLAQVGS 304 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSE+IRTYN+ R TDHR+ LE VL G + D+I + A QA+ + + Sbjct: 305 GDRSEKIRTYNYKDNRATDHRLGRNFS-LEPVLNGQLQDVIGACIAADQARQLDELA 360 >gi|315453082|ref|YP_004073352.1| peptide chain release factor 1 [Helicobacter felis ATCC 49179] gi|315132134|emb|CBY82762.1| peptide chain release factor 1 [Helicobacter felis ATCC 49179] Length = 349 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 171/352 (48%), Positives = 245/352 (69%), Gaps = 9/352 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ + R+ I +++ + +L++E A + + Y Q + Q Sbjct: 1 MLSEKLQAIVQRYDAIAHSLTQPEVLGDIKQLTELSKEQAGLEELAQVAKTYLQTLEGIQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + +++ D E+ +LA+ E+ +E+E LE I LL+PKD +D+K+ LE+RAGT Sbjct: 61 ENKSLLE----DKELGELAKEELKVLEEEKLSLEERIKILLIPKDPNDNKNIYLELRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKE++A I G+GV+SR+KFE+ Sbjct: 117 GGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEMIALIKGQGVYSRLKFEA 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE +++V+I D+RI+ RA G GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRIHTSAVTVAIMPEVDDVEVNINPNDLRIEVFRAGGHGGQCVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI V+ EKSQH+NR +A+K+L+ARLY+ + + S +RK+Q+GS Sbjct: 237 DSAVRITHIPTGISVSMQDEKSQHKNRDKALKILKARLYEKQIEEQQQANSESRKMQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GDRSERIRTYN+ Q R++DHRINLTLY LE ++ G +D +I PL+ QA+ Sbjct: 297 GDRSERIRTYNYPQNRLSDHRINLTLYSLEEIMLSGNLDPVIEPLIAHAQAQ 348 >gi|302869596|ref|YP_003838233.1| peptide chain release factor 1 [Micromonospora aurantiaca ATCC 27029] gi|315503942|ref|YP_004082829.1| peptide chain release factor 1 [Micromonospora sp. L5] gi|302572455|gb|ADL48657.1| peptide chain release factor 1 [Micromonospora aurantiaca ATCC 27029] gi|315410561|gb|ADU08678.1| peptide chain release factor 1 [Micromonospora sp. L5] Length = 362 Score = 248 bits (632), Expect = 1e-63, Method: Composition-based stats. Identities = 155/365 (42%), Positives = 214/365 (58%), Gaps = 18/365 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +++ L + +AE+E R+++ ++ YA + P + E + Sbjct: 1 MSSERLAALLDEYAELERRLADPAIHADQGTARRVGRRYAELVP-------LHKAAGELE 53 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + +E I + LE + LL+P+D D K I+EI+AG Sbjct: 54 QARADLAAARELAAEDATFAVEADTIAASLPALEERLAELLIPRDPHDAKDVIVEIKAGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVF 173 GG E+ALF GDL RMY RYA W EV+ + D+D GG K++ I GV+ Sbjct: 114 GGEESALFAGDLLRMYTRYAERHGWVTEVIDAQDSDLGGVKDVSLAIKSKGVPEGGNGVW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+E GVHRVQRVP TE+ GR+HTSAA V VLPEA ++DV I ++RID R+SG G Sbjct: 174 SRLKWEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEDVDVTIDPNELRIDVFRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QNR +AM++LRARL +++ S Sbjct: 234 GQSVNTTDSAVRITHVPTGIVVSCQNEKSQLQNREQAMRILRARLLAAAQEQADAAASDA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 RK Q+ + DRSERIRTYNF Q RITDHRI T Y L+ L G +D +++ L A +A + Sbjct: 294 RKAQVRTVDRSERIRTYNFPQNRITDHRIGYTAYNLDLALAGELDGVLDALAEADRAARL 353 Query: 353 GSASE 357 +E Sbjct: 354 AGETE 358 >gi|78185551|ref|YP_377985.1| peptide chain release factor 1 [Synechococcus sp. CC9902] gi|119361629|sp|Q3AW64|RF1_SYNS9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78169845|gb|ABB26942.1| bacterial peptide chain release factor 1 (bRF-1) [Synechococcus sp. CC9902] Length = 365 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 226/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ + +L E + + P++ + +QE+ D Sbjct: 9 RLQTATASFRSLERQLADPDVANDPKRLETIARERSRLEPLVLDFEALQKLEQEQADARE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + SD+ +++LAQ E+ +E + L + LLP+D DD+S +LEIRAG GG E Sbjct: 69 LLRESRSDAAMQELAQDELSELEAQHTALLQRLTLALLPRDPRDDRSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ LS ++ D GGY+E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKLGWSVQQLSCTEADLGGYRELIVSVKGTSVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V++ +D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVELDPKDLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + ++SQ QNR RA+++LRA+L + E A S++R+ Q+GSGDRS Sbjct: 249 DLLHKPTGIRVFCTQQRSQLQNRERALEILRAKLLERELAAAAERESSHRRSQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ LE VLQG ++D+I + Q + + + SE Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFS-LEPVLQGQLEDLIGACIAEEQRQKLEALSE 361 >gi|91201018|emb|CAJ74075.1| strongly similar to class I peptide chain release factor [Candidatus Kuenenia stuttgartiensis] Length = 360 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 162/353 (45%), Positives = 238/353 (67%), Gaps = 8/353 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ D++ R+ E+E +++ + Y+ L +E+ +S I+ K + + +QD Sbjct: 8 KRLEDMQKRYNELENLLADPQVIADSGRYMSLMKEHGCLSKIVHKYAQLTKTYIRKQDAE 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ SD E D+A++E+ +E + + +EI L + +D +K+ I EIRAGTGG Sbjct: 68 NLL----SDGEFADMARMELDELEGHEKAIMDEIKELFIAEDKTANKNVIAEIRAGTGGE 123 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA+F DLFRMY +YA + WK E+ ++ D GG+KE+ +I GR V+ +++FESG H Sbjct: 124 EAAIFAADLFRMYIKYAESQNWKTELFDYNETDLGGFKEVTFSIEGRNVYQKLRFESGTH 183 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEASGRVHTS ATVA+LPE E+++DI DI I+T RASG GGQ VN T SA Sbjct: 184 RVQRVPQTEASGRVHTSTATVAILPEVEEVEIDINPADILIETFRASGPGGQKVNKTSSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHI TGI+V EKSQH+N+ +AM++LR+RL++ ++ ER R++QIG+GDR Sbjct: 244 VRITHISTGIVVKCLDEKSQHKNKAKAMRILRSRLHESIEEKNQLERDQVRRIQIGTGDR 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 SE+IRTYN+SQ R+TDHRIN ++Y LE+V+ GY+D+II L ++ + Sbjct: 304 SEKIRTYNYSQNRVTDHRINFSVYNLEHVMLGYLDEIIAALANHYREDQLKQL 356 >gi|308183875|ref|YP_003928008.1| peptide chain release factor 1 [Helicobacter pylori SJM180] gi|308059795|gb|ADO01691.1| peptide chain release factor 1 [Helicobacter pylori SJM180] Length = 352 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y ++ Sbjct: 1 MSILAEKLSSILKRYDELTALLSNAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLED 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVEV+SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V + D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|154248977|ref|YP_001409802.1| peptide chain release factor 1 [Fervidobacterium nodosum Rt17-B1] gi|154152913|gb|ABS60145.1| peptide chain release factor 1 [Fervidobacterium nodosum Rt17-B1] Length = 347 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 167/346 (48%), Positives = 219/346 (63%), Gaps = 12/346 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 +K EIE +M E+ + IK++ E+ I I+ Y E + Sbjct: 8 VKKTLEEIEKKMMENLELKEMIKISAEFTKFKEIDELINEYFNLLDE----KELWEQEPG 63 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + +I ++ NEI LLLP D D++ LEIRAGTGG EAALF GD Sbjct: 64 SEDEIAKL-------DSKIEKISNEIIALLLPDDEFRDRNVFLEIRAGTGGEEAALFAGD 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY RY+ W E++ S +D GGYKE+V I G+ + MK+E GVHRVQR+P T Sbjct: 117 LLRMYLRYSERMGWSTEIIDESKSDLGGYKEVVVRIKGKNSGTYMKYERGVHRVQRIPVT 176 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 E+ GR+HTS ATVAVLPE ++DV I +DIRIDT RASG+GGQ+VN T+SA+RITHIPT Sbjct: 177 ESGGRIHTSTATVAVLPEMKDVDVYIDPKDIRIDTYRASGAGGQYVNKTESAIRITHIPT 236 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI+V SE+SQHQN+ +AM VLRA+LY++ RK + S+ RK QIGSG+RSE+IRTYN Sbjct: 237 GIVVTCQSERSQHQNKEKAMMVLRAKLYELARKEQDEKLSSQRKNQIGSGERSEKIRTYN 296 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 F Q R+TDHRINLT+Y L+ VL G +D II L+ + + Sbjct: 297 FPQNRVTDHRINLTIYNLQAVLDGDLDLIIPKLMQYDIEEQLRELG 342 >gi|72162818|ref|YP_290475.1| peptide chain release factor 1 [Thermobifida fusca YX] gi|119361632|sp|Q47M70|RF1_THEFY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71916550|gb|AAZ56452.1| bacterial peptide chain release factor 1 (bRF-1) [Thermobifida fusca YX] Length = 355 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 221/361 (61%), Gaps = 18/361 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ DL + E+E ++++ L + Y+ ++PI++ ++ + + + Sbjct: 2 KLDDLLGEYYELEQQLADPAVHADQAQARTLAKRYSQLTPIVATYRELNRVESDIETAQE 61 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + S ++ + EL + LL+P+D +DDK ILE++AG GG E Sbjct: 62 LAAEDPSFADEAKQL-------AAQREELVQRLRTLLIPRDPNDDKDVILEVKAGEGGEE 114 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVFSRMK 177 +ALF DL RMY RYA + WK E++S++ +D GGYK+I I +GV+ R+K Sbjct: 115 SALFASDLVRMYLRYAERQGWKTEIISATHSDLGGYKDITIAIKNRGTVEPGQGVWHRLK 174 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE+ GR+HTSA V VLPEA EI+V+I D+RID R+SG GGQ V Sbjct: 175 FEGGVHRVQRVPVTESQGRIHTSAVGVLVLPEAEEIEVEINESDLRIDVYRSSGPGGQSV 234 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V +EKSQ QN+ +A++VLRARL + E +A R+ Q Sbjct: 235 NTTDSAVRITHLPTGIVVSCQNEKSQLQNKEQALRVLRARLLAEAQAAAEAEAAAERRSQ 294 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSER+RTYNF + RI+DHR+ Y L+ VL G +D +I L+ A + + +A Sbjct: 295 VRTVDRSERVRTYNFPENRISDHRVGYKAYNLDQVLDGELDGVIQALVDADTKERLEAAQ 354 Query: 357 E 357 + Sbjct: 355 Q 355 >gi|208434043|ref|YP_002265709.1| peptide chain release factor RF-1 [Helicobacter pylori G27] gi|238058715|sp|B5Z680|RF1_HELPG RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|208431972|gb|ACI26843.1| peptide chain release factor RF-1 [Helicobacter pylori G27] Length = 352 Score = 247 bits (631), Expect = 1e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y ++ Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLED 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|312148979|gb|ADQ29050.1| peptide chain release factor 1 [Borrelia burgdorferi N40] Length = 357 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSTTSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DTKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQ++N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQYKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL+ A Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLMIALQEQELKS 354 >gi|73540774|ref|YP_295294.1| peptide chain release factor 2 [Ralstonia eutropha JMP134] gi|72118187|gb|AAZ60450.1| bacterial peptide chain release factor 2 (bRF-2) [Ralstonia eutropha JMP134] Length = 357 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 108/339 (31%), Positives = 170/339 (50%), Gaps = 15/339 (4%) Query: 15 RFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + + + + L +E A+ ++S + +L + + Sbjct: 25 RLEEVNGLLEDPDVWNNPKRAQDLGKEKKALEGVVSVLGKLTDDLNGADELFELAKEEGD 84 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D + + K E+ + + + D + ++I+AG GG+EA + Sbjct: 85 DETLESIE-----TDVKGFEEIVAGMEFRRMFAGEMDQANAFIDIQAGAGGTEACDWASM 139 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L R Y +Y + +K EVL S+ D G K I G F ++ E+GVHR+ R Sbjct: 140 LLRQYLKYCERKGFKAEVLEESEGDVAGIKSATIKIEGEYAFGYLRTETGVHRLVRKSPF 199 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++SG HTS ++V V PE +V++ D+R+DT RASG+GGQH+N TDSAVRITHIP Sbjct: 200 DSSGGRHTSFSSVFVYPEVDDSFEVEVNPADLRVDTYRASGAGGQHINKTDSAVRITHIP 259 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V +++SQH+NR AM +L++RLY+ E ++ E K +G G +IR Sbjct: 260 TGIVVQCQNDRSQHRNRAEAMSMLKSRLYEHEMRKRQAEADKLEAGKTDVGWG---HQIR 316 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y Q RI D R N+ + + VL G +D I L Sbjct: 317 SYVLDQSRIKDLRTNVEMSNTQKVLDGDLDPFIEASLKQ 355 >gi|33866628|ref|NP_898187.1| peptide chain release factor 1 [Synechococcus sp. WH 8102] gi|46576726|sp|Q7U4H2|RF1_SYNPX RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33633406|emb|CAE08611.1| peptide chain release factor RF-1 [Synechococcus sp. WH 8102] Length = 365 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 138/354 (38%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ K+ E A + P++ + E++ Sbjct: 9 RLEAATASFRNLERQLADPDVAADPTRLEKIARERARLEPLVLDFEELQVLEGEQKQSRE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D+ + +LAQ ++ ++ + EL ++ LLP+D D++S +LEIRAG GG E Sbjct: 69 LLKECRGDAAMEELAQDDLASLNRRHAELTEKLTVALLPRDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY+ W V+ +SS++ D GG++E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYSQKLGWNVQPISSNEADLGGFRELILSVKGDSVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + +D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVQLDPKDLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E+SQ QNR RA+++LRA+L + E++ A S++R+ Q+GSGDRS Sbjct: 249 DLLHKPSGIRVFCTQERSQLQNRERALEILRAKLLEQEQREAAARESSDRRAQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ L+ VL G ++D+I + Q + + + S+ Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFS-LDPVLDGQLEDLIGACIAEEQRQKLEALSQ 361 >gi|297379299|gb|ADI34186.1| peptide chain release factor 1 [Helicobacter pylori v225d] Length = 352 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y ++ Sbjct: 1 MSILAEKLSSILKRYDELTALLSNAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLED 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|15594541|ref|NP_212330.1| peptide chain release factor 1 [Borrelia burgdorferi B31] gi|216264551|ref|ZP_03436543.1| peptide chain release factor 1 [Borrelia burgdorferi 156a] gi|218249543|ref|YP_002374724.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7] gi|221217544|ref|ZP_03589014.1| peptide chain release factor 1 [Borrelia burgdorferi 72a] gi|223889241|ref|ZP_03623829.1| peptide chain release factor 1 [Borrelia burgdorferi 64b] gi|224532854|ref|ZP_03673469.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23] gi|224534094|ref|ZP_03674677.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a] gi|225549805|ref|ZP_03770769.1| peptide chain release factor 1 [Borrelia burgdorferi 118a] gi|226321514|ref|ZP_03797040.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26] gi|3914620|sp|O51214|RF1_BORBU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226739097|sp|B7J1C9|RF1_BORBZ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|2688096|gb|AAC66592.1| peptide chain release factor 1 (prfA) [Borrelia burgdorferi B31] gi|215981024|gb|EEC21831.1| peptide chain release factor 1 [Borrelia burgdorferi 156a] gi|218164731|gb|ACK74792.1| peptide chain release factor 1 [Borrelia burgdorferi ZS7] gi|221192607|gb|EEE18824.1| peptide chain release factor 1 [Borrelia burgdorferi 72a] gi|223885274|gb|EEF56376.1| peptide chain release factor 1 [Borrelia burgdorferi 64b] gi|224512243|gb|EEF82629.1| peptide chain release factor 1 [Borrelia burgdorferi WI91-23] gi|224512793|gb|EEF83161.1| peptide chain release factor 1 [Borrelia burgdorferi CA-11.2a] gi|225369613|gb|EEG99062.1| peptide chain release factor 1 [Borrelia burgdorferi 118a] gi|226232703|gb|EEH31456.1| peptide chain release factor 1 [Borrelia burgdorferi Bol26] gi|312148526|gb|ADQ31185.1| peptide chain release factor 1 [Borrelia burgdorferi JD1] Length = 357 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DTKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL+ A Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLMIALQEQELKS 354 >gi|317130277|ref|YP_004096559.1| hypothetical protein Bcell_3587 [Bacillus cellulosilyticus DSM 2522] gi|315475225|gb|ADU31828.1| hypothetical protein Bcell_3587 [Bacillus cellulosilyticus DSM 2522] Length = 366 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 179/346 (51%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + + R AE+E MS+ D + + + ++ + ++++ + Sbjct: 25 DLEEKETRIAELEELMSDPSFWDNQDNAQKIISENNALKEMVDTYRELEAEQEDLDVSYE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + DL +K LL + D + ILE+ G GG+E Sbjct: 85 LVKEEGDEELAADLHAGIKELGKKFND-----FELQLLLSEPYDKNNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R+A + +KVE L D+ G K + ISG + +K E GVHR Sbjct: 140 SQDWASMLLRMYQRWADDKGFKVETLDYLPGDEAGVKSVTLMISGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS + V+PE ++++I + ++IDT RASG+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSCEVMPELDDNVEIEISPDQLKIDTYRASGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH+PT +V SE+SQ +NR +AMK+L+A+L+ +E +R E R + IG G Sbjct: 260 VRITHLPTNTVVTCQSERSQIKNREQAMKMLKAKLFQLEIERQQQELDEIRGEQSDIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + V+ G +D I+ L Sbjct: 320 ---SQIRSYVFHPYNMVKDHRTNYETGNTQSVMDGELDPFIDAYLR 362 >gi|189218443|ref|YP_001939084.1| protein chain release factor A [Methylacidiphilum infernorum V4] gi|189185301|gb|ACD82486.1| Protein chain release factor A [Methylacidiphilum infernorum V4] Length = 377 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 146/360 (40%), Positives = 216/360 (60%), Gaps = 5/360 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 + I ++ +F +++ +S+ K + +E+ + + Q + + Sbjct: 1 MQLDRYIEKIQKKFDKLQTELSKEELYTDPSKTIEIAKEHTRLKETLDLYGELKQIENAK 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ + Q K + L P++ K+ I+EIRAG Sbjct: 61 SSVESLAKETVDPEIQELAQQEITRLSNKIQELTMAILGSLFPPEENKSSKNVIIEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DL+RMY +YA + WK E+L + ++ GG KE++ T+ G+ F +MKFE Sbjct: 121 TGGEEAALFAADLYRMYSKYAEKKGWKQELLHFNPSELGGLKEVIFTVQGKEAFRKMKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVPATE+ GR+HTS ATVAVL E E+++DI ED+RI+ RASG GGQ VNT Sbjct: 181 SGVHRVQRVPATESQGRIHTSTATVAVLLETEEVELDIKAEDLRIEVCRASGPGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAV++ HIP+GIMV E+SQ +N+ +A+K+L+ARL +++ A +R+ RK IG Sbjct: 241 TDSAVQVFHIPSGIMVRCQDERSQIKNKEKALKILKARLLARKQEEEAQKRAQERKSMIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG-SASE 357 SG+R+E+IRTYNF QGR+TDHRI +TLY L+ + G ID I++ L+ I +E Sbjct: 301 SGERTEKIRTYNFPQGRVTDHRIPITLYNLQSFMDGDIDPIVDQLMQKEMELRIARELAE 360 >gi|121608524|ref|YP_996331.1| peptide chain release factor 1 [Verminephrobacter eiseniae EF01-2] gi|166223615|sp|A1WI56|RF1_VEREI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|121553164|gb|ABM57313.1| bacterial peptide chain release factor 1 (bRF-1) [Verminephrobacter eiseniae EF01-2] Length = 359 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 165/361 (45%), Positives = 231/361 (63%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M Q+ R E++ ++ + Y + E+A ++ + + + Y Q++ Sbjct: 1 MKPFLRSQLARHAQRLGELDFLLARPDIMADMVQYRSIAREHAEVTQVAGRYARYLQREA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D + +LAQ E+ + + E+R+LE+E+ LLLPK+ DD ++ +EIR Sbjct: 61 DLGAARELLA----DPGMAELAQEEIDSSQTELRQLEDELQRLLLPKEPDDARNAFVEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG E+ALF GDL RMY RYAA R W+V+VLS + + GGYKEIV I G V+ +K Sbjct: 117 AGTGGDESALFAGDLTRMYTRYAARRGWQVQVLSENPAELGGYKEIVLRIDGEQVYGTLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVPATE GRVHTSA TVAV+PE ++RIDT RASG+GGQH Sbjct: 177 FESGGHRVQRVPATETQGRVHTSACTVAVMPEPDPARAIALNPAELRIDTFRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N TDSAVR+ H+PTGI+ +SQH N+ RA++VL+ARL + ER A + +A RK Sbjct: 237 INKTDSAVRVVHLPTGIVAECQDGRSQHGNKARALQVLQARLQEKERSERAAKEAALRKG 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IGSG+RS+RIRTYNF QGR+TDHRI LTLY+L+ +L G +D ++ L A +A+ + Sbjct: 297 LIGSGERSDRIRTYNFPQGRLTDHRIQLTLYQLQQLLDGELDPMLQALGHAREAEQLQEL 356 Query: 356 S 356 Sbjct: 357 E 357 >gi|15827565|ref|NP_301828.1| peptide chain release factor 1 [Mycobacterium leprae TN] gi|221230042|ref|YP_002503458.1| peptide chain release factor 1 [Mycobacterium leprae Br4923] gi|13432207|sp|P45833|RF1_MYCLE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790892|sp|B8ZR31|RF1_MYCLB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|13093115|emb|CAC31515.1| peptide chain release factor 1 [Mycobacterium leprae] gi|219933149|emb|CAR71229.1| peptide chain release factor 1 [Mycobacterium leprae Br4923] Length = 361 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 150/364 (41%), Positives = 203/364 (55%), Gaps = 21/364 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L AE+EL +++ + K +A ++PI++ + + Q Sbjct: 4 PVQSIDVLLIEHAELELALADPELHSNPAEARKAGRRFARLAPIVATHRKLISARDDLQT 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + S ++ E I EL ++ +L P D +LE+++G G Sbjct: 64 ARELAAGDESFADEIAEL-------ESRIAELTTQLTDMLAPHDPHGPDDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG---------RGV 172 G E+ALF DL RMY RYA W V VL + +D GGYK+ IS GV Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLDETTSDLGGYKDATLAISHKGASDGDAVDGV 176 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 +SRMKFE GVHRVQRVP TE+ GRVHTSAA V V PE EI +V I D+RID R+SG Sbjct: 177 WSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEIGEVHIDESDLRIDVYRSSG 236 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 GGQ VNTTDSAVRITH+PTG++V +E+SQ QN+ RA++VL ARL + ++ S Sbjct: 237 KGGQGVNTTDSAVRITHLPTGVVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALANAS 296 Query: 291 ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 A+R QI + DRSERIRTYNF + RITDHRI + L+ VL G +D + + L A + Sbjct: 297 ADRASQIRTVDRSERIRTYNFPENRITDHRIGYKAHNLDQVLDGDLDALFDALSAADKQS 356 Query: 351 MIGS 354 + Sbjct: 357 RLQQ 360 >gi|15608439|ref|NP_215815.1| peptide chain release factor 1 [Mycobacterium tuberculosis H37Rv] gi|15840749|ref|NP_335786.1| peptide chain release factor 1 [Mycobacterium tuberculosis CDC1551] gi|31792492|ref|NP_854985.1| peptide chain release factor 1 [Mycobacterium bovis AF2122/97] gi|121637228|ref|YP_977451.1| peptide chain release factor 1 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148661087|ref|YP_001282610.1| peptide chain release factor 1 [Mycobacterium tuberculosis H37Ra] gi|148822517|ref|YP_001287271.1| peptide chain release factor 1 [Mycobacterium tuberculosis F11] gi|167969626|ref|ZP_02551903.1| peptide chain release factor 1 [Mycobacterium tuberculosis H37Ra] gi|215403141|ref|ZP_03415322.1| peptide chain release factor 1 [Mycobacterium tuberculosis 02_1987] gi|215410938|ref|ZP_03419746.1| peptide chain release factor 1 [Mycobacterium tuberculosis 94_M4241A] gi|215426621|ref|ZP_03424540.1| peptide chain release factor 1 [Mycobacterium tuberculosis T92] gi|215430186|ref|ZP_03428105.1| peptide chain release factor 1 [Mycobacterium tuberculosis EAS054] gi|215445477|ref|ZP_03432229.1| peptide chain release factor 1 [Mycobacterium tuberculosis T85] gi|218753007|ref|ZP_03531803.1| peptide chain release factor 1 [Mycobacterium tuberculosis GM 1503] gi|219557200|ref|ZP_03536276.1| peptide chain release factor 1 [Mycobacterium tuberculosis T17] gi|224989703|ref|YP_002644390.1| peptide chain release factor 1 [Mycobacterium bovis BCG str. Tokyo 172] gi|253799655|ref|YP_003032656.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis KZN 1435] gi|254231557|ref|ZP_04924884.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis C] gi|254364196|ref|ZP_04980242.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis str. Haarlem] gi|254550307|ref|ZP_05140754.1| peptide chain release factor 1 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260186238|ref|ZP_05763712.1| peptide chain release factor 1 [Mycobacterium tuberculosis CPHL_A] gi|260200352|ref|ZP_05767843.1| peptide chain release factor 1 [Mycobacterium tuberculosis T46] gi|260204557|ref|ZP_05772048.1| peptide chain release factor 1 [Mycobacterium tuberculosis K85] gi|289442738|ref|ZP_06432482.1| peptide chain release factor 1 [Mycobacterium tuberculosis T46] gi|289446894|ref|ZP_06436638.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis CPHL_A] gi|289554911|ref|ZP_06444121.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis KZN 605] gi|289569311|ref|ZP_06449538.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis T17] gi|289573962|ref|ZP_06454189.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis K85] gi|289745045|ref|ZP_06504423.1| peptide chain release factor 1 [Mycobacterium tuberculosis 02_1987] gi|289749853|ref|ZP_06509231.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis T92] gi|289753376|ref|ZP_06512754.1| peptide chain release factor 1 [Mycobacterium tuberculosis EAS054] gi|289757399|ref|ZP_06516777.1| peptide chain release factor 1 [Mycobacterium tuberculosis T85] gi|289761454|ref|ZP_06520832.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis GM 1503] gi|297633851|ref|ZP_06951631.1| peptide chain release factor 1 [Mycobacterium tuberculosis KZN 4207] gi|297730838|ref|ZP_06959956.1| peptide chain release factor 1 [Mycobacterium tuberculosis KZN R506] gi|298524803|ref|ZP_07012212.1| peptide chain release factor 1 [Mycobacterium tuberculosis 94_M4241A] gi|306775471|ref|ZP_07413808.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu001] gi|306781618|ref|ZP_07419955.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu002] gi|306784023|ref|ZP_07422345.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu003] gi|306788386|ref|ZP_07426708.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu004] gi|306792713|ref|ZP_07431015.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu005] gi|306797119|ref|ZP_07435421.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu006] gi|306802999|ref|ZP_07439667.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu008] gi|306807189|ref|ZP_07443857.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu007] gi|306967388|ref|ZP_07480049.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu009] gi|306971580|ref|ZP_07484241.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu010] gi|307079294|ref|ZP_07488464.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu011] gi|307083863|ref|ZP_07492976.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu012] gi|313658170|ref|ZP_07815050.1| peptide chain release factor 1 [Mycobacterium tuberculosis KZN V2475] gi|54039048|sp|P66017|RF1_MYCBO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|54041593|sp|P66016|RF1_MYCTU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223571|sp|A1KI87|RF1_MYCBP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223574|sp|A5U1Z8|RF1_MYCTA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|254790891|sp|C1AMU3|RF1_MYCBT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|1322423|emb|CAA97732.1| PROBABLE PEPTIDE CHAIN RELEASE FACTOR 1 PRFA (RF-1) [Mycobacterium tuberculosis H37Rv] gi|13880941|gb|AAK45600.1| peptide chain release factor 1 [Mycobacterium tuberculosis CDC1551] gi|31618081|emb|CAD94192.1| PROBABLE PEPTIDE CHAIN RELEASE FACTOR 1 PRFA (RF-1) [Mycobacterium bovis AF2122/97] gi|121492875|emb|CAL71346.1| Probable peptide chain release factor 1 prfA [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600616|gb|EAY59626.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis C] gi|134149710|gb|EBA41755.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis str. Haarlem] gi|148505239|gb|ABQ73048.1| peptide chain release factor 1 [Mycobacterium tuberculosis H37Ra] gi|148721044|gb|ABR05669.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis F11] gi|224772816|dbj|BAH25622.1| peptide chain release factor 1 [Mycobacterium bovis BCG str. Tokyo 172] gi|253321158|gb|ACT25761.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis KZN 1435] gi|289415657|gb|EFD12897.1| peptide chain release factor 1 [Mycobacterium tuberculosis T46] gi|289419852|gb|EFD17053.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis CPHL_A] gi|289439543|gb|EFD22036.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis KZN 605] gi|289538393|gb|EFD42971.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis K85] gi|289543065|gb|EFD46713.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis T17] gi|289685573|gb|EFD53061.1| peptide chain release factor 1 [Mycobacterium tuberculosis 02_1987] gi|289690440|gb|EFD57869.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis T92] gi|289693963|gb|EFD61392.1| peptide chain release factor 1 [Mycobacterium tuberculosis EAS054] gi|289708960|gb|EFD72976.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis GM 1503] gi|289712963|gb|EFD76975.1| peptide chain release factor 1 [Mycobacterium tuberculosis T85] gi|298494597|gb|EFI29891.1| peptide chain release factor 1 [Mycobacterium tuberculosis 94_M4241A] gi|308216019|gb|EFO75418.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu001] gi|308325580|gb|EFP14431.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu002] gi|308331256|gb|EFP20107.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu003] gi|308335072|gb|EFP23923.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu004] gi|308338880|gb|EFP27731.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu005] gi|308342494|gb|EFP31345.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu006] gi|308346428|gb|EFP35279.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu007] gi|308350299|gb|EFP39150.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu008] gi|308355000|gb|EFP43851.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu009] gi|308358948|gb|EFP47799.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu010] gi|308362830|gb|EFP51681.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu011] gi|308366496|gb|EFP55347.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis SUMu012] gi|323720256|gb|EGB29355.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis CDC1551A] gi|326902921|gb|EGE49854.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis W-148] gi|328459401|gb|AEB04824.1| peptide chain release factor 1 prfA [Mycobacterium tuberculosis KZN 4207] Length = 357 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 210/360 (58%), Gaps = 17/360 (4%) Query: 5 SHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L AE+EL +++ + ++ +A ++PI++ + + + Sbjct: 4 PVQTIDVLLAEHAELELALADPALHSNPAEARRVGRRFARLAPIVATHRKLTSARDDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ S EV A+E + EL+ ++ +L P+D D +LE+++G G Sbjct: 64 ARELVASDES-------FAAEVAALEARVGELDAQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRM 176 G E+ALF DL RMY RYA W V VL + +D GGYK+ I+ GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWAVTVLDETTSDLGGYKDATLAIASKADTPDGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E+ V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGQVQIDESDLRIDVFRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +E+SQ QN+ RA++VL ARL + ++ + SA+R Sbjct: 237 GVNTTDSAVRITHLPTGIVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALADASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 QI + DRSERIRTYNF + RITDHRI + L+ VL G +D + + L A + + Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDQVLDGDLDALFDALSAADKQSRLRQ 356 >gi|210634612|ref|ZP_03298189.1| hypothetical protein COLSTE_02111 [Collinsella stercoris DSM 13279] gi|210158740|gb|EEA89711.1| hypothetical protein COLSTE_02111 [Collinsella stercoris DSM 13279] Length = 355 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 151/342 (44%), Positives = 218/342 (63%), Gaps = 7/342 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + F E+E ++S+ + + +L +EYA + ++ Y + + Sbjct: 1 MRDKLEKIIIAFEELEKKLSDPSIASDIKEFTRLNKEYAHQTDLVKAAREYLGALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +D++ +++ Q+E+ E ++ +LE +I +L+P D D+K I+EIR+ G Sbjct: 61 AKEMLREA-TDADEKEMLQMEISENEAKLPQLEEDIKIMLIPGDPMDEKDTIVEIRSAAG 119 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDLF+MY+R+ +KWK+EVL SS +D GG+K I ++G V+S MK+ESG Sbjct: 120 GDEAAIFAGDLFKMYQRFIESKKWKMEVLDSSPSDAGGFKSIEFKVTGDRVYSVMKYESG 179 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EIDV I D+RIDT ASG GGQ VNTT Sbjct: 180 VHRVQRVPKTESQGRIQTSTATVAVLPEADEIDVQINQSDLRIDTYCASGPGGQCVNTTY 239 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E A R QIG G Sbjct: 240 SAVRITHLPTNTVVQSQEQRSQIQNREVCMQMLRARLYEMELEKQQAELGAERSAQIGHG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIIN 341 +RSE+IRTYN Q R+TDHRI VL G + +I Sbjct: 300 NRSEKIRTYNQPQDRVTDHRIGFNSTY-NGVLLGDQLSSVIE 340 >gi|283782510|ref|YP_003373265.1| peptide chain release factor 1 [Pirellula staleyi DSM 6068] gi|283440963|gb|ADB19405.1| peptide chain release factor 1 [Pirellula staleyi DSM 6068] Length = 358 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 223/356 (62%), Gaps = 6/356 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQD 61 + RF E+E M++ + K+ E+ +++ + K + Q E Sbjct: 1 MRDMLEQKLARFEELERMMTDPSLMSDSSKMGNVAREHGSLAKLAVKYRRFKQLNDEVAA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + SD + R++A+ E+ + E + +E+ + + + C++EIRAG G Sbjct: 61 LVEMSK--VSDPDEREMAEAEIPNVRAERERIWSEVLDMTVGGEDAQRSRCVMEIRAGVG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+E ALF DL++MY+R+ + WKVE++ +S D GG+KE++ G GVF +++ESG Sbjct: 119 GAEGALFAQDLYQMYKRFGEKKGWKVELMEASPTDMGGFKEVILGFEGEGVFRELQYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TEA GRVHTSAATVAVLPE +++V+I ++ R+D ASG GGQHVN T+ Sbjct: 179 GHRVQRVPETEAKGRVHTSAATVAVLPEPEDVEVNIKPDEYRLDKFCASGPGGQHVNKTE 238 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH TGI+V+ EKSQH+N +A+++L++RLYD R+R +R+A RK +GSG Sbjct: 239 SAVRLTHYETGIVVSMQDEKSQHKNLAKALRILKSRLYDFYRQREQAKRAAERKSLVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF + R TDHRI LTLYKL+ ++ G + +++ L+ + ++ Sbjct: 299 DRSERIRTYNFPENRCTDHRIGLTLYKLDQIINGDLQPVLDGLIEHDRNELRDQMG 354 >gi|219685818|ref|ZP_03540627.1| peptide chain release factor 1 [Borrelia garinii Far04] gi|219672651|gb|EED29681.1| peptide chain release factor 1 [Borrelia garinii Far04] Length = 357 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ + +E ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MFLEKLNSATTKIKSLEEKLQDVNLIKNQKKYSKIIKEYTHLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEIV I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDQLLDPLTIELQEQKLKS 354 >gi|258652312|ref|YP_003201468.1| peptide chain release factor 1 [Nakamurella multipartita DSM 44233] gi|258555537|gb|ACV78479.1| peptide chain release factor 1 [Nakamurella multipartita DSM 44233] Length = 361 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 145/358 (40%), Positives = 211/358 (58%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + ++++++S+ KL YA ++PI++ + + Q + Sbjct: 9 VDALVAEYEDLQVKLSDPAVHADQAVSRKLGRRYAELTPIVTTARDLAATRGDLQAAQEL 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E + + ELE ++ LL P+D DD K ++E++AG GG E+ Sbjct: 69 GAEDAGFAEEA-------RTLAGRVDELEQRLSELLAPRDPDDGKDVLVEVKAGEGGEES 121 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY RYA R WK EVLS++++D GGYK++ + V++R+KFE Sbjct: 122 ALFAGDLLRMYLRYAERRGWKTEVLSATESDLGGYKDVTVAVKSPAATPDGVWARLKFEG 181 Query: 181 GVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V DV+I D+RID R+SG GGQ VNT Sbjct: 182 GVHRVQRVPVTESQGRVHTSAAGVFVAPEVEDVNDVEIADADLRIDVFRSSGPGGQSVNT 241 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +EKSQ QN+ +AM++LRAR+ R + R+ Q+ Sbjct: 242 TDSAVRITHLPTGIVVSCQNEKSQLQNKEQAMRILRARMLAAARATADAAAADARRSQVR 301 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSER+RTYN+ + RI DHR+ Y L+ VL G +D +++ L A +A+ + A Sbjct: 302 TVDRSERVRTYNYPENRIADHRVGYKAYNLDAVLDGDLDAVLDALSAADRAERLAGAG 359 >gi|194364499|ref|YP_002027109.1| peptide chain release factor 1 [Stenotrophomonas maltophilia R551-3] gi|238693440|sp|B4SKS8|RF1_STRM5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|194347303|gb|ACF50426.1| peptide chain release factor 1 [Stenotrophomonas maltophilia R551-3] Length = 360 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 169/337 (50%), Positives = 232/337 (68%), Gaps = 10/337 (2%) Query: 26 SPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 V + L+ E+A + PI + ++ + K + + D ++R+LA E Sbjct: 26 PDVVADNTRFRDLSREFAQLEPIATALADETRAKADLAAAEGMRA----DPDLRELADEE 81 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A + ++ELE E+ LL+P+D DD + LE+RAGTGG EAA+F GDLFRMY RYA Sbjct: 82 IAAAQARLQELEQELALLLVPRDPRDDGNLFLEVRAGTGGDEAAIFAGDLFRMYARYAER 141 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WKVE+ S + + GGYKE+VA + GRG FSR+KFESG HRVQRVPATE+ GR+HTSAA Sbjct: 142 QGWKVEIESDNPGEHGGYKEVVARVVGRGAFSRLKFESGTHRVQRVPATESQGRIHTSAA 201 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 TVA++PEA E+D + D+R+DT R+SG+GGQHVN T+SA+RITH+PTG++V +E+ Sbjct: 202 TVAIIPEADEVDDIVINPADLRVDTFRSSGAGGQHVNKTESAIRITHVPTGVVVECQTER 261 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQH NR +AMK L+A+L D ER+R ++ +R+LQ+GSGDRS+RIRTYNF QGRITDHR Sbjct: 262 SQHANRDKAMKRLKAQLLDAERQRQDAAQAESRRLQVGSGDRSQRIRTYNFPQGRITDHR 321 Query: 321 I-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + LTLY L +L G +D ++ L HQ + S Sbjct: 322 VEGLTLYDLPNILAGDLDPLLQRLSHEHQVDALAQLS 358 >gi|225548553|ref|ZP_03769601.1| peptide chain release factor 1 [Borrelia burgdorferi 94a] gi|225370816|gb|EEH00251.1| peptide chain release factor 1 [Borrelia burgdorferi 94a] Length = 357 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIIKEYTCLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DTKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL+ A Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLMIALQEQELKS 354 >gi|168056816|ref|XP_001780414.1| predicted protein [Physcomitrella patens subsp. patens] gi|162668174|gb|EDQ54787.1| predicted protein [Physcomitrella patens subsp. patens] Length = 362 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 167/358 (46%), Positives = 242/358 (67%), Gaps = 3/358 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M+ + + + +++R + + +SES + D I+L++E + + +++ I+ ++E Sbjct: 1 MLSIVERGMLAIEHRHSRLNQALSESAACPDEIIRLSKELSKLEDLMACITSLKNTRKEI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L +I + D +++ A E+ ++ E + L+LPKD D + CILE+RAG Sbjct: 61 EGLKMLIEESAEDEDMKQAAAEELRSVSNLETEDLQRMLLLMLPKDEADSRGCILEVRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+FRMYERYA + W EVLS + + GYKE A+I+G GV+ ++KFE Sbjct: 121 TGGDEASLFASDIFRMYERYAQKKLWSFEVLSITQTNSKGYKEASASITGDGVYGKLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE SGRVHTSAA+VAVLP+A E+DV + ED+RIDT RA G+GGQH NT Sbjct: 181 SGVHRVQRVPVTEKSGRVHTSAASVAVLPQADEVDVQMRNEDLRIDTYRAGGAGGQHANT 240 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH+PTGI++ E+SQH NR +++K+LRA+L++ ER + A RS R QIG Sbjct: 241 TSSAVRVTHLPTGIVIAIQDERSQHMNRAKSLKLLRAKLFERERMQQAMARSTLRLEQIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 SGDRSERIRTYNF QGR+TDHR+N+T + + ++QG +D I+ L + + S Sbjct: 301 SGDRSERIRTYNFPQGRVTDHRVNITQHSIVQIMQGEGLDGFIDALTMKQEIAALASL 358 >gi|288922982|ref|ZP_06417139.1| peptide chain release factor 1 [Frankia sp. EUN1f] gi|288345658|gb|EFC80030.1| peptide chain release factor 1 [Frankia sp. EUN1f] Length = 356 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 150/358 (41%), Positives = 220/358 (61%), Gaps = 18/358 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + A+IE R+++ + +L+ YA ++ + + + + + + Sbjct: 5 LASMIAEHADIEKRLADPAIHNDPSVARELSRRYAELATPVDLALRLESVEGDLEAAREL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 S + E EL + + L+P D DD + ILE++AG GG E+ Sbjct: 65 AEQDASFRDEITAL-------EDSRAELASRLRAYLVPTDPDDSRDAILEVKAGAGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY RYA R W+ E+L ++ +D GGY+++ + G+GVF R++F Sbjct: 118 ALFAGDLLRMYLRYAERRGWRTEILDANPSDLGGYRDVSVAVKARGSAGPGQGVFGRLRF 177 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHRVQRVP TE++GR+HTSAA V VLPEAA++DVD+ D+RID R+SG GGQ VN Sbjct: 178 EGGVHRVQRVPVTESAGRIHTSAAGVLVLPEAADVDVDVDPNDLRIDVFRSSGPGGQSVN 237 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTG++V +EKSQ QN+ AM++LR+RL R++ +E +A R Q+ Sbjct: 238 TTDSAVRITHLPTGVVVSCQNEKSQLQNKESAMRILRSRLLAAAREKAESEAAAARASQV 297 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + DRSE+IRTYNF + RI+DHRIN + LE VL G +D +++ L+ A QA + +A Sbjct: 298 RTVDRSEKIRTYNFPENRISDHRINYKAHNLEQVLDGDLDAVVDALIEADQAARMVAA 355 >gi|113954440|ref|YP_729638.1| peptide chain release factor 1 [Synechococcus sp. CC9311] gi|119361628|sp|Q0ID34|RF1_SYNS3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|113881791|gb|ABI46749.1| peptide chain release factor 1 [Synechococcus sp. CC9311] Length = 364 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 222/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + F +E ++++ +L E + + P++ + + + E+ + Sbjct: 9 RLEAASSSFHNLERQLADPDVAADPQRLETIARERSRLEPLVLDYTSLQKVEAEQVQAKS 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D+ + +LAQ E+ +++ +L I LLPKD D++S +LEIRAG GG E Sbjct: 69 LLKESRGDAAMEELAQQELQELDRHHADLIQRITLALLPKDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYER+++ R W V +S+++ D GGYKE++ ++ G VFS +KFE+GVHR Sbjct: 129 ACLWAGDLARMYERFSSRRGWSVTPVSANEADLGGYKELILSVKGDAVFSELKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP+TE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPSTESQGRVHTSTATVAVMPEADPVEVQIDPRDLDISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+LY+ + + R+ Q+G+GDRS Sbjct: 249 DLMHKPTGIRVFCTQERSQMQNRERALEILRAKLYERQLAEANASERSARRSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN R+TDHR+ L+ VL+G +DD+I+ + Q + SE Sbjct: 309 EKIRTYNAKDNRMTDHRLGRNFS-LDPVLEGQMDDVIDACIAEEQRGKLADLSE 361 >gi|109948016|ref|YP_665244.1| peptide chain release factor 1 [Helicobacter acinonychis str. Sheeba] gi|122973223|sp|Q17VT1|RF1_HELAH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|109715237|emb|CAK00245.1| peptide chain release factor RF-1 [Helicobacter acinonychis str. Sheeba] Length = 352 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + ++ KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVINDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSELETTIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE ++++ I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|119776010|ref|YP_928750.1| peptide chain release factor 2 [Shewanella amazonensis SB2B] gi|119768510|gb|ABM01081.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella amazonensis SB2B] Length = 364 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 170/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 27 DAKKERLEEVTRELESSDVWNNPERAQALGKERASLENVVKTIDTLDSGLEDVEGLLELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D A E+ + ++ + + D C L+I++G+GG+EA Sbjct: 87 VEEEDEGTFEDAK-----AELDELEKSLEDLEFRRMFSGPQDPSDCYLDIQSGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ SD D G K +G + ++ E+GVHR+ Sbjct: 142 DWAEMVLRMYLRWGEAHDFKPELIEVSDGDVAGIKSATIKFTGEYAYGWLRTETGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 202 RKSPFDSSGRRHTSFCSVFVYPEIDDDIEIDINPADLRIDVYRASGAGGQHVNRTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+LY++E ++ E+ + + K IG G Sbjct: 262 ITHLPTNTVVQCQNDRSQHKNKDTAMKQLKAKLYELELQKQNAEKQAAEDAKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 320 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLK 361 >gi|237750909|ref|ZP_04581389.1| peptide chain release factor 1 [Helicobacter bilis ATCC 43879] gi|229373354|gb|EEO23745.1| peptide chain release factor 1 [Helicobacter bilis ATCC 43879] Length = 356 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 165/359 (45%), Positives = 240/359 (66%), Gaps = 9/359 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQ 60 + ++ + R + +S ++ KL ++E + I++K Y + + Sbjct: 1 MLVDRLKPIIERNDALAAMLSTEEVINDIAKLTALSKEKSESDEIVAKAKEYLKVLDDIT 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D E+ +LA+ E+ +E + LE+EI LL+PKD +D K+ LEIRAGT Sbjct: 61 SNKALLE----DKELGELAKEELKELEIAQKNLEDEIKILLIPKDPNDKKNIYLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLF Y RYA ++WKVE++SSS+N GGYKE++A + G G +SR+K+E Sbjct: 117 GGDEAGIFVGDLFSAYCRYADSKQWKVEIISSSENSVGGYKEMIALVKGDGAYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE ++++I D++ID R+ G GGQ VNTT Sbjct: 177 GTHRVQRVPKTESQGRIHTSAITVAIMPEVDSLEININPNDLKIDVFRSGGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI V+ EKSQH+N+ +A+K+L+ARLY+ E + + +RK Q+GS Sbjct: 237 DSAVRITHIPTGISVSMQDEKSQHKNKDKALKILQARLYEAELEAQNAQNRESRKNQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYN+ Q R++DHRINLTLY LE ++ G +D +I+PL+ Q+ + +A+E Sbjct: 297 GDRSERIRTYNYPQNRMSDHRINLTLYSLEEIMLSGDLDKVIDPLIAHAQSLALSNANE 355 >gi|217034576|ref|ZP_03439984.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10] gi|216942931|gb|EEC22416.1| hypothetical protein HP9810_903g1 [Helicobacter pylori 98-10] Length = 352 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISVASKEYLSILEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|187251505|ref|YP_001875987.1| peptide chain release factor 1 [Elusimicrobium minutum Pei191] gi|186971665|gb|ACC98650.1| Peptide chain release factor [Elusimicrobium minutum Pei191] Length = 358 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 139/358 (38%), Positives = 213/358 (59%), Gaps = 5/358 (1%) Query: 3 FLSHKQIC--DLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 L +++ F +E MS + K ++ +A + PI+ K + ++ Sbjct: 1 MLREQKMDISKYLEEFKTLEAEMSSGNMPSEELQKKSKRHAFLRPIVEKGLELEAAQKGI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I D SD E+ +A E+ + +I LE E+ L++P D +D KS LE+R G Sbjct: 61 KDAQEIIKD-GSDKEMSQMAAEEMETLNAQIPVLEAELRVLVIPPDPNDSKSIYLELRPG 119 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG E+++F ++ R+Y+R+A + WK E+L + G K I G G +S ++ E Sbjct: 120 AGGDESSIFAAEMLRVYQRFADAKGWKTELLEYTPTGLKGCKYASMFIKGDGAYSWLRDE 179 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG HRVQRVP TE SGRVHTS TVA++PEA E+D+ I DI ++T RA G+GGQ+VN Sbjct: 180 SGTHRVQRVPDTETSGRVHTSTITVAIMPEAEEVDIQINPADIEMETCRAGGAGGQNVNK 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 ++AVR+ H PTG++V E+SQ NR++AM +LRA+LY +E ++ E RK Q+G Sbjct: 240 VETAVRLIHKPTGVVVSCREERSQGANRIKAMNMLRAKLYQMEEEKRNKEIYDTRKSQVG 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +GDRSE+IRTYNF Q R+TDHR + + + +++G I++I+N L T I + Sbjct: 300 TGDRSEKIRTYNFPQSRVTDHRTEKSYHNITEIMEGQIEEILNDLRTLRLEAKIKNLE 357 >gi|319760481|ref|YP_004124419.1| peptide chain release factor 1 [Candidatus Blochmannia vafer str. BVAF] gi|318039195|gb|ADV33745.1| peptide chain release factor 1 [Candidatus Blochmannia vafer str. BVAF] Length = 360 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 156/359 (43%), Positives = 237/359 (66%), Gaps = 9/359 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ L+ RF +++ + + + +++EYA ++ I++ + ++E Sbjct: 5 IIINKLTILQERFYKLKQLIEHPNHIQNNKDFHSISKEYAHLAHIVTYFEQWLNIQKEIL 64 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ +D ++ DLA E+ + LE +I LLLP D +D C +E+RAGT Sbjct: 65 HTKEIL----TDIDLHDLALDELKKLNIIENNLEKKIKILLLPTDPNDKYGCFIELRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+F G+LFRMY RYA ++W +E++ ++ + GGYKEI+A IS G ++++KFES Sbjct: 121 GGKEAAIFSGELFRMYTRYAETQRWNIEIIHATYGEYGGYKEIIAKISCNGAYNQLKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNT 239 G HRVQRVP TE+ GR+HTS TVAV+P+ +I +I D+RIDT R+SG+GGQHVNT Sbjct: 181 GGHRVQRVPYTESQGRIHTSTCTVAVIPKIPDIKLPNINPNDLRIDTFRSSGAGGQHVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSA+RITHIP+G+ V E+SQH+N+ +A+ +LR+RLY + KR E S R+ IG Sbjct: 241 TDSAIRITHIPSGLSVECQDERSQHKNKSKALSILRSRLYAMNIKRRKIEESNFRRNLIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SGDRS+RIRTYNF QGR+TDHRI+ T YKL V+ G + +I P++ +++K+I ++ Sbjct: 301 SGDRSDRIRTYNFQQGRVTDHRIDFTSYKLSDVMDGALGILIKPIICKYRSKLIDQLTQ 359 >gi|108562503|ref|YP_626819.1| peptide chain release factor 1 [Helicobacter pylori HPAG1] gi|119361549|sp|Q1CV77|RF1_HELPH RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|107836276|gb|ABF84145.1| peptide chain release factor RF-1 [Helicobacter pylori HPAG1] Length = 352 Score = 247 bits (630), Expect = 2e-63, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 246/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG+EA +FVGDLF+ Y RYA L+KW+VE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGNEAGIFVGDLFKAYCRYADLKKWRVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|217420389|ref|ZP_03451894.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 576] gi|226195477|ref|ZP_03791065.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei Pakistan 9] gi|237813009|ref|YP_002897460.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei MSHR346] gi|238561621|ref|ZP_00441741.2| peptide chain release factor 2, programmed frameshift [Burkholderia mallei GB8 horse 4] gi|242317384|ref|ZP_04816400.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1106b] gi|251767233|ref|ZP_04820018.1| peptide chain release factor 2, programmed frameshift [Burkholderia mallei PRL-20] gi|284159918|ref|YP_001059616.2| peptide chain release factor 2, programmed [Burkholderia pseudomallei 668] gi|217395801|gb|EEC35818.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 576] gi|225932437|gb|EEH28436.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei Pakistan 9] gi|237504244|gb|ACQ96562.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei MSHR346] gi|238524226|gb|EEP87660.1| peptide chain release factor 2, programmed frameshift [Burkholderia mallei GB8 horse 4] gi|242140623|gb|EES27025.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1106b] gi|243063468|gb|EES45654.1| peptide chain release factor 2, programmed frameshift [Burkholderia mallei PRL-20] gi|261825971|gb|ABN00993.2| peptide chain release factor 2, programmed frameshift [Burkholderia mallei NCTC 10229] gi|261835054|gb|ABO05438.2| peptide chain release factor 2, programmed frameshift [Burkholderia mallei NCTC 10247] gi|283775112|gb|ABN84239.2| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 668] Length = 367 Score = 247 bits (629), Expect = 2e-63, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE+ ++ + + L E ++ +++ ++ D ++ QDL + Sbjct: 30 DVKSERLAEVNKQLEDPNVWNDSKNAQALGREKKSLESVVTTLTALDNDLRDAQDLFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 HEEGDEETLVATE-----SDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGEYAYGYLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RL++ E ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFEAELRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 365 >gi|195941927|ref|ZP_03087309.1| peptide chain release factor 1 [Borrelia burgdorferi 80a] Length = 357 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 167/355 (47%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSTTSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DTKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLY+LE +QG +D +++PL+ A Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYRLEEFMQGELDPLLDPLMIALQEQELKS 354 >gi|90580579|ref|ZP_01236384.1| putative peptide chain release factor 2 [Vibrio angustum S14] gi|90438237|gb|EAS63423.1| putative peptide chain release factor 2 [Photobacterium angustum S14] Length = 353 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 111/343 (32%), Positives = 179/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + D L +E A++ ++ I + DQ ++ + L + Sbjct: 16 DAKKERLEEVNAELEQPDVWNEPDRAQALGKERASLEAVVETIDLLDQGVEDVEGLLELA 75 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ E+ ++ + + D C L+++AG+GG+EA Sbjct: 76 VEENDQETFDEIEPE-----LAELEAKLAKLEFRRMFAGDHDASDCYLDLQAGSGGTEAQ 130 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K E++ SD D G K + ISG + ++ E+GVHR+ Sbjct: 131 DWTSMMLRMYLRWADAKGFKTEIIEISDGDVAGLKSVTVRISGEYAYGWLRTETGVHRLV 190 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 191 RKSPFDSGGRRHTSFASAFVYPEIDDNIVIDINPSDLRIDVYRASGAGGQHVNTTESAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+L++ E ++ E+ S + K IG G Sbjct: 251 ITHLPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEYEMQKQNAEKQASEDTKSDIGWG-- 308 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 309 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 350 >gi|89072535|ref|ZP_01159107.1| putative peptide chain release factor 2 [Photobacterium sp. SKA34] gi|89051639|gb|EAR57092.1| putative peptide chain release factor 2 [Photobacterium sp. SKA34] Length = 353 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 179/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + D L +E +++ ++ I + DQ ++ + L + Sbjct: 16 DAKKERLEEVNAELEQPDVWNEPDRAQALGKERSSLEAVVETIDLLDQGVEDVEGLLELA 75 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ E+ ++ + + D C L+++AG+GG+EA Sbjct: 76 VEENDQETFDEIEPE-----LAELEAKLAKLEFRRMFAGDHDASDCYLDLQAGSGGTEAQ 130 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K E++ SD D G K + ISG + ++ E+GVHR+ Sbjct: 131 DWTSMMLRMYLRWADAKGFKTEIIEISDGDVAGLKSVTVRISGEYAYGWLRTETGVHRLV 190 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 191 RKSPFDSGGRRHTSFASAFVYPEIDDNIVIDINPSDLRIDVYRASGAGGQHVNTTESAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+L++ E ++ E+ S + K IG G Sbjct: 251 ITHLPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEYEMQKQNAEKQASEDTKSDIGWG-- 308 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 309 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 350 >gi|330469860|ref|YP_004407603.1| peptide chain release factor 1 [Verrucosispora maris AB-18-032] gi|328812831|gb|AEB47003.1| peptide chain release factor 1 [Verrucosispora maris AB-18-032] Length = 362 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 157/365 (43%), Positives = 214/365 (58%), Gaps = 18/365 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +++ L + +AE+E R+++ ++ YA + P + E + Sbjct: 1 MSSERLARLLDEYAELEKRLADPAIHADQGTARRVGRRYAELVP-------LHKAAAELE 53 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E + E+ LE + LL+P+D D K I+EI+AG Sbjct: 54 QARADLAAARELAAEDPSFAAEAETLAAELPALEERLAELLIPRDPHDAKDVIVEIKAGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVF 173 GG E+ALF GDL RMY RYA R W EV+ + D+D GG K++ I GV+ Sbjct: 114 GGEESALFAGDLLRMYTRYAERRGWLTEVIDAQDSDLGGVKDVSLAIKTKGVPEGGNGVW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+E GVHRVQRVP TE+ GR+HTSAA V VLPEA E+DV I ++RID R+SG G Sbjct: 174 SRLKWEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEEVDVTIDPNELRIDVFRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QNR +AM++LRARL +++ S Sbjct: 234 GQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILRARLLAAAQEQADAAASDA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 RK Q+ + DRSERIRTYNF Q RITDHRI T Y L+ L G +D +++ L A +A + Sbjct: 294 RKAQVRTVDRSERIRTYNFPQNRITDHRIGYTAYNLDLALAGELDGVLDALSEADRAARL 353 Query: 353 GSASE 357 E Sbjct: 354 AGDPE 358 >gi|261838950|gb|ACX98715.1| peptide chain release factor RF-1 [Helicobacter pylori 52] Length = 352 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISITSKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V + D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSLNPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|207091639|ref|ZP_03239426.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_AG0C1] Length = 352 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|308062940|gb|ADO04827.1| peptide chain release factor 1 [Helicobacter pylori Sat464] Length = 352 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYNELTALLSSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|15644707|ref|NP_206877.1| peptide chain release factor 1 [Helicobacter pylori 26695] gi|2500136|sp|P55998|RF1_HELPY RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|2313158|gb|AAD07148.1| peptide chain release factor RF-1 (prfA) [Helicobacter pylori 26695] Length = 352 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|328944392|ref|ZP_08241854.1| peptide chain release factor RF1 [Atopobium vaginae DSM 15829] gi|327490976|gb|EGF22753.1| peptide chain release factor RF1 [Atopobium vaginae DSM 15829] Length = 354 Score = 247 bits (629), Expect = 3e-63, Method: Composition-based stats. Identities = 163/357 (45%), Positives = 231/357 (64%), Gaps = 10/357 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +AE+E +M + V Y ++ +E+A ++++ Y Q + + Sbjct: 1 MRDKLEKLIAAYAELEKKMIDPAIVADPKEYARIAKEHARQGDLVARAREYLQALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D ++D R++ Q ++ A E+++ LE+EI +L+P D +D+K I+EIRAG G Sbjct: 61 AKEMLHDADADE--REMLQEDIAANEEKLPALEDEIKIMLIPGDPNDEKDTIVEIRAGVG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL++MYER+A + WKVE+LSSS ++ GG+K I + G V+S MK+ESG Sbjct: 119 GDEAAIFAGDLYKMYERFAESKNWKVEILSSSPSEVGGFKTIEFKMLGEKVYSVMKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EID+ I D+RIDT ASG GGQ VNTT Sbjct: 179 VHRVQRVPKTESQGRIQTSTATVAVLPEADEIDIQIDPTDLRIDTYCASGPGGQCVNTTY 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E+ A R QIG G Sbjct: 239 SAVRITHLPTNTVVQSQDQRSQIQNREVCMQMLRARLYEMELEKQQEEQGAARLSQIGHG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 +RSE+IRTYN Q R+TDHRI Y VL G + II L A +A+ + A Sbjct: 299 NRSEKIRTYNQPQDRVTDHRIGFNATYN--GVLLGDTLISIIEALAAAERAEKLAKA 353 >gi|53719890|ref|YP_108876.1| peptide chain release factor 2 [Burkholderia pseudomallei K96243] gi|53723794|ref|YP_103319.1| peptide chain release factor 2 [Burkholderia mallei ATCC 23344] gi|226830773|ref|YP_001066897.2| peptide chain release factor 2, programmed [Burkholderia pseudomallei 1106a] gi|254200276|ref|ZP_04906642.1| peptide chain release factor 2 [Burkholderia mallei FMH] gi|254209352|ref|ZP_04915698.1| peptide chain release factor 2 [Burkholderia mallei JHU] gi|81604734|sp|Q62J00|RF2_BURMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|81607820|sp|Q63SP0|RF2_BURPS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|229576668|sp|A3NX26|RF2_BURP0 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|52210304|emb|CAH36283.1| peptide chain release factor 2 [Burkholderia pseudomallei K96243] gi|52427217|gb|AAU47810.1| peptide chain release factor 2, programmed frameshift [Burkholderia mallei ATCC 23344] gi|147749872|gb|EDK56946.1| peptide chain release factor 2 [Burkholderia mallei FMH] gi|147750125|gb|EDK57196.1| peptide chain release factor 2 [Burkholderia mallei JHU] gi|213385360|gb|ABN92528.3| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1106a] Length = 367 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE+ ++ + + L E ++ +++ ++ D ++ QDL + Sbjct: 30 DVKSERLAEVNKQLEDPNVWNDSKNAQALGREKKSLESVVTTLTALDNDLRDAQDLFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 HEEGDEETLVATE-----SDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGEYAYGYLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RL++ E ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFEAELRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 365 >gi|318042535|ref|ZP_07974491.1| peptide chain release factor 1 [Synechococcus sp. CB0101] Length = 365 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 151/355 (42%), Positives = 223/355 (62%), Gaps = 5/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + F +E ++++ +L E A + P++ + +EQ Sbjct: 8 ERLDAARTTFDTLERQLADPDVAANPAQLEPIARERARLEPLVMGYDELQTLQGQEQQAR 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D ++ LAQ E+ + I LE ++ LLP+D D++S +LEIRAG GG Sbjct: 68 ELLRESRGDLDLEALAQEELAELATRISALEEQLTLALLPRDPRDERSVMLEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAAL+ GDL RMYERYA WKV+ +S+S+ + GGYKE++ I G GVFS++KFE+GVH Sbjct: 128 EAALWAGDLARMYERYAQSVGWKVQPVSASEAELGGYKELILAIKGDGVFSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATESQGRVHTSTATVAVMPEADPVEVQIDPGDLEISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RA+++LRA+LY+ E E + R Q+G+GDR Sbjct: 248 VDLLHKPTGIRVFCTQERSQLQNRERALEILRAKLYERELATANAEERSARLAQVGTGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SE+IRTYN+ R TDHR+ LE VLQG + ++I ++A Q + + +E Sbjct: 308 SEKIRTYNYKDNRTTDHRLGRNFS-LEPVLQGQLAELIGACVSADQRRQLEELAE 361 >gi|308061372|gb|ADO03260.1| peptide chain release factor 1 [Helicobacter pylori Cuz20] Length = 352 Score = 246 bits (628), Expect = 3e-63, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSTEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|225159115|ref|ZP_03725422.1| peptide chain release factor 1 [Opitutaceae bacterium TAV2] gi|224802321|gb|EEG20586.1| peptide chain release factor 1 [Opitutaceae bacterium TAV2] Length = 373 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 154/355 (43%), Positives = 223/355 (62%), Gaps = 4/355 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEE 59 S I + R E++ +M + T E+ ++ +++ + + + E Sbjct: 1 MQSLPDISLFQRRADELDAQMRSPTFYNDARAAAAVTREHQQVTQLLADHAAHRKTLAEI 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + +I D ++D ++R+LA+ E+ +E L + ++P + D + +LEIRAG Sbjct: 61 AEAQALIKDPSADPDLRELAEAELPELEARRERLFRTVLAGMIPPEPTDSRDTVLEIRAG 120 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF +L RMY RYA R W VE SS+++ GG++E+ I G+ V+ ++KFE Sbjct: 121 TGGEEAALFAAELARMYHRYAEDRGWTVEPTGSSESERGGFREVSFIIRGQDVYKQLKFE 180 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TEA+GR+HTS TVAVLPEA E+D+ I +D+ I RASG GGQ VNT Sbjct: 181 SGVHRVQRVPLTEANGRIHTSTVTVAVLPEAQEVDIRIDPQDLEITVQRASGPGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRI H PTG++V + +SQ +N+ AM VLRARL ++ A + +A R+ QIG Sbjct: 241 TDSAVRIVHKPTGMIVYCADGRSQQKNKASAMSVLRARLLQRKQDEEAAKYAAQRRGQIG 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +GDRSERIRTYNF Q R+TDHRI LTLY L V++G +++++ PL A + + Sbjct: 301 TGDRSERIRTYNFPQNRLTDHRIGLTLYSLTQVMEGALNEVVQPLQKAEFEEKLA 355 >gi|34557214|ref|NP_907029.1| peptide chain release factor 1 [Wolinella succinogenes DSM 1740] gi|46576699|sp|Q7M9M4|RF1_WOLSU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|34482930|emb|CAE09929.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Wolinella succinogenes] Length = 355 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 175/359 (48%), Positives = 247/359 (68%), Gaps = 9/359 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ RF EI + + +L++E +A+ ++ K Y Q + Q Sbjct: 1 MLISKLTPFIERFEEITRLLGTMEVISDIKRMTELSKEQSALEALVLKAKEYLQTHRSIQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D E+ DLA+ E +E+ + LE+EI LL+PKD +DDK+ LEIRAGT Sbjct: 61 ENRALFE----DKELGDLAKEENKLLEESLESLESEIKLLLIPKDPNDDKNIYLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLF+ Y RYA L+ WKVE++SSS+N GGYKE++A I G GV+SR+K+E Sbjct: 117 GGDEAGIFVGDLFKSYCRYADLKGWKVEIISSSENSVGGYKEVIALIKGNGVYSRLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE +++V+I D++ID R+ G GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVNINPNDLKIDVFRSGGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI V+ EKSQH+N+ +A+K+L+ARLY+ E + +E SA RKLQ+GS Sbjct: 237 DSAVRITHLPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAKLSENSAARKLQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYN+ Q R+TDHRI LTLY LE ++ G D +++P++ +QA+M+ + + Sbjct: 297 GDRSERIRTYNYPQNRLTDHRIGLTLYSLEEIMLSGNFDQVVDPIVAHYQAEMMKESED 355 >gi|33241132|ref|NP_876074.1| peptide chain release factor 1 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81663962|sp|Q7V9Z0|RF1_PROMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33238662|gb|AAQ00727.1| Protein chain release factor A [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 365 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 143/353 (40%), Positives = 220/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +EL++++ KL E A + P++ E ++ Sbjct: 9 RLETASATFNNLELQLADPDVASDPKKLETIARERARLEPLVLDYKELQAIDLEYKEAKE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD E+ LAQ E++ +E+ ++L N + LLPKD D++S +LEIRAG GG E Sbjct: 69 LLRQSKSDKEMEALAQEELIRLEELEKDLVNRLTLALLPKDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+++ D GG++E++ ++ G+ VFS++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGLKVGWVVKAMSATEADLGGFRELIISVKGKAVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKLEPTDLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+L + E + + + R Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLLEREIEEANAKERSARLAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R TDHR+ + + LE VL+G +DD+I + Q + Sbjct: 309 EKIRTYNYKDNRTTDHRLGVN-FPLETVLEGELDDLIGACIAEEQRLKMEKLG 360 >gi|162447071|ref|YP_001620203.1| peptide chain release factor RF-1 [Acholeplasma laidlawii PG-8A] gi|226739094|sp|A9NEP7|RF1_ACHLI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|161985178|gb|ABX80827.1| peptide chain release factor RF-1 [Acholeplasma laidlawii PG-8A] Length = 354 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 145/352 (41%), Positives = 220/352 (62%), Gaps = 3/352 (0%) Query: 7 KQICDLKNRFAEIELRMSES-PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ ++ + ++ +++ V KL +E ++ + Y K++ +D Sbjct: 3 ERLEVMRKTYYALQEKLASGISDVKEITKLMKELKSLEDAVVAYEKYLSLKEQLKD-LEE 61 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + ++S + ++A+ E ++E +I LE + LLLPKD DDDK+ I+EI+ GG E Sbjct: 62 LLELETESSVLEMAKAEEKSLESDIENLEESLRILLLPKDPDDDKNVIIEIKGAAGGDEG 121 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDLF+MY +YA WKV +++++ GG+ I ISG FS +K ESGVHRV Sbjct: 122 NIFAGDLFKMYSKYAESMGWKVTLVNTTPGSSGGFAGIEFIISGENAFSYLKHESGVHRV 181 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE+ GR+HTS A V LPE +I+ D+ EDIR DT +SG+GGQ VNTT SAVR Sbjct: 182 QRVPETESQGRIHTSTAVVLALPEQEDIEYDVKWEDIRFDTYNSSGAGGQSVNTTYSAVR 241 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPT ++V + E+SQH N+ RA K+L R+YD ++ + +RK IG G+RSE Sbjct: 242 LTHIPTNVVVTSQEERSQHANKDRAYKLLVTRIYDKIQQEQLEKEGESRKALIGRGNRSE 301 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IRTYN+ Q R+TDHRI LT+ +L+ +++G ID II PL+ Q + + S Sbjct: 302 KIRTYNYPQNRVTDHRIGLTINRLDAIMEGRIDLIIEPLINEIQKEALEGQS 353 >gi|317179883|dbj|BAJ57669.1| peptide chain release factor 1 [Helicobacter pylori F32] Length = 352 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVEV+SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEVVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|261837535|gb|ACX97301.1| peptide chain release factor RF-1 [Helicobacter pylori 51] Length = 352 Score = 246 bits (628), Expect = 4e-63, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLFSILKRYDELTALLSSTEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|319943696|ref|ZP_08017977.1| peptide chain release factor RF2 [Lautropia mirabilis ATCC 51599] gi|319742929|gb|EFV95335.1| peptide chain release factor RF2 [Lautropia mirabilis ATCC 51599] Length = 359 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 115/344 (33%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + KNR E+ + + +L +E A+ ++ I + +DL+ + Sbjct: 22 DEKKNRLTEVNSALEAPDIWNDAAAALELGKEKRALDNVVGTIEQLTGSLSDTRDLYEMA 81 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N D+ + +L + I + + + + + D C LEI+AG GG+EA Sbjct: 82 VAENDDATLEELERE-----SLGIEKGVEGLEFRRMFSNPADPGPCFLEIQAGAGGTEAC 136 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY R + +L S+ D G K + G + ++ E+G+HR+ Sbjct: 137 DWAAMLLRQYLRYCERRGFTTTLLEESEGDVAGIKGATLKVEGEYAYGYLRTETGIHRLV 196 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE + +VDI D+RID RASG+GGQHVN T+SAVR Sbjct: 197 RKSPFDSSGGRHTSFASVYVYPEVDDSIEVDINPADLRIDVYRASGAGGQHVNKTESAVR 256 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT +V +++SQH+NR AMK+LRARL+++E ++ E+ K IG G Sbjct: 257 ITHLPTNTVVQCQNDRSQHRNRDEAMKMLRARLFELELRKRQAEQDKVEASKTDIGWG-- 314 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N + VL G +DD I L Sbjct: 315 -HQIRSYVLDQSRIKDLRTNFETSNTKAVLDGDLDDFIAESLKQ 357 >gi|317010358|gb|ADU84105.1| peptide chain release factor 1 [Helicobacter pylori SouthAfrica7] Length = 352 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 248/354 (70%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V+ KL ++E ++I I + Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVVNDIKKLTELSKEQSSIEEISTASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ A+E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKALEIKKSELEATIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSER+RTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERVRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|297821206|ref|XP_002878486.1| hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] gi|297324324|gb|EFH54745.1| hypothetical protein ARALYDRAFT_907869 [Arabidopsis lyrata subsp. lyrata] Length = 417 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 128/354 (36%), Positives = 220/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + E+ +++++ V Y KL + + + +++ + +++ + Sbjct: 60 KMESVEKTWKELSVKLADPAVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKV 119 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D ++ ++ E+ ++ EI LE ++ LLLP D D ++ +LE+RAGTGG E Sbjct: 120 LAKEAGDDEDMAEMIGSEINSLSIEIEGLEKQLKVLLLPSDPLDARNILLEVRAGTGGDE 179 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA++ GDL RMY+RY+ WK ++S S+ + GGYK V I G V+S++K+ESGVHR Sbjct: 180 AAIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSKLKYESGVHR 239 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E++V I +DI + + R+ G+GGQ+VN ++A+ Sbjct: 240 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAI 299 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E++Q +N+ RA ++LRA+LY+++ + + RK Q+G+G RS Sbjct: 300 DLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARS 359 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R+TDHR+ + + L L G ++D + Q +++ SE Sbjct: 360 EKIRTYNYKDSRVTDHRLKMN-FALTSFLDGALEDAVQACAALEQKELMEELSE 412 >gi|253687049|ref|YP_003016239.1| hypothetical protein PC1_0648 [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259585229|sp|C6D8Z5|RF2_PECCP RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|251753627|gb|ACT11703.1| hypothetical protein PC1_0648 [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 365 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTIDQLTQGLEDVAGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D + ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEEDDEDTFNDTTVE-----LDALENKLGQLEFRRMFSGQYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVEDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHMPTGIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|317008750|gb|ADU79330.1| peptide chain release factor 1 [Helicobacter pylori India7] Length = 352 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSVLAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|116326889|ref|YP_796609.1| peptide chain release factor 1 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329879|ref|YP_799597.1| peptide chain release factor 1 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282347|sp|Q04W81|RF1_LEPBJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|122285261|sp|Q056R9|RF1_LEPBL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116119633|gb|ABJ77676.1| Peptide chain release factor 1 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123568|gb|ABJ74839.1| Peptide chain release factor 1 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 354 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 147/351 (41%), Positives = 223/351 (63%), Gaps = 2/351 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ ++ I ++ + + L +E + ++P+ K+ Y + ++++D Sbjct: 1 MIDRLEKIQEKYLRISEELNSAKDPSSLKSLYKERSRLTPLYLKVEEYLKIYKDKKDAEE 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D E+ + + E+ K++ ELE E+ LLL D + K+ ++EIRAGTGG E Sbjct: 61 LIP-SEKDEEMHSMLKEEIRRASKKLEELEKELEILLLTPDPNSGKNILVEIRAGTGGEE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LFV DLFRMY ++A +K K E++ S+ GG KEI+ + + KFE G HR Sbjct: 120 AGLFVADLFRMYSKFADKQKIKSEIIDSAPTGIGGLKEIIFALEDERAYDLFKFEGGTHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P+TE+ GR+HTSA TVAVLPEA E +++I D+RID R+SG+GGQHVNTTDSAV Sbjct: 180 VQRIPSTESGGRIHTSAVTVAVLPEADEEEIEINENDLRIDVYRSSGAGGQHVNTTDSAV 239 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V EKSQH+N+ +A+++L AR+ + + + A +K IGSGDRS Sbjct: 240 RITHIPTGVVVACQDEKSQHKNKAKALRILSARILEKQTEDKKQASDAIKKQMIGSGDRS 299 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ER+RTYNF QGR TDHRI T + L +++G ++++I L +A+ I Sbjct: 300 ERVRTYNFPQGRCTDHRIGFTSHNLSAIMEGDLEELIGALTEEDRARKISE 350 >gi|218245097|ref|YP_002370468.1| peptide chain release factor 1 [Cyanothece sp. PCC 8801] gi|226739099|sp|B7K205|RF1_CYAP8 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|218165575|gb|ACK64312.1| peptide chain release factor 1 [Cyanothece sp. PCC 8801] Length = 370 Score = 246 bits (627), Expect = 4e-63, Method: Composition-based stats. Identities = 143/354 (40%), Positives = 229/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + + E+ R+++ + D ++ +++ + + Q ++E Sbjct: 8 EKLQSVDQTYQELTHRLADPDIATNPDELQRVARLRSSLEETVLTYDSWKQTQEELIGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R++A +EV + +++ ELE ++ LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKDAGGDPEMREMAALEVEELAEKLEELEKKLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA +KW V+++S S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQKWTVKLVSESLADMGGFKEAILEIQGDRVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE +++V I +DI I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVQIDAKDIEITTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + + P GI + + E+SQ QNR RAM++LRA+LYD++ + + S+ RK Q+G+G R Sbjct: 248 VDLFYKPLGIRIFCTEERSQLQNRERAMQILRAKLYDLKLREQQDAVSSMRKSQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ L L+G I++II ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFS-LAGTLEGDIEEIIQSCISQDQQERLEELA 360 >gi|255326261|ref|ZP_05367347.1| peptide chain release factor 1 [Rothia mucilaginosa ATCC 25296] gi|283458332|ref|YP_003362953.1| protein chain release factor A [Rothia mucilaginosa DY-18] gi|255296715|gb|EET76046.1| peptide chain release factor 1 [Rothia mucilaginosa ATCC 25296] gi|283134368|dbj|BAI65133.1| protein chain release factor A [Rothia mucilaginosa DY-18] Length = 360 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 144/362 (39%), Positives = 213/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I L + A+++ ++++ ++ YA ++ I++ + Y K + + Sbjct: 3 ESIQVLLDEHADLQNQLADPAVQANQGKARRVGRRYAELTGIVTAYNKYTSLKDDLEAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D + +E +L LL+P+D DD ++ ILE++AG GG Sbjct: 63 EMADE---DPDFAAEIPGLEEELEVAQEKL----RRLLIPRDPDDGRNVILEVKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF GDL RMY RYA + WK E++SS+ D GGYK+ I GV++ +K Sbjct: 116 EAALFAGDLLRMYMRYAEHKGWKTEIISSTSTDVGGYKDAQIAIKGSSNEPAEGVWAHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA V V PE +++I D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVFPEVDEPEEIEINQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR AM+VLRARL +++++ E +A+R Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAAMRVLRARLLAHQQEQIDAENAAHRAS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 Q+ + DRSERIRTYNF + RI DHR Y L+ VL G ++ ++ + +A + Sbjct: 296 QVRTMDRSERIRTYNFPENRIADHRTGYKAYNLDAVLNGDLEPVVQSAIEMDEAHRLAQV 355 Query: 356 SE 357 + Sbjct: 356 GQ 357 >gi|315586075|gb|ADU40456.1| peptide chain release factor RF1 [Helicobacter pylori 35A] Length = 352 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAQKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE ++++ I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEISINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|225552361|ref|ZP_03773301.1| peptide chain release factor 1 [Borrelia sp. SV1] gi|225371359|gb|EEH00789.1| peptide chain release factor 1 [Borrelia sp. SV1] Length = 357 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 253/355 (71%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIVKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DTKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL+ A Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFIQGELDPLLDPLMIALQEQELKS 354 >gi|317181378|dbj|BAJ59162.1| peptide chain release factor 1 [Helicobacter pylori F57] gi|332672916|gb|AEE69733.1| peptide chain release factor RF1 [Helicobacter pylori 83] Length = 352 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLYSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|317176897|dbj|BAJ54686.1| peptide chain release factor 1 [Helicobacter pylori F16] Length = 352 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E + I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSFIEEISITSKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|283768251|ref|ZP_06341164.1| peptide chain release factor 1 [Bulleidia extructa W1219] gi|283105128|gb|EFC06499.1| peptide chain release factor 1 [Bulleidia extructa W1219] Length = 358 Score = 246 bits (627), Expect = 5e-63, Method: Composition-based stats. Identities = 144/344 (41%), Positives = 220/344 (63%), Gaps = 6/344 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + R+ I + + KL++E A+++ + + + Sbjct: 5 REKLIGMDQRYQTITNDLMDEKVFSNPALLTKLSKEQASLTQAVEAWHKLKALDERIEQA 64 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ + SD E++++A++E+ EL I +LL+PKD DDD I+EIR G GG Sbjct: 65 NEMMKE--SDVELKEIAKMELEECLPVQEELLEHIQHLLIPKDPDDDHDVIMEIRGGAGG 122 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 E +F GDL+RMY RYA + WKV+V+ +S ++ GG+ +++ +I G V+ +K+ESGV Sbjct: 123 DEGNIFAGDLYRMYTRYAESKGWKVQVMETSISEAGGFSQVIFSIKGNEVYRDLKWESGV 182 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GRVHTS ATV PEA E D++I D+ I+T RASG+GGQH+N TDS Sbjct: 183 HRVQRVPKTESQGRVHTSTATVLCQPEAEEADIEIDPADLTIETHRASGAGGQHINKTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRI H+PTGI V +SQ +NR AM+++RAR+Y+ +++ E A R+ +IG+GD Sbjct: 243 AVRIVHVPTGITVNCQEGRSQIENRETAMRLIRARVYEEIKRQRDEEAGAARRAKIGTGD 302 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RSE+IRTYN+ Q R+TDHRI LT+ +L+ +++G +D II L Sbjct: 303 RSEKIRTYNYPQNRVTDHRIGLTITQLDRIMEGKLDGIIAGLQA 346 >gi|188526883|ref|YP_001909570.1| peptide chain release factor 1 [Helicobacter pylori Shi470] gi|238691882|sp|B2URQ8|RF1_HELPS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|188143123|gb|ACD47540.1| peptide chain release factor 1 [Helicobacter pylori Shi470] Length = 352 Score = 245 bits (626), Expect = 5e-63, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINSSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|257058120|ref|YP_003136008.1| peptide chain release factor 1 [Cyanothece sp. PCC 8802] gi|256588286|gb|ACU99172.1| peptide chain release factor 1 [Cyanothece sp. PCC 8802] Length = 370 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 229/354 (64%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ + + E+ R+++ + D ++ +++ + + Q ++E Sbjct: 8 EKLQSVDQTYQELTHRLADPDIATNPDELQRVARLRSSLEETVLTYDSWKQTQEELIGAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D E+R++A +EV + +++ ELE ++ LLLP+D +DDK+ +LEIRAGTGG Sbjct: 68 QILKDAGGDPEMREMAALEVEELAEKLEELEKKLKILLLPRDPNDDKNIMLEIRAGTGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL RMY RYA +KW V+++S S D GG+KE + I G V+S++KFE+GVH Sbjct: 128 EASIWAGDLVRMYSRYAESQKWTVKLVSESLADMGGFKEAILEIQGDRVYSKLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TEA GRVHTS ATVA++PE +++V I +DI I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPVTEAGGRVHTSTATVAIMPEVDDVEVQIDAKDIEITTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + + P GI + + E+SQ QNR RAM++LRA+LY+++ + + S+ RK Q+G+G R Sbjct: 248 VDLFYKPLGIRIFCTEERSQLQNRERAMQILRAKLYELKLREQQDAVSSMRKSQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R+TDHR+ L L+G I++II ++ Q + + + Sbjct: 308 SEKIRTYNYKDNRVTDHRLGQNFS-LAGTLEGDIEEIIQSCISQDQQERLEELA 360 >gi|94309981|ref|YP_583191.1| peptide chain release factor 2 [Cupriavidus metallidurans CH34] gi|93353833|gb|ABF07922.1| peptide chain release factor RF-2 [Cupriavidus metallidurans CH34] Length = 357 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 170/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 NR E+ + + + + L +E A+ ++ + +L + Sbjct: 20 DVKVNRLDEVNGLLEDPDVWNNPKRAQDLGKEKKALEGVVQVLGKLTDDLNGTDELFELA 79 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + A L ++ + + D + ++I+AG GG+EA Sbjct: 80 REEGDDETLESIE-----ADVSGFEALVADMEFRRMFSGEMDQANAFIDIQAGAGGTEAC 134 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +Y + +K EVL S+ D G K + G F ++ E+GVHR+ Sbjct: 135 DWASMLLRQYLKYCERKGFKAEVLEESEGDVAGIKSATIKVEGEYAFGYLRTETGVHRLV 194 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE +V++ D+R+DT RASG+GGQH+N TDSAVR Sbjct: 195 RKSPFDSSGGRHTSFSSVFVYPEVDDSFEVEVNPADLRVDTYRASGAGGQHINKTDSAVR 254 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+ E ++ E K +G G Sbjct: 255 ITHMPTGIVVQCQNDRSQHRNRAEAMSMLKSRLYEHEMRKRQAEADKLEAGKTDVGWG-- 312 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 313 -HQIRSYVLDQSRIKDLRTNVEMSNTQKVLDGDLDPFIEASLKQ 355 >gi|78780006|ref|YP_398118.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9312] gi|119361576|sp|Q318L3|RF1_PROM9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78713505|gb|ABB50682.1| bacterial peptide chain release factor 1 (bRF-1) [Prochlorococcus marinus str. MIT 9312] Length = 364 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 142/353 (40%), Positives = 227/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E+++++ + KL E + + P++ + +E +D Sbjct: 9 RLKTASESFENLEVQLADPDIANDPKKLESIARERSKLEPLVIDFNKLLDTDKEIEDSKN 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ +D E+ L E++ +E+ +L + LLPKD D++S +LEIRAG GGSE Sbjct: 69 LLKENRNDKEMESLINEELINLEECKNQLIQKTTIALLPKDPRDERSVMLEIRAGAGGSE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWSVKPVSASESDMGGFKELVISVKGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ + T R+ G+GGQ+VN ++A+ Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKIDPTDLEVGTARSGGAGGQNVNKVETAI 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+++ K + + R Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYNF R TDHR+ + + LE +L G +D++I+ + Q +M+ + Sbjct: 309 EKIRTYNFKDNRTTDHRLG-SNFSLEPILAGQLDEVIDACIAQEQKRMMEDFN 360 >gi|51598456|ref|YP_072644.1| peptide chain release factor 1 [Borrelia garinii PBi] gi|61214604|sp|Q662G9|RF1_BORGA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|51573027|gb|AAU07052.1| peptide chain release factor 1 [Borrelia garinii PBi] Length = 357 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MFLEKLNSATSKIKLIEEKLQDINLIKNQKKYSKIIKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ +LE++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTIL-EKEDQQEMKELIKQELIDLDKKKEDLEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEIV I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSERKKWKTEIINFNETELGGFKEIVFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLTIELQEQKFKS 354 >gi|317968845|ref|ZP_07970235.1| peptide chain release factor 1 [Synechococcus sp. CB0205] Length = 367 Score = 245 bits (626), Expect = 6e-63, Method: Composition-based stats. Identities = 148/356 (41%), Positives = 226/356 (63%), Gaps = 5/356 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + F +E ++++ +L E A + P++ Q +++EQ+ Sbjct: 7 RERLETARTTFETLERQLADPDVAANPAQLEPIARERARLEPLVLGYDQLCQWRKQEQEA 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + D E+ LAQ E+ + +I +E ++ LLP+D D++S +LEIRAG GG Sbjct: 67 RQLLKESRGDQEMEALAQEELSGLATQIAAMEEQLTLALLPRDPRDERSVMLEIRAGAGG 126 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAA++ GDL RMYERYA WKV+ +S+S+ + GGYKE++ I G VFS++K+E+GV Sbjct: 127 DEAAIWAGDLARMYERYAQSVGWKVQPVSASEAELGGYKELILAIQGDSVFSQLKYEAGV 186 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++ Sbjct: 187 HRVQRVPATESQGRVHTSTATVAVMPEADPVEVQIDPTDLEISTARSGGAGGQNVNKVET 246 Query: 243 AVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AV + H PTGI + + E+SQ QNR RA+++LRA+LY+ E + + R Q+GSGD Sbjct: 247 AVDLLHKPTGIRVFCTQERSQLQNRERALEILRAKLYERELAEANAKERSARLAQVGSGD 306 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYN+ R TDHR+ LE VLQG + ++I ++A Q + + ++ Sbjct: 307 RSEKIRTYNYKDNRTTDHRLGRNFS-LEPVLQGQLAELIGACVSADQRRQLEELAD 361 >gi|317179532|dbj|BAJ57320.1| peptide chain release factor 1 [Helicobacter pylori F30] Length = 352 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLFSILKRYDELTALLSSTEVISDIKKLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKLLETKKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+S++KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSKLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|227498082|ref|ZP_03928255.1| peptide chain release factor RF1 [Actinomyces urogenitalis DSM 15434] gi|226832520|gb|EEH64903.1| peptide chain release factor RF1 [Actinomyces urogenitalis DSM 15434] Length = 366 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 143/358 (39%), Positives = 201/358 (56%), Gaps = 19/358 (5%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L + IE M++ +L YA + ++S + + + D + Sbjct: 15 LLEEYFGIEREMADPAISSDPGAMRRLGRRYAELGRVVSAYRAWQAAQADYDDAVELA-- 72 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + A E L +L+P+D DD + I+E++AG GG E+ALF Sbjct: 73 -EGDPDFAAEVPGLQAAAETATEHL----REVLVPRDPDDARDVIIEVKAGEGGEESALF 127 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 DL RMY RYA W VEVL ++D+D GGYK++ + GV++ +K+E G Sbjct: 128 ASDLARMYTRYAERMGWAVEVLDATDSDLGGYKDVRLAVKARSAVEPQDGVWAHLKYEGG 187 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TE+ GR+HTSAA V V+PE + +I D+RID R+SG GGQ VNTT Sbjct: 188 VHRVQRVPVTESQGRIHTSAAGVLVMPEVDDPGELEIDPNDLRIDVFRSSGPGGQSVNTT 247 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ +EKSQ QN+ A++VLRARL + A E + R+ Q+ + Sbjct: 248 DSAVRITHLPTGIVVSMQNEKSQLQNKEAALRVLRARLLAERAAQAAAEEAEARRSQVRT 307 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF + RITDHR Y L VL G + +I+ + +A+ + + E Sbjct: 308 VDRSERIRTYNFPENRITDHRTGYKAYNLSTVLDGDLGPVIDSAIAMDEAERLAAIGE 365 >gi|229818480|ref|ZP_04448761.1| hypothetical protein BIFANG_03788 [Bifidobacterium angulatum DSM 20098] gi|229784350|gb|EEP20464.1| hypothetical protein BIFANG_03788 [Bifidobacterium angulatum DSM 20098] Length = 362 Score = 245 bits (626), Expect = 7e-63, Method: Composition-based stats. Identities = 142/353 (40%), Positives = 203/353 (57%), Gaps = 20/353 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + +E +M+ V + KL +A + I++ Y K + + + + Sbjct: 14 KEYQSLEEQMASPEVVTDPNKMRKLGRRHAELGSIVTAYKAYLAVKNDLEAAREMASEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 E +E E+ ++E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 D-------FAAEAKRLESELPDVEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYTRYAEKRGWTVSVQSENTTELGGVKDVQVAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQRVP TE+ GR+ TSAA V V PE ++DI +D++ID +SG GGQ VNTT Sbjct: 187 RVQRVPVTESQGRIQTSAAGVIVFPEADDDNDEIDIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLA 359 >gi|303232564|ref|ZP_07319250.1| peptide chain release factor 1 [Atopobium vaginae PB189-T1-4] gi|302481351|gb|EFL44425.1| peptide chain release factor 1 [Atopobium vaginae PB189-T1-4] Length = 354 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 160/356 (44%), Positives = 229/356 (64%), Gaps = 8/356 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L +AE+E +M + V Y ++ +E+A S +++ Y + + Sbjct: 1 MRDKLEKLIAAYAELEKKMVDPAVVADQKEYTRIAKEHAHQSELVALAKEYIAALDDIEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + +SD R++ Q ++ A E+++ LE++I +L+P D +D+K I+EIRA G Sbjct: 61 AKEMLHEASSDE--REMLQADIAANEEKLPALEDDIKIMLIPGDPNDEKDTIVEIRAAAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAA+F GDL++MYER+A + WK+EVLSSS ++ GG+K I + G V+S MK+ESG Sbjct: 119 GDEAAIFAGDLYKMYERFADSKHWKIEVLSSSPSEAGGFKTIEFKMLGDKVYSVMKYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+ TS ATVAVLPEA EIDV I D+RIDT ASG GGQ VNTT Sbjct: 179 VHRVQRVPKTESQGRIQTSTATVAVLPEADEIDVQIDPTDLRIDTYCASGPGGQCVNTTY 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E+ A R QIG G Sbjct: 239 SAVRITHLPTNTVVQSQDQRSQIQNREVCMQMLRARLYEMELEKQQAEQGAERLSQIGRG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 +RSE+IRTYN Q R+TDHRI VL G + ++I L A +A+ + A Sbjct: 299 NRSEKIRTYNQPQDRVTDHRIGFNSTY-NGVLLGDNLINVIEALAAAERAEKLARA 353 >gi|699334|gb|AAA63095.1| prfA [Mycobacterium leprae] Length = 357 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 202/360 (56%), Gaps = 21/360 (5%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L AE+EL +++ + K +A ++PI++ + + Q + Sbjct: 4 IDVLLIEHAELELALADPELHSNPAEARKAGRRFARLAPIVATHRKLISARDDLQTAREL 63 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 S ++ E I EL ++ +L P D +LE+++G GG E+ Sbjct: 64 AAGDESFADEIAEL-------ESRIAELTTQLTDMLAPHDPHGPDDIVLEVKSGEGGEES 116 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG---------RGVFSRM 176 ALF DL RMY RYA W V VL + +D GGYK+ IS GV+SRM Sbjct: 117 ALFAADLARMYIRYAERHGWTVTVLDETTSDLGGYKDATLAISHKGASDGDAVDGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE EI +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEIGEVHIDESDLRIDVYRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTG++V +E+SQ QN+ RA++VL ARL + ++ SA+R Sbjct: 237 GVNTTDSAVRITHLPTGVVVTCQNERSQLQNKTRALQVLAARLQAMAEEQALANASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 QI + DRSERIRTYNF + RITDHRI + L+ VL G +D + + L A + + Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGYKAHNLDQVLDGDLDALFDALSAADKQSRLQQ 356 >gi|108800851|ref|YP_641048.1| peptide chain release factor 1 [Mycobacterium sp. MCS] gi|119869991|ref|YP_939943.1| peptide chain release factor 1 [Mycobacterium sp. KMS] gi|126436449|ref|YP_001072140.1| peptide chain release factor 1 [Mycobacterium sp. JLS] gi|119361564|sp|Q1B542|RF1_MYCSS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223572|sp|A3Q3C2|RF1_MYCSJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223573|sp|A1UJZ5|RF1_MYCSK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|108771270|gb|ABG09992.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium sp. MCS] gi|119696080|gb|ABL93153.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium sp. KMS] gi|126236249|gb|ABN99649.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium sp. JLS] Length = 357 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 209/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L A++E ++++ K +A ++PI++ + + + + + Sbjct: 8 IDALLAEHADLERQLADPALHADAGKARKAGRRFAQLAPIVATYRKLEAARGDLEAAREL 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D S EV +E + +LE +++ LL P+D D +LE+++G GG E+ Sbjct: 68 GADDAS-------FAAEVPELEATVDQLETQLSDLLAPRDPHDADDIVLEVKSGEGGEES 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRMKFES 180 ALF DL RMY RYA W V +L + +D GGYK+ +I GV+SR+KFE Sbjct: 121 ALFAADLARMYIRYAERHGWSVTILDETTSDLGGYKDATLSIRSKGDSADGVWSRLKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE E V I D+RID R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVEQVQIDESDLRIDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ + + SA+R QI Sbjct: 241 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQSLAEEQASADASADRASQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RI DHRIN + L+ VL G +D + + L A + + S Sbjct: 301 TVDRSERIRTYNFPENRIADHRINFKAHNLDQVLDGDLDPLFDALAAADKQARLQS 356 >gi|78211899|ref|YP_380678.1| peptide chain release factor 1 [Synechococcus sp. CC9605] gi|119361630|sp|Q3AMQ9|RF1_SYNSC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|78196358|gb|ABB34123.1| peptide chain release factor 1 [Synechococcus sp. CC9605] Length = 365 Score = 245 bits (625), Expect = 8e-63, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 223/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ +L E + + P++ + + E Sbjct: 9 RLETATASFRNLERQLADPDVAADPKRLESIARERSRLEPLVLDFEELQRLESERDSARQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D+ + +LAQ E+ +++++ L + LLP+D D++S +LEIRAG GG E Sbjct: 69 LLKDSRGDAAMEELAQDELASLQEQHATLTERLTLALLPRDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY+ W V+ +S ++ D GG++E++ ++ G V+S++KFE+GVHR Sbjct: 129 ACLWAGDLARMYERYSQKVGWAVQSISCTEADLGGFRELILSVRGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + +D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVQLDPKDLDISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+L + E+ A S++R+ Q+GSGDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLLEREQAAAAERESSDRRAQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ LE VL+G ++D+I + Q + + + S+ Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFT-LEPVLEGQLEDLIGACIAEEQRQKLEALSD 361 >gi|308182253|ref|YP_003926380.1| peptide chain release factor 1 [Helicobacter pylori PeCan4] gi|308064438|gb|ADO06330.1| peptide chain release factor 1 [Helicobacter pylori PeCan4] Length = 352 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 169/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVVSDIKKLTELSKEQSSIEEISIASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|306823422|ref|ZP_07456797.1| peptide chain release factor RF1 [Bifidobacterium dentium ATCC 27679] gi|309802666|ref|ZP_07696770.1| peptide chain release factor 1 [Bifidobacterium dentium JCVIHMP022] gi|304553129|gb|EFM41041.1| peptide chain release factor RF1 [Bifidobacterium dentium ATCC 27679] gi|308220730|gb|EFO77038.1| peptide chain release factor 1 [Bifidobacterium dentium JCVIHMP022] Length = 362 Score = 245 bits (625), Expect = 9e-63, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 206/355 (58%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+E D KL +A + I+S + Y Q K + + + + Sbjct: 14 EEYRNIEQQMAEPEVASDPDKMRKLGRRHAELGAIVSAYTAYKQTKDDLEAAKEMASEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ E E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLENELPEFEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYMRYAEKRGWAVTLQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + ++DI +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIDIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A + + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRASALRVLKSRLLAMKHEEEAAQAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|254261824|ref|ZP_04952878.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1710a] gi|254220513|gb|EET09897.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1710a] Length = 367 Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 182/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE+ ++ + + L E ++ +++ ++ D ++ Q L + Sbjct: 30 DVKSERLAEVNKQLEDPNVWNDSKNAQALGREKKSLESVVTTLTALDNDLRDAQALFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 HEEGDEETLVATE-----SDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGEYAYGYLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RL++ E ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFEAELRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 365 >gi|116515052|ref|YP_802681.1| hypothetical protein BCc_111 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285552|sp|Q057W1|RF1_BUCCC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116256906|gb|ABJ90588.1| peptide chain release factor 1 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 357 Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 162/358 (45%), Positives = 231/358 (64%), Gaps = 9/358 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES-PSVDA--YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ ++E +S + D + KL++E A + + + + K Sbjct: 1 MKKSIVNKLKSLKKRYIQLEKLLSNNYSKFDKREFSKLSKEKANLYDLYKEFMSWLSIKS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E +D+ ++ +D ++ LAQ E+L K +E+E +I LL+P D D SC +EIR Sbjct: 61 EIKDIQLLL----NDLDLSTLAQEELLIALKRKKEIEKKIKMLLIPIDPYDKNSCFIEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 A TGG EAA+F GDL +MY +YA + WKV++++ + + GGYKEI+ + G G R+K Sbjct: 117 AATGGHEAAIFSGDLCKMYMKYADFKSWKVDIINMHEGEKGGYKEIILKVIGIGACGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTSA TVA++PE + I D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPQTESQGRVHTSACTVAIMPEVPKSKRIILNTSDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG +V E+SQH+N+ +A+ VL A++Y + S RK Sbjct: 237 VNTTDSAVRITHLPTGCVVECQDERSQHKNKEKALSVLSAKIYSKMNAEKKLKNSLMRKS 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +G+G+RS+R RTYNFSQ R+TDHRINLT+Y+L VL G +D +I PLL HQA ++ Sbjct: 297 LLGTGERSDRNRTYNFSQNRVTDHRINLTIYRLNEVLLGKLDLLIEPLLQEHQADLLS 354 >gi|221198422|ref|ZP_03571468.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD2M] gi|221208901|ref|ZP_03581898.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD2] gi|221214768|ref|ZP_03587737.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD1] gi|221165307|gb|EED97784.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD1] gi|221171184|gb|EEE03634.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD2] gi|221182354|gb|EEE14755.1| peptide chain release factor 2, programmed frameshift [Burkholderia multivorans CGD2M] Length = 367 Score = 245 bits (624), Expect = 9e-63, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 30 DAKAARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTELDNDLRDALDLFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 REEGDEDTLIASE-----EDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGEYAYGYLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+ E ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAELRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 365 >gi|225437801|ref|XP_002274067.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297744098|emb|CBI37068.3| unnamed protein product [Vitis vinifera] Length = 392 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 164/357 (45%), Positives = 241/357 (67%), Gaps = 3/357 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +++ +++R A ++ ++ S Y + +E + I I+ K++E Sbjct: 24 LIGIMEQRLSAIEHRSAYLQDFINRPEASPVEYARANKELRKLRSSIEHITELRNKQKEI 83 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L +++ + + D ++ ++A E+ +E + L+N + LLPKD D++ CILE+RAG Sbjct: 84 DGLKSLMAECSEDKDMLNMAAEELGQAAEEEKRLQNLLLKSLLPKDEADERDCILEVRAG 143 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+F+MYE+Y+ WK EV+ +++D GYKE ISG GV+ ++KFE Sbjct: 144 TGGEEASLFAMDIFKMYEKYSQKNGWKFEVVDITESDLKGYKEASGAISGSGVYGKLKFE 203 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG+HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQH NT Sbjct: 204 SGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANT 263 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITHIP+G+ V E+SQH N+ +A+KVL A+LY++ER R+ +RS R QIG Sbjct: 264 TNSAVRITHIPSGMTVAIQDERSQHMNKAKALKVLCAKLYEIERSRIQKDRSKLRMEQIG 323 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 SGDRSERIRTYNF QGR+TDHR+ +T + + V+QG +D I+ LL + I S Sbjct: 324 SGDRSERIRTYNFPQGRVTDHRVGITHHSVNDVMQGENLDVFIDALLLQQEMDAIAS 380 >gi|320334062|ref|YP_004170773.1| peptide chain release factor 1 [Deinococcus maricopensis DSM 21211] gi|319755351|gb|ADV67108.1| Peptide chain release factor 1 [Deinococcus maricopensis DSM 21211] Length = 362 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 218/362 (60%), Gaps = 14/362 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 L+ ++ L++ + ++E +++ + Y ++ + ++PI++ Y + Sbjct: 1 MLTQ-KLAALEHEYEQVEAHLADPNIISDQGQYRRVARRHRELTPIVNLWREYCTLDTQA 59 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D ++ SD E+RDLA+ ++ A E +R ++ E+ LLLP D D CI+EIRAG Sbjct: 60 RDARELL----SDPEMRDLARADLDASEARMRAIDTELEVLLLPTDPHDPHDCIVEIRAG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EAALF DL MYERYA K+ VL ++++D GG ++ ++G G F +FE Sbjct: 116 AGGDEAALFAADLLSMYERYAEGAGLKLAVLDANESDLGGLSKVTFEVTGDGAFRAFRFE 175 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVPATE GR+HTS TVAVLP+ + +VD+ L ++RID R+ G+GGQ VNT Sbjct: 176 RGVHRVQRVPATETQGRIHTSTVTVAVLPQVEDAEVDLDLSEVRIDVFRSQGAGGQGVNT 235 Query: 240 TDSAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 TDSAVR + P ++V +SQ +NR +A+ VLRARL + ER + A+R Sbjct: 236 TDSAVRAVYRPGTPDEIVVVCQDGRSQIKNREKALVVLRARLAERERAVREAQERADRAA 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMIG 353 Q+GSGDRSE+IRTYN+ Q R+TDHR++ + LE V+ G + +I L+ + ++ Sbjct: 296 QVGSGDRSEKIRTYNYPQNRVTDHRLSGDVKNFPLETVVAGGLAPLIAALVNVEREALLQ 355 Query: 354 SA 355 Sbjct: 356 EL 357 >gi|50119718|ref|YP_048885.1| peptide chain release factor 2 [Pectobacterium atrosepticum SCRI1043] gi|81646129|sp|Q6D946|RF2_ERWCT RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|49610244|emb|CAG73687.1| putative peptide chain release factor 2 [Pectobacterium atrosepticum SCRI1043] Length = 365 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTIDQLAQGLEDVTGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + A + ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEEDDEDTFNETS-----AELDVLENKLGQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHLPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQVMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|171741092|ref|ZP_02916899.1| hypothetical protein BIFDEN_00158 [Bifidobacterium dentium ATCC 27678] gi|171276706|gb|EDT44367.1| hypothetical protein BIFDEN_00158 [Bifidobacterium dentium ATCC 27678] Length = 362 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 207/355 (58%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+E D KL +A + I+S + Y Q K + + + + Sbjct: 14 EEYRNIEQQMAEPEVASDPDKMRKLGRRHAELGAIVSAYTAYKQTKDDLEAAKEMASEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ E+E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLENELPEIEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYMRYAEKRGWAVTLQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + ++DI +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIDIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A + + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRASALRVLKSRLLAMKHEEEAAQAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|190572913|ref|YP_001970758.1| peptide chain release factor 1 [Stenotrophomonas maltophilia K279a] gi|229576662|sp|B2FQ14|RF1_STRMK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|190010835|emb|CAQ44444.1| putative peptide chain release factor 1 [Stenotrophomonas maltophilia K279a] Length = 360 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 167/337 (49%), Positives = 230/337 (68%), Gaps = 10/337 (2%) Query: 26 SPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 V + L+ E+A + PI ++ + K + + D ++R+LA E Sbjct: 26 PDVVADNTRFRDLSREFAQLEPIAIALADESRAKADLAAAEGMRA----DPDLRELADEE 81 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A + + ELE E+ LL+P+D D+ + LE+RAGTGG EAA+F GDLFRMY RYA Sbjct: 82 IAAAQARLLELEQELALLLVPRDPRDEGNLFLEVRAGTGGDEAAIFAGDLFRMYARYAER 141 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WKVE+ S + + GGYKE+VA + GRG FSR+KFESG HRVQRVPATE+ GR+HTSAA Sbjct: 142 QGWKVEIESDNPGEHGGYKEVVARVVGRGAFSRLKFESGTHRVQRVPATESQGRIHTSAA 201 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 TVA++PEA E+D + D+++DT R+SG+GGQHVN T+SA+RITH+PTG++V +E+ Sbjct: 202 TVAIIPEADEVDDIVINPADLKVDTFRSSGAGGQHVNKTESAIRITHVPTGVVVECQTER 261 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQH NR +AMK L+A+L D ER+R ++ +R+LQ+GSGDRS+RIRTYNF QGRITDHR Sbjct: 262 SQHANRDKAMKRLKAQLLDAERQRQDAAQAESRRLQVGSGDRSQRIRTYNFPQGRITDHR 321 Query: 321 I-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + LTLY L +L G +D ++ L HQ + S Sbjct: 322 VEGLTLYDLPNILAGDLDPLLQRLSHEHQVDALAQLS 358 >gi|27904663|ref|NP_777789.1| peptide chain release factor 1 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|29427417|sp|P59456|RF1_BUCBP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|27904060|gb|AAO26894.1| peptide chain release factor 1 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 362 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 235/361 (65%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L R+ EIE +S+ + + + +L++EY +S I + Sbjct: 1 MKSSMMKKLESLHRRYEEIESMLSDRTVISNQEKFRELSQEYLKLSDINYCFVQWKNCNH 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ DSE+ D+A+ E+ + K+++++E EI LLLP D +D ++C LEIR Sbjct: 61 DVIETKLLLL----DSELHDVAEQELQMLSKKMKKIETEIQVLLLPCDPNDQQNCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 + +GG EAA+F GDLFRMY +Y+ + WK ++ + + GGYK+I+ I+G+G + ++K Sbjct: 117 SASGGDEAAIFSGDLFRMYIKYSEFQNWKTNIIHMTHSLKGGYKDIIVKITGKGSYGKLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GRVHTS VAV+P + +++ + + D++IDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPKTESQGRVHTSTCIVAVIPVVPKKEIEKVNINDLKIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIP+G +V E+SQH+N+ +A+ VL +R+ E + + R+ Sbjct: 237 VNTTDSAVRITHIPSGQVVECQDERSQHKNKAKALSVLVSRIKAAELYNQRKKNAIQRRD 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+G RS+R RTYNF+Q R+TDHRINL +Y L+ VL G +D +I P++ H A ++ + Sbjct: 297 LLGTGMRSDRNRTYNFAQNRVTDHRINLVVYCLDEVLDGKLDVLIEPIIQEHNADVLSNL 356 Query: 356 S 356 S Sbjct: 357 S 357 >gi|195650889|gb|ACG44912.1| peptide chain release factor 1 [Zea mays] Length = 356 Score = 245 bits (624), Expect = 1e-62, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 246/355 (69%), Gaps = 3/355 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ R A ++ ++++ S + Y + +E+ + + I K++E + L Sbjct: 1 MEQRMKLIEQRSAYLQEQINQPAASPEEYSRANKEFRKLESTMELIKDLRSKQEEIEGLK 60 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + + + ++R++A+ E+L +E + L++E+ LLPKD D+K CILE+RAGTGG Sbjct: 61 SLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAGTGGE 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF D+FRMYE+YA WK +V+ ++ GYKE TISG G F ++KFESG+H Sbjct: 121 EASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFESGIH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE SGR+HTSA +VAVLP+A E+DV + ED+RIDT R+ GSGGQ VNTTDSA Sbjct: 181 RVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSA 240 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTG +V E+SQH N+ +A+KVLRARLY++ER+R+ +RS R QIGSGDR Sbjct: 241 VRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQIGSGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHR+ +T + + V++G +D ++ LL + I S Sbjct: 301 SERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAISSFG 355 >gi|116075738|ref|ZP_01472997.1| peptide chain release factor 1 [Synechococcus sp. RS9916] gi|116067053|gb|EAU72808.1| peptide chain release factor 1 [Synechococcus sp. RS9916] Length = 364 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 221/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ N F +E ++++ +L E + + P++ Q ++E Q + Sbjct: 9 RLDAATNSFHNLERQLADPDVASDPKRLQSIARERSRLEPLVQDYQSLQQVEEERQQAES 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + DS + +LA++E+ + + L + LLP D D++S +LEIRAG GG E Sbjct: 69 LLKESRGDSGMEELARLEIQDLNERQATLIERVTLALLPSDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY + + W V+ +S++ D GGY+E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACLWAGDLARMYERYGSRQGWNVQPVSANAADLGGYRELILSVKGDAVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I ++ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVQIDPTELEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+LY+ + S+ R+ Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLYERQLAEANAAESSARRAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN R+TDHR+ L+ +L+G +DD+I + Q + + + S Sbjct: 309 EKIRTYNAKDNRVTDHRLGRNFS-LDPMLEGQMDDVIGACIAEEQREKLEALS 360 >gi|86606113|ref|YP_474876.1| peptide chain release factor 1 [Synechococcus sp. JA-3-3Ab] gi|119361625|sp|Q2JUK1|RF1_SYNJA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|86554655|gb|ABC99613.1| peptide chain release factor 1 [Synechococcus sp. JA-3-3Ab] Length = 361 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 227/355 (63%), Gaps = 6/355 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEE---YAAISPIISKISIYDQKKQEEQDLH 63 +Q+ +++ F E+ +R+++ +L +++ + + + +E + Sbjct: 8 EQLKNVEATFQELTVRLADPDVATDPAELQRIAKARSSLEATVQTFHEWQKLTRELKQTE 67 Query: 64 TVIGD-HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + + D E+ +A+ E+ + +LE ++ LLLP+D +D+K+ +LEIRAGTGG Sbjct: 68 ELLREVASDDPELEAMARAELEQLRVRQEQLEEKLTLLLLPRDPNDEKNIMLEIRAGTGG 127 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAAL+ DL RMY RYA W V + S S+ + GGYKE + I G V+S++KFE+GV Sbjct: 128 EEAALWAADLARMYTRYAEKMGWSVRLASLSEGEMGGYKEAILEIRGDQVYSKLKFEAGV 187 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TEA GRVHTS ATVAV+PE E++V I +DI I T R+ G+GGQ+VN ++ Sbjct: 188 HRVQRVPVTEAQGRVHTSTATVAVMPEVDEVEVVIDPKDIEIKTARSGGAGGQNVNKVET 247 Query: 243 AVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AV + H PTGI + + E+SQ QNR RAM++LRA+LY+++ + S+ R++Q+G+G Sbjct: 248 AVDLLHKPTGIRVFCTEERSQLQNRQRAMQILRAKLYEMKLQEQQASISSARRMQVGTGS 307 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSE+IRTYN+ R+TDHR+N LE +L+G +D++I + +Q +++ S Sbjct: 308 RSEKIRTYNYKDNRVTDHRLNQNFL-LEPILEGELDELIQACIGLYQKELLAELS 361 >gi|317013501|gb|ADU80937.1| peptide chain release factor 1 [Helicobacter pylori Gambia94/24] Length = 352 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S V +L++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSVEVVSDIKRLTELSKEQSSIEEISVASKEYLSVLEN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+ I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V + D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|254191408|ref|ZP_04897912.1| peptide chain release factor 2 [Burkholderia pseudomallei Pasteur 52237] gi|157939080|gb|EDO94750.1| peptide chain release factor 2 [Burkholderia pseudomallei Pasteur 52237] Length = 367 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 182/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE+ ++ + + L E ++ +++ ++ D ++ Q L + Sbjct: 30 DVKSERLAEVNKQLEDPNVWNDSKNAQALGREKKSLESVVTTLTALDNDLRDAQALFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 HEEGDEETLVATE-----SDAAKLEARVADIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K +SG + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATIKVSGEYAYGYLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RL++ E ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFEAELRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLDDFISASLKQ 365 >gi|255548277|ref|XP_002515195.1| peptide chain release factor, putative [Ricinus communis] gi|223545675|gb|EEF47179.1| peptide chain release factor, putative [Ricinus communis] Length = 422 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 168/361 (46%), Positives = 242/361 (67%), Gaps = 7/361 (1%) Query: 1 MVFLSHKQICDLKNRFAEIEL---RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 ++ + +++ +++R A +E ++ SP+ Y + +E + + IS ++ Sbjct: 61 LIRIMEQRLSAIEHRSAYLENFIDKLEASPA--EYSRANKELRKLRRPVELISELRSIQK 118 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E L +++ + D + D+A E+ +E + L+N + LLP D D++ CILE+R Sbjct: 119 EIDGLRSLMAECPEDKHMIDMANEELNQAIEEEKRLQNVLLKSLLPTDDADERDCILEVR 178 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA+LF D+FRMYERY+ + WK EV+ +++D GYKE A ISG GVF ++K Sbjct: 179 AGTGGEEASLFSMDIFRMYERYSQKKGWKFEVVDITESDLKGYKEASAAISGAGVFGKLK 238 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESG+HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQH Sbjct: 239 FESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHA 298 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTT+SAVR+TH+PTG+ V+ E+SQH N+ +A+KVL A+LY++ER R+ RS R Q Sbjct: 299 NTTNSAVRVTHLPTGMTVSIQDERSQHMNKAKALKVLCAKLYEIERSRIQMSRSKLRSEQ 358 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 IGSGDRSERIRTYNF QGR+TDHR+ +T + + ++QG +D I+ LL + I S Sbjct: 359 IGSGDRSERIRTYNFPQGRVTDHRVGITHHAINNMMQGESLDVFIDALLLQQEMDAIASF 418 Query: 356 S 356 S Sbjct: 419 S 419 >gi|218507716|ref|ZP_03505594.1| peptide chain release factor 1 [Rhizobium etli Brasil 5] Length = 282 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 193/280 (68%), Positives = 237/280 (84%) Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + +++ I LE E+ LLLPKD D+KS ILEIRAGTGGSEAALF GDLFRMYE Sbjct: 1 MPNSNCPEVKERIEALEQEMQILLLPKDAADEKSAILEIRAGTGGSEAALFAGDLFRMYE 60 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+AA + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFESGVHRVQRVP TEA GR+ Sbjct: 61 RFAAEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRVPETEAGGRI 120 Query: 198 HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTS 257 HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+P+GI+VTS Sbjct: 121 HTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIVVTS 180 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRIT 317 SEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSGDRSERIRTYNF QGR+T Sbjct: 181 SEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIRTYNFPQGRVT 240 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 241 DHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 280 >gi|15611143|ref|NP_222794.1| peptide chain release factor 1 [Helicobacter pylori J99] gi|7388059|sp|Q9ZMZ0|RF1_HELPJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|4154581|gb|AAD05656.1| PEPTIDE CHAIN RELEASE FACTOR 1 [Helicobacter pylori J99] Length = 352 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 243/354 (68%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S V KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSVEVVSDIKKLTELSKEQSSIEEISVASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+ I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|320169793|gb|EFW46692.1| peptide chain release factor 1 [Capsaspora owczarzaki ATCC 30864] Length = 523 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 165/353 (46%), Positives = 243/353 (68%), Gaps = 6/353 (1%) Query: 9 ICDLKNRFAEIELRMSE--SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ + + +M+ + L + AA++P++ + K+++ DL ++ Sbjct: 156 LSNVTRDYQALTQQMTSISPSATKEINVLKGQIAALNPLVDALQRMTAKRKDIDDLDAMV 215 Query: 67 GD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + +D E+R +AQ E +++ ELE E+ +L+PK+ DD++ ILE+RAGTGG E Sbjct: 216 EASRNENDVEMRKMAQSEWTDAVEQLYELEQELLNVLVPKNEVDDRNAILEVRAGTGGLE 275 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF D+F MY+ YA +R WK EV+ S +D GG+KE ATISG GVF +KFESGVHR Sbjct: 276 ASLFSSDMFTMYQNYAEIRGWKFEVIDISRSDVGGFKEASATISGYGVFGHLKFESGVHR 335 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS TVA+LPEA ++D+++ D+RI+TMRASG+GGQHVN T+SA+ Sbjct: 336 VQRVPQTESQGRVHTSTVTVALLPEAQDVDIELNERDLRIETMRASGAGGQHVNKTESAI 395 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIP+GI V ++SQH+NR +A VLRARLY+++R+++A ER+A+R Q+G+G RS Sbjct: 396 RVTHIPSGIAVHVQEDRSQHKNRAKAYSVLRARLYEIQREKLAQERAAHRAEQVGTGSRS 455 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 ERIRTYNF Q R+TDHR+N+TL+ + L G +D+II L T A+ + Sbjct: 456 ERIRTYNFPQDRVTDHRVNVTLHGVPEFLLGEGLDEIIASLRTHEHAEELAHL 508 >gi|126697059|ref|YP_001091945.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9301] gi|166223586|sp|A3PF19|RF1_PROM0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|126544102|gb|ABO18344.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9301] Length = 364 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 143/353 (40%), Positives = 227/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E+++++ + KL E + + P++ + +E +D Sbjct: 9 RLKTASESFENLEVQLADPDIANDPKKLESIARERSKLEPLVLDFNKLLDTDKEIEDSKN 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ +D E+ L E++ +E+ EL + LLPKD D++S +LEIRAG GG+E Sbjct: 69 LLKENRNDKEMESLINEELITLEESKSELIQKTTIALLPKDPRDERSVMLEIRAGAGGNE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWSVKPVSASESDMGGFKELVISVKGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ + T R+ G+GGQ+VN ++A+ Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKIDPTDLEVGTARSGGAGGQNVNKVETAI 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+++ K + + R Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYNF R TDHR+ + + LE +L G +D++IN + Q +M+ + Sbjct: 309 EKIRTYNFKDNRTTDHRLG-SNFSLEPILAGQLDEVINACIAQEQKRMMEDFN 360 >gi|269128128|ref|YP_003301498.1| peptide chain release factor 1 [Thermomonospora curvata DSM 43183] gi|268313086|gb|ACY99460.1| peptide chain release factor 1 [Thermomonospora curvata DSM 43183] Length = 361 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 152/359 (42%), Positives = 215/359 (59%), Gaps = 19/359 (5%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L + EIE ++++ +A +L + YA + PI+ + + + + Sbjct: 3 LDELIGEYTEIEGKLADPAVHADQNAARRLGKRYAQLRPIVETARQLRSVEGDLEAAREL 62 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + E +EK ELE ++ LL+P+D +DDK ILEI+AG GG E+ Sbjct: 63 -------AAEDGAFAAEAAELEKRRTELEQKLRKLLIPRDPNDDKDVILEIKAGEGGEES 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG--------VFSRMK 177 ALF GDL RMY RYA WK E+LSS +D GGYK++ + R +S +K Sbjct: 116 ALFAGDLLRMYLRYAERIGWKTEILSSQPSDLGGYKDVTVAVKARPGPDGEPIGAWSHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE+ GR+HTSA V V PEA EIDV I D+RID R+SG GGQ V Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAVGVLVTPEAEEIDVQIDPNDLRIDVYRSSGPGGQSV 235 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTG++V +EKSQ QN+ +AM++LR+RL + ++ +A R+ Q Sbjct: 236 NTTDSAVRITHLPTGVVVSCQNEKSQLQNKEQAMRILRSRLLALAQQEAEAAAAAERRSQ 295 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + + DRSER+RTYNF + RI+DHR+ Y L+ VL G + ++I L+ A + + A Sbjct: 296 VRTVDRSERVRTYNFPENRISDHRVGYKAYNLDQVLDGDLHNVIQTLVEADLERRLAEA 354 >gi|224283865|ref|ZP_03647187.1| peptide chain release factor 1 [Bifidobacterium bifidum NCIMB 41171] gi|310287872|ref|YP_003939130.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bifidobacterium bifidum S17] gi|311064752|ref|YP_003971477.1| peptide chain release factor 1 (RF-1) PrfA [Bifidobacterium bifidum PRL2010] gi|313141020|ref|ZP_07803213.1| peptide chain release factor 1 [Bifidobacterium bifidum NCIMB 41171] gi|309251808|gb|ADO53556.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bifidobacterium bifidum S17] gi|310867071|gb|ADP36440.1| PrfA Bacterial Peptide Chain Release Factor 1 (RF-1) [Bifidobacterium bifidum PRL2010] gi|313133530|gb|EFR51147.1| peptide chain release factor 1 [Bifidobacterium bifidum NCIMB 41171] Length = 362 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 142/355 (40%), Positives = 206/355 (58%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+S Y + + + + G+ Sbjct: 14 EEYQSIEQQMASPEVVTNPDKMRKLGRRHAELGAIVSAYQSYTAVRDDLEAAREMAGEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ +E E+ E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 EFADEAK-------RLEAELPAAEEKLRNALIPRDPDDARDVIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYLRYAEKRGWAVTVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A+ + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEAERLANQ 361 >gi|224534432|ref|ZP_03675010.1| peptide chain release factor 1 [Borrelia spielmanii A14S] gi|224514534|gb|EEF84850.1| peptide chain release factor 1 [Borrelia spielmanii A14S] Length = 357 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 168/355 (47%), Positives = 250/355 (70%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MFLEKLNSATSKIKSIEEKLQDINLIKNQKKYSKIIKEYTHLEKINTKKIEYEKILNQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ + E+++L + E++ ++K+ E+E+EI LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTIL-EKEDQQEMKELIKQELIDLDKKKEEVEHEIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYGMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLTIELQEQTLKS 354 >gi|22331914|ref|NP_191850.2| APG3 (ALBINO AND PALE GREEN); translation release factor/ translation release factor, codon specific [Arabidopsis thaliana] gi|19699096|gb|AAL90914.1| AT3g62910/T20O10_10 [Arabidopsis thaliana] gi|21928033|gb|AAM78045.1| AT3g62910/T20O10_10 [Arabidopsis thaliana] gi|34392768|dbj|BAC82693.1| Chloroplast Release Factor 1 [Arabidopsis thaliana] gi|332646889|gb|AEE80410.1| Peptide chain release factor 1 [Arabidopsis thaliana] Length = 422 Score = 244 bits (623), Expect = 1e-62, Method: Composition-based stats. Identities = 130/354 (36%), Positives = 222/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + E+ +++++ V Y KL + + + +++ + +++ + Sbjct: 60 KMESVEKTWKELSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKV 119 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D ++ ++ E+ ++ KEI ELE ++ LLLP D D ++ +LE+RAGTGG E Sbjct: 120 LAKEAGDDEDMAEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDE 179 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA++ GDL RMY+RY+ WK ++S S+ + GGYK V I G V+S++K+ESGVHR Sbjct: 180 AAIWTGDLVRMYQRYSERSSWKFSMVSCSEAEHGGYKTCVMEIKGNRVYSKLKYESGVHR 239 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E++V I +DI + + R+ G+GGQ+VN ++A+ Sbjct: 240 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAI 299 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E++Q +N+ RA ++LRA+LY+++ + + RK Q+G+G RS Sbjct: 300 DLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARS 359 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R+TDHR+ + + L L G ++D + Q +++ SE Sbjct: 360 EKIRTYNYKDSRVTDHRLKMN-FALTTFLDGALEDAVQACAALEQKELMEELSE 412 >gi|209519985|ref|ZP_03268764.1| peptide chain release factor 2 [Burkholderia sp. H160] gi|209499582|gb|EDZ99658.1| peptide chain release factor 2 [Burkholderia sp. H160] Length = 384 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D R E+ + + + L +E + + K++ + QDL + Sbjct: 47 DDKALRLIEVNRELEDPDVWNDAKHAQALGKEKKLLDDTVGKLTSITNDVNDAQDLFEMA 106 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + A + I ++ + + + D + L+I+AG GG+EA Sbjct: 107 REEADDETLLACE-----ADAQAIEARVADMEFRRMFANPADPNNAFLDIQAGAGGTEAC 161 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL ++ D G K I G + ++ E+GVHR+ Sbjct: 162 DWASMLLRQYLRYCERKGFKTEVLEQTEGDVAGIKNATIKIEGEYAYGFLRTETGVHRLV 221 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 222 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 281 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+P+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 282 ITHMPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQAEQDKLEAGKTDVGWG-- 339 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 340 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 382 >gi|297626232|ref|YP_003687995.1| peptide chain release factor 1 (RF-1) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921997|emb|CBL56559.1| Peptide chain release factor 1 (RF-1) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 359 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 133/355 (37%), Positives = 206/355 (58%), Gaps = 16/355 (4%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L+ FA++E ++++ V K+ Y+ ++ ++ + + Q ++ + Sbjct: 8 LRQEFADLEKQLADPAVVSDQARSRKVGRRYSELTGVVHALDEHQQLTEDLSAARELA-- 65 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D A +++ +L LL P+D D I+EI++G GG E+ALF Sbjct: 66 -DDDPAFAAEADQISARLDEVTDKLTA----LLAPRDPLDSNDAIMEIKSGEGGEESALF 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRMKFESGVH 183 GDL MY+ +A W E++ + D GG+K + + + +KFE GVH Sbjct: 121 AGDLLNMYQHFAEREGWSTEIIDAEPTDLGGFKSVTLAFRATGHDAQAPYGALKFEGGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTSAA V V+P+ E +++I +D+RID R++G GGQ VNTTDSA Sbjct: 181 RVQRVPVTESQGRIHTSAAGVLVMPDVEESEIEINPDDLRIDVYRSTGKGGQGVNTTDSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++V + ++SQ QN+ +A++VLRARL ++ A + RK Q+ + DR Sbjct: 241 VRITHLPTGVVVTSQDQRSQLQNKEQALRVLRARLVAAAEEQAAQQAEQARKSQVRTVDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SERIRTYNF + RITDHRI + L+ VL G ++ +I L A A+ +G A+E Sbjct: 301 SERIRTYNFPENRITDHRIGFKAHNLDAVLGGELEPLIEALQAADLAERLGQATE 355 >gi|298711208|emb|CBJ32429.1| peptide chain release factor 1 [Ectocarpus siliculosus] Length = 448 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 141/358 (39%), Positives = 232/358 (64%), Gaps = 9/358 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +Q+ + F E+ R+ + + ++++E A++ I++ + Y + ++ + Sbjct: 78 EQLSGIDRTFNELTERLGDPDVLANPKLIMEVSQERASVEEIVNCYAEYTKAAEDLEGAK 137 Query: 64 TVIGDHNS---DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+E++++A+ E+ +E+ + LE ++ LLLP D +DD++ +LEIRAGT Sbjct: 138 EMFTESSGAGGDAEMKEMAREEIRDLEEVMEALETKMKLLLLPTDPNDDRNVMLEIRAGT 197 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAAL+ +L +Y++YA + W ++V+ S+ + GG++ ++A ++G V+S++K+E+ Sbjct: 198 GGDEAALWAAELLGVYKKYALEQGWSLKVIESAMVEAGGFRTVIAEVNGDKVYSKLKYEA 257 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE GRVHTS ATVA++PE E+ V+I EDI I T R+ GSGGQ+VN Sbjct: 258 GVHRVQRVPATETQGRVHTSTATVAIMPEVDEVAVNIRPEDIEIKTARSGGSGGQNVNKV 317 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAV + H PTGI + + E+SQ +NR AMK+LR+R+YD+E ++ E S NRK Q+GS Sbjct: 318 ESAVDLFHKPTGIRIFCTQERSQLKNREVAMKLLRSRVYDIELEKQQAETSGNRKAQVGS 377 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 G RSE+IRTYN+ R +DHRI + L L G +DD+I + Q +++ + Sbjct: 378 GSRSEKIRTYNWKDSRCSDHRIG-KNFPLNNFLSGSGLDDMIGACILLDQQELMAELA 434 >gi|330447415|ref|ZP_08311064.1| peptide chain release factor 2 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491606|dbj|GAA05561.1| peptide chain release factor 2 [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 347 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 176/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E A++ ++ I DQ ++ + L + Sbjct: 10 DAKKERLEEVNAELEQPDVWNEPERAQALGKERASLEAVVETIDQLDQGVEDVEGLLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + ++ E+ E ++ + + D C ++++AG+GG+EA Sbjct: 70 VEEEDQETFDEIEPE-----LAELEEKLAKLEFRRMFAGDHDPSDCYVDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K EV+ S+ D G K +SG + ++ E+GVHR+ Sbjct: 125 DWTSMMLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATIRVSGEYAYGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 185 RKSPFDSGGRRHTSFASAFVYPEIDDNIAIDINPSDLRIDVYRASGAGGQHVNTTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+L++ E ++ E+ + K IG G Sbjct: 245 ITHLPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEFELQKQNAEKQANEDSKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 344 >gi|307636767|gb|ADN79217.1| peptide chain release factor 1 [Helicobacter pylori 908] gi|325995353|gb|ADZ50758.1| Peptide chain release factor 1 [Helicobacter pylori 2018] gi|325996950|gb|ADZ49158.1| Peptide chain release factor 1 [Helicobacter pylori 2017] Length = 352 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 166/354 (46%), Positives = 244/354 (68%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + V +L++E ++I I Y + Sbjct: 1 MSILAEKLSSILRRYDELTALLSSAEVVSDIKRLTELSKEQSSIEEISVASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+ I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIVLIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V + D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVTLNPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGNLDEVINPLIAHAQSQ 350 >gi|187924547|ref|YP_001896189.1| peptide chain release factor 2 [Burkholderia phytofirmans PsJN] gi|187715741|gb|ACD16965.1| peptide chain release factor 2 [Burkholderia phytofirmans PsJN] Length = 417 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D R E+ + + + L E + + K++ D ++ QDL + Sbjct: 80 DDKALRLIEVNRELEDPDVWNDSKHAQALGREKKLLDDTVGKLTSLDNDLRDAQDLFDMA 139 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + I + ++ + + + D + L+I+AG GG+EA Sbjct: 140 REEDDEETLLACE-----SDAQGIEQRVADMEFRRMFANPADPNNAFLDIQAGAGGTEAC 194 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL +D D G K I G + ++ E+GVHR+ Sbjct: 195 DWASMLLRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHRLV 254 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +VDI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 255 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVR 314 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIP+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 315 ITHIPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQEEQDKLEAGKTDVGWG-- 372 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 373 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 415 >gi|217033144|ref|ZP_03438604.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128] gi|298736978|ref|YP_003729508.1| peptide chain release factor RF-1 [Helicobacter pylori B8] gi|216945129|gb|EEC23827.1| hypothetical protein HPB128_185g4 [Helicobacter pylori B128] gi|298356172|emb|CBI67044.1| peptide chain release factor RF-1 [Helicobacter pylori B8] Length = 352 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 167/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGSLDEVINPLIAHAQSQ 350 >gi|238787318|ref|ZP_04631117.1| Peptide chain release factor 2 [Yersinia frederiksenii ATCC 33641] gi|238724580|gb|EEQ16221.1| Peptide chain release factor 2 [Yersinia frederiksenii ATCC 33641] Length = 347 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +A+ I++ I DQ ++ L + Sbjct: 10 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSALEEIVTTIDQLDQGMEDVSGLLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + ++ + + D +C L+++AG+GG+EA Sbjct: 70 IEADDEETFNEAV-----AELDILDGKLGQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 125 DWASMLLRMYLRWAEAKGFKTEIIEESDGDVAGLKSATIKIIGDYAFGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 185 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + K IG G Sbjct: 245 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLEDNKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 345 >gi|42569997|ref|NP_182225.3| peptide chain release factor, putative [Arabidopsis thaliana] gi|124301088|gb|ABN04796.1| At2g47020 [Arabidopsis thaliana] gi|330255695|gb|AEC10789.1| Peptide chain release factor 1 [Arabidopsis thaliana] Length = 413 Score = 244 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 162/359 (45%), Positives = 244/359 (67%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +++ +++R A ++ +++ S + + + +E + + I+ K++E Sbjct: 52 LIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKEI 111 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L +++ + + D ++ DLA E+ +E + L+ + LLPKD D++ CILE+RAG Sbjct: 112 DGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAG 171 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+FRMYERY+ + WK +++ +++D GYKE A I G V+ ++KFE Sbjct: 172 TGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITESDMKGYKEASAAICGASVYGKLKFE 231 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG+HRVQR+P TE SGR+HTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQH NT Sbjct: 232 SGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANT 291 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRI H+PTG+MV+ E+SQH NR +A+KVL ARLY++ER R+ + RS R QIG Sbjct: 292 TNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQSSRSKLRSDQIG 351 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRS RIRTYNF QGR+TDHR+ +T + +E ++QG +D I+ LL + I S S Sbjct: 352 SGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQGENLDMFIDALLLRQEMDAIASFS 410 >gi|23335569|ref|ZP_00120804.1| COG0216: Protein chain release factor A [Bifidobacterium longum DJO10A] gi|189440751|ref|YP_001955832.1| peptide chain release factor 1 [Bifidobacterium longum DJO10A] gi|238692046|sp|B3DR51|RF1_BIFLD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189429186|gb|ACD99334.1| Protein chain release factor A [Bifidobacterium longum DJO10A] Length = 362 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+ + Q K + + G+ Sbjct: 14 EEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVDAYKAWLQVKDDLAAAQEMAGEDA 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ +E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLEDELPGVEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ MK+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVNVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHLPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|68171785|ref|ZP_00545129.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa] gi|67998796|gb|EAM85504.1| Peptide chain release factor 1 [Ehrlichia chaffeensis str. Sapulpa] Length = 311 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 172/309 (55%), Positives = 229/309 (74%), Gaps = 2/309 (0%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 I Y+ +++ L +I + +D E++ LA+ E +K++ ++++++ LLPKD DD Sbjct: 1 IDQYNILQKDIAGLEELINNPETDHELKSLAKEEFYERQKQLPKVKHKLKLSLLPKDKDD 60 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 ++ ILEIRAGTGG EAALFV DL+RMY +YA + WK E ++SS GG+KEI IS Sbjct: 61 ARNAILEIRAGTGGEEAALFVTDLYRMYTKYAEQKNWKFEQINSSSTGIGGHKEISLCIS 120 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 G VF+R+KFESGVHRVQRVP TEASGR+HTSAATVAVLPE E+D+ I +D+RID R Sbjct: 121 GSNVFARLKFESGVHRVQRVPETEASGRLHTSAATVAVLPEIEEVDLKIDEKDLRIDVYR 180 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG GGQ VNTTDSAVRITHIP+GI+V EKSQH+N+ +A+KVLRARLY++E+++ Sbjct: 181 SSGPGGQSVNTTDSAVRITHIPSGIVVIQQDEKSQHKNKSKALKVLRARLYNLEKQKRDA 240 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTA 346 E S RK QIGSGDRSERIRTYNF Q RITDHRINLTLY+L+ ++ +G +D+ I L+ Sbjct: 241 EISQMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTLYRLDDIMKEGNLDEFIEALIAE 300 Query: 347 HQAKMIGSA 355 +A + + Sbjct: 301 DEANKLKNL 309 >gi|260435474|ref|ZP_05789444.1| peptide chain release factor 1 [Synechococcus sp. WH 8109] gi|260413348|gb|EEX06644.1| peptide chain release factor 1 [Synechococcus sp. WH 8109] Length = 365 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 139/354 (39%), Positives = 223/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ +L E + + P++ + + E Sbjct: 9 RLETATASFRNLERQLADPDVAADPKRLESIARERSRLEPLVLDFEELQRLESERDSARQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D D+ + +LAQ E+ +++++ L + LLP+D D++S +LEIRAG GG E Sbjct: 69 LLKDSRGDAAMEELAQDELASLQEQHATLTERLTLALLPRDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY+ W V+ +S ++ D GG++E++ ++ G V+S++KFE+GVHR Sbjct: 129 ACLWAGDLARMYERYSQKVGWAVQSMSCTEADLGGFRELILSVRGESVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + +D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVQLDPKDLDISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+L + E+ A S++R+ Q+GSGDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLLEREQAAAAERESSDRRAQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ LE VL+G ++D+I + Q + + + S+ Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFT-LEPVLEGQLEDLIGACIAEEQRQKLEALSD 361 >gi|51597475|ref|YP_071666.1| peptide chain release factor 2 [Yersinia pseudotuberculosis IP 32953] gi|81638630|sp|Q666T2|RF2_YERPS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|51590757|emb|CAH22402.1| Peptide chain release factor 2 [Yersinia pseudotuberculosis IP 32953] Length = 366 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E + + I++ I +Q ++ L + Sbjct: 29 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA 88 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + ++ + + D +C L+++AG+GG+EA Sbjct: 89 VEADDEETFNET-----IAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQ 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 144 DWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 204 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + K IG G Sbjct: 264 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLEDNKSDIGWG-- 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 322 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 364 >gi|194477029|ref|YP_002049208.1| peptide chain release factor 1 [Paulinella chromatophora] gi|171192036|gb|ACB42998.1| peptide chain release factor 1 [Paulinella chromatophora] Length = 366 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 143/354 (40%), Positives = 231/354 (65%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E ++++ D K E++ + PI+ Q +++ ++ Sbjct: 9 RLETATRTFENLERQLADPDVAVNPDQLQKFAREHSRLEPIVIDSKALKQAQKQREEAIL 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +H +D E+ LA E+ A+++ I L ++ LLP+D+ D++S +LEIR+GTGG E Sbjct: 69 LLREHRNDPEMEALANEEIGALDEVIERLTKQLTLALLPRDSRDERSVMLEIRSGTGGGE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY+ W+V+ LSSS+ + GG++E++ I G GV+S++K+E+GVHR Sbjct: 129 ACIWAGDLARMYERYSQSVGWQVQALSSSEAELGGFRELILAIRGEGVYSKLKYEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA +++V + +DI I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADKVEVQLDPKDIEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA+++LRA+L + + A S+ RK Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERALEILRAKLLERQLAEAAAAESSARKAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ L+ +L G +++II+ + Q K + + ++ Sbjct: 309 EKIRTYNYKDNRTTDHRLGQNFS-LDSILNGNLEEIIDTCIALDQQKQLENLAD 361 >gi|163840178|ref|YP_001624583.1| peptide chain release factor 1 [Renibacterium salmoninarum ATCC 33209] gi|189039986|sp|A9WNB3|RF1_RENSM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|162953654|gb|ABY23169.1| peptide chain release factor 1 [Renibacterium salmoninarum ATCC 33209] Length = 360 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 150/361 (41%), Positives = 207/361 (57%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + I L + A++++R+S+ KL YA +S I+ Q + Sbjct: 3 ESIQGLLDEHADLQIRLSDPAVHADQSLARKLGRRYAELSTIVEGYHQVQQLSDDLAAAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + DSE + + +L LL+P+D DD + ILE++AG GG Sbjct: 63 EMASE---DSEFAAEVPVLEEQLAHAQEKL----RRLLIPRDPDDGRDVILEVKAGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 E+ALF DL RMY RYA + WK+EV+S++++D GGYK+I + GVF+ +K Sbjct: 116 ESALFAADLVRMYSRYAESKGWKIEVISATESDLGGYKDIQIAVKGRSNDPAEGVFAALK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVP TE+ GR+HTSAA V V PE E + I D++ID R+SG GGQ Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAAGVLVFPEVDEPEEVEISQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH PTGI+V +EKSQ QNR M+VLRAR+ +++ + E SA RK Sbjct: 236 VNTTDSAVRITHFPTGIVVAMQNEKSQLQNREAGMRVLRARILAHQQELIDAENSAVRKS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYNF + RI DHR Y L+ V+ G + +I + + + + Sbjct: 296 QIRTMDRSERIRTYNFPENRIADHRTGYKSYNLDAVMNGDLGPVIQSAIEMDEQSRLDAL 355 Query: 356 S 356 S Sbjct: 356 S 356 >gi|113867189|ref|YP_725678.1| protein chain release factor B [Ralstonia eutropha H16] gi|113525965|emb|CAJ92310.1| protein chain release factor B (RF-2) [Ralstonia eutropha H16] Length = 357 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 111/339 (32%), Positives = 173/339 (51%), Gaps = 15/339 (4%) Query: 15 RFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + + + + L +E AI ++S +S ++L + + Sbjct: 25 RLDEVNGLLEDPDVWNNPKRAQDLGKEKKAIEGVVSVLSKLTDDLSGAEELFELAREEGD 84 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D + + A K E+ + + + D + ++I+AG GG+EA + Sbjct: 85 DDTLEAIE-----ADVKGFEEIVAGMEFRRMFSGEMDQANAFIDIQAGAGGTEACDWASM 139 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L R Y +Y + +K EVL S+ D G K I G F ++ E+GVHR+ R Sbjct: 140 LLRQYLKYCERKGFKAEVLEESEGDVAGIKSATIKIEGEYAFGYLRTETGVHRLVRKSPF 199 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++SG HTS ++V V PE +V++ D+R+DT RASG+GGQH+N TDSAVRITHIP Sbjct: 200 DSSGGRHTSFSSVFVYPEVDDSFEVEVNPADLRVDTYRASGAGGQHINKTDSAVRITHIP 259 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V +++SQH+NR AM +L++RLY+ E ++ E K +G G +IR Sbjct: 260 TGIVVQCQNDRSQHRNRAEAMSMLKSRLYEHEMRKRQAEADKLEAGKTDVGWG---HQIR 316 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y Q RI D R N+ + + VL G +D I L Sbjct: 317 SYVLDQSRIKDLRTNVEMSNTQKVLDGDLDPFIEASLKQ 355 >gi|206560551|ref|YP_002231316.1| peptide chain release factor 2 [Burkholderia cenocepacia J2315] gi|238693117|sp|B4EDB1|RF2_BURCJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|198036593|emb|CAR52490.1| peptide chain release factor 2 [Burkholderia cenocepacia J2315] Length = 367 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L E + +++ ++ D ++ DL + Sbjct: 30 DAKAARLTEVNKELEDPNVWNDSKNAQALGREKKLLEGVVTTLTALDSDLRDALDLFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ +I + + + D +C ++I+AG GG+EA Sbjct: 90 REEGDEDTLLASE-----EDAAKLEARVGDIEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K ++G + ++ E+G+HR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIKNATVKVTGEYAYGFLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY+VE ++ E+ + K +G G Sbjct: 265 ITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEVEMRKRQAEQDKLESSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFISASLKQ 365 >gi|291457338|ref|ZP_06596728.1| peptide chain release factor 1 [Bifidobacterium breve DSM 20213] gi|291381173|gb|EFE88691.1| peptide chain release factor 1 [Bifidobacterium breve DSM 20213] Length = 362 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 142/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+ + Q K + + + G+ Sbjct: 14 EEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVGAYKAWLQLKDDLEAAQEMAGEDA 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLESELPGAEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ MK+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVNIQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHLPTGITVNMQDEKSQIQNRASALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|24638154|sp|Q8ZHK4|RF2_YERPE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|115346673|emb|CAL19556.1| peptide chain release factor 2 [Yersinia pestis CO92] Length = 366 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E + + I++ I +Q ++ L + Sbjct: 29 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA 88 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + ++ + + D +C L+++AG+GG+EA Sbjct: 89 VEADDEETFNET-----IAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQ 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 144 DWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 204 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + K IG G Sbjct: 264 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLEDNKSDIGWG-- 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 322 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 364 >gi|317011921|gb|ADU82529.1| peptide chain release factor 1 [Helicobacter pylori Lithuania75] Length = 352 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGSLDEVINPLIAHFQSQ 350 >gi|210134282|ref|YP_002300721.1| peptide chain release factor 1 [Helicobacter pylori P12] gi|238058714|sp|B6JPI0|RF1_HELP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|210132250|gb|ACJ07241.1| peptide chain release factor RF-1 [Helicobacter pylori P12] Length = 352 Score = 243 bits (621), Expect = 2e-62, Method: Composition-based stats. Identities = 168/354 (47%), Positives = 245/354 (69%), Gaps = 9/354 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 + + +++ + R+ E+ +S + + KL ++E ++I I Y + Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEYLSVLEG 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ ++ D E+ +LA+ E+ +E + ELE I LL+PKD +DDK+ LE+RA Sbjct: 61 IKENKELLE----DKELSELAKEELKILEIQKSELETAIKQLLIPKDPNDDKNIYLELRA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+SR+KF Sbjct: 117 GTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVYSRLKF 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G GGQ VN Sbjct: 177 EAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHGGQCVN 236 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PT I V+ EKSQH+N+ +A+K+L+ARLY+ + + + +RK Q+ Sbjct: 237 TTDSAVRITHLPTNISVSMQDEKSQHKNKDKALKILKARLYEKQIEEQQLANAKDRKEQV 296 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 GSGDRSERIRTYN+ Q R+++HRINLTLY LE ++ G +D++INPL+ Q++ Sbjct: 297 GSGDRSERIRTYNYPQNRLSEHRINLTLYSLEEIMLSGSLDEVINPLIAHAQSQ 350 >gi|194289273|ref|YP_002005180.1| peptide chain release factor rf-2 [Cupriavidus taiwanensis LMG 19424] gi|193223108|emb|CAQ69113.1| peptide chain release factor RF-2 [Cupriavidus taiwanensis LMG 19424] Length = 357 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 170/339 (50%), Gaps = 15/339 (4%) Query: 15 RFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + + + + L +E + ++ + ++L + + Sbjct: 25 RLDEVNGLLEDPDVWNNPKRAQDLGKEKKMLEGVVGVLGKLTDDLVGAEELFELAKEEGD 84 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D + + A K + ++ + + D + ++I+AG GG+EA + Sbjct: 85 DDTLESIE-----ADVKGFEAVVADMEFRRMFSGEMDQANAFIDIQAGAGGTEACDWASM 139 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L R Y +Y + +K EVL S+ D G K I G F ++ E+GVHR+ R Sbjct: 140 LLRQYLKYCERKGFKAEVLEESEGDVAGIKSATIKIEGEYAFGYLRTETGVHRLVRKSPF 199 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++SG HTS ++V V PE +V+I D+R+DT RASG+GGQH+N TDSAVRITHIP Sbjct: 200 DSSGGRHTSFSSVFVYPEVDDSFEVEINPADLRVDTYRASGAGGQHINKTDSAVRITHIP 259 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V +++SQH+NR AM +L++RLY+ E ++ E K +G G +IR Sbjct: 260 TGIVVQCQNDRSQHRNRAEAMSMLKSRLYEHEMRKRQAEADKLEAGKTDVGWG---HQIR 316 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y Q RI D R N+ + + VL G +D I L Sbjct: 317 SYVLDQSRIKDLRTNVEMSNTQKVLDGDLDPFIEASLKQ 355 >gi|123969269|ref|YP_001010127.1| peptide chain release factor 1 [Prochlorococcus marinus str. AS9601] gi|229470358|sp|A2BTA9|RF1_PROMS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|123199379|gb|ABM71020.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. AS9601] Length = 364 Score = 243 bits (621), Expect = 3e-62, Method: Composition-based stats. Identities = 142/353 (40%), Positives = 227/353 (64%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E+++++ + KL E + + P++ + +E +D Sbjct: 9 RLKTASESFENLEVQLADPDIANDPKKLESIARERSKLEPLVIDFNKLLDTDKEIEDSKN 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ +D E+ L E++ +E+ EL + LLPKD D++S +LEIRAG GG+E Sbjct: 69 LLKENRNDKEMESLINEELINLEEIKNELIQKTTIALLPKDPRDERSVMLEIRAGAGGNE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWSVKPVSASESDMGGFKELVISVKGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ + T R+ G+GGQ+VN ++A+ Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKIDPIDLEVGTARSGGAGGQNVNKVETAI 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+++ K + + R Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLSQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYNF R TDHR+ + + LE +L G +D++I+ + Q +M+ + Sbjct: 309 EKIRTYNFKDNRTTDHRLG-SNFSLEPILAGQLDEVIDACIAQEQKRMMEDFN 360 >gi|150260100|ref|ZP_01916828.1| peptide chain release factor 2 [Yersinia pestis CA88-4125] gi|153948098|ref|YP_001399866.1| peptide chain release factor 2 [Yersinia pseudotuberculosis IP 31758] gi|218928062|ref|YP_002345937.1| peptide chain release factor 2 [Yersinia pestis CO92] gi|229837575|ref|ZP_04457737.1| Peptide chain release factor 2 [Yersinia pestis Pestoides A] gi|229840798|ref|ZP_04460957.1| Peptide chain release factor 2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842643|ref|ZP_04462798.1| Peptide chain release factor 2 [Yersinia pestis biovar Orientalis str. India 195] gi|229903704|ref|ZP_04518817.1| Peptide chain release factor 2 [Yersinia pestis Nepal516] gi|257168082|ref|NP_670572.2| peptide chain release factor 2 [Yersinia pestis KIM 10] gi|166977375|sp|A7FF38|RF2_YERP3 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|149289508|gb|EDM39585.1| peptide chain release factor 2 [Yersinia pestis CA88-4125] gi|152959593|gb|ABS47054.1| peptide chain release factor 2 [Yersinia pseudotuberculosis IP 31758] gi|229679474|gb|EEO75577.1| Peptide chain release factor 2 [Yersinia pestis Nepal516] gi|229690953|gb|EEO83007.1| Peptide chain release factor 2 [Yersinia pestis biovar Orientalis str. India 195] gi|229697164|gb|EEO87211.1| Peptide chain release factor 2 [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704263|gb|EEO91274.1| Peptide chain release factor 2 [Yersinia pestis Pestoides A] gi|320014035|gb|ADV97606.1| Peptide chain release factor 2 [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 365 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E + + I++ I +Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSTLEEIVTTIDQLEQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + ++ + + D +C L+++AG+GG+EA Sbjct: 88 VEADDEETFNET-----IAELEVLDGKLGQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLKSATVKIIGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|26553517|ref|NP_757451.1| peptide chain release factor 1 [Mycoplasma penetrans HF-2] gi|32171558|sp|Q8EWY5|RF1_MYCPE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|26453523|dbj|BAC43855.1| peptide chain release factor 1 [Mycoplasma penetrans HF-2] Length = 359 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 156/359 (43%), Positives = 231/359 (64%), Gaps = 8/359 (2%) Query: 3 FLSHKQICD----LKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 + ++++ + ++ +F ++ + SV ++ + +PI+ K Y + Sbjct: 1 MIYNEKLYNSLLSMEEKFNDLNKELETEGLSVKRMSEINKSIKETTPIVEKFKEYKRTLN 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +I D+EI +LAQ+E+ + I + E E+ LLLPKD +DDK+ I+E+R Sbjct: 61 DIDSAEKLIK-SEKDNEIIELAQLELSEKKPLIEKYEYELKVLLLPKDPNDDKNVIVEMR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG E+++FVGDLF Y+RYA WKV++L ++ GY I I+G V+S+MK Sbjct: 120 PAAGGDESSIFVGDLFSAYKRYADSLGWKVKMLEVQESSH-GYGFISFMINGENVYSKMK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVPATE+ GRVHTS TVAVLPE E+++ I D++IDT RASG+GGQH+ Sbjct: 179 FESGVHRVQRVPATESKGRVHTSTITVAVLPELEEVELVINNSDLKIDTYRASGAGGQHI 238 Query: 238 NTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVRITHIPTG + KSQ +NR AMK+LRA+L++ + + S RK Q Sbjct: 239 NKTESAVRITHIPTGIFVACQEGKSQIENRETAMKMLRAKLWEKKEEENRKNISDLRKGQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+G+R+E+IRTYN+ Q R+TDHRINLTL KL+ V+ G + +II+ L++ +A + A Sbjct: 299 VGTGERAEKIRTYNYPQNRVTDHRINLTLNKLDNVMLGNLSEIIDSLISHDEAVKMQEA 357 >gi|39938500|ref|NP_950266.1| protein chain release factor A [Onion yellows phytoplasma OY-M] gi|81565140|sp|Q6YRK0|RF1_ONYPE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|39721609|dbj|BAD04099.1| protein chain release factor A [Onion yellows phytoplasma OY-M] Length = 351 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 141/351 (40%), Positives = 218/351 (62%), Gaps = 2/351 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +K ++ +++ + +++ I + + + + P + + Y + E + T Sbjct: 1 MLDRLKIIKQKYQDLQKLLLNEQNINQKIDILKNLSKLEPTVELFNRYLNLETEFTQIQT 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+ LA E I E + +++ LLLP+D D K+ +LEI+ +GG+E Sbjct: 61 ILK-TQQDQELLLLAHQEKDTILSEKKTTLDQLKILLLPQDPFDKKNVVLEIKGASGGNE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF DL R Y +YA +KWKVE+L+ + + GG + ISG+ ++S +K+ESGVHR Sbjct: 120 ANLFAADLLRTYVKYAESKKWKVEILNLNPSIKGGLSSVELLISGKNIYSFLKYESGVHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATEA GR+HTS A V V+PEA E+++ I DIR DT +SG GGQ VNTT SAV Sbjct: 180 VQRVPATEAQGRIHTSTAVVLVVPEAEELELKIDWHDIRTDTFNSSGPGGQSVNTTKSAV 239 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIP+GI + KSQH+N+ +A +L+ R+Y+ E + +RK +G+G+RS Sbjct: 240 RLTHIPSGISVACQEGKSQHENKDKAFTILKTRIYNQMLTAKQEEENKHRKNLVGTGERS 299 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 E+IRTYN+ Q RITDHRI LTL KL+ +++G +D +I PL+ Q + + Sbjct: 300 EKIRTYNYPQNRITDHRIGLTLQKLDIIMEGKLDLVIEPLIHEAQKEQLAQ 350 >gi|255079106|ref|XP_002503133.1| predicted protein [Micromonas sp. RCC299] gi|226518399|gb|ACO64391.1| predicted protein [Micromonas sp. RCC299] Length = 366 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ + E+ R+++ + KL++ ++ ++ + Y + + EE D Sbjct: 9 KKLESSERTHKELTFRLADPDVASDAKEFQKLSKALGELTGVVDMYARYKECQAEEADAR 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D+E+ +A+ E+ A++ E+ ELE ++ LLPKD DDK+ +LEIRAGTGG Sbjct: 69 EMVKDAAGDAEMEAMAREEIAALKGEMDELEEKMTIALLPKDPLDDKNIMLEIRAGTGGD 128 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA ++ GDL+RMY+RYA + W +LSS+ D GGYKEIV I+G V+S +K+E+GVH Sbjct: 129 EAGIWAGDLWRMYQRYAQSKGWSATILSSNAADFGGYKEIVVEINGDSVYSELKWEAGVH 188 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRV TS ATVAV+PE E++V I +DI I + R+ G+GGQ+VN ++A Sbjct: 189 RVQRVPATESQGRVQTSTATVAVMPEVDEVEVKIDDKDIEISSARSGGAGGQNVNKVETA 248 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + + H PTGI + + E++Q +NR+RA ++LRA+L++++ + E + RK Q+GSG R Sbjct: 249 IDLLHKPTGIRVFCTEERTQLKNRIRAFQILRAKLFEIQLEEQQKEIAGRRKAQVGSGAR 308 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R++DHR+ + L+ + G I I Q + + + Sbjct: 309 SEKIRTYNWKDSRVSDHRLG-QNFPLDNFIGGDIGPAIGGCQAMEQQEKLEELN 361 >gi|261820184|ref|YP_003258290.1| peptide chain release factor 2 [Pectobacterium wasabiae WPP163] gi|261604197|gb|ACX86683.1| hypothetical protein Pecwa_0864 [Pectobacterium wasabiae WPP163] Length = 365 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEVIVDTIDQLAQGLEDVAGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEEDDEDTFNETS-----LELDVLENKLGQLEFRRMFSGQYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|157414134|ref|YP_001485000.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9215] gi|238686831|sp|A8G733|RF1_PROM2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|157388709|gb|ABV51414.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9215] Length = 364 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 224/342 (65%), Gaps = 5/342 (1%) Query: 16 FAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 F +E+++++ + KL E + + P++ + +E +D ++ ++ +D Sbjct: 17 FENLEVQLADPDIANDPKKLESIARERSKLEPLVIDFNKLLDTDKEIEDSKNLLKENRND 76 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+ L E++ +E+ EL + LLPKD D++S +LEIRAG GGSEA ++ GDL Sbjct: 77 KEMESLINEELIILEEFKNELIQKTTIALLPKDPRDERSVMLEIRAGAGGSEACIWAGDL 136 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHRVQRVPATE Sbjct: 137 ARMYERYGQKVGWSVKSVSASESDMGGFKELVISVKGDSVYSQLKFEAGVHRVQRVPATE 196 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A+ + H PTG Sbjct: 197 SQGRVHTSTATVAVMPEADPVEVKIDPTDLEIGTARSGGAGGQNVNKVETAIDLLHKPTG 256 Query: 253 I-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I + + E+SQ QNR RAM++LRA+LY+++ K + + R Q+G+GDRSE+IRTYNF Sbjct: 257 IRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLSQVGTGDRSEKIRTYNF 316 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 R TDHR+ + + LE +L G +D++IN + Q +M+ Sbjct: 317 KDNRTTDHRLG-SNFSLEPILAGQLDEVINACIAQEQKRMLE 357 >gi|269103439|ref|ZP_06156136.1| peptide chain release factor 2 [Photobacterium damselae subsp. damselae CIP 102761] gi|268163337|gb|EEZ41833.1| peptide chain release factor 2 [Photobacterium damselae subsp. damselae CIP 102761] Length = 347 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 175/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E A++ ++ I DQ + + L + Sbjct: 10 DAKKERLEEVNAELEQPDVWNEPERAQALGKERASLEAVVETIDQLDQGVDDVEGLLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + ++ E+ ++ + + D C L+++AG+GG+EA Sbjct: 70 VEAEDQETFDEIEPE-----LAELEAKLAKLEFRRMFSGDHDGSDCYLDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K EV+ S+ D G K ISG + ++ E+GVHR+ Sbjct: 125 DWTSMMLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATIRISGEYAYGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE ID+DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 185 RKSPFDSGGRRHTSFASAFVYPEVDDNIDIDINPSDLRIDVYRASGAGGQHVNTTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT +V +++SQH+N+ +AMK L+A+L+++E ++ E+ + K IG G Sbjct: 245 ITHIPTNTVVQCQNDRSQHKNKDQAMKQLKAKLFELEMQKQNAEKQANEDSKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 344 >gi|224437763|ref|ZP_03658710.1| peptide chain release factor 1 [Helicobacter cinaedi CCUG 18818] gi|313144209|ref|ZP_07806402.1| peptide chain release factor 1 [Helicobacter cinaedi CCUG 18818] gi|313129240|gb|EFR46857.1| peptide chain release factor 1 [Helicobacter cinaedi CCUG 18818] Length = 354 Score = 243 bits (620), Expect = 3e-62, Method: Composition-based stats. Identities = 172/358 (48%), Positives = 243/358 (67%), Gaps = 9/358 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ + R+ EI + V +L++E + I PI+ +Y + Sbjct: 1 MLVDKLKPIVARYDEISSLLLSQEILSSVKQLTQLSKEQSDIEPIVQSAKMYFSVLEGIA 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ D E+ +LA+ E+ +E + ELE EI LL+PKD +D K+ LEIRAGT Sbjct: 61 DNRALLE----DKELGELAKEELKELESKKAELEEEIKLLLIPKDPNDSKNIYLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N+ GGYKE++A I G+G +S++K+E Sbjct: 117 GGDEAGIFVGDLFKAYCRYADLQKWKVEIISSSENNVGGYKEVIALIKGQGSYSKLKYEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE +++V+I D++ID R+ G GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVNINPSDLKIDVFRSGGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI V+ EKSQH+N+ +A+K+L+ARLY+ E + + RK Q+GS Sbjct: 237 DSAVRITHIPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQNAQNKEARKTQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYN+ Q R+TDHRI LTLY LE ++ G +D+ INPL+ Q++ +G+ Sbjct: 297 GDRSERIRTYNYPQNRLTDHRIGLTLYSLEEIMLGGLLDECINPLIAHAQSQAMGAVE 354 >gi|254526537|ref|ZP_05138589.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9202] gi|221537961|gb|EEE40414.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9202] Length = 364 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 144/342 (42%), Positives = 224/342 (65%), Gaps = 5/342 (1%) Query: 16 FAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 F +E+++++ + KL E + + P++ + +E +D ++ ++ +D Sbjct: 17 FENLEVQLADPDIANDPKKLESIARERSKLEPLVIDFNKLLDTDKEIEDSKNLLKENRND 76 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+ L E++ +E+ EL + LLPKD D++S +LEIRAG GG+EA ++ GDL Sbjct: 77 KEMESLINEELIILEEFKNELIQKTTIALLPKDPRDERSVMLEIRAGAGGNEACIWAGDL 136 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHRVQRVPATE Sbjct: 137 ARMYERYGQKIGWSVKSVSASESDMGGFKELVISVKGDSVYSQLKFEAGVHRVQRVPATE 196 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A+ + H PTG Sbjct: 197 SQGRVHTSTATVAVMPEADPVEVKIDPTDLEIGTARSGGAGGQNVNKVETAIDLLHKPTG 256 Query: 253 I-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I + + E+SQ QNR RAM++LRA+LY+++ K + + R Q+G+GDRSE+IRTYNF Sbjct: 257 IRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLSQVGTGDRSEKIRTYNF 316 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 R TDHR+ + + LE +L G +D++IN + Q +M+ Sbjct: 317 KDNRTTDHRLG-SNFSLEPILAGQLDEVINACIAQEQKRMLE 357 >gi|320008549|gb|ADW03399.1| peptide chain release factor 1 [Streptomyces flavogriseus ATCC 33331] Length = 358 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 148/352 (42%), Positives = 215/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI+S + Q + Sbjct: 3 EAVEELIGEHADLEKKLADPSVHADQANARKLNKRYAELTPIVSTYRSWKQTGDDIGTAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +EK+ E+ ++ LL+P+D DDK +LEI+AG GG Sbjct: 63 EFAADDPD-------FAAEVKVLEKQREEITEKLRLLLVPRDPSDDKDVLLEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDV 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAVIQACV 347 >gi|332288942|ref|YP_004419794.1| peptide chain release factor 2 [Gallibacterium anatis UMN179] gi|330431838|gb|AEC16897.1| peptide chain release factor 2 [Gallibacterium anatis UMN179] Length = 351 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 180/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + K L +E +++ +++ I Q + L + Sbjct: 14 DNKVERLEEVSAELEQPDVWNDPEKAQALGKERSSLEAVVNTIKSLQQGLDDVDGLLELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A ++ + ++ + + +D C ++++AG+GG+EA Sbjct: 74 IEADDQATFDEAV-----AELDQLEQSLAKLEFRRMFSGANDAADCYVDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 129 DWTEMLLRMYLRWAESKGFKAELMEVSDGDVAGIKSATIRVSGEYAFGWLRTETGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V V PE + D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSNNRRHTSFSAVFVYPEINDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+N+ +AMK L+A+LY++E K+ E+ K IG G Sbjct: 249 ITHMPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELKKKNAEKQALEESKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDARIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 349 >gi|307327906|ref|ZP_07607088.1| peptide chain release factor 1 [Streptomyces violaceusniger Tu 4113] gi|306886424|gb|EFN17428.1| peptide chain release factor 1 [Streptomyces violaceusniger Tu 4113] Length = 359 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 145/352 (41%), Positives = 215/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E R+++ +L + YA ++P+I+ + Q ++ + Sbjct: 3 EAVEELIGEHADLEKRLADPAVHADQREARRLNKRYAELTPVIAAYRAWKQAGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E E+ L + + LL+P+D DDK ILE++AG GG Sbjct: 63 ELAQDDPDFVEEAKEL-------EQSREGLTDRLRLLLVPRDPSDDKDIILEVKAGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E+L ++++D GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEILDANESDLGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEIGPNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QN+ +A+++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREASDA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSERIRTYN+ + RI+DHR+ Y L+ VL G ++ +I + Sbjct: 296 RRSQVRTVDRSERIRTYNYPENRISDHRVGFKAYNLDQVLDGELEPVIQACV 347 >gi|216263966|ref|ZP_03435960.1| peptide chain release factor 1 [Borrelia afzelii ACA-1] gi|215980010|gb|EEC20832.1| peptide chain release factor 1 [Borrelia afzelii ACA-1] Length = 357 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 248/355 (69%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ + +R IE ++ + + K ++ EY + I +K Y+ + Sbjct: 1 MFLEKLNSVTSRIKSIEEKLQDINLIKNQKKYSKIIKEYTYLEKINTKKIEYENILNQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ E+++L + E++ ++K+ LE+EI LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTILEKEEQ-QEMKELIKQELIDLDKKKENLEHEIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDQLLDPLTIELQEQTLKS 354 >gi|213691478|ref|YP_002322064.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|254790863|sp|B7GP74|RF1_BIFLI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|213522939|gb|ACJ51686.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457551|dbj|BAJ68172.1| peptide chain release factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 362 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+ + Q K + + G+ Sbjct: 14 EEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVGAYKTWLQVKDDLAAAQEMAGEDA 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ +E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLEAELPGVEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ MK+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVNVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHLPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|23466257|ref|NP_696860.1| peptide chain release factor 1 [Bifidobacterium longum NCC2705] gi|227546609|ref|ZP_03976658.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239621640|ref|ZP_04664671.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|312134004|ref|YP_004001343.1| prfa [Bifidobacterium longum subsp. longum BBMN68] gi|317482079|ref|ZP_07941103.1| peptide chain release factor 1 [Bifidobacterium sp. 12_1_47BFAA] gi|322689793|ref|YP_004209527.1| peptide chain release factor [Bifidobacterium longum subsp. infantis 157F] gi|322691739|ref|YP_004221309.1| peptide chain release factor [Bifidobacterium longum subsp. longum JCM 1217] gi|81753501|sp|Q8G3P5|RF1_BIFLO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|23327005|gb|AAN25496.1| peptide chain release factor 1 [Bifidobacterium longum NCC2705] gi|227212926|gb|EEI80805.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239515515|gb|EEQ55382.1| peptide chain release factor 1 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291516325|emb|CBK69941.1| bacterial peptide chain release factor 1 (bRF-1) [Bifidobacterium longum subsp. longum F8] gi|311773307|gb|ADQ02795.1| PrfA [Bifidobacterium longum subsp. longum BBMN68] gi|316916438|gb|EFV37836.1| peptide chain release factor 1 [Bifidobacterium sp. 12_1_47BFAA] gi|320456595|dbj|BAJ67217.1| peptide chain release factor [Bifidobacterium longum subsp. longum JCM 1217] gi|320461129|dbj|BAJ71749.1| peptide chain release factor [Bifidobacterium longum subsp. infantis 157F] Length = 362 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+ + Q K + + G+ Sbjct: 14 EEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVGAYKAWLQVKDDLAAAQEMAGEDA 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ +E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLEDELPGVEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ MK+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVNVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHLPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|123443573|ref|YP_001007546.1| peptide chain release factor 2 [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225120|sp|A1JPL5|RF2_YERE8 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|122090534|emb|CAL13403.1| peptide chain release factor 2 [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 365 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I++ I DQ + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEEIVTTIDQLDQGMDDVTGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + ++ + + D +C L+++AG+GG+EA Sbjct: 88 IEADDEETFNEAV-----AELDILDGKLGQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAEAKGFKTEIIEESDGDVAGLKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQMLEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|297157199|gb|ADI06911.1| peptide chain release factor 1 [Streptomyces bingchenggensis BCW-1] Length = 356 Score = 243 bits (619), Expect = 4e-62, Method: Composition-based stats. Identities = 146/349 (41%), Positives = 215/349 (61%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E R+++ + L + YA ++PI+ + Q ++ + Sbjct: 3 EAVEELIGEHADLEKRLADPAVHADQREATRLGKRYAELTPIVGTYRSWKQTGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + ++ E EL + + LL+P+D DDK ILE++AG GG Sbjct: 63 ELAQLDADFADEVKEL-------EARREELTDRLRLLLVPRDPSDDKDVILEVKAGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL RMY RYA WK E++ ++++D GGYK++ + G+GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDANESDLGGYKDVQVAVKAKSNAEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEISQNDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QN+ +A+++LR+RL ++ E S R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVSCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREASDARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSERIRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 QVRTVDRSERIRTYNFPENRISDHRVGFKAYNLDQVLDGELDPVIQACV 344 >gi|285017297|ref|YP_003375008.1| peptide chain release factor 1 (rf-1) protein [Xanthomonas albilineans GPE PC73] gi|283472515|emb|CBA15020.1| probable peptide chain release factor 1 (rf-1) protein [Xanthomonas albilineans] Length = 361 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 165/340 (48%), Positives = 233/340 (68%), Gaps = 10/340 (2%) Query: 24 SESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 S+ V + + E+A + P+ + ++ K + D E+R+LA+ Sbjct: 24 SDPEVVSDHQRFRDYSREFAQLQPVATALAEETAAKANLASAEAMRA----DPELRELAE 79 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E+ A + + +L+ ++ LL+P+D DD + LE+RAGTGG EAA+F GDLFRMY RYA Sbjct: 80 EEIAAAQAHLADLDAQLALLLVPRDPRDDGNLFLEVRAGTGGDEAAIFAGDLFRMYARYA 139 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + WKVEV S + + GGYKEIVA I GRG +S++KFESG HRVQRVPATE+ GR+HTS Sbjct: 140 ERQGWKVEVESDNPGEHGGYKEIVARIVGRGAYSKLKFESGTHRVQRVPATESQGRIHTS 199 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 AATVA++PEA +++ + D++IDT R+SG+GGQHVN T+SA+RITH+P+G++V + Sbjct: 200 AATVAIIPEADDVEEIAVNPADLKIDTFRSSGAGGQHVNKTESAIRITHVPSGVVVECQT 259 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITD 318 E+SQH NR +A+K L+A+L D ER + A + +RKLQ+GSGDRS+RIRTYNF QGRITD Sbjct: 260 ERSQHANRDKALKRLKAQLLDAERNKQAAAEAQDRKLQVGSGDRSQRIRTYNFPQGRITD 319 Query: 319 HRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 HR+ LTLY L +V++G +D +I L HQ + S+ Sbjct: 320 HRVEGLTLYDLPHVIEGDLDALIERLSHEHQVDALARLSD 359 >gi|317125570|ref|YP_004099682.1| bacterial peptide chain release factor 1 (bRF-1) [Intrasporangium calvum DSM 43043] gi|315589658|gb|ADU48955.1| bacterial peptide chain release factor 1 (bRF-1) [Intrasporangium calvum DSM 43043] Length = 359 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 148/364 (40%), Positives = 221/364 (60%), Gaps = 19/364 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + + + +A++E R+++ L + YAA+ P ++ + + + + Sbjct: 1 MLESVQAILDEYADLEARLADPAVHADQDLVRTLNKRYAALGPTVASARAWQTARDDVEA 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + EV A+E + E E + L+P+D DDD+ ILE++AG G Sbjct: 61 ARELGAED-------AAFAAEVPALEGVLAETEEHLLRQLVPRDPDDDRDVILEVKAGEG 113 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG--------VF 173 G E+ALF GDL RMY RYA R W+ V ++++D GGYK++ +I RG + Sbjct: 114 GEESALFAGDLLRMYLRYAERRGWRTVVEDATESDLGGYKDVRVSIRSRGHQPGPGEAPW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVP TE+ GRVHTSAA V V+PEA E++V I D+RID R+SG G Sbjct: 174 ARLKYEGGVHRVQRVPVTESQGRVHTSAAGVLVMPEAEEVEVTIDPHDLRIDVYRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++V +EKSQ QN+ A++VLRARL+ + + E SA Sbjct: 234 GQSVNTTDSAVRITHLPTGLVVSCQNEKSQLQNKEAALRVLRARLHQLAKDEADAEASAA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ + DRSERIRTYNF + RI+DHR Y L++V+ G +D ++ + A +A + Sbjct: 294 RRSQVRTVDRSERIRTYNFPENRISDHRTGYKSYNLDHVIDGDLDPVVQSAIDADEAAKL 353 Query: 353 GSAS 356 + + Sbjct: 354 AALA 357 >gi|297828437|ref|XP_002882101.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] gi|297327940|gb|EFH58360.1| hypothetical protein ARALYDRAFT_904175 [Arabidopsis lyrata subsp. lyrata] Length = 410 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 162/359 (45%), Positives = 245/359 (68%), Gaps = 3/359 (0%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +++ +++R A ++ +++ S + + + +E + + I+ K++E Sbjct: 49 LIKIMDQRLSAIEHRNALLQKLINQPEYSPEEFSRANKELRKLRDSMFLINDLRAKQKEI 108 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L +++ + + D ++ D+A E+ +E + L+ + LLPKD D++ CILE+RAG Sbjct: 109 DGLKSLVSESSDDKDMLDMAVSELDEAVEEEKRLQTLLLKSLLPKDEADERDCILEVRAG 168 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+FRMYERY+ + WK +++ +++D GYKE A I G V+ ++KFE Sbjct: 169 TGGEEASLFAMDIFRMYERYSQKKAWKFDIVDITESDMKGYKEASAAICGASVYGKLKFE 228 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG+HRVQR+P TE SGR+HTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQH NT Sbjct: 229 SGIHRVQRIPITEKSGRIHTSAISVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQHANT 288 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRI H+PTG+MV+ E+SQH NR +A+KVL ARLY++ER R+ + RS R QIG Sbjct: 289 TNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVLCARLYEIERLRIQSSRSKLRSDQIG 348 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRS RIRTYNF QGR+TDHR+ +TL+ +E ++QG +D I+ LL + I S S Sbjct: 349 SGDRSGRIRTYNFPQGRVTDHRVGITLHAIEDMMQGEILDSFIDALLLRQEMDAIASFS 407 >gi|254387523|ref|ZP_05002762.1| peptide chain release factor 1 [Streptomyces clavuligerus ATCC 27064] gi|294815090|ref|ZP_06773733.1| Peptide chain release factor 1 [Streptomyces clavuligerus ATCC 27064] gi|326443452|ref|ZP_08218186.1| peptide chain release factor 1 [Streptomyces clavuligerus ATCC 27064] gi|197701249|gb|EDY47061.1| peptide chain release factor 1 [Streptomyces clavuligerus ATCC 27064] gi|294327689|gb|EFG09332.1| Peptide chain release factor 1 [Streptomyces clavuligerus ATCC 27064] Length = 356 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 147/349 (42%), Positives = 215/349 (61%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + DL A +E ++++ KL++ YA ++PI+ + ++ Sbjct: 3 EAVEDLIGEHAGLEKQLADPSVHADQANARKLSKRYAELTPIVGTYRSWKLTGEDIDTAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E+ EL ++ LL+P+D DDK ILE++AG GG Sbjct: 63 ELAADDPD-------FAAEVKELEQRREELTEKLRLLLVPRDPSDDKDVILEVKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVFSRM 176 E+ALF GDL RMY RYA WK E+++S++++ GGYK++ + +GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIINSTESELGGYKDVQVAVKTKGNAEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA EIDV+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEIDVEINPNDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E + R+ Sbjct: 236 VNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEKEAADARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 QVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAVIQACV 344 >gi|123966944|ref|YP_001012025.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9515] gi|229470357|sp|A2BYQ7|RF1_PROM5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|123201310|gb|ABM72918.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9515] Length = 364 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 228/354 (64%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ F +E+++++ + KL +E A + P++ + +E D Sbjct: 9 RLKTASKSFVNLEMQLADPDIANNPKKLELIAKERAKLEPLVLDFNQLLDTDKEIDDSRQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D+ +D ++ L E+ +E L ++ LLPKD D++S +LEIRAG GG+E Sbjct: 69 LLKDNRNDKDMELLINEELCNLEVLKNSLIQKVTIALLPKDPRDERSVMLEIRAGAGGNE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+S++D GG+KE+V +I G V+S++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWSVKPISASESDMGGFKELVISIKGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A+ Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKIDPSDLEIGTARSGGAGGQNVNKVETAI 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+++ K ++ + R +Q+G+GDRS Sbjct: 249 DLIHKPTGIRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANDKERSQRLMQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYNF R TDHR+ + + LE +L G +D++I+ + Q +++ +E Sbjct: 309 EKIRTYNFKDNRTTDHRLG-SNFALEPILAGQLDEVIDACIAQEQKRIMEDFNE 361 >gi|289706369|ref|ZP_06502727.1| peptide chain release factor 1 [Micrococcus luteus SK58] gi|289556864|gb|EFD50197.1| peptide chain release factor 1 [Micrococcus luteus SK58] Length = 369 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 147/369 (39%), Positives = 209/369 (56%), Gaps = 16/369 (4%) Query: 1 MVFLSHKQ--ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQK 55 M ++ + L E+ R+S+ +L +A + +++ + Sbjct: 1 MFDSEQRREAVDRLLAEHRELTARLSDPAVHQDPALARRLNRRFAELGAVVTAHRAWSAA 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +E D + + D+ + A E E + LL+P+D DD + ILE Sbjct: 61 VEELADARELAAAGDDDAAAFAAEVPGLEAAEAEAA---ERLRRLLIPRDPDDARDVILE 117 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SG 169 I+ G GG EAALF GDL RMY RYA R WK EVLS++ +D GGYK++ + Sbjct: 118 IKGGEGGEEAALFAGDLLRMYLRYAESRGWKTEVLSATHSDLGGYKDVHVAVRGSAADPA 177 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMR 228 GV++R+KFE GVHRVQRVP TE+ GR+HTSAA V VLPE +V + D+++D R Sbjct: 178 DGVYARLKFEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDAPDEVHLDPNDLKVDVFR 237 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG GGQ VNTTDSAVR+TH+PTGI+V+ +EKSQ QNR A++VLR+RL + +R Sbjct: 238 SSGPGGQSVNTTDSAVRLTHLPTGIVVSMQNEKSQIQNREAALRVLRSRLLERQRAEQDA 297 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 E SA R Q+ + DRSERIRTYNF + RI DHR + L+ VL G ++ +I L Sbjct: 298 EDSAARAAQVRTMDRSERIRTYNFPENRIADHRTGYKAHNLDAVLDGDLEAVIASCLALD 357 Query: 348 QAKMIGSAS 356 + + + + Sbjct: 358 EERRLAALG 366 >gi|296454711|ref|YP_003661854.1| peptide chain release factor 1 [Bifidobacterium longum subsp. longum JDM301] gi|296184142|gb|ADH01024.1| peptide chain release factor 1 [Bifidobacterium longum subsp. longum JDM301] Length = 362 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+ V D KL +A + I+ + Q K + + G+ Sbjct: 14 EEYQSIEEQMASPEVVSNPDKLRKLGRRHAELGAIVGAYKTWLQVKDDLAAAQEMAGEDA 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ + E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLEAELPDAEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ MK+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVNVQSENTTELGGVKDVQIAIRAKGTPAPEDGVWASMKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHLPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|227832889|ref|YP_002834596.1| peptide chain release factor RF-1 [Corynebacterium aurimucosum ATCC 700975] gi|262182622|ref|ZP_06042043.1| peptide chain release factor RF-1 [Corynebacterium aurimucosum ATCC 700975] gi|254790875|sp|C3PFQ4|RF1_CORA7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|227453905|gb|ACP32658.1| peptide chain release factor RF-1 [Corynebacterium aurimucosum ATCC 700975] Length = 358 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 213/358 (59%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M++ + KL++ YA + PI++ Q +Q+ D + Sbjct: 8 VDDIISEYQGIEMQMADPEVAGDQSQFRKLSKRYAELRPIVAVNEELVQARQDLADAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D +E + +LE ++ LL P+D D + I+EI+AG GG EA Sbjct: 68 AYEDHEFQSEVD-------RLEPLVVQLEEQLADLLAPRDEHDSEDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMYER+A ++ EVL +++D GG K++ + + +S KFE Sbjct: 121 ALFAGDLARMYERFADKAGFQWEVLGLNESDLGGVKDMSISFKSKTPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE EID +I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPEEIDSVNIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ E R Q+ Sbjct: 241 TDSAVRITHLPTGLVVTCQKERSQIQNKARALQVLQARLDQMEREAREAEAGEQRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYN+ + RITDHRI L+ VL G + D+I L +A+ + + Sbjct: 301 TMDRSERIRTYNWPENRITDHRIGYKANNLDSVLDGDMQDLIEALQAQERAERLEAEG 358 >gi|21223720|ref|NP_629499.1| peptide chain release factor 1 [Streptomyces coelicolor A3(2)] gi|256785187|ref|ZP_05523618.1| peptide chain release factor 1 [Streptomyces lividans TK24] gi|289769080|ref|ZP_06528458.1| peptide chain release factor 1 [Streptomyces lividans TK24] gi|20139352|sp|Q9K4E4|RF1_STRCO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|8568782|emb|CAB94531.1| peptide chain release factor 1 (RF-1) [Streptomyces coelicolor A3(2)] gi|289699279|gb|EFD66708.1| peptide chain release factor 1 [Streptomyces lividans TK24] Length = 358 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 149/352 (42%), Positives = 216/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVEELVAEHADLEKKLADPSVHSDQANARKLNKRYAELTPIVATFRSWKQTGDDMETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV ++K+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 EFAADDPD-------FAAEVKELDKQRDELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERIGWKTEIIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA EIDV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEIDVEINPNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITHIPTG++ +EKSQ QN+ +AM++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEKEAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDSVIQACV 347 >gi|124267958|ref|YP_001021962.1| peptide chain release factor 2 [Methylibium petroleiphilum PM1] gi|124260733|gb|ABM95727.1| bacterial peptide chain release factor 2 (bRF-2) [Methylibium petroleiphilum PM1] Length = 355 Score = 242 bits (618), Expect = 5e-62, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R +E+ + + + L E ++ ++ I+ ++ + +L+ + Sbjct: 18 DEKSRRLSEVNAALEDPTVWNDPKNAQALGREKKSLETVVDTIASLERNLADNAELYEMS 77 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + E L + ++ +LE + + + D +C ++I+AG GG+EA Sbjct: 78 KEE-GDEDGLRAIEAETLGLAAQVEQLE----FRRMFSNPADPSNCFIDIQAGAGGTEAC 132 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +Y + +K + ++ D G K + G F ++ E+GVHR+ Sbjct: 133 DWASMLLRQYLKYCERKGFKATIEDETEGDTAGIKSATIKVEGDYAFGHLRTETGVHRLV 192 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 193 RKSPFDSSGGRHTSFASLFVYPEVDDSIEIEINPADVRTDTFRASGAGGQHINKTDSAVR 252 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A K LR+RLYD E ++ E+ + K +G G Sbjct: 253 LTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYDHEMRKRQEEQQKLEDTKTDVGWG-- 310 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 311 -HQIRSYVLDNSRIKDLRTNVEISNTQKVLDGDLDAFIEASLKQ 353 >gi|300718200|ref|YP_003743003.1| peptide chain release factor 2 [Erwinia billingiae Eb661] gi|299064036|emb|CAX61156.1| Peptide chain release factor 2 [Erwinia billingiae Eb661] Length = 348 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + D L +E +++ I+ + +Q ++ + L + Sbjct: 11 DAKKERLEEVNAELEQPDVWNEPDRAQALGKERSSLEAIVDTLDQMEQGLEDVRGLLELA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + E+ + + D C ++I+AG+GG+EA Sbjct: 71 VEADDEETFNET-----IAELDVLEKKLGELEFRRMFSGEYDSADCYIDIQAGSGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L RMY R+A + +K E++ S+ + G K I G F ++ E+GVHR+ Sbjct: 126 DWAGMLVRMYLRWAEAKGFKTEIIEESEGEVAGTKSATLRIIGDYAFGWLRTETGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 186 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT + +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 246 ITHLPTNTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQSLEDNKSDIGWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 304 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 346 >gi|108804488|ref|YP_644425.1| peptide chain release factor 1 [Rubrobacter xylanophilus DSM 9941] gi|119361598|sp|Q1AVG5|RF1_RUBXD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|108765731|gb|ABG04613.1| bacterial peptide chain release factor 1 (bRF-1) [Rubrobacter xylanophilus DSM 9941] Length = 364 Score = 242 bits (618), Expect = 6e-62, Method: Composition-based stats. Identities = 150/351 (42%), Positives = 207/351 (58%), Gaps = 5/351 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R+ E+ +S+ + Y ++ E++ + + + +EE++ +I Sbjct: 10 KETVARYRELTEELSDPAIFNDQRRYAEVAREHSRMRRGAELSERFLEALREEREARELI 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 S E A A + E + L+ DD K ILEIRAGTGG EAA Sbjct: 70 PAAESAEEREFFAGEAREAGRRAGELAEEIRSELIDRDPNDD-KDVILEIRAGTGGDEAA 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF GDL+ MY RYA ++ VL +S + GGYKEI+ I G G +S K E G HRVQ Sbjct: 129 LFAGDLYEMYARYADRLGFRHRVLDASPAEVGGYKEIIVEIEGDGAYSVFKHEGGTHRVQ 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE+ GR+HTS ATVAVLPEA E++V+I D+ ID R+SG GGQ VNTTDSAVRI Sbjct: 189 RVPKTESQGRIHTSTATVAVLPEAEEVEVEINPNDLEIDVYRSSGPGGQSVNTTDSAVRI 248 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTG++V +EKSQ QN+ +A+++LR+RL + E + R Q GSGDRS + Sbjct: 249 THKPTGLVVTCQNEKSQLQNKEQALRILRSRLLEREMRERQEREGQMRLAQFGSGDRSAK 308 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 IRTYNF QGRITDHR+ LT++ LE VL G +++ L +A + +++ Sbjct: 309 IRTYNFPQGRITDHRVGLTVHNLEAVLGGELEEFTKALAAKERADRLAASA 359 >gi|119025459|ref|YP_909304.1| peptide chain release factor 1 [Bifidobacterium adolescentis ATCC 15703] gi|154486885|ref|ZP_02028292.1| hypothetical protein BIFADO_00718 [Bifidobacterium adolescentis L2-32] gi|229470348|sp|A1A0I9|RF1_BIFAA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118765043|dbj|BAF39222.1| peptide chain release factor 1 [Bifidobacterium adolescentis ATCC 15703] gi|154084748|gb|EDN83793.1| hypothetical protein BIFADO_00718 [Bifidobacterium adolescentis L2-32] Length = 362 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 204/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+E D KL +A + I+S + Y Q K + + + + Sbjct: 14 EEYHNIEQQMAEPEVASNPDKMRKLGRRHAELGAIVSAYTAYKQVKDDLEAAREMASEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLEGELPAAEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYMRYAEKRGWSVTVQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI V EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHIPTGITVNMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 361 >gi|326403021|ref|YP_004283102.1| peptide chain release factor 1 [Acidiphilium multivorum AIU301] gi|325049882|dbj|BAJ80220.1| peptide chain release factor 1 [Acidiphilium multivorum AIU301] Length = 352 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 168/347 (48%), Positives = 233/347 (67%), Gaps = 5/347 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + R E+ ++ + ++ + E A I P+ +I + ++ + Sbjct: 1 MTLEQKLDRIVLRAEELRAMLAAGVDGERFVAASRELAEIEPVEQQILLLRAAERARDEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 D E+R+LA E+ ++ + + LE+EI LLP+D D++ ILEIR GG Sbjct: 61 EA----ARVDPELRELADAELDSLRETLPRLEHEIRLALLPRDAADERPAILEIRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +LF Y RYA LR W+ E+L ++ + GG +E +A I+GR VF+R+KFESGV Sbjct: 117 DEAALFAAELFAAYRRYADLRGWRFEILDYTETELGGLREGIAEITGRAVFARLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE GR+HTS TVAVLPEA ++DV++ D+RID RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATETQGRIHTSTVTVAVLPEAEDVDVEVNEADLRIDVFRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQH+NR +AMK+LRARLY+ R A R+A+RK Q+G+GD Sbjct: 237 AVRITHLPTGIVVAMQEERSQHKNRAKAMKILRARLYEQTRAAAAAGRAADRKSQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 RSERIRTYNF QGR+TDHRINLTL+K++ V+ G D+II+ L Q Sbjct: 297 RSERIRTYNFPQGRVTDHRINLTLHKIDRVMLGEFDEIIDALTEEDQ 343 >gi|116671165|ref|YP_832098.1| peptide chain release factor 1 [Arthrobacter sp. FB24] gi|166223528|sp|A0JY78|RF1_ARTS2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|116611274|gb|ABK03998.1| bacterial peptide chain release factor 1 (bRF-1) [Arthrobacter sp. FB24] Length = 357 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 144/362 (39%), Positives = 210/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L + A I+ ++ + KL A ++ I+ ++ + + Sbjct: 3 ESVQGLLDEHAAIQAQLGDPAVYADQKLARKLGRRSAQLNGIVEAYHRWESIRDDLAAAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E ++E +L LL+P+D DD ++ ILE++ G GG Sbjct: 63 EMADE---DPEFAAEVPELEASLETAAAKL----RRLLIPRDPDDARNVILEVKGGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF DL RMY RYA R WK E++S++++D GGYK++ + GV++R+K Sbjct: 116 EAALFAADLLRMYSRYAESRGWKTELISATESDLGGYKDVQMAVKGNSNDPAEGVYARLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVP TE+ GR+HTSAA V VLPE E + +I D++ID R+SG GGQ Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDEPEELEINQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ +++++ E SA RK Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARILAHQQEQIDAENSAQRKS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYN+ + RI DHR Y L+ V+ G ++ +I + + + + Sbjct: 296 QIRTMDRSERIRTYNYPENRIADHRTGYKAYNLDQVMNGDLEPVIQSAIEMDEQARLDAI 355 Query: 356 SE 357 E Sbjct: 356 GE 357 >gi|297243816|ref|ZP_06927746.1| protein chain release factor A [Gardnerella vaginalis AMD] gi|296888237|gb|EFH26979.1| protein chain release factor A [Gardnerella vaginalis AMD] Length = 365 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 202/355 (56%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + +IE RM DA KL +A + I++ Y Q + + + + D Sbjct: 17 EEYRDIESRMGSPEVASNPDAIRKLGRRHAELGSIVNAYLNYKQLCDDFEAANEMASD-- 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + A+ + +L L+P+D DD I+EI+AGTGG EAALF G Sbjct: 75 -DPDFAEEAKRLEEQLPAAKEKL----RTALIPRDPDDACDMIMEIKAGTGGEEAALFAG 129 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W + S + + GG K++ I GV++ MK+E GVH Sbjct: 130 DLLRMYMRYAEKRGWTTVIQSENSTELGGVKDVQLAIRAKGTPAPEDGVWASMKYEGGVH 189 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 190 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 249 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 250 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 309 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + A Sbjct: 310 DRSERIRTYNFPENRIVDHRTNYKAYNLDQVLDGDLQPVIDSDIQADEADRLAQA 364 >gi|212716435|ref|ZP_03324563.1| hypothetical protein BIFCAT_01359 [Bifidobacterium catenulatum DSM 16992] gi|212660688|gb|EEB21263.1| hypothetical protein BIFCAT_01359 [Bifidobacterium catenulatum DSM 16992] Length = 383 Score = 242 bits (617), Expect = 6e-62, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 205/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+E D KL +A + I+S + Y Q K + + + + Sbjct: 35 EEYHNIEQQMAEPEVASDPDKMRKLGRRHAELGVIVSAYTAYKQVKDDLEAAKEMASEDP 94 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 95 DFAEEAK-------RLESELPAAEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 147 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V V S + + GG K++ I GV++ +K+E GVH Sbjct: 148 DLLRMYMRYAEKRGWSVAVQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVH 207 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 208 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDQKDLKIDIFMSSGPGGQSVNTTY 267 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A + + R Q+ S Sbjct: 268 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEEEAAQAADMRHSQVRSL 327 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 328 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 382 >gi|224531646|ref|ZP_03672278.1| peptide chain release factor 1 [Borrelia valaisiana VS116] gi|224511111|gb|EEF81517.1| peptide chain release factor 1 [Borrelia valaisiana VS116] Length = 357 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 249/355 (70%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ +E ++ + + K+ +EY + I +K Y++ + Sbjct: 1 MFLEKLNSATSKIKSLEEKLQDINLIKNQKEYSKIIKEYTHLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ E+++L + E++ ++K+ ++E++I LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTILEKEEQ-QEMKELIKQELIDLDKKKEDIEHQIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E +++I +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIEINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PT I+V +E+SQH+N+ +AMK+LRARLY+ E + +RS+NRK Q+GS Sbjct: 240 DSAVRITHLPTRIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSSNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDPLLDPLTIELQEQTLKS 354 >gi|304373116|ref|YP_003856325.1| Peptide chain release factor 1 [Mycoplasma hyorhinis HUB-1] gi|304309307|gb|ADM21787.1| Peptide chain release factor 1 [Mycoplasma hyorhinis HUB-1] Length = 361 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 156/362 (43%), Positives = 235/362 (64%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + +K ++ + ++ + ++ Y K+ +E A+I I+ Y ++ Sbjct: 1 MEKSMLNSLNSIKEKYEHLSNQLLDPEIVSNIKEYTKINKELASIEDIVLAFKNYLKQVS 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D ++ + D EI +LA+ E+ K+I E+E E+ LLLPKD +DDK+ I+EIR Sbjct: 61 IIEDSKKLLQEK--DVEIHNLAKEEITLATKKIEEIEKELVVLLLPKDENDDKNVIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +FVGDL++MY ++A +KW V+VL+SS GG+ +IV +SG V+S++K Sbjct: 119 GAAGGDEANIFVGDLYKMYLKWAESKKWSVKVLNSSLASAGGFTQIVFLVSGDKVYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQR+P TE GRVHTS TV ++PE +I VDI +D+RIDT R+SG+GGQ Sbjct: 179 FESGVHRVQRIPETETQGRVHTSTTTVTIMPEVDDDIQVDIKAQDLRIDTYRSSGAGGQS 238 Query: 237 VNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTG++ + +SQ N+ A+K+L++++Y++E ++ RKL Sbjct: 239 VNTTDSAVRITHIPTGLVSTSQDGRSQIANKELALKILKSKIYNLEVEKKQAIEGQFRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 GSG RSE+IRTYN+ Q R+TDHRI+ + L+ V+ G +D II+ LL +A+ I ++ Sbjct: 299 A-GSGARSEKIRTYNYPQDRVTDHRISFSTS-LKNVIVGNLDPIIDALLAEDKAERIATS 356 Query: 356 SE 357 E Sbjct: 357 YE 358 >gi|282861117|ref|ZP_06270182.1| peptide chain release factor 1 [Streptomyces sp. ACTE] gi|282563775|gb|EFB69312.1| peptide chain release factor 1 [Streptomyces sp. ACTE] Length = 358 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 148/352 (42%), Positives = 216/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++S+ KL + YA ++P+IS + + + + Sbjct: 3 EAVEELIGEHADLEKKLSDPSVHADQANARKLNKRYAELTPVISTYRAWKRTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +EK+ E+ ++ LL+P+D DDK +LEI+AG GG Sbjct: 63 EFAADDPD-------FAAEVKELEKQREEITEKLRLLLVPRDPSDDKDVLLEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGNGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E S Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEAAEQEASDV 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAVIQACV 347 >gi|91775149|ref|YP_544905.1| peptide chain release factor 2 [Methylobacillus flagellatus KT] gi|91709136|gb|ABE49064.1| bacterial peptide chain release factor 2 (bRF-2) [Methylobacillus flagellatus KT] Length = 354 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 115/344 (33%), Positives = 185/344 (53%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + KL +E + +++ ++ + ++ ++L + Sbjct: 17 DTKQQRLEEVSQLLEDPNIWNDNERSQKLGKERRELEFVVNSLTEVENGVRDSRELFEMA 76 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D +R + A + + ++ E+ + + D +C L+I+AG+GG+EA Sbjct: 77 REENDDDTLRSID-----ADTQALEKIVAEMEFRRMFSHPMDQNNCFLDIQAGSGGTEAQ 131 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY + +KVEVL S+ D G K ISG + ++ ESGVHR+ Sbjct: 132 DWASMLLRMYLRYCENKGFKVEVLEESEGDVAGIKSASLKISGDYAYGFLRTESGVHRLV 191 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + V +I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 192 RKSPFDSGNRRHTSFASVFVYPEVDDSIVVEINPADLRIDTYRASGAGGQHINKTDSAVR 251 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT +V +++SQH+N+ AM +L+A+LY +E ++ E+ A K IG G Sbjct: 252 ITHLPTNTVVQCQNDRSQHRNKDEAMNMLKAQLYALELRKRNEEKQAMEDAKTDIGWG-- 309 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I+ L Sbjct: 310 -HQIRSYVLDQSRIKDLRTNVEVGNTQGVLDGDLDPFISESLKQ 352 >gi|292900474|ref|YP_003539843.1| peptide chain release factor 2 [Erwinia amylovora ATCC 49946] gi|291200322|emb|CBJ47450.1| peptide chain release factor 2 [Erwinia amylovora ATCC 49946] Length = 365 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + D L +E +A+ ++ + Q ++ L + Sbjct: 28 DAKKERLQEVNAELEQPDVWNEPDRAQALGKERSALEAVVETLDQMTQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + +K + + + D C ++I+AG+GG+EA Sbjct: 88 VEAEDEDTFNEAVAELDGLDKKLGE-----LEFRRMFSGEYDSADCYMDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD + G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAEAKGFKTEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++V + PE ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSVFIYPEVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +A K LRA+LY+ E ++ ++ + + K IG G Sbjct: 263 ITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQKKNADKQTAEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R ++ + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 363 >gi|225350887|ref|ZP_03741910.1| hypothetical protein BIFPSEUDO_02461 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158343|gb|EEG71585.1| hypothetical protein BIFPSEUDO_02461 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 362 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 142/353 (40%), Positives = 205/353 (58%), Gaps = 20/353 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M+E D KL +A + I+S + Y Q K + + + + Sbjct: 14 EEYHNIEQQMAEPEVASDPDKMRKLGRRHAELGVIVSAYTAYKQVKDDLEAAKEMASEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +E +E E+ +E ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 74 DFAEEAK-------RLESELPAVEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYMRYAEKRGWTVTLQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDQKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A + + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEEEAAQAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLA 359 >gi|317405230|gb|EFV85568.1| peptide chain release factor 2 [Achromobacter xylosoxidans C54] Length = 386 Score = 242 bits (617), Expect = 7e-62, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + L E A+ ++ ++ + +L + Sbjct: 49 DAKAERLQVVNAELEDPAVWNDPKHAQDLGREKKALEDVVETLTGLGTGLADSNELFELA 108 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N D+ + +++ ++++ LE + + + D +C L+I+AG GG+EA Sbjct: 109 AADNDDA-TLESIELDANGFQEKLESLE----FRRMFSNPADPLNCFLDIQAGAGGTEAQ 163 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K EVL S+ + G K + G F ++ E+GVHR+ Sbjct: 164 DWASMLLRQYLKYAERKGFKAEVLEESEGEVAGIKSATIKLEGEYAFGYLRTETGVHRLV 223 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE +V++ D+R+DT RASG+GGQH+N TDSAVR Sbjct: 224 RKSPFDSSGGRHTSFASVFVYPEVDDSFEVEVNPADLRVDTYRASGAGGQHINKTDSAVR 283 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +++SQH+NR AM++L+++LY++E + E+ + K +G G Sbjct: 284 LTHIPTGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMAEQQKLEDSKTDVGWG-- 341 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 342 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 384 >gi|312139166|ref|YP_004006502.1| peptide chain release factor 1 prfa [Rhodococcus equi 103S] gi|325673529|ref|ZP_08153220.1| peptide chain release factor RF1 [Rhodococcus equi ATCC 33707] gi|311888505|emb|CBH47817.1| peptide chain release factor 1 PrfA [Rhodococcus equi 103S] gi|325555550|gb|EGD25221.1| peptide chain release factor RF1 [Rhodococcus equi ATCC 33707] Length = 359 Score = 242 bits (617), Expect = 8e-62, Method: Composition-based stats. Identities = 145/356 (40%), Positives = 211/356 (59%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E ++++ A K + +A ++P+++ + + + + Sbjct: 10 IDDILAEHAGLEQQLADPALHNDPSAARKAGKRFAELAPVMATYAKLKSAQDDLDAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + E+ A+E+ + EL+ + LL P+D D +LE+++G GG E+ Sbjct: 70 -------AADDAAFAAEIPALEETVTELDKTLTDLLAPRDPHDGDDVVLELKSGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF DL RMY RYA W+VE+L ++ +D GGYK+ +I GV+SR+KFE Sbjct: 123 ALFASDLARMYVRYAERAGWRVEILDATVSDLGGYKDATISIKSKGDVRDGVWSRLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V + PE E++ I D+RID R+SG GGQ VNT Sbjct: 183 GVHRVQRVPVTESQGRVHTSAAGVLIYPEPEEVEEVQIDETDLRIDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + E SA R+ Q+ Sbjct: 243 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQAAAEEAADAEASAGRQSQVR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RITDHRI + L+ VL G ++ +++ L A + + + Sbjct: 303 TVDRSERIRTYNFPENRITDHRIGFKAHNLDAVLDGDMEALLDALGKADREARLAA 358 >gi|217077770|ref|YP_002335488.1| peptide chain release factor 1 [Thermosipho africanus TCF52B] gi|217037625|gb|ACJ76147.1| peptide chain release factor 1 [Thermosipho africanus TCF52B] Length = 358 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 153/340 (45%), Positives = 219/340 (64%), Gaps = 10/340 (2%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 +E ++S + D +E+Y+ + I Y + + E + E+ Sbjct: 18 LKSLEEKLSSQLTPDQIRTYSEKYSKMKEIFQLAKEYLEIEDEIELWKE---------EM 68 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + + EV ++K+ ++ ++ L+LP+ K+ LEIRAGTGG EAALF DL RM Sbjct: 69 PEGFEHEVEKLQKKQEDIMQDLISLVLPESEYSGKNVFLEIRAGTGGEEAALFAADLLRM 128 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y RY + +K E++ + D GGYKE+V I G+ V + +K+ESGVHRVQRVP TE+ G Sbjct: 129 YLRYVEKKNFKAEIVDENKTDLGGYKEVVIKIKGKNVGNLLKYESGVHRVQRVPTTESGG 188 Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R+HTS ATVAVLPE + ++++I DIRIDT RASG+GGQ+VN T+SAVRITHIPTGI+V Sbjct: 189 RIHTSTATVAVLPEVSNVEIEINPSDIRIDTYRASGAGGQYVNKTESAVRITHIPTGIVV 248 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 SE+SQ QN+ +AM +LRARL+ ++ + + S+NRK QIG+G+RSE+IRTYNF Q Sbjct: 249 TCQSERSQLQNKEQAMNILRARLFKLKLEEQERKISSNRKSQIGTGERSEKIRTYNFPQN 308 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+TDHRIN T Y L+ VL G +D+ I L+ + + + Sbjct: 309 RVTDHRINYTSYNLQAVLDGELDEFITRLMRIDMLEQLEN 348 >gi|114320956|ref|YP_742639.1| peptide chain release factor 2 [Alkalilimnicola ehrlichii MLHE-1] gi|114227350|gb|ABI57149.1| bacterial peptide chain release factor 2 (bRF-2) [Alkalilimnicola ehrlichii MLHE-1] Length = 354 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 165/342 (48%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R E+ + + + L E A + ++ D + +L + D Sbjct: 19 KRERLEEVTRELEQPEVWNDPERAQSLGRERAQLEGLVETFERLDSVLGDADELLEMAAD 78 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + ++ + + D + ++I+AG GG+EA + Sbjct: 79 EGDEE-----TVAALQSDLGDCERELQKLEFRRMFSGEMDPANAFMDIQAGAGGTEAQDW 133 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +K E++ S+ D+ G K G F ++ E G+HR+ R Sbjct: 134 ANMLLRMYLRWGERHGFKTEIIELSEGDEAGIKSATVKFEGEYAFGWLRTEIGIHRLVRK 193 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS A+V V PE + D+R+D RASG+GGQHVN T+SAVRIT Sbjct: 194 SPFDSGNRRHTSFASVFVSPEVDDDVDIDINPADLRVDVYRASGAGGQHVNRTESAVRIT 253 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H+P+GI+V ++SQH+NR AMK L+++L+++E ++ +E A K IG G+ Sbjct: 254 HMPSGIVVQCQQDRSQHKNRATAMKQLKSKLFELEMQKRRDEAEAVEGTKSDIGWGN--- 310 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + + VL G +D I L A Sbjct: 311 QIRSYVLDQSRIKDLRTGVEVGNTQAVLDGDLDQFIEASLKA 352 >gi|159475365|ref|XP_001695789.1| peptide chain release factor [Chlamydomonas reinhardtii] gi|158275349|gb|EDP01126.1| peptide chain release factor [Chlamydomonas reinhardtii] Length = 383 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 140/358 (39%), Positives = 233/358 (65%), Gaps = 6/358 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ + F E+++RM++ + K+ + + + ++ Y +Q+ D Sbjct: 23 MVDKLRAAEMTFKELQMRMADPEVAASATEFQKVAKAASDLETTVNTYRAYQDTEQQLAD 82 Query: 62 LHTVIGDH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + +SD E+ + A+ E+ +E + +L++ + L+P+D DD++ +LEIRAG Sbjct: 83 AQKYLKEEASSDPEMAEFAREEIAELEASLTKLQDALRLQLVPRDPLDDRNIMLEIRAGA 142 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA+++ GDL RMY+RYA + WK ++S + + GGYKEI+ I+G V+S++K+E+ Sbjct: 143 GGDEASIWAGDLMRMYQRYANKQGWKASLVSCTQAEAGGYKEIILQINGDSVYSKLKWEA 202 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEA+GRVHTS ATVAV+PE E+DV + + DI + RASG+GGQ+VN Sbjct: 203 GVHRVQRVPATEAAGRVHTSTATVAVMPEVEEVDVALNMNDIDLKFARASGAGGQNVNKV 262 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H PTGI + E++Q QN+ RA ++LRA+LY++E +R E A RK Q+G+ Sbjct: 263 ETAVDLMHKPTGIRVFCQEERTQAQNKERAFQILRAKLYELELQRQQAEIYAARKSQVGT 322 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSE+I+TYN+ R++DHRI + + L +++G ++D + +++A Q + + +E Sbjct: 323 GDRSEKIKTYNYKDSRVSDHRIKMN-FDLNSIIEGDLEDTLQAMISADQQEKLKELAE 379 >gi|261420549|ref|YP_003254231.1| hypothetical protein GYMC61_3194 [Geobacillus sp. Y412MC61] gi|297531361|ref|YP_003672636.1| hypothetical protein GC56T3_3133 [Geobacillus sp. C56-T3] gi|319768218|ref|YP_004133719.1| hypothetical protein GYMC52_3223 [Geobacillus sp. Y412MC52] gi|261377006|gb|ACX79749.1| hypothetical protein GYMC61_3194 [Geobacillus sp. Y412MC61] gi|297254613|gb|ADI28059.1| hypothetical protein GC56T3_3133 [Geobacillus sp. C56-T3] gi|317113084|gb|ADU95576.1| hypothetical protein GYMC52_3223 [Geobacillus sp. Y412MC52] Length = 367 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 112/347 (32%), Positives = 182/347 (52%), Gaps = 16/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + R E+E +M+ D + + ++ + S +++ + + Sbjct: 26 DLEAKQARIRELEEQMAAPNFWDDQKAAQAVISEVNALKDLVEEFSSLEERFDNLEVTYE 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D +L + ++ LL + D + ILE+ G GG+E Sbjct: 86 LLKEEPDDELQAELVEEAKKLMKDFSE-----FELQLLLNEPYDQNNAILELHPGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE L ++ G K + I G + +K E GVHR Sbjct: 141 SQDWASMLLRMYTRWAEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +ASGR HTS + V+PE I+++I E+++IDT R+SG+GGQHVNTTDSA Sbjct: 201 LVRISPFDASGRRHTSFVSCEVVPELDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITH+PTGI+V SE+SQ +NR +AM +L+A+LY + + E + R Q IG G Sbjct: 261 VRITHLPTGIVVTCQSERSQIKNREKAMNMLKAKLYQKKLEEQQAELAELRGEQKEIGWG 320 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + DHR N+ + ++ V+ G ID I+ L A Sbjct: 321 N---QIRSYVFHPYSLVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRA 364 >gi|168036672|ref|XP_001770830.1| predicted protein [Physcomitrella patens subsp. patens] gi|162677889|gb|EDQ64354.1| predicted protein [Physcomitrella patens subsp. patens] Length = 376 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 127/353 (35%), Positives = 217/353 (61%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +R+++ + Y K+ + A + I + + + + D Sbjct: 17 KLDSAERTYKELSMRLADPDVANNNNEYQKIAKSLAELEEIYQTYQRFKECEAQLDDAKE 76 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D E+ ++A E + +++ ELE ++ +LLP D D ++ +LE+RAGTGG E Sbjct: 77 MAKDAAGDREMAEMAAEEANILAQQVEELEEQLKVMLLPSDPLDSRNIMLEVRAGTGGDE 136 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++++ W+ +S ++ + GGYKE V I+G V+S++K+ESGVHR Sbjct: 137 AGIWAGDLVRMYQKFSERNNWRCSPVSCTEAEKGGYKEFVLEITGERVYSKLKYESGVHR 196 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++A+ Sbjct: 197 VQRVPATESQGRVHTSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAI 256 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ +N++RA ++LRA+LY+++ + R+ Q+G+G RS Sbjct: 257 DLFHKPTGIRIFCTEERSQLKNKIRAFQLLRAKLYEIKLREQQETIRNARQSQVGTGARS 316 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R++DHR + + L VL G ++ + Q +M+ + Sbjct: 317 EKIRTYNYKDNRVSDHRTKIN-FDLTTVLNGELEGPVQSCAALEQKEMLEELA 368 >gi|319787948|ref|YP_004147423.1| peptide chain release factor 1 [Pseudoxanthomonas suwonensis 11-1] gi|317466460|gb|ADV28192.1| peptide chain release factor 1 [Pseudoxanthomonas suwonensis 11-1] Length = 360 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 164/336 (48%), Positives = 234/336 (69%), Gaps = 10/336 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + + L+ E++ + P+ + ++ + +++ + D E+ +LAQ E Sbjct: 29 MGDPA---RFRDLSREFSQLEPVATALAAEARAREDLATAEAM----RDDPELAELAQEE 81 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A + +L++E+ LL+PKD D+ + LE+RAGTGG EAALF GDLFRMY RYA Sbjct: 82 IAAARGRLEQLDHELALLLVPKDPRDEGNLFLEVRAGTGGDEAALFAGDLFRMYARYAER 141 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WKVEV S + + GG+KEIVA I GRG +S++KFESG HRVQRVPATE+ GR+HTSAA Sbjct: 142 QGWKVEVESDNPGEHGGHKEIVARIVGRGAYSKLKFESGTHRVQRVPATESQGRIHTSAA 201 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 TVA++PEA EI+ D+++DT R+SG+GGQHVN TDSA+RITH+P+G++V + +E+ Sbjct: 202 TVAIIPEADEIEEITINPADLKVDTFRSSGAGGQHVNKTDSAIRITHLPSGLVVESQTER 261 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQH NR +AMK L+A+L D ER + ++ +R+LQ+GSGDRS+RIRTYNF QGRITDHR Sbjct: 262 SQHANRDKAMKRLKAQLLDAERSKQQAAQAESRRLQVGSGDRSQRIRTYNFPQGRITDHR 321 Query: 321 I-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + LTLY L +L+G +D +++ L HQA + Sbjct: 322 VEGLTLYDLPNILEGDLDPLVSRLQQEHQADELARL 357 >gi|172087665|ref|YP_203835.2| peptide chain release factor RF-2 [Vibrio fischeri ES114] gi|229576704|sp|Q5E7P9|RF2_VIBF1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|171902260|gb|AAW84947.2| peptide chain release factor RF-2 [Vibrio fischeri ES114] Length = 365 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 178/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E A++ ++ I + DQ ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERASLEAVVETIDLLDQGVEDVDGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + ++ E+ ++ + + D C +++++G+GG+EA Sbjct: 88 VEEEDQETFDEIEPE-----LAELEAKLAKLEFRRMFSGDHDASDCYIDLQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +KVEV+ S+ + G K I+G + ++ E+GVHR+ Sbjct: 143 DWTSMMLRMYLRWAEAKGFKVEVIEVSEGEVAGLKGATVRIAGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS A+ + PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 203 RKSPFDSSGRRHTSFASAFIYPEIDDNIQIDINPSDLRIDVYRASGAGGQHVNTTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK LRA+L++ E ++ E+ AN K IG G Sbjct: 263 ITHVPTNIVVQCQNDRSQHKNKDQAMKQLRAKLFEYELQKQNAEKQANEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 362 >gi|325002820|ref|ZP_08123932.1| peptide chain release factor 1 [Pseudonocardia sp. P1] Length = 358 Score = 242 bits (616), Expect = 8e-62, Method: Composition-based stats. Identities = 146/362 (40%), Positives = 215/362 (59%), Gaps = 16/362 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ + + L + +AE+E R+++ + KL + YA + P++ Q +++ Sbjct: 1 MASQSVDSLLDEYAELEQRLADPEVLADQVQARKLGKRYAQLGPVVRCARDLAQAREDRD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + S + D + V+ +E E+ LL+P+D D ++E+++G Sbjct: 61 AARELASEDRSFAAEADALDVRVVELETELA-------ELLVPRDPHDSDDVLMEVKSGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG----VFSRM 176 GG E+ALF GDL RMY RYA R WKVE+L S+ +D GG+K++ ++ + ++ + Sbjct: 114 GGEESALFAGDLVRMYTRYAESRGWKVELLGSTPSDLGGFKDVTLSVRSKDPAQGAWAAL 173 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GR+HTSAA V V P+A E +I +DIR+D RASG GGQ Sbjct: 174 KFEGGVHRVQRVPVTESQGRIHTSAAGVLVFPDADETPDVEIDEKDIRVDVFRASGHGGQ 233 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+P+GI+V +E+SQ QN+ RAM VLRARL A S R+ Sbjct: 234 SVNTTDSAVRITHLPSGIVVSCQNERSQLQNKARAMDVLRARLQAKAEAEAAEAASEQRR 293 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q+ + DRSERIRTYNF + RI+DHR+ + L VL G + D+ L A +A+ + Sbjct: 294 SQVRTVDRSERIRTYNFPENRISDHRVGFKAHNLSSVLDGNLTDVFAALTAADRAEAMAG 353 Query: 355 AS 356 S Sbjct: 354 ES 355 >gi|33519808|ref|NP_878640.1| peptide chain release factor 1 [Candidatus Blochmannia floridanus] gi|81666793|sp|Q7VR74|RF1_BLOFL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33504153|emb|CAD83415.1| peptide chain release factor 1 (RF-1) [Candidatus Blochmannia floridanus] Length = 358 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 148/359 (41%), Positives = 226/359 (62%), Gaps = 9/359 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQE 58 M + ++ LK RF ++E ++ +++ + L++E+ + II + ++ Sbjct: 1 MHTILINKLMSLKQRFYKLEKSLNNFNTINNKEFYSLSKEHTYLHEIIKYFEEWLNIQKN 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ SD ++ D+ Q E+ + LEN+I LL D +C +E+RA Sbjct: 61 IVHTKDML----SDIDMHDIVQDELKILNTSKHNLENKIKILLFSDPQDQY-NCFIELRA 115 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 GTGG EAA+F G+LFRMY RY +++W +E++ ++ + GGYKEI+ + G + ++KF Sbjct: 116 GTGGKEAAIFAGELFRMYSRYIEMQRWNMEIIHATYGECGGYKEIIIKVPVHGSYGQLKF 175 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHV 237 ESG HRVQR+P TE+ GR+HTS T+AV+P +I D+RIDT R+SG+GGQHV Sbjct: 176 ESGGHRVQRIPNTESQGRIHTSTCTIAVIPNIPNAILPEINSNDLRIDTFRSSGAGGQHV 235 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSA+RITHIP+G+ V E+SQH+N+ +A+ VL++RLY + K+ E S R+ Sbjct: 236 NTTDSAIRITHIPSGLSVECQDERSQHKNKSKALSVLKSRLYAINIKQKQQEESNVRRNL 295 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IG+GDRS+RIRTYNF QGR+TDHRI T YKL ++ G +D +I P++ HQA ++ Sbjct: 296 IGTGDRSDRIRTYNFQQGRVTDHRIAFTSYKLHDIMNGKLDILIQPIMCKHQATLLDQL 354 >gi|289208167|ref|YP_003460233.1| hypothetical protein TK90_0982 [Thioalkalivibrio sp. K90mix] gi|288943798|gb|ADC71497.1| conserved hypothetical protein [Thioalkalivibrio sp. K90mix] Length = 364 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 180/341 (52%), Gaps = 15/341 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R E++ + + L +E A + I+ I + + +DL + + Sbjct: 29 KEERLEEVQRELENPDIWNDPDRAQALGKERAQLENIVVNIREIGTQLDDSRDLLEMA-E 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D+E + +V A+ + LE + + D+ + L+I+AG+GG+EA + Sbjct: 88 ADDDAETASAVEADVEALTARVEALE----FRRMFSGDMDEANAYLDIQAGSGGTEAQDW 143 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A +K E++ S+ + G K I G F ++ E+GVHR+ R Sbjct: 144 ANILLRMYLRWAEAHGFKTEIIELSEGEVAGIKSATVRIEGEYAFGWLRTETGVHRLVRK 203 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS A+V PE +++I D+R+DT RASG+GGQHVN T+SA+RIT Sbjct: 204 SPFDSGNRRHTSFASVFASPEVDDSFEIEINPADLRVDTYRASGAGGQHVNRTESAIRIT 263 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSE 304 H P+GI+V +++SQH+NR AMK L+A+LY++E ++ E+ + + K IG G Sbjct: 264 HEPSGIVVACQNDRSQHKNRDTAMKQLKAKLYEMEIQKRNAEKQAAEDAKSDIGWG---S 320 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + + VL G +D I L Sbjct: 321 QIRSYVLDQSRIKDLRTGVEVGNTQAVLDGDLDQFIEASLK 361 >gi|322831509|ref|YP_004211536.1| Peptide chain release factor 2 [Rahnella sp. Y9602] gi|321166710|gb|ADW72409.1| Peptide chain release factor 2 [Rahnella sp. Y9602] Length = 365 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVETIDELLQGAEDVTGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + E+ + ++ +LE + + D SC L+I+AG+GG+EA Sbjct: 88 VEA-DDEDTFNETVAELDVLTAKLEQLE----FRRMFSGEYDSASCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K EV+ SD + G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAEAKGFKTEVIEESDGEVAGLKSATIKIIGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +I+++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIEIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ +++SQH+N+ +AMK +RA+LY+ E ++ ++ + K IG G Sbjct: 263 ITHLPTNIVTQCQNDRSQHKNKDQAMKQMRAKLYEYEMQKKNADKQQLEDTKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|84494539|ref|ZP_00993658.1| peptide chain release factor 1 [Janibacter sp. HTCC2649] gi|84384032|gb|EAP99912.1| peptide chain release factor 1 [Janibacter sp. HTCC2649] Length = 360 Score = 242 bits (616), Expect = 9e-62, Method: Composition-based stats. Identities = 143/359 (39%), Positives = 207/359 (57%), Gaps = 18/359 (5%) Query: 10 CDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L A +E M + D ++ + YAA+ P ++ + + + + + Sbjct: 6 EVLAQEHATLEREMGDPAIASDPDKLREINKRYAALGPTVAAYAAWQLATDDLEAARELA 65 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+ + L LL+P+D DDD+ I+E++AG GG E+A Sbjct: 66 TE---DAGFAAEVPALETSANDAADRL----RRLLIPRDPDDDRDVIVEVKAGEGGEESA 118 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV-------FSRMKFE 179 LF GDL RMY RYA R W+ EVL S++ D GG+K++ ++ + ++R+K+E Sbjct: 119 LFAGDLLRMYLRYAERRGWRTEVLGSTETDLGGFKDVQVSVKSKKAPLPGEGPWARLKYE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE GR+HTSAA V V+PEA E++V+I D+RID R+SG GGQ VNT Sbjct: 179 GGVHRVQRVPITETQGRIHTSAAGVWVMPEAEEVEVEIHANDLRIDVFRSSGPGGQSVNT 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTG +V +EKSQ QNR AM+VLRARL+ + + R Q+ Sbjct: 239 TDSAVRLTHLPTGTVVICQNEKSQLQNREAAMRVLRARLHQMAMDEANAASADIRASQVR 298 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF++ RI+DHR Y L+ VL G +D ++ +TA + + + E Sbjct: 299 TVDRSERIRTYNFAENRISDHRTGFKAYNLDTVLGGELDAVVESAMTADEQARLAALGE 357 >gi|239917332|ref|YP_002956890.1| bacterial peptide chain release factor 1 (bRF-1) [Micrococcus luteus NCTC 2665] gi|281414188|ref|ZP_06245930.1| bacterial peptide chain release factor 1 (bRF-1) [Micrococcus luteus NCTC 2665] gi|239838539|gb|ACS30336.1| bacterial peptide chain release factor 1 (bRF-1) [Micrococcus luteus NCTC 2665] Length = 369 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 147/369 (39%), Positives = 209/369 (56%), Gaps = 16/369 (4%) Query: 1 MVFLSHKQ--ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQK 55 M ++ + L E+ R+S+ +L +A + +++ + Sbjct: 1 MFDSEQRREAVDRLLAEHRELTARLSDPAVHQDPALARRLNRRFAELGAVVTAHRAWSAA 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +E D + + D+ + A E E + LL+P+D DD + ILE Sbjct: 61 AEELADARELAAAGDDDAAAFAAEVPGLEAAEAEAA---ERLRRLLIPRDPDDARDVILE 117 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SG 169 I+ G GG EAALF GDL RMY RYA R WK EVLS++ +D GGYK++ + Sbjct: 118 IKGGEGGEEAALFAGDLLRMYLRYADSRGWKTEVLSATHSDLGGYKDVHVAVRGSAADPA 177 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMR 228 GV++R+KFE GVHRVQRVP TE+ GR+HTSAA V VLPE +V + D+++D R Sbjct: 178 DGVYARLKFEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDAPDEVHLDPNDLKVDVFR 237 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG GGQ VNTTDSAVR+TH+PTGI+V+ +EKSQ QNR A++VLR+RL + +R Sbjct: 238 SSGPGGQSVNTTDSAVRLTHLPTGIVVSMQNEKSQIQNREAALRVLRSRLLERQRAEQDA 297 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 E SA R Q+ + DRSERIRTYNF + RI DHR + L+ VL G ++ +I L Sbjct: 298 EDSAARAAQVRTMDRSERIRTYNFPENRIADHRTGYKAHNLDAVLDGDLEAVIASCLALD 357 Query: 348 QAKMIGSAS 356 + + + + Sbjct: 358 EERRLAALG 366 >gi|120405293|ref|YP_955122.1| peptide chain release factor 1 [Mycobacterium vanbaalenii PYR-1] gi|166223576|sp|A1TD66|RF1_MYCVP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119958111|gb|ABM15116.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium vanbaalenii PYR-1] Length = 357 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 208/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I + + E+E R+++ A K+ +A ISPI+S + + + + + Sbjct: 8 IEAILAEYGELEQRLADPELHADPAAAKKVGRRFAQISPIVSTYHKLEAARGDLEAAREL 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D S + D +V ++ + LL P+D D +LE+++G GG E+ Sbjct: 68 AADDASFAAEVDELTTKVADLDDRLT-------DLLAPRDPHDADDIVLEVKSGEGGEES 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-----SGRGVFSRMKFES 180 ALF DL RMY RYA W V +L + +D GGYK+ +I S GV+SR+KFE Sbjct: 121 ALFAADLARMYIRYAERHGWTVTMLGETTSDLGGYKDATLSIAGKGDSADGVWSRLKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE E V I D+RID R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPDEVEQVQIDESDLRIDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ + + SA+R QI Sbjct: 241 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQASADASADRASQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI DHRIN + L+ VL G +D + + L A + + + Sbjct: 301 TVDRSERIRTYNYPENRIADHRINYKSHNLDQVLDGDLDPLFDALAAADKQARLQN 356 >gi|85057288|ref|YP_456204.1| peptide chain release factor 1 [Aster yellows witches'-broom phytoplasma AYWB] gi|84789393|gb|ABC65125.1| bacterial peptide chain release factor 1 [Aster yellows witches'-broom phytoplasma AYWB] Length = 351 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 138/351 (39%), Positives = 214/351 (60%), Gaps = 2/351 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +K ++ +++ + ++ I + + + + P + + Y + E + T Sbjct: 1 MLDRLKKIKQKYQDLQKLLLNEQNITQKIDIFKNLSKLEPTVELFNRYLNLETEFIQVQT 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+ LA+ E I + + ++ LLLP+D D K+ +LEI+ GG+E Sbjct: 61 IL-ETEQDQELLLLARQEKDTILSKKKITLEKLKILLLPQDPFDKKNVVLEIKGAAGGNE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF DL R Y +YA +KWKVE+L+ + + GG + ISG+ ++S +K+ESGVHR Sbjct: 120 ANLFAADLLRTYVKYAESKKWKVEILNLNPSIKGGLSSVELLISGKNIYSFLKYESGVHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GR+HTS A V V PEA E+++ I DIR DT +SG GGQ VNTT SAV Sbjct: 180 VQRVPTTEAQGRIHTSTAVVLVFPEAEELELKIDWHDIRTDTFNSSGPGGQSVNTTKSAV 239 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+P+GI + KSQH+N+ +A +L+ R+Y+ E +RK +G+G+RS Sbjct: 240 RLTHVPSGISVACQEGKSQHENKDKAFTLLKTRIYNQMLNIKQEEEKTHRKKLVGTGERS 299 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 E+IRTYN+ Q RITDHRI LTL KL+ +++G +D +I PL+ Q + + Sbjct: 300 EKIRTYNYPQNRITDHRIGLTLQKLDIIMEGKLDLVIEPLIHEAQKEQLAQ 350 >gi|226328243|ref|ZP_03803761.1| hypothetical protein PROPEN_02136 [Proteus penneri ATCC 35198] gi|225202976|gb|EEG85330.1| hypothetical protein PROPEN_02136 [Proteus penneri ATCC 35198] Length = 347 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 182/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I DQ ++ L + Sbjct: 10 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVETIDQLDQGLEDVSGLLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E + A E+ + K++ +LE + + D C L+++AG+GG+EA Sbjct: 70 VEA-DDEETFNEAIAELDVLNKKLEQLE----FRRMFSGEYDSADCYLDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ SD D G K I G + ++ E+GVHR+ Sbjct: 125 DWASMLMRMYLRWAESRGFKTEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 185 RKSPFDSGGRRHTSFSSAFIYPEVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTG++ +++SQH+N+ +AMK ++A+LY++E ++ ++ + K IG G Sbjct: 245 ITHVPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNADKQVMEDNKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 345 >gi|297580789|ref|ZP_06942715.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Vibrio cholerae RC385] gi|297535205|gb|EFH74040.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Vibrio cholerae RC385] Length = 344 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 181/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +A+ ++ I D+ + + L + Sbjct: 7 DAKKERLEEVNAELEQPDVWTQPERAQALGKERSALEAVVDTIDQLDRGVDDVEGLLELA 66 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E D E+ +E ++ +LE + + D C L+++AG+GG+EA Sbjct: 67 IEAE-DQETFDEIGPELDELEVKLEQLE----FRRMFSGDHDSSDCYLDLQAGSGGTEAQ 121 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K EV+ S+ D G K I G + ++ E+GVHR+ Sbjct: 122 DWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATVRIIGDYAYGWLRTETGVHRLV 181 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ + PE E D++I D+RID RASG+GGQHVNTT+SAVR Sbjct: 182 RKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRIDVYRASGAGGQHVNTTESAVR 241 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G Sbjct: 242 ITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG-- 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 300 -SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 341 >gi|160876721|ref|YP_001556037.1| peptide chain release factor 2 [Shewanella baltica OS195] gi|160862243|gb|ABX50777.1| peptide chain release factor 2 [Shewanella baltica OS195] Length = 352 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 15 DAKNERLEEVTRELESSEVWNDPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + D +C L+I++G+GG+EA Sbjct: 75 IEEEDEDTFNETSKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RIDT RASG+GGQHVN T+SA+R Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPSDLRIDTYRASGAGGQHVNKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + + + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNKDAAMKQLKAKLFELEMLKQNADKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLK 349 >gi|117617639|ref|YP_857857.1| peptide chain release factor 2 [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166223621|sp|A0KNK6|RF2_AERHH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|117559046|gb|ABK35994.1| peptide chain release factor 2 (programmed frameshift) [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 365 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 165/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E A+ ++ I Q + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERVALENVVGTIDTLTQGADDVAMLVELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A + ++ + + D C ++I++G+GG+EA Sbjct: 88 VEGEDEDTFNEAV-----AEADVLETKLVDLEFRRMFSGQHDPSDCYIDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ S+ D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMYLRWGDAHGYKPELIECSEGDVAGIKSATIKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFCSVFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTG++V +++SQH+N+ + MK L+A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPTGVVVQCQNDRSQHKNKDQCMKQLKAKLYELEIQKQNAEKQALEETKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLK 362 >gi|330723258|gb|AEC45628.1| peptide chain release factor 1 [Mycoplasma hyorhinis MCLD] Length = 383 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 156/362 (43%), Positives = 235/362 (64%), Gaps = 9/362 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + +K ++ + ++ + ++ Y K+ +E A+I I+ Y ++ Sbjct: 23 MEKSMLNSLNSIKEKYEHLSNQLLDPEIVSNIKEYTKINKELASIEDIVLAFKNYLKQVS 82 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D ++ + D EI +LA+ E+ K+I E+E E+ LLLPKD +DDK+ I+EIR Sbjct: 83 IIEDSKKLLQEK--DVEIHNLAKEEITLATKKIEEIEKELVVLLLPKDENDDKNVIVEIR 140 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +FVGDL++MY ++A +KW V+VL+SS GG+ +IV +SG V+S++K Sbjct: 141 GAAGGDEANIFVGDLYKMYLKWAESKKWSVKVLNSSLASAGGFTQIVFLVSGDKVYSKLK 200 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQR+P TE GRVHTS TV ++PE +I VDI +D+RIDT R+SG+GGQ Sbjct: 201 FESGVHRVQRIPETETQGRVHTSTTTVTIMPEVDDDIQVDIKAQDLRIDTYRSSGAGGQS 260 Query: 237 VNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTG++ + +SQ N+ A+K+L++++Y++E ++ RKL Sbjct: 261 VNTTDSAVRITHIPTGLVSTSQDGRSQIANKELALKILKSKIYNLEVEKKQAIEGQFRKL 320 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 GSG RSE+IRTYN+ Q R+TDHRI+ + L+ V+ G +D II+ LL +A+ I ++ Sbjct: 321 A-GSGARSEKIRTYNYPQDRVTDHRISFSTS-LKNVIVGNLDPIIDALLAEDKAERIATS 378 Query: 356 SE 357 E Sbjct: 379 YE 380 >gi|213859593|ref|ZP_03385297.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 317 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 165/319 (51%), Positives = 232/319 (72%), Gaps = 6/319 (1%) Query: 41 AISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYL 100 +S + + + Q + + + ++ D E+R++AQ E+ +++ +LE ++ L Sbjct: 1 QLSDVSRCFTDWQQVQDDIETAQMML----DDPEMREMAQEELREAKEKSEQLEQQLQVL 56 Query: 101 LLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY 160 LLPKD DD+++ LE+RAGTGG EAALF GDLFRMY RYA R+W+VE++S S+ + GGY Sbjct: 57 LLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGY 116 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPL 219 KEI+A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTSA TVAV+PE E + DI Sbjct: 117 KEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINP 176 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ Sbjct: 177 ADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIH 236 Query: 279 DVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 E + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D Sbjct: 237 AAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDM 296 Query: 339 IINPLLTAHQAKMIGSASE 357 +I P++ HQA ++ + SE Sbjct: 297 LIEPIVQEHQADLLAALSE 315 >gi|298500779|ref|ZP_07010582.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Vibrio cholerae MAK 757] gi|297540560|gb|EFH76618.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Vibrio cholerae MAK 757] Length = 344 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 181/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +A+ ++ I D+ + + L + Sbjct: 7 DAKKERLEEVNAELEQPDVWTQPERAQALGKERSALEAVVDTIDQLDRGVDDVEGLLELA 66 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E D E+ +E ++ +LE + + D C L+++AG+GG+EA Sbjct: 67 IEAE-DQETFDEIGPELDELEAKLEQLE----FRRMFSGDHDSSDCYLDLQAGSGGTEAQ 121 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K EV+ S+ D G K I G + ++ E+GVHR+ Sbjct: 122 DWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATVRIIGDYAYGWLRTETGVHRLV 181 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ + PE E D++I D+RID RASG+GGQHVNTT+SAVR Sbjct: 182 RKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRIDVYRASGAGGQHVNTTESAVR 241 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G Sbjct: 242 ITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG-- 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 300 -SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 341 >gi|168705097|ref|ZP_02737374.1| peptide chain release factor 1 [Gemmata obscuriglobus UQM 2246] Length = 358 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 142/354 (40%), Positives = 215/354 (60%), Gaps = 12/354 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + R+AE+E ++ + +K + +E A++ I+ Y + + D + Sbjct: 5 LEPQLARYAELEQQLYDPAIAGDPVKAGAIGKERGALAKIVEPYIEYKRLCRAIADAEVM 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D +++D+A E+ + + L I LL ++D I+EIRAGTGG EA Sbjct: 65 AA----DPDLKDMADEELADLRPKRDALHARIEEKLLLDPSEDFSKLIIEIRAGTGGDEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ALF G+L+ MY RYA + WK+E ++SS + GG+KE+ ++G V+ +++ESG HRV Sbjct: 121 ALFAGNLYEMYTRYAREKGWKIEEIASSPGEAGGFKEVAFGVTGDDVYQLLRYESGGHRV 180 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDSAV 244 QRVPATE GR+HTSAATVAVLPE E V+I DI + MRA G+GGQHVN T+SAV Sbjct: 181 QRVPATETQGRIHTSAATVAVLPEPEEAQVEINEANDIEWERMRAGGAGGQHVNKTESAV 240 Query: 245 RITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 RI + + +SQ +N +AM++LR+RL++ +++R+ ER++ RK QIGSG Sbjct: 241 RIWYKKGTPDEMEVKCQDGRSQGKNYEQAMRILRSRLFERQQERIHRERASMRKEQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DR+ RIRTYNF Q R TDHRI T+YKL+ ++ G +D +I P+ + + + + Sbjct: 301 DRNARIRTYNFPQNRCTDHRIEFTVYKLDAIMAGALDQMIQPMRDHVKKEKLAA 354 >gi|325578209|ref|ZP_08148344.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC 33392] gi|325159945|gb|EGC72074.1| peptide chain release factor RF2 [Haemophilus parainfluenzae ATCC 33392] Length = 364 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + K L +E ++ ++ I +Q ++ + L + Sbjct: 27 DAKVERLEEVNAELEQPDVWNDPEKAQALGKERVSLEQVVDTIKNLEQGLEDVEGLLELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 87 VEAEDEETFNEAV-----AELDELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 142 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V V PE + D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 202 RKSPFDSNNRRHTSFAAVFVYPEIDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 262 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 320 -SQIRSYVLDDARIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 362 >gi|220913097|ref|YP_002488406.1| peptide chain release factor 1 [Arthrobacter chlorophenolicus A6] gi|254790860|sp|B8HB03|RF1_ARTCA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|219859975|gb|ACL40317.1| peptide chain release factor 1 [Arthrobacter chlorophenolicus A6] Length = 357 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 141/362 (38%), Positives = 208/362 (57%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L + I+ ++ + KL A ++ I+ ++ + + Sbjct: 3 ESVQGLLDEHDSIQAQLGDPAVYADQRLARKLGRRSAQLNGIVEAYHRWEGLRDDLSAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E ++E +L LL+P+D DD ++ ILE++ G GG Sbjct: 63 EMAAE---DPEFAAEVPELEASLETAAAKL----RRLLIPRDPDDARNVILEVKGGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF GDL RMY RYA R WK E++S++++D GGYK++ + GV++R+K Sbjct: 116 EAALFAGDLLRMYTRYAESRGWKTEIISATESDLGGYKDVQVAVKGSSNDPAEGVYARLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVP TE+ GR+HTSAA V VLPE E + +I D++ID R+SG GGQ Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDEPEELEINQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ +++++ S RK Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARILAHQQEQIDAANSEQRKS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYN+ + RI DHR Y L+ V+ G ++ +I + + + + Sbjct: 296 QIRTMDRSERIRTYNYPENRIADHRTGYKAYNLDQVMNGDLEPVIQSAIEMDEQARLDAI 355 Query: 356 SE 357 + Sbjct: 356 GD 357 >gi|111115018|ref|YP_709636.1| peptide chain release factor 1 [Borrelia afzelii PKo] gi|119361512|sp|Q0SNW8|RF1_BORAP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|110890292|gb|ABH01460.1| peptide chain release factor 1 [Borrelia afzelii PKo] Length = 357 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 169/355 (47%), Positives = 247/355 (69%), Gaps = 5/355 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ +R IE ++ + + K ++ EY + I +K Y+ + Sbjct: 1 MFLEKLNSATSRIKSIEEKLQDINLIKNQKKYSKIIKEYTYLEKINTKKIEYENILNQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D T++ E+++L + E++ ++K+ LE+EI LLLP+D +D K+ I+EIRAGT Sbjct: 61 DNKTILEKEEQ-QEMKELIKQELIDLDKKKENLEHEIKILLLPQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KEI+ I G+ VF ++K+ES Sbjct: 120 GGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFKEIIFEIKGKDVFKKLKYES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+P TE++GR+ TSAATVAVLP E ++DI +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRIPITESNGRLQTSAATVAVLPNIEETEIDINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS NRK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFEDSKKQEQRSNNRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 GDRSERIRTYNF Q RITDHR N+TLYKLE +QG +D +++PL Q + + S Sbjct: 300 GDRSERIRTYNFPQNRITDHRANITLYKLEEFMQGELDQLLDPLTIELQEQTLKS 354 >gi|283783535|ref|YP_003374289.1| peptide chain release factor 1 [Gardnerella vaginalis 409-05] gi|283441331|gb|ADB13797.1| peptide chain release factor 1 [Gardnerella vaginalis 409-05] Length = 365 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + +IE RM DA KL +A + I++ Y Q + + + + D Sbjct: 17 EEYRDIESRMGSPEVASNPDAIRKLGRRHAELGSIVNAYLNYKQLCDDFEAANEMASD-- 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + A+ I +L L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 75 -DPDFAEEAKRLEEQIPAAKEKL----RTALIPRDPDDARDMIMEIKAGTGGEEAALFAG 129 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W + S + + GG K++ I GV++ MK+E GVH Sbjct: 130 DLLRMYMRYAEKRGWTTVIQSENSTELGGVKDVQLAIRAKGTPAPEDGVWASMKYEGGVH 189 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 190 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 249 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 250 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 309 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + A Sbjct: 310 DRSERIRTYNFPENRIVDHRTNYKAYNLDQVLDGDLQPVIDSDIQADEADRLAQA 364 >gi|227503858|ref|ZP_03933907.1| peptide chain release factor 1 [Corynebacterium striatum ATCC 6940] gi|227199481|gb|EEI79529.1| peptide chain release factor 1 [Corynebacterium striatum ATCC 6940] Length = 358 Score = 241 bits (615), Expect = 1e-61, Method: Composition-based stats. Identities = 145/358 (40%), Positives = 215/358 (60%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M + + KL++ YA + PI++ + Q +Q+ +D + Sbjct: 8 VDDIVSEYQGIEMQMGDPEVAGDQKLFRKLSKRYAELRPIVAVNNDLVQARQDLEDAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + D +E + ELE ++ LL P+D D + I+EI+AG GG EA Sbjct: 68 AYEDHDFQDEVD-------RLEPLVVELEEKLADLLAPRDEHDSEDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMYER+A ++ EVL +++D GG K++ + + +S KFE Sbjct: 121 ALFAGDLARMYERFADKAGFQWEVLGLNESDLGGVKDMSISFKSKTPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E++ +I +D+R+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVESVNIDEKDLRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ E R Q+ Sbjct: 241 TDSAVRITHLPTGLVVTCQKERSQIQNKARALQVLQARLDQIEREAREAEAGEQRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYN+ + RITDHRI L+ VL G + D+I L +A+ + + Sbjct: 301 TLDRSERIRTYNWPENRITDHRIGYKANNLDAVLNGDMQDLITALQAQERAERLEAEG 358 >gi|325963840|ref|YP_004241746.1| bacterial peptide chain release factor 1 (bRF-1) [Arthrobacter phenanthrenivorans Sphe3] gi|323469927|gb|ADX73612.1| bacterial peptide chain release factor 1 (bRF-1) [Arthrobacter phenanthrenivorans Sphe3] Length = 357 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 211/362 (58%), Gaps = 18/362 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L + I+ ++ + KL A ++ I+ ++ + + Sbjct: 3 ESVQGLLDEHDAIQAQLGDPAVYADQRLARKLGRRSAQLNGIVEAYHKWEGIRDDLAAAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E ++E+ +L LL+P+D DD ++ ILE++ G GG Sbjct: 63 EMASE---DPEFAAEVPELEASLEEAAAKL----RRLLIPRDPDDARNVILEVKGGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 EAALF GDL RMY RYA R WK E++S++++D GGYK++ + GV++R+K Sbjct: 116 EAALFAGDLLRMYTRYAESRGWKTEIISATESDLGGYKDVQVAVKGNSNDPAEGVYARLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVP TE+ GR+HTSAA V VLPE E + +I D++ID R+SG GGQ Sbjct: 176 FEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDEPEELEINQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ +++++ E SA RK Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARILAHQQEQIDAENSAQRKS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYN+ + RI DHR Y L+ V+ G ++ +I + + + + Sbjct: 296 QIRTMDRSERIRTYNYPENRIADHRTGYKAYNLDQVMNGDLEPVIQSAIEMDEQARLDAI 355 Query: 356 SE 357 + Sbjct: 356 GD 357 >gi|87309295|ref|ZP_01091431.1| peptide chain release factor 1 [Blastopirellula marina DSM 3645] gi|87287934|gb|EAQ79832.1| peptide chain release factor 1 [Blastopirellula marina DSM 3645] Length = 358 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 136/357 (38%), Positives = 223/357 (62%), Gaps = 6/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + + +RF +E +MS+ + + E+ +++ + +K + E + Sbjct: 1 MREMLEEKLSRFEFLEKQMSDPDVMGNSHQMATIAREHGSLAKLATKYRTFKNTIDEMGE 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + D E+ +LA +++ ++ + +L E+ + + D + +LEIR G G Sbjct: 61 AKELL--ESDDEEMCELAAADIVTLKAKREKLWQELLDMTIGGDDANRTRIVLEIRGGAG 118 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL+ MY+RYA +KWK EV+ ++ + GG+KE++ ++ G GV+ +++ESG Sbjct: 119 GDEAALFARDLYEMYKRYAETKKWKYEVMEANPTELGGFKEVIISVEGEGVYRELQYESG 178 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR-ASGSGGQHVNTT 240 HRVQRVP TEA GRVHTSAATVAV+PE +++ ++ ED ++ +SG GGQHVN T Sbjct: 179 GHRVQRVPETEAKGRVHTSAATVAVMPEPEDVEFELNPEDYEVERYAASSGPGGQHVNKT 238 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H I+ E+SQH+N +A+++L+ +LY+V+R +RS +RK +GSG Sbjct: 239 ASAVRLIHKDGVIVQCCEERSQHKNLAKALRLLKTKLYEVKRAEEEKQRSDHRKSLVGSG 298 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRS+RIRTYNF + R+TDHRINLTLYKL+ ++ G I +I+ L+ + ++ G + Sbjct: 299 DRSQRIRTYNFPENRVTDHRINLTLYKLDQIIAGAIQPVIDGLVDYDRQQLRGDMGD 355 >gi|56478734|ref|YP_160323.1| peptide chain release factor 2 [Aromatoleum aromaticum EbN1] gi|81598559|sp|Q5NZU2|RF2_AZOSE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|56314777|emb|CAI09422.1| peptide chain release factor 2 (RF-2),gene containing programmed frameshift site [Aromatoleum aromaticum EbN1] Length = 367 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 184/344 (53%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ E+ + + + K L +E + ++ + + + +DL + Sbjct: 30 DEKSSKLEEVTRALEDPAVWNNAEKAQELGKEKRQLEDVVHNLRDIESLSSDLKDLFDLA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + ++ ++ ++ LE + + + D C +EI+AG GG+EA Sbjct: 90 -EAEDDEDTLAAVEADIGELQAKVHALE----FRRMFSNPMDPNPCFIEIQAGAGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L RMY RY + + VE++ S+ + G K +SG + ++ E+G+HR+ Sbjct: 145 DWAGMLERMYLRYCERKGFNVELMEESEGEVAGIKGATIKVSGDYAYGFLRTETGIHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS ++V V PE + +DI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSNARRHTSFSSVFVYPEVDDSIQIDINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PTG++V +++SQH+N+ AM +L+ARLY++E ++ +E+ + K IG G Sbjct: 265 ITHEPTGVVVQCQNDRSQHKNKAEAMSMLKARLYELELRKRQSEQQKLEDSKSDIGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N + + VL G +DD I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNFEVGNTQAVLDGDLDDFIAASLKQ 365 >gi|33862085|ref|NP_893646.1| peptide chain release factor 1 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81575585|sp|Q7UZX1|RF1_PROMP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33634303|emb|CAE19988.1| peptide chain release factor RF-1 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 364 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 228/354 (64%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + F +E+++++ + KL E A + P++ + +E D Sbjct: 9 RLKNASESFVNLEMQLADPDIANNPKKLESIARERAKLEPLVLDFNQLLDTDKEIGDSKQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ +D ++ L E+ ++E +L ++ LLPKD D++S +LEIRAG GG+E Sbjct: 69 LLKENRNDKDMESLINEELFSLEDLKNQLIEKLTIALLPKDPRDERSVMLEIRAGAGGNE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V+ +S+S++D GG+KE+V ++ G V+S++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWTVKPISASESDMGGFKELVISVKGDSVYSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I +I I T R+ G+GGQ+VN ++A+ Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVKIDPTEIEIGTARSGGAGGQNVNKVETAI 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+LY+++ K + + R +Q+GSGDRS Sbjct: 249 DLIHKPTGIRVFCTQERSQLQNRERAMEILRAKLYEIQLKEANAKERSQRLMQVGSGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYNF R TDHR+ + + LE +L G +DD+I L Q +M+ +E Sbjct: 309 EKIRTYNFKDNRTTDHRLG-SNFALEPILAGQLDDVIYACLAQEQKRMLEDFNE 361 >gi|302542528|ref|ZP_07294870.1| peptide chain release factor 1 [Streptomyces hygroscopicus ATCC 53653] gi|302460146|gb|EFL23239.1| peptide chain release factor 1 [Streptomyces himastatinicus ATCC 53653] Length = 356 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 213/349 (61%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + DL A +E R+++ + L + YA ++PII + Q + + Sbjct: 3 EAVEDLIGEHAALEKRLADPAVHADQREAKRLNKRYAELTPIIDTYRDWKQTGDDIETAQ 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D ++ E EL + + LL+P+D DDK ILE++AG GG Sbjct: 63 ELAQDDPDFADEVKEL-------ELRRAELTDRLRLLLVPRDPSDDKDVILEVKAGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL RMY RYA WK E++ ++++D GGYK++ + G+GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERIGWKTEIIDANESDLGGYKDVQVAVKAKGTIEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEIGPNDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QN+ +A+++LR+RL ++ E S R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVSCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREASDARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSERIRTYNF + RI+DHR+ Y L+ VL G + +I + Sbjct: 296 QVRTVDRSERIRTYNFPENRISDHRVGFKAYNLDQVLDGELAPVIQACV 344 >gi|145297980|ref|YP_001140821.1| peptide chain release factor 2 [Aeromonas salmonicida subsp. salmonicida A449] gi|166223622|sp|A4SJK1|RF2_AERS4 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|142850752|gb|ABO89073.1| peptide chain release factor 2 [Aeromonas salmonicida subsp. salmonicida A449] Length = 365 Score = 241 bits (614), Expect = 1e-61, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 169/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E ++ ++ I + Q ++ + L ++ Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERVSLENVVGTIDVLTQGAEDVEMLVSLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A + ++ + + D C ++I++G+GG+EA Sbjct: 88 VEGEDEDTFNEAV-----AEADVLETKLVDLEFRRMFSGQHDGSDCYIDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ SD D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMYLRWGDAHGYKPELIELSDGDVAGIKSATVKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFCSVFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTG++V +++SQH+N+ + MK L+A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPTGVVVQCQNDRSQHKNKDQCMKQLKAKLYELEIQKQNAEKQALEETKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLK 362 >gi|296138963|ref|YP_003646206.1| peptide chain release factor 1 [Tsukamurella paurometabola DSM 20162] gi|296027097|gb|ADG77867.1| peptide chain release factor 1 [Tsukamurella paurometabola DSM 20162] Length = 362 Score = 241 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 214/360 (59%), Gaps = 21/360 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ ++ +E +MS+ + K+ + +A ++PI++ + +++ + Sbjct: 9 IDDILAEYSGLEQQMSDPALHNDASAARKVGKRFAELAPIMATHRKLEAAREDRAAAQEL 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D +S ++ + ++I LE ++ LL P+D D +LE+++G GG E+ Sbjct: 69 AADDSSFADEVTVL-------TEQIDALEQQLTDLLAPRDPHDSDDVVLEVKSGEGGEES 121 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG---------VFSRM 176 ALF GDL RMY RYA R WKVE L ++ +D GGYK+ I RG V++RM Sbjct: 122 ALFAGDLARMYLRYAEQRGWKVETLGATYSDLGGYKDATFAIKSRGPGADGAIDGVWARM 181 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVPATE+ GR+HTSAA V V PE E +V I D+RID R+SG GGQ Sbjct: 182 KFEGGVHRVQRVPATESQGRIHTSAAGVLVYPEPDEVEEVQIDESDLRIDVYRSSGKGGQ 241 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PT I+V +E+SQ QN+ RAM+VL ARL + + S +R Sbjct: 242 GVNTTDSAVRITHLPTNIVVTCQNERSQLQNKARAMQVLAARLQALREEEAEAAASDSRA 301 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 QI + DRSERIRTYNF + RI DHRI + L+ VL G +D +++ L A + + + Sbjct: 302 AQIRTVDRSERIRTYNFPENRIADHRIGFKAHNLDQVLDGELDPLLDALQAADRQARLEA 361 >gi|262274920|ref|ZP_06052731.1| peptide chain release factor 2 [Grimontia hollisae CIP 101886] gi|262221483|gb|EEY72797.1| peptide chain release factor 2 [Grimontia hollisae CIP 101886] Length = 347 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 176/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L E A++ ++ I Q + +L + Sbjct: 10 DAKKERLEEVNAELEQPDVWNDPERAQALGRERASLEAVVETIDQLAQGGEYITELLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ ++ + ++ + + D C ++++AG+GG+EA Sbjct: 70 VEENDQETFDEIEPE-----LNDLEDKLAKLEFRRMFSGDHDASDCYIDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K EV+ S+ D G K ISG + ++ E+GVHR+ Sbjct: 125 DWTSMMLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATVRISGEYAYGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ + PE E D+DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 185 RKSPFDSGGRRHTSFASAFIYPEVDENIDIDINPADLRIDVYRASGAGGQHVNTTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G Sbjct: 245 ITHIPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANEAAKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLK 344 >gi|307265645|ref|ZP_07547198.1| peptide chain release factor 1 [Thermoanaerobacter wiegelii Rt8.B1] gi|306919289|gb|EFN49510.1| peptide chain release factor 1 [Thermoanaerobacter wiegelii Rt8.B1] Length = 246 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 147/244 (60%), Positives = 189/244 (77%), Gaps = 1/244 (0%) Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 +EIRAG GG EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G + Sbjct: 1 MEIRAGAGGEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGAY 60 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+ESGVHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DI+ID R+ G G Sbjct: 61 SRLKYESGVHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPSDIKIDVFRSGGHG 120 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + Sbjct: 121 GQSVNTTDSAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAET 180 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 RK Q+G+G+RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + Sbjct: 181 RKSQVGTGERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKL 240 Query: 353 GSAS 356 + + Sbjct: 241 KNMN 244 >gi|298252617|ref|ZP_06976411.1| protein chain release factor A [Gardnerella vaginalis 5-1] gi|297532981|gb|EFH71865.1| protein chain release factor A [Gardnerella vaginalis 5-1] Length = 366 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 144/355 (40%), Positives = 203/355 (57%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + +IE RM DA KL +A + I++ Y Q + + + + D Sbjct: 18 EEYRDIESRMGSPEVASNPDAIRKLGRRHAELGSIVNAYLNYKQLCDDFEAANEMASD-- 75 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + A+ I +L L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 76 -DPDFAEEAKRLEEQIPAAKEKL----RTALIPRDPDDARDMIMEIKAGTGGEEAALFAG 130 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W + S + + GG K++ I GV++ MK+E GVH Sbjct: 131 DLLRMYMRYAEKRGWTTVIQSENSTELGGVKDVQLAIRAKGTPAPEDGVWASMKYEGGVH 190 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 191 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 250 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 251 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 310 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + A Sbjct: 311 DRSERIRTYNFPENRIVDHRTNYKAYNLDQVLDGDLQPVIDSDIQADEADRLAQA 365 >gi|168830308|gb|ACA34405.1| PrfA [uncultured bacterium pTW2] Length = 360 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 161/338 (47%), Positives = 231/338 (68%), Gaps = 10/338 (2%) Query: 25 ESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 + ++ + L+ E+A + P+ ++ ++ +++ + SD E+ LA+ Sbjct: 25 DPGTIADAERFRALSREFAQLEPVAVALAAENRAQRDLAAAQAM----RSDPELGGLAEE 80 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 E+ A ++ELE+E+ L+ +D DD + LE+RAGTGG EAA+F GDLFRMY RYA Sbjct: 81 EIAAANARLQELESELMAQLVRRDPRDDGNLYLEVRAGTGGDEAAIFAGDLFRMYARYAE 140 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + WK+EV S+S + GGYKEIVA + GRG +S++KFESG HRVQRVP TE+ GR+HTSA Sbjct: 141 RQGWKLEVESASVGEHGGYKEIVARVEGRGAYSKLKFESGTHRVQRVPDTESQGRIHTSA 200 Query: 202 ATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSE 259 ATVA++ +++++ ++I D+RIDT R+SG+GGQHVN TDSA+RITH+P+G++V +E Sbjct: 201 ATVAIIAEDSSDVAIEINPADLRIDTFRSSGAGGQHVNKTDSAIRITHLPSGVVVENQTE 260 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQH NR +AMK LRA L + E R ++ +RKLQ+GSGDRS+RIRTYN+ QGRITDH Sbjct: 261 RSQHANRDKAMKRLRAMLVEAETSRREAAQAQDRKLQVGSGDRSQRIRTYNYPQGRITDH 320 Query: 320 RI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 R+ LTLY L VL+G +D +I L QA + Sbjct: 321 RVEGLTLYDLPNVLEGNLDALIERLAREQQADELARLG 358 >gi|197294284|ref|YP_001798825.1| Protein chain release factor A [Candidatus Phytoplasma australiense] gi|226739118|sp|B1V950|RF1_PHYAS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|171853611|emb|CAM11482.1| Protein chain release factor A [Candidatus Phytoplasma australiense] Length = 354 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 145/351 (41%), Positives = 223/351 (63%), Gaps = 2/351 (0%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL-HTVI 66 ++ ++ ++ ++ + ++ S+ I + + + + PI+ Y +++ ++ + Sbjct: 4 RLKKIQQKYQNLQQDLLQNQSISNKINIFKNLSKLEPIVELFQQYLTLEEQLTNITKALN 63 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D D EI +LAQ E + ++ + L N++ LLLP+D +D K+ ILEI+ GG+EA Sbjct: 64 QDQIEDKEILELAQKEKETLSQQKKVLWNQLRILLLPQDPEDQKNVILEIKGAVGGNEAN 123 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF DL R Y +YA +KWKVE+L+ + GG + ISG+ ++S +K+ESGVHRVQ Sbjct: 124 LFAADLLRTYMKYAESKKWKVEILNLHPSIKGGLSSVELLISGQNIYSFLKYESGVHRVQ 183 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVPATE GR+HTS A V VLPEA E+++ I DIR DT +SG GGQ VNTT SAVR+ Sbjct: 184 RVPATEVQGRIHTSTAIVLVLPEAKEVEIKIDWNDIRTDTFNSSGPGGQSVNTTKSAVRL 243 Query: 247 THIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 +H+P+GI + KSQH+N+ +A +L+AR+Y+ + +RK +G+GDRSE+ Sbjct: 244 SHLPSGISVACQEGKSQHENKEKAFTLLKARIYNQILNAKQEAENKHRKSLVGTGDRSEK 303 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 IRTYN+ Q RITDHRI LTL KL+ +++G +D II PL+ A Q + + + Sbjct: 304 IRTYNYPQNRITDHRIGLTLQKLDIIMEGKLDFIIEPLIDATQKEKLVQSE 354 >gi|284032945|ref|YP_003382876.1| peptide chain release factor 1 [Kribbella flavida DSM 17836] gi|283812238|gb|ADB34077.1| peptide chain release factor 1 [Kribbella flavida DSM 17836] Length = 359 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 151/359 (42%), Positives = 220/359 (61%), Gaps = 18/359 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + LK +A++E +MS+ ++ + YAA++P++ + Q + + Sbjct: 3 EAVQTLKAEYADLERQMSDPELHSDQANARRVGKRYAALAPVVRTYDEWLQTADDIEAAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + + ++ + +E EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAAEDPAFADEA-------VKLEARREELTEKLRLLLVPRDAGDDKDAILEIKAGEGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL +MY ++A + WK EVL S+++D GGYK I + G ++++ Sbjct: 116 ESALFAGDLLKMYLKFAETQNWKTEVLDSAESDLGGYKSITVAVKAKGTPEPGEAPYAKL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFE GVHRVQRVP TE+ GR+HTSAA V VLPEA ++DV+I D+RID R+SG GGQ Sbjct: 176 KFEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEDVDVEIDPNDLRIDVFRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V+ +EKSQ QNR +AM+VLR+RL ++ E S R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVSMQNEKSQLQNREQAMRVLRSRLLAAAQEAADQEASDARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 QI + DRSERIRTYNF + R +DHR+ + L+ VL G + +I L A A + + Sbjct: 296 QIRTVDRSERIRTYNFPENRFSDHRVGYKAHNLDQVLGGDLAPVIQALTDADMAARLAA 354 >gi|218196470|gb|EEC78897.1| hypothetical protein OsI_19275 [Oryza sativa Indica Group] gi|222630945|gb|EEE63077.1| hypothetical protein OsJ_17885 [Oryza sativa Japonica Group] Length = 368 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 164/356 (46%), Positives = 245/356 (68%), Gaps = 3/356 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + +++ ++ R A ++ ++++ S + Y + +E + + I K++E + L Sbjct: 12 VMEQRMKLIEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGL 71 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +++ + + + R++A E+L +E ++L++++ LLPKD D++ CILE+RAGTGG Sbjct: 72 KSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGG 131 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA+LF D+F+MYE+Y+ WK + + ++ GYKE TISG G + ++KFESG+ Sbjct: 132 EEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGI 191 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQ VNTTDS Sbjct: 192 HRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDS 251 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG +V E+SQHQN+ +A+KVLRARLY++ER R+ +RS R QIGSGD Sbjct: 252 AVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSKLRSEQIGSGD 311 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 RSERIRTYNF QGR+TDHR+ +T + +E V++G +D I+ LL ++ I S + Sbjct: 312 RSERIRTYNFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMDAIASFA 367 >gi|331695519|ref|YP_004331758.1| peptide chain release factor 1 [Pseudonocardia dioxanivorans CB1190] gi|326950208|gb|AEA23905.1| Peptide chain release factor 1 [Pseudonocardia dioxanivorans CB1190] Length = 366 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 204/355 (57%), Gaps = 18/355 (5%) Query: 10 CDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L A++EL +++ +L YA I P+++ + + + Sbjct: 13 DALLAEHADLELMLADPAVHADPARARRLGRRYAEIGPVVAVAKELASVRDDLAAARELA 72 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E + + LE + LL+P+D D +LE+++G GG E+A Sbjct: 73 ADD-------PTFGAEADDLAARVPALEARLAELLVPRDPHDADDVVLEVKSGEGGEESA 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR-----GVFSRMKFESG 181 LF GDL RMY R+A R W E+L ++ +D GGYK++ ++ R GV+S +KFE G Sbjct: 126 LFAGDLVRMYTRFAESRGWSTEILDATTSDLGGYKDVTLSVRARVPAADGVWSALKFEGG 185 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEID--VDIPLEDIRIDTMRASGSGGQHVNT 239 VHRVQRVP TE+ GR+HTSAA V V P+ D ++I D+R+D R+SG GGQ VNT Sbjct: 186 VHRVQRVPVTESQGRIHTSAAGVLVYPDTGADDAGIEIDDNDLRVDVFRSSGHGGQSVNT 245 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QNR RAM+VLR+RL + + A S R+ Q+ Sbjct: 246 TDSAVRITHLPTGIVVSCQNERSQLQNRARAMEVLRSRLQALAEEEAAARASDARRSQVR 305 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + DRSERIRTYNF + RI DHR+ + L VL G + D+I L+ A +A+ + Sbjct: 306 TVDRSERIRTYNFPENRIADHRVGYKAHNLSAVLDGDLGDVIAALVAADRAETVA 360 >gi|313903604|ref|ZP_07836994.1| bacterial peptide chain release factor 2 (bRF-2) [Thermaerobacter subterraneus DSM 13965] gi|313466157|gb|EFR61681.1| bacterial peptide chain release factor 2 (bRF-2) [Thermaerobacter subterraneus DSM 13965] Length = 372 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 176/349 (50%), Gaps = 6/349 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + IE M+E D + + + + + Y+ ++ +DL Sbjct: 1 MIFDLAGKRREIERIEQAMTEPGFWDDPERAQHQVRQLKVLKGPVERYEALDRQLEDLQV 60 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++++ E+ ++ E ++ LL D I+ + G GG+E Sbjct: 61 LAELAAEEADV--SVIPELEEGIAQVEEGLRQLELELLLTGPYDGYDAIVSLHPGAGGTE 118 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L+RMY R+A R ++VEVL + ++ G K + + G + ++ E GVHR Sbjct: 119 SQDWAQMLWRMYTRWAEDRGYQVEVLDLLEGEEAGIKSVTFAVRGPNAYGYLRSEHGVHR 178 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+GR HTS A+V VLP+ +++I ED+RID RA G GGQHVN T+SA Sbjct: 179 LVRISPFDAAGRRHTSFASVDVLPDLGDSPEIEIRPEDLRIDVFRAGGHGGQHVNKTESA 238 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI H+PTGI+ +E+SQH NR AMK+L+ARL ++ E +A R +G Sbjct: 239 VRIVHLPTGIVATCQNERSQHSNRETAMKILKARLARYYEEQRLKEIAALR-GDVGEIAW 297 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F + DHR + + ++ V+ G +D IN L A+ Sbjct: 298 GNQIRSYVFQPYTLVKDHRTGVEVGNVQAVMDGQLDVFINAYLKWEAAR 346 >gi|39546356|ref|NP_461957.2| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|267995195|gb|ACY90080.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|323131397|gb|ADX18827.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 358 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q + L + Sbjct: 21 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA 80 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 81 VEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 135 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K EV+ S+ + G K ISG + ++ E+GVHR+ Sbjct: 136 DWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLV 195 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 196 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVR 255 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A K IG G Sbjct: 256 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG-- 313 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 314 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 356 >gi|271499213|ref|YP_003332238.1| hypothetical protein Dd586_0640 [Dickeya dadantii Ech586] gi|270342768|gb|ACZ75533.1| hypothetical protein Dd586_0640 [Dickeya dadantii Ech586] Length = 365 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEMIVDTIDQMVQGLDDVAGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + ++ + + D C L+++AG+GG+EA Sbjct: 88 VEADDEETFNEA-----IAELDLLEDKLGQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAESKGFKTEIIEESEGEVAGIKSATIKIMGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQALEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKA 363 >gi|251790993|ref|YP_003005714.1| hypothetical protein Dd1591_3423 [Dickeya zeae Ech1591] gi|247539614|gb|ACT08235.1| hypothetical protein Dd1591_3423 [Dickeya zeae Ech1591] Length = 365 Score = 240 bits (612), Expect = 2e-61, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEMIVDTIDQMVQGLDDVAGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D A ++ ++ + + D C L+++AG+GG+EA Sbjct: 88 VEEDDEDTFNDTV-----AELDQLESKLGQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAESKGFKTEIIEESEGEVAGIKSATIKIMGDYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKA 363 >gi|295697362|ref|YP_003590600.1| hypothetical protein Btus_2812 [Bacillus tusciae DSM 2912] gi|295412964|gb|ADG07456.1| hypothetical protein Btus_2812 [Bacillus tusciae DSM 2912] Length = 382 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 123/373 (32%), Positives = 186/373 (49%), Gaps = 32/373 (8%) Query: 9 ICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAA---ISPIISKI 49 + DL R EI E RM+ + D + A + ++ ++ Sbjct: 12 LHDLVERLDEIGRSLDLAGKKKQIAGMEQRMAAADFWDDQEGAQKVIAEVNRLKDVVERV 71 Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + ++ + L + + ++ + ++ + + L+ D Sbjct: 72 EGLRSRVEDLEVLWELGHEEGDETVLGEIEAGITQVHSQLGQ-----FELELMLSGPYDR 126 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 + I+E+ G GG+E+ + L RMY R+A R +KVE L ++ G K + I G Sbjct: 127 NNAIVELHPGAGGTESQDWTAMLLRMYTRWAESRGYKVETLDYLPGEEAGVKSVTLLIKG 186 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMR 228 + +K E GVHR+ R+ +ASGR HTS A+V VLPE +DVDI ED++IDT R Sbjct: 187 HNAYGYLKAERGVHRLVRISPFDASGRRHTSFASVDVLPELDESVDVDIRPEDLKIDTYR 246 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG+GGQHVNTTDSAVRITHIPTGI+V SE+SQ +NR AMK+L ARLY+ R+ Sbjct: 247 SSGAGGQHVNTTDSAVRITHIPTGIVVTCQSERSQIKNRATAMKILAARLYERRRREQEE 306 Query: 288 ERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + +A R Q I G +IR+Y F + DHR + ++ V+ G ID I+ L Sbjct: 307 QIAALRGEQKEIAWG---SQIRSYVFHPYSMVKDHRTGVETGNVQAVMDGDIDAFIDAWL 363 Query: 345 TAHQAKMIGSASE 357 A + +E Sbjct: 364 RQRAAAQLDRDAE 376 >gi|227548000|ref|ZP_03978049.1| peptide chain release factor 1 [Corynebacterium lipophiloflavum DSM 44291] gi|227079906|gb|EEI17869.1| peptide chain release factor 1 [Corynebacterium lipophiloflavum DSM 44291] Length = 357 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 146/356 (41%), Positives = 215/356 (60%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D + + I+ +M + + + KL++ YA + PII+ + + ++ + + Sbjct: 8 VDDYVSEYEGIQAQMGDPDVAGDAEQFRKLSKRYAELQPIINVYNELSEARENYEAAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E + +E +I LE E+ LL P+D D I+EI+AG GG EA Sbjct: 68 ASEDKEFAEEA-------VRLEGDIARLEEELADLLAPRDEHDGDDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY++Y EVL +++D GG K++ + + +S++KFE Sbjct: 121 ALFAGDLARMYQKYCEKNGLSWEVLDLAESDLGGAKDMTVAVKSKTPSRDGAWSKLKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PEA E+ VDI +D+RID R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVYVFPEAEEVASVDIDEKDLRIDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PT I+V +E+SQ QNR RAM+VL+ARL +ER++ E + R Q+ Sbjct: 241 TDSAVRITHLPTNIVVTCQNERSQIQNRARAMQVLQARLDQLEREKADAEAAEGRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI+DHRIN L+ VL G +D++I+ L + + + + Sbjct: 301 TMDRSERIRTYNWPENRISDHRINYKANNLDSVLDGNMDELISALQKHERQERLEA 356 >gi|157363244|ref|YP_001470011.1| peptide chain release factor 1 [Thermotoga lettingae TMO] gi|157313848|gb|ABV32947.1| peptide chain release factor 1 [Thermotoga lettingae TMO] Length = 347 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 149/342 (43%), Positives = 218/342 (63%), Gaps = 11/342 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 M + I D+ + E+E ++S S ++ + + EY+ + + Q ++E Sbjct: 1 MKDIIESIIKDVNKKTIELEQKLSSSNLDIEQLREFSVEYSRLKEALEIYQQLKQVEEEM 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + S E A+ + I + ++ + I EIRAG Sbjct: 61 NFWQEAMKEDPSLEEDFLKARKQYEDIIS---------QLISHLLPFEEHNNVIFEIRAG 111 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EAALF DL+RMY RYA + W+VE+ D GG+KEIV + G+ + +K+E Sbjct: 112 TGGEEAALFAADLYRMYIRYAERKGWQVELSDFHDTGLGGFKEIVFFVKGKSAYKYLKYE 171 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE+SGR+HTS ATVAVLPE +++++ I +D++IDT +ASG GGQ+VN Sbjct: 172 SGVHRVQRVPVTESSGRIHTSTATVAVLPEVSDVEIHIDPKDLKIDTFKASGHGGQYVNK 231 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITH+PTGI+V SE+SQHQNR RA+ +LRA+LY++E++++ ++ S RK QIG Sbjct: 232 TESAVRITHLPTGIIVSCQSERSQHQNRERALVILRAKLYEIEQEKINSQLSNQRKNQIG 291 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 S +RSE+IRTYNF Q R+TDHRIN T Y+L+ +L G +D++I Sbjct: 292 SAERSEKIRTYNFPQNRVTDHRINYTTYRLQEILDGDLDELI 333 >gi|150021273|ref|YP_001306627.1| peptide chain release factor 1 [Thermosipho melanesiensis BI429] gi|149793794|gb|ABR31242.1| peptide chain release factor 1 [Thermosipho melanesiensis BI429] Length = 358 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 156/340 (45%), Positives = 221/340 (65%), Gaps = 10/340 (2%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 +E ++S + + K +E+Y+ + I+ Y + ++ E+ Sbjct: 18 LKFLEEKLSSQLTPEEIKKYSEKYSKMKEIVELSKKYLELEE---------EIELWKEEM 68 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + + E+ + + R++ E+ L+LPK+ K+ LEIRAGTGG EAALF DL RM Sbjct: 69 PEGFENEIEKLSDQQRKIMQELITLVLPKNEYSGKNVFLEIRAGTGGEEAALFAADLLRM 128 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y RY + +K E++ + D GGYKE+V I G+ V + +K+ESGVHRVQRVP TE+ G Sbjct: 129 YLRYVEKKNFKAEIVDENKTDLGGYKEVVVRIKGKNVGNLLKYESGVHRVQRVPTTESGG 188 Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R+HTS ATVAVLPE + ++++I DIRIDT RASG+GGQ+VN T+SAVRITHIPTGI+V Sbjct: 189 RIHTSTATVAVLPEVSNVEIEINPSDIRIDTYRASGAGGQYVNKTESAVRITHIPTGIVV 248 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 SE+SQ QN+ +AM +LRARLY ++ + A + S+NRK QIG+G+RSE+IRTYNF Q Sbjct: 249 TCQSERSQLQNKEQAMNILRARLYKLKLEEQAKKISSNRKSQIGTGERSEKIRTYNFPQN 308 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+TDHRIN T Y L+ VL G +D+ I L+ + I + Sbjct: 309 RVTDHRINYTSYNLQAVLDGELDEFITRLMRIDMLEQIEN 348 >gi|307129433|ref|YP_003881449.1| putative peptide chain release factor 2 [Dickeya dadantii 3937] gi|306526962|gb|ADM96892.1| putative peptide chain release factor 2 [Dickeya dadantii 3937] Length = 365 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I Q + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEMIVDTIDQMVQGLDDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D A ++ ++ + + D C L+++AG+GG+EA Sbjct: 88 VEEDDEDTFNDTV-----AELDQLESKLGQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K I G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAESKGFKTEIIEESEGEVAGIKSATIKIMGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQALEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKA 363 >gi|186476207|ref|YP_001857677.1| peptide chain release factor 2 [Burkholderia phymatum STM815] gi|184192666|gb|ACC70631.1| peptide chain release factor 2 [Burkholderia phymatum STM815] Length = 359 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E + ++ +S D ++ +DL + Sbjct: 22 DAKSVRLIEVNKELEDPNVWNDSQHAQALGKEKKLLEGVVDVLSSLDNDLRDTKDLFDMA 81 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + + + + + D + ++I+AG GG+EA Sbjct: 82 REENDEDTLVACEEDVAKLTTRVEDM-----EFRRMFSNPADPNNAFIDIQAGAGGTEAC 136 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL S+ D G K + G + ++ E+G+HR+ Sbjct: 137 DWASMLLRQYLRYCERKGFKTEVLEESEGDVAGIKSATIKVEGEYAYGFLRTETGIHRLV 196 Query: 187 RVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE E ++++ D+RIDT RASG+GGQH+N TDSAVR Sbjct: 197 RKSPFDSSGGRHTSFSSVFVYPEIDESFEIEVNPADLRIDTYRASGAGGQHINKTDSAVR 256 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIP+GI+V +++SQH+NR AM +L++RLY+ E ++ +E+ K +G G Sbjct: 257 ITHIPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEMRKRQSEQDKLEAGKSDVGWG-- 314 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 315 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDAFISASLKQ 357 >gi|13508100|ref|NP_110049.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129] gi|2500138|sp|P75420|RF1_MYCPN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|1674166|gb|AAB96123.1| peptide chain release factor 1 [Mycoplasma pneumoniae M129] Length = 359 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 211/348 (60%), Gaps = 4/348 (1%) Query: 9 ICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++E +++ + + +E P++ K + + + + ++ Sbjct: 11 VEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFKEFKRLIDQALEAEAIL- 69 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++N E+ D A+ E+ + + E E + LLLP D ++ K+ I+E+R GG E+ + Sbjct: 70 ENNELKELHDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRPAAGGDESCI 129 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F+ DLF MY + + + WK ++ G + ++G VF+++KFESGVHRVQR Sbjct: 130 FLADLFNMYRNFCSNKGWK-LQINEMIPSSVGLNFVSFEVNGVDVFAKLKFESGVHRVQR 188 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VPATE+ GRVHTS TVAVLP+ ++V I D+R+DT RASG+GGQHVN T+SAVRIT Sbjct: 189 VPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNRTESAVRIT 248 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V KSQ NR AMK+LRA+L++ + + ++ RK Q+GSGDR+E+I Sbjct: 249 HLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVGSGDRAEKI 308 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RTYN+ Q R+TDHRI LT+ KL ++ G +D+II L + + + + Sbjct: 309 RTYNYPQNRVTDHRIKLTVNKLNTIILGDLDEIIEALQADEKKQQLEN 356 >gi|260599230|ref|YP_003211801.1| peptide chain release factor 2 [Cronobacter turicensis z3032] gi|260218407|emb|CBA33491.1| Peptide chain release factor 2 [Cronobacter turicensis z3032] Length = 342 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q + L + Sbjct: 5 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVETLDQMSQGLDDVAGLLELA 64 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ ++ + + D C L+I+AG+GG+EA Sbjct: 65 VEADDEETFNEAVVE-----LDQLEAKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 119 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K ISG F ++ E+GVHR+ Sbjct: 120 DWASMLLRMYLRWAEARGFKTEIIEESEGEVAGLKSATIKISGDYAFGWLRTETGVHRLV 179 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 180 RKSPFDSGGRRHTSFSSAFVYPEVEDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 239 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 240 ITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQALEDNKSDIGWG-- 297 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 298 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 340 >gi|308187994|ref|YP_003932125.1| Peptide chain release factor 2 (RF-2) [Pantoea vagans C9-1] gi|308058504|gb|ADO10676.1| Peptide chain release factor 2 (RF-2) [Pantoea vagans C9-1] Length = 351 Score = 240 bits (611), Expect = 3e-61, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q ++ Q L + Sbjct: 14 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVQTLEQMSQGLEDVQGLLELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A + E+ + + D C ++++AG+GG+EA Sbjct: 74 VEAEDEETFNEAV-----AELDVLEGKLGELEFRRMFSGEYDSADCYIDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K + +SG F ++ E+GVHR+ Sbjct: 129 DWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGIKSVTIRVSGDYAFGWLRTETGVHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSGGRRHTSFSSAFIYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 249 ITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQALEDNKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 349 >gi|323526607|ref|YP_004228760.1| peptide chain release factor 2 [Burkholderia sp. CCGE1001] gi|323383609|gb|ADX55700.1| Peptide chain release factor 2 [Burkholderia sp. CCGE1001] Length = 367 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D R E+ + + + L E + + K++ ++ QDL + Sbjct: 30 DDKSRRLIEVNRELEDPDVWNDSKHAQALGREKKLLDDTVGKLTSLHNDLRDAQDLFEMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + A + + + ++ + + + D + L+I+AG GG+EA Sbjct: 90 REEGDDETLVACE-----ADAQALEQRVADMEFRRMFANPADPNNAFLDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL +D D G K I G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +VDI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+P+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 265 ITHMPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQAEQDKLEAGKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 365 >gi|297570956|ref|YP_003696730.1| peptide chain release factor 1 [Arcanobacterium haemolyticum DSM 20595] gi|296931303|gb|ADH92111.1| peptide chain release factor 1 [Arcanobacterium haemolyticum DSM 20595] Length = 370 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 136/360 (37%), Positives = 206/360 (57%), Gaps = 16/360 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + IE +M+ + KL YA + ++S+ +++ + + D+ +I Sbjct: 8 DAMVAEYQHIEEQMASPEVLARPEKLRSLGRRYAQLGRVVSRYRTWEKAEADLADIREII 67 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D+E+ + + + L+P+D DD + I+E++AG GG E+A Sbjct: 68 ELGGDDAELFEEELPRLEEAASTAA---ASLRDALIPRDPDDSRDAIVEVKAGEGGEESA 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI--------SGRGVFSRMKF 178 LF DL RMY+RYA + W V+ LS++ + GGYK+I + GV++ +KF Sbjct: 125 LFAADLVRMYQRYAESKGWSVQTLSATHTELGGYKDIQLAVKSSSIPEDPADGVWAHLKF 184 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 E+GVHRVQRVPATE+ GR+HTSAA V V +V + ++RID R+SG GGQ V Sbjct: 185 EAGVHRVQRVPATESQGRIHTSAAGVLVFAEVDEPEEVQVADNELRIDVFRSSGPGGQSV 244 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI V+ EKSQ +NR AM+VL ARL ++ + A + + R+ Q Sbjct: 245 NTTDSAVRITHLPTGITVSMQDEKSQIKNREAAMRVLLARLRQLQLEEQAAKEADQRRSQ 304 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSER+RTYNF + RI DHR + L+ VL G ++ +I L +A+ + A+ Sbjct: 305 VRTVDRSERVRTYNFPENRIADHRTGYKAHNLDAVLNGELEPVITSLREMDEAERLEQAA 364 >gi|120597725|ref|YP_962299.1| peptide chain release factor 2 [Shewanella sp. W3-18-1] gi|146294138|ref|YP_001184562.1| peptide chain release factor 2 [Shewanella putrefaciens CN-32] gi|120557818|gb|ABM23745.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella sp. W3-18-1] gi|145565828|gb|ABP76763.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella putrefaciens CN-32] Length = 352 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 15 DAKHERLEEVTRELESSDVWNEPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + + + D +C L+I++G+GG+EA Sbjct: 75 VEEEDEDTFNETTKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPADLRIDVYRASGAGGQHVNRTESAVR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + E+ + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNKDSAMKQLKAKLFELEMHKQNAEKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R ++ + VL G +D I L Sbjct: 308 -SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDKFIEASLK 349 >gi|187918069|ref|YP_001883632.1| peptide chain release factor 1 [Borrelia hermsii DAH] gi|238689283|sp|B2RZQ6|RF1_BORHD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119860917|gb|AAX16712.1| bacterial peptide chain release factor 1 [Borrelia hermsii DAH] Length = 357 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 159/354 (44%), Positives = 244/354 (68%), Gaps = 5/354 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++++ +E ++ + V Y K +EY + I +K Y+ + Sbjct: 1 MFLEKLSPIESKIKILEEKLQDINLVKNQKEYAKTVKEYNYLEKIKAKKDEYENILSQIN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + + E+++L + E+ + + E+E+ I LLL +D +D K+ I+EIRAGT Sbjct: 61 ENQKILSEEEN-LEMKELVKQELAHLNLKKDEVEHMIKILLLHQDENDSKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KE+ I G+ VF ++K ES Sbjct: 120 GGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKDVFKKLKHES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE++GR+ TSAATVAVLPE + D++I +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRVPITESNGRLQTSAATVAVLPEVEDTDIEINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY+ E + +RS +RK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYEFENLKKQEQRSNDRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 GDRSERIRTYNF Q R+TDHR N++LYKLE ++QG +D +++ L Q + + Sbjct: 300 GDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGELDFLLDTLALKFQEQSLK 353 >gi|72382938|ref|YP_292293.1| peptide chain release factor 1 [Prochlorococcus marinus str. NATL2A] gi|119361577|sp|Q46IT8|RF1_PROMT RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|72002788|gb|AAZ58590.1| bacterial peptide chain release factor 1 (bRF-1) [Prochlorococcus marinus str. NATL2A] Length = 365 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 223/354 (62%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ K+ F +EL++++ +L E + + P+++ ++E + Sbjct: 8 KRLETAKSSFQNLELQLADPDVASDPKQLETIARERSRLEPLVNDYLKLQIIEKECLEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+ LA+ E+ +E EL ++ LLPKD D++S +LEIRAG GG+ Sbjct: 68 GLVKESRDDKEMELLAREELQNLELSKNELIQKLTLALLPKDPRDERSVMLEIRAGAGGN 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA L+ GDL RMYERY W V+ +SS++ D GG++E++ ++ G V+S++KFE+GVH Sbjct: 128 EACLWAGDLARMYERYGQKLGWNVKPISSTEADMGGFREMIISVKGESVYSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPSTESQGRVHTSTATVAVMPEADPVEVKIESTDLEISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + + H P+GI + + E+SQ QNR RAM++LRA+L ++E + + R Q+G+GDR Sbjct: 248 IDLFHKPSGIRVFCTQERSQMQNRERAMEILRAKLLELELAEANAKERSARLSQVGTGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ + + LE VL G ++D+I + Q + + S Sbjct: 308 SEKIRTYNYKDNRTTDHRLGVN-FPLEQVLSGQLEDVIGACIAEEQKRQMEELS 360 >gi|258512512|ref|YP_003185946.1| hypothetical protein Aaci_2552 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479238|gb|ACV59557.1| conserved hypothetical protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 383 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 180/354 (50%), Gaps = 7/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++R A +E M+ D + + A ++ + S + + + QD + Sbjct: 27 DVAGKEHRIATLEALMAAPDFWDDPDRAQKIIAEMNGVKSVVDTMRRLESLLQDAEVALQ 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A+ LA + + E L+ D + ILE+ G GG+E+ Sbjct: 87 LAQEEDDHDLFAEANRLAEQLKSEMDE--FELQLMLSGEYDKNNAILELHPGAGGTESQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A +KVEVL ++ G K + + G + +K E GVHR+ R Sbjct: 145 WASMLLRMYTRWAEDHGYKVEVLDYLPGEEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + +ASGR HTS A+V V+PE + ++I E++RIDT R++G+GGQHVNTTDSAVR Sbjct: 205 ISPFDASGRRHTSFASVDVIPEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V SE+SQ QNR RAM++L++RL R+ E + R Q Sbjct: 265 ITHIPTGIVVTCQSERSQIQNRARAMEILKSRLAAKRREEREQELAQLRGEQ-KEIAWGS 323 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +IR+Y F + DHR N + V+ G ID I+ L A+ +E Sbjct: 324 QIRSYVFHPYSLVKDHRTNYETSNTQAVMDGEIDPFIHAYLRWQLAREQQRENE 377 >gi|32475815|ref|NP_868809.1| peptide chain release factor 1 [Rhodopirellula baltica SH 1] gi|81659907|sp|Q7ULT3|RF1_RHOBA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|32446358|emb|CAD76186.1| peptide chain release factor 1 [Rhodopirellula baltica SH 1] gi|327538345|gb|EGF25018.1| peptide chain release factor 1 [Rhodopirellula baltica WH47] Length = 360 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 145/355 (40%), Positives = 223/355 (62%), Gaps = 5/355 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQ 57 M + + RF ++E MS+ + +++ E+ ++ + ++ + + Sbjct: 1 MSGSIRDILEEKLARFEKLENDMSDPEVLSDGARMSATAREHGGLNRLANQYRTFKRLTD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E ++ D D + R++A+ E+ ++ KE + ++ L + + C++EIR Sbjct: 61 EIHQCVAMVADAE-DVDEREMAESEMESLRKERETVWEDLLSLTVGGEDSHRTRCVMEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF DLF MY RYA WK E++ +S + GG+K++ T+ G VF ++ Sbjct: 120 AGTGGDEAALFARDLFEMYTRYAEKVGWKTELMDASPTEMGGFKDVTLTLEGDNVFRDLQ 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +ESG HRVQRVP TE GRVHTSAATVAV+PE ++++D+ +D R D ASG GGQHV Sbjct: 180 YESGGHRVQRVPETETQGRVHTSAATVAVMPEPEDVEIDLKPDDYRKDFFGASGPGGQHV 239 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+TH TGI+V EKSQH+N +A++VL+AR+Y+ +R+ A +++ RK Sbjct: 240 NKTDSAVRLTHHETGIVVQCQDEKSQHKNLAKALRVLKARIYEKKREEEAAKQAEARKGL 299 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IGSGDRS+RIRTYNF Q R+TDHRINLT+YKL+ ++ G ++ + L+ + ++ Sbjct: 300 IGSGDRSQRIRTYNFPQNRLTDHRINLTIYKLDQIIAGDLNPVTEALIEYDRDQL 354 >gi|301633339|gb|ADK86893.1| peptide chain release factor 1 [Mycoplasma pneumoniae FH] Length = 359 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 134/348 (38%), Positives = 210/348 (60%), Gaps = 4/348 (1%) Query: 9 ICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++E +++ + + +E P++ K + + + + ++ Sbjct: 11 VEKIVELAEQLEKDLNKPDLTFEQIKAINKELKHKQPLVVKFKEFKRLIDQALEAEAIL- 69 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++N E+ D A+ E+ + + E E + LLLP D ++ K+ I+E+R GG E+ + Sbjct: 70 ENNELKELHDEAKKELERVRSVVPEYEEALKLLLLPIDENNQKNVIVELRPAAGGDESCI 129 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F+ DLF MY + + WK ++ G + ++G VF+++KFESGVHRVQR Sbjct: 130 FLADLFNMYRNFCTNKGWK-LQINEMIPSSVGLNFVSFEVNGVDVFAKLKFESGVHRVQR 188 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VPATE+ GRVHTS TVAVLP+ ++V I D+R+DT RASG+GGQHVN T+SAVRIT Sbjct: 189 VPATESKGRVHTSTVTVAVLPQLEAVEVHINPADLRVDTYRASGAGGQHVNRTESAVRIT 248 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V KSQ NR AMK+LRA+L++ + + ++ RK Q+GSGDR+E+I Sbjct: 249 HLPTGIVVSCQEGKSQFTNRDTAMKMLRAKLWEKAQNEQLSTQAGLRKSQVGSGDRAEKI 308 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RTYN+ Q R+TDHRI LT+ KL ++ G +D+II L + + + + Sbjct: 309 RTYNYPQNRVTDHRIKLTVNKLNTIILGDLDEIIEALQADEKKQQLEN 356 >gi|158312864|ref|YP_001505372.1| peptide chain release factor 1 [Frankia sp. EAN1pec] gi|238686837|sp|A8L3V1|RF1_FRASN RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|158108269|gb|ABW10466.1| peptide chain release factor 1 [Frankia sp. EAN1pec] Length = 356 Score = 240 bits (611), Expect = 4e-61, Method: Composition-based stats. Identities = 144/357 (40%), Positives = 210/357 (58%), Gaps = 18/357 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + A+IE R+++ + +LT YA ++ + ++ + + + Sbjct: 5 LAGMIAEHADIEKRLADPDIHNDPARARELTRRYAELATPVDLAQRLERVEGDLETAREF 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D RD + L L+P D DD + ILE++AG GG E+ Sbjct: 65 A---EQDPSFRDEVVALEASQADLAARLRAY----LVPVDPDDSRDAILEVKAGAGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY RYA R W+ ++L ++ +D GGY+++ + G+GVF R++F Sbjct: 118 ALFAGDLLRMYLRYAERRGWRTQILDANPSDLGGYRDVSVAVKSRGTAAPGQGVFGRLRF 177 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHRVQRVP TE++GR+HTSAA V VLPEAA++D+++ D+RID R+SG GGQ VN Sbjct: 178 EGGVHRVQRVPVTESAGRIHTSAAGVLVLPEAADVDIEVDPNDLRIDVFRSSGPGGQSVN 237 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTG++V +EKSQ QN+ AM++LRARL R++ +A R Q+ Sbjct: 238 TTDSAVRITHLPTGVVVSCQNEKSQLQNKESAMRILRARLLAAAREKAETAAAAARASQV 297 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSE++RTYNF + RI+DHRI + LE VL G +D +I L A + + Sbjct: 298 RTVDRSEKVRTYNFPENRISDHRIGYKAHNLEAVLDGDLDAVIEALTEADLESRMAA 354 >gi|197285860|ref|YP_002151732.1| peptide chain release factor 2 [Proteus mirabilis HI4320] gi|238693208|sp|B4F0M7|RF2_PROMH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|194683347|emb|CAR44054.1| peptide chain release factor 2 [Proteus mirabilis HI4320] Length = 365 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 182/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I +Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPEKAQALGKERSSLEAIVETIDQLEQGLEDVSGLLDLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E + A E+ + K++ +LE + + D C L+++AG+GG+EA Sbjct: 88 VEA-DDEETFNEAVAELEGLNKKLEQLE----FRRMFSGEYDSADCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ SD D G K I G + ++ E+GVHR+ Sbjct: 143 DWASMLMRMYLRWAESRGFKTEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTG++ +++SQH+N+ +AMK ++A+LY++E ++ ++ + K IG G Sbjct: 263 ITHVPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNADKQVMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 363 >gi|124026680|ref|YP_001015795.1| peptide chain release factor 1 [Prochlorococcus marinus str. NATL1A] gi|229470356|sp|A2C4X1|RF1_PROM1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|123961748|gb|ABM76531.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. NATL1A] Length = 365 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 141/354 (39%), Positives = 223/354 (62%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ K+ F +EL++++ +L E + + P+++ ++E + Sbjct: 8 KRLETAKSSFQNLELQLADPDVASDPKQLETIARERSRLEPLVNDYLKLQIIEKECLEAK 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D E+ LA+ E+ +E EL ++ LLPKD D++S +LEIRAG GG+ Sbjct: 68 GLVKESRDDKEMELLAREELQNLELSKNELIQKLTLALLPKDPRDERSVMLEIRAGAGGN 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA L+ GDL RMYERY W V+ +SS++ D GG++E++ ++ G V+S++KFE+GVH Sbjct: 128 EACLWAGDLARMYERYGQKLGWNVKPISSTEADMGGFREMIISVKGESVYSQLKFEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP+TE+ GRVHTS ATVAV+PEA ++V I D+ I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPSTESQGRVHTSTATVAVMPEADPVEVKIESTDLEISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 + + H P+GI + + E+SQ QNR RAM++LRA+L ++E + + R Q+G+GDR Sbjct: 248 IDLFHKPSGIRVFCTQERSQMQNRERAMEILRAKLLELEIAEANAKERSARLSQVGTGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ + + LE VL G ++D+I + Q + + S Sbjct: 308 SEKIRTYNYKDNRTTDHRLGVN-FPLEQVLSGQLEDVIGACIAEEQKRQMEELS 360 >gi|15642771|ref|NP_230312.1| peptide chain release factor 2 [Vibrio cholerae O1 biovar El Tor str. N16961] Length = 365 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 181/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +A+ ++ I D+ + + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWTQPERAQALGKERSALEAVVDTIDQLDRGVDDVEGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E D E+ +E ++ +LE + + D C L+++AG+GG+EA Sbjct: 88 IEAE-DQETFDEIGPELDELEAKLEQLE----FRRMFSGDHDSSDCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K EV+ S+ D G K I G + ++ E+GVHR+ Sbjct: 143 DWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATVRIIGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ + PE E D++I D+RID RASG+GGQHVNTT+SAVR Sbjct: 203 RKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRIDVYRASGAGGQHVNTTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G Sbjct: 263 ITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 362 >gi|224824516|ref|ZP_03697623.1| peptide chain release factor 2 [Lutiella nitroferrum 2002] gi|224603009|gb|EEG09185.1| peptide chain release factor 2 [Lutiella nitroferrum 2002] Length = 349 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 111/340 (32%), Positives = 176/340 (51%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +R E+ + + + L E + ++ I + +DL + + N Sbjct: 16 DRLEEVVRLTEDPDVWNDPKRAQDLGRERKQLEDVVLVIDRISGAVNDSRDLFDMAREEN 75 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + V E ++ + + D D +C L+I+AG GG+EA + G Sbjct: 76 D-----ADTILAVQDDLAEAEAKLAQLEFRRMFHDPMDPNNCFLDIQAGAGGTEAQDWAG 130 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY RYA + ++VE+L S+ + G ISG + ++ E GVHR+ RV Sbjct: 131 MLLRMYTRYAERKGFRVEILEESEGEVAGITSATLKISGEYAYGLLRTEVGVHRLVRVSP 190 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS ++V V PE ++I D+R+DT RASG+GGQH+N TDSAVRITH Sbjct: 191 FDSNARRHTSFSSVFVYPEVDDSFVIEINPADLRVDTYRASGAGGQHINKTDSAVRITHN 250 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V +++SQH+NR AM++LRA+LY++E K+ + + K +G G +I Sbjct: 251 PTGIVVQCQNDRSQHRNRDEAMQMLRAKLYELELKKRNEAKQALEDTKTDVGWG---HQI 307 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y F Q RI D R + + ++ V+ G +D I L Sbjct: 308 RSYVFDQSRIKDLRTSYEVGNIKSVMDGDLDGFIEESLKQ 347 >gi|91794477|ref|YP_564128.1| peptide chain release factor 2 [Shewanella denitrificans OS217] gi|91716479|gb|ABE56405.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella denitrificans OS217] Length = 352 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 175/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + K R E+ L + S + L +E +A+ ++ I D ++ + L + Sbjct: 15 ANKKERLEEVSLELESSAVWNEPERAQALGKERSALEAVVKTIDDLDSGLEDIEGLVELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + A E+ +E+ + +LE + + +D C L+I++G+GG+EA Sbjct: 75 IEE-DDEDTFNEASAELDELERRLEDLE----FRRMFSGPNDSADCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + ++RIDT RASG+GGQHVN T+SA+R Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDIEIDINPSELRIDTYRASGAGGQHVNKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH+PT +V S +SQH+N+ AMK L+A+LY++E + + + + K IG G Sbjct: 250 ITHLPTNTVVQCQSGRSQHKNKDSAMKQLKAKLYELEMMKQNVDKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVENRNTQTVLDGDLDKFIEASLK 349 >gi|323340175|ref|ZP_08080439.1| peptide chain release factor RF2 [Lactobacillus ruminis ATCC 25644] gi|323092366|gb|EFZ34974.1| peptide chain release factor RF2 [Lactobacillus ruminis ATCC 25644] Length = 358 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 183/345 (53%), Gaps = 10/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A+ E +M++ + + + + + +K ++Q ++ +DL ++ Sbjct: 12 DLDGLQEAIADNESKMADPDFWNNQEEAQKVINENNELKNKYDNFNQLEEAIEDLEVLLE 71 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + ++++ + + E LL D + ILE+ G GG+E+ Sbjct: 72 MVQEDDDDELVSELSEKFELAQKKMQE--YQLSLLLNGKYDKDNAILELHPGAGGTESQD 129 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + VE D+ G K + TISG + ++ E GVHR+ R Sbjct: 130 WGSMLLRMYTRWAEQHGFSVETDDYQAGDEAGIKSVTLTISGHNAYGYLRSEKGVHRLVR 189 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE +++VD+ EDI+++ R+SG+GGQH+N T SAVR+ Sbjct: 190 ISPFDSAGRRHTSFCSVNVMPELDDDVEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRL 249 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRS 303 HIPTGI+V + +++SQ QNR A K+LR++LY +E + +R+A + Q IG G Sbjct: 250 IHIPTGIVVSSQAQRSQFQNRATAEKMLRSKLYQMELEEQEKKRAAIQGEQLDIGWG--- 306 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + V+ G +D IN L + Sbjct: 307 SQIRSYVFHPYSMVKDHRTNYETGNISSVMDGDLDGFINAYLQWN 351 >gi|237747768|ref|ZP_04578248.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] gi|229379130|gb|EEO29221.1| peptide chain release factor 2 [Oxalobacter formigenes OXCC13] Length = 349 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ + + + K L +E ++ ++ ++ + +L + Sbjct: 12 AAKSDKLEQVNAELEDPDVWNDPKKAQDLGKEKKSLENVVLSLTRIKSGLDDAAELFEMA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D ++ + + +++ + + + + + D +C ++I+AG GG+EA Sbjct: 72 KEEQDDDTLKAVDDDTLELLDQIEK-----LEFRRMFSNPMDPCNCFIDIQAGAGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + R Y RY + + +L SD + G K + G + ++ E+GVHR+ Sbjct: 127 DWASMILRQYLRYCERKGFNATILEQSDGEVAGIKTATIKVEGDYAYGYLRTETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++S HTS ++ V PE I++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 187 RKSPFDSSNGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH PTGI+V +++SQH+NR A ++L++RL+++E ++ +E+ + K +G G Sbjct: 247 LTHAPTGIVVQCQNDRSQHRNRADAWEMLKSRLFELELRKRMSEQQKLEDSKTDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N + VL G +DD I L Sbjct: 305 -HQIRSYVLDNSRIKDLRTNHETGNTKAVLDGDLDDFILESLKQ 347 >gi|239928894|ref|ZP_04685847.1| peptide chain release factor 1 [Streptomyces ghanaensis ATCC 14672] gi|291437221|ref|ZP_06576611.1| peptide chain release factor 1 [Streptomyces ghanaensis ATCC 14672] gi|291340116|gb|EFE67072.1| peptide chain release factor 1 [Streptomyces ghanaensis ATCC 14672] Length = 355 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 144/349 (41%), Positives = 218/349 (62%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ +L + YA ++PI++ + Q + + Sbjct: 3 EAVEELVAEHADLEKKLADPSVHSDQANARRLNKRYAELTPIVATYRSWRQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E++ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVRELEQQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + G+GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKARGQVEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL + ++ E + R+ Sbjct: 236 VNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAMAQEEAEREAADARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G + +I + Sbjct: 296 QVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLGAVIQACV 344 >gi|242240700|ref|YP_002988881.1| hypothetical protein Dd703_3297 [Dickeya dadantii Ech703] gi|242132757|gb|ACS87059.1| hypothetical protein Dd703_3297 [Dickeya dadantii Ech703] Length = 365 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + D L +E +++ I+ I +Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPDRAQALGKERSSLEMIVDTIEQMNQGLEDVTGLLDLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ ++ + + D C ++++AG+GG+EA Sbjct: 88 VEEDDEETFNETIIE-----LDQLENKLGQLEFRRMFSGEYDSADCYIDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K EV+ S+ + G K + G + ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAESKGFKTEVIEESEGEVAGIKSATIKVVGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AM+ L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHIPTNIVTQCQNDRSQHKNKDQAMRQLKAKLYEFELQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKA 363 >gi|307729220|ref|YP_003906444.1| hypothetical protein BC1003_1175 [Burkholderia sp. CCGE1003] gi|307583755|gb|ADN57153.1| hypothetical protein BC1003_1175 [Burkholderia sp. CCGE1003] Length = 367 Score = 239 bits (610), Expect = 4e-61, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D R E+ + + + L E + + K++ D ++ QDL + Sbjct: 30 DDKSRRLIEVNRELEDPDVWNDSKHAQALGREKKLLDDTVGKLTSLDNDLRDTQDLFEMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + A + + + ++ + + + D + L+I+AG GG+EA Sbjct: 90 REEGDDETLLACE-----ADAQALEQRVADMEFRRMFANPADPNNAFLDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL +D D G K I G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +VDI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+P+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 265 ITHMPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQEEQDKLEAGKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 365 >gi|203284116|ref|YP_002221856.1| peptide chain release factor A [Borrelia duttonii Ly] gi|201083559|gb|ACH93150.1| peptide chain release factor A [Borrelia duttonii Ly] Length = 359 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 159/358 (44%), Positives = 245/358 (68%), Gaps = 6/358 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M +++ ++++ +E ++ + + K+ +EY + I K Y Sbjct: 1 MKMFL-EKLNPIESKIKILEEKLQDVNLIKNQKEYSKIIKEYNYLEKIKEKKDEYQHILN 59 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + ++ E++DL + E+ + + E+EN I LLL +D +DDK+ I+EIR Sbjct: 60 QINENQKILSEEDN-LEMKDLIKQEIAHLYSKKDEIENTIKILLLHQDENDDKNIIIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KE+ I G+ VF ++K Sbjct: 119 AGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKDVFKKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 ESGVHRVQR+P TE++G++ TSAATVAVLPE + D++I +D+RID R+SG+GGQHV Sbjct: 179 HESGVHRVQRIPITESNGKLQTSAATVAVLPEVEDTDIEINDKDLRIDVYRSSGAGGQHV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+ +E+SQH+N+ +AMK+LRARLY++E + +RS +RK Q Sbjct: 239 NTTDSAVRITHLPTGIVAQCQNERSQHKNKEQAMKILRARLYELENLKKQEQRSNDRKQQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYNF Q R+TDHR N++LYKLE ++QG +D ++N L Q + + + Sbjct: 299 VGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGELDSLLNTLALKFQEQSLKN 356 >gi|256751358|ref|ZP_05492237.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus CCSD1] gi|256749740|gb|EEU62765.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus CCSD1] Length = 246 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 147/244 (60%), Positives = 189/244 (77%), Gaps = 1/244 (0%) Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 +EIRAG GG EAALF DLFRMY YA + WKVE++SS++ D GG+KE++ ISG+G + Sbjct: 1 MEIRAGAGGEEAALFAHDLFRMYSMYAEKKGWKVEIMSSNETDIGGFKEVILNISGKGSY 60 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+ESGVHRVQRVP TEA GR+HTS ATVAVLPE E+DV+I DI+ID R+ G G Sbjct: 61 SRLKYESGVHRVQRVPTTEAGGRIHTSTATVAVLPEVEEVDVEINPNDIKIDVFRSGGHG 120 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVR+THIPTGI+V E+SQ QNR RA+K+LRA+LY++ + E + Sbjct: 121 GQSVNTTDSAVRVTHIPTGIVVTCQDERSQIQNRERALKILRAKLYEMALQEQQREIAET 180 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 RK Q+G+G+RSERIRTYNF QGR+TDHRI LTLY+L+ VL G +D+II+ L+ QA+ + Sbjct: 181 RKSQVGTGERSERIRTYNFPQGRVTDHRIGLTLYRLQEVLDGDLDEIIDALILNDQAEKL 240 Query: 353 GSAS 356 + + Sbjct: 241 KNMN 244 >gi|217974576|ref|YP_002359327.1| hypothetical protein Sbal223_3420 [Shewanella baltica OS223] gi|254790920|sp|B8E5Q1|RF2_SHEB2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|217499711|gb|ACK47904.1| hypothetical protein Sbal223_3420 [Shewanella baltica OS223] Length = 365 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 28 DAKNERLEEVTRELESSEVWNDPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + D +C L+I++G+GG+EA Sbjct: 88 IEEEDEDTFNETSKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RIDT RASG+GGQHVN T+SA+R Sbjct: 203 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPSDLRIDTYRASGAGGQHVNKTESAIR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + + + + K IG G Sbjct: 263 ITHLPTNTVVQCQNDRSQHKNKDAAMKQLKAKLFELEMLKQNADKQAAEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLK 362 >gi|323356873|ref|YP_004223269.1| protein chain release factor A [Microbacterium testaceum StLB037] gi|323273244|dbj|BAJ73389.1| protein chain release factor A [Microbacterium testaceum StLB037] Length = 368 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 199/361 (55%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L + EIEL +++ + YA ++ I+ + + + Sbjct: 13 ESVRGLIDEHREIELELNDPAVHADAARAKRVNRRYAELNRIVHAYQAWVSASDDLEAAR 72 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D + + L LL+P+D DD + I+EI+ G GG+ Sbjct: 73 ELARE---DEAFAAEIPALEERVSETQERL----RRLLIPRDPDDARDVIMEIKGGEGGA 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 E+ALF DL RMY +YAA WK E+L +++D GGYK++ I +GV++ +K Sbjct: 126 ESALFAADLLRMYLQYAASMGWKTELLERTESDLGGYKDVQVAIKGSSSDPAQGVWAHLK 185 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTS V V PE E + I D++ID R+SG GGQ Sbjct: 186 YEGGVHRVQRVPATESQGRIHTSTTGVLVFPEVDEPEEVAIDPNDLKIDVFRSSGPGGQS 245 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V+ +EKSQ QNR M+VLRARL +++ + R+ Sbjct: 246 VNTTDSAVRITHVPTGIVVSMQNEKSQLQNREAGMRVLRARLLAKQQEERDAVAADARRS 305 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI DRSERIRTYNF + RI DHR Y L+ V+ G + II +TA + + + Sbjct: 306 QIRGMDRSERIRTYNFPENRIADHRTGYKAYNLDQVMDGALGPIIESAITADEEARLAAL 365 Query: 356 S 356 + Sbjct: 366 A 366 >gi|261338133|ref|ZP_05966017.1| peptide chain release factor 1 [Bifidobacterium gallicum DSM 20093] gi|270276761|gb|EFA22615.1| peptide chain release factor 1 [Bifidobacterium gallicum DSM 20093] Length = 362 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 138/353 (39%), Positives = 200/353 (56%), Gaps = 20/353 (5%) Query: 14 NRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE RM++ KL +A ++ I+ Y + + + + Sbjct: 14 EEYRNIEQRMAQPDVASDPNAMRKLGRRHAELAGIVGPYQRYRSMIDDLEAAREMAAE-- 71 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + A+ ++ L L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 72 -DPDFAEEAKRLETQLDDAAEAL----RTALIPRDPDDARDMIMEIKAGTGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYTRYAEKRGWSVTIQSENSTELGGVKDVQLAIRAKGTVAPEDGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDVQADEADRLA 359 >gi|302554164|ref|ZP_07306506.1| peptide chain release factor 1 [Streptomyces viridochromogenes DSM 40736] gi|302471782|gb|EFL34875.1| peptide chain release factor 1 [Streptomyces viridochromogenes DSM 40736] Length = 358 Score = 239 bits (610), Expect = 5e-61, Method: Composition-based stats. Identities = 145/352 (41%), Positives = 216/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVAELVAEHADLEKKLADPSVHADQANARKLNKRYAELTPIVATYRSWTQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E++ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKDLEQQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA EIDV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEIDVEINPNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G + +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLGAVIQACV 347 >gi|121603978|ref|YP_981307.1| peptide chain release factor 2 [Polaromonas naphthalenivorans CJ2] gi|120592947|gb|ABM36386.1| bacterial peptide chain release factor 2 (bRF-2) [Polaromonas naphthalenivorans CJ2] Length = 347 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 167/340 (49%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+ + + D +L E ++ ++ + +Q+ + +L + D N Sbjct: 14 RKLNEVNAALEDPKVWDNPKRAQELGREKKSLEDVVLILDRLEQELSDNTELFEMSKDDN 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ +R + + + + + + D +C L+I+AG GG+EA + Sbjct: 74 DEAGMRAIEGEAAKVAAEVEKM-----EFRRMFNNPADPLNCFLDIQAGAGGTEACDWAS 128 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L R Y +YA + +K + S D G K I G F ++ E+GVHR+ R Sbjct: 129 MLLRQYLKYAERKGFKTTIEDESAGDTAGIKGATIKIEGEYAFGLLRTETGVHRLVRKSP 188 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++SG HTS A+V V PE + ++DI D+R DT RASG+GGQH+N TDSAVR+THI Sbjct: 189 FDSSGGRHTSFASVFVYPEIDDSIEIDINPADVRTDTYRASGAGGQHINKTDSAVRLTHI 248 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V +SQH NR A K LR+RLYD E ++ + + K +G G +I Sbjct: 249 PTGIVVQCQEGRSQHGNRDVAWKRLRSRLYDFELRKQQEAQQKLEDTKTDVGWG---HQI 305 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R N + VL G +D I L Sbjct: 306 RSYVLDNSRIKDLRTNYETSATQKVLDGDLDPFIEASLKQ 345 >gi|32267276|ref|NP_861308.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449] gi|46576742|sp|Q7VFA0|RF1_HELHP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|32263329|gb|AAP78374.1| peptide chain release factor 1 [Helicobacter hepaticus ATCC 51449] Length = 355 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 167/359 (46%), Positives = 240/359 (66%), Gaps = 9/359 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + ++ + R+ EI +S ++ +L++E + I I Y + Sbjct: 1 MLIDKLKPIVARYDEISSLLSSESVLSNIKQLTELSKEQSDIESIAQNAKTYFSILENIV 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ D E+ +LA+ E+ +E LE EI LL+PKD +D+K+ LEIRAGT Sbjct: 61 QNKALLE----DKELGELAKEELKDLESAKATLEEEIKLLLIPKDPNDNKNIYLEIRAGT 116 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA +FVGDLF+ Y RYA L+KWKVE++SS++N+ GGYKE++A + G G +S++KFE Sbjct: 117 GGDEAGIFVGDLFKAYCRYADLQKWKVEIISSNENNVGGYKEVIALVKGNGAYSKLKFEG 176 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE+ GR+HTSA TVA++PE +++++I D++ID R+ G GGQ VNTT Sbjct: 177 GTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEININPNDLKIDVFRSGGHGGQSVNTT 236 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTGI V+ EKSQH+N+ +A+K+L+ARLY+ E + + RK Q+GS Sbjct: 237 DSAVRITHIPTGISVSMQDEKSQHKNKDKALKILKARLYEAELEAQNAQNKEARKTQVGS 296 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYN+ Q R+TDHRI LTLY LE ++ G +D+ INPL+ Q++ +G+ + Sbjct: 297 GDRSERIRTYNYPQNRLTDHRIGLTLYSLEEIMLGGLLDEFINPLIAHAQSQAMGNIEQ 355 >gi|312959346|ref|ZP_07773863.1| peptide chain release factor 2 (RF-2) [Pseudomonas fluorescens WH6] gi|311286063|gb|EFQ64627.1| peptide chain release factor 2 (RF-2) [Pseudomonas fluorescens WH6] Length = 430 Score = 239 bits (609), Expect = 5e-61, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 173/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + +L E AA++ I+ + + + +DL + Sbjct: 93 DQKHERLTEVNRELEDPSVWNKPEYAQELGRERAALAQIVDTLDELNTGLADCRDLLDMA 152 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + D+ A + E ++ + + D + L+I+AG+GG+EA Sbjct: 153 VEEDDEGAVGDVV-----AELARLEENLAKLEFRRMFSHEMDPNNAYLDIQAGSGGTEAQ 207 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + ++ S + G K I G F ++ E GVHR+ Sbjct: 208 DWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 267 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 268 RKSPFDSGNRRHTSFSAVFVSPEIDDKVEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 327 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY+ E ++ + + K IG G Sbjct: 328 ITHVPTNTVVSCQNERSQHANKDTAMKMLRAKLYEQEMQKRNAASQALEDTKSDIGWG-- 385 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 386 -HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLEASLK 427 >gi|113969170|ref|YP_732963.1| peptide chain release factor 2 [Shewanella sp. MR-4] gi|114048688|ref|YP_739238.1| peptide chain release factor 2 [Shewanella sp. MR-7] gi|113883854|gb|ABI37906.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella sp. MR-4] gi|113890130|gb|ABI44181.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella sp. MR-7] Length = 352 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 15 DAKHERLEEVSRELESSEVWNEPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + + + D +C L+I++G+GG+EA Sbjct: 75 IEEEDEDTFNETTKELDYLESRLAE-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPADLRIDVYRASGAGGQHVNRTESAVR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + E+ + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNKDSAMKQLKAKLFELEMHKQNAEKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R ++ + VL G +D I L Sbjct: 308 -SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDKFIEASLK 349 >gi|315268921|gb|ADT95774.1| Peptide chain release factor 2 [Shewanella baltica OS678] Length = 365 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 28 DAKNERLEEVTRELESSEVWNDPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + D +C L+I++G+GG+EA Sbjct: 88 IEEEDEDTFNETSKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RIDT RASG+GGQHVN T+SA+R Sbjct: 203 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPSDLRIDTYRASGAGGQHVNKTESAIR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + + + + K IG G Sbjct: 263 ITHLPTNTVVQCQNDRSQHKNKDAAMKQLKAKLFELEMLKQNADKQAAEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLK 362 >gi|269219853|ref|ZP_06163707.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 848 str. F0332] gi|269210758|gb|EEZ77098.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 848 str. F0332] Length = 365 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 140/368 (38%), Positives = 208/368 (56%), Gaps = 17/368 (4%) Query: 3 FLSHKQI-CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQE 58 S ++ + +IE MS ++ + K L YA + ++ Y + + + Sbjct: 1 MSSQIELAEQVLAEHRKIETEMSSPEALSSPEKMKSLGRRYAELGRVVRVYQAYRRAEAD 60 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + ++ D+E+ + + + L+P+D DD + I+E++A Sbjct: 61 LSETREIVEAGGEDAELFRPELPGLQEAYAQAE---AALKDALIPRDPDDARDAIVEVKA 117 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI--------SGR 170 G GG E+ALF GDL RMYERYA W+ ++LSS + GG+K++ + Sbjct: 118 GEGGEESALFAGDLLRMYERYAERMGWQTQILSSVPTELGGFKDVQLAVRLRSAPEDPAD 177 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRA 229 GV++ +KFE+GVHRVQRVP TE+ GR+HTSAA V V +V+I DIR+D R+ Sbjct: 178 GVWAHLKFEAGVHRVQRVPVTESQGRLHTSAAGVLVFAEVDDPGEVEIADADIRVDVFRS 237 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQ VNTTDSAVRITHIPTG++V EKSQ +NR AM+VLRARL ++ ++ A E Sbjct: 238 SGPGGQSVNTTDSAVRITHIPTGLVVSCQDEKSQIKNREAAMRVLRARLRQMQLEQQAEE 297 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +A R+ Q+ + DRSERIRTYNF + RI+DHR Y L+ VL G + +++ + Sbjct: 298 NAAMRRSQVRTVDRSERIRTYNFPENRISDHRTGYKAYNLDQVLAGNLGPLVDSAREMDE 357 Query: 349 AKMIGSAS 356 A+ + S Sbjct: 358 AERMASQE 365 >gi|302521935|ref|ZP_07274277.1| peptide chain release factor 1 [Streptomyces sp. SPB78] gi|318060718|ref|ZP_07979441.1| peptide chain release factor 1 [Streptomyces sp. SA3_actG] gi|318075509|ref|ZP_07982841.1| peptide chain release factor 1 [Streptomyces sp. SA3_actF] gi|333024405|ref|ZP_08452469.1| putative peptide chain release factor 1 [Streptomyces sp. Tu6071] gi|302430830|gb|EFL02646.1| peptide chain release factor 1 [Streptomyces sp. SPB78] gi|332744257|gb|EGJ74698.1| putative peptide chain release factor 1 [Streptomyces sp. Tu6071] Length = 357 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 214/351 (60%), Gaps = 20/351 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L AE+E ++++ +L++ YA ++PI+ + + Sbjct: 3 EAVEELIGEHAELEQKLADPSVHADQANARRLSKRYAELTPIVGTYRAWRATGDDIATAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + EV +++ EL ++ LL+P+D D+K ILEI+AG GG Sbjct: 63 ELAAEDPE-------FAAEVKELDERREELTEKLRLLLVPRDPSDEKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG---------RGVFS 174 E+ALF GDL RMY RYA WK E+L +++++ GGYK++ + +GV++ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEILDATESELGGYKDVQVAVKTKGNANPEPGQGVWA 175 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG GG Sbjct: 176 RMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E + R Sbjct: 236 QSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREAADAR 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RSQVRTVDRSEKIRTYNFPENRISDHRVGYKAYNLDQVLDGDLDAVIQACV 346 >gi|317121051|ref|YP_004101054.1| bacterial peptide chain release factor 2 (bRF-2) [Thermaerobacter marianensis DSM 12885] gi|315591031|gb|ADU50327.1| bacterial peptide chain release factor 2 (bRF-2) [Thermaerobacter marianensis DSM 12885] Length = 416 Score = 239 bits (609), Expect = 6e-61, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 176/346 (50%), Gaps = 6/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + IE M++ D + ++ + + + Y+ +++ DL + Sbjct: 24 DLAGKRREIERIEQAMTDPSFWDEPDRAQQQVRQLKVLKGPVEHYEALERQLDDLQVLAE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++++ E+ + E ++ LL D I+ + G GG+E+ Sbjct: 84 LAAEEADV--SVIPELEEGIAKAEEGLRQLELDLLLNGPYDGYDAIVSLHPGAGGTESQD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A ++VEVL + ++ G K + + G + ++ E GVHR+ R Sbjct: 142 WAQMLWRMYTRWAEDHGYQVEVLDLLEGEEAGIKSVTFAVRGPNAYGYLRSEHGVHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+GR HTS A+V VLP+ +++I ED+RID RA G GGQHVN T+SAVRI Sbjct: 202 ISPFDAAGRRHTSFASVDVLPDLGDSPEIEIRPEDLRIDVFRAGGHGGQHVNKTESAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTGI+ +E+SQH NR AMK+L+ARL ++ E +A R +G + Sbjct: 262 VHLPTGIVATCQNERSQHANRETAMKILKARLARYYEEQRLKEIAALR-GDVGEIAWGNQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F + DHR + + ++ V+ G++D IN L A+ Sbjct: 321 IRSYVFQPYTLVKDHRTGVEVGNVQAVMDGHLDPFINAYLRWEAAR 366 >gi|329939826|ref|ZP_08289127.1| peptide chain release factor 1 [Streptomyces griseoaurantiacus M045] gi|329301396|gb|EGG45291.1| peptide chain release factor 1 [Streptomyces griseoaurantiacus M045] Length = 361 Score = 238 bits (608), Expect = 6e-61, Method: Composition-based stats. Identities = 141/355 (39%), Positives = 214/355 (60%), Gaps = 24/355 (6%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ +L + YA ++PI++ + + + Sbjct: 3 EAVEELVGEHADLEKKLADPAVHADQANARRLNKRYAELTPIVATYRSWKRTGDDLGTAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +E++ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 EFAADDPD-------FVAEVKELEQQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------------ 171 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + + Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKTKPHGVSQGATEPGQ 175 Query: 172 -VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 V++R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+S Sbjct: 176 GVWARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPSDLRIDVYRSS 235 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E Sbjct: 236 GPGGQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEKEA 295 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + R+ Q+ + DRSE+IRTYN+ + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 ADARRSQVRTVDRSEKIRTYNYPENRISDHRVGFKAYNLDQVLDGDLDAVIQACV 350 >gi|325283363|ref|YP_004255904.1| Peptide chain release factor 1 [Deinococcus proteolyticus MRP] gi|324315172|gb|ADY26287.1| Peptide chain release factor 1 [Deinococcus proteolyticus MRP] Length = 377 Score = 238 bits (608), Expect = 7e-61, Method: Composition-based stats. Identities = 142/360 (39%), Positives = 221/360 (61%), Gaps = 14/360 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA----YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +L + F +E + + + Y +LT + +SP+++ Y+ QE+QD Sbjct: 5 RLSELVSEFGMVERALGDPAVLAEGGREYTRLTRRHRELSPLVTLYREYETLGQEQQDSR 64 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D E+R++AQ E+ I + E+E+E+ LLLP D D +LEIR+G GG+ Sbjct: 65 ELLA----DPELREMAQAELERISARLAEVESELEVLLLPTDPLDPNDAVLEIRSGAGGA 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL RMY RYA ++EVL S+++D GG+ ++VA ++G + +K+ESGVH Sbjct: 121 EAALFAADLLRMYSRYAESAGLRLEVLDSNESDLGGFAKVVAEVTGEFAYRTLKWESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GR+HTS TVAVLP+ + +V + L ++RID R+ G+GGQ VNTTDSA Sbjct: 181 RVQRVPATESQGRIHTSTVTVAVLPQVEQSEVQLDLSEVRIDVFRSQGAGGQSVNTTDSA 240 Query: 244 VRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 VR T+ ++V +SQ +NR +A+ +L +RL + ER++ R QIGS Sbjct: 241 VRATYRAGTPDEIMVVCQDGRSQIKNREKALMILASRLAEREREKQQASEREARSSQIGS 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 GDRSE++RTYN+ Q R+TDHR+ LE V+ G +++++ L + + + +E Sbjct: 301 GDRSEKVRTYNYPQNRVTDHRLEGETKNFPLETVIGGRLEELVGALARQQREQQLLDMAE 360 >gi|256372571|ref|YP_003110395.1| peptide chain release factor 1 [Acidimicrobium ferrooxidans DSM 10331] gi|256009155|gb|ACU54722.1| peptide chain release factor 1 [Acidimicrobium ferrooxidans DSM 10331] Length = 357 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 149/356 (41%), Positives = 212/356 (59%), Gaps = 6/356 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQ 60 +S + ++ +A + +++ + + + I+ + + + Sbjct: 1 MSEDRYERFEHEYARVLEELADPAIFQDQRRAREVARRHKELEAIVGALRRVQALEGDRD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + R+ + E+ I+ + + LLLP D +D ++ ILEIR Sbjct: 61 AARELYRGAS--PAEREELKAELDEIDAALARAREALELLLLPSDPNDGRAVILEIRGAE 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF DL MYER+A R WKVEVLS S +D GGY ++ + G + R+K E+ Sbjct: 119 GGEEANLFAKDLADMYERWADRRSWKVEVLSRSVSDLGGYDDVTLLVRGDDAWKRLKHEA 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G HRVQRVP TE GRVHTS+ATV LPEA EI+V I D+RID R++G GGQ VNTT Sbjct: 179 GPHRVQRVPVTETQGRVHTSSATVTALPEADEIEVSIDPSDLRIDVYRSTGPGGQSVNTT 238 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V EKSQ QNR +A++VLRARL +E+ + E +A RK QI S Sbjct: 239 DSAVRITHLPTGIVVAMQDEKSQIQNRAKALQVLRARLLKLEQDKRQAELTATRKAQIRS 298 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G RSE+IRTYNF + R+TDHRI LTLY+L+ +LQG +D++ + LL + + + + Sbjct: 299 GGRSEKIRTYNFKENRVTDHRIGLTLYRLDQILQGDLDELSDALLVHEREEQLAAL 354 >gi|326575346|gb|EGE25274.1| peptide chain release factor 2 [Moraxella catarrhalis CO72] Length = 349 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 172/346 (49%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I K R E+ L + + K+++E + + I+ I K + + Sbjct: 10 DIESKKERLEEVNLELENPDIWNNPDLATKISKEKSVLDGIVGVIDGLSAKLDDAAAMLE 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + +S + D+ A+ + + + D +C L+I++G+GG+E Sbjct: 70 LAVEDDDESLLSDVQAELDDALNSVEE-----LEFRRMFSGEMDANNCYLDIQSGSGGTE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+ +K EVL S+ G K + G F ++ E GVHR Sbjct: 125 AQDWAQMLLRMYLRWCESHGFKAEVLEVSEGGVAGIKSATIMVKGDYAFGWLRTEIGVHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +++ HTS A V V PE + +DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 185 LVRKSPFDSNNGRHTSFAAVFVSPEIDDNIGIDINPADLRIDTYRSSGAGGQHVNTTDSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 VRITH PTG++V +E+SQH N+ AMK+LRA+LY++E ++ ++ K IG G Sbjct: 245 VRITHQPTGVVVACQNERSQHANKDTAMKMLRAKLYELEMQKRMEKQQALEESKSDIGWG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L A Sbjct: 305 ---SQIRSYVLDDSRIKDLRTGVETSNTTAVLNGDLDKFIEASLKA 347 >gi|183602493|ref|ZP_02963858.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis HN019] gi|219683536|ref|YP_002469919.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis AD011] gi|241190567|ref|YP_002967961.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195973|ref|YP_002969528.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|254790862|sp|B8DTL4|RF1_BIFA0 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|183218134|gb|EDT88780.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis HN019] gi|219621186|gb|ACL29343.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis AD011] gi|240248959|gb|ACS45899.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250527|gb|ACS47466.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793554|gb|ADG33089.1| peptide chain release factor 1 [Bifidobacterium animalis subsp. lactis V9] Length = 365 Score = 238 bits (608), Expect = 8e-61, Method: Composition-based stats. Identities = 140/354 (39%), Positives = 201/354 (56%), Gaps = 20/354 (5%) Query: 14 NRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + IE +M E D KL A + I++ + + + + G+ Sbjct: 14 EEYENIERQMGEQEVWSNPDKMRKLGRRQAQLGTIVNAYRTWLNIRNDLDAAQEMAGEDP 73 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 E +E E+ E E ++ L+P+D DD + I+EI+AG GG EAALF G Sbjct: 74 D-------FAQEAKRLESELPEAEEKLRTALIPRDPDDARDVIMEIKAGAGGEEAALFAG 126 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W V + S + + GG K++ I GV++ +K+E GVH Sbjct: 127 DLLRMYMRYAEKRGWGVTIQSENSTELGGVKDVQMAIRAKGNPSPEEGVWASLKYEGGVH 186 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 187 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 246 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 247 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A + + + S Sbjct: 307 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEEQRLAS 360 >gi|296134253|ref|YP_003641500.1| hypothetical protein TherJR_2767 [Thermincola sp. JR] gi|296032831|gb|ADG83599.1| hypothetical protein TherJR_2767 [Thermincola potens JR] Length = 371 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 124/368 (33%), Positives = 189/368 (51%), Gaps = 25/368 (6%) Query: 1 MVFLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISP 44 M+ + + +L R E+ E + +E D ++ + I+ Sbjct: 1 MIADLKRDLIELAERLEELRVSLDIAGKVRAVNALEEKTAEQGFWDNPVEAQKVMREIND 60 Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 + I +Y+ K++ D++T+ D + ++ + I +E LLL Sbjct: 61 LKDTIGLYNTLKRQYDDVYTLWELGMEDDDPDEIEKEVARDIRHLRHNVEQAELTLLLGD 120 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D + I+ + AG GG+EA +V L RMY R+A + +K++ L D+ G K Sbjct: 121 KYDK-GNAIISLHAGAGGTEAQDWVQMLLRMYTRWAEEKGYKIDTLDLLPGDEAGIKSAS 179 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIR 223 +I G + +K E GVHR+ R+ +ASGR HTS A+V VLPE + + D+R Sbjct: 180 ISIEGPYAYGYLKSEKGVHRLVRISPFDASGRRHTSFASVDVLPEVDDETEIVIDPADLR 239 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT R+ G+GGQHVN TDSAVRITHIPTGI+V +E+SQH NRL+AMK+L+ARL D+E Sbjct: 240 IDTFRSGGAGGQHVNKTDSAVRITHIPTGIVVQCQNERSQHSNRLKAMKLLQARLLDLEI 299 Query: 283 KRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDI 339 K+ E + R Q I G +IR+Y F + DHR + ++ V+ G ID+ Sbjct: 300 KKKEEELNKLRGEQQEIAWG---SQIRSYVFHPYSLVKDHRTGVETGNVQAVMDGEIDEF 356 Query: 340 INPLLTAH 347 I L + Sbjct: 357 IAAYLKSR 364 >gi|29829454|ref|NP_824088.1| peptide chain release factor 1 [Streptomyces avermitilis MA-4680] gi|46576778|sp|Q82J70|RF1_STRAW RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|29606562|dbj|BAC70623.1| putative peptide chain release factor 1 [Streptomyces avermitilis MA-4680] Length = 358 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 148/352 (42%), Positives = 217/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVEELIGEHADLEKKLADPSVHADQANARKLNKRYAELTPIVATYRSWKQTGDDIETAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +EK+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 EFVADDPD-------FAAEVKDLEKQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEIHANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEREAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLDAMIQACV 347 >gi|312947424|gb|ADR28251.1| peptide chain release factor 2 [Escherichia coli O83:H1 str. NRG 857C] Length = 357 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 20 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 79 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 80 VEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 134 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 135 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 194 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 195 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 254 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 255 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 312 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 313 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 355 >gi|203287654|ref|YP_002222669.1| peptide chain release factor A [Borrelia recurrentis A1] gi|201084874|gb|ACH94448.1| peptide chain release factor A [Borrelia recurrentis A1] Length = 359 Score = 238 bits (607), Expect = 9e-61, Method: Composition-based stats. Identities = 158/358 (44%), Positives = 242/358 (67%), Gaps = 6/358 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M +++ ++ + +E ++ + + K+ +EY + I K Y Sbjct: 1 MKMFL-EKLNPIEKKIKILEEKLQDVNLIKNQKEYSKIIKEYNYLEKIKEKKDEYQHILN 59 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + ++ E++DL + E+ + + E+EN I LLL +D +DDK+ I+EIR Sbjct: 60 QINENQKILSEEDN-LEMKDLIKQEIAHLYSKKDEIENTIKILLLHQDENDDKNIIIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAALF +L+ MY +Y+ +KWK E+++ + + GG+KE+ I G+ VF ++K Sbjct: 119 AGTGGEEAALFAHNLYEMYTKYSEKKKWKTELINFNKTELGGFKEVSFEIKGKDVFKKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 ESGVHRVQR+P TE++G++ TSAATVAVLPE + D++I +D+R D R+SG+GGQHV Sbjct: 179 HESGVHRVQRIPITESNGKLQTSAATVAVLPEVEDTDIEINDKDLRTDVYRSSGAGGQHV 238 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+ +E+SQH+N+ +AMK+LRARLY++E + +RS +RK Q Sbjct: 239 NTTDSAVRITHLPTGIVAQCQNERSQHKNKEQAMKILRARLYELENLKKQEQRSNDRKQQ 298 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYNF Q R+TDHR N++LYKLE ++QG +D ++N L Q + + + Sbjct: 299 VGSGDRSERIRTYNFPQNRVTDHRANISLYKLEEIMQGELDSLLNTLALKFQEQSLKN 356 >gi|213964464|ref|ZP_03392664.1| peptide chain release factor 1 [Corynebacterium amycolatum SK46] gi|213952657|gb|EEB64039.1| peptide chain release factor 1 [Corynebacterium amycolatum SK46] Length = 357 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 133/356 (37%), Positives = 210/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + +E ++++ + K+ + + + P+I + + + + + Sbjct: 8 VDDILSEYHGLEAQLADPELHNDPKAARKVGKRFNELQPVIQTHKKLTEVQDDLEAAREM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + + E +E+++ +L L P+D D ++E+++G GG EA Sbjct: 68 AYEDSEFAAEAERLAAEAEELEEKLADL-------LAPRDPHDSDDIVMELKSGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF G+L RMY+RYA + E+L S++D GG K++ +I G +S KFE Sbjct: 121 ALFAGELARMYQRYAEKHGFTTEILGLSESDLGGVKDMTMSIRAKTPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E D+ I +D+R+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVEDIQIDEKDLRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTG++V E+SQ QN+ RAM+VL ARL ++ + +A S RK Q+ Sbjct: 241 TDSAVRLTHLPTGLVVTCQKERSQIQNKARAMQVLAARLQQMKEEEIAEAASDQRKSQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + R++DHRI + L+ VL G +DD++ L A +A+ + + Sbjct: 301 NMDRSERIRTYNFPENRVSDHRIGYKAHNLDSVLGGDMDDLLKALHDAERAERLEA 356 >gi|302558381|ref|ZP_07310723.1| peptide chain release factor 1 [Streptomyces griseoflavus Tu4000] gi|302475999|gb|EFL39092.1| peptide chain release factor 1 [Streptomyces griseoflavus Tu4000] Length = 358 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 144/352 (40%), Positives = 216/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ +L + YA ++PI++ + Q + + Sbjct: 3 EAVEELVAEHADLEKKLADPSVHSDQANARRLNKRYAELTPIVATYRSWKQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +EK+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKDLEKQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G + +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGDLAAVIQACV 347 >gi|289643112|ref|ZP_06475242.1| peptide chain release factor 1 [Frankia symbiont of Datisca glomerata] gi|289507076|gb|EFD28045.1| peptide chain release factor 1 [Frankia symbiont of Datisca glomerata] Length = 356 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 155/354 (43%), Positives = 215/354 (60%), Gaps = 16/354 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L AE+E R+++ L YA ++P + D+ + Sbjct: 5 LDALLTEHAELESRLADPSVHADPALARSLGRRYAELTPAVETARELDRVAADLATAREF 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + S + EV +E E L N + L+P D DD + ILEI+AG GG E+ Sbjct: 65 AAEDTS-------FRAEVAELEAEQETLRNRLRAHLVPTDPDDARDAILEIKAGAGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF GDL RMY RYA R W+ E+L ++ +D GGY+++ + GVF R++FE Sbjct: 118 ALFAGDLLRMYLRYAERRGWRTEILDANPSDLGGYRDVSVAVKAGRGASEGVFGRLRFEG 177 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE++GR+HTSAA V VLPEAA+++VDI D+RID R+SG GGQ VNTT Sbjct: 178 GVHRVQRVPVTESAGRIHTSAAGVLVLPEAADVEVDIDPNDLRIDVYRSSGPGGQSVNTT 237 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+P+G++V +EKSQ QN+ A+++LRARL V R+R E SA R Q+ + Sbjct: 238 DSAVRITHLPSGLVVSCQNEKSQLQNKESALRILRARLLSVARERAQAEASAARASQVRT 297 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 DRSER+RTYNF++ RI+DHR+ Y L+ VL G +DD++N L+ A + Sbjct: 298 VDRSERVRTYNFAENRISDHRVGYKAYNLDQVLDGELDDVLNALIAADLQTRLS 351 >gi|124024025|ref|YP_001018332.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9303] gi|123964311|gb|ABM79067.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9303] Length = 367 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 140/353 (39%), Positives = 210/353 (59%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ K F +E ++++ + E A + P++ +QE Q+ Sbjct: 11 RLETAKTSFQSLERQLADPDVAADPKLLESIARERARLEPLVLDFEALQHVEQEWQETKQ 70 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D + LAQ E+ +E L + LLP D D +S +LEIRAG GG+E Sbjct: 71 LLRESRGDEAMESLAQEELQQLEARKTVLVRRLTLALLPSDPRDQRSVMLEIRAGAGGNE 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY W V+ LS+++ D GG++E++ +I G VFS++KFE+GVHR Sbjct: 131 ACLWAGDLARMYERYGQRIGWSVQPLSATEADLGGFRELILSIKGDAVFSQLKFEAGVHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS ATVAV+PEA ++V I ++ I T R+ G+GGQ+VN ++AV Sbjct: 191 VQRVPTTESQGRVHTSTATVAVMPEADAVEVQIDPSELEISTARSGGAGGQNVNKVETAV 250 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + ++SQ QNR RAM++LRA+L + + S+ R+ Q+G+GDRS Sbjct: 251 DLLHKPTGIRVFCTQQRSQLQNRERAMEILRAKLLERQIAEANARESSTRRAQVGTGDRS 310 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R TDHR+ LE VL G ++++I + Q + S Sbjct: 311 EKIRTYNYKDNRTTDHRLGRNFS-LEPVLTGQLEELIGACIAEEQRHQLEELS 362 >gi|220934633|ref|YP_002513532.1| peptide chain release factor 2 [Thioalkalivibrio sp. HL-EbGR7] gi|219995943|gb|ACL72545.1| peptide chain release factor 2 [Thioalkalivibrio sp. HL-EbGR7] Length = 364 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 181/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + +L E + + ++ IS D+ + +DL + Sbjct: 27 DAKRERLEEVSRELEDPNVWNNPEKAQELGRERSRLEEVVLLISRMDKALGDTRDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+E + ++ E ++ +LE + + D+ + ++I+AG+GG+EA Sbjct: 87 AEE-DDAETVSAVEADLANYENDVAQLE----FRRMFSGEMDENNAYMDIQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R +K E++ S+ + G K G + ++ E+GVHR+ Sbjct: 142 DWANMLLRMYLRWGERRGFKTELMEVSEGEVAGIKSATIKFEGPYAYGWLRTETGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A V V PE + +++I D+R+DT RASG+GGQHVN T+SA+R Sbjct: 202 RKSPFDSGNRRHTSFAAVFVSPEVDDSIEIEINPADLRVDTYRASGAGGQHVNRTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+G++V +++SQH+NR AMK L+A+LY++E ++ + + K IG G Sbjct: 262 ITHMPSGVVVACQADRSQHKNRDTAMKQLKAKLYELELQKQNAAKQALEDTKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + + VL G +D I L Sbjct: 320 -SQIRSYVLDQSRIKDLRTGVEVGNTQAVLDGDLDQFIEASLK 361 >gi|296119521|ref|ZP_06838079.1| peptide chain release factor 1 [Corynebacterium ammoniagenes DSM 20306] gi|295967404|gb|EFG80671.1| peptide chain release factor 1 [Corynebacterium ammoniagenes DSM 20306] Length = 358 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 146/358 (40%), Positives = 213/358 (59%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M++ + + KL++ YA + PII + Q K++ D + Sbjct: 8 VDDIVSEYQGIEMQMADPEVASDQNQFRKLSKRYAELRPIIVVHTQLTQAKEDLSDAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + + +E + ELE ++ LL P+D D + I+EI+AG GG EA Sbjct: 68 AYEDHDFQDEAE-------RLEGVVLELEEQLADLLAPRDEHDSEDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMYERYA + EV+ +++D GG K++ T + +S KFE Sbjct: 121 ALFAADLARMYERYADKSGFSWEVIGINESDLGGVKDMTITFKSKTPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E+ +V I +D+R+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVAEVHIDEKDLRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTG++V E+SQ QN+ RAM+VL+ARL +ER+ E R Q+ Sbjct: 241 TDSAVRLTHLPTGLVVTCQRERSQIQNKARAMQVLQARLEQMEREAREAEAGEQRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYN+ + RITDHRI L+ VL G + +I+ L +A+ + S Sbjct: 301 TMDRSERIRTYNWPENRITDHRIGYKANNLDSVLDGDMGSLIDALQAQERAERMESEG 358 >gi|294631400|ref|ZP_06709960.1| peptide chain release factor 1 [Streptomyces sp. e14] gi|292834733|gb|EFF93082.1| peptide chain release factor 1 [Streptomyces sp. e14] Length = 355 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 145/349 (41%), Positives = 217/349 (62%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI++ + Q + + Sbjct: 3 EAVEELVAEHADLEKKLADPSVHADQANARKLNKRYAELTPIVATYRSWKQTGDDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV ++K+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKELDKQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRM 176 E+ALF GDL RMY RYA WK E++ +++++ GGYK++ + G+GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDATESELGGYKDVQVAVKARGQIEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++ +EKSQ QN+ +AM++LR+RL ++ E + R+ Sbjct: 236 VNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEREAADARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSE+IRTYN+ + RI+DHR+ Y L+ VL G + +I + Sbjct: 296 QVRTVDRSEKIRTYNYPENRISDHRVGFKAYNLDQVLDGDLAAVIQACV 344 >gi|167767702|ref|ZP_02439755.1| hypothetical protein CLOSS21_02237 [Clostridium sp. SS2/1] gi|167710441|gb|EDS21020.1| hypothetical protein CLOSS21_02237 [Clostridium sp. SS2/1] gi|291558928|emb|CBL37728.1| bacterial peptide chain release factor 2 (bRF-2) [butyrate-producing bacterium SSC/2] Length = 373 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 175/352 (49%), Gaps = 12/352 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + K R ++EL M E D + +E ++ ++ + K ++ + L + Sbjct: 27 LEAKKERIDQLELNMEEPGFWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDM 86 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + I + + + + L D IL + AG GG+E+ Sbjct: 87 AEEDEDADLIEEATALMDEFEKTYEE-----LRISTLLTGEYDKDDAILTLHAGAGGTES 141 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + G L+RM+ R+A + + EVL D D+ G K + I+G + ++ E GVHR+ Sbjct: 142 CDWAGMLYRMFTRWAGKKGYGTEVLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRL 201 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V+P+ + +V+I EDIRIDT RASG+GGQH+N TDSA+ Sbjct: 202 VRISPFNAAGKRQTSFASCDVMPDIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAI 261 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V +E+SQH+N+ +AMK+L+ +LY +++++ + S R +G Sbjct: 262 RITHLPTGIVVQCQNERSQHKNKDQAMKMLKTKLYLLKQQQHLEKLSDIR-GDVGDNGWG 320 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +IR+Y + DHR N VL G +D +N L Sbjct: 321 NQIRSYVLQPYTMVKDHRTNFESGNPSAVLDGDLDGFMNAYLAWDNNSKKEE 372 >gi|313201599|ref|YP_004040257.1| peptide chain release factor 1 [Methylovorus sp. MP688] gi|312440915|gb|ADQ85021.1| peptide chain release factor 1 [Methylovorus sp. MP688] Length = 347 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 180/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + KL +E + ++ ++ D ++ +L + Sbjct: 10 ETKQQRLEEVSQLLEDPSIWNDNERSQKLGKERRELEFVVKSLTEVDNSLRDSAELFEMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D+ + + ++ + + + D +C ++I++G+GG+EA Sbjct: 70 REENDDATLLGIDADSKALEKQVEEM-----EFRRMFANPMDGNNCFIDIQSGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY R +KVEVL S+ D G K ISG + ++ ESGVHR+ Sbjct: 125 DWASMLLRMYLRYCERRGFKVEVLEESEGDVAGLKSASLKISGDYAYGYLRTESGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V+V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 185 RKSPFDSGNRRHTSFASVSVFPEVDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AM +L+A+LY +E + E+ + K IG G Sbjct: 245 ITHLPTNTVVQCQNDRSQHRNKAEAMNMLKAQLYQLELNKRNQEKQALEDAKTDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I+ L Sbjct: 303 -HQIRSYVLDQSRIKDLRTNVEIGNTQGVLDGDLDPFISESLKQ 345 >gi|194365600|ref|YP_002028210.1| peptide chain release factor 2 [Stenotrophomonas maltophilia R551-3] gi|238693429|sp|B4SHV0|RF2_STRM5 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|194348404|gb|ACF51527.1| conserved hypothetical protein [Stenotrophomonas maltophilia R551-3] Length = 374 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 164/344 (47%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + L E +++ + I+ + +L + Sbjct: 28 DAKKERLEEVTRELESPDVWNNAEYAQNLGRERSSLEKTVGGIASVLDGLADATELLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + ++ + + +LE + D+ + ++I+AG GG+EA Sbjct: 88 -ESEQDEDTALAVVADLDKHQAHVEKLEFQRM----FSGEMDNAAAFVDIQAGAGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R WK E++ S D G K + G + +K E+GVHR+ Sbjct: 143 DWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVEGDYAYGWLKTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +V V PE + D+R D R+SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTDVYRSSGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT I+V + +SQHQNR AMK+L A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y Q RI D R + + VL G +D+ + L A Sbjct: 321 -SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKA 363 >gi|304414309|ref|ZP_07395677.1| peptide chain release factor 2 [Candidatus Regiella insecticola LSR1] gi|304283523|gb|EFL91919.1| peptide chain release factor 2 [Candidatus Regiella insecticola LSR1] Length = 344 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 180/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + +L +E + + I+ I +++ + L + Sbjct: 7 DVKQERLEEVSAELEQPDVWNKPEYAQQLGKERSTLEAIVLTIQQLERQLADVNGLLDLA 66 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ ++ A K + ++ + + D +C L+++AG+GG+EA Sbjct: 67 VEENDEATFNEVL-----AELKAVENNLIQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQ 121 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + ++ E++ SSD D G K I G F ++ E+GVHR+ Sbjct: 122 DWANMLLRMYLRWADAKGFQTEIIDSSDGDVAGLKSATIKIIGDYAFGWLRTETGVHRLV 181 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE + +++I D+RID RASG+GGQHVN T+SAVR Sbjct: 182 RKSPFDSGGRRHTSFSSAFVYPEIDDKVNIEINPADLRIDVYRASGAGGQHVNKTESAVR 241 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+ +++SQH+N+ +AM+ L+A+LY+ E ++ ++ + K IG G Sbjct: 242 ITHIPTNIVTQCQNDRSQHKNKDQAMQQLKAKLYEFEMQKKNADKQLQEDNKSDIGWG-- 299 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + VL G +D I L A Sbjct: 300 -SQIRSYVLDDARIKDLRTNVETRNTQAVLDGDLDKFIEASLKA 342 >gi|294790651|ref|ZP_06755809.1| peptide chain release factor 1 [Scardovia inopinata F0304] gi|294458548|gb|EFG26901.1| peptide chain release factor 1 [Scardovia inopinata F0304] Length = 365 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 140/355 (39%), Positives = 206/355 (58%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + +IE +MS+ + D KL +A ++ I++ Y + + + + Sbjct: 15 DEYHDIERQMSQPEIASNPDKIRKLGRRHAELAQIVTAYQDYKRLSDDLDAAKEFAAEDD 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 S E +E+++ E ++ L+P+D DD + I+EI+AG GG EAALF G Sbjct: 75 S-------FAAEAQRLEEKLPAAEEKLRTALIPRDPDDARDTIMEIKAGAGGEEAALFAG 127 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W E++S + + GG K+I GV++ +K+E GVH Sbjct: 128 DLLRMYTRYAEKRGWATEIMSQNMTELGGVKDIQIAFRNKGAVAPEDGVWASLKYEGGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 188 RVQRIPVTESQGRIQTSAAGVIVFPEADDDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 247 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A E + R Q+ S Sbjct: 248 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEEEAQEAADMRHSQVRSL 307 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A + + SA Sbjct: 308 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEEARLASA 362 >gi|117921735|ref|YP_870927.1| peptide chain release factor 2 [Shewanella sp. ANA-3] gi|117614067|gb|ABK49521.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella sp. ANA-3] Length = 352 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 165/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 15 DAKHERLEEVSRELESSEVWNEPERAQALGKERASLEAVVKTIDDMDAGLEDVEGLLELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + + + D C L+I++G+GG+EA Sbjct: 75 IEEEDEDTFNETTKELDYLESRLAE-----LEFRRMFSGQHDASDCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPADLRIDVYRASGAGGQHVNRTESAVR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + E+ + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNKDSAMKQLKAKLFELEMHKQNAEKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R ++ + VL G +D I L Sbjct: 308 -SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDKFIEASLK 349 >gi|171920548|ref|ZP_02695589.3| peptide chain release factor 1 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|185178800|ref|ZP_02554523.2| peptide chain release factor 1 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188024350|ref|ZP_02570606.2| peptide chain release factor 1 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188518435|ref|ZP_02556548.2| peptide chain release factor 1 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|188524208|ref|ZP_02557610.2| peptide chain release factor 1 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195867475|ref|ZP_03079479.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273256|ref|ZP_03205792.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225550782|ref|ZP_03771731.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225551438|ref|ZP_03772384.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903245|gb|EDT49534.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|184209423|gb|EDU06466.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|188018616|gb|EDU56656.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188998234|gb|EDU67331.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660120|gb|EDX53500.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660951|gb|EDX54204.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249776|gb|EDY74556.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379253|gb|EEH01618.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|225379936|gb|EEH02298.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 359 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 156/363 (42%), Positives = 225/363 (61%), Gaps = 14/363 (3%) Query: 3 FLSHKQICDLKNRFA--------EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ 54 +K++ + R A E+E S+ ++ + + I + Y Q Sbjct: 1 MEYNKKLYEAIERVAVKNKTLKQELETITSD---FKKIKEINIQLKKTTKIAEAFAKYKQ 57 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 K ++ D E+ +LAQ+++ + I +ENE+ +LLP D +DDK+ I+ Sbjct: 58 KIDAGIVAEELLN-TEKDLELVELAQMDLDDAKASIPVIENELKIMLLPTDPNDDKNVIV 116 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 E+R GG E+++FVG+LF Y Y WK++++ + N G+ I ISG V+S Sbjct: 117 EMRPAAGGDESSIFVGNLFDTYRAYTESNNWKMKIIEMTPNAV-GFSFISFMISGEEVYS 175 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 RMKFESGVHRVQRVPATE+ GRVHTS TVAVLPE E+DV I D+RIDT RASG+GG Sbjct: 176 RMKFESGVHRVQRVPATESKGRVHTSTITVAVLPEQDEVDVVINPSDLRIDTYRASGAGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN T+SAVRITHIPTG++ KSQ +NR AMK+LRA+L++ +++ E + R Sbjct: 236 QHVNRTESAVRITHIPTGVVAACQEGKSQIENRETAMKMLRAKLWEAAQEQQNAEFANLR 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 K Q+G+GDRSE+IRTYN+ Q R+TDHRI+LTL KL+ ++ G +D+II+ L+ Q ++ Sbjct: 296 KNQVGTGDRSEKIRTYNYPQNRVTDHRISLTLNKLDQIMMGELDEIIDALIADEQTNLMA 355 Query: 354 SAS 356 + Sbjct: 356 NLG 358 >gi|323342350|ref|ZP_08082582.1| peptide chain release factor RF1 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463462|gb|EFY08656.1| peptide chain release factor RF1 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 359 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 141/360 (39%), Positives = 216/360 (60%), Gaps = 6/360 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ ++ R EI M S + KL +E +++ ++ + + + Sbjct: 2 MEKTMRDRLEKIQARDEEITEMMMSSEVLSDRKMMAKLGKEQSSMQQVLHAYRQFLEAED 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ + E+++LA +E +++ ++ E+ LL+PKD D I+EIR Sbjct: 62 FFTQAQEMLA--VDEPELQELAAMESAEYSEKMVKIIEELEVLLVPKDPSDSFDAIVEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG E +F GDL+RMY RYA +K E++ + D + GGY I + G F K Sbjct: 120 GAAGGDEGNIFAGDLYRMYTRYAESLGYKYELIEAMDAEAGGYSLISFVVKGAEPFRHFK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESG HRVQRVP TE GR+HTS ATV VL + + ++DI D+ IDTMR+SG+GGQHV Sbjct: 180 FESGAHRVQRVPKTETQGRIHTSTATVLVLADVEDEEIDIDPNDLEIDTMRSSGAGGQHV 239 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRI H PTGI V +SQH N+ +AM+++RAR+Y+ ++R+ ER R+ + Sbjct: 240 NKTDSAVRIVHKPTGIAVKCQDGRSQHDNKDKAMRLVRARVYEEHQRRIQEERHGERQSK 299 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +G+G RSE+IRTYN+ Q R++DHRI LTL KL+ +++G +D+I+N LL Q +++ + Sbjct: 300 VGTGARSEKIRTYNYPQNRVSDHRIGLTLQKLDIIMEGKLDEIVNALLEQEQKEILEQGA 359 >gi|190149600|ref|YP_001968125.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307245141|ref|ZP_07527233.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249543|ref|ZP_07531530.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307255961|ref|ZP_07537758.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258552|ref|ZP_07540288.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260795|ref|ZP_07542482.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|307262921|ref|ZP_07544544.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914731|gb|ACE60983.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306853921|gb|EFM86134.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858398|gb|EFM90467.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306861075|gb|EFM93072.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867346|gb|EFM99198.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869521|gb|EFN01311.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306871739|gb|EFN03460.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 347 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 171/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E +A+ +++ I DQ ++ + L + Sbjct: 10 DAKVERLEEVNAELEQPEIWNTPEKAQALGKERSALEMVVNTIRTLDQGVEDVEGLIELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ E ++ + + D C ++++AG+GG+EA Sbjct: 70 VEAEDEDTFNEAQ-----AEANELEEKLAKLEFQRMFSGQHDAADCYVDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I+G F ++ E+G+HR+ Sbjct: 125 DWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSATVKITGEYAFGWLRTETGIHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 185 RKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIP+GI+V + +SQHQN+ + MK L+A+LY++E + E+ K IG G Sbjct: 245 ITHIPSGIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEMMKKNAEKQAMEESKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLKA 345 >gi|296112892|ref|YP_003626830.1| peptide chain release factor 2 [Moraxella catarrhalis RH4] gi|295920586|gb|ADG60937.1| peptide chain release factor 2 [Moraxella catarrhalis RH4] gi|326564445|gb|EGE14672.1| peptide chain release factor 2 [Moraxella catarrhalis 103P14B1] gi|326566640|gb|EGE16781.1| peptide chain release factor 2 [Moraxella catarrhalis 12P80B1] gi|326567583|gb|EGE17698.1| peptide chain release factor 2 [Moraxella catarrhalis BC1] gi|326569431|gb|EGE19491.1| peptide chain release factor 2 [Moraxella catarrhalis BC8] gi|326571371|gb|EGE21386.1| peptide chain release factor 2 [Moraxella catarrhalis BC7] gi|326576569|gb|EGE26476.1| peptide chain release factor 2 [Moraxella catarrhalis 101P30B1] gi|326577414|gb|EGE27298.1| peptide chain release factor 2 [Moraxella catarrhalis O35E] Length = 349 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 169/346 (48%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I K R E+ L + + K+++E + + I+ I K + + Sbjct: 10 DIESKKERLEEVNLELENPDIWNNPDLATKISKEKSVLDGIVGVIDGLSAKLDDAAAMLE 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + +S + D+ A+ + + + D +C L+I++G+GG+E Sbjct: 70 LAVEDDDESLLSDVQAELDDALNSVEE-----LEFRRMFSGEMDANNCYLDIQSGSGGTE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+ +K EVL S+ G K + G F ++ E GVHR Sbjct: 125 AQDWAQMLLRMYLRWCESHGFKAEVLEVSEGGVAGIKSATIMVKGDYAFGWLRTEIGVHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSA 243 + R +++ HTS A V V PE + D+RIDT R+SG+GGQHVNTTDSA Sbjct: 185 LVRKSPFDSNNGRHTSFAAVFVSPEIDDNIDIDINPADLRIDTYRSSGAGGQHVNTTDSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 VRITH PTG++V +E+SQH N+ AMK+LRA+LY++E ++ ++ K IG G Sbjct: 245 VRITHQPTGVVVACQNERSQHANKDTAMKMLRAKLYELEMQKRMEKQQALEESKSDIGWG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L A Sbjct: 305 ---SQIRSYVLDDSRIKDLRTGVETSNTTAVLNGDLDKFIEASLKA 347 >gi|148272337|ref|YP_001221898.1| peptide chain release factor 1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|166223547|sp|A5CQ48|RF1_CLAM3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|147830267|emb|CAN01201.1| peptide chain release factor RF-1 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 359 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 144/361 (39%), Positives = 208/361 (57%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L E++ ++ + K+ YA +S I++ + + Q + Sbjct: 3 ESVVQLLEEHEELQQQLGDPELHADASRSRKVNRRYAELSRIVAAHAEWTQLGDDLAAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D D A++ +L LL+P+D DD + I+EI+ G GG+ Sbjct: 63 ELAEE---DPAFADEIPGLEQALDAAQEKL----RRLLIPRDPDDARDVIMEIKMGEGGA 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------VFSRMK 177 E+ALF DL RMY YA R+WK EVLS + +D GGYK++ I G V++ +K Sbjct: 116 ESALFAADLLRMYLHYAESRRWKTEVLSQTQSDLGGYKDVQVAIKGTSDDPALGVWAHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA V V+PE E++ I D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVIPEVEEVEEVAIDPNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ +++ + E SA R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARVLAKQQEEIDAEASAVRRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYNF + RI DHR Y L+ V+ G +D ++ + A + + + Sbjct: 296 QIRTMDRSERIRTYNFPENRIADHRTGYKAYNLDAVMDGALDPVVESCIQADEEARLDAL 355 Query: 356 S 356 Sbjct: 356 G 356 >gi|255559292|ref|XP_002520666.1| peptide chain release factor, putative [Ricinus communis] gi|223540051|gb|EEF41628.1| peptide chain release factor, putative [Ricinus communis] Length = 370 Score = 238 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 132/354 (37%), Positives = 225/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +++++ V Y KL + A + ++S + +++ ++ Sbjct: 11 KLESAEKTWKELSVKLADPDVVSNPTEYQKLAQSVAELDQVVSVYRRFKDCEKQLEETKA 70 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +D ++ ++ +E+ ++ E++ LE ++ LLLP D D ++ +LE+RAGTGG E Sbjct: 71 LAKEEGTDEDMAEMIALEIDSLSTELKGLEEKLKVLLLPSDPLDARNIMLEVRAGTGGDE 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYE+Y WK ++S S+ + GGYK V + G V+S++K+ESGVHR Sbjct: 131 AGLWAGDLVRMYEKYCEQNSWKYAIVSCSEAEKGGYKTYVMEVKGNRVYSKLKYESGVHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E++V I +DI + T R+ G+GGQ+VN ++AV Sbjct: 191 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAV 250 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E++Q QN+ RA+++LRA+LY+++ + RKLQ+G+G R+ Sbjct: 251 DLFHKPTGIRIFCTEERTQLQNKTRALQLLRAKLYEMKVREQQESIRNQRKLQVGTGARA 310 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R+TDHR+ + ++L LQG I++ + + Q +++ +E Sbjct: 311 EKIRTYNYKDNRVTDHRLKMN-FELTSFLQGDIENAVQACASTEQKELLEELAE 363 >gi|313606725|gb|EFR83443.1| peptide chain release factor 1 [Listeria monocytogenes FSL F2-208] Length = 309 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 156/308 (50%), Positives = 220/308 (71%), Gaps = 2/308 (0%) Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 Y ++ + ++G+ D E+R++A+ E ++KE +LE + LL+PKD +DDK Sbjct: 1 EYKNVNEQINETKELLGEKLDD-EMREMAKEEFAELQKEKADLEERLKLLLVPKDPNDDK 59 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 + ILEIR GG EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G Sbjct: 60 NVILEIRGAAGGDEAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGN 119 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 FSRMK+E+G HRVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++ Sbjct: 120 DAFSRMKYENGAHRVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFAST 179 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQ VNTT SAVR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E Sbjct: 180 GAGGQSVNTTMSAVRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEY 239 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 ANRK +G+GDRSERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q Sbjct: 240 DANRKSAVGTGDRSERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQT 299 Query: 350 KMIGSASE 357 + ++ Sbjct: 300 SKLEHLND 307 >gi|115462961|ref|NP_001055080.1| Os05g0277300 [Oryza sativa Japonica Group] gi|113578631|dbj|BAF16994.1| Os05g0277300 [Oryza sativa Japonica Group] Length = 349 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 164/348 (47%), Positives = 241/348 (69%), Gaps = 3/348 (0%) Query: 12 LKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 ++ R A ++ ++++ S + Y + +E + + I K++E + L +++ + Sbjct: 1 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 60 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + R++A E+L +E ++L++++ LLPKD D++ CILE+RAGTGG EA+LF Sbjct: 61 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 120 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 D+F+MYE+Y+ WK + + ++ GYKE TISG G + ++KFESG+HRVQRVP Sbjct: 121 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 180 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQ VNTTDSAVRITH+P Sbjct: 181 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 240 Query: 251 TGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TG +V E+SQHQN+ +A+KVLRARLY++ER R+ +RS R QIGSGDRSERIRTY Sbjct: 241 TGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSKLRSEQIGSGDRSERIRTY 300 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 NF QGR+TDHR+ +T + +E V++G +D I+ LL ++ I S + Sbjct: 301 NFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMDAIASFA 348 >gi|291613970|ref|YP_003524127.1| hypothetical protein Slit_1503 [Sideroxydans lithotrophicus ES-1] gi|291584082|gb|ADE11740.1| conserved hypothetical protein [Sideroxydans lithotrophicus ES-1] Length = 367 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R AE+ + + +L E ++ ++ + Q + +L + Sbjct: 30 DSKQERLAEVNQLAEDPAIWNDAKRAQELGRERKSLEDVVLGLIRISQNLDDAAELFEMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N D + +A A ++I + + + + D +C ++I+AG GG+EA Sbjct: 90 QAENDDDSLNSIA-----ADVQDIETRVAALEFRRMFSNPADPNNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +Y + +KVEVL +D D G + + G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYCERKGFKVEVLEQTDGDVAGIRSASLKVEGEYAYGHLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +VDI D+RIDT RASG+GGQH+N TDSA+R Sbjct: 205 RKSPFDSSGGRHTSFASLFVSPEVDDSIEVDINPADLRIDTFRASGAGGQHINKTDSAIR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PTGI+V +++SQH+N+ AM +L++RLY++E ++ +E K +G G Sbjct: 265 ITHQPTGIVVQCQNDRSQHRNKAEAMSMLKSRLYELELRKRQSEADKLEASKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIEASLKQ 365 >gi|209554361|ref|YP_002284416.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|238054476|sp|B5ZAH6|RF1_UREU1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|209541862|gb|ACI60091.1| peptide chain release factor 1 [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 359 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 157/363 (43%), Positives = 226/363 (62%), Gaps = 14/363 (3%) Query: 3 FLSHKQICDLKNRFA--------EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ 54 +K++ + R A E+E S+ ++ + + I + Y Q Sbjct: 1 MEYNKKLYEAIERVAVKNKTLKQELETITSD---FKKIKEINIQLKKTTKIAEAFAKYKQ 57 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 K ++ D E+ +LAQ+++ + I +ENE+ +LLP D +DDK+ I+ Sbjct: 58 KIDAGIVAEELLN-TEKDLELVELAQMDLDDAKASIPVIENELKIMLLPTDPNDDKNVIV 116 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 E+R GG E+++FVG+LF Y Y WK++++ + N G+ I ISG V+S Sbjct: 117 EMRPAAGGDESSIFVGNLFDTYRAYTESNNWKMKIIEMTPNAV-GFSFISFMISGEEVYS 175 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 RMKFESGVHRVQRVPATE+ GRVHTS TVAVLPE E+DV I D+RIDT RASG+GG Sbjct: 176 RMKFESGVHRVQRVPATESKGRVHTSTITVAVLPEQDEVDVVINPSDLRIDTYRASGAGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN T+SAVRITHIPTG++ KSQ +NR AMK+LRA+L++ +++ E + R Sbjct: 236 QHVNRTESAVRITHIPTGVVAACQEGKSQIENRETAMKMLRAKLWEAAQEQQNAEFANLR 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 K Q+G+GDRSE+IRTYN+ Q R+TDHRI+LTL KL+ ++ G +D+II+ L+T Q ++ Sbjct: 296 KNQVGTGDRSEKIRTYNYPQNRVTDHRISLTLNKLDQIMMGELDEIIDALITDEQTNLMA 355 Query: 354 SAS 356 + Sbjct: 356 NLG 358 >gi|74316939|ref|YP_314679.1| peptide chain release factor 2 [Thiobacillus denitrificans ATCC 25259] gi|74056434|gb|AAZ96874.1| peptide chain release factor 2 [Thiobacillus denitrificans ATCC 25259] Length = 349 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + +L E ++ ++ + ++ +L + + Sbjct: 14 KKDRLEEVVRLSEAPDFWNDAARAQELGRERKSLEDVVLVLDRVTSGLKDAGELFEMARE 73 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N D V A + + + + + + D +C L+I+AG GG+EA + Sbjct: 74 ENDDD-----TLAAVQADIDGLEKDVATLEFRRMFSNPADPSNCFLDIQAGAGGTEACDW 128 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L R Y +YA + +K E+L S+ D G K I G + ++ E+GVHR+ R Sbjct: 129 ASMLLRQYLKYAERKGFKAELLEESEGDVAGIKSASIKIEGDYAYGYLRTETGVHRLVRK 188 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SG HTS A+V V PE + +V+I D+R+DT RASG+GGQH+N TDSAVRIT Sbjct: 189 SPFDSSGGRHTSFASVFVYPEVDDSIEVEINPADLRVDTYRASGAGGQHINKTDSAVRIT 248 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIP+GI+V +++SQH+NR AM +L+++LY+ E ++ E+ K +G G Sbjct: 249 HIPSGIVVQCQNDRSQHKNRAEAMSMLKSKLYEAELRKRQAEQDKLEAGKADVGWG---H 305 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 306 QIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 347 >gi|283455530|ref|YP_003360094.1| peptide chain release factor 1 [Bifidobacterium dentium Bd1] gi|283102164|gb|ADB09270.1| prfA Bacterial Peptide Chain Release Factor 1 (RF-1) [Bifidobacterium dentium Bd1] Length = 340 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 142/346 (41%), Positives = 203/346 (58%), Gaps = 20/346 (5%) Query: 23 MSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D KL +A + I+S + Y Q K + + + + +E Sbjct: 1 MAEPEVASDPDKMRKLGRRHAELGAIVSAYTAYKQTKDDLEAAKEMASEDPDFAEEAK-- 58 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 +E E+ E+E ++ L+P+D DD + I+EI+AGTGG EAALF GDL RMY RY Sbjct: 59 -----RLENELPEIEEKLRTALIPRDPDDARDTIMEIKAGTGGEEAALFAGDLLRMYMRY 113 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVHRVQRVPATE 192 A R W V + S + + GG K++ I GV++ +K+E GVHRVQR+P TE Sbjct: 114 AEKRGWAVTLQSENTTELGGVKDVQLAIRAKGTPAPEDGVWASLKYEGGVHRVQRIPVTE 173 Query: 193 ASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 + GR+ TSAA V V PE + ++DI +D++ID +SG GGQ VNTT SAVR+THIP Sbjct: 174 SQGRIQTSAAGVIVFPEADEDDDEIDIDPKDLKIDIFMSSGPGGQSVNTTYSAVRMTHIP 233 Query: 251 TGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+V+ EKSQ QNR A++VL++RL ++ + A + + R Q+ S DRSERIRTY Sbjct: 234 TGIVVSMQDEKSQIQNRASALRVLKSRLLAMKHEEEAAQAADMRHSQVRSLDRSERIRTY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 NF + RI DHR N Y L+ VL G + +I+ + A +A + + Sbjct: 294 NFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEADRLANQ 339 >gi|304396712|ref|ZP_07378592.1| peptide chain release factor 2 [Pantoea sp. aB] gi|304355508|gb|EFM19875.1| peptide chain release factor 2 [Pantoea sp. aB] Length = 351 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q ++ Q L + Sbjct: 14 DAKKERLEEVNAELEQPYVWNEPERAQALGKERSSLEAIVQTLDQMSQGLEDVQGLLELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A + E+ + + D C ++++AG+GG+EA Sbjct: 74 VEAEDEETFDEAV-----AELDVLEGKLGELEFRRMFSGEYDSADCYIDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K + +SG F ++ E+GVHR+ Sbjct: 129 DWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGIKSVTIRVSGDYAFGWLRTETGVHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSGGRRHTSFSSAFIYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 249 ITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQALEDNKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 349 >gi|71894205|ref|YP_278313.1| peptide chain release factor 1 [Mycoplasma synoviae 53] gi|119361563|sp|Q4A6L9|RF1_MYCS5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71850993|gb|AAZ43602.1| peptide chain release factor 1 [Mycoplasma synoviae 53] Length = 359 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 146/353 (41%), Positives = 219/353 (62%), Gaps = 8/353 (2%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + ++K ++ +++ +++ + Y KL++E +IS I+ + ++ + + Sbjct: 9 LLNIKEKYQDLKSQLNLPEIIADIKKYTKLSKEINSISEIVETFDEFLNLEENIKSSKEL 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D +D+E+ LA+ E+ + + ELE ++ LLLPKD +D+K I+EIR GG EA Sbjct: 69 L-DIETDAEVIMLAKEEISQAQSKQLELEEKLKVLLLPKDKNDNKDVIVEIRGAAGGDEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDL+RMY ++ K+ L S GG+ + +I G +S++KFESGVHRV Sbjct: 128 NIFAGDLYRMYTKWCQQNNMKLSTLDLSPAVSGGFTLVTFSIQGEKAYSKLKFESGVHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED-IRIDTMRASGSGGQHVNTTDSAV 244 QR+P TE GRVHTS ATV V+PE + ++ +RID R+SG+GGQ VNTTDSAV Sbjct: 188 QRIPVTETKGRVHTSTATVTVMPEIDDDIEIEIKKEDLRIDVFRSSGNGGQSVNTTDSAV 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH PTGI+V KSQ QN+ AM++L+++LYD+E ++ +E S RKL GSG RS Sbjct: 248 RITHFPTGIVVSCQEGKSQIQNKDIAMRILKSKLYDLELQKKQSEESGYRKLA-GSGARS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ Q R+TDHRI + L YV++G ++ II LL Q + I A Sbjct: 307 EKIRTYNYPQDRVTDHRIGYSTS-LNYVMEGRLNPIIEELLLEEQKEKIAQAG 358 >gi|303252568|ref|ZP_07338731.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307247319|ref|ZP_07529367.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302648536|gb|EFL78729.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306856163|gb|EFM88318.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 347 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 170/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E +A+ +++ I DQ ++ + L + Sbjct: 10 DAKVERLEEVNAELEQPEIWNTPEKAQALGKERSALEMVVNTIRTLDQGVEDVEGLIELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ E ++ + + D C ++++AG+GG+EA Sbjct: 70 VEAEDEDTFNEAQ-----AEANELEEKLAKLEFQRMFSGQHDAADCYVDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I+G F ++ E+G+HR+ Sbjct: 125 DWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSATVKITGEYAFGWLRTETGIHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 185 RKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIP+ I+V + +SQHQN+ + MK L+A+LY++E + E+ K IG G Sbjct: 245 ITHIPSDIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEMMKKNAEKQAMEESKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 303 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLKA 345 >gi|33864028|ref|NP_895588.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9313] gi|81576937|sp|Q7V518|RF1_PROMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|33635612|emb|CAE21936.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9313] Length = 365 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 141/353 (39%), Positives = 211/353 (59%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ K F +E ++++ + E A + P++ +QE Q+ Sbjct: 9 RLETAKTSFQSLERQLADPDVAADPKLLESIARERARLEPLVLDFEALQHVEQEWQETKQ 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D + LAQ E+ +E L + LLP D D +S +LEIRAG GG+E Sbjct: 69 LLRESRGDDAMESLAQEELQQLEARKTVLVRRLTLALLPSDPRDQRSVMLEIRAGAGGNE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMYERY W V+ LS+++ D GG++E++ +I G VFS++KFE+GVHR Sbjct: 129 ACLWAGDLARMYERYGQRIGWSVQPLSATEADLGGFRELILSIKGDAVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V I ++ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADAVEVQIDPSELEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + ++SQ QNR RAM++LRA+L + + S+ R+ Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQQRSQLQNRERAMEILRAKLLERQIAEANARESSTRRAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R TDHR+ LE VL G ++++I + Q + S Sbjct: 309 EKIRTYNYKDNRTTDHRLGRNFS-LEPVLTGQLEELIGACIAEEQRHQLEELS 360 >gi|309973325|gb|ADO96526.1| Peptide chain release factor 2 (RF-2) [Haemophilus influenzae R2846] Length = 365 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E ++ +++ I +Q ++ L + Sbjct: 28 DAKVERLEEVNAELEQPDVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 88 IEAEDEDTFNEAV-----AELDELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 143 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 263 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 363 >gi|319427481|gb|ADV55555.1| peptide chain release factor 2, PrfB [Shewanella putrefaciens 200] Length = 365 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 28 DAKHERLEEVTRELESSDVWNEPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + + + D +C L+I++G+GG+EA Sbjct: 88 VEEEDEDTFNETTKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + E+ + + K IG G Sbjct: 263 ITHLPTNTVVQCQNDRSQHKNKDSAMKQLKAKLFELEMHKQNAEKQAAEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R ++ + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDKFIEASLK 362 >gi|16761822|ref|NP_457439.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143309|ref|NP_806651.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56414987|ref|YP_152062.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363916|ref|YP_002143553.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|61230204|sp|P0A289|RF2_SALTY RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|61230205|sp|P0A290|RF2_SALTI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|76363351|sp|Q5PJG1|RF2_SALPA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|238690721|sp|B5BFK6|RF2_SALPK RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|25299688|pir||AG0871 peptide chain release factor 2 (RF-2) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|154276|gb|AAA72914.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16504124|emb|CAD02871.1| peptide chain release factor 2 (RF-2) [Salmonella enterica subsp. enterica serovar Typhi] gi|29138943|gb|AAO70511.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129244|gb|AAV78750.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095393|emb|CAR60952.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 365 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q + L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTLDQMTQGLDDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K EV+ S+ + G K ISG + ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|284046083|ref|YP_003396423.1| peptide chain release factor 1 [Conexibacter woesei DSM 14684] gi|283950304|gb|ADB53048.1| peptide chain release factor 1 [Conexibacter woesei DSM 14684] Length = 349 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 154/359 (42%), Positives = 217/359 (60%), Gaps = 15/359 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + + +++RF E+E +MS+ + Y + +Y + + + + +E Sbjct: 1 MIEQL-VRQVESRFQELEAQMSDPEVIGDRQRYAETGRQYRDLEEAARLAAEWRRAVDDE 59 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ + D+E+RD + + I L+ EI ++ KD D+K+ I+EIR G Sbjct: 60 AGARELLEEGGDDAEVRD----MLARARERIDALDEEIRLAMVEKDPADEKNVIVEIRPG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA LF GDL+RM RYA R +K E LS SD + + G G +S KFE Sbjct: 116 AGGDEAGLFAGDLYRMLTRYAERRGFKTEALSESD------GQYTFAVKGEGAYSVFKFE 169 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 G HRVQRVP TE+ GR+HTS ATVAVLPEA E+DV++ D+++D R+SG GGQ VNT Sbjct: 170 GGTHRVQRVPETESQGRIHTSTATVAVLPEAEEVDVEVNDNDLQVDVYRSSGPGGQSVNT 229 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH P+GI+V+ EKSQ QNR +AM+VLRARLY+ E SA R Q+G Sbjct: 230 TDSAVRITHKPSGIVVSMQDEKSQLQNRDKAMRVLRARLYEAALAEQQAELSATRLAQVG 289 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 SG+R+E+IRTYNF QGRITDHRI LT++ L+ L G +DD+ + L + + + +E Sbjct: 290 SGERAEKIRTYNFPQGRITDHRIKLTVHNLDAALAGELDDVTDALQDDEKRRRLEVQAE 348 >gi|227487967|ref|ZP_03918283.1| peptide chain release factor 1 [Corynebacterium glucuronolyticum ATCC 51867] gi|227542608|ref|ZP_03972657.1| peptide chain release factor 1 [Corynebacterium glucuronolyticum ATCC 51866] gi|227092058|gb|EEI27370.1| peptide chain release factor 1 [Corynebacterium glucuronolyticum ATCC 51867] gi|227181806|gb|EEI62778.1| peptide chain release factor 1 [Corynebacterium glucuronolyticum ATCC 51866] Length = 358 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 139/356 (39%), Positives = 213/356 (59%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + +E +M++ + K + Y+ + PI++ + +Q + + D + Sbjct: 8 VDDILAEYQGLEAQMADPEFANDPDNVRKAGKRYSQLQPIVNLNTQLEQARADLADAKEL 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + ++ + + +E ++ ELE ++ +L P+D D ++EI+AG GG EA Sbjct: 68 AYEDSAFTAEVE-------RLEPKVVELEEKLADMLAPRDPHDPDDMVMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + EVL S++D GG K++ +I + +S KFE Sbjct: 121 ALFAGELVRMYQRYAEKHGFITEVLDESESDLGGVKDMTLSIRSKNPSQDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQR+P TE++GR+ TSAA V V PE E+ V+I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRIPVTESNGRIQTSAAGVLVYPEPDEVGQVEIDEKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTGI+V E+SQ QN+ RAM+VL+ARL +E ++ E + R Q+ Sbjct: 241 TDSAVRLTHLPTGIIVTCQKERSQIQNKARAMQVLQARLQQIEEEKAEAEAAEGRHAQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RITDHRI L+ VL G +D ++ L A + + + Sbjct: 301 TMDRSERIRTYNWPENRITDHRIGYKANNLDSVLDGDMDALLMALQDADRQARLEA 356 >gi|88855314|ref|ZP_01129978.1| peptide chain release factor 1 [marine actinobacterium PHSC20C1] gi|88815221|gb|EAR25079.1| peptide chain release factor 1 [marine actinobacterium PHSC20C1] Length = 359 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 136/361 (37%), Positives = 204/361 (56%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L E+E ++++ K+ YA +S I++ + + Q + Sbjct: 3 ESVQSLLTEHGELEGQLADPELHSDPVRSKKVNRRYAELSRIVAAYNNWRQLTDDLAAAT 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + S E+ + + + + ++ +L+P+D +D + I+EI+ G GG+ Sbjct: 63 EMADEDES-------FAAEIPGLTETLDTAQEKLRRILIPRDPNDSRDVIMEIKMGEGGA 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 E+ALF GDL RMY YA +KWK E++ + +D GG K++ + GV++ +K Sbjct: 116 ESALFAGDLLRMYLHYAESKKWKTEIIEQTSSDLGGIKDVQLAVKGNSSDPAEGVWAHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA V V PE E + I D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVFPEVDEPEEVEISQNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ ++ E S RK Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARILARYQEEADAEASEYRKS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYNF + RI DHR Y L+ + G ++ +I + A + + + Sbjct: 296 QIRTMDRSERIRTYNFPENRIADHRTGYKAYNLDQAINGALEPVIQSCIMADEEARLAAV 355 Query: 356 S 356 Sbjct: 356 G 356 >gi|126173117|ref|YP_001049266.1| peptide chain release factor 2 [Shewanella baltica OS155] gi|153002001|ref|YP_001367682.1| peptide chain release factor 2 [Shewanella baltica OS185] gi|304410531|ref|ZP_07392149.1| peptide chain release factor 2 [Shewanella baltica OS183] gi|307304624|ref|ZP_07584374.1| peptide chain release factor 2 [Shewanella baltica BA175] gi|125996322|gb|ABN60397.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella baltica OS155] gi|151366619|gb|ABS09619.1| peptide chain release factor 2 [Shewanella baltica OS185] gi|304351015|gb|EFM15415.1| peptide chain release factor 2 [Shewanella baltica OS183] gi|306912026|gb|EFN42450.1| peptide chain release factor 2 [Shewanella baltica BA175] Length = 352 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + S + L +E A++ ++ I D ++ + L + Sbjct: 15 DAKNERLEEVTRELESSEVWNDPERAQALGKERASLEAVVKTIDDMDSGLEDVEGLLELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + D +C L+I++G+GG+EA Sbjct: 75 IEEEDEDTFNETSKELDYLESRLAD-----LEFRRMFSGPQDASNCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHGFSPELMEVTDGDVAGIKGATIKFTGEYAFGWLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SGR HTS +V V PE + D+RIDT RASG+GGQHVN T+SA+R Sbjct: 190 RKSPFDSSGRRHTSFCSVFVYPEIDDDITIDINPSDLRIDTYRASGAGGQHVNKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+N+ AMK L+A+L+++E + + + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNKDAAMKQLKAKLFELEMLKQNADKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVENRSTQAVLDGDLDKFIEASLK 349 >gi|48926665|gb|AAT47454.1| putative peptide chain release factor [Oryza sativa Japonica Group] Length = 350 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 164/348 (47%), Positives = 241/348 (69%), Gaps = 3/348 (0%) Query: 12 LKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 ++ R A ++ ++++ S + Y + +E + + I K++E + L +++ + Sbjct: 2 IEQRSAYLQEQINQPDASPEEYSRANKELHKLESTMDMIEELRSKQEEIEGLKSLMTNSV 61 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + R++A E+L +E ++L++++ LLPKD D++ CILE+RAGTGG EA+LF Sbjct: 62 EEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKDEADERDCILEVRAGTGGEEASLFAM 121 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 D+F+MYE+Y+ WK + + ++ GYKE TISG G + ++KFESG+HRVQRVP Sbjct: 122 DIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASGTISGPGAYGKLKFESGIHRVQRVPV 181 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TE SGRVHTSA +VA+LP+A E+DV + ED+RIDT R+ GSGGQ VNTTDSAVRITH+P Sbjct: 182 TEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNTTDSAVRITHVP 241 Query: 251 TGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TG +V E+SQHQN+ +A+KVLRARLY++ER R+ +RS R QIGSGDRSERIRTY Sbjct: 242 TGTVVAIQDERSQHQNKAKALKVLRARLYEIERHRLHMDRSKLRSEQIGSGDRSERIRTY 301 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 NF QGR+TDHR+ +T + +E V++G +D I+ LL ++ I S + Sbjct: 302 NFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDALLLRYEMDAIASFA 349 >gi|217970376|ref|YP_002355610.1| peptide chain release factor 2 [Thauera sp. MZ1T] gi|217507703|gb|ACK54714.1| conserved hypothetical protein [Thauera sp. MZ1T] Length = 367 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 186/340 (54%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 ++ E+ + + + +L +E + ++ + D + ++ +DL + + Sbjct: 34 SKLEEVNRALEDPAVWNNAERAQELGKEKRQLEDVVLTLQKIDAQSRDLKDLFELA-EAE 92 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + + +++ ++ I +LE + + + D +C +EI+AG GG+EA + G Sbjct: 93 DDDDTFEAVEADLVELQGAIEKLE----FRRMFSNPMDPNNCFIEIQAGAGGTEAQDWAG 148 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY RY + + VE++ ++ + G K SG + ++ E+G+HR+ R Sbjct: 149 MLERMYLRYGEKKGFTVELMEETEGEVAGIKNCTIKFSGEYAYGYLRTETGIHRLVRKSP 208 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS +V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRITH Sbjct: 209 FDSNARRHTSFTSVFVYPEVDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRITHE 268 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V +++SQH+N+ AM +L+ARLY+ E ++ +E+ + K IG G +I Sbjct: 269 PTGIVVQCQNDRSQHKNKAEAMSMLKARLYEAELRKRQSEQQKLEDSKSDIGWG---HQI 325 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y Q RI D R N + + VL G +DD I L Sbjct: 326 RSYVLDQSRIKDLRTNYEVGNTQAVLDGDLDDFIGASLKQ 365 >gi|290957365|ref|YP_003488547.1| peptide chain release factor 1 (RF-1) [Streptomyces scabiei 87.22] gi|260646891|emb|CBG69988.1| peptide chain release factor 1 (RF-1) [Streptomyces scabiei 87.22] Length = 358 Score = 237 bits (604), Expect = 2e-60, Method: Composition-based stats. Identities = 149/352 (42%), Positives = 214/352 (60%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E ++++ KL + YA ++PI+ + Q + Sbjct: 3 EAVEELVGEHADLEKKLADPSVHADQANARKLNKRYAELTPIVGTYRTWKQTGDDIDTAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D EV +EK+ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 EFAADDPD-------FIAEVKELEKQREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEIIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVDVEINANDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITHIPTG++ +EKSQ QN+ +AM++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHIPTGVVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEREAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNFPENRISDHRVGFKSYNLDQVLDGELDAVIQACV 347 >gi|260581088|ref|ZP_05848909.1| peptide chain release factor 2 [Haemophilus influenzae RdAW] gi|260092217|gb|EEW76159.1| peptide chain release factor 2 [Haemophilus influenzae RdAW] Length = 351 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E ++ +++ I +Q ++ L + Sbjct: 14 DAKVERLEEVNGELEQPDVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 74 IEAEDEDTFNEAV-----AELDELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 129 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 249 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 349 >gi|297517277|ref|ZP_06935663.1| peptide chain release factor 1 [Escherichia coli OP50] Length = 274 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 152/257 (59%), Positives = 201/257 (78%), Gaps = 2/257 (0%) Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 PKD DD+++ LE+RAGTGG EAALF GDLFRMY RYA R+W+VE++S+S+ + GGYKE Sbjct: 16 PKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKE 75 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLED 221 I+A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTSA TVAV+PE + + DI D Sbjct: 76 IIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPDAELPDINPAD 135 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ Sbjct: 136 LRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAA 195 Query: 281 ERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 E + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++G +D +I Sbjct: 196 EMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVMEGKLDMLI 255 Query: 341 NPLLTAHQAKMIGSASE 357 P++ HQA + + SE Sbjct: 256 EPIIQEHQADQLAALSE 272 >gi|184200614|ref|YP_001854821.1| peptide chain release factor 1 [Kocuria rhizophila DC2201] gi|238689221|sp|B2GLX4|RF1_KOCRD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|183580844|dbj|BAG29315.1| peptide chain release factor 1 [Kocuria rhizophila DC2201] Length = 369 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 139/360 (38%), Positives = 207/360 (57%), Gaps = 18/360 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + A+++ +++ KL Y+ ++ I+ ++ ++ + + Sbjct: 5 VQPLLDEHAQLQRELADPAVHADAGRARKLGRRYSELNGIVEAHRRVERLSEDLEAAREL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ + + L L+P+D DD ++ ILE++AG GG E+ Sbjct: 65 ---GSMDPELAAEVKPLEEELAVAREAL----RRKLVPRDPDDGRNVILEVKAGEGGDES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMKFE 179 ALF GDL RMY R+A K E+LSS+ + GGYK++ + G ++R K+E Sbjct: 118 ALFAGDLLRMYMRFAEQSGLKTEILSSTPTELGGYKDVQLAVKGSSSDPSEGAWARFKYE 177 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 GVHRVQRVP TE+ GRVHTSAA V V PE ++DI D++ID R+SG GGQ VN Sbjct: 178 GGVHRVQRVPVTESQGRVHTSAAGVLVFPEVDEPDEIDISQNDLKIDVYRSSGPGGQSVN 237 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTGI+V+ +EKSQ QNR AM+VLRARL +++++ E +A RK Q+ Sbjct: 238 TTDSAVRITHVPTGIVVSMQNEKSQLQNREAAMRVLRARLLAHQQEQIDAENAAARKSQV 297 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF + RI DHR Y L++VL G ++ +I + + + + Sbjct: 298 RTVDRSERIRTYNFPENRIADHRTGYKAYNLDHVLDGALEPVIASAVELDEKARLEQLGQ 357 >gi|90020863|ref|YP_526690.1| peptide chain release factor 2 [Saccharophagus degradans 2-40] gi|89950463|gb|ABD80478.1| bacterial peptide chain release factor 2 (bRF-2) [Saccharophagus degradans 2-40] Length = 347 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + K R AE+EL ++E D L E +++ ++ I + + ++L + Sbjct: 10 AEKKERLAEVELELAEPDVWDDPARAQALGSERSSLELVVETIETLENGVADCRELLEMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + + D + L+I+AG+GG+EA Sbjct: 70 IEESDEDSFLEI-----CSEADRLEAHLATLEFRRMFSGEMDPNNAYLDIQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +K + +S D G K G F ++ E+GVHR+ Sbjct: 125 DWAEMLLRMYLRWGEDKGFKTTLEEASAGDVAGIKSATIRFEGEYAFGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS ++V V PE + D++I D+R DT RASG+GGQHVN TDSAVR Sbjct: 185 RKSPFDSGNRRHTSFSSVFVSPEIDDNIDIEINKADVREDTYRASGAGGQHVNKTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH PTGI+V SE+SQH NR +A K+LRAR+Y+ E ++ E+ + K IG G Sbjct: 245 LTHAPTGIVVQCQSERSQHSNRDKAWKMLRARVYEQEMQKRNAEKQALEDSKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ VL G +DD I L A Sbjct: 303 -SQIRSYVLDDQRIKDLRTNVQTSNCNAVLDGKLDDFIVASLKA 345 >gi|293363656|ref|ZP_06610406.1| peptide chain release factor 1 [Mycoplasma alligatoris A21JP2] gi|292552763|gb|EFF41523.1| peptide chain release factor 1 [Mycoplasma alligatoris A21JP2] Length = 354 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 149/355 (41%), Positives = 230/355 (64%), Gaps = 9/355 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K + +K+++ E++ ++ + Y KL +E +I I+ + Y ++ ++ Sbjct: 3 KSLLSIKSKYEEMQQNLANPDVISDIKKYTKLNKELNSIEEIVVSFNKYLNAEENLKNAK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + DSE+ +LA+IE+ E+ + +L E+ L+LPKD +D K+ I+EIR GG Sbjct: 63 EMLAEK--DSELVELAKIEISENEEIMTKLGAELKILILPKDENDSKNVIVEIRGAAGGD 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +F GDLFRMY++++ +++VL + + GG+ I T++G +S++KFESGVH Sbjct: 121 EANIFAGDLFRMYQKWSDQNDMRLKVLDETRAEAGGFTLITFTVTGEKPYSKLKFESGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQR+P TE GRVHTS ATV V+PE + ++++ EDIR+D R+SG+GGQ VNTTDS Sbjct: 181 RVQRIPVTETKGRVHTSTATVTVMPEIDDDIEIEVKPEDIRVDVFRSSGNGGQSVNTTDS 240 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH TGI+V KSQ QN+ AM++L+++LYD+E K+ E S RKL G G Sbjct: 241 AVRLTHNATGIVVSCQEGKSQIQNKEIAMRILKSKLYDLELKKKQEEESGYRKLA-GLGF 299 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RSE+IRTYN+ Q R+TDHRI+ + L V++G ++ II+ LLTA Q + + A Sbjct: 300 RSEKIRTYNYPQDRVTDHRISYSTS-LSPVMEGKVNSIIDSLLTAEQDEKLKEAG 353 >gi|224130870|ref|XP_002320945.1| predicted protein [Populus trichocarpa] gi|222861718|gb|EEE99260.1| predicted protein [Populus trichocarpa] Length = 358 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 163/355 (45%), Positives = 237/355 (66%), Gaps = 3/355 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +++R A +E M++ S + + +E + + I+ K++E L Sbjct: 1 MEQRLSAIEHRSACLENFMNQPEASPTEFSRANKELRKLRGSMELITYLRTKQKEIDGLR 60 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +++ + D ++ D+A E+ +E + L+N + LLP+D D++ CILE+RAG+GG Sbjct: 61 SLMTECPEDKDMLDMANEELSQAMEEEKRLQNLLLKSLLPRDDADERDCILEVRAGSGGE 120 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF D+F+MYER++ WK EV+ +++D GYKE A ISG VF ++KFESG+H Sbjct: 121 EASLFAMDIFKMYERFSQNNGWKFEVVYITESDLKGYKEASAAISGADVFGKLKFESGIH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE GRVHTSA +VA+LP+A E+D+ + ED+RIDT R+ GSGGQH NTT+SA Sbjct: 181 RVQRVPVTEKLGRVHTSAVSVAILPQADEVDLQLRNEDLRIDTYRSGGSGGQHANTTNSA 240 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI V+ E+SQH N+ +A+KVL A+LY++ER R+ RS R QIGSGDR Sbjct: 241 VRITHLPTGITVSIQDERSQHMNKSKALKVLCAKLYEMERSRLHMSRSRLRSEQIGSGDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SERIRTYNF QGR+TDHR+ +T + + V+QG +D I+ LL + I S Sbjct: 301 SERIRTYNFPQGRVTDHRVGITHHSINDVMQGESLDVFIDALLLQQEMDAIASFG 355 >gi|159904190|ref|YP_001551534.1| peptide chain release factor 1 [Prochlorococcus marinus str. MIT 9211] gi|238687119|sp|A9BCL8|RF1_PROM4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|159889366|gb|ABX09580.1| peptide chain release factor RF-1 [Prochlorococcus marinus str. MIT 9211] Length = 365 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 224/354 (63%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ F +EL++++ +L E A + P++ + ++E ++ Sbjct: 9 RLETARSSFQNLELQLADPDVASDPKRLETIARERARLEPLVLDYEKLLEIEEELLEVKD 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 V+ + SD ++ +LAQ E+ +E L N++ LLPKD D++S +LEIRAG GG E Sbjct: 69 VLRESKSDKDLEELAQDEMRKLELFKTNLINQLTLALLPKDPRDERSVMLEIRAGAGGDE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMYERY W V +SS+D D GG++E++ ++ G VFS++KFE+GVHR Sbjct: 129 ACIWAGDLARMYERYGQKIGWSVRPISSTDADLGGFRELIISVKGDSVFSQLKFEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVAV+PEA ++V + D+ I T R+ G+GGQ+VN ++AV Sbjct: 189 VQRVPATESQGRVHTSTATVAVMPEADPVEVQLDPGDLEISTARSGGAGGQNVNKVETAV 248 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RAM++LRA+L ++E + + R Q+G+GDRS Sbjct: 249 DLLHKPTGIRVFCTQERSQLQNRERAMEILRAKLLEMEIAEANAKERSARLAQVGTGDRS 308 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R TDHR+ + + LE VL+G +D++I + Q MI E Sbjct: 309 EKIRTYNYKDNRTTDHRLGIN-FPLENVLEGELDNLIGACIAEEQRLMIEELGE 361 >gi|56459931|ref|YP_155212.1| protein chain release factor B, RF-2 [Idiomarina loihiensis L2TR] gi|56178941|gb|AAV81663.1| Protein chain release factor B, RF-2 [Idiomarina loihiensis L2TR] Length = 351 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 112/343 (32%), Positives = 172/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ M + D L +E AA+ ++ + Q + + L + Sbjct: 14 DAKLERLEEVTREMEQPNVWDDPPKAQALGKERAALEQVVQTLDKLQQGLDDVEGLVDLA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + A E+ + K++ LE + + +D C L+I++G+GG+EA Sbjct: 74 VEAE-DEDTFNEAHEELSGLVKQLEALE----FRRMFSKDNDSADCYLDIQSGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +K E+ S+ D G K + G + ++ E+GVHR+ Sbjct: 129 DWANMLLRMYLRWAEAHDFKAEITELSEGDVAGIKSATVRVVGEYAYGWLRTETGVHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + D+R+DT RASG+GGQHVN TDSAVR Sbjct: 189 RKSPFDSGNRRHTSFASVFVYPEVDDDIDIEIDPSDLRVDTYRASGAGGQHVNRTDSAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH PTGI+V S++SQH+NR AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 249 LTHEPTGIVVQCQSDRSQHKNRDSAMKQLKAKLYEFELQKQNEEKQALEDSKADIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 307 -SQIRSYVLDDARIKDLRTGIENRNTQAVLDGALDPFIEASLK 348 >gi|308235424|ref|ZP_07666161.1| peptide chain release factor 1 [Gardnerella vaginalis ATCC 14018] gi|311114831|ref|YP_003986052.1| peptide chain release factor RF1 [Gardnerella vaginalis ATCC 14019] gi|310946325|gb|ADP39029.1| peptide chain release factor RF1 [Gardnerella vaginalis ATCC 14019] Length = 365 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 143/355 (40%), Positives = 207/355 (58%), Gaps = 20/355 (5%) Query: 14 NRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 N + +IE RM E DA KL +A + I+S Y Q ++ + + + + Sbjct: 17 NEYRDIENRMGEPEVASNPDAIRKLGRRHAELGSIVSAYLNYKQLCEDYEVANEMASEDE 76 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ + ++ A + ++ L+P+D DD + I+EI+AGTGG EAALF G Sbjct: 77 DLAKEAKQLEEQIPAAK-------EKLRTALIPRDPDDARDMIMEIKAGTGGEEAALFAG 129 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W + S + + GG K++ I GV++ MK+E GVH Sbjct: 130 DLLRMYMRYAEKRGWTTVIQSENSTELGGVKDVQLAIRAKGTPAPEDGVWASMKYEGGVH 189 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + +++I +D++ID +SG GGQ VNTT Sbjct: 190 RVQRIPVTESQGRIQTSAAGVIVFPEADEDDDEIEIDPKDLKIDIFMSSGPGGQSVNTTY 249 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S Sbjct: 250 SAVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSL 309 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A +A + A Sbjct: 310 DRSERIRTYNFPENRIVDHRTNYKAYNLDQVLNGDLQPVIDSDIQADEADRLAKA 364 >gi|317049377|ref|YP_004117025.1| hypothetical protein Pat9b_3172 [Pantoea sp. At-9b] gi|316950994|gb|ADU70469.1| hypothetical protein Pat9b_3172 [Pantoea sp. At-9b] Length = 365 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q ++ Q L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEIIVGTLDQMYQGLEDVQGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + E+ + + D C ++++AG+GG+EA Sbjct: 88 VEADDEETFNET-----IAELDGLETKLGELEFRRMFSGEYDSADCYIDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K +SG F ++ E+GVHR+ Sbjct: 143 DWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGLKSATIRVSGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ + PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITHIPTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ + + K IG G Sbjct: 263 ITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAAEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 363 >gi|254521606|ref|ZP_05133661.1| peptide chain release factor 1 [Stenotrophomonas sp. SKA14] gi|219719197|gb|EED37722.1| peptide chain release factor 1 [Stenotrophomonas sp. SKA14] Length = 360 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 164/337 (48%), Positives = 231/337 (68%), Gaps = 10/337 (2%) Query: 26 SPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 V + L+ E+A + P+ + ++ + K + + D ++R+LA E Sbjct: 26 PDVVADNTRFRDLSREFAQLEPVAAALADEARAKADLAAAEGMRA----DPDLRELADEE 81 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + A + +++LE E+ LL+P+D D+ + LE+RAGTGG EAA+F GDLFRMY RYA Sbjct: 82 IGAAQTRLQQLEQELALLLVPRDPRDEGNLFLEVRAGTGGDEAAIFAGDLFRMYARYAER 141 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WKVE+ S + + GGYKE+VA + GRG FSR+KFESG HRVQRVPATE+ GR+HTSAA Sbjct: 142 QGWKVEIESDNPGEHGGYKEVVARVVGRGAFSRLKFESGTHRVQRVPATESQGRIHTSAA 201 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 TVA++PE E+D + D+++DT R+SG+GGQHVN T+SA+RITH+PTG++V +E+ Sbjct: 202 TVAIIPETDEVDDIVINPADLKVDTFRSSGAGGQHVNKTESAIRITHVPTGVVVECQTER 261 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQH NR +AMK L+A+L D ER+R ++ +R+LQ+GSGDRS+RIRTYNF QGRITDHR Sbjct: 262 SQHANRDKAMKRLKAQLLDAERQRQDAAQAESRRLQVGSGDRSQRIRTYNFPQGRITDHR 321 Query: 321 I-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + LTLY L +L G +D ++ L HQ + S Sbjct: 322 VEGLTLYDLPNILAGDLDPLLQRLSHEHQVDALAQLS 358 >gi|206578228|ref|YP_002236652.1| peptide chain release factor 2 [Klebsiella pneumoniae 342] gi|288933629|ref|YP_003437688.1| hypothetical protein Kvar_0746 [Klebsiella variicola At-22] gi|238054482|sp|B5XUF3|RF2_KLEP3 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|206567286|gb|ACI09062.1| peptide chain release factor 2 [Klebsiella pneumoniae 342] gi|288888358|gb|ADC56676.1| hypothetical protein Kvar_0746 [Klebsiella variicola At-22] Length = 365 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTLDQMSQGLEDVAGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEAEDEETFNEAV-----AELDGLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + I G + ++ E+GVHR+ Sbjct: 143 DWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKIIGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|71065379|ref|YP_264106.1| peptide chain release factor 2 [Psychrobacter arcticus 273-4] gi|71038364|gb|AAZ18672.1| bacterial peptide chain release factor 2 (bRF-2) [Psychrobacter arcticus 273-4] Length = 349 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ L + + K+ +E + + +I + + ++ + + Sbjct: 12 DGKQERLEEVNLELENPELWNDPERATKINKEKSQLDGVIDVVVSLETTLEDASAMLELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + +S + D+ A + ++ + + D +C L+I++G+GG+EA Sbjct: 72 VEEEDESLLADVQ-----AELDNAEKRVADLEFRRMFSGEMDPNNCYLDIQSGSGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +KV+V+ S G K I G F ++ E GVHR+ Sbjct: 127 DWAEMLLRMYTRWAEAHGFKVDVIEVSAGGVAGIKSATIEIKGDYAFGWLRTEIGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS A V V PE + ++D+ D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 187 RKSPFDSNNGRHTSFAAVFVSPEIDDNIEIDVNPADLRIDTYRSSGAGGQHVNTTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH P+G++V +E+SQH N+ AMK+LRA+LY++E ++ + A K +G G Sbjct: 247 ITHEPSGVVVTCQNERSQHGNKATAMKMLRAKLYELEMQKRMESQQAVEDGKSDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 305 -SQIRSYVLDDSRIKDLRTGVETFNTGAVLDGDLDQFIEASLKA 347 >gi|260582141|ref|ZP_05849935.1| peptide chain release factor 2 [Haemophilus influenzae NT127] gi|260094773|gb|EEW78667.1| peptide chain release factor 2 [Haemophilus influenzae NT127] Length = 351 Score = 237 bits (603), Expect = 3e-60, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + D L +E ++ +++ I +Q ++ L + Sbjct: 14 DAKVERLEEVNAELEQPDVWNAPDKAQTLGKERVSLEQVVNTIKNLEQGLEDVDGLLELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 74 IEAEDEDTFHEAV-----AELDELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 129 DWTEMLLRMYLRWTESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 249 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 349 >gi|145352937|ref|XP_001420790.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581025|gb|ABO99083.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 343 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 134/338 (39%), Positives = 207/338 (61%), Gaps = 5/338 (1%) Query: 23 MSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + KL++ ++ ++ + + Y + +E + + D D E+ +A Sbjct: 1 MADPSVTGDPKEFQKLSKALGELTSVVEQYARYKECMKEISEARAMAKDAAGDDEMVAMA 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ A+ E L + LLPKD D+K+ +LEIRAGTGG EA ++ GDL+RMY R+ Sbjct: 61 KEEIDALTTESDALVETMTLALLPKDPLDEKNIMLEIRAGTGGDEAGIWAGDLYRMYMRF 120 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A W+ V++++ D GGYKEIV I G V+S +K+E+GVHRVQRVPATE GR+ T Sbjct: 121 AEREGWQTSVVTNNPADAGGYKEIVVEIKGDDVYSSLKWEAGVHRVQRVPATETQGRIQT 180 Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSS 258 S ATVAV+PE E++V I D+ I T R+ G+GGQ+VN ++A+ + H PTGI + + Sbjct: 181 STATVAVMPEVDEVEVKIDDNDLDISTARSGGAGGQNVNKVETAIDLMHKPTGIRVFCTE 240 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITD 318 E++Q +NR+RAM++LRA+L++++ + S RK Q+GSG RSE+IRTYN+ R++D Sbjct: 241 ERTQMKNRIRAMQILRAKLFELQLEEQRKAVSDKRKSQVGSGSRSEKIRTYNWKDSRVSD 300 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 HRI L+ L G I I + Q + + + Sbjct: 301 HRIGANFS-LQNFLDGDIKGAIGGMQALEQEEKLAELN 337 >gi|294786650|ref|ZP_06751904.1| peptide chain release factor 1 [Parascardovia denticolens F0305] gi|315226253|ref|ZP_07868041.1| peptide chain release factor RF1 [Parascardovia denticolens DSM 10105] gi|294485483|gb|EFG33117.1| peptide chain release factor 1 [Parascardovia denticolens F0305] gi|315120385|gb|EFT83517.1| peptide chain release factor RF1 [Parascardovia denticolens DSM 10105] Length = 366 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 141/356 (39%), Positives = 204/356 (57%), Gaps = 20/356 (5%) Query: 14 NRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + EIE +MS+ D KL +A + I+S Y Q + + + + Sbjct: 15 DEYHEIERQMSQPEVASDPDKIRKLGRRHAELGQIVSAYESYRQIRDDLEAAQEFASEDE 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 S E +E ++ E ++ L+P+D DD + I+EI+AG GG EAALF G Sbjct: 75 S-------FAQEAQRLEADLPEAAEKLRTALIPRDPDDARDTIMEIKAGAGGEEAALFAG 127 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVH 183 DL RMY RYA R W E++S + + GG K+I GV++ +K+E GVH Sbjct: 128 DLLRMYTRYAEKRSWSTEIMSQNMTELGGVKDIQIAFRSKGVVAPADGVWASLKYEGGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 RVQR+P TE+ GR+ TSAA V V PE + ++++ +D++ID +SG GGQ VNTT Sbjct: 188 RVQRIPVTESQGRIQTSAAGVIVFPEADDDDDEIEVDPKDLKIDIFMSSGPGGQSVNTTY 247 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ + A E + R Q+ S Sbjct: 248 SAVRMTHIPTGIVVSMQDEKSQIQNRQAALRVLKSRLLAMKHEEEAQEAADMRHSQVRSL 307 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 DRSERIRTYNF + RI DHR N Y L+ VL G + +I+ + A + + S + Sbjct: 308 DRSERIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIKADEEARLASQN 363 >gi|239982315|ref|ZP_04704839.1| peptide chain release factor 1 [Streptomyces albus J1074] gi|291454159|ref|ZP_06593549.1| peptide chain release factor 1 [Streptomyces albus J1074] gi|291357108|gb|EFE84010.1| peptide chain release factor 1 [Streptomyces albus J1074] Length = 358 Score = 236 bits (602), Expect = 3e-60, Method: Composition-based stats. Identities = 148/352 (42%), Positives = 215/352 (61%), Gaps = 21/352 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A+IE R+++ KL + YA ++PI+ + Q ++ + Sbjct: 3 EAVEELIGEHADIEKRLADPAVHADQAGARKLNKRYAELTPIVGTYRSWKQTGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKELEAAREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG----------RGVF 173 E+ALF GDL RMY RYA WK E++ S++++ GGYK++ + +GV+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTELIDSTESELGGYKDVQVAVKTKGGQGATEPGQGVW 175 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +R+K+E GVHRVQRVPATE+ GR+HTSAA V V PEA EIDV+I D+RID R+SG G Sbjct: 176 ARLKYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEIDVEINQNDLRIDVYRSSGPG 235 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E + Sbjct: 236 GQSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREAADA 295 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+ Q+ + DRSE+IRTYN+ + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RRSQVRTVDRSEKIRTYNYPENRISDHRVGFKAYNLDQVLDGELDAVIQACV 347 >gi|301156116|emb|CBW15587.1| peptide chain release factor RF-2 [Haemophilus parainfluenzae T3T1] Length = 347 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + K L +E ++ ++ I +Q ++ + L + Sbjct: 10 DAKVERLEEVNAELEQPDVWNEPEKAQALGKERVSLEQVVDTIKNLEQGLEDVEGLLELA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 70 VEAEDEETFNEAV-----AELDELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 125 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIRVSGEYAFGWLRTETGIHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 185 RKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 245 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 303 -SQIRSYVLDDARIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 345 >gi|152979178|ref|YP_001344807.1| peptide chain release factor 2 [Actinobacillus succinogenes 130Z] gi|150840901|gb|ABR74872.1| peptide chain release factor 2 [Actinobacillus succinogenes 130Z] Length = 335 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 172/340 (50%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ + + + K L +E +++ ++ I DQ ++ L + + Sbjct: 2 ERLEEVNAELEQPDVWNEPEKAQALGKERSSLEAVVDTIKKLDQGLEDVDGLLELAVEGE 61 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + A E+ + ++ + + D C ++++AG+GG+EA + Sbjct: 62 DQETFDEAV-----AELDELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTE 116 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ R Sbjct: 117 MLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATVKVSGEYAFGWLRTETGIHRLVRKSP 176 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A V PE + D+RID RASG+GGQHVN T+SAVRITHI Sbjct: 177 FDSNNRRHTSFAAAFVYPEIDDDIDIDINPADLRIDVYRASGAGGQHVNRTESAVRITHI 236 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 P+GI+V +++SQH+N+ + MK L+A+LY++E ++ ++ + K IG G +I Sbjct: 237 PSGIVVQCQNDRSQHKNKDQCMKQLKAKLYEMELQKKNADKQALEDSKSDIGWG---SQI 293 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G +D I L A Sbjct: 294 RSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 333 >gi|319948468|ref|ZP_08022604.1| peptide chain release factor 1 [Dietzia cinnamea P4] gi|319437888|gb|EFV92872.1| peptide chain release factor 1 [Dietzia cinnamea P4] Length = 361 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 144/357 (40%), Positives = 208/357 (58%), Gaps = 17/357 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ + + +E ++S+ + ++ + +A ++PI+ + + + Sbjct: 12 IDDVLSEYGGLEAQLSDPTLHEDAAAARRVGKRFAELTPIVQCHRALVSTRDDAAAAREL 71 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 GD S +E D ++ E ELE + LL P+D D ++EI++G GG E+ Sbjct: 72 AGDDPSFAEEAD-------RLDAEAAELEARLADLLAPRDPHDADDVVMEIKSGEGGEES 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMY RYA W VEVL +++D GGYK+ +I R V+SR+KFE Sbjct: 125 ALFAADLARMYTRYAEKHGWIVEVLGVTESDLGGYKDASFSIRSRQPSRDGVWSRLKFEG 184 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE ++ V+I D+RID R+SG GGQ VNT Sbjct: 185 GVHRVQRVPVTESQGRVHTSAAGVLVFPEPEDVGPVEIDESDLRIDVYRSSGKGGQGVNT 244 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG +V +E+SQ QN+ RA++VL ARL + E + R Q+ Sbjct: 245 TDSAVRITHLPTGTVVTCQNERSQLQNKQRALQVLAARLQAAAEEAAGAEAAEGRASQVR 304 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + DRSERIRTYN+ + RI DHR+ + L+ VL G +D +++ L + + + A Sbjct: 305 TVDRSERIRTYNYPENRIADHRVGFKAHNLDAVLDGDLDAVLDALAAEERRRRMEQA 361 >gi|170781877|ref|YP_001710209.1| peptide chain release factor 1 [Clavibacter michiganensis subsp. sepedonicus] gi|189039963|sp|B0RAQ5|RF1_CLAMS RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169156445|emb|CAQ01593.1| peptide chain release factor 1 (RF-1) [Clavibacter michiganensis subsp. sepedonicus] Length = 359 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 138/361 (38%), Positives = 204/361 (56%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + L E++ ++ + K+ YA +S I++ + + Q + Sbjct: 3 ESVVQLLEEHEELQQQLGDPELHADASRSRKVNRRYAELSRIVAAHAEWTQLGDDLAAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D D +++ +L LL+P+D DD + I+EI+ G GG+ Sbjct: 63 ELAEE---DPAFVDEIPGLEEQLDQAQEKL----RRLLIPRDPDDARDVIMEIKMGEGGA 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------VFSRMK 177 E+ALF DL RMY YA R+WK EVLS + +D GGYK++ I G V++ +K Sbjct: 116 ESALFAADLLRMYLHYAESRRWKTEVLSQTQSDLGGYKDVQVAIKGTSDDPALGVWAHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA + + +V + D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVIPEVEEVEEVPLDPNDLKIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +EKSQ QNR M+VLRAR+ +++ + E SA R+ Sbjct: 236 VNTTDSAVRITHLPTGIVVAMQNEKSQLQNREAGMRVLRARVLAKQQEEIDAEASAVRRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + DRSERIRTYNF + RI DHR Y L+ V+ G +D ++ + A + + + Sbjct: 296 QIRTMDRSERIRTYNFPENRIADHRTGYKAYNLDAVMDGALDPVVESCIQADEEARLDAL 355 Query: 356 S 356 Sbjct: 356 G 356 >gi|311743960|ref|ZP_07717766.1| peptide chain release factor RF1 [Aeromicrobium marinum DSM 15272] gi|311313090|gb|EFQ83001.1| peptide chain release factor RF1 [Aeromicrobium marinum DSM 15272] Length = 353 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 146/359 (40%), Positives = 211/359 (58%), Gaps = 23/359 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L AE+E +M++ ++ + YA ++ +I + Q + Q + Sbjct: 5 VETLVAEHAELERKMADPSVHADPVQAKRIGQRYAELTAVIRTYREWQQTGDDLQAAREL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + V+ +E + EL + LL+P+D D K ILEI+ G GG E+ Sbjct: 65 RMDDD------------VVQLEARLPELGERLQRLLVPRDPGDAKDVILEIKGGEGGEES 112 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF-------SRMKF 178 ALF DL RMY R+A R W+V++L S+++ GGYK + A + R + +KF Sbjct: 113 ALFAADLLRMYTRFAERRGWRVDILDSTESALGGYKSVTAAVKARSTPEPGEAPGALLKF 172 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHRVQRVP TE+ GR+HTSAA V VLPEA ++DV+I D+RID R+SG GGQ VN Sbjct: 173 EGGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEDVDVEIHDSDLRIDVYRSSGPGGQSVN 232 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTG++ +EKSQ QN+ +A+++LRARL + + E S R+ QI Sbjct: 233 TTDSAVRITHVPTGVVASCQNEKSQLQNKEQALRILRARLLEAAQATADAEASDARRSQI 292 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSER+RTYNF + RI+DHR Y L+ V+ G ++D+I L+ A A + + Sbjct: 293 RTVDRSERVRTYNFPENRISDHRTGFKAYNLDAVMDGGLEDVIGSLVEADLADRLAAVE 351 >gi|117927849|ref|YP_872400.1| peptide chain release factor 1 [Acidothermus cellulolyticus 11B] gi|166223522|sp|A0LSK4|RF1_ACIC1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|117648312|gb|ABK52414.1| bacterial peptide chain release factor 1 (bRF-1) [Acidothermus cellulolyticus 11B] Length = 364 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 147/345 (42%), Positives = 205/345 (59%), Gaps = 14/345 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + ++ +A++E R+++ L YA + PI+ + D+ Sbjct: 3 EAVEEVLREYADLERRLADPAVHADPRTARTLGRRYAQLGPIVEAYRRWKALD---ADVA 59 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +D R E L LL P D +D K I++I+AG GG Sbjct: 60 AAHELAAADPAFRAEIPALEAEREAVAERL----RSLLAPADPNDGKDVIMQIKAGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS---GRGVFSRMKFES 180 E+ALF GDL RMY RYA R WK E+L ++++D GGYK++ I G +SR+KFE Sbjct: 116 ESALFAGDLLRMYLRYAERRGWKTEILDATESDLGGYKDVTVAIRADGSEGAWSRLKFEG 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GR+HTSA V V+PEA E+DV I D+RID R+SG GGQ VNTT Sbjct: 176 GVHRVQRVPVTESQGRIHTSAVGVLVMPEAEEVDVQIDPNDLRIDVFRSSGPGGQSVNTT 235 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +EKSQ QN+ A+++LR+RL + ++ + +A R+ Q+ + Sbjct: 236 DSAVRITHLPTGIVVSCQNEKSQLQNKETALRILRSRLLALAQEEAEAQAAAQRRSQVRT 295 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 DRSERIRTYNF + RI+DHR+N Y L+ VL G +D +I L+ Sbjct: 296 VDRSERIRTYNFPENRISDHRVNYKAYNLDQVLDGDLDGVIQALV 340 >gi|238060791|ref|ZP_04605500.1| peptide chain release factor 1 [Micromonospora sp. ATCC 39149] gi|237882602|gb|EEP71430.1| peptide chain release factor 1 [Micromonospora sp. ATCC 39149] Length = 362 Score = 236 bits (602), Expect = 4e-60, Method: Composition-based stats. Identities = 154/347 (44%), Positives = 209/347 (60%), Gaps = 18/347 (5%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +++ L + +AE+E R+++ +A ++ YA +SP + E + Sbjct: 1 MSSERLAALLDEYAELEKRLADPAIHADQNAARRVGRRYAELSP-------LHKAAAELE 53 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E +I + LE + LL+P+D D K I+EI+AG Sbjct: 54 QARADLAAARELAAEDPSFAAETESIAAGLPALEERLAELLIPRDPHDAKDVIVEIKAGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVF 173 GG E+ALF GDL RMY RYA R W EV+ + D+D GG K++ I GV+ Sbjct: 114 GGEESALFAGDLLRMYTRYAERRGWLTEVIDAQDSDLGGVKDVSLAIKTKGVPEGGNGVW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+E GVHRVQRVP TE+ GR+HTSAA V VLPEA ++DV + D+RID R+SG G Sbjct: 174 SRLKWEGGVHRVQRVPVTESQGRIHTSAAGVLVLPEAEDVDVSVDPNDLRIDVFRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QNR +AM++LRARL +++ S Sbjct: 234 GQSVNTTDSAVRITHVPTGIVVSCQNEKSQLQNREQAMRILRARLLAAAQEQADAAASDA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 RK Q+ + DRSERIRTYNF Q RITDHRI T Y L+ L G +D + Sbjct: 294 RKAQVRTVDRSERIRTYNFPQNRITDHRIGYTAYNLDLALAGELDGV 340 >gi|297539161|ref|YP_003674930.1| peptide chain release factor 2 [Methylotenera sp. 301] gi|297258508|gb|ADI30353.1| peptide chain release factor 2 [Methylotenera sp. 301] Length = 351 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + D K L +E A+ ++ + + + ++L + Sbjct: 14 ETKSQRLEEVNGLLEDPKVWDDNKKSQALGKEKRALELVVHSLQAVESSLNDSRELFEMA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D + + ++ + + D +C +E ++G+GG+EA Sbjct: 74 REENDDDTLLSVDVDSQAVEKQVAEM-----EFRRMFSGELDSNNCFIEFQSGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY + +KVEVL SD D G K ++G + ++ E+GVHR+ Sbjct: 129 DWAAMLLRMYLRYCERKGFKVEVLEESDGDVAGIKGASIKVTGDYAYGTLRTENGVHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ + HTS A+V + PE + +DI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 189 RKSPFDSNAKRHTSFASVQIFPEVDDSIQIDINPADLRIDTYRASGAGGQHINKTDSAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PT +V +++SQH+NR AM +L+ LY++E + ++ A K IG G Sbjct: 249 ITHLPTNTVVQCQNDRSQHRNRDEAMNMLKGALYNLELNKRNADKQALEDAKTDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y QGRI D R N+ + + VL G +D I L Sbjct: 307 -HQIRSYVLDQGRIKDLRTNVEIGNTQGVLDGDLDPFIQVSLKQ 349 >gi|312884019|ref|ZP_07743736.1| peptide chain release factor RF-2 [Vibrio caribbenthicus ATCC BAA-2122] gi|309368477|gb|EFP96012.1| peptide chain release factor RF-2 [Vibrio caribbenthicus ATCC BAA-2122] Length = 332 Score = 236 bits (601), Expect = 4e-60, Method: Composition-based stats. Identities = 110/336 (32%), Positives = 183/336 (54%), Gaps = 15/336 (4%) Query: 17 AEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + + + L +E +++ ++ I +Q ++ + L + + D Sbjct: 2 EEVNAELEQPDVWNEPERAQALGKERSSLEAVVETIDQLNQGVEDVEGLLELAVEEE-DQ 60 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E D + E++ +E ++ +LE + + D C +++++G+GG+EA + L Sbjct: 61 ETFDEIEPELIELEFKLEKLE----FRRMFSGDHDSSDCYIDLQSGSGGTEAQDWTSMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + +K EV+ S+ + G K ISG + ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWAEAKGFKTEVIEVSEGEVAGLKGATIKISGEYAYGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 SGR HTS A+ + PE + +DI D+RID RASG+GGQHVNTT+SAVRITH+PT Sbjct: 177 SGRRHTSFASAFIYPEIDDNIQIDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTN 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y Sbjct: 237 TVVQCQNDRSQHKNKDQAMKQLRAKLFELEIQKQNAEKQANEDAKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 294 VLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 329 >gi|73914009|sp|Q9CP66|RF2_PASMU RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 365 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + K L +E A+ +++ I DQ ++ + L + Sbjct: 28 DAKVERLEEVNAELEQPDVWNEPEKAQALGKERVALEGVVNTIHTLDQGLEDVEGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + ++ + ++ + + + + D C ++++AG+GG+EA Sbjct: 88 IEAEDEATFHEAVAELEELEQQLAK-----LEFRRMFSGQHDAADCYVDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 143 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGIKSATIKVSGEYAFGWLRTETGIHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSNNRRHTSFSAAFVYPEIDDDIDIDINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIP+GI+V +++SQH+N+ + MK L+A+LY++E ++ ++ + K IG G Sbjct: 263 ITHIPSGIVVQCQNDRSQHKNKDQCMKQLKAKLYEMELQKKNADKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 363 >gi|1172913|sp|P43918|RF2_HAEIN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|309751145|gb|ADO81129.1| Peptide chain release factor 2 (RF-2) [Haemophilus influenzae R2866] Length = 365 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E ++ +++ I +Q ++ L + Sbjct: 28 DAKVERLEEVNGELEQPDVWNDPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 88 IEAEDEDTFNEAV-----AELDELEQQLEKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 143 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 263 ITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 363 >gi|295836498|ref|ZP_06823431.1| peptide chain release factor 1 [Streptomyces sp. SPB74] gi|197699008|gb|EDY45941.1| peptide chain release factor 1 [Streptomyces sp. SPB74] Length = 357 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 213/351 (60%), Gaps = 20/351 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L AE+E +++ +L++ YA ++PI+ + + Sbjct: 3 EAVEELIGEHAELERTLADPSVHADQANARRLSKRYAELTPIVGTYRAWRATGDDIATAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + E+ +++ EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAAEDPE-------FAAEIKQLDERREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG---------RGVFS 174 E+ALF GDL RMY RYA WK E+L +++++ GGYK++ + +GV++ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTEILDATESELGGYKDVQVAVKTKGNANPEPGQGVWA 175 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 RMK+E GVHRVQRVP+TE+ GR+HTSAA V V PEA E+DV+I D+RID R+SG GG Sbjct: 176 RMKYEGGVHRVQRVPSTESQGRIHTSAAGVLVTPEAEEVDVEINPNDLRIDVYRSSGPGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVRITH+PTG++ +EKSQ QN+ +A+++LR+RL ++ E + R Sbjct: 236 QSVNTTDSAVRITHLPTGVVASCQNEKSQLQNKEQALRILRSRLLAAAQEEAEREAADAR 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + Q+ + DRSE+IRTYNF + RI+DHR+ Y L+ VL G +D +I + Sbjct: 296 RSQVRTVDRSEKIRTYNFPENRISDHRVGFKAYNLDQVLDGELDAVIQACV 346 >gi|300860397|ref|ZP_07106484.1| peptide chain release factor 2, programmed frameshift [Enterococcus faecalis TUSoD Ef11] gi|300849436|gb|EFK77186.1| peptide chain release factor 2, programmed frameshift [Enterococcus faecalis TUSoD Ef11] Length = 366 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 181/344 (52%), Gaps = 10/344 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--I 66 + L+ AE E RM E D + + + K + Q +E +L + + Sbjct: 26 LDQLEEDIAEAENRMGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFEL 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D+EI++ + + +++ + E LL + D + ++E+ G GG+E+ Sbjct: 86 QQEEYDAEIQEELEERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A ++VE L D+ G K + I G + +K E GVHR+ Sbjct: 142 DWGSMLLRMYTRWAESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS +V V+PE + I +D++IDT RASG+GGQH+N T+SAVR Sbjct: 202 RISPFDSAKRRHTSFCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTG +V + +++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G Sbjct: 262 ITHIPTGTVVASQAQRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGS 320 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +D I+ L Sbjct: 321 QIRSYVFHPYSMVKDHRTNYETGNVQAVMDGDLDGFIDAYLKQR 364 >gi|163857078|ref|YP_001631376.1| peptide chain release factor 2 [Bordetella petrii DSM 12804] gi|163260806|emb|CAP43108.1| peptide chain release factor 2 [Bordetella petrii] Length = 337 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 104/340 (30%), Positives = 178/340 (52%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R + + + + L E ++ +++ ++ + +L + + Sbjct: 4 ERLQVVNAELEDPAVWNDPKHAQDLGREKKSLEDVVTTLTALRSGVADALELFELAS-AD 62 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + + ++++ LE + + + D +C L+I+AG GG+EA + Sbjct: 63 DDDATLESIESDADGFQQQLEGLE----FRRMFSNPADPLNCFLDIQAGAGGTEAQDWAS 118 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L R Y +YA + +K EVL S+ + G K + G F ++ E+GVHR+ R Sbjct: 119 MLLRQYLKYAERKGFKAEVLEESEGEVAGIKSATIKLEGDYAFGYLRTETGVHRLVRKSP 178 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++SG HTS A+V V PE ++D+ D+R+DT RASG+GGQH+N TDSAVR+TH+ Sbjct: 179 FDSSGGRHTSFASVFVYPEVDDSFEIDVNPADLRVDTYRASGAGGQHINKTDSAVRLTHL 238 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V +++SQH+NR AM++L+++LY++E + E+ + K +G G +I Sbjct: 239 PTGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMAEQQKLEDSKTDVGWG---HQI 295 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y Q RI D R N+ + + VL G +D I L Sbjct: 296 RSYVLDQSRIKDLRTNVEISNTQKVLDGDLDTFIQASLKQ 335 >gi|301629497|ref|XP_002943876.1| PREDICTED: peptide chain release factor 1-like [Xenopus (Silurana) tropicalis] Length = 460 Score = 236 bits (601), Expect = 5e-60, Method: Composition-based stats. Identities = 148/267 (55%), Positives = 195/267 (73%), Gaps = 2/267 (0%) Query: 92 ELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS 151 LENE+ LLLPKD DD ++ LEIRAGTGG E+ALF GDL R+Y RYAA W+VE++S Sbjct: 191 FLENELQRLLLPKDPDDARNAFLEIRAGTGGDESALFAGDLARVYTRYAATVGWRVEIMS 250 Query: 152 SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 +++++ GGYKE+V I G V+ ++FESG HRVQRVPATE GR+HTSA TVAV+PE Sbjct: 251 ANESELGGYKEVVLRIEGDHVYGALRFESGGHRVQRVPATETQGRIHTSACTVAVMPEPD 310 Query: 212 EIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 E + D+RIDT RASG+GGQH+N TDSAVR+ HIPTGI+ +SQH N+ +A Sbjct: 311 EQQAIMLNPADLRIDTFRASGAGGQHINKTDSAVRVVHIPTGIVAECQDGRSQHSNKAKA 370 Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 ++VL+AR+ D ER A + +A R+ IGSGDRS+RIRTYNF QGR TDHRINLTLYKL Sbjct: 371 LQVLQARIQDKERSERAAKEAAVRRGLIGSGDRSDRIRTYNFPQGRFTDHRINLTLYKLL 430 Query: 330 YVLQGYIDDIINPLLTAHQAKMIGSAS 356 +++G + +++ L A +A+++ Sbjct: 431 AIMEGDLGEVLQALQHAREAELLVEME 457 >gi|227891182|ref|ZP_04008987.1| peptide chain release factor 2 [Lactobacillus salivarius ATCC 11741] gi|227867056|gb|EEJ74477.1| peptide chain release factor 2 [Lactobacillus salivarius ATCC 11741] Length = 355 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 19/357 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 + L+ + AE E RM+E D K E A + + +K + + + DL Sbjct: 8 DLDALEEKIAENEARMAEPGFWDDQEKAQEVIAENNDLKAKFETFHELAESISDLGVSLE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E++ + +L +L + D + ILEI G GG+E Sbjct: 68 LLQEIPDDEELQADLEENYQH----AEKLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A+ +KVE + DD G K + I G+ + ++ E GVHR Sbjct: 124 SQDWGSMLLRMYTRWASQHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++GR HTS A+V V+PE ++V++ EDI+++ RASG+GGQH+N T SA Sbjct: 184 LVRISPFDSAGRRHTSFASVNVMPELDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+ HIPTGI+V + +++SQ QNR A +LRA+LY +E + +R+A + Q IG G Sbjct: 244 VRLIHIPTGIVVSSQAQRSQFQNRATAENMLRAKLYQLEVEEKEKQRAAIQGEQLDIGWG 303 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IR+Y F + DHR + ++ V+ G +D IN L + A+ Sbjct: 304 ---SQIRSYVFHPYSMVKDHRTDYETGNIQAVMDGDLDPFINAYLQW----KLQQAN 353 >gi|218555439|ref|YP_002388352.1| peptide chain release factor 2 [Escherichia coli IAI1] gi|226739127|sp|B7LYF5|RF2_ECO8A RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|218362207|emb|CAQ99825.2| peptide chain release factor RF-2 [Escherichia coli IAI1] Length = 365 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|157162351|ref|YP_001459669.1| peptide chain release factor 2 [Escherichia coli HS] gi|166977373|sp|A8A432|RF2_ECOHS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157068031|gb|ABV07286.1| peptide chain release factor 2 [Escherichia coli HS] Length = 365 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|256821963|ref|YP_003145926.1| peptide chain release factor 2 [Kangiella koreensis DSM 16069] gi|256795502|gb|ACV26158.1| bacterial peptide chain release factor 2 (bRF- 2) [Kangiella koreensis DSM 16069] Length = 365 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+E + + + L +E A + +++ I + + Q+L + Sbjct: 28 DSKQERLVEVERELEQPDVWNDQERAQSLGQERAKLETVVNTIKDLEAGIDDNQELLELS 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + + + D+ + L+I+AG+GG+EA Sbjct: 88 VEEDDAESVAEIENEVKQLNTSLEK-----LEFRRMFSGEMDENNAYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R +K EV SD D G K + G + ++ E+GVHR+ Sbjct: 143 DWASILLRMYLRWCESRGFKAEVTEESDGDVAGIKSATIRVEGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + D+++ D+R+DT RASG+GGQHVN TDSA+R Sbjct: 203 RKSPFDSGNRRHTSFASVFVYPEVDDSIDIEVNPADLRVDTYRASGAGGQHVNKTDSAIR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +++SQH+NR +AM +++A+LY++E ++ E+ + K IG G Sbjct: 263 LTHIPTGIVVQCQNDRSQHKNRAQAMSMMKAKLYELEMQKQREEQQALEDTKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R VL G +D I L A Sbjct: 321 -SQIRSYVLDQSRIKDLRTGHESSNTTAVLDGDLDSFIEASLKA 363 >gi|295676932|ref|YP_003605456.1| hypothetical protein BC1002_1882 [Burkholderia sp. CCGE1002] gi|295436775|gb|ADG15945.1| conserved hypothetical protein [Burkholderia sp. CCGE1002] Length = 367 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D R E+ + + + L +E + + K++ + QDL + Sbjct: 30 DDKALRLIEVNRELEDPDVWNDAKHAQALGKEKKLLDDTVGKLTSITNDVNDAQDLFDMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + A + I ++ + + + D + L+I+AG GG+EA Sbjct: 90 REEADDETLLACE-----ADAQAIEARVADMEFRRMFANPADPNNAFLDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL ++ D G K I G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKTEVLEQTEGDVAGIKNATIKIEGEYAYGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS ++V V PE + +V+I D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+P+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 265 ITHMPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQAEQDKLEAGKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 365 >gi|293189723|ref|ZP_06608439.1| peptide chain release factor 1 [Actinomyces odontolyticus F0309] gi|292821313|gb|EFF80256.1| peptide chain release factor 1 [Actinomyces odontolyticus F0309] Length = 364 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 137/358 (38%), Positives = 204/358 (56%), Gaps = 19/358 (5%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L + ++E +M++ ++ ++ YA + + + + + + + Sbjct: 13 LLQEYEQVEAQMADPQTLADPQLMRRVGRRYAELGRVKAAADRLASASGDLEAARELAAE 72 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 S ++ + E A + + ++ L P+D +D ILEI+AG GG E+ALF Sbjct: 73 DRSFADEIPALEEEEAAAHEALVKI-------LAPRDPEDAMDVILEIKAGEGGEESALF 125 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 DL RMY RYA W V +S++ + GG+K+I I GV++ +K+E G Sbjct: 126 ASDLARMYARYAEAHGWSVTEMSATHTELGGFKDITLAIRAKGTPAPDEGVWAHLKYEGG 185 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TE+ GR+HTSAA V V+PE + + I D+RID R+SG GGQ VNTT Sbjct: 186 VHRVQRVPVTESQGRIHTSAAGVFVMPEIEDDEEIVIDPNDLRIDVYRSSGPGGQSVNTT 245 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+V+ +EKSQ QN+ A++VL +RL R + E SA R Q+ + Sbjct: 246 DSAVRITHIPSGIVVSMQNEKSQLQNKEAALRVLASRLAAEARAKKEAEASAQRLSQVRT 305 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF + RI DHR + L+ VL G +D +I L A +A+ + +A++ Sbjct: 306 VDRSERIRTYNFPENRIADHRTGFKAHNLDAVLSGALDAVIASLQEADEAERLAAAAQ 363 >gi|154509273|ref|ZP_02044915.1| hypothetical protein ACTODO_01798 [Actinomyces odontolyticus ATCC 17982] gi|153798907|gb|EDN81327.1| hypothetical protein ACTODO_01798 [Actinomyces odontolyticus ATCC 17982] Length = 364 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 138/358 (38%), Positives = 204/358 (56%), Gaps = 19/358 (5%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L + ++E +M++ ++ ++ YA + + + + + + + Sbjct: 13 LLQEYEQVEAQMADPQTLADPQLMRRVGRRYAELGRVKAAADRLASASGDLEAARELAAE 72 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 S ++ + E A + + ++ L P+D +D ILEI+AG GG E+ALF Sbjct: 73 DRSFADEIPALEEEEAAAHEALVKI-------LAPRDPEDAMDVILEIKAGEGGEESALF 125 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 DL RMY RYA W V +S++ + GG+K+I I GV++ +K+E G Sbjct: 126 ASDLARMYARYAEAHGWSVTEMSATHTELGGFKDITLAIRAKGTPAPDEGVWAHLKYEGG 185 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TE+ GR+HTSAA V V+PE + + I D+RID R+SG GGQ VNTT Sbjct: 186 VHRVQRVPVTESQGRIHTSAAGVFVMPEIEDDEEIVIDPNDLRIDVYRSSGPGGQSVNTT 245 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIP+GI+V+ +EKSQ QN+ A++VL +RL R R E SA R Q+ + Sbjct: 246 DSAVRITHIPSGIVVSMQNEKSQLQNKEAALRVLASRLAAEARARKEAEASAQRLSQVRT 305 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF + RI DHR + L+ VL G +D +I L A +A+ + +A++ Sbjct: 306 VDRSERIRTYNFPENRIADHRTGFKAHNLDAVLSGALDAVIASLQEADEAERLAAAAQ 363 >gi|90962160|ref|YP_536076.1| peptide chain release factor 2 [Lactobacillus salivarius UCC118] gi|301301257|ref|ZP_07207412.1| peptide chain release factor 2 [Lactobacillus salivarius ACS-116-V-Col5a] gi|90821354|gb|ABD99993.1| Bacterial Peptide Chain Release Factor 2 [Lactobacillus salivarius UCC118] gi|300851133|gb|EFK78862.1| peptide chain release factor 2 [Lactobacillus salivarius ACS-116-V-Col5a] Length = 355 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 19/357 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 + L+ + AE E RM+E D K E A + + +K + + + DL Sbjct: 8 DLDALEEKIAENEARMAEPGFWDDQEKAQEVIAENNDLKAKFETFHELAESISDLGVSLE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E++ + +L +L + D + ILEI G GG+E Sbjct: 68 LLQEIPDDEELQADLEENYQH----AEKLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A+ +KVE + DD G K + I G+ + ++ E GVHR Sbjct: 124 SQDWGSMLLRMYTRWASQHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++GR HTS A+V V+PE ++V++ EDI+++ RASG+GGQH+N T SA Sbjct: 184 LVRISPFDSAGRRHTSFASVNVMPELDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+ HIPTGI+V + +++SQ QNR A +LRA+LY +E + +R+A + Q IG G Sbjct: 244 VRLIHIPTGIVVSSQAQRSQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWG 303 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IR+Y F + DHR + ++ V+ G +D IN L + A+ Sbjct: 304 ---SQIRSYVFHPYSMVKDHRTDYETGNIQAVMDGDLDPFINAYLQW----KLQQAN 353 >gi|255324516|ref|ZP_05365633.1| peptide chain release factor 1 [Corynebacterium tuberculostearicum SK141] gi|255298422|gb|EET77722.1| peptide chain release factor 1 [Corynebacterium tuberculostearicum SK141] Length = 358 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 148/358 (41%), Positives = 213/358 (59%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M++ + KL++ YA + PII Q +++ D + Sbjct: 8 VDDIVSEYQGIEMQMADPEVAGDQKQFRKLSKRYAELRPIIMVNDELTQAREDLADAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + E D +EK + LE ++ LL P+D D + I+EI+AG GG EA Sbjct: 68 AYEDHDFQEEAD-------RLEKSVENLEEKLADLLAPRDEQDSEDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMYERYA + EVL +++D GG K++ + + +S KFE Sbjct: 121 ALFAGDLARMYERYADKTGFNWEVLGLNESDLGGVKDMTISFRSKSPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E++ +I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPEEVESVNIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ E R Q+ Sbjct: 241 TDSAVRITHLPTGLIVTCQKERSQIQNKARALQVLQARLDQMEREAREAEAGEQRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYN+ + RITDHRI L+ VL G ++D+I L +A+ + + Sbjct: 301 TMDRSERIRTYNWPENRITDHRIGYKANNLDSVLNGDMNDLIKALQDQERAERLEAEG 358 >gi|16080582|ref|NP_391409.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. 168] gi|6174964|sp|P28367|RF2_BACSU RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|2331287|gb|AAC97534.1| release factor 2 [Bacillus subtilis] gi|2618874|gb|AAC67303.1| putative peptide chain release factor RF-2 [Bacillus subtilis] gi|2636055|emb|CAB15546.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. 168] Length = 366 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 114/343 (33%), Positives = 176/343 (51%), Gaps = 10/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R AE++ +M++ + K + + ++ Y + + ++L Sbjct: 25 DLESKEARIAELDEQMADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHD 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + ++E E E+ L + D + ILE+ G GG+E+ Sbjct: 85 LLKEEPDTDLQLELEKELKSLTKEFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ R +KVE L D+ G K + I G + +K E GVHR+ R Sbjct: 143 WGSMLLRMYTRWGERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++SGR HTS + V+PE + D+DI EDI++DT RASG+GGQHVNTTDSAVRI Sbjct: 203 ISPFDSSGRRHTSFVSCEVMPEFNDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRS 303 TH+PT ++V +E+SQ +NR RAMK+L+A+LY + E R Q IG G Sbjct: 263 THLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG--- 319 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + ++ V+ G ID I+ L Sbjct: 320 SQIRSYVFHPYSMVKDHRTNTEMGNVQAVMDGDIDTFIDAYLR 362 >gi|251799706|ref|YP_003014437.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2] gi|247547332|gb|ACT04351.1| hypothetical protein Pjdr2_5745 [Paenibacillus sp. JDR-2] Length = 368 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 119/343 (34%), Positives = 180/343 (52%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + A E +M+ D K + ++ I S + Y++ + +DL T+I Sbjct: 25 DLDLKLEHIANFEEKMTAPDFWDDNTKAQGIISELNAIKSVVEHYERLNADCEDLQTLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E D + EV+ + E N LL D + ILE+ G GG+E+ Sbjct: 85 LA--DEESDDSLEAEVIGGIASLNEKVNGFELQLLLNQPYDKLNAILELHPGAGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A R +KVEVL D D+ G K + + G + +K E GVHR+ R Sbjct: 143 WAQMLYRMYTRWAEKRGFKVEVLDYLDGDEAGIKSVTIAVKGYNAYGYLKAEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++SGR HTS + V+PE E +V+I ED+++DT RASG+GGQHVN T+SA+RI Sbjct: 203 ISPFDSSGRRHTSFVSCDVVPEITEDIEVEIRTEDLKVDTYRASGAGGQHVNKTESAIRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V E+SQ QNR RAM +LR++LY+ + + + R Q + Sbjct: 263 THIPTGIVVACQQERSQIQNRERAMNMLRSKLYERKIEEQQKHLAEIRGEQ-SDIAWGSQ 321 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y F + DHR ++ + V+ G +D I+ L + Sbjct: 322 IRSYVFHPYSMVKDHRTSVETGNVGAVMDGDLDAFIDGYLRSQ 364 >gi|313837661|gb|EFS75375.1| peptide chain release factor 1 [Propionibacterium acnes HL037PA2] gi|314972601|gb|EFT16698.1| peptide chain release factor 1 [Propionibacterium acnes HL037PA3] Length = 388 Score = 235 bits (600), Expect = 6e-60, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 204/364 (56%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + I +++ R EIE++++ + +L + +A + ++S DQ Sbjct: 28 MSESAQHAIDEIRRRLREIEIQLANPAVLSDPSAMGRLGKRHARLRHVVSVADNVDQLNA 87 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + +++ ++ E LL P D D + ++EI Sbjct: 88 DIEAAEDLANE--DPVFVQEAERLRGQLDLARTELTE-----LLAPSDPLDQEDALVEIH 140 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 141 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSELTDLGGYRTVVVAVGGVPSRPAYG 200 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI DIR+D R+SG GG Sbjct: 201 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPADIRVDVYRSSGPGG 260 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 261 QGVNTTDSAVRLTHLPTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 320 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + ++++ L + + Sbjct: 321 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGEVLDALHADEVRRRMA 380 Query: 354 SASE 357 SE Sbjct: 381 QQSE 384 >gi|311278189|ref|YP_003940420.1| Peptide chain release factor 2 [Enterobacter cloacae SCF1] gi|308747384|gb|ADO47136.1| Peptide chain release factor 2 [Enterobacter cloacae SCF1] Length = 365 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ ++ Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTLNQMAQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K EV+ S+ + G K ISG + ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWAEARGFKTEVIEESEGEVAGLKSATIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIP+G++ +++SQH+N+ +AMK ++A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPSGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|28373662|pdb|1MI6|A Chain A, Docking Of The Modified Rf2 X-Ray Structure Into The Low Resolution Cryo-Em Map Of Rf2 E.Coli 70s Ribosome Length = 365 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY+VE ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYEVEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|311898376|dbj|BAJ30784.1| putative peptide chain release factor 1 [Kitasatospora setae KM-6054] Length = 358 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 212/349 (60%), Gaps = 18/349 (5%) Query: 7 KQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A++E R+++ KL + YA ++PI + Q ++ Sbjct: 3 EAVEELLVEHADLEKRLADPSVHADQANARKLAKRYAELTPITRTYLAWRQAGEDIVAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + E A E EL E+ LL+P+D +DDK ILE++AG GG Sbjct: 63 ELATEDPD-------FIAEAKASEARQDELTEELRLLLVPRDPNDDKDVILEVKAGEGGE 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVFSRM 176 E+ALF GDL RMY RYA WK E++ ++++D GGYK++ + +GV++R+ Sbjct: 116 ESALFAGDLLRMYLRYAERVGWKTELIDANESDLGGYKDVSVAVKTRGSAEPGQGVWARL 175 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+E GVHRVQRVPATE+ GR+HTSAA V V PEA E++V+I D+RID R+SG GGQ Sbjct: 176 KYEGGVHRVQRVPATESQGRIHTSAAGVLVTPEAEEVEVEIHANDLRIDVYRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+ +EKSQ QN+ +AM++LR+RL ++ E S R+ Sbjct: 236 VNTTDSAVRITHLPTGIVASCQNEKSQLQNKEQAMRILRSRLLAAAQEEAEREASDARRS 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Q+ + DRSERIRTYNF + RI+DHR Y L+ VL G ++ +I + Sbjct: 296 QVRTVDRSERIRTYNFPENRISDHRTGFKSYNLDQVLDGDLNAVIQSCV 344 >gi|239828320|ref|YP_002950944.1| hypothetical protein GWCH70_3007 [Geobacillus sp. WCH70] gi|239808613|gb|ACS25678.1| hypothetical protein GWCH70_3007 [Geobacillus sp. WCH70] Length = 367 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 179/346 (51%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + R E+E +M+ D + ++ + +++ + + + Sbjct: 26 DLETKQARIRELEEQMAAPNFWDDQKAAQTVINEANALKDLVGEFQSLEERFENLEVTYE 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + + ++L + LL + D + ILE+ G GG+E Sbjct: 86 LIKEEPDEDLQQELVAEAKKLTKDFSE-----FELQLLLNEPYDKNNAILELHPGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE L ++ G K + I G + +K E GVHR Sbjct: 141 SQDWASMLLRMYTRWAEKKGFKVETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +ASGR HTS + V+PE + +++I E+I++DT R+SG+GGQHVNTTDSA Sbjct: 201 LVRISPFDASGRRHTSFVSCEVMPEMDDDIEIEIRPEEIKVDTYRSSGAGGQHVNTTDSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITHIPTGI+V SE+SQ +NR +AM +L+A+LY + + E + R Q IG G Sbjct: 261 VRITHIPTGIVVTCQSERSQIKNREKAMNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWG 320 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F + DHR N+ + ++ V+ G ID I+ L Sbjct: 321 N---QIRSYVFHPYSLVKDHRTNVEVGNVQAVMDGEIDIFIDAYLR 363 >gi|147569|gb|AAA24520.1| peptide chain release factor 2 [Escherichia coli] Length = 365 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHRV Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRVV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID R SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|20663625|pdb|1GQE|A Chain A, Polypeptide Chain Release Factor 2 (Rf2) From Escherichia Coli Length = 365 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQXKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRXFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASXLERXYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +A K +A+LY+VE ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAXKQXKAKLYEVEXQKKNAEKQAXEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|319777684|ref|YP_004137335.1| peptide chain release factor 1 [Mycoplasma fermentans M64] gi|318038759|gb|ADV34958.1| Peptide chain release factor 1 [Mycoplasma fermentans M64] Length = 358 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 228/353 (64%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+KN + + ++ + ++ Y K+++E I I + Y + + D + Sbjct: 9 LSDIKNTYDNLVKKLDDHEVINNIKEYTKISKEVNKIKDIAETFTKYLNLQNDYNDAKVM 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I N + + A+ + E ++ +LE E+ L+LPKD +DDK+ I+EIR GG EA Sbjct: 69 INSKNEEEVL--FAKSIIEENEVKLAQLEEELKILILPKDENDDKNVIMEIRGAAGGDEA 126 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDLF+MY ++A +K++V+SSS GG+ +IV +I G +S++KFESGVHRV Sbjct: 127 NIFAGDLFKMYTKFAEDLNFKLKVISSSAASVGGFTQIVFSIKGDKAYSKLKFESGVHRV 186 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVP TE++GR+HTS ATV V+PE + D++I +D++IDT R+SG+GGQ VNTTDSAV Sbjct: 187 QRVPVTESAGRIHTSTATVTVMPEIDDSVDIEIKPQDLQIDTYRSSGAGGQSVNTTDSAV 246 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V+ E+SQ NR A+ VL+++LYD+E ++ E + RKL G GDRS Sbjct: 247 RITHLPTGIVVSSQDERSQIANRETALTVLKSKLYDLEIQKKQQEEAGYRKLA-GHGDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ Q R+TDHRI + L+ V++G + II LLT Q + I + Sbjct: 306 EKIRTYNYPQDRVTDHRIGYSTS-LKQVMEGKLLTIIEALLTEEQNQKIKESG 357 >gi|300214843|gb|ADJ79259.1| Bacterial Peptide Chain Release Factor 2 [Lactobacillus salivarius CECT 5713] Length = 355 Score = 235 bits (600), Expect = 7e-60, Method: Composition-based stats. Identities = 115/357 (32%), Positives = 186/357 (52%), Gaps = 19/357 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + L+ + AE E RM+E D K E A + + +K + + + DL Sbjct: 8 DLDALEEKIAENEARMAEPGFWDDQEKAQEVIAENNDLKAKFETFHELAESISDLEVSLE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E++ + +L +L + D + ILEI G GG+E Sbjct: 68 LLQEIPDDEELQADLEENYQH----AEKLLQSYQLNMLLSEKYDKNNAILEIHPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A+ +KVE + DD G K + I G+ + ++ E GVHR Sbjct: 124 SQDWGSMLLRMYTRWASQHDFKVETVDYQPGDDAGIKSVTLMIEGKNAYGYLRSERGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++GR HTS A+V V+PE ++V++ EDI+++ RASG+GGQH+N T SA Sbjct: 184 LVRISPFDSAGRRHTSFASVNVMPELDDSVEVELRPEDIKMEVFRASGAGGQHINKTSSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+ HIPTGI+V + +++SQ QNR A +LRA+LY +E + +R+A + Q IG G Sbjct: 244 VRLIHIPTGIVVSSQAQRSQFQNRATAENMLRAKLYQLEMEEKEKQRAAIQGEQLDIGWG 303 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IR+Y F + DHR + ++ V+ G +D IN L + A+ Sbjct: 304 ---SQIRSYVFHPYSMVKDHRTDYETGNIQAVMDGDLDPFINAYLQW----KLQQAN 353 >gi|257453984|ref|ZP_05619260.1| peptide chain release factor 2 [Enhydrobacter aerosaccus SK60] gi|257448649|gb|EEV23616.1| peptide chain release factor 2 [Enhydrobacter aerosaccus SK60] Length = 349 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 176/346 (50%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+ L + + K+++E + + +I I+ D K ++ + + Sbjct: 10 DIEAKQERLEEVNLELENPELWNDPERATKISKEKSQLDNVIGVITALDDKLEDAKAMID 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + + D+ A E ++ + + D +C ++I++G+GG+E Sbjct: 70 LAVEADDATLLADVQ-----AELDEAEAKVADLEFKRMFSGEMDGNNCYVDIQSGSGGTE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+ +K E++ S G K + G F ++ E GVHR Sbjct: 125 AQDWAEMLLRMYLRWCESHGFKAEIMELSAGGVAGIKSASIHVKGDYAFGWLRTEIGVHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +++ HTS A V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 185 LVRKSPFDSNNGRHTSFAAVFVSPEIDDNIEIDINPADLRIDTYRSSGAGGQHVNTTDSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH PTGI+V +E+SQH N+ AMK+LRA+LY+ E + ++ A K IG G Sbjct: 245 VRITHQPTGIVVACQNERSQHANKDTAMKMLRAKLYEREMMQRMEKQQALEETKSDIGWG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 305 ---SQIRSYVLDDSRIKDLRTGVETSNTQAVLDGDLDKFIEASLKA 347 >gi|16130793|ref|NP_417367.1| peptide chain release factor RF-2 [Escherichia coli str. K-12 substr. MG1655] gi|89109670|ref|AP_003450.1| peptide chain release factor RF-2 [Escherichia coli str. K-12 substr. W3110] gi|170082452|ref|YP_001731772.1| peptide chain release factor RF-2 [Escherichia coli str. K-12 substr. DH10B] gi|238902016|ref|YP_002927812.1| peptide chain release factor RF-2 [Escherichia coli BW2952] gi|2507293|sp|P07012|RF2_ECOLI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|229576667|sp|B1XEH8|RF2_ECODH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|259585244|sp|C5A0G3|RF2_ECOBW RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|28373696|pdb|1ML5|Z Chain Z, Structure Of The E. Coli Ribosomal Termination Complex With Release Factor 2 gi|2367172|gb|AAC75929.1| peptide chain release factor RF-2 [Escherichia coli str. K-12 substr. MG1655] gi|85675703|dbj|BAE76956.1| peptide chain release factor RF-2 [Escherichia coli str. K12 substr. W3110] gi|169890287|gb|ACB03994.1| peptide chain release factor RF-2 [Escherichia coli str. K-12 substr. DH10B] gi|238861985|gb|ACR63983.1| peptide chain release factor RF-2 [Escherichia coli BW2952] gi|260448063|gb|ACX38485.1| hypothetical protein EcDH1_0801 [Escherichia coli DH1] gi|315137490|dbj|BAJ44649.1| peptide chain release factor RF-2 [Escherichia coli DH1] gi|228558|prf||1806195A peptide chain-releasing factor:ISOTYPE=2 Length = 365 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID R SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|78047471|ref|YP_363646.1| peptide chain release factor 2 [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|123585257|sp|Q3BUB7|RF2_XANC5 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|78035901|emb|CAJ23592.1| peptide chain release factor 2 [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 374 Score = 235 bits (599), Expect = 7e-60, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 165/344 (47%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + L E + + + I+ + DL + Sbjct: 28 DAKKERLEEVSRELESPDVWNDAERAQALGRERSMLEKTVIGIADVLSGLADAGDLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + ++ + + +LE + D + ++I+AG GG+EA Sbjct: 88 -ESEQDEDTALAVIADLDNYQAHVEKLEFQRM----FSGQMDSANAFVDIQAGAGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R WK E++ S + G K I G + +K E GVHR+ Sbjct: 143 DWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +V V PE I++DI D+R D R+SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT +V + +SQHQNR AMK+L A+LY++E ++ E+ A K IG G Sbjct: 263 ITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKRNAEKDALEATKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y Q RI D R + + VL G +D+ + L A Sbjct: 321 -SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKA 363 >gi|269114934|ref|YP_003302697.1| Peptide chain release factor 1 [Mycoplasma hominis] gi|268322559|emb|CAX37294.1| Peptide chain release factor 1 [Mycoplasma hominis ATCC 23114] Length = 359 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 154/361 (42%), Positives = 232/361 (64%), Gaps = 8/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + + +KN++ E+ ++++ + AY ++ +E + + I Y ++ Sbjct: 1 MEKTMYDSLLSIKNQYDELTEKLNDPNIYNDIKAYTRIAKEKSELQEIYDAFKKYQNIEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ + D E+ +LA+ ++ +++E+E EI LLLP+D +D + I+EIR Sbjct: 61 LYFLSKEILT-NEKDQELIELAKNDIDNQMNQLQEIEEEIKELLLPQDENDKRDVIMEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLF+MY++YA ++ +K++++ S+ GGY +IV +I G VFS++K Sbjct: 120 GAAGGDEANIFSGDLFKMYQKYAEIKGFKIKIIDSTYGAAGGYSQIVFSIKGEKVFSQLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FE GVHRVQRVPATE GRVHTS ATV VLPE E ++I EDI ++ R+SG+GGQ Sbjct: 180 FERGVHRVQRVPATETQGRVHTSTATVTVLPEVDEDVKIEIRPEDIEVNVFRSSGAGGQS 239 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH PTG++V + E+SQ QN+ A+KVL++RLY++E ++ S RKL Sbjct: 240 VNTTDSAVRITHKPTGLVVTSQDERSQIQNKETALKVLKSRLYELELRKREEAESGLRKL 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G+GDRSE+IRTYN+ Q RITDHRI + L+ V++G +D II L+ +AK I A Sbjct: 300 A-GTGDRSEKIRTYNYPQDRITDHRIGFSTS-LKVVMEGELDKIIEALIADEKAKKIIEA 357 Query: 356 S 356 Sbjct: 358 G 358 >gi|229819782|ref|YP_002881308.1| peptide chain release factor 1 [Beutenbergia cavernae DSM 12333] gi|229565695|gb|ACQ79546.1| peptide chain release factor 1 [Beutenbergia cavernae DSM 12333] Length = 373 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 204/359 (56%), Gaps = 19/359 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + EIE +++ L YA + ++ + + + + Sbjct: 18 EPMLAEHREIEAALADPAVHADAGRARALGRRYAELGRVVGAYRAWRRAADDATAAAELA 77 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D +A L +L+P+D DD + ILEI+AG GG E+A Sbjct: 78 VE---DDAFASEVPALQVAEADAAEHL----RRVLVPRDPDDGRDVILEIKAGEGGEESA 130 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFE 179 LF GDL RMY R+A R W+ +VL ++++D GGYK++ + GV++ +K+E Sbjct: 131 LFAGDLLRMYLRFAERRGWQTQVLEATESDLGGYKDVQVAVKSRGAAAPEDGVWAALKYE 190 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVN 238 GVHRVQRVP TE+ GR+HTSAA V VLPE + +V+I D+RID R+SG GGQ VN Sbjct: 191 GGVHRVQRVPVTESQGRIHTSAAGVLVLPEVDDPGEVEIEGGDLRIDVFRSSGPGGQSVN 250 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTGI+V+ +EKSQ QNR +AM+VLRARL +++ A E + R+ Q+ Sbjct: 251 TTDSAVRITHLPTGIVVSMQNEKSQLQNREQAMRVLRARLLAAQQEAAAAEAAEARRSQV 310 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYNF + RI DHR Y L+ VL G +D ++ + A +A + + Sbjct: 311 RTVDRSERIRTYNFPENRIADHRTGYKAYNLDAVLAGDLDAVVASAVEADEAARLAALG 369 >gi|15833017|ref|NP_311790.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. Sakai] gi|26249306|ref|NP_755346.1| peptide chain release factor 2 [Escherichia coli CFT073] gi|30064203|ref|NP_838374.1| peptide chain release factor 2 [Shigella flexneri 2a str. 2457T] gi|170018863|ref|YP_001723817.1| peptide chain release factor 2 [Escherichia coli ATCC 8739] gi|170682178|ref|YP_001745044.1| peptide chain release factor 2 [Escherichia coli SMS-3-5] gi|215488191|ref|YP_002330622.1| peptide chain release factor 2 [Escherichia coli O127:H6 str. E2348/69] gi|218550138|ref|YP_002383929.1| peptide chain release factor 2 [Escherichia fergusonii ATCC 35469] gi|218559884|ref|YP_002392797.1| peptide chain release factor 2 [Escherichia coli S88] gi|218691016|ref|YP_002399228.1| peptide chain release factor 2 [Escherichia coli ED1a] gi|218696486|ref|YP_002404153.1| peptide chain release factor 2 [Escherichia coli 55989] gi|218701600|ref|YP_002409229.1| peptide chain release factor 2 [Escherichia coli IAI39] gi|218706397|ref|YP_002413916.1| peptide chain release factor 2 [Escherichia coli UMN026] gi|253772268|ref|YP_003035099.1| peptide chain release factor 2 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162803|ref|YP_003045911.1| peptide chain release factor 2 [Escherichia coli B str. REL606] gi|260845559|ref|YP_003223337.1| peptide chain release factor RF-2 [Escherichia coli O103:H2 str. 12009] gi|260857014|ref|YP_003230905.1| peptide chain release factor RF-2 [Escherichia coli O26:H11 str. 11368] gi|260869568|ref|YP_003235970.1| peptide chain release factor RF-2 [Escherichia coli O111:H- str. 11128] gi|54039052|sp|P66024|RF2_ECO57 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|54039053|sp|P66025|RF2_SHIFL RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|54041596|sp|P66023|RF2_ECOL6 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|189040000|sp|B1ITB1|RF2_ECOLC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226739125|sp|B7MM78|RF2_ECO45 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226739126|sp|B7NW32|RF2_ECO7I RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226739128|sp|B7N7D5|RF2_ECOLU RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226739129|sp|B1LR73|RF2_ECOSM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226739130|sp|B7LPA4|RF2_ESCF3 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790914|sp|B7UHU0|RF2_ECO27 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790915|sp|B7LF76|RF2_ECO55 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790916|sp|B7MZI9|RF2_ECO81 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|26109714|gb|AAN81919.1|AE016766_7 Peptide chain release factor 2 [Escherichia coli CFT073] gi|13363235|dbj|BAB37186.1| peptide chain release factor RF-2 [Escherichia coli O157:H7 str. Sakai] gi|30042460|gb|AAP18184.1| peptide chain release factor RF-2 [Shigella flexneri 2a str. 2457T] gi|169753791|gb|ACA76490.1| hypothetical protein EcolC_0818 [Escherichia coli ATCC 8739] gi|170519896|gb|ACB18074.1| peptide chain release factor 2 [Escherichia coli SMS-3-5] gi|215266263|emb|CAS10692.1| peptide chain release factor RF-2 [Escherichia coli O127:H6 str. E2348/69] gi|218353218|emb|CAU99134.1| peptide chain release factor RF-2 [Escherichia coli 55989] gi|218357679|emb|CAQ90320.2| peptide chain release factor RF-2 [Escherichia fergusonii ATCC 35469] gi|218366653|emb|CAR04407.2| peptide chain release factor RF-2 [Escherichia coli S88] gi|218371586|emb|CAR19425.2| peptide chain release factor RF-2 [Escherichia coli IAI39] gi|218428580|emb|CAR09507.2| peptide chain release factor RF-2 [Escherichia coli ED1a] gi|218433494|emb|CAR14397.2| peptide chain release factor RF-2 [Escherichia coli UMN026] gi|253323312|gb|ACT27914.1| hypothetical protein ECBD_0846 [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974704|gb|ACT40375.1| peptide chain release factor 2 [Escherichia coli B str. REL606] gi|253978870|gb|ACT44540.1| peptide chain release factor 2 [Escherichia coli BL21(DE3)] gi|257755663|dbj|BAI27165.1| peptide chain release factor RF-2 [Escherichia coli O26:H11 str. 11368] gi|257760706|dbj|BAI32203.1| peptide chain release factor RF-2 [Escherichia coli O103:H2 str. 12009] gi|257765924|dbj|BAI37419.1| peptide chain release factor RF-2 [Escherichia coli O111:H- str. 11128] gi|309703251|emb|CBJ02586.1| peptide chain release factor 2 (RF-2) [Escherichia coli ETEC H10407] gi|313848742|emb|CAQ33203.2| peptide chain release factor RF2 [Escherichia coli BL21(DE3)] gi|323377221|gb|ADX49489.1| Peptide chain release factor 2 [Escherichia coli KO11] Length = 365 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|41408560|ref|NP_961396.1| peptide chain release factor 1 [Mycobacterium avium subsp. paratuberculosis K-10] gi|254774338|ref|ZP_05215854.1| peptide chain release factor 1 [Mycobacterium avium subsp. avium ATCC 25291] gi|61214644|sp|Q73X48|RF1_MYCPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|41396918|gb|AAS04779.1| PrfA [Mycobacterium avium subsp. paratuberculosis K-10] Length = 357 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 148/340 (43%), Positives = 202/340 (59%), Gaps = 17/340 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L A++E R+S+ + D K +A ++PI+ +++ + Sbjct: 4 PVQTIDVLLAEHADLERRLSDPDLHSNPDEARKAGRRFARLAPIVGTYRKLMAAREDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D +S EV +E + +L+ ++ +L P+D D +LE+++G G Sbjct: 64 ARELAADDDS-------FTAEVADLESRVAQLDTQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRM 176 G E+ALF DL RMY RYA W V VL +D GGYK+ +I GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLDEITSDLGGYKDATLSIRSKGDSADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVAEVQIDESDLRIDVFRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTG++V +E+SQ QN+ RA++VL ARL + ++ + E SA+R Sbjct: 237 GVNTTDSAVRITHLPTGVVVTCQNERSQLQNKARALQVLAARLQAMAEEQASAEASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 QI + DRSERIRTYNF + RITDHRI + L+ VL G Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGFKAHNLDQVLDG 336 >gi|308190290|ref|YP_003923221.1| peptide chain release factor 1 [Mycoplasma fermentans JER] gi|307625032|gb|ADN69337.1| peptide chain release factor 1 [Mycoplasma fermentans JER] Length = 371 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 228/353 (64%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+KN + + ++ + ++ Y K+++E I I + Y + + D + Sbjct: 22 LSDIKNTYDNLVKKLDDHEVINNIKEYTKISKEVNKIKDIAETFTKYLNLQNDYNDAKVM 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I N + + A+ + E ++ +LE E+ L+LPKD +DDK+ I+EIR GG EA Sbjct: 82 INSKNEEEVL--FAKSIIEENEVKLAQLEEELKILILPKDENDDKNVIMEIRGAAGGDEA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDLF+MY ++A +K++V+SSS GG+ +IV +I G +S++KFESGVHRV Sbjct: 140 NIFAGDLFKMYTKFAEDLNFKLKVISSSAASVGGFTQIVFSIKGDKAYSKLKFESGVHRV 199 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVP TE++GR+HTS ATV V+PE + D++I +D++IDT R+SG+GGQ VNTTDSAV Sbjct: 200 QRVPVTESAGRIHTSTATVTVMPEIDDSVDIEIKPQDLQIDTYRSSGAGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V+ E+SQ NR A+ VL+++LYD+E ++ E + RKL G GDRS Sbjct: 260 RITHLPTGIVVSSQDERSQIANRETALTVLKSKLYDLEIQKKQQEEAGYRKLA-GHGDRS 318 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ Q R+TDHRI + L+ V++G + II LLT Q + I + Sbjct: 319 EKIRTYNYPQDRVTDHRIGYSTS-LKQVMEGKLLTIIEALLTEEQNQKIKESG 370 >gi|54288338|gb|AAV31626.1| predicted protein chain release factor A [uncultured alpha proteobacterium EBAC2C11] Length = 335 Score = 235 bits (599), Expect = 8e-60, Method: Composition-based stats. Identities = 166/299 (55%), Positives = 216/299 (72%), Gaps = 1/299 (0%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 +L E + + PI +I + + + E D ++ + D+++ ++ Q E ++ Sbjct: 30 SELAQLARELSELRPICDQIELVRRIEAELADALLMVEEAGEDADMLEMVQAEAGLLKTR 89 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E + + +LLPKD DD ++ ILE+RAGTGG EAALF +LF MY+R+AA W EV Sbjct: 90 LPEAHSALQIMLLPKDKDDARNAILEVRAGTGGDEAALFASNLFSMYQRFAAKHGWNFEV 149 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ GGYKE ATISG VF+R+KFESGVHRVQRVP TEA GR+HTSAATVAVLPE Sbjct: 150 MEVSETGIGGYKEATATISGNDVFARLKFESGVHRVQRVPETEAGGRIHTSAATVAVLPE 209 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRLR 268 A ++D+ I D+R+D RASG GGQ VNTTDSAVRITH+PTGI+V+ + KSQH+NR + Sbjct: 210 AEDVDIRIDESDLRVDVFRASGPGGQSVNTTDSAVRITHLPTGIVVSQQDEKSQHKNRAK 269 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYK 327 AMK+LRAR+YD ER R+ +R+A RK Q+GSGDRSERIRTYNF QGR+TDHRIN TLYK Sbjct: 270 AMKILRARIYDAERARVEAQRAAERKGQVGSGDRSERIRTYNFPQGRVTDHRINFTLYK 328 >gi|33151768|ref|NP_873121.1| peptide chain release factor 2 [Haemophilus ducreyi 35000HP] gi|33147989|gb|AAP95510.1| peptide chain release factor 2 [Haemophilus ducreyi 35000HP] Length = 351 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E + + +++ I+ Q ++ + L + Sbjct: 14 DTKVERLEEVNAELEQPEIWNTPEKAQTLGKERSTLEMVVNTINALIQGIEDVEALIELA 73 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + K + + + + D C L+++AG+GG+EA Sbjct: 74 VEAEDEQTLYEAQIEADELATKLAK-----LEFQRMFSGPYDATDCYLDLQAGSGGTEAQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I+G F ++ E+G+HR+ Sbjct: 129 DWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSATIRITGEYAFGWLRTETGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V PE + D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 189 RKSPFDSNNRRHTSFAAAFVYPEVDDDVDIEINPADLRIDVYRASGAGGQHVNKTESAVR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V + +SQHQN+ + MK LRA+LY++E + E+ K IG G Sbjct: 249 ITHMPSGIVVQCQNGRSQHQNKDQCMKQLRAKLYEMEMMKKNAEKQAMEENKSDIGWG-- 306 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 307 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 349 >gi|13357561|ref|NP_077833.1| peptide chain release factor 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|170762199|ref|YP_001752083.1| peptide chain release factor 1 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171920085|ref|ZP_02690833.2| peptide chain release factor 1 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|183508605|ref|ZP_02689678.2| peptide chain release factor 1 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186701604|ref|ZP_02553446.2| peptide chain release factor 1 [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|13124459|sp|Q9PRE0|RF1_UREPA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|189039997|sp|B1AHY9|RF1_UREP2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|11277784|pir||D82945 translation releasing factor RF-1 UU003 [imported] - Ureaplasma urealyticum gi|6898949|gb|AAF30410.1|AE002100_3 peptide chain release factor 1 [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827776|gb|ACA33038.1| peptide chain release factor 1 [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902439|gb|EDT48728.1| peptide chain release factor 1 [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676062|gb|EDT87967.1| peptide chain release factor 1 [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700834|gb|EDU19116.1| peptide chain release factor 1 [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 359 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 155/362 (42%), Positives = 227/362 (62%), Gaps = 14/362 (3%) Query: 3 FLSHKQICDLKNRFA--------EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ 54 +K++ + R A E+E +++ ++ + + I + Y Q Sbjct: 1 MEYNKKLYEAIERVAIKNDALKKELETVVTD---FKKIKEINIQLKKTTKIAEAFAKYKQ 57 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 K ++ D E+ +LAQ+++ + I +EN++ +LLP D +DDK+ I+ Sbjct: 58 KLDTGIAAEKILN-TEKDLELIELAQMDLDEAKINIPIIENDLKIMLLPTDPNDDKNVIV 116 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 E+R GG E+++FVG+LF Y YA WK++++ + N G+ I ISG V+S Sbjct: 117 EMRPAAGGDESSIFVGNLFDTYRAYAENNNWKMKIIEMTPNAV-GFSFISFMISGEEVYS 175 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 RMKFESGVHRVQRVPATE+ GRVHTS TVAVLPE E+DV I ++RIDT RASG+GG Sbjct: 176 RMKFESGVHRVQRVPATESKGRVHTSTITVAVLPEQDEVDVVINPTELRIDTYRASGAGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN T+SAVRITHIPTG++ KSQ +NR AMK+LRA+L++ +++ E + R Sbjct: 236 QHVNRTESAVRITHIPTGVVAACQEGKSQIENRETAMKMLRAKLWEAAQEQQNAEFANLR 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 K Q+G+GDRSE+IRTYN+ Q R+TDHRINLTL KL+ ++ G +D+II+ L+ Q ++ Sbjct: 296 KNQVGTGDRSEKIRTYNYPQNRVTDHRINLTLNKLDQIMMGELDEIIDALIADEQTGLMA 355 Query: 354 SA 355 + Sbjct: 356 NL 357 >gi|319787302|ref|YP_004146777.1| hypothetical protein Psesu_1704 [Pseudoxanthomonas suwonensis 11-1] gi|317465814|gb|ADV27546.1| hypothetical protein Psesu_1704 [Pseudoxanthomonas suwonensis 11-1] Length = 375 Score = 235 bits (599), Expect = 9e-60, Method: Composition-based stats. Identities = 116/344 (33%), Positives = 171/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + D L E A + + I+ + + +L + Sbjct: 28 DAKKERLEEVNRELELPNVWDDPERAQALGRERALLEKTVGGIASVLEGLEGSTELLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E + +V EK I LE + D + ++I+AG GG+EA Sbjct: 88 -ESEQDEETAEAVVADVDRFEKHIEALEFQRM----FSGQMDGANAFVDIQAGAGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R WK E+L S D G K + G + +K E+GVHR+ Sbjct: 143 DWAEMLLRMYLRWCESRGWKTELLEVSGGDVAGIKSATFRVEGDFAYGWLKTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +V V PE +ID++I D++ D R+SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSDNRRHTSFTSVFVSPEVDDKIDIEINPADLKTDVYRSSGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+P+GI+V +E+SQH NR RAMK+L A+LY++E ++ E+ A K IG G Sbjct: 263 ITHVPSGIVVACQTERSQHANRDRAMKMLAAKLYELEIQKRNAEKDAVEATKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y Q RI D R + + VL G +D+ + L A Sbjct: 321 -SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKA 363 >gi|237745578|ref|ZP_04576058.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] gi|229376929|gb|EEO27020.1| peptide chain release factor 2 [Oxalobacter formigenes HOxBLS] Length = 349 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ + + + K L E ++ ++ +S + +L + Sbjct: 12 AAKSDKLEQVNAELEDPAVWNDPKKAQELGREKKSLENVVLSLSHIKSALTDAGELFEMA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D ++ + ++ + + + + + D +C ++I+AG GG+EA Sbjct: 72 KEEQDDETLKAVEADVSELQDRIEK-----LEFRRMFSNPMDPCNCFVDIQAGAGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + R Y RY + + +L SD + G K + G + ++ E+GVHR+ Sbjct: 127 DWASMILRQYLRYCERKGFNATILEQSDGEIAGIKTATIKVEGDYAYGYLRTETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS ++ V PE I++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 187 RKSPFDSANGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +++SQH+NR A ++L++RLY++E ++ E+ + K +G G Sbjct: 247 LTHIPTGIVVQCQNDRSQHRNRADAWEMLKSRLYELELRKRMAEQQKLEDSKTDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +DD I L Sbjct: 305 -HQIRSYVLDSSRIKDLRTSHETGNTKAVLDGDLDDFIIESLKQ 347 >gi|294155813|ref|YP_003560197.1| peptide chain release factor 1 [Mycoplasma crocodyli MP145] gi|291600475|gb|ADE19971.1| peptide chain release factor 1 [Mycoplasma crocodyli MP145] Length = 358 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 152/361 (42%), Positives = 231/361 (63%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +K + ++KN++ E++ +++ ++ Y K+ +E +I I+ + Y +Q Sbjct: 1 MEQTMYKSLTNIKNKYNEMQEMLNDPNVINDIKKYTKINKELNSIEEIVKCFNHYLNAEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ + D E+ +LA+IE+ E+ + +L E+ L+LPKD +DDK I+EIR Sbjct: 61 NFKSSKEMLSEK--DEEMVELAKIEITQSEEIMTKLTEELKILILPKDKNDDKDVIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLFRMY++++ K++VL + + GG+ I +I G +S++K Sbjct: 119 GAAGGDEANIFAGDLFRMYQKWSDQNDMKLKVLDENRAEAGGFTLITFSILGDKAYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQR+P TE GRVHTS ATV V+PE + ++++ EDIRID R+SG+GGQ Sbjct: 179 FESGVHRVQRIPVTETKGRVHTSTATVTVMPEIDDDIEIEVKSEDIRIDVFRSSGNGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH +GI+V KSQ QN+ AM++L+++LYD+E K+ E S RKL Sbjct: 239 VNTTDSAVRITHASSGIVVSCQEGKSQIQNKEIAMRILKSKLYDLELKKKEEEESGYRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 GSG RSE+IRTYN+ Q R+TDHRI+ + L V++G ++ II+ LL Q + + A Sbjct: 299 A-GSGFRSEKIRTYNYPQDRVTDHRISYSTS-LSPVMEGKLNSIIDALLAMEQDEKLKEA 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|148377997|ref|YP_001256873.1| peptide chain release factor 1 [Mycoplasma agalactiae PG2] gi|238686692|sp|A5IZH6|RF1_MYCAP RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|148292043|emb|CAL59435.1| Peptide chain release factor 1 [Mycoplasma agalactiae PG2] Length = 358 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 142/361 (39%), Positives = 225/361 (62%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M K + ++K + E+ ++ + + + + +E A I I K Y+ + Sbjct: 1 MEKTMFKSLSEIKQSYLELLKKIDDPEVISNIKEYSAINKEIAKIREISEKFITYENILK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ N + + A++ + ++ ELE ++ L+LP+D +DDK+ I+EIR Sbjct: 61 DVEQAKIMLESKNEEE--VEFAKMIIDENSLKLDELEEKLKILILPQDENDDKNIIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLFRMY ++A +++++LS++ GG+ +IV +I G +S+ K Sbjct: 119 GAAGGDEANIFAGDLFRMYSKFADELGFRLKILSTNSASAGGFSQIVFSIKGEKAYSKFK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTS TV V+PE + +++I D++ID R+SG+GGQ Sbjct: 179 FESGVHRVQRVPVTESQGRIHTSTTTVTVMPEIDDSVEIEIKPSDLKIDVFRSSGAGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PT I+V + E+SQ NR A+ +L+++LYD+E ++ A E S RKL Sbjct: 239 VNTTDSAVRITHLPTNIVVTSQDERSQIANRETALTILKSKLYDLEMQKKAEEESGYRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G GDRSE+IRTYN+ Q R+TDHRI+ + L+ +++G + II+ LL Q + I + Sbjct: 299 A-GHGDRSEKIRTYNYPQDRVTDHRISFSTS-LKPIMEGKLTPIIDALLAEEQNQKIKES 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|311740614|ref|ZP_07714441.1| peptide chain release factor RF1 [Corynebacterium pseudogenitalium ATCC 33035] gi|311304134|gb|EFQ80210.1| peptide chain release factor RF1 [Corynebacterium pseudogenitalium ATCC 33035] Length = 362 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 150/369 (40%), Positives = 216/369 (58%), Gaps = 20/369 (5%) Query: 1 MVFLSHKQI---CDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQ 54 M + Q+ D+ + + IE++M++ + KL++ YA + PII Q Sbjct: 1 MKKIMSNQVSLVDDIVSEYQGIEMQMADPEVAGDQKQFRKLSKRYAELRPIIMVNDELTQ 60 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 +++ D + + + E D +EK + LE ++ LL P+D D + I+ Sbjct: 61 AREDLADAKEMAYEDHDFQEEAD-------RLEKSVESLEEKLADLLAPRDEQDSEDIIM 113 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG--- 171 EI+AG GG EAALF GDL RMYERYA + EVL +++D GG K++ + + Sbjct: 114 EIKAGAGGEEAALFAGDLARMYERYADKTGFNWEVLGLNESDLGGVKDMTISFRSKSPSR 173 Query: 172 --VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMR 228 +S KFE GVHRVQRVP TE+ GR+ TSAA V V PE E++ +I +DIR+D R Sbjct: 174 DGAWSVFKFEGGVHRVQRVPVTESQGRIQTSAAGVLVYPEPEEVESVNIDDKDIRVDVYR 233 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG GGQ VNTTDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ Sbjct: 234 SSGKGGQGVNTTDSAVRITHLPTGLIVTCQKERSQIQNKARALQVLQARLDQMEREAREA 293 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 E R Q+ + DRSERIRTYN+ + RITDHRI L+ VL G ++D+I L Sbjct: 294 EAGEQRASQVRTMDRSERIRTYNWPENRITDHRIGYKANNLDSVLNGDMNDLIKALQDQE 353 Query: 348 QAKMIGSAS 356 +A+ + + Sbjct: 354 RAERLEAEG 362 >gi|292487146|ref|YP_003530016.1| peptide chain release factor 1 [Erwinia amylovora CFBP1430] gi|291552563|emb|CBA19608.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora CFBP1430] gi|312171251|emb|CBX79510.1| Peptide chain release factor 1 (RF-1) [Erwinia amylovora ATCC BAA-2158] Length = 332 Score = 235 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 172/337 (51%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + + D L +E +A+ ++ + Q ++ L + + + Sbjct: 2 QEVNAELEQPDVWNEPDRAQALGKERSALEAVVETLDQMTQGLEDVSGLLELAVEAEDED 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + +K + + + D C ++I+AG+GG+EA + L Sbjct: 62 TFNEAVAELDGLDKKLGE-----LEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + +K E++ SD + G K I G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWAEAKGFKTEIIEESDGEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 GR HTS ++V + PE ID++I D+RID RASG+GGQHVN T+SAVRITH+PT Sbjct: 177 GGRRHTSFSSVFIYPEVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTN 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +A K LRA+LY+ E ++ ++ + + K IG G +IR+Y Sbjct: 237 IVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQKKNADKQTAEDNKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R ++ + VL G +D I L A Sbjct: 294 VLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 330 >gi|238810252|dbj|BAH70042.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 373 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 152/353 (43%), Positives = 228/353 (64%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+KN + + ++ + ++ Y K+++E I I + Y + + D + Sbjct: 24 LSDIKNTYDNLVKKLDDHEVINNIKEYTKISKEVNKIKDIAETFTKYLNLQNDYNDAKVM 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I N + + A+ + E ++ +LE E+ L+LPKD +DDK+ I+EIR GG EA Sbjct: 84 INSKNEEEVL--FAKSIIEENEVKLAQLEEELKILILPKDENDDKNVIMEIRGAAGGDEA 141 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDLF+MY ++A +K++V+SSS GG+ +IV +I G +S++KFESGVHRV Sbjct: 142 NIFAGDLFKMYTKFAEDLNFKLKVISSSAASVGGFTQIVFSIKGDKAYSKLKFESGVHRV 201 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVP TE++GR+HTS ATV V+PE + D++I +D++IDT R+SG+GGQ VNTTDSAV Sbjct: 202 QRVPVTESAGRIHTSTATVTVMPEIDDSVDIEIKPQDLQIDTYRSSGAGGQSVNTTDSAV 261 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V+ E+SQ NR A+ VL+++LYD+E ++ E + RKL G GDRS Sbjct: 262 RITHLPTGIVVSSQDERSQIANRETALTVLKSKLYDLEIQKKQQEEAGYRKLA-GHGDRS 320 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ Q R+TDHRI + L+ V++G + II LLT Q + I + Sbjct: 321 EKIRTYNYPQDRVTDHRIGYSTS-LKQVMEGKLLTIIEALLTEEQNQKIKESG 372 >gi|86742401|ref|YP_482801.1| peptide chain release factor 1 [Frankia sp. CcI3] gi|119361540|sp|Q2J6M0|RF1_FRASC RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|86569263|gb|ABD13072.1| bacterial peptide chain release factor 1 (bRF-1) [Frankia sp. CcI3] Length = 357 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 150/342 (43%), Positives = 210/342 (61%), Gaps = 18/342 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L AEIE ++++ + K L+ YA ++P++ D+ + DL Sbjct: 5 LDGLIAEHAEIEGQLADPAVHNDPAKARALSRRYAQLAPVVDLARELDRVEG---DLAAA 61 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D RD Q + + L L+P D DD + ILE++AG GG E+ Sbjct: 62 RELALLDPSFRDEVQDLGEELARLNDRLRAY----LVPIDPDDARDAILEVKAGAGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY RYA R WK E+L ++ +D GGY+++ + G GV+ R++F Sbjct: 118 ALFAGDLLRMYLRYAERRGWKTEILDANPSDLGGYRDVSVAVKARGPAGPGDGVYGRLRF 177 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHRVQRVP TE++GR+HTSAA V VLPEA E+DV+I D+RID R+SG GGQ VN Sbjct: 178 EGGVHRVQRVPVTESAGRIHTSAAGVLVLPEAEEVDVEIDPNDLRIDVFRSSGPGGQSVN 237 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITHIPTG++V +EKSQ QN+ A+++LRARL R++ +E S R Q+ Sbjct: 238 TTDSAVRITHIPTGVVVSCQNEKSQLQNKESALRILRARLLGAAREKAESEASLARASQV 297 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 + DRSER+RTYNF++ RI+DHR+ + L+ VL G +D++ Sbjct: 298 RTVDRSERVRTYNFAENRISDHRVGYKAHNLDQVLDGELDEV 339 >gi|40062727|gb|AAR37632.1| peptide chain release factor 1, degenerate [uncultured marine bacterium 438] Length = 358 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 155/358 (43%), Positives = 236/358 (65%), Gaps = 4/358 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + K I DL ++ + +E +S + + ++EY+ ++ +I Y + E++D Sbjct: 1 MIPLKTIEDLISKHSILEKELSSGEVDKKLFAEKSKEYSDLNEVIDDARKYFSYEGEKKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ D +SD+E +++A++E+ ++ E +E ++ LLPKD D K+ I+EIRAGTG Sbjct: 61 LEKILSDSSSDNEFKEMAEVELKDLKLENETIEKKLKLFLLPKDEADKKNAIIEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA+LF DLF+MYE+ + +KW++E++S S ++ GG KE++A+I G+ ++S +K+ESG Sbjct: 121 GLEASLFAADLFKMYEKVSHQKKWELELISMSQSEAGGLKEVIASIRGKNIYSTLKYESG 180 Query: 182 VHRVQRVPATEASGRVHTSAAT-VAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 + S T AVLPEA E+D+ I D+RID RA G GGQ VNTT Sbjct: 181 SSSCSKSSRYRNSREEFTLLQQQWAVLPEAEEVDIKINDSDLRIDVFRAGGPGGQSVNTT 240 Query: 241 DSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITHIPTG+ V+ +KSQH+N+ + M +LR+RLY++ER R+ ERS +RK +IG+ Sbjct: 241 DSAVRITHIPTGLSVSQQDQKSQHKNKAKGMLILRSRLYELERSRIEGERSEDRKSKIGT 300 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GDRSERIRTYNF QGR+TDHRINLTL+KLE L+G D+++ L Q + + + + Sbjct: 301 GDRSERIRTYNFPQGRVTDHRINLTLHKLEAFLEGEAFDEMVESLTLQAQEEKLSNLN 358 >gi|237785868|ref|YP_002906573.1| peptide chain release factor 1 [Corynebacterium kroppenstedtii DSM 44385] gi|259585217|sp|C4LJM5|RF1_CORK4 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|237758780|gb|ACR18030.1| peptide chain release factor RF-1 [Corynebacterium kroppenstedtii DSM 44385] Length = 357 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 139/356 (39%), Positives = 210/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + +E ++++ + K+ + ++ + PII + + + + Sbjct: 8 VDDIVSEYQGLEAQLADPDLHNDAARARKVGKRFSELQPIIQTNDRLNAVTDDLEAAEEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E A+ E+ +L + LL P+D D ++E+++G GG EA Sbjct: 68 AHE---DQEFAAEAERLREEKEELSDKLAD----LLAPRDPHDGDDIVMEVKSGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + ++VL + D GG K+I +I + +S KFE Sbjct: 121 ALFAGELVRMYQRYADKHGFAIDVLDDAPTDLGGIKDITMSIRSKKPSRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE EI+ +I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEIEDVEIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RAM+VL ARL ++ + SA+R Q+ Sbjct: 241 TDSAVRITHLPTGLIVTCQKERSQIQNKARAMQVLAARLQQMKEEEAEAAASADRAAQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RI+DHRIN + L+ VL G +DD+ + L +A +A+ + + Sbjct: 301 TMDRSERIRTYNFPENRISDHRINYKAHNLDQVLDGDLDDLFSALQSAERAERLEA 356 >gi|242069313|ref|XP_002449933.1| hypothetical protein SORBIDRAFT_05g025920 [Sorghum bicolor] gi|241935776|gb|EES08921.1| hypothetical protein SORBIDRAFT_05g025920 [Sorghum bicolor] Length = 412 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 220/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +R+++ V Y KL + + + +++ + +++ ++ Sbjct: 53 KLDSAEKAWKEMSVRLADPDIVSDPSEYQKLAQSVSELDQVVTTYRQFKDCERQLEETKA 112 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ D ++ ++ E+ A+ ++ ELE ++ LLLP D D ++ +LE+RAG GG E Sbjct: 113 LEKENEDDPDMSEMITSELEALSNQLAELEEKLKLLLLPSDPLDSRNILLEVRAGAGGDE 172 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++Y WK + +S S+ D GGYK V + G+ V+S++KFESGVHR Sbjct: 173 AGIWAGDLVRMYQKYCERNNWKFKPVSCSEADMGGYKTYVMEVKGKQVYSKLKFESGVHR 232 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E+DV I +DI + T R+ G+GGQ+VN ++AV Sbjct: 233 VQRVPLTETMGRVHTSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAV 292 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QN+ RA ++LRA+LY+++ + RK+Q+G+G RS Sbjct: 293 DLIHKPTGIRIFCTEERSQLQNKERAFQLLRAKLYEIKLREQQESIRNQRKMQVGTGARS 352 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+ + Y+L L G I+ + T Q +++ + Sbjct: 353 EKIRTYNYKDNRVTDHRLKMN-YELTGFLLGDIESAVQSCATLEQQELLEEMA 404 >gi|145348023|ref|XP_001418457.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578686|gb|ABO96750.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 373 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 161/356 (45%), Positives = 231/356 (64%), Gaps = 6/356 (1%) Query: 6 HKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ R E+ +S +D ++ +E + I PI + + + + E+ L Sbjct: 18 EERGEAALRRREELIALISRQGVDIDRVVEANKELSRIEPIAEQYEVVKKLRAEKASLEE 77 Query: 65 VIGDHN---SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D + E+ +LA+ E+ A++ ++ + E + L LP D DD+ ILE+RAG G Sbjct: 78 LVRDASSGGDSKELAELAREELRAVDIDLPDQELALQLLFLPHDDADDRGAILEVRAGAG 137 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF +LFRMY +A W+ + L+ S+ D G +E A I G+GVF R+KFESG Sbjct: 138 GDEAALFAAELFRMYALHARKSGWRFDTLNVSETDGKGVREASAEILGKGVFGRLKFESG 197 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE GRVHTS A++AVLP A E+++DI ED+RIDTMRASG+GGQHVNTT+ Sbjct: 198 VHRVQRVPETETQGRVHTSTASIAVLPHAEEVEMDIKEEDVRIDTMRASGAGGQHVNTTN 257 Query: 242 SAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG +V E+SQH+N+ +A VL+ARLYD+ER++MA ERS R IG+G Sbjct: 258 SAVRLTHAPTGIQVVIQDERSQHKNKAKAFSVLKARLYDLEREKMAKERSELRSSLIGTG 317 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF+QGR+ DHR+ T+ + ++ G+ +D+I L +++ A Sbjct: 318 DRSERIRTYNFAQGRVKDHRVEGTISDVNALMDGFLLDEITEKLKRKRVEELLAGA 373 >gi|93005664|ref|YP_580101.1| peptide chain release factor 2 [Psychrobacter cryohalolentis K5] gi|92393342|gb|ABE74617.1| bacterial peptide chain release factor 2 (bRF-2) [Psychrobacter cryohalolentis K5] Length = 349 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ L + + K+ +E + + +I + + ++ + + Sbjct: 12 DGKQERLEEVNLELENPELWNDPERATKINKEKSQLDGVIDVVVSLETTLEDASAMLELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + +S + D+ A + ++ + + D +C L+I++G+GG+EA Sbjct: 72 VEAEDESLLADVQ-----AELDNAEKRVADLEFRRMFSGEMDPNNCYLDIQSGSGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +KVEV+ S G K I G F ++ E GVHR+ Sbjct: 127 DWAEMLLRMYTRWAEAHGFKVEVIEVSSGSVAGIKSATIEIKGNYAFGWLRTEIGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS A V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 187 RKSPFDSNNGRHTSFAAVFVSPEIDDNIEIDINPADLRIDTYRSSGAGGQHVNTTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH P+G++V +E+SQH N+ AMK+LRA+LY++E ++ + A K +G G Sbjct: 247 ITHEPSGVVVTCQNERSQHGNKATAMKMLRAKLYELEMQKRMESQQAVEDGKSDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 305 -SQIRSYVLDDSRIKDLRTGVETFNTGAVLDGDLDQFIEASLKA 347 >gi|296136248|ref|YP_003643490.1| hypothetical protein Tint_1790 [Thiomonas intermedia K12] gi|295796370|gb|ADG31160.1| conserved hypothetical protein [Thiomonas intermedia K12] Length = 367 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 175/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + + + +L E ++ ++ + + +L + Sbjct: 30 DAKASRLMEVAGALEDPQVWNDPKRAQELGRERKSLETVVLGLESLTTALADHSELFEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+ + + + + + + + D +C ++I+AG GG+EA Sbjct: 90 REEGDDATCEAIEADVEKSAAEVEA-----LEFRRMFSNPLDPSNCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EV+ ++ D G + + G + +++ E+GVHR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKTEVMEETEGDVAGIRSATIKVEGDYAYGQLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE + ++DI D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASVFVYPEVDDSIEIDINPADVRTDTFRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH+PTGI+V +++SQH+NR A ++LR+RLY+ E ++ E+ + K +G G Sbjct: 265 LTHMPTGIVVQCQNDRSQHKNRAEAWQMLRSRLYEHEMRKRMAEQQTLESTKSDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R N+ + + VL G +D+ I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDEFITASLK 364 >gi|260223373|emb|CBA33874.1| Peptide chain release factor 2 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 342 Score = 234 bits (597), Expect = 1e-59, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 168/344 (48%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L +E + ++ ++ + +L+ + Sbjct: 5 DAKAERLRTVNASLEDPSVWNDPKKAQELGKEKKMLDGVVVTLNDLTSNLSDNTELYEMS 64 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D E + E + + + LE + + + D C L+I+AG GG+EA Sbjct: 65 KEE-GDEESLLTIETETAKLTEIVEGLE----FRRMFNNPADPLPCFLDIQAGAGGTEAC 119 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + + V +D D G K I G F ++ E+GVHR+ Sbjct: 120 DWASMLLRQYLKYAERKGFTANVEDLTDGDTAGIKSATIKIDGEYAFGHLRTETGVHRLV 179 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE + ++DI D+R DT RASG+GGQH+N TDSAVR Sbjct: 180 RKSPFDSSGGRHTSFASVFVYPEIDDSIEIDINPADVRTDTFRASGAGGQHINKTDSAVR 239 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A K LR+RLYD E ++ E+ + K +G G Sbjct: 240 LTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYDFELRKRQEEQQKLEDTKTDVGWG-- 297 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 298 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIQASLKQ 340 >gi|308048394|ref|YP_003911960.1| bacterial peptide chain release factor 2 (bRF-2) [Ferrimonas balearica DSM 9799] gi|307630584|gb|ADN74886.1| bacterial peptide chain release factor 2 (bRF-2) [Ferrimonas balearica DSM 9799] Length = 365 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 179/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + + +L E + + ++ I+ DQ ++ ++L + Sbjct: 28 DAKQERLEEVNAELEQPDVWNEPERAQELGRERSNLEAVVKTINDLDQGLEDVRELLDLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 E + + E A + + ++ + + D L+++AG+GG+EA Sbjct: 88 V-----EEQDEESFEEAKAELEGLEAQLEKLEFRRMFSGAQDANDAYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ S+ + G K ISG F ++ E+GVHR+ Sbjct: 143 DWCNILLRMYLRWAEAKGFKAEIIEVSEGEVAGLKSATVKISGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE ID++I D+RID RASG+GGQHVNTT+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDNIDIEINPADLRIDVYRASGAGGQHVNTTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +E+SQH+N+ +AMK L+A+L+++E ++ E+ + + K IG G Sbjct: 263 ITHMPTNTVVQCQNERSQHKNKDQAMKQLKAKLFELEMQKQNAEKQAAEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDRFIEASLK 362 >gi|118464752|ref|YP_880755.1| peptide chain release factor 1 [Mycobacterium avium 104] gi|166223570|sp|A0QCW7|RF1_MYCA1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118166039|gb|ABK66936.1| peptide chain release factor 1 [Mycobacterium avium 104] Length = 357 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 148/340 (43%), Positives = 203/340 (59%), Gaps = 17/340 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L A++E R+S+ + D K +A ++PI+ +++ + Sbjct: 4 PVQTIDVLLAEHADLERRLSDPDLHSNPDEARKAGRRFARLAPIVGTYRKLMAAREDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D +S EV +E + +L+ ++ +L P+D+ D +LE+++G G Sbjct: 64 ARELAADDDS-------FTAEVADLESRVAQLDTQLTDMLAPRDSHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRM 176 G E+ALF DL RMY RYA W V VL +D GGYK+ +I GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLDEITSDLGGYKDATLSIRSKGDSADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVAEVQIDESDLRIDVFRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTG++V +E+SQ QN+ RA++VL ARL + ++ + E SA+R Sbjct: 237 GVNTTDSAVRITHLPTGVVVTCQNERSQLQNKARALQVLAARLQAMAEEQASAEASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 QI + DRSERIRTYNF + RITDHRI + L+ VL G Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGFKAHNLDQVLDG 336 >gi|148243244|ref|YP_001228401.1| peptide chain release factor 1 [Synechococcus sp. RCC307] gi|166223614|sp|A5GVY9|RF1_SYNR3 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|147851554|emb|CAK29048.1| Peptide chain release factor 1 [Synechococcus sp. RCC307] Length = 364 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 147/354 (41%), Positives = 217/354 (61%), Gaps = 5/354 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ F +E ++++ +L +E + + P++ Q E Q Sbjct: 8 ERLEATCRTFNALERQLADPSVAADPEQLLTLAKERSRLEPLVLDYQRLQQLHAEHQQAQ 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ LAQ E+ + E +L + LLP D D++S +LEIRAG GG Sbjct: 68 QLLKESKGDAELEALAQEELQQLSSEQEQLNQRLKVALLPSDPRDERSVMLEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA L+ GDL RMYER+A W+V +S+S+ + GG+KE++ I G VFS++K+E+GVH Sbjct: 128 EACLWAGDLARMYERHAQTCGWQVNPVSASEAELGGFKELILAIRGDAVFSQLKYEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATE+ GRVHTS ATVAV+PEA +DV I +D+ I T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATESQGRVHTSTATVAVMPEADPVDVQIDPKDLDISTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QNR RAM++LRA+L E + A S+ R+ Q+GSGDR Sbjct: 248 VDLLHKPTGIRVFCTQERSQLQNRERAMEILRAKLLAKEEEEAAAAESSARRAQVGSGDR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SE+IRTYN+ R TDHR+ + LE VL G + D+I A Q + + + Sbjct: 308 SEKIRTYNYKDNRTTDHRLG-KNFPLETVLNGQLSDLIEACTHADQQQKLEELA 360 >gi|226314892|ref|YP_002774788.1| peptide chain release factor 2 [Brevibacillus brevis NBRC 100599] gi|226097842|dbj|BAH46284.1| peptide chain release factor 2 [Brevibacillus brevis NBRC 100599] Length = 370 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 183/360 (50%), Gaps = 19/360 (5%) Query: 2 VFLSHKQICDL---------KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY 52 + K++ D+ + R E+E RM D + + ++ I S + Sbjct: 13 MSSMAKRLADIRGSLDLPVKQERIGELEERMLAPDFWDDNDAAQKTISELNAIKSLVETM 72 Query: 53 DQKKQEEQDLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + + +DL ++ DS + + K E LL D D Sbjct: 73 AKLDSQYEDLQVMLELVIEEGDSSLIPDLYDSTQELRKSFESFEL----ELLLSDEYDKN 128 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 + ILE+ G GG+E+ + L RMY R+ + +KVE L D+ G K + I G Sbjct: 129 NAILELHPGAGGTESQDWASMLLRMYTRWGDAKGFKVETLDYLPGDEAGVKSVTLLIKGY 188 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRA 229 + +K E GVHR+ R+ +ASGR HTS + VLPE + + VDI ED+++DT R+ Sbjct: 189 NAYGYLKSEKGVHRLVRISPFDASGRRHTSFVSCNVLPEIEDDNVVDIRTEDLKVDTYRS 248 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG+GGQH+NTTDSAVRITH+P+GI+V +E+SQ +NR RAMK+L ARL++ +R+ Sbjct: 249 SGAGGQHINTTDSAVRITHLPSGIVVTCQTERSQIKNRERAMKMLTARLFEKKREEQEKT 308 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +A + Q +IR+Y F + DHR N+ + ++ V+ G ID I+ L A Sbjct: 309 LAAIQGEQ-KDIAWGSQIRSYVFHPYSLVKDHRTNMEVGNVQAVMDGEIDSFIDAYLRAQ 367 >gi|71153099|sp|Q7VNG1|RF2_HAEDU RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 365 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + L +E + + +++ I+ Q ++ + L + Sbjct: 28 DTKVERLEEVNAELEQPEIWNTPEKAQTLGKERSTLEMVVNTINALIQGIEDVEALIELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + K + + + + D C L+++AG+GG+EA Sbjct: 88 VEAEDEQTLYEAQIEADELATKLAK-----LEFQRMFSGPYDATDCYLDLQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD D G K I+G F ++ E+G+HR+ Sbjct: 143 DWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSATIRITGEYAFGWLRTETGIHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A V PE + D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSNNRRHTSFAAAFVYPEVDDDVDIEINPADLRIDVYRASGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V + +SQHQN+ + MK LRA+LY++E + E+ K IG G Sbjct: 263 ITHMPSGIVVQCQNGRSQHQNKDQCMKQLRAKLYEMEMMKKNAEKQAMEENKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 363 >gi|15803427|ref|NP_289460.1| peptide chain release factor 2 [Escherichia coli O157:H7 EDL933] gi|12517417|gb|AAG58019.1|AE005519_5 peptide chain release factor RF-2 [Escherichia coli O157:H7 str. EDL933] Length = 365 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSXSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|37523990|ref|NP_927367.1| peptide chain release factor 1 [Gloeobacter violaceus PCC 7421] gi|46576716|sp|Q7ND15|RF1_GLOVI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|35214996|dbj|BAC92362.1| translation releasing factor RF-1 [Gloeobacter violaceus PCC 7421] Length = 364 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 146/357 (40%), Positives = 224/357 (62%), Gaps = 6/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEE---YAAISPIISKISIYDQKKQEEQ 60 L +++ D++ + ++ R+ + ++ A + + + + E Sbjct: 6 LMVQKLNDIERTYNDLTTRLGDPSLASNPQEMLRIVRMRAGLERTVEAYDHWQRLCAERN 65 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + +I D D E+R+LA+ E +E+ I LE+EI LLLP+D +DDK+ +LEIRAGT Sbjct: 66 AVRQMIRDE-QDPELRELAEEEHTGLEERIARLEDEITLLLLPRDPNDDKNVMLEIRAGT 124 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+F GDL RMY RYA + W V++ S S + GG+KE++ I G V+S++KFE+ Sbjct: 125 GGDEAAIFAGDLMRMYIRYAEGQGWSVKLASESPAEMGGFKEVILEIRGESVYSKLKFEA 184 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE GRVHTS ATVA++PE E+DV+I DI I T R+ G+GGQ+VN Sbjct: 185 GVHRVQRVPVTETQGRVHTSTATVAIMPEVEEVDVEINPNDIEITTTRSGGAGGQNVNKV 244 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H P+GI + E+SQ QN+ RAM++LR +LYD++++ + S R+ Q+G+ Sbjct: 245 ETAVHLVHKPSGIHIHCQEERSQLQNKARAMQILRVKLYDIKQREQHEQVSGLRRSQVGT 304 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 GDRSE+IRTYN+ R+TDHR++ L ++G I+ +I + A Q + + + Sbjct: 305 GDRSEKIRTYNYKDNRVTDHRLSQNFT-LNTAIEGEIETLIQSAIAAAQREQLAELA 360 >gi|284008432|emb|CBA74885.1| peptide chain release factor 2 [Arsenophonus nasoniae] Length = 332 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 174/337 (51%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + + + L +E +++ I+ I Q + L + + + + Sbjct: 2 EEVNAELEQPDVWNEPERAQALGKERSSLEAIVETIDALIQGLDDVSGLLDLAIEADDED 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + A ++ ++ + + D +C L+++AG+GG+EA + L Sbjct: 62 TFHEAV-----AELAQLEGKLGQLEFRRMFSGQYDSANCYLDLQAGSGGTEAQDWASMLM 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + +K E++ +SD D G K I G + ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWAESKGFKTEIIEASDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 GR HTS ++ + PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPTG Sbjct: 177 GGRRHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTY 309 I+ +++SQH+N+ +A K L+A+LY++E ++ ++ K IG G +IR+Y Sbjct: 237 IVTQCQNDRSQHKNKDQAFKQLKAKLYELEMQKKNADKQALEENKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D I L A Sbjct: 294 VLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLKA 330 >gi|312109506|ref|YP_003987822.1| peptide chain release factor 2 [Geobacillus sp. Y4.1MC1] gi|311214607|gb|ADP73211.1| Peptide chain release factor 2 [Geobacillus sp. Y4.1MC1] Length = 367 Score = 234 bits (596), Expect = 2e-59, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 180/346 (52%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + R E+E +M+E D + ++ + +++ + + + Sbjct: 26 DLEAKQARIRELEEQMAEPDFWDDQKAAQTVINEANALKDLVGEFQSLEERFENLEVTYE 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + + ++L + LL + D + ILE+ G GG+E Sbjct: 86 LIKEEPDEDLQQELVTEAKRLTKDFSE-----FELQLLLNEPYDKNNAILELHPGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE L ++ G K + I G + +K E GVHR Sbjct: 141 SQDWASMLLRMYTRWAEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +ASGR HTS + V+PE + +++I E+IRIDT R+SG+GGQHVNTTDSA Sbjct: 201 LVRISPFDASGRRHTSFVSCEVIPEMDDDIEIEIRPEEIRIDTYRSSGAGGQHVNTTDSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITHIPTGI+V SE+SQ +NR +A+ +L+A+LY + + E + R Q IG G Sbjct: 261 VRITHIPTGIVVTCQSERSQIKNREKALNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWG 320 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F + DHR N+ + ++ V+ G ID I+ L Sbjct: 321 N---QIRSYVFHPYSLVKDHRTNVEVGNVQAVMDGEIDIFIDAYLR 363 >gi|314927458|gb|EFS91289.1| peptide chain release factor 1 [Propionibacterium acnes HL044PA1] Length = 388 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + I +++ R EIE++++ + +L + +A + ++S DQ Sbjct: 28 MSESAQHAIDEIRRRLREIEIQLANPAVLSDPSAMGRLGKRHARLRHVVSVADNVDQLNA 87 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + +++ ++ E LL P D D + ++EI Sbjct: 88 DIEAAEDLANE--DPVFVQEAERLRGQLDLARTELTE-----LLAPSDPLDQEDALVEIH 140 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 141 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSELTDLGGYRTVVVAVGGVPSRPAYG 200 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI DIR+D R+SG GG Sbjct: 201 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPADIRVDVYRSSGPGG 260 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 261 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 320 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + ++++ L + + Sbjct: 321 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGEVLDALHADEVRRRMA 380 Query: 354 SASE 357 SE Sbjct: 381 QQSE 384 >gi|219119372|ref|XP_002180448.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217407921|gb|EEC47856.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 358 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 137/354 (38%), Positives = 222/354 (62%), Gaps = 5/354 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + + R+++ ++ ++ + + I ++ Y ++E Sbjct: 4 RLDGIRRSYQALTERLADPDVINDSNLLRQVMTDRSQIEEVVMVFEEYVALQEELSGAKE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D +++++A+ E+ AIE ++ LE +I LLLPKD +D ++ +LEIRAGTGGSE Sbjct: 64 LFQDAGDDPDMKEMARDEMKAIEPQLDSLEEKIKVLLLPKDPNDARNVMLEIRAGTGGSE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +F GDL +Y +Y + + W+ ++ SS DDGGYK +V I G V+S++K+E+GVHR Sbjct: 124 ANIFAGDLLDVYRKYISTQGWQSNLIDSSSGDDGGYKNVVLDIKGDMVYSKLKWEAGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GRVHTS ATVA++PE E+D+ I ++I + TMR+ G+GGQ+VN ++AV Sbjct: 184 VQRVPATESQGRVHTSTATVAIMPECDEVDIKIDPKEIEMSTMRSGGAGGQNVNKVETAV 243 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ +N+ AMK+L A+LYD+E ++ E A R Q+G+G RS Sbjct: 244 DLLHKPTGIRIKCTQERSQLKNKELAMKMLMAKLYDMENEKREMEERARRGSQVGTGGRS 303 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R +DHR+ + L L G I + + ++ Q + + SE Sbjct: 304 EKIRTYNWKDSRCSDHRLG-QNFPLAQFLSGDIGSMHDSMIAKDQEERLKGLSE 356 >gi|329945388|ref|ZP_08293151.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 170 str. F0386] gi|328529010|gb|EGF55941.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 170 str. F0386] Length = 364 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 145/359 (40%), Positives = 202/359 (56%), Gaps = 18/359 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 L +A+IE M+ + D +L YA + +++ + + D + Sbjct: 9 EPLLAEYADIEAEMAGPAAADPGAMRRLGRRYAELGRVVAAYRAWQSASTDLADARELAA 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + A L +L+P+D DD + I+E++AG GG E+AL Sbjct: 69 E---DEDFAAEVPTLEAAEAAAGEHL----REVLVPRDPDDARDVIIEVKAGEGGEESAL 121 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFES 180 F DL RMY RYA + W VEVL ++D+D GGYK++ I GV++ +K+E Sbjct: 122 FASDLARMYSRYAERQGWAVEVLDATDSDLGGYKDVRLAIKTRGPVEPQNGVWAHLKYEG 181 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V V+PEA + I D+RID R+SG GGQ VNT Sbjct: 182 GVHRVQRVPVTESQGRIHTSAAGVLVMPEADDPGELQIDAADLRIDVFRSSGPGGQSVNT 241 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V+ +EKSQ QN+ AM+VLRARL +A E + R+ Q+ Sbjct: 242 TDSAVRITHLPTGIVVSMQNEKSQLQNKEAAMRVLRARLLAERAAAVAAEAAQARRSQVR 301 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF + RI DHR Y L+ VL G + +I + +A+ + E Sbjct: 302 TVDRSERIRTYNFPENRIADHRTGFKAYNLDAVLDGDLGPVIASAIAMDEAERLSQVGE 360 >gi|304317582|ref|YP_003852727.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779084|gb|ADL69643.1| hypothetical protein Tthe_2166 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 365 Score = 233 bits (595), Expect = 2e-59, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 182/350 (52%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 + I LK AEI+ +M+E + K L+++ + +IS+ ++ ++ Sbjct: 19 MGASLDIEGLKREVAEIDKKMAEPDFWNDLQKSQELSKKLKDLKELISEYESIEKLCEDL 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + + +S +++ + +K L D + IL I AG Sbjct: 79 NALIELGIEEGDESLSQEVHEEYKSLSKKINDM-----KIKTLLSGPYDRNNAILSIHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EA + L RMY R+A+ + ++VE + DD G K + + G + +K E Sbjct: 134 AGGTEAQDWTEMLLRMYMRWASSKNYEVETVDYLPGDDAGVKSVTIMVKGAFAYGYLKGE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ +A+GR HTS A V VLPE + VDI ED++IDT R+SG+GGQHVN Sbjct: 194 AGVHRLVRISPFDAAGRRHTSFALVEVLPEIDDDIKVDIRPEDLKIDTYRSSGAGGQHVN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SA+RITHIPTGI+V SE+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 254 KTESAIRITHIPTGIIVQCQSERSQMQNRETAMKMLKAKLMDLMIKEQKEKIEDL-KGEH 312 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + + V+ G ID+ IN L Sbjct: 313 KEAGWGNQIRSYVFQPYTLVKDHRTNFEVGNVNAVMDGDIDEFINAYLKQ 362 >gi|283788451|ref|YP_003368316.1| peptide chain release factor 2 (RF-2) [Citrobacter rodentium ICC168] gi|282951905|emb|CBG91623.1| peptide chain release factor 2 (RF-2) [Citrobacter rodentium ICC168] Length = 365 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 179/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAIVDTLDQMAQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAVAELDM-----LEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ Sbjct: 143 DWASMLERMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKISGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|148260023|ref|YP_001234150.1| peptide chain release factor 1 [Acidiphilium cryptum JF-5] gi|166223523|sp|A5FX99|RF1_ACICJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|146401704|gb|ABQ30231.1| bacterial peptide chain release factor 1 (bRF-1) [Acidiphilium cryptum JF-5] Length = 352 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 168/347 (48%), Positives = 233/347 (67%), Gaps = 5/347 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +++ + R E+ ++ + ++ + E A I P+ +I + ++ Sbjct: 1 MTLEQKLDRIVLRAEELRAMLAAGVDGERFVAASRELAEIEPVEQQILLLRAAERA---- 56 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +D E+R+LA E+ ++ + + LE+EI LLP+D D++ ILEIR GG Sbjct: 57 RDEAEAARADPELRELADAELDSLRETLPRLEHEIRLALLPRDAADERPAILEIRPAAGG 116 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EAALF +LF Y RYA LR W+ E+L ++ + GG +E +A I+GR VF+R+KFESGV Sbjct: 117 DEAALFAAELFAAYRRYADLRGWRFEILDYTETELGGLREGIAEITGRAVFARLKFESGV 176 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVPATE GR+HTS TVAVLPEA ++DV++ D+RID RASG+GGQHVN T+S Sbjct: 177 HRVQRVPATETQGRIHTSTVTVAVLPEAEDVDVEVNEADLRIDVFRASGAGGQHVNKTES 236 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+V E+SQH+NR +AMK+LRARLY+ R A R+A+RK Q+G+GD Sbjct: 237 AVRITHLPTGIVVAMQEERSQHKNRAKAMKILRARLYEQTRAAAAAGRAADRKSQVGTGD 296 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 RSERIRTYNF QGR+TDHRINLTL+K++ V+ G D+II+ L Q Sbjct: 297 RSERIRTYNFPQGRVTDHRINLTLHKIDRVMLGEFDEIIDALTEEDQ 343 >gi|90413184|ref|ZP_01221180.1| putative peptide chain release factor 2 [Photobacterium profundum 3TCK] gi|90325875|gb|EAS42327.1| putative peptide chain release factor 2 [Photobacterium profundum 3TCK] Length = 353 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + E+ + + + L + AA+ ++ I D ++ L + Sbjct: 16 DAKKEQLEEVNAELEQPAVWNEPERAQALGKSRAALEAVVETIDQLDLGVEDVAGLLELA 75 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ E+ ++ + + D C ++++AG+GG+EA Sbjct: 76 VEEDDQETFDEIEPE-----LAELEAKLAKLEFRRMFSGEYDSSDCYIDLQAGSGGTEAQ 130 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K E++ S D G K + G + ++ E+GVHR+ Sbjct: 131 DWTSMMLRMYLRWADAKGFKTEIIEVSAGDVAGLKSATIRLVGEYAYGWLRTETGVHRLV 190 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 191 RKSPFDSGGRRHTSFASAFVYPEIDDNIVIDINPSDLRIDVYRASGAGGQHVNTTESAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+L++ E ++ E+ + K IG G Sbjct: 251 ITHVPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEFEMQKQNAEKQANEDSKSDIGWG-- 308 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 309 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 350 >gi|887841|gb|AAA83072.1| peptide chain release factor 2 (RF-2) [Escherichia coli] Length = 365 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ ++ + Q ++ L + Sbjct: 28 DAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A + E ++ + + D C L+I+AG+GG+EA Sbjct: 88 VEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR Sbjct: 143 DWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRXV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++ V PE +ID++I D+RID R SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRTSGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ +++SQH+N+ + MK ++A+LY++E ++ E+ + K IG G Sbjct: 263 ITHIPTGIVTQCQNDRSQHKNKDQXMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 363 >gi|38233635|ref|NP_939402.1| peptide chain release factor 1 [Corynebacterium diphtheriae NCTC 13129] gi|81564890|sp|Q6NHU0|RF1_CORDI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|38199895|emb|CAE49561.1| peptide chain release factor 1 (RF-1) [Corynebacterium diphtheriae] Length = 356 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 143/362 (39%), Positives = 215/362 (59%), Gaps = 17/362 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + D+ + + IE +MS+ ++ + KL++ Y+ + PII+ + Q + + Sbjct: 1 MSQVSAVDDIVSEYQGIEAQMSDPETMGDQTLFRKLSKRYSELQPIINVNNKLVQARDDH 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + + + E+++ LE ++ LL P+D D ++E++AG Sbjct: 61 EAAEEMAYEDKEFAAEAERLAEEIVS-------LEEQLADLLAPRDPHDGDDIVMEVKAG 113 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFS 174 GG EAALF G+L RMY+RYA + VEVL S++D GG K++ +I + +S Sbjct: 114 AGGEEAALFAGELVRMYQRYAEKHGFTVEVLGLSESDLGGVKDMTLSIRSKTPSRDGAWS 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSG 233 KFE GVHRVQRVP TE+ GR+ TSAA V V PE E +V+I +D+R+D R+SG G Sbjct: 174 VFKFEGGVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVAEVEIDDKDLRVDVYRSSGKG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTG++V E+SQ QN+ RAM+VL ARL + ++ E + Sbjct: 234 GQGVNTTDSAVRITHLPTGLVVTCQKERSQIQNKARAMQVLAARLQAMAEEQAEAEAAEG 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R QI + DRSERIRTYN+ + RI+DHRI L+ VL G +DD+ + L A +A+ + Sbjct: 294 RAAQIRTMDRSERIRTYNWPENRISDHRIGYKANNLDSVLNGDLDDLFSALQAAERAERL 353 Query: 353 GS 354 + Sbjct: 354 EA 355 >gi|227510661|ref|ZP_03940710.1| peptide chain release factor 2 [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227190313|gb|EEI70380.1| peptide chain release factor 2 [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 354 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 178/352 (50%), Gaps = 10/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L + E +M+E D + + + +K +D E Sbjct: 1 MALGGLFDFDALSESISINEAKMAEPGFWDDQQAAQKLIDETNQLKTKRDRFDTLTNELD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + + D + Q E + ++++ + LL D + ILEI G Sbjct: 61 DLKVTLELISEDPD--SGMQDEFIGEADKLKKQLDRYQLGLLLNGKYDHNNAILEIHPGA 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EA + L RMY R+A +KV+VL + G + I+G + ++ E Sbjct: 119 GGTEAQDWGSMLLRMYTRWAETHDFKVDVLDYQVGEVAGINSVSILINGENAYGYLRSEK 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ +++GR HTS A+V V+PE ++ + I +++++D RASG+GGQHVN Sbjct: 179 GVHRLVRISPFDSAGRRHTSFASVDVMPELDDDVSIKISPDELKVDVYRASGAGGQHVNK 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ-- 296 T SAVRITHIPTGI+V + +++SQ QNR A+ +L+++LY++E ++ A E++ Q Sbjct: 239 TSSAVRITHIPTGIVVASQAQRSQLQNRQTALNMLKSKLYELEEQKKAEEKAKIEGEQLD 298 Query: 297 IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IG G +IR+Y F + DHR N + V+ G +D IN L Sbjct: 299 IGWG---SQIRSYVFHPYSMVKDHRTNYETANVNGVMDGDLDPFINAYLQWQ 347 >gi|319789223|ref|YP_004150856.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1] gi|317113725|gb|ADU96215.1| hypothetical protein Theam_0242 [Thermovibrio ammonificans HB-1] Length = 373 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 122/349 (34%), Positives = 187/349 (53%), Gaps = 12/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +K R +EIE M+ + K L+ E + + +QK ++ + L Sbjct: 27 DLDKMKRRLSEIEEEMASPDFWNDPKKAQSLSVERNHLEQELEAFKSVEQKIEDSEVLIE 86 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D + D A+ + ++K + LE + D + I+ I AG GG+E Sbjct: 87 MA-EEEQDGSLLDEAEQMLSDLDKTLDRLEV----KKVLSGEFDKNNAIVTIHAGAGGTE 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + ++VE+L +N++ G K I G + ++ E G HR Sbjct: 142 SCDWAQMLMRMYIRWAERKGFEVEILDLQENEEAGIKSATLLIKGPYAYGFLRAEHGTHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ R HTS V V+PE E +V+I ED+RIDT RASG+GGQHVN TDSA Sbjct: 202 LVRISPFDANARRHTSFCGVIVVPEIDEDIEVEIKEEDLRIDTYRASGAGGQHVNKTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V SE+SQ QNR RAMK+L+ARLY++ER++ + + R + S Sbjct: 262 VRITHIPTGIVVTCQSERSQIQNRQRAMKILKARLYELERQKREEKIAQAR-GEHKSIAW 320 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F R + DHR + ++ V+ G ID I L + Sbjct: 321 GNQIRSYIFQPYRLVKDHRTGVETSNIDAVMDGDIDLFIEAYLKQKARE 369 >gi|114331309|ref|YP_747531.1| peptide chain release factor 2 [Nitrosomonas eutropha C91] gi|114308323|gb|ABI59566.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrosomonas eutropha C91] Length = 348 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+E + + + +L E ++ I+ + D++ Q+ Q+L + Sbjct: 11 DAKQVRLTELERQSEDPAIWNDPARAQELGREKKSLENIVFTLRSIDRQLQDAQELLQIA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D + +++ + + + D D +C ++I++G+GG+EA Sbjct: 71 QEESDDETLHSISEDVAGLAKTVEEM-----EFHRMFSDPMDPNNCFIDIQSGSGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY Y R VE+L S D G K +SG + ++ E+GVHR+ Sbjct: 126 DWASMLERMYLHYCERRGLAVELLEESPGDVAGIKSATIKVSGEYAYGYLRTETGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + ++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 186 RKSPFDSGNRRHTSFASVFVYPEVDDSIEIDINPADLRVDTYRASGAGGQHINKTDSAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITHIPTGI+V S +SQH+NR AM VL++RLY+ E ++ + + K I G Sbjct: 246 ITHIPTGIVVQCQSGRSQHRNRADAMTVLKSRLYEAELRKRNETKQAIEDSKTDIAWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 304 -HQIRSYVLDQSRIKDLRTNIEVGNTQAVLDGDLDVFIEASLKQ 346 >gi|319795017|ref|YP_004156657.1| hypothetical protein Varpa_4378 [Variovorax paradoxus EPS] gi|315597480|gb|ADU38546.1| hypothetical protein Varpa_4378 [Variovorax paradoxus EPS] Length = 367 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 169/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L E ++ ++ + + +L + Sbjct: 30 DAKAERLRTVNASLEDPNVWNDPKKAQELGREKKSLDDVVVTLDRLTNGLSDNSELFEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + +E +I++LE + + + D + ++I+AG GG+EA Sbjct: 90 KEE-GDMDGLQSISDDAATLEADIKQLE----FRRMFNNPADPLNAFVDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K ++ + D G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKTQIEDETPGDTAGIKGATIKVEGDYAFGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + ++DI D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASIFVYPEIDDSIEIDINPSDVRTDTFRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A K LR+RLYD E ++ E+ + K +G G Sbjct: 265 LTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYDHEMRKRQEEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 365 >gi|295394649|ref|ZP_06804868.1| peptide chain release factor RF1 [Brevibacterium mcbrellneri ATCC 49030] gi|294972542|gb|EFG48398.1| peptide chain release factor RF1 [Brevibacterium mcbrellneri ATCC 49030] Length = 359 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 142/341 (41%), Positives = 200/341 (58%), Gaps = 14/341 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + IE ++ KLT Y+ + I +Q + +D + Sbjct: 12 VRSLLDEHERIEAELANPDVHANAGLARKLTRRYSELDQIAKTYRELNQCLSDVEDAKEL 71 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +E E+ I L++++ LL+PKD DD + I+E++AG GG E+ Sbjct: 72 ASEDPAFAEEAKSL-------EERIEVLQDKLRELLIPKDPDDARDAIIEVKAGEGGDES 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG--VFSRMKFESGVH 183 ALF GDL RMY+R+A R W EVL S++ + GGYK+I I R V+ +KFE GVH Sbjct: 125 ALFAGDLVRMYQRWADHRGWSTEVLDSTEANLGGYKDITIAIKSREGGVYGWLKFEGGVH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP TE+ GR+HTSAA V V PE ++ + D++ID R+SG GGQ VNTTDS Sbjct: 185 RVQRVPVTESQGRIHTSAAGVLVFPEVDEPEEIQLDDNDLKIDVYRSSGPGGQSVNTTDS 244 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTGI+ +EKSQ QN+ AM++LRAR+ + + A E + R+ Q+ + D Sbjct: 245 AVRITHLPTGIVASCQNEKSQLQNKEAAMRMLRARILAKQAEEAAAEANDMRRSQVRTVD 304 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 RSERIRTYNF + RI DHR Y L+ VL G +DD++ Sbjct: 305 RSERIRTYNFPENRIVDHRTGFKAYNLDQVLDGRLDDVVES 345 >gi|224131216|ref|XP_002321029.1| predicted protein [Populus trichocarpa] gi|222861802|gb|EEE99344.1| predicted protein [Populus trichocarpa] Length = 416 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 131/340 (38%), Positives = 218/340 (64%), Gaps = 5/340 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +++ + V Y KL + A + ++S + ++ +D Sbjct: 57 KLESAEKTWKELSVKLGDPDVVSNPSEYQKLAQSVAELDEVVSIFKRFKDCEKMLEDTRA 116 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +D ++ ++ E+ ++ E+++LE ++ LLLP D D ++ +LE+RAGTGG E Sbjct: 117 LAKEDGNDEDMAEMIAYEIESLSSELKQLEEKLTVLLLPSDPLDARNILLEVRAGTGGDE 176 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A L+ GDL RMY+RY+ WKV V+SSS+ + GGYK V + G+ V+S++K+ESGVHR Sbjct: 177 AGLWAGDLVRMYQRYSEQNSWKVSVISSSEAEKGGYKTYVMEVKGKSVYSKLKYESGVHR 236 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TEA GRVHTS ATVA++PE E++V I ++ + T R+ G+GGQ+VN ++AV Sbjct: 237 VQRVPQTEAQGRVHTSTATVAIMPEVDEVEVVIDPKEYELTTARSGGAGGQNVNKVETAV 296 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E++Q QNR RA+++LRA+LY+++ + RK+Q+G+G R+ Sbjct: 297 DLIHKPTGIRIFCTEERTQLQNRNRALQLLRAKLYEIKVREQQESIRNQRKMQVGTGARA 356 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 E+IRTYN+ R+TDHR+ + ++L L G I++ + Sbjct: 357 EKIRTYNYKDNRVTDHRLKVN-FELTSFLAGDIENAVQAC 395 >gi|260879267|ref|ZP_05891622.1| peptide chain release factor 1 [Vibrio parahaemolyticus AN-5034] gi|308089661|gb|EFO39356.1| peptide chain release factor 1 [Vibrio parahaemolyticus AN-5034] Length = 325 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 150/318 (47%), Positives = 212/318 (66%), Gaps = 7/318 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLAAAEEMAKE--DDEEMREMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY +YA R W++EV+SS++ + GGYKE++A +SG G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSKYAEKRGWRIEVMSSNEAEHGGYKEMIAKVSGDGAYGVLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+ E E D +I D++IDT RASG+GGQH Sbjct: 179 FESGGHRVQRVPATESQGRVHTSACTVAVMAEIPEADLPEIKAADLKIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITH+PTG +V E+SQH+N+ +AM VL AR+ E++R A E S R+ Sbjct: 239 VNTTDSAIRITHLPTGTVVECQDERSQHKNKAKAMAVLAARIVQAEQERRAAEVSDTRRN 298 Query: 296 QIGSGDRSERIRTYNFSQ 313 +GSGDRS+RIRTYN+ Q Sbjct: 299 LLGSGDRSDRIRTYNYPQ 316 >gi|54307774|ref|YP_128794.1| putative peptide chain release factor 2 [Photobacterium profundum SS9] gi|46912197|emb|CAG18992.1| putative peptide chain release factor 2 [Photobacterium profundum SS9] Length = 353 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + E+ + + + L + AA+ ++ I D ++ L + Sbjct: 16 DAKKEQLEEVNAELEQPAVWNEPERAQALGKSRAALEAVVETIDQLDLGVEDVAGLLELA 75 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ E+ ++ + + D C ++++AG+GG+EA Sbjct: 76 VEEDDQETFDEIEPE-----LAELEAKLAKLEFRRMFSGEYDSSDCYIDLQAGSGGTEAQ 130 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+A + +K E++ S D G K + G + ++ E+GVHR+ Sbjct: 131 DWTSMMLRMYLRWADAKGFKTEIIEVSAGDVAGLKSATIRLVGEYAYGWLRTETGVHRLV 190 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A+ V PE + +DI D+RID RASG+GGQHVNTT+SAVR Sbjct: 191 RKSPFDSGGRRHTSFASAFVYPEIDDNIVIDINPSDLRIDVYRASGAGGQHVNTTESAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+L++ E ++ E+ + K IG G Sbjct: 251 ITHVPTNIVVQCQNDRSQHKNKDQAMKQLKAKLFEFEMQKKNAEKQANEDSKSDIGWG-- 308 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 309 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLK 350 >gi|12045113|ref|NP_072924.1| peptide chain release factor 1 [Mycoplasma genitalium G37] gi|255660257|ref|ZP_05405666.1| peptide chain release factor 1 [Mycoplasma genitalium G37] gi|1350577|sp|P47500|RF1_MYCGE RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|1045950|gb|AAC71478.1| peptide chain release factor 1 [Mycoplasma genitalium G37] gi|166078949|gb|ABY79567.1| peptide chain release factor 1 [synthetic Mycoplasma genitalium JCVI-1.0] Length = 359 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 144/347 (41%), Positives = 215/347 (61%), Gaps = 4/347 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++E +++ IK + +E P+I K + + + ++ Sbjct: 11 VEKIVELTEQLEKDLNKPNLSFEQIKVINKELKHKQPLIVKFKELQKLVENANEAEQILN 70 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++S E+ + A+ E+ I+ + LE EI +LLLP D ++ K+ I+EIR GG E+ + Sbjct: 71 -NSSLKELHEEAKKELEKIKASLPSLEEEIKFLLLPVDENNQKNVIVEIRPAAGGDESCI 129 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F+ DLF MY+ Y + W VE+ G + ++G VF+++KFESGVHRVQR Sbjct: 130 FLSDLFNMYKNYCTSKNWTVELNEIIPASV-GINFVSFAVNGTDVFAKLKFESGVHRVQR 188 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 VP TEA GRVHTS TVAVLP+ E+++ I D+RIDT RASG+GGQHVN T+SAVRIT Sbjct: 189 VPLTEAKGRVHTSTVTVAVLPQLEEVEITINPSDLRIDTYRASGAGGQHVNRTESAVRIT 248 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V KSQ NR +AMK+LRA+L++ + + + ++ RK Q+GSG+R+E+I Sbjct: 249 HLPTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVGSGERAEKI 308 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 RTYN+ Q RITDHRI LT+ KL V+ G +D+II L + + + Sbjct: 309 RTYNYPQNRITDHRIKLTINKLNTVILGDLDEIIEALQADEKKQQLE 355 >gi|115486501|ref|NP_001068394.1| Os11g0657100 [Oryza sativa Japonica Group] gi|77552370|gb|ABA95167.1| Peptide chain release factor 1, putative, expressed [Oryza sativa Japonica Group] gi|113645616|dbj|BAF28757.1| Os11g0657100 [Oryza sativa Japonica Group] gi|215686469|dbj|BAG87730.1| unnamed protein product [Oryza sativa Japonica Group] gi|215694739|dbj|BAG89930.1| unnamed protein product [Oryza sativa Japonica Group] gi|218186139|gb|EEC68566.1| hypothetical protein OsI_36894 [Oryza sativa Indica Group] gi|222616368|gb|EEE52500.1| hypothetical protein OsJ_34701 [Oryza sativa Japonica Group] Length = 416 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 133/353 (37%), Positives = 221/353 (62%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +R+++ V Y KL + A + ++S + +++ ++ Sbjct: 57 KLDSAEKAWKEMSVRLADPDIVSDPSEYQKLAQSVAELDQVVSTYRQFKDCEKQIEETKV 116 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ D ++ ++ E+ ++ ++ ELE ++ LLLP D D ++ +LE+RAG GG E Sbjct: 117 LQKENEDDPDMAEMIDSEMESLSNQLEELEEKLKLLLLPNDPLDARNILLEVRAGAGGDE 176 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY++Y WK + +SSS+ + GG+K V + G+ V+S++KFESGVHR Sbjct: 177 AGIWAGDLVRMYQKYCERNSWKFKPVSSSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHR 236 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E+DV I +DI + T R+ G+GGQ+VN ++AV Sbjct: 237 VQRVPQTETMGRVHTSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAV 296 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QNR RA ++LRA+LY+++ + RKLQ+G+G RS Sbjct: 297 DLIHKPTGIRIFCTEERSQLQNRERAFQLLRAKLYEIKLREQQESIRNQRKLQVGTGARS 356 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+ + ++L L G I+ + + Q +++ + Sbjct: 357 EKIRTYNYKDNRVTDHRLKMN-FELTGFLMGDIESAVQSCSSMEQKELLEEMA 408 >gi|229827336|ref|ZP_04453405.1| hypothetical protein GCWU000182_02724 [Abiotrophia defectiva ATCC 49176] gi|229788274|gb|EEP24388.1| hypothetical protein GCWU000182_02724 [Abiotrophia defectiva ATCC 49176] Length = 340 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 105/335 (31%), Positives = 171/335 (51%), Gaps = 6/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E+ +SE D K A IS + + I +D+ + D+ +I +++ Sbjct: 2 RLEELNRLISEPGFWDNADKANATMAEISSLKNGIESFDELQTMYDDIGALIEMAEEEND 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +++I + + + L D + I+ + AG GG+EA + G L R Sbjct: 62 SSMVSEIGDELERFKTEF--DTLRISTLLSGPYDKDNAIITLHAGAGGTEACDWTGILMR 119 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 Y R+A + +K EV+ ++ G K I+G + +K E GVHR+ R+ A+ Sbjct: 120 AYTRWADSKGFKTEVIDYLAGEEAGVKSCTIEITGTNAYGYLKSEHGVHRLVRISPFNAA 179 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G+ TS + V+P +ID++I ED+RIDT RASG+GGQH+N T SA+RITH P+GI Sbjct: 180 GKRQTSFVSCDVMPDIEEDIDIEIKDEDMRIDTFRASGAGGQHINKTSSAIRITHFPSGI 239 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 +V +E+SQ QN+ +AM++L+A+LY + ++ + + R Q +IR+Y Sbjct: 240 VVSCQNERSQFQNKAKAMQMLKAKLYMLRQQENEAKEAGIRGEQ-KDIAWGSQIRSYVLQ 298 Query: 313 QG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N+ + + VL G D IN L Sbjct: 299 PYTMVKDHRTNVEIGNAQTVLDGNFDPFINAYLKW 333 >gi|152985089|ref|YP_001346821.1| peptide chain release factor 2 [Pseudomonas aeruginosa PA7] gi|150960247|gb|ABR82272.1| peptide chain release factor 2 [Pseudomonas aeruginosa PA7] Length = 382 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + + + L E A ++ ++ + + +DL + Sbjct: 45 DQKHDRLVEVNRELEDPNVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMA 104 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D+A E+ LE + + + D + L+I+AG+GG+EA Sbjct: 105 VEEGDEGAVGDVAGEV----ERLREILEK-LEFRRMFSGEMDPNNAYLDIQAGSGGTEAQ 159 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + ++ S+ + G K + G F ++ E GVHR+ Sbjct: 160 DWANMLLRMYLRWADKHGFDATIIELSEGEVAGIKGATVHVKGEYAFGWLRTEIGVHRLV 219 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 220 RKSPFDSGNRRHTSFTAVFVSPEIDDNIEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 279 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY+ E ++ A++ + K IG G Sbjct: 280 ITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYEQEMQKRTAASQALEDTKSDIGWG-- 337 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + VL G +D+ + L Sbjct: 338 -HQIRSYVLDQSRIKDLRTGIERSDCDKVLDGDLDEYLEASLKQ 380 >gi|229541533|ref|ZP_04430593.1| peptide chain release factor 2 [Bacillus coagulans 36D1] gi|229325953|gb|EEN91628.1| peptide chain release factor 2 [Bacillus coagulans 36D1] Length = 327 Score = 233 bits (594), Expect = 3e-59, Method: Composition-based stats. Identities = 111/333 (33%), Positives = 170/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D + + + +++ + ++++ + H + + N +L Sbjct: 1 MLEPNFWDDQQEAQKIINESNALKEMVNGYRELESQQEDLEVTHELAKEENDSELKEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 EK LL D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 AELEAFTEKLNE-----YELQLLLNGPYDANNAILELHPGAGGTESQDWCSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE L D+ G K + G + +K E G+HR+ R+ +A+GR HT Sbjct: 116 GEKKGFKVETLDYLPGDEAGVKSVTLLFKGHNAYGYLKAEKGIHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +V++ ED+R+DT RASG+GGQH+N T SAVRITHIPTGI+V Sbjct: 176 SFVSCEVMPEIDDNIEVEVRPEDLRVDTYRASGAGGQHINKTSSAVRITHIPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ QNR +AMK+L+A+LY E + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIQNREQAMKMLKAKLYQKEVEEKEKQLAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N+ ++ V+ G ID I+ L AH Sbjct: 293 MVKDHRTNVETGNVQAVMDGEIDPFIDAYLRAH 325 >gi|227495018|ref|ZP_03925334.1| peptide chain release factor 1 [Actinomyces coleocanis DSM 15436] gi|226831470|gb|EEH63853.1| peptide chain release factor 1 [Actinomyces coleocanis DSM 15436] Length = 369 Score = 233 bits (594), Expect = 4e-59, Method: Composition-based stats. Identities = 142/359 (39%), Positives = 205/359 (57%), Gaps = 20/359 (5%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L +A++E +++ + KL + ++ +S I + + + + + Sbjct: 14 LLEEYAQVEASLADPEVLADRTQQRKLAKRFSELSVIKNAADALSMAADDLEAAKEMAKE 73 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +S E+ +E + + +L+P+D D + ILEI+AG GG E+ALF Sbjct: 74 DSS-------FAAEIPEMEVALEAAHARLVKILIPRDPADADNVILEIKAGEGGEESALF 126 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 +L RMY RYA + WKV+ LSS+ GG KE+ +I GV++ +KFE G Sbjct: 127 AAELARMYTRYAETKGWKVKELSSTYTGLGGVKEVSLSIAAKSDVAPEDGVWAHLKFEGG 186 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNT 239 VHRVQRVP TE+ GR+HTSA V V PE + D I D+RID R+SG GGQ VNT Sbjct: 187 VHRVQRVPVTESQGRIHTSAVGVLVTPEVEDDTEDLVIDQNDLRIDVFRSSGPGGQSVNT 246 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTG++V+ +EKSQ QN+ AM+VLR+RL +ER++ E SA R Q+ Sbjct: 247 TDSAVRITHIPTGVVVSMQNEKSQLQNKEAAMRVLRSRLIQLEREKKEAEASAMRASQVR 306 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF + RI DHR Y L VL+G + +I + + + + +A + Sbjct: 307 TVDRSERIRTYNFPENRIADHRTGYKAYNLATVLEGELGPVIESAIVLEEQRRMEAAGQ 365 >gi|225022790|ref|ZP_03711982.1| hypothetical protein CORMATOL_02835 [Corynebacterium matruchotii ATCC 33806] gi|305682007|ref|ZP_07404811.1| peptide chain release factor 1 [Corynebacterium matruchotii ATCC 14266] gi|224944397|gb|EEG25606.1| hypothetical protein CORMATOL_02835 [Corynebacterium matruchotii ATCC 33806] gi|305658480|gb|EFM47983.1| peptide chain release factor 1 [Corynebacterium matruchotii ATCC 14266] Length = 360 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 147/356 (41%), Positives = 213/356 (59%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE +MS+ +V + KL++ Y+ + PI+ + +Q + + D + Sbjct: 11 VDDIVSEYQGIEAQMSDPETVGDQALFRKLSKRYSELQPIMKVNTALEQARADLADAKEM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + D + E+ ELE ++ LL P+D D ++EI+AG GG EA Sbjct: 71 AYEDSEFAPEAD-------RLAGEVVELEEKLADLLAPRDPHDGDDIVMEIKAGAGGEEA 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + EVL S++D GG K++ +I + +S KFE Sbjct: 124 ALFAGELVRMYQRYADKHGFSTEVLGLSESDLGGVKDMTLSIRSKQPSRDGAWSVFKFEG 183 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE EI +I +DIR+D R+SG GGQ VNT Sbjct: 184 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEIAAVEIDDKDIRVDVYRSSGKGGQGVNT 243 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V E+SQ QN+ RA++VL ARL + ++ E + R QI Sbjct: 244 TDSAVRITHLPTGIVVTCQKERSQIQNKARALQVLAARLQALAEEQAEAEAAQGRAAQIR 303 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI+DHRI L+ VL G ++D+ L TA +A + + Sbjct: 304 TLDRSERIRTYNWPENRISDHRIGFKANNLDSVLNGDMEDLFTALRTAERAARLEA 359 >gi|297544050|ref|YP_003676352.1| hypothetical protein Tmath_0587 [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841825|gb|ADH60341.1| hypothetical protein Tmath_0587 [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 368 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 179/350 (51%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 I +K EI+ M++ + K L + + ++ + + +K ++ Sbjct: 19 MGVSLDIEGVKREIEEIDKEMADPDFWNDIKKSQELAKRQKELKELLEEYNSLVRKWEDL 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + + +S ++ + +K + L D + IL I AG Sbjct: 79 TTLIELGLEEGDESITEEVDKEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 +GG+EA + L RMY R+A + + VE L ++ G K + I G + +K E Sbjct: 134 SGGTEAQDWAEMLLRMYTRWANDKGFDVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ +A+GR HTS A V VLPE +I+V+I ED+RIDT RASG+GGQ+VN Sbjct: 194 AGVHRLVRISPFDAAGRRHTSFALVEVLPELEDDIEVEIRPEDLRIDTYRASGAGGQYVN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVRITH+PTGI+V +E+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 254 KTESAVRITHLPTGIVVSCQNERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEH 312 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + ++ V+ G IDD IN L Sbjct: 313 KEAAWGNQIRSYVFQPYTLVKDHRTNFEVGNVQAVMDGEIDDFINAYLKQ 362 >gi|87300884|ref|ZP_01083726.1| peptide chain release factor 1 [Synechococcus sp. WH 5701] gi|87284755|gb|EAQ76707.1| peptide chain release factor 1 [Synechococcus sp. WH 5701] Length = 367 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 145/356 (40%), Positives = 224/356 (62%), Gaps = 5/356 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQ 60 L +++ F +E ++++ +L++E A + P+ + + + +++ + Sbjct: 5 LLRERLEAADRTFQALERQLADPAVAADPSELRRLSKERARLEPLATGLGHWQSLQRQLK 64 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + D E+ L Q E+ + ++ LE ++ LLP D D++S +LEIRAGT Sbjct: 65 EAQQLARQSKGDPEMEALIQEELRELGAQLDGLEQQLTLALLPSDPRDERSVMLEIRAGT 124 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAAL+ GDL RMYER+A W V+ LS+S++D GG+KE++ I G GV+S++K+E+ Sbjct: 125 GGDEAALWAGDLARMYERFAQTVGWSVQPLSASESDLGGFKELILAIRGDGVYSQLKYEA 184 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATE+ GRVHTS ATVAV+PEA ++V + D+ I T R+ G+GGQ+VN Sbjct: 185 GVHRVQRVPATESQGRVHTSTATVAVMPEADPVEVQLDPADLDISTARSGGAGGQNVNKV 244 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AV + H PTGI + + E+SQ QNR RA+++LRA+L + E A S+ R+ Q+GS Sbjct: 245 ETAVDLLHKPTGIRVFCTQERSQLQNRERALEILRAKLLERELAEAAAAESSARRAQVGS 304 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G+RSE+IRTYN R+TDHR+ + LE VLQG + ++I + A Q + Sbjct: 305 GERSEKIRTYNAKDNRVTDHRLGRN-FALEPVLQGQLAEVIGACVAAEQKTRLEQL 359 >gi|326771965|ref|ZP_08231250.1| peptide chain release factor 1 [Actinomyces viscosus C505] gi|326638098|gb|EGE38999.1| peptide chain release factor 1 [Actinomyces viscosus C505] Length = 364 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 146/359 (40%), Positives = 203/359 (56%), Gaps = 18/359 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 L +A+IE M+ + D +L YA + +++ + + D + Sbjct: 9 EPLLAEYADIEAEMAGPAAADPGAMRRLGRRYAELGRVVAAYRAWQSASADLADARELAA 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + EV A+E + +L+P+D DD + I+E++AG GG E+AL Sbjct: 69 EDED-------FAAEVPALEAAEAAAGEHLREVLVPRDPDDSRDVIIEVKAGEGGEESAL 121 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFES 180 F DL RMY RYA + W VEVL ++D+D GGYK++ I GV++ +K+E Sbjct: 122 FASDLARMYSRYAERQGWAVEVLDATDSDLGGYKDVRLAIKARGPVEPQDGVWAHLKYEG 181 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V V+PEA + I D+RID R+SG GGQ VNT Sbjct: 182 GVHRVQRVPVTESQGRIHTSAAGVLVMPEADDPGELQIDAADLRIDVFRSSGPGGQSVNT 241 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V+ +EKSQ QN+ AM+VLRARL A E + R+ Q+ Sbjct: 242 TDSAVRITHLPTGIVVSMQNEKSQLQNKEAAMRVLRARLLAERAAAAAAEAAQARRSQVR 301 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + DRSERIRTYNF + RI DHR Y L+ VL G + +I + +A+ + E Sbjct: 302 TVDRSERIRTYNFPENRIADHRTGFKAYNLDAVLDGDLGPVIASAIAMDEAERLSQVGE 360 >gi|50954441|ref|YP_061729.1| peptide chain release factor 1 [Leifsonia xyli subsp. xyli str. CTCB07] gi|61214606|sp|Q6AG71|RF1_LEIXX RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|50950923|gb|AAT88624.1| peptide chain release factor 1 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 358 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 140/361 (38%), Positives = 207/361 (57%), Gaps = 18/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + L +++ ++S+ K+ YA +S I++ + + Q + + Sbjct: 3 DSVTGLIAEHDDLQQQLSDPELHSDPVRSKKVNRRYAELSRIVAAYTEWKQLTDDLEAAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + D E+ +E+ + E E ++ LL+P+D +D + I+EI+ G GG+ Sbjct: 63 EL-------AAEDDAFAAEIPGLEQGLEESEEKLRRLLIPRDPNDSRDAIMEIKMGEGGA 115 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI------SGRGVFSRMK 177 E+ALF GDL MY YA R+WK E++ + +D GG K++ GV++ +K Sbjct: 116 ESALFAGDLLSMYLHYADSRRWKAEIIEQTSSDLGGIKDVQVAFKGSSSDPAEGVWAHLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 +E GVHRVQRVPATE+ GR+HTSAA V V PE E + I D++ID R+SG GGQ Sbjct: 176 YEGGVHRVQRVPATESQGRIHTSAAGVLVFPEVDEPEEVEINPNDLKIDVFRSSGPGGQS 235 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH PTGI+V+ +EKSQ QNR AM+VLRARL +++ E + RK Sbjct: 236 VNTTDSAVRITHAPTGIVVSMQNEKSQLQNREAAMRVLRARLLAKQQEEADAEAAEFRKG 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QI + +RSERIRTYNF + RI DHR Y L+ V+ G + +I + A + + + Sbjct: 296 QIRTMERSERIRTYNFPENRIADHRTGYKAYNLDAVMNGALGPVIESCILADEETRLANL 355 Query: 356 S 356 S Sbjct: 356 S 356 >gi|255029564|ref|ZP_05301515.1| peptide chain release factor 2 [Listeria monocytogenes LO28] Length = 366 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 184/348 (52%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + ++ R AE+E +M + + + + + ++E++ + Sbjct: 25 DLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + + L+ D D + ILE+ G GG+E Sbjct: 85 LLKEEADEDLQEELEKDIKAYMATISA-----FELKLMLSDPYDKNNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR Sbjct: 140 SQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+THIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 260 VRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 320 ---SQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 364 >gi|227513676|ref|ZP_03943725.1| peptide chain release factor 2 [Lactobacillus buchneri ATCC 11577] gi|227524821|ref|ZP_03954870.1| peptide chain release factor 2 [Lactobacillus hilgardii ATCC 8290] gi|227083087|gb|EEI18399.1| peptide chain release factor 2 [Lactobacillus buchneri ATCC 11577] gi|227088036|gb|EEI23348.1| peptide chain release factor 2 [Lactobacillus hilgardii ATCC 8290] Length = 354 Score = 233 bits (593), Expect = 4e-59, Method: Composition-based stats. Identities = 111/352 (31%), Positives = 179/352 (50%), Gaps = 10/352 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M L + E +M+E D + + + +K ++ +E Sbjct: 1 MALGGLFDFDALSESISINEAKMAEPGFWDDQQAAQKMIDETNQLKTKRDRFNTLTKELD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL + + D + Q E + ++++ + LL D + ILEI G Sbjct: 61 DLKVTLELISEDPD--SGMQDEFIGEADKLKKQLDRYQLGLLLNGKYDHNNAILEIHPGA 118 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EA + L RMY R+A +KV+VL + G + ISG + ++ E Sbjct: 119 GGTEAQDWGSMLLRMYTRWAESHNFKVDVLDYQVGEVAGINSVSILISGENAYGYLRSEK 178 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ +++GR HTS A+V V+PE ++ + I +++++D RASG+GGQHVN Sbjct: 179 GVHRLVRISPFDSAGRRHTSFASVDVMPELDDDVSIKISPDELKVDVYRASGAGGQHVNK 238 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ-- 296 T SAVRITHIPTGI+V + +++SQ QNR A+ +L+++LY++E ++ A E++ Q Sbjct: 239 TSSAVRITHIPTGIVVASQAQRSQLQNRQTALNMLKSKLYELEEQKKAEEKAKIEGEQLD 298 Query: 297 IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IG G +IR+Y F + DHR N + V+ G +D IN L Sbjct: 299 IGWG---SQIRSYVFHPYSMVKDHRTNYETANVNGVMDGDLDPFINAYLQWQ 347 >gi|167748494|ref|ZP_02420621.1| hypothetical protein ANACAC_03238 [Anaerostipes caccae DSM 14662] gi|317471975|ref|ZP_07931307.1| peptide chain release factor 2 protein [Anaerostipes sp. 3_2_56FAA] gi|167652486|gb|EDR96615.1| hypothetical protein ANACAC_03238 [Anaerostipes caccae DSM 14662] gi|316900379|gb|EFV22361.1| peptide chain release factor 2 protein [Anaerostipes sp. 3_2_56FAA] Length = 367 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 177/341 (51%), Gaps = 6/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + K R ++EL M + + + + + ++ Y+ K + +D+ T+I Sbjct: 27 LEEKKERIEQLELDMEAPGFWEDLEESQKVVREVKGLKDQVEGYEGLKGQFEDIETLIEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E + E E + L D + IL + AG GG+E+ + Sbjct: 87 AS--EEEDEELAAETQEAFAEFETAYENLRISTLLSGEYDKNNAILSLHAGAGGTESCDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L+RMY R+A + ++ +V+ D D+ G K + I G + ++ E GVHR+ R+ Sbjct: 145 AGMLYRMYTRWAGKKGFETKVIDYLDGDEAGIKSVTVEIKGENAYGYLRSERGVHRLVRI 204 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A+ V+PE E +V+I EDIRIDT RASG+GGQH+N TDSA+RIT Sbjct: 205 SPFNAAGKRQTSFASCDVMPEIDEDLNVEIADEDIRIDTYRASGAGGQHINKTDSAIRIT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGI+V +E+SQH+N+ +AMK+L+ +LY ++ ++ + S R +G +I Sbjct: 265 HIPTGIVVQCQNERSQHKNKDQAMKMLKTKLYLLKEQQHLEKLSDIR-GDVGDNGWGSQI 323 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + DHR N VL G +D +N L Sbjct: 324 RSYVLQPYTMVKDHRTNKESGNPSAVLDGDLDGFMNAYLAW 364 >gi|229916623|ref|YP_002885269.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b] gi|259585245|sp|C4L5K9|RF2_EXISA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|229468052|gb|ACQ69824.1| peptide chain release factor 2 [Exiguobacterium sp. AT1b] Length = 366 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 174/345 (50%), Gaps = 16/345 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTV 65 + + + R AE+E M+ D K + E + ++ K + ++ + + Sbjct: 26 LTEKEARIAELENEMTYPDFWDNQEKAQKVIDESNGLKAMVDKYQDLANQHEDGEVTLEL 85 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I + +L + ++ +L D + ILE+ G GG+E+ Sbjct: 86 IKEEPDAEMQEELGESIQALKKEFDD-----FELEILLNGPYDANNAILELHPGAGGTES 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY+R+A + WKVE + ++ G K + I G + +K E G+HR+ Sbjct: 141 QDWASMLLRMYQRFADKQGWKVETVDYLPGEEAGVKSVTLRIVGHNAYGYLKAEKGIHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED+RIDT RASG+GGQH+NTTDSAV Sbjct: 201 VRISPFDSSGRRHTSFVSCDVMPEFDDDIEIEVRTEDLRIDTYRASGAGGQHINTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITH+PTG++V +E+SQ +NR AMK+L+A+LY E + R K IG G Sbjct: 261 RITHVPTGVVVSCQTERSQIKNRESAMKMLKAKLYQRELDEQQRKLDEIRGEKTDIGWG- 319 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + V+ G + I+ L Sbjct: 320 --SQIRSYVFHPYSMVKDHRTNYEVGNTSGVMDGDVMPFIDAYLR 362 >gi|254491393|ref|ZP_05104572.1| peptide chain release factor 2 [Methylophaga thiooxidans DMS010] gi|224462871|gb|EEF79141.1| peptide chain release factor 2 [Methylophaga thiooxydans DMS010] Length = 348 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 182/343 (53%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D + E+ + D KL +E A++ I++ +S + ++ +DL + Sbjct: 11 DDKAEQLVEVTRELESPSVWDDPDRAQKLGQERASLEKIVTTLSSHRDTLEDAKDLLELA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D E D ++ +EK + +LE + D S ++I++G+GG+EA Sbjct: 71 VEEN-DQETFDAITADLDELEKGLEKLEFQRM----FSGKLDKNSAYIDIQSGSGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +KVE++ S + G K + G F ++ E+GVHR+ Sbjct: 126 DWANILLRMYLRWGESQDYKVELMEVSAGEVAGIKSATIRMEGEYAFGMLRTETGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A++ V PE I++DI D+R+DT RASG+GGQHVNTTDSA+R Sbjct: 186 RKSPFDSGARRHTSFASIFVYPEVDDTIEIDINPADLRVDTYRASGAGGQHVNTTDSAIR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH PT I+V +E+SQH+N+ +AM LRA+LY++E ++ + + K IG G Sbjct: 246 ITHEPTNIVVQCQNERSQHKNKDQAMNQLRAKLYELELQKQNEVKQAAEESKSDIGWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + VL G +D I L Sbjct: 304 -SQIRSYVLDQSRIKDLRTGVETGNTQAVLDGDLDQFIEASLK 345 >gi|187478021|ref|YP_786045.1| peptide chain release factor 2 [Bordetella avium 197N] gi|123515203|sp|Q2L224|RF2_BORA1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|115422607|emb|CAJ49132.1| peptide chain release factor 2 [Bordetella avium 197N] Length = 367 Score = 232 bits (592), Expect = 5e-59, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + L E ++ ++ ++ Q + +L + Sbjct: 30 DAKTERLHVVNAELEDPAVWNDPKHAQDLGREKKSLEDVVQTLTELGQGVADALELFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D+ + + + ++ + LE + + + D +C L+I+AG GG+EA Sbjct: 90 AADEDDA-TLESIENDANTFQERLEGLE----FRRMFSNPADPLNCFLDIQAGAGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K EVL S+ + G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKAEVLEESEGEIAGIKSATIKLEGEYAFGYLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE +V++ D+R+DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRVDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+P+GI+V +++SQH+NR AM++L+++LY++E ++ E+ + K +G G Sbjct: 265 ITHMPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRKRMAEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 365 >gi|261855042|ref|YP_003262325.1| hypothetical protein Hneap_0421 [Halothiobacillus neapolitanus c2] gi|261835511|gb|ACX95278.1| hypothetical protein Hneap_0421 [Halothiobacillus neapolitanus c2] Length = 365 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 171/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E++ + + L +E A++ ++ ++ Q + DL + Sbjct: 28 DVKKERLEEVDRELEVPDVWNDPARAQALGKERASLERVVHTLANMAQGLNDNADLLEMA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + E + ++ + + D+ + L+I++G GG+E+ Sbjct: 88 AEEDD-----EATVASIEKDVVEFEKQIADLEFRRMFSGEMDESNAYLDIQSGAGGTESQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R +K EV+ SD + G K G F ++ E GVHR+ Sbjct: 143 DWASILMRMYLRWGDRRGFKTEVMEMSDGEVAGIKSATIRFEGEYAFGWLRTEIGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE I++++ D+R+D RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSDNRRHTSFASVFVSPEVDDNIEIEVNPADLRVDVFRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 TH+PTG++V +E+SQ QNR RAMK+L+A+LY++E ++ + + K + G+ Sbjct: 263 FTHLPTGVVVACQAERSQIQNRERAMKMLKAKLYELEVQKRNAVSQALEDTKSDVSWGN- 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + VL G +D I L Sbjct: 322 --QIRSYVLDQSRIKDLRTGHETGNTQAVLDGDLDPFIEASLK 362 >gi|289577756|ref|YP_003476383.1| hypothetical protein Thit_0519 [Thermoanaerobacter italicus Ab9] gi|289527469|gb|ADD01821.1| hypothetical protein Thit_0519 [Thermoanaerobacter italicus Ab9] Length = 368 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 116/350 (33%), Positives = 180/350 (51%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 I +K EI+ +M++ + K L + + ++ + + +K ++ Sbjct: 19 MGVSLDIEGVKREVEEIDKKMADPDFWNDIKKSQELAKRQKELKELLEEYNSLVRKWEDL 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + + +S ++ + +K + L D + IL I AG Sbjct: 79 TTLIELGLEEGDESITEEVDKEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 +GG+EA + L RMY R+A + + VE L ++ G K + I G + +K E Sbjct: 134 SGGTEAQDWAEMLLRMYTRWANDKGFDVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ +A+GR HTS A V VLPE +I+V+I ED+RIDT RASG+GGQ+VN Sbjct: 194 AGVHRLVRISPFDAAGRRHTSFALVEVLPELEDDIEVEIRPEDLRIDTYRASGAGGQYVN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVRITH+PTGI+V +E+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 254 KTESAVRITHLPTGIVVSCQNERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEH 312 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + ++ V+ G IDD IN L Sbjct: 313 KEAAWGNQIRSYVFQPYTLVKDHRTNFEVGNVQAVMDGEIDDFINAYLKQ 362 >gi|67461211|sp|Q8Y4D8|RF2_LISMO RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 366 Score = 232 bits (592), Expect = 6e-59, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 184/348 (52%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + ++ R AE+E +M + + + + + ++E++ + Sbjct: 25 DLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + + L+ D D + ILE+ G GG+E Sbjct: 85 LLKEEADEDLQEELEKDIKAYMATISA-----FELKLMLSDPYDKNNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR Sbjct: 140 SQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+THIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 260 VRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 320 ---SQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 364 >gi|53802400|ref|YP_112836.1| peptide chain release factor 2, programmed frameshift [Methylococcus capsulatus str. Bath] gi|53756161|gb|AAU90452.1| peptide chain release factor 2, programmed frameshift [Methylococcus capsulatus str. Bath] Length = 365 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + D L +E + ++++++ + +L + Sbjct: 28 DTKQERLTEVLRELEDPRIWDNPERAQALGKERTQLEGVVNRLNEIAAGIDDAAELLQLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +A + + D + L+I+AG+GG+EA Sbjct: 88 VEEDDEDSVESVAADLAHYESVVAEM-----EFRRMFSGEMDPNNAFLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +K E++ S + G K G + ++ E+GVHR+ Sbjct: 143 DWAQMLERMYLRWGERKGFKTELVEESPGEVAGIKSATIRFEGEYAYGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS ++V V PE + D+R D RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGNRRHTSFSSVFVSPEIDDNIDIDINPADLRTDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH NR MK LRA+LY++E ++ E+ + K IG G Sbjct: 263 ITHLPTGIVVQCQNQRSQHANRDWCMKQLRAKLYELEMQKRNTEKQKLEDSKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R N+ + VL G +D I L Sbjct: 321 -SQIRSYVLDQSRIKDLRTNVETGNPQAVLDGDLDMFIEASLK 362 >gi|170017955|ref|YP_001728874.1| peptide chain release factor 2 [Leuconostoc citreum KM20] gi|238688939|sp|B1MW26|RF2_LEUCK RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|169804812|gb|ACA83430.1| Peptide chain release factor 2 [Leuconostoc citreum KM20] Length = 372 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 182/343 (53%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E RM+E D K + + + ++ + + +++ +I Sbjct: 25 DLEALTEEIADFENRMTEPGFWDDNTKAQKVIEENNVLKNRRDSFLNLTNQAEEIEVLID 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D D A +I + +++E LL + D + + ILE+ G+GG+E+ Sbjct: 85 MLAEDPGDVDTATELADSIAQAQKDVEAYNLEQLLTEPYDAN-NAILEVHPGSGGTESTD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A ++V+VL D+ G I+G F ++ E GVHR R Sbjct: 144 WGANLYRMYTRWAQQHGFQVDVLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE I+V++ +DI++D R+ G+GGQ+VN + VR+ Sbjct: 204 ISPFDSAGRRHTSFVSVDVMPELDDTIEVEVRDDDIKMDVFRSGGAGGQNVNKVSTGVRL 263 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V+S+ E++Q+ NR AMK+L+++LY +E ++ ER+A ++ +G + Sbjct: 264 THEPTGIVVSSTVERTQYGNRDYAMKLLKSKLYQLELEKQEAERAALTGEKMENG-WGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + DHR N + + VL G +D IN L Sbjct: 323 IRSYVLHPYQMVKDHRTNYETNQPQQVLDGDLDPFINAYLQWQ 365 >gi|239816762|ref|YP_002945672.1| hypothetical protein Vapar_3791 [Variovorax paradoxus S110] gi|259585247|sp|C5CUX0|RF2_VARPS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|239803339|gb|ACS20406.1| conserved hypothetical protein [Variovorax paradoxus S110] Length = 367 Score = 232 bits (591), Expect = 6e-59, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L E ++ ++ + + +L+ + Sbjct: 30 DAKAERLRTVNASLEDPNVWNDPKKAQELGREKKSLDDVVVTLDRLTSGLSDNTELYEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D + + A+E +I++LE + + + D + ++I+AG GG+EA Sbjct: 90 KE-DGDMDGLQSIADDAAALETDIKQLE----FRRMFNNPADPLNAFVDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K ++ + D G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKTQIEDETPGDTAGIKGATIKVEGDYAFGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASIFVYPEIDDSIEIEINPADVRTDTFRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A K LR+RLYD E ++ E+ + K +G G Sbjct: 265 LTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYDHEMRKRQEEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 365 >gi|145596156|ref|YP_001160453.1| peptide chain release factor 1 [Salinispora tropica CNB-440] gi|145305493|gb|ABP56075.1| bacterial peptide chain release factor 1 (bRF-1) [Salinispora tropica CNB-440] Length = 362 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 155/347 (44%), Positives = 208/347 (59%), Gaps = 18/347 (5%) Query: 4 LSHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +++ L + +AE+E R+++ + ++ YA + P+ + Q Sbjct: 1 MSSERLVTLLDEYAELENRLADPAIHADQNTARRVGRRYAELVPLHKAATELTQ------ 54 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E AI + LE + LL+P+D D K I+EI+AG Sbjct: 55 -ARADLAAAKELAAEDPAFAAEAEAIAATLPALEECLAELLIPRDPHDAKDVIVEIKAGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVF 173 GG E+ALF GDL RMY RYA W VEV+ + D+D GG K++ I GV+ Sbjct: 114 GGEESALFAGDLLRMYTRYAERCGWLVEVIDAQDSDLGGVKDVSLAIKSKGVPEGGNGVW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+E GVHRVQRVP TE+ GR+HTSAA V +LPEA EIDV I ++RID R+SG G Sbjct: 174 SRLKWEGGVHRVQRVPVTESQGRIHTSAAGVLMLPEAEEIDVTIDPNELRIDVFRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QNR +AM++LRARL V +++ S Sbjct: 234 GQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQAMRILRARLLAVAQEQADAAASDA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 RK Q+ + DRSERIRTYNF Q RITDHRI T Y L+ L G +D + Sbjct: 294 RKAQVRTVDRSERIRTYNFPQNRITDHRIGYTAYNLDLALAGELDGV 340 >gi|147818957|emb|CAN67129.1| hypothetical protein VITISV_040170 [Vitis vinifera] Length = 1542 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 146/359 (40%), Positives = 218/359 (60%), Gaps = 29/359 (8%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + +++ +++R A ++ ++ S Y + +E + I I+ K++E Sbjct: 1207 LIGIMEQRLSAIEHRSAYLQDFINRPEASPVEYARANKELRKLRSSIEHITELRNKQKEI 1266 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L +++ + + D ++ ++A E+ E + L+N + LLPKD D++ CILE+RAG Sbjct: 1267 DGLKSLMAECSEDKDMLNMAAEELGQAAGEEKRLQNLLLKSLLPKDEADERDCILEVRAG 1326 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+F+MYE+Y+ WK EV+ +++D GYKE ISG GV+ ++KFE Sbjct: 1327 TGGEEASLFAMDIFKMYEKYSQKNGWKFEVVDITESDLKGYKEASGAISGSGVYGKLKFE 1386 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG+HRVQ V V + ED+RIDT R+ GSGGQH NT Sbjct: 1387 SGIHRVQ-----------------VDV---------QLRNEDLRIDTYRSGGSGGQHANT 1420 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITHIP+G+ V E+SQH N+ +A+KVL A+LY++ER R+ +RS R QIG Sbjct: 1421 TNSAVRITHIPSGMTVAIQDERSQHMNKAKALKVLCAKLYEIERSRIQKDRSKLRMEQIG 1480 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHR+ +T + + V+QG +D I+ LL + I S S Sbjct: 1481 SGDRSERIRTYNFPQGRVTDHRVGITHHSVNDVMQGENLDVFIDALLLQQEMDAIASFS 1539 >gi|291320737|ref|YP_003516002.1| peptide chain release factor 1 [Mycoplasma agalactiae] gi|290753073|emb|CBH41049.1| Peptide chain release factor 1 [Mycoplasma agalactiae] Length = 358 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 224/361 (62%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M K + ++K + E+ ++ + + + + +E A I I K Y+ + Sbjct: 1 MEKTMFKSLSEIKQSYLELLKKIDDPEVISNIKEYSAINKEIAKIREISEKFITYENILK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + + + A++ + ++ ELE + L+LP+D +DDK+ I+EIR Sbjct: 61 DVEQAKIMLESKSEEE--VEFAKMIIDENSLKLEELEERLKILILPQDENDDKNIIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLFRMY ++A +++++LS++ GG+ +IV +I G +S+ K Sbjct: 119 GAAGGDEANIFAGDLFRMYSKFADELGFRLKILSTNSASAGGFSQIVFSIKGEKAYSKFK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTS TV V+PE + +++I D++ID R+SG+GGQ Sbjct: 179 FESGVHRVQRVPVTESQGRIHTSTTTVTVMPEIDDSVEIEIKPSDLKIDVFRSSGAGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PT I+V + E+SQ NR A+ +L+++LYD+E ++ A E S RKL Sbjct: 239 VNTTDSAVRITHLPTNIVVTSQDERSQIANRETALTILKSKLYDLEMQKKAEEESGYRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G GDRSE+IRTYN+ Q R+TDHRI+ + L+ +++G + II+ LL Q + I + Sbjct: 299 A-GHGDRSEKIRTYNYPQDRVTDHRISFSTS-LKPIMEGKLTPIIDALLAEEQNQKIKES 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|300858256|ref|YP_003783239.1| peptide chain release factor RF-1 [Corynebacterium pseudotuberculosis FRC41] gi|300685710|gb|ADK28632.1| peptide chain release factor RF-1 [Corynebacterium pseudotuberculosis FRC41] gi|302205977|gb|ADL10319.1| Peptide chain release factor 1 [Corynebacterium pseudotuberculosis C231] gi|302330530|gb|ADL20724.1| Peptide chain release factor 1 [Corynebacterium pseudotuberculosis 1002] gi|308276212|gb|ADO26111.1| Peptide chain release factor RF-1 [Corynebacterium pseudotuberculosis I19] Length = 356 Score = 232 bits (591), Expect = 7e-59, Method: Composition-based stats. Identities = 144/356 (40%), Positives = 216/356 (60%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE +M++ ++ + KL++ Y+ + PII+ + Q + + + + Sbjct: 7 VDDIVSEYQGIEAQMADPETMGDQMLFRKLSKRYSELQPIINVNNKLVQARDDYEVAKEM 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + E +E E+ LE ++ LL P+D D ++E++AG GG EA Sbjct: 67 AHEDHEFQEEAA-------RLETEVVVLEEQLADLLAPRDPHDGDDIVMEVKAGAGGEEA 119 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + +EVL SS++D GG K++ +I + +S KFE Sbjct: 120 ALFAGELVRMYQRYADKHGFAIEVLDSSESDLGGVKDMTLSIRSKTPSRDGAWSVFKFEG 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E+ +++I +D+RID R+SG GGQ VNT Sbjct: 180 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVAEIEIDDKDLRIDVYRSSGKGGQGVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RAM+VL ARL + ++ E + R QI Sbjct: 240 TDSAVRITHLPTGLVVTCQKERSQIQNKARAMQVLAARLQSMAEEQAEAEAAEGRAAQIR 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI+DHRI L+ VL G +DD+ L A +A+ + + Sbjct: 300 TMDRSERIRTYNWPENRISDHRIGFKANNLDSVLNGELDDLFTALRAAERAERLEA 355 >gi|328907544|gb|EGG27310.1| peptide chain release factor 1 [Propionibacterium sp. P08] Length = 361 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + I +++ R EIE++++ + +L + +A + ++S DQ Sbjct: 1 MSESAQHAIDEIRRRLREIEIQLANPAVLSDPSAMGRLGKRHARLRHVVSVADNVDQLNA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + +++ ++ E LL P D D + ++EI Sbjct: 61 DIEAAEDLANE--DPVFVQEAERLRGQLDLARTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSELTDLGGYRTVVVAVGGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI DIR+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPADIRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + ++++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGEVLDALHADEVRRRMA 353 Query: 354 SASE 357 SE Sbjct: 354 QQSE 357 >gi|46908681|ref|YP_015070.1| peptide chain release factor 2 [Listeria monocytogenes serotype 4b str. F2365] gi|67461157|sp|Q71WR9|RF2_LISMF RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|46881953|gb|AAT05247.1| peptide chain release factor 2, programmed frameshift [Listeria monocytogenes serotype 4b str. F2365] Length = 366 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 184/348 (52%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + ++ R AE+E +M + + + + + ++E++ + Sbjct: 25 DLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + + L+ D D + ILE+ G GG+E Sbjct: 85 LLKEEADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR Sbjct: 140 SQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+THIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 260 VRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +D+ IN L + Sbjct: 320 ---SQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDEFINAYLRSR 364 >gi|7688054|emb|CAB89696.1| putative peptide release factor 2 [Xanthomonas campestris pv. campestris] Length = 374 Score = 232 bits (590), Expect = 8e-59, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 165/344 (47%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + L E + + + I+ + +L + Sbjct: 28 DVKKERLEEVSRELESPDVWNDAERAQALGRERSMLEKTVIGIADVLAGLTDAGELLDLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + ++ + + +LE + D + ++I+AG GG+EA Sbjct: 88 -ESEQDEDTAVAVIADLDKYQAHVEKLEFQRM----FSGQMDGANAFVDIQAGAGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R WK E++ S + G K I G + +K E GVHR+ Sbjct: 143 DWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATIRIEGEYAYGWLKTEIGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +V V PE I++DI D+R D R+SG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT +V + +SQHQNR AMK+L A+LY++E ++ ER A K IG G Sbjct: 263 ITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKRNVERDALEATKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y Q RI D R + + VL G +D+ + L A Sbjct: 321 -SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLKA 363 >gi|163748442|ref|ZP_02155696.1| peptide chain release factor 2 [Shewanella benthica KT99] gi|161332020|gb|EDQ02697.1| peptide chain release factor 2 [Shewanella benthica KT99] Length = 352 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 171/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + S + L +E AA+ I+ I D ++ + L + Sbjct: 15 DAKKERLEEVSRELESSDIWNDPDNAQALGKERAALELIVKTIDDMDTGLEDVEGLVELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D + ++ + + + D + L+I++G+GG+EA Sbjct: 75 IEEADEETFNDASAELDGLDKRLAD-----LEFRRMFSGPHDIANSYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ + D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGDAHDFKPELIEVTAGDVAGIKGATIKFTGEYAFGSLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG+ HTS +V V PE + ++DI D+RIDT RASG+GGQH+N T+SA+R Sbjct: 190 RKSPFDSSGKRHTSFCSVFVYPEIDDTIEIDINPSDLRIDTYRASGAGGQHINKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+NR AMK L+A+LY++E + E+ + + K IG G Sbjct: 250 ITHLPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLKQNEEKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVESRNTQSVLDGGLDMFIEASLK 349 >gi|304386240|ref|ZP_07368573.1| peptide chain release factor RF2 [Pediococcus acidilactici DSM 20284] gi|304327597|gb|EFL94824.1| peptide chain release factor RF2 [Pediococcus acidilactici DSM 20284] Length = 362 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 181/349 (51%), Gaps = 10/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E +M+E + K + + + +K + ++L + Sbjct: 16 DLDALNESISVNEAKMAEPDFWNDQEKAQKIINETNVLKAKYDNFKNLTDHVENLEVTLE 75 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ Q E + +L + LL D + ILEI G GG+E+ Sbjct: 76 LLEMEADP--DVQAEFEDELSQTAKLLRDYRLGLLLNGKYDANNAILEIHPGAGGTESQD 133 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A ++KV++ + G + + G + ++ E GVHR+ R Sbjct: 134 WGSMLLRMYTRWAEQHQFKVQIEDYQAGEVAGISSVTIRVMGHNAYGYLRSEKGVHRLVR 193 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS A+V V+PE ++V+I +D+R+D R+SG+GGQH+N T SAVRI Sbjct: 194 LSPFDSAGRRHTSFASVDVMPELDDSVEVNINPDDLRVDVYRSSGAGGQHINKTSSAVRI 253 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRS 303 TH+PTGI+V + +E+SQ QNR+ AM +L+A+L+++E ++ A E++ Q IG G Sbjct: 254 THLPTGIVVASQAERSQLQNRVTAMNMLKAKLFELEEQKKAEEKAKLEGTQLEIGWG--- 310 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + DHR NL ++ V+ G +DD IN L K Sbjct: 311 SQIRSYVFHPYSMVKDHRTNLETANVQGVMDGDLDDFINAYLQWKLQKR 359 >gi|67461212|sp|Q927Y4|RF2_LISIN RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 366 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 184/348 (52%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + ++ R AE+E +M + + + + + ++E++ + Sbjct: 25 DLDSMEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + + L+ D D + ILE+ G GG+E Sbjct: 85 LLKEEADEDLQAELEKDIKAYVATISE-----FELKLMLSDPYDKNNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR Sbjct: 140 SQDWGSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS +V V+PE EI++++ ED++IDT RA+G+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSVDVMPELDDEIEIEVRTEDLKIDTYRATGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+THIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 260 VRMTHIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 320 ---SQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 364 >gi|183984069|ref|YP_001852360.1| peptide chain release factor 1 PrfA [Mycobacterium marinum M] gi|238690952|sp|B2HQL3|RF1_MYCMM RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|183177395|gb|ACC42505.1| peptide chain release factor 1 PrfA [Mycobacterium marinum M] Length = 357 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 146/340 (42%), Positives = 202/340 (59%), Gaps = 17/340 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L A++E +++ D K +A ++PI++ +++ + Sbjct: 4 PVQTIDVLLAEHADLERALADPELHSRPDEARKAGRRFARLAPIVATYRKLVAAREDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H + + E +E + EL++++ +L P+D D +LE+++G G Sbjct: 64 AHELAA-------TDESFAAEAAELEARVAELDSQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-----SGRGVFSRM 176 G E+ALF DL RMY RYA W V VL + +D GGYK+ I + GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLGETTSDLGGYKDATLAIASKGDTADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E+ +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGEVQIDESDLRIDVYRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +E+SQ QN++RAM+VL ARL + ++ + SA+R Sbjct: 237 GVNTTDSAVRITHLPTGIVVTCQNERSQLQNKIRAMQVLGARLQAIAEEQAMADASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 QI + DRSERIRTYNF + RITDHRI + L+ VL G Sbjct: 297 SQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLDQVLDG 336 >gi|111225294|ref|YP_716088.1| peptide chain release factor 1 [Frankia alni ACN14a] gi|111152826|emb|CAJ64570.1| peptide chain release factor RF-1 [Frankia alni ACN14a] Length = 362 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 146/341 (42%), Positives = 212/341 (62%), Gaps = 17/341 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L AEIE ++++ + K L+ YA ++P++ ++ + + Sbjct: 11 LDGLVAEHAEIEGQLADPAVHNDPAKARALSRRYAQLAPVVDLARELERVEGDL------ 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + EV ++ E+ L + L+P D DD + ILE++AG GG E+ Sbjct: 65 -AAARELAAEDTSFRGEVDDLDVELAGLNERLRAYLVPVDPDDARDAILEVKAGAGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG------VFSRMKFE 179 ALF GDL RMY RYA R WK E+L ++ +D GGY+++ + RG V+ R++FE Sbjct: 124 ALFAGDLLRMYLRYAERRGWKTEILDANPSDLGGYRDVSVAVKARGSAAGDGVYGRLRFE 183 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE++GR+HTSAA V VLPEA E+DV+I D+RID R+SG GGQ VNT Sbjct: 184 GGVHRVQRVPVTESAGRIHTSAAGVLVLPEAEEVDVEIDPNDLRIDVFRSSGPGGQSVNT 243 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V +EKSQ QN+ A+++LRARL V R++ E S R Q+ Sbjct: 244 TDSAVRITHVPTGLVVSCQNEKSQLQNKESALRILRARLLGVAREKAEAEASLARASQVR 303 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 + DRSER+RTYNF++ RI+DHR+ + L+ VL G +D++ Sbjct: 304 TVDRSERVRTYNFAENRISDHRVGYKAHNLDQVLDGELDEV 344 >gi|238897260|ref|YP_002922937.1| peptide chain release factor RF-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229465015|gb|ACQ66789.1| peptide chain release factor RF-2 [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 348 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 175/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + K R EI + + KL +E A + I+ +S +++ ++ L + Sbjct: 11 DEKKERLEEINAELEQPDIWKQPEWAQKLGKERAILQEIVETLSQLEKELKDVSTLLDLA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + I + N + + + +D C L++++G+GG+EA Sbjct: 71 IEAQDRETFNEAVFE-----LEAIDKKLNRLEFRRMFSGKNDFADCYLDLQSGSGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +K E++ SD + G K I+G F ++ E+GVHR+ Sbjct: 126 DWANMLLRMYLRWADSKGFKTEIIEISDGEVAGIKSATLKITGDHAFGWLRTETGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+ V PE ID+DI D+RID RASG+GGQH+N T+SAVR Sbjct: 186 RKSPFDSGARRHTSFASAFVYPELEDNIDIDINPADLRIDVYRASGAGGQHINKTESAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT I+ S++SQH+N+ +A K L+A+LY+ E ++ + + K IG G Sbjct: 246 ITHLPTNIVTQCQSDRSQHKNKEQAFKQLKAKLYEFEMQKKNADKKIMEDNKSDIGWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R L + VL GY+D I L A Sbjct: 304 -SQIRSYILDDSRIKDLRTGLETRNTQAVLDGYLDKFIEASLKA 346 >gi|118469567|ref|YP_889202.1| peptide chain release factor 1 [Mycobacterium smegmatis str. MC2 155] gi|118170854|gb|ABK71750.1| peptide chain release factor 1 [Mycobacterium smegmatis str. MC2 155] Length = 359 Score = 232 bits (590), Expect = 9e-59, Method: Composition-based stats. Identities = 148/357 (41%), Positives = 212/357 (59%), Gaps = 17/357 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L A++E ++++ K+ +A +SPI++ + + + + + Sbjct: 10 IEALLAEHADLERQLADPALHADAGAARKVGRRFAQVSPIVACYRKLEAARGDLEAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D S ++ + ++ EL+N++ LL P+D D +LE+++G GG E+ Sbjct: 70 AADDASFADEVEEL-------TAKVAELDNQLTDLLAPRDPHDADDIVLEVKSGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMY RYA W V +L + +D GGYK+ +I RG V++R+KFE Sbjct: 123 ALFAADLARMYIRYAERHGWTVTLLDETTSDLGGYKDATLSIRSRGDSADGVWARLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE E++ I D+RID R+SG GGQ VNT Sbjct: 183 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVEEVQIDESDLRIDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ + SA+R QI Sbjct: 243 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQAEADASADRASQIR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + DRSERIRTYNF + RI DHRIN + L+ VL G +D +++ L A + + A Sbjct: 303 TVDRSERIRTYNFPENRIADHRINFKAHNLDQVLDGDMDALLDALAAADKQSRLQQA 359 >gi|237807749|ref|YP_002892189.1| peptide chain release factor 2 [Tolumonas auensis DSM 9187] gi|259585231|sp|C4LCN9|RF2_TOLAT RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|237500010|gb|ACQ92603.1| hypothetical protein Tola_0975 [Tolumonas auensis DSM 9187] Length = 365 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 171/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +A+ +++ I + Q ++ + L ++ Sbjct: 28 DAKKERLEEVSAELEQPEVWNEPERAQALGKERSALESVVATIDVLTQGAEDVEMLVSLA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + ++ + + D C ++I++G+GG+EA Sbjct: 88 VEGEDEETFHEAETE-----ADALEKKLVDLEFRRMFSGQHDASDCYMDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ SD D G K +G F ++ E+GVHR+ Sbjct: 143 DWADMVLRMYLRWGEAHGYKPELIECSDGDVAGIKSATIKFTGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS + V PE E +++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGGRRHTSFCSAFVYPEIDEDVEIEINPADLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT + +++SQH+N+ +AMK L+A+LY++E + E+ A K IG G Sbjct: 263 ITHIPTNTVTQCQNDRSQHKNKDQAMKQLKAKLYELEMMKQNAEKQALEETKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLK 362 >gi|302037377|ref|YP_003797699.1| peptide chain release factor 2 [Candidatus Nitrospira defluvii] gi|300605441|emb|CBK41774.1| Peptide chain release factor 2 (RF-2) [Candidatus Nitrospira defluvii] Length = 377 Score = 232 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 109/346 (31%), Positives = 180/346 (52%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + +IE++ S+ K+ AA+ +S+ ++++ + + L Sbjct: 21 DLARMTAELNDIEVKTSQPDFWKDTQAAAKVNRRKAALDRELSRWRDTERRQNDIEALLE 80 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + E+LA + + + LL D + I I G GG+E Sbjct: 81 LALESGD-----AGLEQELLAELEPFEKAVAQFRIELLLSGELDSSNAIFAIHPGAGGTE 135 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE L D+ G K ++SG + +K E+GVHR Sbjct: 136 SQDWAQMLLRMYVRWAEQKGFKVETLDLLAGDEAGIKSATLSVSGPYAYGYLKAEAGVHR 195 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ R HTS A+V V PE ++ V I +D+R+DT RA G+GGQ+VN ++A Sbjct: 196 LVRISPFDANKRRHTSFASVFVYPELEDDVQVVIDDKDLRVDTFRAGGAGGQNVNKVETA 255 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 +RITHIPTGI+V +E+SQ QNR AMK+L+ARL++VE+++ E +A K I G Sbjct: 256 IRITHIPTGIVVQCQNERSQLQNRNGAMKILKARLFEVEQRKKEAEFNAIVGEKKDIAWG 315 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + + DHR + ++ V+ G +D I L Sbjct: 316 ---SQIRSYVFQPYQMVKDHRTGYEVGQVSAVMDGELDGFIEAYLQ 358 >gi|33596662|ref|NP_884305.1| peptide chain release factor 2 [Bordetella parapertussis 12822] gi|81579293|sp|Q7W8T4|RF2_BORPA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|33573363|emb|CAE37347.1| peptide chain release factor 2 [Bordetella parapertussis] Length = 367 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + L E ++ ++ ++ + +L + Sbjct: 30 DAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 +SD + + +V ++++ LE + + + D +C ++I+AG GG+EA Sbjct: 90 -LADSDDATLEAIEHDVDRFQEKLETLE----FRRMFANPADPLNCFVDIQAGAGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K E+L S+ D G K I G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE +V++ D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH P+GI+V +++SQH+NR AM++L+++LY++E + E+ + K +G G Sbjct: 265 ITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 365 >gi|326316598|ref|YP_004234270.1| peptide chain release factor 2 [Acidovorax avenae subsp. avenae ATCC 19860] gi|323373434|gb|ADX45703.1| Peptide chain release factor 2 [Acidovorax avenae subsp. avenae ATCC 19860] Length = 367 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L +E ++S ++ + ++ + +L+ + Sbjct: 30 DAKFERLRTVNASLEDPSVWNDPKKAQELGKEQKSLSAVVVTLDKLTRELADNAELYEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + A ++R L E+ + + + D +C ++I+AG GG+EA Sbjct: 90 KEEGD-----EAGLLTIEAETAKLRPLIEELEFRRMFSNEADPLNCFVDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L R Y +YA + +K V + D G K I G + ++ E+GVHR+ Sbjct: 145 DWAGMLLRQYLKYAERKGFKATVEDETPGDVAGIKSATIKIEGEYAYGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASLFVYPEIDDSIEININPADVRTDTFRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A + LR+RLYD E ++ E+ + K +G G Sbjct: 265 LTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYDFEMRKRMEEQQKLEDTKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 365 >gi|297568438|ref|YP_003689782.1| hypothetical protein DaAHT2_0457 [Desulfurivibrio alkaliphilus AHT2] gi|296924353|gb|ADH85163.1| conserved hypothetical protein [Desulfurivibrio alkaliphilus AHT2] Length = 368 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 173/348 (49%), Gaps = 10/348 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 SH + + R E+E R + D S + I + Q +D Sbjct: 25 SHLDLDNKLLRIQELEHRSAAPNFWDNPEAAAGVQKEQSDLQDTIDNWQQVIDSFEDAEV 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++++ + EV + + + + D + +L I AG GG+E Sbjct: 85 LLELAIAENDHE--TEQEVSRALNSVEQRLAAMELECMFNGEHDASNAMLTIHAGAGGTE 142 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + + E+L D+ G K + + GR + ++ E G+HR Sbjct: 143 AQDWTDILLRMYLRWAEKKGFSTEILDHLPGDEAGTKSVTVLVKGRWAYGYLRSEMGIHR 202 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR HTS A+V + PE I+V+I +D+RIDT RASG+GGQHVN T SA Sbjct: 203 LVRISPFDTGGRRHTSFASVFIFPELDDNIEVEINDKDLRIDTYRASGAGGQHVNKTSSA 262 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 +RITH+P+GI+V +E+SQH+N+ AMK+L+A+LY+ ER E+ K +I G Sbjct: 263 IRITHLPSGIVVQCQNERSQHRNKDTAMKMLKAQLYERERANRKEEQQHLHGDKKEIAWG 322 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y R + DHR N ++ VL G +D I L Sbjct: 323 ---SQIRSYVLQPYRLVKDHRTNHETGNVDNVLDGDLDPFIISYLLWQ 367 >gi|222150753|ref|YP_002559906.1| peptide chain release factor RF-2 [Macrococcus caseolyticus JCSC5402] gi|222119875|dbj|BAH17210.1| peptide chain release factor RF-2 [Macrococcus caseolyticus JCSC5402] Length = 350 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 182/349 (52%), Gaps = 17/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + + E E M++ + K + + ++ + S ++ + + L Sbjct: 9 DLEEKETNIKEYEEMMADPDFWNDGDKAQDIINKNNALKSVVQEFSTLEEGLENSEVLFE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + ++ ++ ++++ N+ +L D + ILE+ G GG+E Sbjct: 69 MYKEESDEDTHQE-----LIEQLNTLQQIANDFELKMLLSGEFDANNAILELHPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R+A + +KVE + D+ G K + I G + +K E GVHR Sbjct: 124 SQDWGEMLLRMYQRFADKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE--DIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS + V PE +++I + DI+IDT RASG+GGQHVNTTDS Sbjct: 184 LVRISPFDSSGRRHTSFVSCEVTPEFDNDNIEIEINSEDIKIDTYRASGAGGQHVNTTDS 243 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 AVRITH PTGI+V +E+SQ +NR +AMK+L+A+LY + + E +A R Q IG Sbjct: 244 AVRITHQPTGIVVTCQNERSQIKNREQAMKMLKAKLYQKKIEEQEAELAAIRGEQKEIGW 303 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 G +IR+Y F + DHR N+ V+ G ID I+ L + Sbjct: 304 G---SQIRSYVFHPYSMVKDHRTNVETGNTNAVMDGDIDLFIDAYLKSQ 349 >gi|56421641|ref|YP_148959.1| peptide chain release factor 2 in translation [Geobacillus kaustophilus HTA426] gi|56381483|dbj|BAD77391.1| peptide chain release factor 2 in translation [Geobacillus kaustophilus HTA426] Length = 327 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 109/332 (32%), Positives = 175/332 (52%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ D + + ++ + S +++ + + ++ + D +L Sbjct: 1 MAAPNFWDDQKSAQAVISEANALKDLVEEFSSLEERFDNLEVTYELLKEEPDDELQAELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EEAKKLMKDFSE-----FELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L ++ G K + I G + +K E GVHR+ R+ +ASGR HT Sbjct: 116 AEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE I+++I E+++IDT R+SG+GGQHVNTTDSAVRITH+PTGI+V Sbjct: 176 SFVSCEVVPELDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AM +L+A+LY + + E + R Q IG G+ +IR+Y F Sbjct: 236 SERSQIKNREKAMNMLKAKLYQKKLEEQQAELAELRGEQKEIGWGN---QIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N+ + ++ V+ G ID I+ L A Sbjct: 293 LVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRA 324 >gi|149183883|ref|ZP_01862274.1| peptide chain release factor 1 [Bacillus sp. SG-1] gi|148848402|gb|EDL62661.1| peptide chain release factor 1 [Bacillus sp. SG-1] Length = 253 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 140/253 (55%), Positives = 190/253 (75%), Gaps = 1/253 (0%) Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 +DDK+ I+E+R GG EAALF GDL+RMY R+A + WK EV+ ++ GGYKEI+ Sbjct: 1 PNDDKNVIMEVRGAAGGDEAALFAGDLYRMYSRFAEAQGWKTEVMEANSTGVGGYKEIIF 60 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 I+G G +S+MK+E+G HRVQRVP TE+ GR+HTS ATVA LPEA E+++DI +DIR+D Sbjct: 61 MINGNGAYSKMKYENGAHRVQRVPETESGGRIHTSTATVACLPEAEEVEIDIHEKDIRVD 120 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T +SG GGQ VNTT SAVR+TH+PTG++V EKSQ +N+ +AMKVLRAR+YD ++ Sbjct: 121 TFASSGPGGQSVNTTMSAVRLTHLPTGVVVSCQDEKSQIKNKEKAMKVLRARVYDKFQRE 180 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + E ANRK +G+GDRSERIRTYNF Q R+TDHRI LT+ KL+ +L+G +D++I+ L+ Sbjct: 181 VQAEYDANRKSAVGTGDRSERIRTYNFPQNRVTDHRIGLTIQKLDQILEGKMDEVIDALI 240 Query: 345 TAHQAKMIGSASE 357 Q+K++ E Sbjct: 241 LEDQSKLLERLEE 253 >gi|148652647|ref|YP_001279740.1| peptide chain release factor 2 [Psychrobacter sp. PRwf-1] gi|148571731|gb|ABQ93790.1| bacterial peptide chain release factor 2 (bRF-2) [Psychrobacter sp. PRwf-1] Length = 325 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 104/331 (31%), Positives = 175/331 (52%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ + K+++E + + +I+ I+ D ++ + + + + + + ++ Sbjct: 1 MASPELWNDPERATKISKEKSQLDAVITTITGLDTTLEDAAAMLELAVEADDEGLLEEVQ 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + L ++ + + D +C ++I++G+GG+EA + L RMY R+ Sbjct: 61 NE-----LNAAQALVEDLEFKRMFDGEMDANNCFVDIQSGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVE++ S G K +SG F ++ E+GVHR+ R +++ HT Sbjct: 116 CESHGFKVEIIEVSAGSVAGVKSASFKVSGDYAFGWLRTETGVHRLVRKSPFDSNNGRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSAVRITH+PTG +V Sbjct: 176 SFAAVFVSPEIDDDFEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTGTVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQH N+ AMK+LRA+LY++E ++ ++ + K +G G +IR+Y R Sbjct: 236 NERSQHGNKATAMKMLRAKLYELEMQKRMEQQQAVEDNKSDVGWG---SQIRSYVLDDSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R + + VL G +D I L A Sbjct: 293 IKDLRTGVETFNTGAVLDGDLDQFIEASLKA 323 >gi|119505213|ref|ZP_01627288.1| tRNA pseudouridine synthase D, TruD [marine gamma proteobacterium HTCC2080] gi|119458904|gb|EAW40004.1| tRNA pseudouridine synthase D, TruD [marine gamma proteobacterium HTCC2080] Length = 347 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 113/343 (32%), Positives = 181/343 (52%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + K+R AE+EL ++E D L +E A++ ++ I D+ + DL + Sbjct: 10 AEKKDRLAEVELELAEPSVWDEPERAQALGKERASLELVVKTIDDLDRGSTDSHDLLEMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + D+ + + ++ +LE + + D + L++++G+GG+EA Sbjct: 70 V-AEDDIDTADMVASDTSDLIAQLEKLE----FRRMFSGEMDPNNAYLDVQSGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +K V+ +S + G K G F ++ E+GVHR+ Sbjct: 125 DWTEMLLRMYLRWGESKGFKARVVEASAGEVAGLKSATVQFEGEYAFGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS A++ V PE + ++DI D+R+DT R+SG+GGQHVNTTDSAVR Sbjct: 185 RKSPFDSGGRRHTSFASIFVSPEIDDNIEIDINPADLRVDTYRSSGAGGQHVNTTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PT +V +E+SQHQN+ AMK LRA+LY++E + + ++ + K IG G Sbjct: 245 ITHEPTNTVVSCQTERSQHQNKDNAMKQLRAKLYELEVLKRSADKQALEDSKADIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 303 -SQIRSYVLDDARIKDLRTQVETRNTQAVLDGDLDKFIEASLK 344 >gi|158334426|ref|YP_001515598.1| peptide chain release factor 1 [Acaryochloris marina MBIC11017] gi|189039957|sp|B0C424|RF1_ACAM1 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|158304667|gb|ABW26284.1| peptide chain release factor 1 [Acaryochloris marina MBIC11017] Length = 363 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 138/342 (40%), Positives = 227/342 (66%), Gaps = 5/342 (1%) Query: 7 KQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ ++ F E+ R+ + + ++ + A++ ++ + +QE D Sbjct: 8 EKLKSVEQTFHELTRRLGDPEVATNPTEFQEVAKARASLEETVNTFEDWKATQQELADAQ 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D + D E++++A +E + +++ LE ++ LLLP+D +D+K+ +LEIRAG GG Sbjct: 68 QMAKDGDEDPELKEMAAMEAAELTEKLDGLETKLKVLLLPRDPNDEKNIMLEIRAGAGGD 127 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+++ GDL R+Y +YA +KW+V++LS S + GG+KE + I G V+S++K+E+GVH Sbjct: 128 EASIWAGDLVRIYSKYAESQKWRVKLLSESGGEMGGFKEAILEIQGERVYSKLKYEAGVH 187 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVPATEASGRVHTS ATVAV+PE +++++I +DI + T R+ G+GGQ+VN ++A Sbjct: 188 RVQRVPATEASGRVHTSTATVAVMPEVDDVEIEIDPKDIEMSTARSGGAGGQNVNKVETA 247 Query: 244 VRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V + H PTGI + + E+SQ QN+ RAM++LRA+LY++E + ++ R+ Q+G+G R Sbjct: 248 VDLVHKPTGIRIFCTEERSQLQNKERAMQILRAKLYEMELQEQQASVTSMRRSQVGTGAR 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 SE+IRTYN+ R TDHR+N + LE VL G I+ I+ + Sbjct: 308 SEKIRTYNYKDNRATDHRLN-QNFPLEKVLVGDIELILETCI 348 >gi|33592241|ref|NP_879885.1| peptide chain release factor 2 [Bordetella pertussis Tohama I] gi|33601278|ref|NP_888838.1| peptide chain release factor 2 [Bordetella bronchiseptica RB50] gi|81578745|sp|Q7VZ35|RF2_BORPE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|81580061|sp|Q7WK44|RF2_BORBR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|33571886|emb|CAE41402.1| peptide chain release factor 2 [Bordetella pertussis Tohama I] gi|33575713|emb|CAE32791.1| peptide chain release factor 2 [Bordetella bronchiseptica RB50] Length = 367 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + L E ++ ++ ++ + +L + Sbjct: 30 DAKSERLQVVNAELEDPAIWNDPKHAQDLGREKKSLEDVVETLTELGSGLADSCELVELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 +SD + + + ++++ LE + + + D +C ++I+AG GG+EA Sbjct: 90 -LADSDDATLEAIEHDADRFQEKLETLE----FRRMFANPADPLNCFVDIQAGAGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K E+L S+ D G K I G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGYLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A+V V PE +V++ D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH P+GI+V +++SQH+NR AM++L+++LY++E + E+ + K +G G Sbjct: 265 ITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 365 >gi|327481446|gb|AEA84756.1| peptide chain release factor 2 [Pseudomonas stutzeri DSM 4166] Length = 370 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 171/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + + + L E A ++ I+ I + +DL + Sbjct: 33 DQKHDRLVEVNRELEDPNVWNKPEYAQSLGRERATLAQIVETIDDLTGSLADSRDLLEMA 92 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + D+ E + + + + D +C L+I+AG+GG+EA Sbjct: 93 AEENDEGAVNDIVAEVERLREILEK-----LEFRRMFSHEMDPNNCYLDIQAGSGGTEAQ 147 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + E++ S+ + G K I G F ++ E GVHR+ Sbjct: 148 DWANILLRMYLRWADKRGFSAEIVELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 207 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 208 RKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 267 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY++E ++ + + K IG G Sbjct: 268 ITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELEMQKRNAASQALEDSKSDIGWG-- 325 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D + L Sbjct: 326 -HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLDGYLEASLKQ 368 >gi|187927990|ref|YP_001898477.1| hypothetical protein Rpic_0895 [Ralstonia pickettii 12J] gi|238691788|sp|B2U8V1|RF2_RALPJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|187724880|gb|ACD26045.1| conserved hypothetical protein [Ralstonia pickettii 12J] Length = 367 Score = 231 bits (589), Expect = 1e-58, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 169/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E++ + + +L E ++ ++ ++ D+ +L + Sbjct: 30 DVKSERLVEVDKELENPEVWNDPKRAQELGREKKSLETVVLALTKLDEDLTGAAELFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D I + + + D +C ++I+AG GG+EA Sbjct: 90 REEGDDETIEAIEADTAGMRAIVEDM-----EFRRMFSGPMDAANCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +Y + +K EVL S+ D G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYCERKGFKTEVLEESEGDVAGIKSASIKVEGEYAFGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++G HTS +++ V PE + ++++ D+R+DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRVDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+V +++SQH+NR AM +L++RLY+ E ++ A K +G G Sbjct: 265 ITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELRKRQAAADAQEAAKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 365 >gi|300312096|ref|YP_003776188.1| peptide chain release factor 2 [Herbaspirillum seropedicae SmR1] gi|300074881|gb|ADJ64280.1| peptide chain release factor 2 (RF-2) protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 170/340 (50%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + ++ + + + L +E ++ I+ + D + + +DL + + Sbjct: 4 EKLEQVNAELEDPNVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELTDARDLFEMAREEK 63 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + I + + + + D +C ++I+AG GG+EA + Sbjct: 64 DEDTIIAIEGDAENLKKMVEEM-----EFRRMFSGPMDANNCFIDIQAGAGGTEAQDWAS 118 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L R Y RY + +K E+L SD + G K + G + ++ E+GVHR+ R Sbjct: 119 MLLRQYLRYCERKGFKAEILEQSDGEVAGIKTATIKVEGEYAYGFLRTETGVHRLVRKSP 178 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S HTS +++ V PE +++I D+R+DT RASG+GGQH+N TDSAVR+TH Sbjct: 179 FDSSNGRHTSFSSLFVYPEVDESFEIEINPADVRVDTYRASGAGGQHINKTDSAVRLTHA 238 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 P+GI+V +++SQH+NR A +LRA+L+++E ++ +E+ + K +G G +I Sbjct: 239 PSGIVVQCQNDRSQHRNRAEAWDMLRAKLFELELRKRMSEQQKLEDSKTDVGWG---HQI 295 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y Q RI D R N + VL G IDD I L Sbjct: 296 RSYVLDQSRIKDLRTNFETGNTKAVLDGDIDDFIAASLKQ 335 >gi|307332073|ref|ZP_07611163.1| serine/threonine protein kinase [Streptomyces violaceusniger Tu 4113] gi|306882296|gb|EFN13392.1| serine/threonine protein kinase [Streptomyces violaceusniger Tu 4113] Length = 830 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 91/346 (26%), Positives = 156/346 (45%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ A +E + + D + + +S + + ++ + DL + Sbjct: 485 DLDKMRADIAVLEEQAAAPSLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFE 544 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A+ E E + L D + ++ +RA GG +AA Sbjct: 545 LAADEGDADARAEAESELEAVRKAVDE--MEVRTLLSGEYDSREALVNVRAEAGGVDAAD 602 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K ++ +S ++ G K + + + E G HR+ R Sbjct: 603 FAEQLQRMYLRWAERHGYKTQIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVR 662 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 663 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 722 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G + Sbjct: 723 THIPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWGNQ 780 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G ID + + + + Sbjct: 781 MRSYVLHPYQMVKDLRTEFEVGNPQAVLDGEIDGFLEAGIRWRKQQ 826 >gi|296111417|ref|YP_003621799.1| peptide chain release factor 2 [Leuconostoc kimchii IMSNU 11154] gi|295832949|gb|ADG40830.1| peptide chain release factor 2 [Leuconostoc kimchii IMSNU 11154] Length = 372 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 182/343 (53%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E RM+E D +K + + + ++ + + +++ +I Sbjct: 25 DLEALTEEIADFENRMTEPGFWDDNVKAQKVIEENNVLKNRRDSFLNLTNQAEEIDVLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + ++ + K +++E LL + D + ILE+ G+GG+E+ Sbjct: 85 MLSEDPDDVEMLAELEENVAKIQKDVEAYNLEQLLTEPYDA-NNAILEVHPGSGGTESTD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A ++V+VL D+ G I+G F ++ E GVHR R Sbjct: 144 WGANLYRMYTRWAQQHGFQVDVLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE I+V++ +DI++D R+ G+GGQ+VN + VR+ Sbjct: 204 ISPFDSAGRRHTSFVSVDVMPELDDTIEVEVRDDDIKMDVFRSGGAGGQNVNKVSTGVRL 263 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V+S+ E++Q+ NR AM++L+ +LY +E ++ ER+A ++ +G + Sbjct: 264 THEPTGIVVSSTVERTQYGNRDYAMRLLKGKLYQLELEKQEAERAALTGEKLENG-WGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + DHR N + + VL G +D IN L Sbjct: 323 IRSYVLHPYQMVKDHRTNYETNQPQQVLDGDLDPFINAYLQWQ 365 >gi|329928717|ref|ZP_08282566.1| peptide chain release factor 2 [Paenibacillus sp. HGF5] gi|328937498|gb|EGG33916.1| peptide chain release factor 2 [Paenibacillus sp. HGF5] Length = 339 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 173/335 (51%), Gaps = 6/335 (1%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 E +M+ D K A ++ + S + Y + + + D +I D E Sbjct: 2 IENFEEKMAAPDFWDDNEKAQALIAEMNSVKSSVDQYQKLQADYDDAVVMIELA--DEEG 59 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 D E+ K++ E LL D + ILE+ G GG+E+ + L RM Sbjct: 60 DDSLAGEIGETIKDLVGRVEEFELQLLLNQPYDKMNAILELHPGAGGTESQDWGQMLHRM 119 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SG Sbjct: 120 YTRWAEKRGFKVETLDYLPGDEAGIKSVTLLIKGFNAYGYLKAEKGVHRLVRISPFDSSG 179 Query: 196 RVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 R HTS + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PTG++ Sbjct: 180 RRHTSFVSCDVVPEINDEVELDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVV 239 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V +E+SQ +NR RAM +LR++LY+ + + E + R Q +IR+Y F Sbjct: 240 VTCQNERSQIKNRERAMTMLRSKLYERKIEEQQKELAEIRGEQ-SDIAWGSQIRSYVFHP 298 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + V+ G +D I+ L + Sbjct: 299 YSMVKDHRTQVETGNIGAVMDGDLDGFIDGYLRSQ 333 >gi|326510949|dbj|BAJ91822.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 411 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 129/353 (36%), Positives = 216/353 (61%), Gaps = 5/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + E+ +R+ + V Y KL + + + +++ + + +++ ++ Sbjct: 53 KLDSTEKAWKEMSIRLGDPDIVSDPGEYQKLAQSVSNLGEVVTAYGEFKECERQIEETKA 112 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ D ++ ++ E+ ++ ++ ELE + LLLP D + ++ +LE+RAGTGG E Sbjct: 113 LQKENGDDPDMAEMIASELESLSDQLAELEERLTVLLLPSDPLNSRNILLEVRAGTGGDE 172 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A ++ GDL RMY+RY L WK + +S S+ + GG+K V + G+ V+S++KFESGVHR Sbjct: 173 AGIWAGDLVRMYQRYCELNNWKFKPVSCSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHR 232 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E+DV I +DI + R+ G+GGQ+VN ++A+ Sbjct: 233 VQRVPQTETMGRVHTSTATVAIMPEADEVDVVIDPKDIELKAARSGGAGGQNVNKVETAI 292 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + + E+SQ QN+ RA ++LRA+LY+++ + R LQ+G+G RS Sbjct: 293 DLIHKPTGIRIFCTEERSQLQNKERAFQLLRAKLYEIKLREQQESIRTQRLLQVGTGARS 352 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ R+TDHR+ + L L G I+ I Q +++ + Sbjct: 353 EKIRTYNYKDNRVTDHRLKMNFI-LSSFLLGDIESAIQSCAALEQKELLEEMA 404 >gi|241662572|ref|YP_002980932.1| hypothetical protein Rpic12D_0960 [Ralstonia pickettii 12D] gi|240864599|gb|ACS62260.1| conserved hypothetical protein [Ralstonia pickettii 12D] Length = 367 Score = 231 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 169/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E++ + + +L E ++ ++ ++ D+ +L + Sbjct: 30 DVKSERLVEVDKELENPEVWNDPKRAQELGREKKSLETVVLALTKLDEDLTGAAELFELA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D I + + + D +C ++I+AG GG+EA Sbjct: 90 REEGDDETIEAIEADTAGMRAIVEDM-----EFRRMFSGPMDAANCFIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +Y + +K EVL S+ D G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYCERKGFKTEVLEESEGDVAGIKSASIKVEGEYAFGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++G HTS +++ V PE + +++I D+R+DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEINPADLRVDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+V +++SQH+NR AM +L++RLY+ E ++ A K +G G Sbjct: 265 ITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELRKRQAAADAQEAAKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 365 >gi|47096102|ref|ZP_00233703.1| peptide chain release factor 2 [Listeria monocytogenes str. 1/2a F6854] gi|258611482|ref|ZP_05232771.2| peptide chain release factor 2 [Listeria monocytogenes FSL N3-165] gi|258612274|ref|ZP_05269486.2| peptide chain release factor 2 [Listeria monocytogenes F6900] gi|293596674|ref|ZP_05263420.2| peptide chain release factor 2 [Listeria monocytogenes J2818] gi|47015563|gb|EAL06495.1| peptide chain release factor 2 [Listeria monocytogenes str. 1/2a F6854] gi|258600468|gb|EEW13793.1| peptide chain release factor 2 [Listeria monocytogenes FSL N3-165] gi|258610392|gb|EEW23000.1| peptide chain release factor 2 [Listeria monocytogenes F6900] gi|293591414|gb|EFF99748.1| peptide chain release factor 2 [Listeria monocytogenes J2818] Length = 338 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 183/344 (53%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 293 QIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 336 >gi|313678884|ref|YP_004056624.1| peptide chain release factor 1 [Mycoplasma bovis PG45] gi|312950243|gb|ADR24838.1| peptide chain release factor 1 [Mycoplasma bovis PG45] Length = 358 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 141/361 (39%), Positives = 228/361 (63%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M +K + ++K + E+ ++ + ++ + + +E A I I K Y+ + Sbjct: 1 MEKTMYKSLSEIKQSYLELLKKVDDPAVINNIKEYSAINKEIAKIREISEKFITYENLLK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + + + A++ + ++ ELE ++ L+LP+D +DDK+ I+EIR Sbjct: 61 DVEQAKLMLESKSDEE--VEFAKMIIDENSLKLEELEEKLKILILPQDENDDKNIIVEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLFRMY ++A +++++LS++ + GG+ +IV +I G +S+ K Sbjct: 119 GAAGGDEANIFAGDLFRMYNKFADELGFRLKILSTNSANAGGFSQIVFSIKGEKAYSKFK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTS TV V+PE + D++I D++ID R+SG+GGQ Sbjct: 179 FESGVHRVQRVPVTESQGRIHTSTTTVTVMPEIDDTVDIEIKPSDLKIDVFRSSGAGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PT I+V + E+SQ NR A+ +L+++LYD+E ++ A+E S RKL Sbjct: 239 VNTTDSAVRITHLPTNIVVTSQDERSQIANRETALTILKSKLYDLEMQKKADEESGYRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 G GDRSE+IRTYN+ Q R+TDHRI+ + L+ +++G + I+ LL Q + I + Sbjct: 299 A-GHGDRSEKIRTYNYPQDRVTDHRISFSTS-LKPIMEGKLTPIVEALLAEEQNQKIKES 356 Query: 356 S 356 Sbjct: 357 G 357 >gi|145589652|ref|YP_001156249.1| peptide chain release factor 2 [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145048058|gb|ABP34685.1| bacterial peptide chain release factor 2 (bRF-2) [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 349 Score = 231 bits (588), Expect = 2e-58, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + D K L +E + +++ ++ + +L + Sbjct: 12 DVKSRRLTEVNSILEDPTIWDDQKKAQALGKEKKLLDGVVATLTDLNTNITGAIELFDMA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + I + Q + +L ++ + + + D +C ++I+AG GG+EA Sbjct: 72 KEESDFETIAAIEQD-----VQSYSKLIGDLEFRRMFHNEMDSCNCFIDIQAGAGGTEAC 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+R Y +Y + +K E+L SD D G K + G + ++ E+GVHR+ Sbjct: 127 DWASMLYRQYLKYCERKGYKTEILEESDGDVAGIKSATIKVDGEYAYGHLRSETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++S HTS A++ V PE + ++D+ DIR DT RASG+GGQH+N TDSAVR Sbjct: 187 RKSPFDSSNGRHTSFASIYVYPEIDDSIEIDVNPADIRTDTYRASGAGGQHINKTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH+PTGI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 247 LTHLPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHEMQKRRAEQDKLEASKTDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 305 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIEASLKQ 347 >gi|25027860|ref|NP_737914.1| peptide chain release factor 1 [Corynebacterium efficiens YS-314] gi|259506251|ref|ZP_05749153.1| peptide chain release factor 1 [Corynebacterium efficiens YS-314] gi|81749553|sp|Q8FQ31|RF1_COREF RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|23493143|dbj|BAC18114.1| putative peptide chain release factor 1 [Corynebacterium efficiens YS-314] gi|259166155|gb|EEW50709.1| peptide chain release factor 1 [Corynebacterium efficiens YS-314] Length = 358 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 143/356 (40%), Positives = 216/356 (60%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + +E +M++ + ++ + Y+ + PII+ Q + + + + Sbjct: 8 VDDILAEYHGLEEQMADPALHNDPAAARRVGKRYSELQPIINVHRQLVQVRDDLEAAREM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + + ++E++ +E+++ +L L P+D D ++EI+AG GG EA Sbjct: 68 AHEDHEFAAEAERLEVELVELEEKLADL-------LAPRDEHDGDDIVMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY++YA + +EVL S+++D GG K+I +I R +S+ KFE Sbjct: 121 ALFAGDLLRMYQKYADKHGFIIEVLDSAESDLGGVKDITLSIRSRQPSRDGAWSQFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E DV+I ++IR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVEDVEIDEKEIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V E+SQ QNR RAM+VL ARL ++++ E + R QI Sbjct: 241 TDSAVRITHLPTGIVVTCQKERSQIQNRARAMQVLAARLQALQKEEADAEAAEGRASQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI+DHRI L+ VL G +DD+ L A +A+ + + Sbjct: 301 TMDRSERIRTYNWPENRISDHRIGFKANNLDAVLNGELDDLFTALRAAERAERLEA 356 >gi|319428670|gb|ADV56693.1| peptide chain release factor [Phaseolus vulgaris] Length = 498 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 129/323 (39%), Positives = 203/323 (62%), Gaps = 9/323 (2%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 ++++ V Y KL + A + ++S + ++ ++ + D +D ++ ++ Sbjct: 138 KLADPDVVSDPKEYQKLAQSVAELDEVVSIYRKFKDCEKHLEEAKALAKDGGNDEDMVEM 197 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + K++ ELE+ + LLLP D D ++ ++E+RAGTGG EA ++ GDL RMYER Sbjct: 198 ISFEIDLLSKQLAELEDNLKVLLLPSDPLDARNIMIEVRAGTGGDEAGIWAGDLVRMYER 257 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y+ WK ++SSS + GG+K V I G V+S++K+ESGVHRVQRVP TEA GRVH Sbjct: 258 YSERNSWKYSLVSSSAAEKGGFKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTEAQGRVH 317 Query: 199 TSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTS 257 TS ATVA++PE E++V I +DI + T R+ G+GGQ+VN ++A+ + H PTGI + + Sbjct: 318 TSTATVAIMPEVDEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLVHKPTGIRIFCT 377 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRIT 317 E++Q +N+ RA ++LRA+LY+++ + RK Q+G+G R+E+IRTYN+ R+T Sbjct: 378 EERTQLKNKNRAFQLLRAKLYEIKLREQQESLRNQRKSQVGTGARAEKIRTYNYKDNRVT 437 Query: 318 DHR--INLTLYKLEYVLQGYIDD 338 DHR N L L G I+D Sbjct: 438 DHRLKTNYE---LTSFLDGDIED 457 >gi|223997436|ref|XP_002288391.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220975499|gb|EED93827.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 366 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 145/357 (40%), Positives = 222/357 (62%), Gaps = 5/357 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ ++ F + R+++ + ++ ++ + + Y Q + E + Sbjct: 7 MKSRLDGIRRSFQALTERLADPDVIADSNLLRQVMKDRSQSEETVQAFDEYCQLETELEG 66 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + D E+R++A+ E+ IE + ELE I LLLPKD +DD++C+LEIRAGTG Sbjct: 67 AQELFQEAGDDVEMREMARSEMKEIEVRLDELETLIKILLLPKDPNDDRNCMLEIRAGTG 126 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 GSEA +F GDL +Y ++ + W+V ++ SS DDGGYK +V + G V+S++K+E+G Sbjct: 127 GSEANIFAGDLLDVYRKFMSAEGWQVSMMDSSPGDDGGYKNVVLEVKGDSVYSKLKWEAG 186 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVPATE GRVHTS ATVA++PE E+DV I +DI + TMR+ G+GGQ+VN + Sbjct: 187 VHRVQRVPATETQGRVHTSTATVAIMPECDEVDVKIDPKDIEMSTMRSGGAGGQNVNKVE 246 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +AV + H PTGI + + E+SQ +N+ AMK+L ARLYD+E ++ E R +QIG+G Sbjct: 247 TAVDLLHKPTGIRIKCTQERSQLKNKELAMKMLMARLYDIENEKREAEERERRGVQIGTG 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RSE+IRTYN+ R++DHR+ + L+ L G + II+ L+ Q + SE Sbjct: 307 GRSEKIRTYNWKDSRVSDHRLG-QNFPLQNFLSGDVGPIIDGLIIKDQEAKLRQLSE 362 >gi|159039554|ref|YP_001538807.1| peptide chain release factor 1 [Salinispora arenicola CNS-205] gi|157918389|gb|ABV99816.1| peptide chain release factor 1 [Salinispora arenicola CNS-205] Length = 362 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 155/365 (42%), Positives = 215/365 (58%), Gaps = 18/365 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +++ L + +A++E R+++ ++ YA + P + E + Sbjct: 1 MSSERLAALLDEYADLEKRLADPAIHADQNMARRVGRRYAELVP-------LHKAASELE 53 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E A+ + LE + LL+P+D D K I+EI+AG Sbjct: 54 QARADLAAAKELAAEDPAFVGEAEAMAAALPALEEGLAELLIPRDPHDAKDVIVEIKAGE 113 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-------RGVF 173 GG E+ALF GDL RMY RYA W VEV+ + D+D GG K++ I GV+ Sbjct: 114 GGEESALFAGDLLRMYTRYAERCGWLVEVIDAQDSDLGGVKDVSLAIKSKGVPEGGNGVW 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+K+E GVHRVQRVP TE+ GR+HTSAA V +LPEA E+DV I ++RID R+SG G Sbjct: 174 SRLKWEGGVHRVQRVPVTESQGRIHTSAAGVLMLPEAEEVDVTIDPNELRIDVFRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI+V +EKSQ QNR +A+++LRARL V +++ S Sbjct: 234 GQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNREQALRILRARLLAVAQEQADAAASDA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 RK Q+ + DRSERIRTYNF Q RITDHRI T Y L+ L G +D ++ L A +A + Sbjct: 294 RKAQVRTVDRSERIRTYNFPQNRITDHRIGYTAYNLDLALAGELDGVLAALAEADRAARL 353 Query: 353 GSASE 357 +E Sbjct: 354 AGEAE 358 >gi|224503251|ref|ZP_03671558.1| peptide chain release factor 2 [Listeria monocytogenes FSL R2-561] Length = 338 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 183/344 (53%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISA-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 293 QIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 336 >gi|319942340|ref|ZP_08016655.1| peptide chain release factor [Sutterella wadsworthensis 3_1_45B] gi|319804213|gb|EFW01113.1| peptide chain release factor [Sutterella wadsworthensis 3_1_45B] Length = 354 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 171/345 (49%), Gaps = 15/345 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + R E+ + + ++++E + I+ + Q + +L Sbjct: 8 DVDRKARRLEEVNREIENPDLWNDPKHAQEVSKEKKMLDDIVGSFNRLTQGIADAGELFE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + ++ +V IE E+ +LE + + D +C LEI++G GG+E Sbjct: 68 L-SLAEEDFDSLEVIGEDVDRIEHEVAQLE----FKRMFNQPMDSANCYLEIQSGAGGTE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY RYA + +KV + + + G K I G + ++ E+G+HR Sbjct: 123 AQDWASMLERMYMRYAERKGFKVTLEEETPGEVAGIKSCTLFIEGEWAYGTLRTETGIHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +A+ R HTS +V V PE + D++I D+ ID RASG+GGQH+ T+SA Sbjct: 183 LVRKSPFDANARRHTSFTSVYVYPEVDDSIDIEINPADLSIDVFRASGAGGQHIQKTESA 242 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 VRI H PTGI+ + ++SQH+NR +AM+ L+A+LY++E ++ ++ K IG G Sbjct: 243 VRIHHKPTGIITICQDDRSQHRNREKAMQQLKAKLYELEMRKRMEAQTKLEESKSDIGWG 302 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q R+ D R + VL G +D I L Sbjct: 303 ---HQIRSYVLDQSRVKDLRTGVETGNTGGVLDGDLDQFIEASLK 344 >gi|297583381|ref|YP_003699161.1| hypothetical protein Bsel_1077 [Bacillus selenitireducens MLS10] gi|297141838|gb|ADH98595.1| hypothetical protein Bsel_1077 [Bacillus selenitireducens MLS10] Length = 366 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 186/347 (53%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + + + + A +E RM++ D + + + + S Y + + +DL Sbjct: 25 DLDEKEAQIASLEDRMADPSFWDNQEEAQKVIGEANALKSYAHTYRELEAAHEDLEVQFG 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D E+ + + ++K + + E + LL D + ILE+ G GG+E+ Sbjct: 85 LLEEENDPEMMADLEAGIEDLQKRLNQFELQ----LLLSGPYDANNAILELHPGAGGTES 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A WKVE L D+ G K + I+G + +K E GVHR+ Sbjct: 141 QDYASMLLRMYTRFAEQMNWKVETLDYLPGDEAGVKSVTLQITGHNAYGHLKAEKGVHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE +I++D+ +++RIDT R+SG+GGQHVNTTDSAV Sbjct: 201 VRISPFDSSGRRHTSFVSCDVMPELNEDIEIDVKPDELRIDTFRSSGAGGQHVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 R+TH+PT +V SE+SQ +NR +AMK+L+A+L+ +E +R E R + +IG G Sbjct: 261 RMTHLPTNTIVSCQSERSQIKNREKAMKMLKAKLFQLEIERQRQEADEIRGEQSEIGWG- 319 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + V+ G + I+ L + Sbjct: 320 --SQIRSYVFHPYNMVKDHRTNKETGNTQAVMDGDLMPFIDAYLRSQ 364 >gi|170725301|ref|YP_001759327.1| hypothetical protein Swoo_0939 [Shewanella woodyi ATCC 51908] gi|238688657|sp|B1KFR6|RF2_SHEWM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|169810648|gb|ACA85232.1| hypothetical protein Swoo_0939 [Shewanella woodyi ATCC 51908] Length = 365 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + S + L +E +A+ ++ I D ++ + L + Sbjct: 28 DAKKERLEEVSAELESSEVWNNPENAQALGKERSALELVVKTIDDMDSGLEDVEGLVELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D + ++ + + + D C L+I++G+GG+EA Sbjct: 88 VEEEDEETFADASSELDALEKRLEE-----LEFRRMFSGPHDISDCYLDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RM+ R+ +K E++ +D D G K +G F ++ E+GVHR+ Sbjct: 143 DWANMVLRMFLRWGEAHDYKPELIEVTDGDVAGIKGATIKFTGEYAFGSLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG+ HTS +V V PE + ++DI D+RIDT RASG+GGQHVN T+SA+R Sbjct: 203 RKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASGAGGQHVNKTESAIR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+NR AMK L+A+LY++E + +++ + K IG G Sbjct: 263 ITHVPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLKQNADKQQAEDAKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDARIKDLRTGVESRNTQSVLDGDLDKFIEASLK 362 >gi|262283020|ref|ZP_06060787.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Streptococcus sp. 2_1_36FAA] gi|262261272|gb|EEY79971.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Streptococcus sp. 2_1_36FAA] Length = 347 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 187/345 (54%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E D I + ++ + + Q + ++ Sbjct: 8 DLEGLEEEIAILENKMTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTDLFDESEILLD 67 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D +++ + ++ +EK + E LL + D+ + ILEI G+GG+EA Sbjct: 68 FLAEDDSVQEELEEKLAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQD 123 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KVEVL D+ G K + + G + +K E GVHR+ R Sbjct: 124 WGDMLLRMYTRFGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVR 183 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 184 ISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRL 243 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G Sbjct: 244 THIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEISWG--- 300 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F+ + DHR + + +++ V+ G +D I+ L Sbjct: 301 SQIRSYVFTPYTMVKDHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 345 >gi|152980486|ref|YP_001352951.1| peptide chain release factor 2 [Janthinobacterium sp. Marseille] gi|166223628|sp|A6SXF4|RF2_JANMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|151280563|gb|ABR88973.1| RF-2 peptide chain release factor [Janthinobacterium sp. Marseille] Length = 367 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + ++ + + + L +E ++ I+ + D + + +DL + Sbjct: 30 DVKSEKLDQVNGELEDPDVWNDQKRAQDLGKEKKSLEAIVHTLIKIDSELNDARDLFEMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + I + +E+ +L + + + + D +C ++I+AG GG+EA Sbjct: 90 REEKDEDTIVAIEND-----AQELLKLVEGMEFRRMFSNPMDANNCFIDIQAGAGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +KVE+L SD + G K + G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLRYCERKGFKVEILEQSDGEVAGIKTATLKVEGDYAYGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS +++ V PE + ++DI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSANGRHTSFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH P+GI+V +++SQH+N+ A +L+A+L+++E + +E+ + K +G G Sbjct: 265 LTHGPSGIVVQCQNDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N + VL G +DD I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNFETGNTKAVLDGDLDDFIAASLKQ 365 >gi|302390246|ref|YP_003826067.1| bacterial peptide chain release factor 2 (bRF-2) [Thermosediminibacter oceani DSM 16646] gi|302200874|gb|ADL08444.1| bacterial peptide chain release factor 2 (bRF-2) [Thermosediminibacter oceani DSM 16646] Length = 365 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 116/348 (33%), Positives = 189/348 (54%), Gaps = 10/348 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +I LK+ A++E + D + ++ + + ++ K++ +DL Sbjct: 19 MRDALEIDRLKSEIAQLEEKTLTPNFWDDAQAAQKILQTLNQLKETVEKFEAIKKKWEDL 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 T+I D + + E+ A +E ++ E+ L + D + IL + AG GG Sbjct: 79 MTLIELGIEDHD--EGLYGEISAEAEEFKKEFEEMRLKTLLRGRYDKNNAILSLHAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V L RMY R+A + +KV+VL ++ G K + G + +K E GV Sbjct: 137 TEAQDWVQMLLRMYTRWAEDKGYKVKVLDMLPGEEAGIKSATILVEGPYAYGYLKSEQGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A+V V+PE + +V+I ED++I+T R+ G+GGQ+VN T+ Sbjct: 197 HRLVRISPFDAAGRRHTSFASVDVIPEIEDDIEVEIKPEDLKIETFRSGGAGGQYVNKTE 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRITHIPTGI+V +E+SQ NR AMK+LRA+L+++ + + + R Q I Sbjct: 257 SAVRITHIPTGIVVTCQNERSQQSNRNTAMKLLRAKLFNLYLEEQQKKINELRGEQKEIA 316 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 G+ +IR+Y F + DHR N+ + ++ V+ G ID IN L Sbjct: 317 WGN---QIRSYVFHPYSLVKDHRTNVEVGNVQAVMDGEIDMFINAYLK 361 >gi|320116558|ref|YP_004186717.1| peptide chain release factor 2 [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319929649|gb|ADV80334.1| Peptide chain release factor 2 [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 368 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 180/350 (51%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 I +K EI+ +MS+ K L ++ A+ ++ + + K ++ Sbjct: 19 MGVSLDIESVKREIEEIDKKMSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDL 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + + +S ++ + +K + L D + IL I AG Sbjct: 79 STLIELGLEEGDESITDEVDKEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 +GG+EA + L RMY R+A + ++VE L ++ G K + I G + +K E Sbjct: 134 SGGTEAQDWAEMLLRMYTRWANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ +A+GR HTS A V VLPE +I+V+I ED++IDT RASG+GGQ+VN Sbjct: 194 AGVHRLVRISPFDAAGRRHTSFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVRITH+PTGI+V SE+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 254 KTESAVRITHLPTGIVVSCQSERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEH 312 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + ++ V+ G ID IN L Sbjct: 313 REAAWGNQIRSYVFQPYTLVKDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 362 >gi|306835871|ref|ZP_07468866.1| peptide chain release factor RF1 [Corynebacterium accolens ATCC 49726] gi|304568236|gb|EFM43806.1| peptide chain release factor RF1 [Corynebacterium accolens ATCC 49726] Length = 358 Score = 230 bits (587), Expect = 2e-58, Method: Composition-based stats. Identities = 148/358 (41%), Positives = 212/358 (59%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M + A+ KL++ YA + PII Q +++ D + Sbjct: 8 VDDIVSEYQGIEMQMGDPEIAGDQQAFRKLSKRYAELRPIIKVNEELTQAREDLADAKEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + E D + + ELE ++ LL P+D D + I+EI+AG GG EA Sbjct: 68 AYEDHDFQEEAD-------RLAASVEELEEKLADLLAPRDEQDSEDIIMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF GDL RMYER+A +K EVL +++D GG K++ + G +S KFE Sbjct: 121 ALFAGDLARMYERFADKIDFKWEVLGLNESDLGGVKDMTISFRAKSPTRDGAWSVFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E++ +I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPEEVESVNIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ E R Q+ Sbjct: 241 TDSAVRITHLPTGLIVTCQKERSQIQNKARALQVLQARLDQMEREAREAEAGEQRASQVR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSER+RTYN+ + RITDHRI L+ VL G + D+I L +A+ + + Sbjct: 301 TMDRSERVRTYNWPENRITDHRIGYKANNLDSVLNGDMQDLIKALQDQERAERLEAEG 358 >gi|294340483|emb|CAZ88864.1| Peptide chain release factor 2 (RF-2) [Thiomonas sp. 3As] Length = 331 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 101/335 (30%), Positives = 174/335 (51%), Gaps = 15/335 (4%) Query: 18 EIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E+ + + + +L E ++ ++ + + +L + + D+ Sbjct: 2 EVAGALEDPQVWNDPKRAQELGRERKSLETVVLGLESLTTALADHSELFEMSREEGDDAT 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + ++ + + + + D +C ++I+AG GG+EA + L R Sbjct: 62 CEAIEADVEKSADEVEA-----LEFRRMFSNPLDPSNCFIDIQAGAGGTEACDWASMLLR 116 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 Y RY + +K EV+ ++ D G + + G + +++ E+GVHR+ R ++S Sbjct: 117 QYLRYCERKGFKTEVMEETEGDVAGIRSATIKVEGDYAYGQLRTETGVHRLVRKSPFDSS 176 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G HTS A+V V PE + ++DI D+R DT RASG+GGQH+N TDSAVR+THIPTGI Sbjct: 177 GGRHTSFASVFVYPEVDDSIEIDINPADVRTDTFRASGAGGQHINKTDSAVRLTHIPTGI 236 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYN 310 +V +++SQH+NR A ++LR+RLY+ E ++ E+ + K +G G +IR+Y Sbjct: 237 VVQCQNDRSQHKNRAEAWQMLRSRLYEHEMRKRMAEQQTLESTKSDVGWG---HQIRSYV 293 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q RI D R N+ + + VL G +D+ I L Sbjct: 294 LDQSRIKDLRTNVEISNTQKVLDGDLDEFITASLK 328 >gi|290892673|ref|ZP_06555665.1| peptide chain release factor 2 [Listeria monocytogenes FSL J2-071] gi|290557733|gb|EFD91255.1| peptide chain release factor 2 [Listeria monocytogenes FSL J2-071] gi|307572036|emb|CAR85215.1| peptide chain release factor 2 [Listeria monocytogenes L99] Length = 338 Score = 230 bits (586), Expect = 2e-58, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 183/344 (53%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 293 QIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 336 >gi|325186400|emb|CCA20906.1| peptide chain release factor 1 putative [Albugo laibachii Nc14] Length = 397 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 164/359 (45%), Positives = 229/359 (63%), Gaps = 9/359 (2%) Query: 6 HKQICDLKNRFAEIELRMSES-PSVDAY--IKLTEEYAAISPIISKISIYDQKKQEEQDL 62 H + L R + ++ + ++ L+ E A ++P ++ I Q +L Sbjct: 37 HTNMNLLLERHKSLSEQLYSPQGKMSSFVLKNLSIELAELTPKVTTIQKLQSTLQTIDEL 96 Query: 63 HTVIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + +D E+ LA+ E+ +++ LE + LLP+D DDK+CILEIRAGT Sbjct: 97 SEILASPSSQNDKELIQLAKEELQEAKEDAIALEKSLTRQLLPRDPADDKNCILEIRAGT 156 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF DL ++Y++ A +R W ++LS S D GG KE V TI GRGV+ + KFES Sbjct: 157 GGEEACLFANDLLKLYQKIAIMRNWHFQILSISHTDLGGCKECVCTIQGRGVYGQTKFES 216 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP + RVHTSA +V VLPE EI++++ +++RID RASGSGGQHVNTT Sbjct: 217 GVHRVQRVPINDV--RVHTSAVSVVVLPEIEEIEMELNPKELRIDVYRASGSGGQHVNTT 274 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITHIPTGI E+SQHQN+ +AM +LRAR+YD R + ++R R LQIGS Sbjct: 275 ESAVRITHIPTGIQAAVQDERSQHQNKAKAMSILRARVYDQMRDQRDSKRHQLRSLQIGS 334 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSASE 357 GDRSERIRTYNF Q R++DHR+N+TLY +E L G + D +++ L+ Q M+ + Sbjct: 335 GDRSERIRTYNFPQSRVSDHRVNVTLYGIERFLNGELMDPLVDALVLDEQNNMLEELQD 393 >gi|300913271|ref|ZP_07130588.1| hypothetical protein Teth561_PD0069 [Thermoanaerobacter sp. X561] gi|300889956|gb|EFK85101.1| hypothetical protein Teth561_PD0069 [Thermoanaerobacter sp. X561] Length = 368 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 180/345 (52%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I +K EI+ +MS+ K L ++ A+ ++ + + K ++ L Sbjct: 24 DIESVKREIEEIDKKMSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLSTLIE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +S ++ + +K + L D + IL I AG+GG+E Sbjct: 84 LGLEEGDESITDEVDKEYKELKKKLED-----LKIKTLLNGLYDKNNAILSIHAGSGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VE L ++ G K + I G + +K E+GVHR Sbjct: 139 AQDWAEMLLRMYTRWANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+GR HTS A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SA Sbjct: 199 LVRISPFDAAGRRHTSFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V SE+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 259 VRITHLPTGIVVSCQSERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAW 317 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + ++ V+ G ID IN L Sbjct: 318 GNQIRSYVFQPYTLVKDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 362 >gi|171463253|ref|YP_001797366.1| peptide chain release factor 2 [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192791|gb|ACB43752.1| peptide chain release factor 2 [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 349 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R EI + + D K L +E + I++ ++ + +L + Sbjct: 12 DVKSRRLTEINSILEDPTIWDDQKKAQALGKEKKLLDGIVATLTDLNTNITSALELFDMA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + I + Q + ++ ++ + + + D +C ++I+AG GG+EA Sbjct: 72 KEESDFETIAAIEQD-----VEGYSKIIGDLEFRRMFHNEMDSCNCFIDIQAGAGGTEAC 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+R Y +Y + +K E+L SD D G K + G + ++ E+GVHR+ Sbjct: 127 DWASMLYRQYLKYCERKGYKTEILEESDGDVAGIKSATIKVDGEYAYGHLRSETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++S HTS A++ V PE + ++++ DIR DT RASG+GGQH+N TDSAVR Sbjct: 187 RKSPFDSSNGRHTSFASIYVYPEIDDSIEIEVNPADIRTDTYRASGAGGQHINKTDSAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 247 LTHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHEMQKRRAEQDKLEASKTDVGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 305 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIEASLKQ 347 >gi|253997054|ref|YP_003049118.1| hypothetical protein Mmol_1687 [Methylotenera mobilis JLW8] gi|253983733|gb|ACT48591.1| hypothetical protein Mmol_1687 [Methylotenera mobilis JLW8] Length = 367 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + D K L +E + +++ + ++ Q+L + Sbjct: 30 ESKSQRLEEVNGLLEDPKIWDDNAKSQALGKEKRTLELVVNTLIHVQGGLKDAQELFEMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D + + + ++ + + D +C +E ++G+GG+EA Sbjct: 90 REENDDDTLLSVEHDSLALEKEIAEM-----EFRRMFSGELDSANCFIEFQSGSGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY + +KVEVL S+ D G K +SG + ++ E+GVHR+ Sbjct: 145 DWANMLLRMYLRYCERKGFKVEVLEESEGDVAGIKGASIKVSGDYAYGTLRTENGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ + HTS A+V + PE + ++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSNAKRHTSFASVQIFPEVDDSIEIDINPADLRVDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT +V +++SQH+NR AM +L+ LY++E + E+ A K IG G Sbjct: 265 ITHIPTNTVVQCQNDRSQHRNREEAMNMLKGALYNLELNKRNQEKQALEDAKTDIGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + + VL G +D I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTGVEIGNTQGVLDGDLDPFITESLKQ 365 >gi|224499863|ref|ZP_03668212.1| peptide chain release factor 2 [Listeria monocytogenes Finland 1988] gi|284802947|ref|YP_003414812.1| peptide chain release factor 2 [Listeria monocytogenes 08-5578] gi|284996088|ref|YP_003417856.1| peptide chain release factor 2 [Listeria monocytogenes 08-5923] gi|284058509|gb|ADB69450.1| peptide chain release factor 2 [Listeria monocytogenes 08-5578] gi|284061555|gb|ADB72494.1| peptide chain release factor 2 [Listeria monocytogenes 08-5923] Length = 338 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 183/344 (53%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISA-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 293 QIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 336 >gi|227501694|ref|ZP_03931743.1| peptide chain release factor 1 [Corynebacterium accolens ATCC 49725] gi|227077719|gb|EEI15682.1| peptide chain release factor 1 [Corynebacterium accolens ATCC 49725] Length = 352 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 149/358 (41%), Positives = 212/358 (59%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + IE++M + A+ KL++ YA + PII Q +++ D + Sbjct: 2 VDDIVSEYQGIEMQMGDPEIAGDQQAFRKLSKRYAELRPIIKVNEELTQAREDLADAKEM 61 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + E D + + ELE ++ LL P+D D + I+EI+AG GG EA Sbjct: 62 AYEDHDFQEEAD-------RLAASVEELEEKLADLLAPRDEQDSEDIIMEIKAGAGGEEA 114 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF GDL RMYER+A +K EVL +++D GG K++ + G +S KFE Sbjct: 115 ALFAGDLARMYERFADKIDFKWEVLGLNESDLGGVKDMTISFRAKSPTRDGAWSVFKFEG 174 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E++ +I +DIR+D R+SG GGQ VNT Sbjct: 175 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPEEVESVNIDDKDIRVDVYRSSGKGGQGVNT 234 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RA++VL+ARL +ER+ E R Q+ Sbjct: 235 TDSAVRITHLPTGLIVTCQKERSQIQNKARALQVLQARLDQMEREAREAEAGEQRASQVR 294 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSER+RTYN+ + RITDHRI L+ VL G + D+I L +A+ + S Sbjct: 295 TMDRSERVRTYNWPENRITDHRIGYKANNLDSVLNGDMQDLIKALQDQERAERLESEG 352 >gi|226225057|ref|YP_002759164.1| peptide chain release factor 2 [Listeria monocytogenes Clip81459] gi|258611946|ref|ZP_05243310.2| peptide chain release factor 2 [Listeria monocytogenes FSL R2-503] gi|293596308|ref|ZP_05230370.2| peptide chain release factor 2 [Listeria monocytogenes FSL J1-194] gi|293596920|ref|ZP_05265609.2| peptide chain release factor 2 [Listeria monocytogenes HPB2262] gi|300764992|ref|ZP_07074980.1| peptide chain release factor 2 [Listeria monocytogenes FSL N1-017] gi|225877519|emb|CAS06233.1| Putative peptide chain release factor 2 [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607352|gb|EEW19960.1| peptide chain release factor 2 [Listeria monocytogenes FSL R2-503] gi|293583807|gb|EFF95839.1| peptide chain release factor 2 [Listeria monocytogenes HPB2262] gi|293594612|gb|EFG02373.1| peptide chain release factor 2 [Listeria monocytogenes FSL J1-194] gi|300514292|gb|EFK41351.1| peptide chain release factor 2 [Listeria monocytogenes FSL N1-017] gi|332312939|gb|EGJ26034.1| Peptide chain release factor 2 [Listeria monocytogenes str. Scott A] Length = 338 Score = 230 bits (586), Expect = 3e-58, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 183/344 (53%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N ++ V+ G +D+ IN L + Sbjct: 293 QIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDEFINAYLRSR 336 >gi|3522941|gb|AAC34223.1| putative peptide chain release factor [Arabidopsis thaliana] Length = 395 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 163/384 (42%), Positives = 244/384 (63%), Gaps = 28/384 (7%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKK--- 56 ++ + +++ +++R A ++ +++ S + + + +E + + I+ K+ Sbjct: 9 LIKIMDQRLSAIEHRNAVLQKLINQPEYSPEEFSRANKELRKLRDSMLLINDLRAKQKVV 68 Query: 57 ----------------------QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 QE L +++ + + D ++ DLA E+ +E + L+ Sbjct: 69 NLLYRIIYLFQRSSLIRFTFCWQEIDGLKSLVSESSDDKDMLDLAVGELDEAVEEEKRLQ 128 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + LLPKD D++ CILE+RAGTGG EA+LF D+FRMYERY+ + WK +++ ++ Sbjct: 129 TLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDIVDITE 188 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID 214 +D GYKE A I G V+ ++KFESG+HRVQR+P TE SGR+HTSA +VA+LP+A E+D Sbjct: 189 SDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQADEVD 248 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVL 273 V + ED+RIDT R+ GSGGQH NTT+SAVRI H+PTG+MV+ E+SQH NR +A+KVL Sbjct: 249 VQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMNRAKALKVL 308 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 ARLY++ER R+ + RS R QIGSGDRS RIRTYNF QGR+TDHR+ +T + +E ++Q Sbjct: 309 CARLYEIERLRIQSSRSKLRSDQIGSGDRSGRIRTYNFPQGRVTDHRVGITHHAIEDMMQ 368 Query: 334 GY-IDDIINPLLTAHQAKMIGSAS 356 G +D I+ LL + I S S Sbjct: 369 GENLDMFIDALLLRQEMDAIASFS 392 >gi|301094068|ref|XP_002997878.1| peptide chain release factor 1 [Phytophthora infestans T30-4] gi|262109801|gb|EEY67853.1| peptide chain release factor 1 [Phytophthora infestans T30-4] Length = 366 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 164/359 (45%), Positives = 236/359 (65%), Gaps = 12/359 (3%) Query: 8 QICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ L R+ E+ +S + S D L+ E A + P + + +++ ++L Sbjct: 8 QMDLLGRRYDELAHELSHNDGSFSSDKITNLSIEMAELEPKVIAVRELQSQEKAVEELDE 67 Query: 65 VIGDHNSDSEI-----RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +I + E R +A+ E + + I LE E+ L+LP+D DDKS ILEIRAG Sbjct: 68 MINEQADSDEPDALELRHMAEEERRELLEAIINLEGEVVRLMLPRDEADDKSSILEIRAG 127 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 +GG EA LF GD+ +MY++ A + WK E++S S+ D GG KE V +++GRG + RMKFE Sbjct: 128 SGGDEACLFAGDILKMYQKVALAKGWKFELMSISETDLGGVKECVCSLTGRGAYGRMKFE 187 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP + RVHTSA +V VLPEA E++V+I +D+RID RASG+GGQHVNT Sbjct: 188 SGVHRVQRVPVNDV--RVHTSAVSVVVLPEAEEVEVEIDPKDLRIDVYRASGAGGQHVNT 245 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITHIPTGI+ E+SQHQN+ +A+K+LRAR++D R++ ER R Q+G Sbjct: 246 TESAVRITHIPTGIVAAVQDERSQHQNKAKALKILRARVFDGIRRKRDAERQTMRNSQVG 305 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRSER+RTYNF Q R++DHR+N+T++ +E +L G +D+I++ L+ Q ++ Sbjct: 306 SGDRSERVRTYNFPQSRVSDHRVNVTVFGIERMLNGELLDEIVDALVVDEQNLLLQQLE 364 >gi|212697120|ref|ZP_03305248.1| hypothetical protein ANHYDRO_01686 [Anaerococcus hydrogenalis DSM 7454] gi|212675895|gb|EEB35502.1| hypothetical protein ANHYDRO_01686 [Anaerococcus hydrogenalis DSM 7454] Length = 263 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 146/262 (55%), Positives = 192/262 (73%), Gaps = 1/262 (0%) Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 + LL+P+D +D K I+EIRAG GG EA LF G+L+RMY YA + +K E + S Sbjct: 1 MKILLIPQDPNDHKDVIVEIRAGAGGEEAGLFAGNLYRMYHMYADKQNYKTEDIDVSSQG 60 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 GG KE + G G +S++K+ESGVHRVQRVP TE+ GR+HTS ATVAVLPEA E+D+ Sbjct: 61 IGGMKEATFIVRGEGAYSKLKYESGVHRVQRVPETESGGRIHTSTATVAVLPEADEVDIK 120 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I DIR D R+SG+GGQ VNTTDSAVR+THIPTG++V EKSQ +N+ +AM+VLRA Sbjct: 121 IDPNDIRTDVYRSSGNGGQSVNTTDSAVRLTHIPTGLVVTCQDEKSQIKNKDKAMRVLRA 180 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY 335 RLY++E ++ E S NRK Q+G+GDRSERIRTYN+ QGRITDHRIN T+Y+L+ L G Sbjct: 181 RLYEMEEEKRQKEISDNRKSQVGTGDRSERIRTYNYPQGRITDHRINKTIYQLDDFLDGN 240 Query: 336 IDDIINPLLTAHQAKMIGSASE 357 I+++I+ L+T Q + + + E Sbjct: 241 IEEMIDSLITEDQTRKLKTMGE 262 >gi|260906196|ref|ZP_05914518.1| peptide chain release factor 1 [Brevibacterium linens BL2] Length = 359 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 139/366 (37%), Positives = 199/366 (54%), Gaps = 18/366 (4%) Query: 3 FLSHKQICD----LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQK 55 + L + A ++ +S+ KLT YA + + + Q Sbjct: 1 MADDDTLKASVSALLDEHARLQSELSDPAVHADAGRAKKLTRRYAELDKVAVTARHFAQL 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +++ ++ E + E ++E E+ LL+P D DD + I+E Sbjct: 61 EEDA-------AAAEELADDDAEFGAEAKRLHAEAADVETELRDLLVPSDPDDARDAIIE 113 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA--TISGRGVF 173 I+AG GG E+ALF GDL RMY+R+ R W ++L ++ +D GGYK++ G + Sbjct: 114 IKAGEGGDESALFAGDLLRMYQRWIDSRGWSSQILDATHSDLGGYKDVTLALKAKDDGAY 173 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGS 232 +KFE GVHRVQRVP TE+ GR+HTSAA V V PE E + D+RID R+SG Sbjct: 174 GWVKFEGGVHRVQRVPVTESQGRIHTSAAGVLVFPEVDEPEEVALDDNDLRIDVYRSSGP 233 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQ VNTTDSAVRITH+PTGI +EKSQ QN+ A+++LRAR+ + + A E + Sbjct: 234 GGQSVNTTDSAVRITHVPTGITASCQNEKSQLQNKEAALRMLRARILAKQAEEAAAEAAD 293 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+ Q+ + DRSERIRTYNF + RITDHR Y L+ VL G +D +I A +A Sbjct: 294 IRRSQVRTVDRSERIRTYNFPENRITDHRTGYKAYNLDQVLAGELDPVIGSCREADKAAR 353 Query: 352 IGSASE 357 + + + Sbjct: 354 LDALGD 359 >gi|218291021|ref|ZP_03495062.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius LAA1] gi|218239039|gb|EED06244.1| peptide chain release factor 2 [Alicyclobacillus acidocaldarius LAA1] Length = 342 Score = 230 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 173/339 (51%), Gaps = 7/339 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D + + + ++ + S + + + QD + + + A+ Sbjct: 1 MAAPDFWDDPDRAQKIISEMNGVKSVVDTMRRLESLLQDAEVALQLAQEEDDHDLFAEAN 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 LA + + E ++ D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 RLAEQLKSEMDE--FELQVMLSGEYDKNNAILELHPGAGGTESQDWASMLLRMYTRWAED 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL ++ G K + I G + +K E GVHR+ R+ +ASGR HTS A Sbjct: 119 HGYKVEVLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHTSFA 178 Query: 203 TVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 +V V+PE + ++I E++RIDT R++G+GGQHVNTTDSAVRITHIPTGI+V SE Sbjct: 179 SVDVIPEIAEDDDSIEIRPEELRIDTYRSTGAGGQHVNTTDSAVRITHIPTGIVVTCQSE 238 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ QNR RAM++L++RL R+ E + R Q +IR+Y F + D Sbjct: 239 RSQIQNRARAMEILKSRLAAKRREEREQELAQLRGEQ-KEIAWGSQIRSYVFHPYSLVKD 297 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 HR N + V+ G ID I+ L A+ +E Sbjct: 298 HRTNYETSNTQAVMDGEIDPFIHAYLRWQLAREQQRENE 336 >gi|118619169|ref|YP_907501.1| peptide chain release factor 1 [Mycobacterium ulcerans Agy99] gi|166223575|sp|A0PUL1|RF1_MYCUA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|118571279|gb|ABL06030.1| peptide chain release factor 1 PrfA [Mycobacterium ulcerans Agy99] Length = 357 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 145/340 (42%), Positives = 201/340 (59%), Gaps = 17/340 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L A++E +++ D K +A ++ I++ +++ + Sbjct: 4 PVQTIDVLLAEHADLERALADPELHSRPDEARKAGRRFARLARIVATYRKLVAAREDLET 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 H + S E +E + EL++++ +L P+D D +LE+++G G Sbjct: 64 AHELAATDES-------FVAEAAELEARVAELDSQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-----SGRGVFSRM 176 G E+ALF DL RMY RYA W V VL + +D GGY++ I + GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLGETTSDLGGYRDATLAIASKGDTADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE E+ +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGEVQIDESDLRIDVYRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +E+SQ QN++RAM+VL ARL + +R + SA+R Sbjct: 237 GVNTTDSAVRITHLPTGIVVTCQNERSQLQNKIRAMQVLGARLQAIAEERAMADASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 QI + DRSERIRTYNF + R+TDHRI + L+ VL G Sbjct: 297 SQIRTVDRSERIRTYNFPENRVTDHRIGYKSHNLDQVLDG 336 >gi|116494437|ref|YP_806171.1| protein chain release factor B [Lactobacillus casei ATCC 334] gi|227535599|ref|ZP_03965648.1| peptide chain release factor RF2 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239631186|ref|ZP_04674217.1| peptide chain release factor 2 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|301065947|ref|YP_003787970.1| protein chain release factor B [Lactobacillus casei str. Zhang] gi|116104587|gb|ABJ69729.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus casei ATCC 334] gi|227186729|gb|EEI66796.1| peptide chain release factor RF2 [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|239525651|gb|EEQ64652.1| peptide chain release factor 2 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|300438354|gb|ADK18120.1| Protein chain release factor B [Lactobacillus casei str. Zhang] gi|327381888|gb|AEA53364.1| Peptide chain release factor 2 [Lactobacillus casei LC2W] gi|327385049|gb|AEA56523.1| Peptide chain release factor 2 [Lactobacillus casei BD-II] Length = 368 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 110/352 (31%), Positives = 171/352 (48%), Gaps = 12/352 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH-- 63 H + L R E E RM+E D + + + K + + E +DL Sbjct: 20 HFDLDALNERITENEGRMAEPGFWDDSEAAQKVIDNNNALKEKHDRFYALENELEDLEAG 79 Query: 64 -TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D ++ EK + LL D + ILEI G GG Sbjct: 80 FELLQDEPDKDLQQEEEAKIKDLQEKLDK-----YEMQLLLNGPYDHNNAILEIHPGAGG 134 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY+R+A +KVEV D+ G K + I+G + +K E GV Sbjct: 135 TESQDWGSMLMRMYQRWADQNGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGV 194 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++GR HTS A+V V+PE I+VD+ EDI+++ R+SG+GGQH+N T Sbjct: 195 HRLVRISPFDSAGRRHTSFASVDVMPELDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTS 254 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+ H+PTGI+ + +++SQ QN+ AM +L+A+LY E + + A + Q Sbjct: 255 SAVRLIHLPTGIVTSSQAQRSQFQNKATAMAMLKAKLYQREEEAKRAKAKAIQGEQ-KDV 313 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + DHR N V+ G ++ IN L A+ Sbjct: 314 AFGSQIRSYVFHPYTMVKDHRTNYETGNGNAVMDGDLNPFINAYLQWELAQK 365 >gi|77359475|ref|YP_339050.1| peptide chain release factor 2 [Pseudoalteromonas haloplanktis TAC125] gi|123589557|sp|Q3ILD8|RF2_PSEHT RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|76874386|emb|CAI85607.1| peptide chain release factor 2 (RF-2) [Pseudoalteromonas haloplanktis TAC125] Length = 365 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 178/341 (52%), Gaps = 15/341 (4%) Query: 12 LKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R E+ + +S + L E +A+ ++ I + + L + + Sbjct: 30 KQERLEEVNAELEDSAVWNEPERAQALGREKSALEAVVETIDTLVTGTDDVEGLLELAVE 89 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E D AQ E+ + +++ LE + + D L++++G+GG+EA + Sbjct: 90 AE-DQETFDEAQSELADLNEQLEALE----FRRMFSGPHDSNDAYLDLQSGSGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ + +KVE++ ++ D G K G + ++ E+GVHR+ R Sbjct: 145 CNILLRMYLRWGEAKGFKVELVEATGGDVAGIKGATVRFVGEYAYGWLRTETGVHRLVRK 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS A+ V PE I++D+ D+RID RASG+GGQHVNTT+SAVRIT Sbjct: 205 SPFDSSGRRHTSFASAFVYPEVDDNIEIDMNPSDLRIDVYRASGAGGQHVNTTESAVRIT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSE 304 H+PT +V +E+SQH+N+ +AMK L+A+L+++E ++ E+ + K IG G Sbjct: 265 HVPTNTVVQCQNERSQHKNKAQAMKQLKAKLFELELQQQNAEKQTQEDSKSDIGWG---S 321 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 322 QIRSYVLDDARIKDLRTGVESRNTQSVLDGNLDKFIEASLK 362 >gi|281208935|gb|EFA83110.1| peptide chain release factor 1 [Polysphondylium pallidum PN500] Length = 463 Score = 230 bits (585), Expect = 4e-58, Method: Composition-based stats. Identities = 155/353 (43%), Positives = 221/353 (62%), Gaps = 4/353 (1%) Query: 6 HKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + N++ ++ M S + + + + I + Y + ++L Sbjct: 107 QNKLKMMSNKYTTLKSLMESQTLSQEDIKRTSNDAQQIEESVQLFRQYVNEIGNIKELKM 166 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D + R++ ++ A+ +++ LE + Y LLP D DDD + I+EIRAGTGG E Sbjct: 167 ML-DMEKEEASREMIIEDLKAMGEQLAALEKSLIYSLLPADKDDDGNAIIEIRAGTGGGE 225 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LF ++FRMYE YAA + W+ E L S D GG +E A ISG+GVF +K ESGVHR Sbjct: 226 AQLFAHEMFRMYEGYAATKGWRFESLDISYTDVGGCREASAAISGKGVFGFLKNESGVHR 285 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQR+P TE GR+HTS TVA++PE E+D+ I D++ID R+SG+GGQ VNTTDSAV Sbjct: 286 VQRIPDTETQGRIHTSTTTVAIMPEPKEVDIKINDRDLKIDVFRSSGNGGQSVNTTDSAV 345 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RI H+PTGI V+ E+SQ QN+ +AMKVLRARLY++ER R+ ERSA R QIG RS Sbjct: 346 RIVHLPTGITVSMQDERSQLQNKSKAMKVLRARLYEMERVRLQTERSAERNSQIGGATRS 405 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 ERIRTYNF Q R+TDHR+N+T ++ ++ G + D I ++ Q K + + Sbjct: 406 ERIRTYNFPQDRVTDHRVNITTNDIDAIMTGETLGDFIEDIMLQFQTKDLNNL 458 >gi|320533186|ref|ZP_08033906.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 171 str. F0337] gi|320134600|gb|EFW26828.1| peptide chain release factor 1 [Actinomyces sp. oral taxon 171 str. F0337] Length = 340 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 140/343 (40%), Positives = 196/343 (57%), Gaps = 19/343 (5%) Query: 24 SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 ++ ++ +L YA + ++S + + D+ + + D + Sbjct: 4 ADPGAM---RRLGRRYAELGRVVSAYRAWQAASADLADVRELAAE---DEDFAAEVPALE 57 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 A L +L+P+D DD + I+E++AG GG E+ALF DL RMY RYA + Sbjct: 58 TAEAAAGEHL----REVLVPRDPDDARDVIIEVKAGEGGEESALFASDLARMYSRYAERQ 113 Query: 144 KWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESGVHRVQRVPATEASGR 196 W VEVL ++D+D GGYK++ I GV++ +K+E GVHRVQRVP TE+ GR Sbjct: 114 GWAVEVLDATDSDLGGYKDVRLAIKTRGPTEPQDGVWAHLKYEGGVHRVQRVPVTESQGR 173 Query: 197 VHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 +HTSAA V V+PEA + I D+RID R+SG GGQ VNTTDSAVRITH+PTGI+V Sbjct: 174 IHTSAAGVLVMPEADDPGELQIDAADLRIDVFRSSGPGGQSVNTTDSAVRITHLPTGIVV 233 Query: 256 T-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 + +EKSQ QN+ AM+VLRARL A E + R+ Q+ + DRSERIRTYNF + Sbjct: 234 SMQNEKSQLQNKEAAMRVLRARLLAERAAAAAAEAAQARRSQVRTVDRSERIRTYNFPEN 293 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RI DHR Y L+ VL G + +I + +A+ + E Sbjct: 294 RIADHRTGFKAYNLDAVLDGDLGPVIASAIAMDEAERLSQVGE 336 >gi|315080405|gb|EFT52381.1| peptide chain release factor 1 [Propionibacterium acnes HL078PA1] Length = 361 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 204/364 (56%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R V+ Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPVYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|160898706|ref|YP_001564288.1| peptide chain release factor 2 [Delftia acidovorans SPH-1] gi|160364290|gb|ABX35903.1| peptide chain release factor 2 [Delftia acidovorans SPH-1] Length = 386 Score = 229 bits (584), Expect = 4e-58, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 167/344 (48%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L +E + ++ + + + +L + Sbjct: 49 DAKYERLRTVNASLEDPSVWNDPKKAQELGKEKKLLDGVVLTLQKLTTELADNAELFEMS 108 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + +++ L E+ + + D +C ++I+AG GG+EA Sbjct: 109 KEEGD-----ETGLLTIEGETAKLQPLIEELEFRRMFGKEADPLNCFVDIQAGAGGTEAC 163 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L R Y +YA + +K V + D G K I G + ++ E+GVHR+ Sbjct: 164 DWAGMLLRQYLKYAERKGFKATVEEETPGDIAGIKSATIHIEGEYAYGLLRTETGVHRLV 223 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + ++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 224 RKSPFDSSGGRHTSFASLFVYPEIDDSIQIEINPSDVRTDTYRASGAGGQHINKTDSAVR 283 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH+PTGI+V +SQH NR A + LR++LY+ E ++ E+ + K +G G Sbjct: 284 LTHMPTGIVVQCQDGRSQHSNRDVAWQRLRSKLYEHEMQKRMVEQQKLEDTKTDVGWG-- 341 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 342 -HQIRSYVLDNSRIKDLRTNVEISATQKVLDGDLDAFIEASLKQ 384 >gi|226941341|ref|YP_002796415.1| PrfB [Laribacter hongkongensis HLHK9] gi|226716268|gb|ACO75406.1| PrfB [Laribacter hongkongensis HLHK9] Length = 368 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R E+ + + + +L E A+ ++ I + ++L + Sbjct: 31 DGKKDRLEEVSRLVEDPTIWEDPKRAQELGREKKALEDVVLVIDSILSTLADSRELFDMG 90 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + + + + + + + D SC ++I++G GG+EA Sbjct: 91 RAEEDDDTVLAVR-----DDLAGVETRLEMLEFRRMFSNPMDPNSCFVDIQSGAGGTEAQ 145 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY + +KVEV+ S+ + G K + G + ++ E+GVHR+ Sbjct: 146 DWASMLERMYLRYCERKNFKVEVIEESEGEVAGIKSATLKVEGEYAYGFLRTETGVHRLV 205 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R TS A+V V PE + ++DI D+RIDT RASG+GGQH+N TDSAVR Sbjct: 206 RNSPFDSNNRRQTSFASVFVYPEVDDSIEIDINPADLRIDTYRASGAGGQHINKTDSAVR 265 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+V +++SQH+NR AM +L+ARL+++E ++ E+ + K +G G Sbjct: 266 ITHLPTNIVVQCQNDRSQHKNRAEAMSMLKARLFELELRKRNEEKQALEDTKTDVGWG-- 323 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F Q R+ D R + + ++ V+ G +D I L Sbjct: 324 -HQIRSYVFDQSRVKDLRTLVEVGNVKGVMDGDLDGFIEASLKQ 366 >gi|157373979|ref|YP_001472579.1| peptide chain release factor 2 [Shewanella sediminis HAW-EB3] gi|157316353|gb|ABV35451.1| peptide chain release factor 2 [Shewanella sediminis HAW-EB3] Length = 352 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 173/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L +E +++ I+ I D ++ QDL + Sbjct: 15 DAKKERLEEVCAELESAEVWSNPENAQALGKERSSLEVIVKTIDDMDSGLEDVQDLVELA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D + ++ + + + D C L+I++G+GG+EA Sbjct: 75 VEEDDEETFDDASTELDGLEKRLEE-----LEFRRMFSGPHDVADCYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RM+ R+ +K E++ +D D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMFLRWGDAHDYKPELIEVTDGDVAGIKGATIKFTGEYAFGSLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG+ HTS +V V PE + ++DI D+RIDT RASG+GGQHVN T+SA+R Sbjct: 190 RKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASGAGGQHVNKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH+NR AMK L+A+LY++E + + + + K IG G Sbjct: 250 ITHVPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLKQNADKQAAEDSKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVESRNTQSVLDGDLDKFIEASLK 349 >gi|254821298|ref|ZP_05226299.1| peptide chain release factor 1 [Mycobacterium intracellulare ATCC 13950] Length = 357 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 148/340 (43%), Positives = 203/340 (59%), Gaps = 17/340 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + I L A++E R+++ + D K +A ++PI+ +++ + Sbjct: 4 PVQTIDVLLAEHADLERRLADPELHSNPDEARKAGRRFARLAPIVGTYRKLMAAREDLEA 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + D +S E +E + EL+ ++ +L P+D D +LE+++G G Sbjct: 64 ARELAADDDS-------FAAEASDLESRVAELDTQLTDMLAPRDPHDADDIVLEVKSGEG 116 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRM 176 G E+ALF DL RMY RYA W V VL + +D GGYK+ +I+ GV+SRM Sbjct: 117 GEESALFAADLARMYIRYAERHGWTVTVLDETTSDLGGYKDATLSIASKGDSADGVWSRM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 KFE GVHRVQRVP TE+ GRVHTSAA V V PE EI +V I D+RID R+SG GGQ Sbjct: 177 KFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEIGEVQIDESDLRIDVYRSSGKGGQ 236 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVRITH+PTGI+V +E+SQ QN+ RA++VL ARL + ++ + SA+R Sbjct: 237 GVNTTDSAVRITHLPTGIVVTCQNERSQLQNKARALQVLAARLQSLAEEQALADASADRA 296 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 QI + DRSERIRTYNF + RI DHRIN + L+ VL G Sbjct: 297 SQIRTVDRSERIRTYNFPENRIADHRINFKSHNLDQVLDG 336 >gi|212640382|ref|YP_002316902.1| protein chain release factor B [Anoxybacillus flavithermus WK1] gi|212561862|gb|ACJ34917.1| Protein chain release factor B [Anoxybacillus flavithermus WK1] Length = 329 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 171/331 (51%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ D + + ++ + +++ + + + ++ + + ++L Sbjct: 1 MAAPDFWDDQKAAQSVISEANALKDLVGEFRSLEERFENLEVTYELVKEEPDEELQKELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 AEAKKLSKDFSE-----FELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L ++ G K + I G + +K E GVHR+ R+ +ASGR HT Sbjct: 116 AEKKGYKVETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++D+ ++I++DT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 176 SFVSCEVVPEFDDNIEIDVRPDEIKVDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AM +L+A+LY + + E + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREKAMNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + ++ V+ G ID I+ L Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDVFIDAYLR 323 >gi|196249386|ref|ZP_03148084.1| peptide chain release factor 2 [Geobacillus sp. G11MC16] gi|196211143|gb|EDY05904.1| peptide chain release factor 2 [Geobacillus sp. G11MC16] Length = 327 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 172/332 (51%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ D + + ++ + ++ + + ++ + D +L Sbjct: 1 MAAPGFWDDQKAAQAIISEANALKELVGEFESLAERFDNLEVTYELLKEEPDDELQAELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EEAKKLTKDFSQ-----FELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L ++ G K + I G + +K E GVHR+ R+ +ASGR HT Sbjct: 116 AEKKGFKVETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I E+++IDT R+SG+GGQHVNTTDSAVRITH+PTGI+V Sbjct: 176 SFVSCEVVPEMDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +A+ +L+A+LY + + E + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREKAINMLKAKLYQKKMEEQQAELAELRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N+ + ++ V+ G ID I+ L A Sbjct: 293 LVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRA 324 >gi|260577564|ref|ZP_05845503.1| peptide chain release factor 1 [Corynebacterium jeikeium ATCC 43734] gi|258604288|gb|EEW17526.1| peptide chain release factor 1 [Corynebacterium jeikeium ATCC 43734] Length = 358 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 208/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ + +E+++S+ + K+ + ++ + PII +Q +++ + + Sbjct: 8 IDDILAEYQGLEMQLSDPELHNDPAAARKVGKRFSELQPIIQTHQKLEQAREDHEAASEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E + E+ +E+++ +L L P+D D ++EI++G GG EA Sbjct: 68 AAEDKEFAEEAKRLEEEIGELEEQLTDL-------LAPRDPHDGDDIVMEIKSGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + E+L ++ D GG K++ +I + +S KFE Sbjct: 121 ALFAGELARMYQRYAERHGFSTEILGLNETDLGGVKDMTLSIRSKQPSRDGAWSEFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQR+P TE+ GR+ TSAA V V PE E DV I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRIPVTESQGRIQTSAAGVLVYPEPDEVEDVHIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PT I+V E+SQ QNR RAM+VL ARL ++ + E + R QI Sbjct: 241 TDSAVRITHLPTNIVVTCQKERSQIQNRARAMQVLAARLQQLKEEEAEAEAAEGRAAQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + R++DHRI L+ VL G ++ ++ L A +A+ + + Sbjct: 301 TMDRSERIRTYNFPESRVSDHRIGYKANNLDSVLDGDLEALLAALKEADRARRLEA 356 >gi|50842731|ref|YP_055958.1| peptide chain release factor 1 [Propionibacterium acnes KPA171202] gi|289425142|ref|ZP_06426919.1| peptide chain release factor 1 [Propionibacterium acnes SK187] gi|295130812|ref|YP_003581475.1| peptide chain release factor 1 [Propionibacterium acnes SK137] gi|50840333|gb|AAT83000.1| peptide chain release factor 1 [Propionibacterium acnes KPA171202] gi|289154120|gb|EFD02808.1| peptide chain release factor 1 [Propionibacterium acnes SK187] gi|291375831|gb|ADD99685.1| peptide chain release factor 1 [Propionibacterium acnes SK137] gi|313764216|gb|EFS35580.1| peptide chain release factor 1 [Propionibacterium acnes HL013PA1] gi|313772062|gb|EFS38028.1| peptide chain release factor 1 [Propionibacterium acnes HL074PA1] gi|313791908|gb|EFS40009.1| peptide chain release factor 1 [Propionibacterium acnes HL110PA1] gi|313810262|gb|EFS47983.1| peptide chain release factor 1 [Propionibacterium acnes HL083PA1] gi|313812711|gb|EFS50425.1| peptide chain release factor 1 [Propionibacterium acnes HL025PA1] gi|313816309|gb|EFS54023.1| peptide chain release factor 1 [Propionibacterium acnes HL059PA1] gi|313818790|gb|EFS56504.1| peptide chain release factor 1 [Propionibacterium acnes HL046PA2] gi|313820562|gb|EFS58276.1| peptide chain release factor 1 [Propionibacterium acnes HL036PA1] gi|313822633|gb|EFS60347.1| peptide chain release factor 1 [Propionibacterium acnes HL036PA2] gi|313827397|gb|EFS65111.1| peptide chain release factor 1 [Propionibacterium acnes HL063PA2] gi|313830592|gb|EFS68306.1| peptide chain release factor 1 [Propionibacterium acnes HL007PA1] gi|313833628|gb|EFS71342.1| peptide chain release factor 1 [Propionibacterium acnes HL056PA1] gi|313838323|gb|EFS76037.1| peptide chain release factor 1 [Propionibacterium acnes HL086PA1] gi|314915694|gb|EFS79525.1| peptide chain release factor 1 [Propionibacterium acnes HL005PA4] gi|314917937|gb|EFS81768.1| peptide chain release factor 1 [Propionibacterium acnes HL050PA1] gi|314920320|gb|EFS84151.1| peptide chain release factor 1 [Propionibacterium acnes HL050PA3] gi|314924927|gb|EFS88758.1| peptide chain release factor 1 [Propionibacterium acnes HL036PA3] gi|314931540|gb|EFS95371.1| peptide chain release factor 1 [Propionibacterium acnes HL067PA1] gi|314957925|gb|EFT02028.1| peptide chain release factor 1 [Propionibacterium acnes HL002PA1] gi|314960548|gb|EFT04650.1| peptide chain release factor 1 [Propionibacterium acnes HL002PA2] gi|314962564|gb|EFT06664.1| peptide chain release factor 1 [Propionibacterium acnes HL082PA1] gi|314967573|gb|EFT11672.1| peptide chain release factor 1 [Propionibacterium acnes HL037PA1] gi|314973593|gb|EFT17689.1| peptide chain release factor 1 [Propionibacterium acnes HL053PA1] gi|314975815|gb|EFT19910.1| peptide chain release factor 1 [Propionibacterium acnes HL045PA1] gi|314983706|gb|EFT27798.1| peptide chain release factor 1 [Propionibacterium acnes HL005PA1] gi|314987887|gb|EFT31978.1| peptide chain release factor 1 [Propionibacterium acnes HL005PA2] gi|314989698|gb|EFT33789.1| peptide chain release factor 1 [Propionibacterium acnes HL005PA3] gi|315084734|gb|EFT56710.1| peptide chain release factor 1 [Propionibacterium acnes HL027PA2] gi|315085418|gb|EFT57394.1| peptide chain release factor 1 [Propionibacterium acnes HL002PA3] gi|315095866|gb|EFT67842.1| peptide chain release factor 1 [Propionibacterium acnes HL038PA1] gi|315098771|gb|EFT70747.1| peptide chain release factor 1 [Propionibacterium acnes HL059PA2] gi|315101459|gb|EFT73435.1| peptide chain release factor 1 [Propionibacterium acnes HL046PA1] gi|315105832|gb|EFT77808.1| peptide chain release factor 1 [Propionibacterium acnes HL030PA1] gi|315108751|gb|EFT80727.1| peptide chain release factor 1 [Propionibacterium acnes HL030PA2] gi|327326418|gb|EGE68208.1| peptide chain release factor 1 [Propionibacterium acnes HL096PA2] gi|327329874|gb|EGE71628.1| peptide chain release factor 1 [Propionibacterium acnes HL097PA1] gi|327445686|gb|EGE92340.1| peptide chain release factor 1 [Propionibacterium acnes HL043PA2] gi|327448330|gb|EGE94984.1| peptide chain release factor 1 [Propionibacterium acnes HL043PA1] gi|327450545|gb|EGE97199.1| peptide chain release factor 1 [Propionibacterium acnes HL087PA3] gi|327453373|gb|EGF00028.1| peptide chain release factor 1 [Propionibacterium acnes HL092PA1] gi|328753199|gb|EGF66815.1| peptide chain release factor 1 [Propionibacterium acnes HL025PA2] gi|328753962|gb|EGF67578.1| peptide chain release factor 1 [Propionibacterium acnes HL087PA1] gi|328754695|gb|EGF68311.1| peptide chain release factor 1 [Propionibacterium acnes HL020PA1] gi|328760891|gb|EGF74456.1| peptide chain release factor 1 [Propionibacterium acnes HL099PA1] Length = 361 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|138896684|ref|YP_001127137.1| peptide chain release factor 2, RF-2 [Geobacillus thermodenitrificans NG80-2] gi|134268197|gb|ABO68392.1| Bacterial peptide chain release factor 2, RF-2 [Geobacillus thermodenitrificans NG80-2] Length = 327 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 172/332 (51%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ D + + ++ + ++ + + ++ + D +L Sbjct: 1 MAAPGFWDDQKAAQAIISEANALKELVGEFESLAERFDNLEVTYELLKEEPDDELQAELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EEAKKLTKDFSQ-----FELQLLLNEPYDQNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L ++ G K + I G + +K E GVHR+ R+ +ASGR HT Sbjct: 116 AEKKGFKVETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I E+++IDT R+SG+GGQHVNTTDSAVRITH+PTGI+V Sbjct: 176 SFVSCEVVPEMDDNIEIEIRPEELKIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AM +L+A+LY + + E + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREKAMNMLKAKLYQKKMEEQQAELAELRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N+ + ++ V+ G ID I+ L A Sbjct: 293 LVKDHRTNVEVGNVQAVMDGEIDVFIDAYLRA 324 >gi|295707157|ref|YP_003600232.1| peptide chain release factor 2 [Bacillus megaterium DSM 319] gi|294804816|gb|ADF41882.1| peptide chain release factor 2 [Bacillus megaterium DSM 319] Length = 326 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ + + +++ + D+ + Q + ++ + + +L Sbjct: 1 MSDPNFWNDQQAAQTVINEANGLKDAVNQFNHLDETYENLQVSYELVKEEYDEDLAEELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SELKELISGMND-----FELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKKGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + ++PE + +DI ED+++DT RASG+GGQH+NTTDSAVRITH+PT ++V Sbjct: 176 SFVSCDIMPEFNDEISIDIRTEDLKVDTYRASGAGGQHINTTDSAVRITHLPTNVVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR +AMK+L+++LY +E ++ + + R Q IG G +IR+Y F Sbjct: 236 TERSQIKNREQAMKMLKSKLYQLEIEKQQEQLAEIRGEQKDIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + + V+ G +D I+ L +H Sbjct: 293 LVKDHRTNTEVGNTQSVMDGDLDPFIDAYLRSH 325 >gi|255320321|ref|ZP_05361506.1| peptide chain release factor 2 [Acinetobacter radioresistens SK82] gi|255302760|gb|EET81992.1| peptide chain release factor 2 [Acinetobacter radioresistens SK82] Length = 351 Score = 229 bits (584), Expect = 5e-58, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 169/342 (49%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + + + +E + +I+ + + ++ Q + + + Sbjct: 16 KKERLEEVLRELEDPSIWNDQSRAQAMAKEKGELENVINVLEGLSTQLEDAQAMLDLAVE 75 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +S + D+ A E ++ + + + D C +EI+AG+GG+EA + Sbjct: 76 ADDESLLADVQ-----AELSSAEEALAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDW 130 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +K E++ SD D G K + G + ++ ESGVHR+ R Sbjct: 131 ASMLLRMYMRWIERHGFKAELMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRK 190 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS + V V PE I++DI D+R DT RASG+GGQH+N TDSAVR+T Sbjct: 191 SPFDSGNRRHTSFSAVFVSPEVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLT 250 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSE 304 H+PTGI+V +++SQH NR A K LRA+LY++E + + K IG G Sbjct: 251 HMPTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMSKRNEAAQALEDSKSDIGWG---S 307 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L Sbjct: 308 QIRSYVLDDSRIKDLRTGVENSNTGAVLDGDLDKFIEASLKQ 349 >gi|307723715|ref|YP_003903466.1| hypothetical protein Thet_0528 [Thermoanaerobacter sp. X513] gi|307580776|gb|ADN54175.1| hypothetical protein Thet_0528 [Thermoanaerobacter sp. X513] Length = 368 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 180/350 (51%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEE 59 I +K EI+ +MS+ K L ++ A+ ++ + + K ++ Sbjct: 19 MGVSLDIESVKREIEEIDKKMSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDL 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + + +S ++ + +K + L D + IL I AG Sbjct: 79 STLIELGLEEGDESITDEVDKEYKELKKKLED-----LKIKTLLNGLYDKNNAILSIHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 +GG+EA + L RMY R+A + ++VE L ++ G K + I G + +K E Sbjct: 134 SGGTEAQDWAEMLLRMYTRWANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ +A+GR HTS A V VLPE +I+V+I ED++IDT RASG+GGQ+VN Sbjct: 194 AGVHRLVRISPFDAAGRRHTSFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVRITH+PTGI+V SE+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 254 KTESAVRITHLPTGIVVSCQSERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEH 312 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N + ++ V+ G ID IN L Sbjct: 313 REAAWGNQIRSYVFQPYTLVKDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 362 >gi|303257507|ref|ZP_07343519.1| peptide chain release factor 2 [Burkholderiales bacterium 1_1_47] gi|302859477|gb|EFL82556.1| peptide chain release factor 2 [Burkholderiales bacterium 1_1_47] Length = 348 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + +L++E + ++ I + +L + Sbjct: 11 DQKERRLEEVNQALEDPSIWSDQERAQQLSKEKKRLEDVVLTIKHLTTGLSDALELFEMA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D+ + + ++ + + + D+ +C LEI+AG GG+EA Sbjct: 71 KEEDDDASLEAVEADINNLKKEV-----EHLEFQRMFNQEHDEANCFLEIQAGAGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY ++A + +K E++ ++ D G K I+G + ++ E+G+HR+ Sbjct: 126 DWASMLERMYIKFAERQSFKPEIVEETEGDVAGIKGCTIKITGDYAYGWLRTETGIHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS A+V V+PE ++++ D+RIDT RASG+GGQH+ TDSAVR Sbjct: 186 RKSPFDSNARRHTSFASVFVVPEVDDSFEIEVNPADLRIDTFRASGAGGQHIQKTDSAVR 245 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPTGI+ V+ + +SQHQN+ AM +L++RLY+ E ++ + + K I G Sbjct: 246 ITHIPTGIVAVSQTSRSQHQNKEEAMTILKSRLYEAELRKRQATQQALEDNKSDISWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ VL G ++ I L Sbjct: 304 -HQIRSYVLDQSRVKDLRTNVETGNTTAVLDGALESFIEASLKQ 346 >gi|332978282|gb|EGK15010.1| peptide chain release factor RF2 [Psychrobacter sp. 1501(2011)] Length = 325 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 170/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + K+++E + + II+ I+ + ++ + + + D + Sbjct: 1 MESPELWNDPERATKISKEKSQLDAIINTITGLETTLEDAAAMLELAVEA-DDEGLLSDV 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q E+ A + ++ +LE + + D +C ++I++G+GG+EA + L RMY R+ Sbjct: 60 QQELNAAQAQVEDLE----FKRMFNGEMDPNNCFVDIQSGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KV+V S G K ++G F ++ E+GVHR+ R +++ HT Sbjct: 116 CESHGFKVDVTEVSAGSVAGVKSASFKVTGDYAFGWLRTETGVHRLVRKSPFDSNNGRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V V PE + D+RIDT R+SG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFAAVFVSPEIDDDIDIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHEPTNTVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQH N+ AMK+LRA+LY++E ++ ++ + K +G G +IR+Y R Sbjct: 236 NERSQHGNKATAMKMLRAKLYELEMQKRMEKQQAVEDNKSDVGWG---SQIRSYVLDDSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R + + VL G +D I L A Sbjct: 293 IKDLRTGVETFNTGAVLDGDLDQFIEASLKA 323 >gi|255020528|ref|ZP_05292592.1| peptide chain release factor 2 [Acidithiobacillus caldus ATCC 51756] gi|254970048|gb|EET27546.1| peptide chain release factor 2 [Acidithiobacillus caldus ATCC 51756] Length = 349 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 175/346 (50%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + R E++L + + L E + ++ + DQK ++ ++ Sbjct: 10 DLPGKAARLEEVQLESEDPKLWEDPERAQALERERTQLEAVVRPLQELDQKLRDSAEMVE 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + + ++ A + +LE + D ++I+AG GG+E Sbjct: 70 LAV-AEQDEALLEAVAGDLEAARATVEKLEFQRM----FSGPQDGADAFVDIQAGAGGTE 124 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY + R + E++ S+ + G K + G F ++ E+GVHR Sbjct: 125 AQDWANMLLRMYLHWCEARGFSTELVEVSEGEVAGIKSASLHVRGDHAFGWLRTETGVHR 184 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R ++ R HTS A+V V PE +++I D+++DT RASG+GGQHVN TDSA Sbjct: 185 LVRKSPFDSGNRRHTSFASVFVYPEIDDSFEIEINPADLKVDTYRASGAGGQHVNKTDSA 244 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 VR+THIPTGI+V +++SQH+NR AM++LR++LY++E ++ E+ + K IG G Sbjct: 245 VRLTHIPTGIVVACQTDRSQHKNRAEAMRMLRSKLYELEMQKRNAEKQALEDTKSDIGWG 304 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + + VL G +D + L A Sbjct: 305 ---HQIRSYVLDQSRIKDLRTGVEVGDTQRVLDGDLDGFVEAALKA 347 >gi|89094633|ref|ZP_01167570.1| peptide chain release factor 2, programmed frameshift [Oceanospirillum sp. MED92] gi|89081103|gb|EAR60338.1| peptide chain release factor 2, programmed frameshift [Oceanospirillum sp. MED92] Length = 364 Score = 229 bits (583), Expect = 5e-58, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + + D KL +E + + ++ I + +DL + Sbjct: 27 ETKQERLEEVSRELEDPAVWDDPENAQKLGKERSTLEAVVGTIDDLTAGVADTRDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D + + +V A+ +++LE + + D + L+I+AG+GG+EA Sbjct: 87 VEE-DDEDTVAEVESDVTAMLDRLQQLE----FRRMFAGEADPNNAFLDIQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + +K E+L S D G K + G F ++ E+GVHR+ Sbjct: 142 DWAEMMLRMYLRWGEDKGFKTELLECSAGDVAGIKSATISFQGEYAFGWLRTETGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++V V PE + D++I D+R+D RASG+GGQHVN T+SAVR Sbjct: 202 RKSPFDSGGRRHTSFSSVFVSPEIDDNIDIEINPADLRVDVYRASGAGGQHVNRTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH P+GI+V + +++SQHQN+ MK LRA+LY+VE + A + + K IG G Sbjct: 262 ITHEPSGIVVQSQAQRSQHQNKDTCMKQLRAKLYEVEMLKRTEAAQEQEDNKADIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 320 -SQIRSYVLDDQRIKDLRTGVQSSNCDKVLDGDLDMFIEASLKA 362 >gi|319441088|ref|ZP_07990244.1| peptide chain release factor 1 [Corynebacterium variabile DSM 44702] Length = 361 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 135/357 (37%), Positives = 207/357 (57%), Gaps = 17/357 (4%) Query: 8 QICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ D+ + + +E+++S+ A ++ + ++ + P+I + Q +++ + Sbjct: 10 KVDDILSEYQGLEMQLSDPVLHNDAAAARRVAKRFSELQPVIQTYNRLTQAREDHEAAAE 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + D + EI LE ++ LL P+D D ++E+++G GG E Sbjct: 70 MASEDAEFAAEAD-------RLAAEIPALEEKLTDLLAPRDPHDSDDVVMEVKSGAGGEE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFE 179 AALF G+L RMY+RYA + EVL +++ D GG K++ +I + +S KFE Sbjct: 123 AALFAGELVRMYQRYAEKHGFTCEVLDTNETDLGGVKDLTMSIRSKQPTRDGAWSVFKFE 182 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVN 238 GVHRVQR+P TE+ GR+ TSAA V V PE E DV I +D+R+D R+SG GGQ VN Sbjct: 183 GGVHRVQRIPVTESQGRIQTSAAGVLVYPEPDEVEDVQIDDKDLRVDVYRSSGKGGQGVN 242 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTGI+V E+SQ QN+ RAM+VL ARL ++ + + R QI Sbjct: 243 TTDSAVRITHLPTGIVVTCQKERSQIQNKARAMQVLAARLQQMKEEEADAAAAEGRHAQI 302 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + R++DHRI L+ VL G ++ + L A +A + + Sbjct: 303 RTMDRSERIRTYNFPESRVSDHRIGYKANNLDAVLDGDLEALFGALHDADRAARLEA 359 >gi|300781422|ref|ZP_07091276.1| peptide chain release factor RF1 [Corynebacterium genitalium ATCC 33030] gi|300533129|gb|EFK54190.1| peptide chain release factor RF1 [Corynebacterium genitalium ATCC 33030] Length = 360 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 150/356 (42%), Positives = 214/356 (60%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D + + I+ +M + V + KL++ YA + PII+ + Q +++ + + Sbjct: 10 VDDYVSEYQGIQAQMGDPDVVGDQDLFRKLSKRYAQLQPIINVNNELTQAREDLEAAQEM 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E +E EI LE E+ LL P+D D I+EI+AG GG EA Sbjct: 70 AAEDKEFAEEA-------TRLEGEIVRLEEELADLLAPRDEHDADDVIMEIKAGAGGEEA 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY++YA +VL S++D GG K++ + + +S +KFE Sbjct: 123 ALFAGDLARMYQKYAEKAGLSWDVLDLSESDLGGVKDMTVAVKAKNPSRDGAWSMLKFEG 182 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQR+P TE+ GR+ TSAA V V PE E++ DI +D+R+D R+SG GGQ VNT Sbjct: 183 GVHRVQRIPVTESQGRIQTSAAGVLVYPEPEEVEAVDIDEKDLRVDVYRSSGKGGQGVNT 242 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V E+SQ QNR RAM+VL+ARL +ER++ E + R Q+ Sbjct: 243 TDSAVRITHLPTGIVVTCQKERSQIQNRARAMQVLQARLDQLEREKAEAEAAEGRASQVR 302 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYN+ + RI+DHRIN L+ VL G +DDII L T + + + + Sbjct: 303 TMDRSERIRTYNWPENRISDHRINYKSNNLDAVLDGNMDDIITALQTHERQERLEA 358 >gi|326382082|ref|ZP_08203775.1| peptide chain release factor 1 [Gordonia neofelifaecis NRRL B-59395] gi|326199508|gb|EGD56689.1| peptide chain release factor 1 [Gordonia neofelifaecis NRRL B-59395] Length = 364 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 143/356 (40%), Positives = 207/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A ++ ++S+ ++ + +A ++P+++ + + + + Sbjct: 16 IDDILAEHAGLQAQLSDPALHDDPANARRVGKRFAELAPVMTTYTKLTAARDDLEAAR-- 73 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +E E+ A+E + EL+ + LL P+D D +LE+++G GG E+ Sbjct: 74 -----ELAEADAAFAEEIPALEATVTELDATLTDLLAPRDPHDSDDVVLEVKSGAGGEES 128 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMY +Y WK VL ++++D GGYKE +I R V+SR+KFE Sbjct: 129 ALFASDLVRMYLKYCERHGWKATVLGATESDLGGYKEATLSIKARETVRDGVWSRLKFEG 188 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V + PE E ++ I D+RID R+SG GGQ VNT Sbjct: 189 GVHRVQRVPVTESQGRIHTSAAGVLIYPEPDEVEEIQIDESDLRIDVYRSSGKGGQGVNT 248 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PT I+V +E+SQ QN+ RAM+VL ARL + E SA R+ QI Sbjct: 249 TDSAVRITHLPTNIVVTCQNERSQLQNKARAMQVLAARLKAAAEEEAEAEASAGRQAQIR 308 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + RITDHRI L+ VL G +D +++ L+ A + + Sbjct: 309 TVDRSERIRTYNFPENRITDHRIGYKANNLDSVLGGEMDALLDALVEADKQARLQQ 364 >gi|257092654|ref|YP_003166295.1| peptide chain release factor 2 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045178|gb|ACV34366.1| peptide chain release factor 2 [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 347 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ + + + D +L E ++ ++ ++ ++ +L + Sbjct: 10 DQKADQLKTVARELEDPAVWDNAERAQELGRERRSLENVVLTLNRVADSLRDTGELFAMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D V A I + + + + + + D +C ++I+AG GG+EA Sbjct: 70 REEDDDE-----TLNAVAADIDGIEKEVSGLEFRRMFNNPADPLNCFVDIQAGAGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RYA + + VEVL S+ + G K ISG + ++ E+G+HR+ Sbjct: 125 DWAAMLLRMYLRYAERKGYAVEVLEESEGEVAGIKTASIKISGEYAYGMLRSETGIHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ R HTS +V+ PE +V+I ++RIDT RASG+GGQH+N TDSAVR Sbjct: 185 RKSPFDSNARRHTSFCSVSAYPEIDDSFEVEINPAELRIDTYRASGAGGQHINKTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+V +++SQH+NR AM +L++R+Y+ E ++ E+ + K IG G Sbjct: 245 ITHLPTNIVVQCQNDRSQHRNRAEAMAMLKSRIYEAEMRKRQTEQQKLEDAKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 303 -HQIRSYVLDQSRIKDLRTNVEVGNTQGVLDGDLDQFIEASLKQ 345 >gi|257082363|ref|ZP_05576724.1| peptide chain release factor 2 [Enterococcus faecalis E1Sol] gi|256990393|gb|EEU77695.1| peptide chain release factor 2 [Enterococcus faecalis E1Sol] Length = 327 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNIETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|30249212|ref|NP_841282.1| peptide chain release factor 2 [Nitrosomonas europaea ATCC 19718] gi|30180531|emb|CAD85140.1| Peptide chain release factor 2 [Nitrosomonas europaea ATCC 19718] Length = 347 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 177/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+E + + + ++ E ++ I+ + D++ ++ +L + Sbjct: 10 DAKQIRLTELERQSEDPAIWNDPDRAQEMGREKKSLENIVHTLQSVDRQLRDTHELLQIA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ +A + + + + D D +C ++I++G+GG+EA Sbjct: 70 QEENDKETLQSIADDVTELDQTL-----AGMEFRRMFSDPMDPNNCFVDIQSGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY R VE+L S D G K ISG + ++ E+GVHR+ Sbjct: 125 DWASMLERMYLRYCERRGLGVELLEESPGDVAGIKSATLKISGEYAYGYLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + ++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 185 RKSPFDSGNRRHTSFASVFVYPEVDDSIEIDINPADLRVDTFRASGAGGQHINKTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITHIPTGI+V S +SQH+NR AM VL++RLY+ E ++ + + K I G Sbjct: 245 ITHIPTGIVVQCQSGRSQHRNRADAMTVLKSRLYEAELRKRNETKQAIEDSKTDIAWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 303 -HQIRSYVLDQSRIKDLRTNIEIGNTQAVLDGDLDTFIEASLKQ 345 >gi|222056175|ref|YP_002538537.1| hypothetical protein Geob_3093 [Geobacter sp. FRC-32] gi|221565464|gb|ACM21436.1| hypothetical protein Geob_3093 [Geobacter sp. FRC-32] Length = 370 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 178/343 (51%), Gaps = 10/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I L+ E+E R++ D + + + ++ +D+ ++ +D+ +I Sbjct: 24 DIDSLREDIQELESRIAAPGFWDDNEAAQKVLKERTVMEKTLASWDRLNRQVEDIRVLIE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + EV + ++ + + + + D SC I +G GG+E+ Sbjct: 84 LGSEAED--EATLAEVHDLNDQLEKGLVDAEFQKMLSGPHDASSCFFSINSGAGGTESQD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RY + WK E+ D+ G K + ++SG + +K E G+HR+ R Sbjct: 142 WAEMLLRMYLRYCERKGWKTEITDYQSGDEAGVKGVTFSVSGEYAYGYLKAEVGIHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V PE +IDV I D+R+DT R+SG+GGQHVNTTDSA+RI Sbjct: 202 ISPFDSNARRHTSFASVFVFPEIEDDIDVKIVETDLRVDTFRSSGAGGQHVNTTDSAIRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 THIPTGI+V +E+SQH NR AM+VLRA+LY+ E + ++ + K +IG G Sbjct: 262 THIPTGIVVACQTERSQHMNRATAMRVLRAKLYERELQERESQAAEIAGEKKEIGWG--- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G ++ I L Sbjct: 319 SQIRSYVLHPYKMVKDLRTGVESGNPDAVLDGELEQFIIAFLM 361 >gi|71908457|ref|YP_286044.1| peptide chain release factor 2 [Dechloromonas aromatica RCB] gi|71848078|gb|AAZ47574.1| bacterial peptide chain release factor 2 (bRF-2) [Dechloromonas aromatica RCB] Length = 325 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 104/331 (31%), Positives = 169/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D +L E ++ I+ + + ++L + + + + + Sbjct: 1 MEDPKIWDDAKRAQELGREKKSLENIVLVLEEVQSGLNDGRELFDMGKEDGDEDTLLSVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 A E+ + + + + + D C LEI+AG GG+EA + L RMY +Y Sbjct: 61 -----ADNAELEKKVAALEFRRMFNNPSDPMPCFLEIQAGAGGTEAQDWASMLLRMYLKY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + VEV+ S+ D G K +G + ++ E+G+HR+ R +++ R HT Sbjct: 116 GEKKGFTVEVMEESEGDVAGLKSATVKFTGDYAYGTLRTETGIHRLVRKSPFDSNARRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V PE + +++I D+R DT RASG+GGQH+N TDSAVR+TH+PTGI+V Sbjct: 176 SFTSVFVFPEVDDSIEININPADVRTDTYRASGAGGQHINKTDSAVRLTHVPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+NR A ++LRAR+Y+ E ++ E+ + K IG G +IR+Y Q R Sbjct: 236 NDRSQHRNRDEAWQMLRARIYEFELRKQQAEQQKLEDAKSDIGWG---HQIRSYVLDQSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R N + VL G +D I L Sbjct: 293 IKDLRTNHETGNTQAVLDGDLDPFIEASLKQ 323 >gi|19552424|ref|NP_600426.1| peptide chain release factor 1 [Corynebacterium glutamicum ATCC 13032] gi|62390088|ref|YP_225490.1| peptide chain release factor 1 [Corynebacterium glutamicum ATCC 13032] gi|145295339|ref|YP_001138160.1| peptide chain release factor 1 [Corynebacterium glutamicum R] gi|24418635|sp|Q8NR57|RF1_CORGL RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|166223553|sp|A4QDG1|RF1_CORGB RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|21323967|dbj|BAB98593.1| Protein chain release factor A [Corynebacterium glutamicum ATCC 13032] gi|41325424|emb|CAF19904.1| PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) [Corynebacterium glutamicum ATCC 13032] gi|140845259|dbj|BAF54258.1| hypothetical protein [Corynebacterium glutamicum R] Length = 358 Score = 229 bits (583), Expect = 6e-58, Method: Composition-based stats. Identities = 143/358 (39%), Positives = 217/358 (60%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + +E +M++ + ++ + Y+ + PII+ +++ + + Sbjct: 8 VDDILSEYHGLEQQMADPELHNDAAAARRVGKRYSELQPIINVHRDLVSAQEDLEAAREM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + ++EV+ +E+++ +L L P+D D + ++EI+AG GG EA Sbjct: 68 AHEDHEFQAEAERLEVEVVELEEKLADL-------LAPRDPHDGEDIVMEIKAGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF GDL RMY+++A + VEVL S+++D GG K+I +I R +S+ KFE Sbjct: 121 ALFAGDLLRMYQKFADKHGFVVEVLDSAESDLGGVKDITLSIRSRQPSRDGAWSQFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E +V+I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVENVEIDEKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QNR RAM+VL ARL ++ + A E + R QI Sbjct: 241 TDSAVRITHLPTGLVVTCQKERSQIQNRARAMQVLAARLQAMKEEEAAAEAATGRAAQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYN+ + RI+DHRI L+ VL G +DD+ L A +A+ + + Sbjct: 301 TMDRSERIRTYNWPENRISDHRIGFKANNLDSVLDGELDDLFTALQAAERAERLEAEG 358 >gi|15644115|ref|NP_229164.1| peptide chain release factor 1 [Thermotoga maritima MSB8] gi|7388056|sp|Q9X183|RF1_THEMA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|52695394|pdb|1RQ0|A Chain A, Crystal Structure Of Peptide Releasing Factor 1 gi|52695395|pdb|1RQ0|B Chain B, Crystal Structure Of Peptide Releasing Factor 1 gi|52695396|pdb|1RQ0|C Chain C, Crystal Structure Of Peptide Releasing Factor 1 gi|4981923|gb|AAD36433.1|AE001790_5 peptide chain release factor RF-1 [Thermotoga maritima MSB8] Length = 342 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 147/335 (43%), Positives = 205/335 (61%), Gaps = 16/335 (4%) Query: 22 RMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + EYA I I + + + ++ + L Sbjct: 11 LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLR--------------EEG 56 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 L IEK +EL+ LL + I+EIR GTGG EAALF DLFRMY RYA Sbjct: 57 ENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + W +EV + D GG +E+V + G+ + +K+ESGVHRVQRVP TE+ GR+HTS Sbjct: 117 ERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTS 176 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLPE E D++I ED++I+T RASG GGQ+VN T+SAVRITH+PTGI+V +E Sbjct: 177 TATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ+QN+ A+++LRARLY +++++ E S RK QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 237 RSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RIN T Y+L+ +L G +D+II+ L+ + Sbjct: 297 RINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331 >gi|294501808|ref|YP_003565508.1| peptide chain release factor 2 [Bacillus megaterium QM B1551] gi|294351745|gb|ADE72074.1| peptide chain release factor 2 [Bacillus megaterium QM B1551] Length = 326 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + + +++ + D+ + Q + ++ + + +L Sbjct: 1 MADPNFWNDQQAAQTVINEANGLKDAVNQFNHLDETYENLQVSYELVKEEYDEDLAEELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SELKELISGMND-----FELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKKGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + ++PE + +DI ED+++DT RASG+GGQH+NTTDSAVRITH+PT ++V Sbjct: 176 SFVSCDIMPEFNDEISIDIRTEDLKVDTYRASGAGGQHINTTDSAVRITHLPTNVVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR +AMK+L+++LY +E ++ + + R Q IG G +IR+Y F Sbjct: 236 TERSQIKNREQAMKMLKSKLYQLEIEKQQEQLAEIRGEQKDIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + + V+ G +D I+ L +H Sbjct: 293 LVKDHRTNTEVGNTQSVMDGDLDPFIDAYLRSH 325 >gi|146308390|ref|YP_001188855.1| peptide chain release factor 2 [Pseudomonas mendocina ymp] gi|145576591|gb|ABP86123.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudomonas mendocina ymp] Length = 378 Score = 228 bits (582), Expect = 7e-58, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + ++ + L E A ++ I+ I + +DL + Sbjct: 41 DHKHDRLVEVNRELEDASVWNKPEYAQALGRERAMLAQIVETIDDLTGSLADSRDLLEMA 100 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + D+ E+ LE + + + D +C L+I+AG+GG+EA Sbjct: 101 AEENDEGAVNDIVAEV----ERLREILEK-LEFRRMFSGEMDPNNCYLDIQAGSGGTEAQ 155 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + ++ S+ + G K I G F ++ E GVHR+ Sbjct: 156 DWANILLRMYLRWADKRGFDATIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 215 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 216 RKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 275 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY++E ++ + + K IG G Sbjct: 276 ITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELEMQKRNAASQALEDSKSDIGWG-- 333 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D + L Sbjct: 334 -HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLDGYLEASLKQ 376 >gi|218666919|ref|YP_002424975.1| peptide chain release factor 2, programmed frameshift [Acidithiobacillus ferrooxidans ATCC 23270] gi|226739123|sp|B7J4M2|RF2_ACIF2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|218519132|gb|ACK79718.1| peptide chain release factor 2, programmed frameshift [Acidithiobacillus ferrooxidans ATCC 23270] Length = 365 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 180/346 (52%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + + R E++ + + + K L E +A+ +I+ + + ++ Sbjct: 26 DLEEKRGRLEEVQRELEDPTIWNNAEKAQELGRERSALEAVITPMDKLTASLADGGEMLE 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D+E+ ++ + +LE + D +C ++I+AG GG+E Sbjct: 86 LA-LSEQDAELLAAVDADLDTALSLVEKLEFQRM----FSGAQDAANCFVDIQAGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + + RMY +A + E++ S+ + G K + G F ++ E+GVHR Sbjct: 141 AQDWAEMILRMYLHWAESHGFAAELVEVSEGEVAGIKSASIHVRGDHAFGWLRTETGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R ++ R HTS A+V V PE +VDI D+++DT RASG+GGQHVN TDSA Sbjct: 201 LVRKSPFDSGNRRHTSFASVFVYPEIDDSFEVDINPADLKVDTYRASGAGGQHVNKTDSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 +RITH+P+GI+V +++SQH+NR AM++LR++LY++E ++ A E+ + K IG G Sbjct: 261 IRITHVPSGIVVACQTDRSQHKNRAEAMRMLRSKLYEMEMQKRAVEKQALEDSKSDIGWG 320 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + + VL G +D I L A Sbjct: 321 ---HQIRSYVLDQSRIKDLRTGVEVGDTQKVLDGALDMFIEAALKA 363 >gi|311693658|gb|ADP96531.1| peptide chain release factor 2 [marine bacterium HP15] Length = 351 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 170/340 (50%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+E + + D L +E A + I+ I ++ + L + + Sbjct: 18 ERLIEVERELEQPSVWDDPERAQALGKERADLELIVKTIDNLTSGLEDAEGLLDIAAEEE 77 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + ++ ++ + + + + D + L+I+AG+GG+EA + Sbjct: 78 DEGTVAEIESDLEGLDKELEK-----LEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWAN 132 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +K E++ + + G K I G + ++ E+GVHR+ R Sbjct: 133 MLLRMYLRWAERRGFKAEIVELMEGEVAGIKSATIHIQGDYAYGWLRTETGVHRLVRKSP 192 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS ++V V PE +++I D+R+D RASG+GGQHVN T+SAVR+TH Sbjct: 193 FDSGNRRHTSFSSVFVSPEVDDSFEIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHN 252 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERI 306 PTGI+V + +SQHQN+ +AMK L+A+L++ E + E+ + + K IG G +I Sbjct: 253 PTGIVVACQAGRSQHQNKDQAMKQLKAKLFEREMQERNAEKQKAEDAKADIGWG---SQI 309 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G ID I L Sbjct: 310 RSYVLDDSRIKDLRTKVETSNTQSVLDGDIDKFIEASLKM 349 >gi|68536431|ref|YP_251136.1| peptide chain release factor 1 [Corynebacterium jeikeium K411] gi|119361528|sp|Q4JUI9|RF1_CORJK RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|68264030|emb|CAI37518.1| peptide chain release factor RF-1 [Corynebacterium jeikeium K411] Length = 358 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 137/356 (38%), Positives = 209/356 (58%), Gaps = 17/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ + +E+++S+ + K+ + ++ + PII +Q +++++ + Sbjct: 8 IDDILAEYQGLEMQLSDPELHNDPAAARKVGKRFSELQPIIQTHQKLEQAREDQEAASEM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E + E+ +E+++ +L L P+D D ++EI++G GG EA Sbjct: 68 ASEDKEFAEEAKRLEEEISELEEQLTDL-------LAPRDPHDGDDIVMEIKSGAGGEEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + E+L ++ D GG K++ +I + +S KFE Sbjct: 121 ALFAGELARMYQRYAERHGFSTEILGLNETDLGGVKDMTLSIRSKQPSRDGAWSEFKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQR+P TE+ GR+ TSAA V V PE E DV I +DIR+D R+SG GGQ VNT Sbjct: 181 GVHRVQRIPVTESQGRIQTSAAGVLVYPEPDEVEDVHIDDKDIRVDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PT I+V E+SQ QNR RAM+VL ARL ++ + E + R QI Sbjct: 241 TDSAVRITHLPTNIVVTCQKERSQIQNRARAMQVLAARLQQLKEEEAEAEAAEGRAAQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + DRSERIRTYNF + R++DHRI L+ VL G ++ ++ L A +A+ + + Sbjct: 301 TMDRSERIRTYNFPESRVSDHRIGYKANNLDSVLDGDLEALLAALKEADRARRLEA 356 >gi|302785656|ref|XP_002974599.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii] gi|300157494|gb|EFJ24119.1| hypothetical protein SELMODRAFT_101651 [Selaginella moellendorffii] Length = 386 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 162/359 (45%), Positives = 233/359 (64%), Gaps = 11/359 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + K++ +++R A + + E D IK+ +E + + I K++E Sbjct: 16 ILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAKEKEV 75 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA- 118 L ++ + D E+R LA E+ +E+R+ ++++ L+PKD D + CILE Sbjct: 76 IGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLKLIPKDEADSRGCILEASCL 135 Query: 119 -------GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 G GG EA++F DLF+MYE+YAA W+ EVLS + D GYKE A ISG Sbjct: 136 ICFIYLLGAGGDEASIFASDLFKMYEKYAANNSWRFEVLSITTTDTRGYKEASAVISGDD 195 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 V+ +KFESGVHRVQRVP TE +GR+HTS A+VA+LPEA E+DV+I ++I+IDT RA G Sbjct: 196 VYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGG 255 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVNTT SAVR+TH PTGI+V E+SQH+N+ +A+ +L ARLY++ER R A RS Sbjct: 256 AGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAAASRS 315 Query: 291 ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQ 348 R+ QIGS DRSERIRTYNF QGR+TDHR+ +T + +E +++G ++ +N L H+ Sbjct: 316 ELRQDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHSIEQIMEGIGLEIFVNALKMQHE 374 >gi|261409628|ref|YP_003245869.1| peptide chain release factor 2 [Paenibacillus sp. Y412MC10] gi|261286091|gb|ACX68062.1| peptide chain release factor 2 [Paenibacillus sp. Y412MC10] Length = 331 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 113/328 (34%), Positives = 171/328 (52%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D K A ++ + S + Y + + + D +I D E D E Sbjct: 1 MAAPDFWDDNEKAQALIAEMNAVKSSVDQYQKLQADYDDAVVMIELA--DEEGDDSLAGE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + K++ E LL D + ILE+ G GG+E+ + L RMY R+A Sbjct: 59 IGETIKDLVGRVEEFELQLLLNQPYDKMNAILELHPGAGGTESQDWGQMLHRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGFNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PTG++V +E+ Sbjct: 179 SCDVVPEITDDVEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR RAM +LR++LY+ + + E + R Q +IR+Y F + DH Sbjct: 239 SQIKNRERAMTMLRSKLYERKIEEQQKELAEIRGEQ-SDIAWGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R + + V+ G +D I+ L + Sbjct: 298 RTQVETGNVGAVMDGDLDGFIDGYLRSQ 325 >gi|292492472|ref|YP_003527911.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4] gi|291581067|gb|ADE15524.1| hypothetical protein Nhal_2436 [Nitrosococcus halophilus Nc4] Length = 365 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 177/343 (51%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+E ++ + +L +E A + ++ ++ ++ + ++L + Sbjct: 28 AAKQERLVEVERELAIPSVWNEPERAQRLGQERAQLQAVVGPLAALGEEIGQIKELFELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + R+++ A + + + ++ + + D + L+I+AG+GG+EA Sbjct: 88 VEEGDEDTAREVS-----AELETMEQRLEKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ +K E+ S + G K G F ++ E+GVHR+ Sbjct: 143 DWANMLLRMYLRWGEKHGFKTELTEVSAGEVAGIKSATIRFEGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE E D++I D+RIDT RA+G+GGQHVN TDSAVR Sbjct: 203 RKSPFDSGNRRHTSFASVFVYPEVDERIDIEINPADLRIDTYRAAGAGGQHVNRTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+P+ I+V SE+SQHQN+ M LRA+LY++E ++ E+ + K IG G Sbjct: 263 ITHLPSNIVVQCQSERSQHQNKAHGMAQLRAKLYELEMRKRQAEKQAAEEAKADIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + + VL G +D I L Sbjct: 321 -SQIRSYVLDQSRIKDLRTGVEMGNTQAVLDGDLDLFIEASLK 362 >gi|85712973|ref|ZP_01044012.1| Protein chain release factor B [Idiomarina baltica OS145] gi|85693211|gb|EAQ31170.1| Protein chain release factor B [Idiomarina baltica OS145] Length = 348 Score = 228 bits (582), Expect = 8e-58, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 178/341 (52%), Gaps = 15/341 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + D L +E AA+ +I + +Q ++ + L + + Sbjct: 13 KKERLEEVTRELEQPEVWDDPPKAQSLGKERAALEQVIETLDNLEQGLEDIEGLVDLAVE 72 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++ + Q + + + + + +D C ++I++G+GG+EA + Sbjct: 73 AEDETTFDEAEQELKELLTQLEA-----LEFRRMFSRDNDSSDCYVDIQSGSGGTEAQDW 127 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A ++K E+ S+ + G K I+G + ++ E+GVHR+ R Sbjct: 128 ANMLLRMYLRWAEAHEFKTEITELSEGEVAGIKSATVRIAGEYAYGWLRTETGVHRLVRK 187 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS A+V + PE +I+++I D+RIDT RASG+GGQHVN TDSAVRIT Sbjct: 188 SPFDSGNRRHTSFASVFIYPEVDDDIEIEINPSDLRIDTYRASGAGGQHVNRTDSAVRIT 247 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSE 304 H PTGI+V S++SQH+N+ AMK L+A+LY++E ++ ++ + K IG G Sbjct: 248 HEPTGIVVQCQSDRSQHKNKDSAMKQLKAKLYELEIQKQNEDKQALEDSKADIGWG---S 304 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 305 QIRSYVLDDARIKDLRTGIENRNTQAVLDGALDPFIEASLK 345 >gi|313801610|gb|EFS42850.1| peptide chain release factor 1 [Propionibacterium acnes HL110PA2] Length = 361 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDPSAMGRLGRRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|294142345|ref|YP_003558323.1| peptide chain release factor 2 [Shewanella violacea DSS12] gi|293328814|dbj|BAJ03545.1| peptide chain release factor 2 [Shewanella violacea DSS12] Length = 352 Score = 228 bits (582), Expect = 9e-58, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 173/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + S + L +E AA+ I+ I D ++ + L + Sbjct: 15 DAKKERLEEVSRELENSDVWNDPDNAQALGKERAALELIVKTIDDMDTGLEDVEGLLDLA 74 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D + ++ + ++ + + D + L+I++G+GG+EA Sbjct: 75 IEEGDEDTFNDASAE-----LDDLEKRLEDLEFRRMFSGPHDIANSYLDIQSGSGGTEAQ 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ + D G K +G F ++ E+GVHR+ Sbjct: 130 DWANMVLRMYLRWGEAHDYKPELIEVTAGDVAGIKGATIKFNGEYAFGSLRTETGVHRLV 189 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG+ HTS +V V PE + ++DI D+RIDT RASG+GGQH+N T+SA+R Sbjct: 190 RKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASGAGGQHINKTESAIR 249 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDR 302 ITH+PT +V +++SQH+NR AMK L+A+L+++E + E+ + + K IG G Sbjct: 250 ITHVPTNTVVQCQNDRSQHKNRDAAMKQLKAKLFELEMLKQNQEKQAAEDAKSDIGWG-- 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 308 -SQIRSYVLDDARIKDLRTGVESRNTQTVLDGGLDMFIQASLK 349 >gi|285018127|ref|YP_003375838.1| peptide chain release factor 2 protein [Xanthomonas albilineans GPE PC73] gi|283473345|emb|CBA15850.1| probable peptide chain release factor 2 protein [Xanthomonas albilineans] Length = 373 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 170/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + L E A + + I+ + E +L + Sbjct: 27 DAKKERLEEVARELESPDVWNDPERAQGLGRERANLEKTVGGIASVLEGLNESLELLE-L 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + +D + +V + ++ +LE + D + ++I+AG GG+EA Sbjct: 86 AESENDEDTAQGVIADVDRFQTQVEKLEFQRM----FSGQMDSCNAFVDIQAGAGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R WK E++ S + G K + G + +K E+GVHR+ Sbjct: 142 DWAEILLRMYLRWCESRGWKTELMEVSGGEVAGIKSATLRVEGDFAYGWLKTETGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +V V PE + D+DI D++ D R+SG+GGQHVN T+SAVR Sbjct: 202 RKSPFDSDNRRHTSFTSVFVSPEVDDNIDIDINPADLKTDVYRSSGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PTGI+V + +SQHQNR AMK+L A+LY++E ++ ER A K IG G Sbjct: 262 ITHVPTGIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRNAERDAVEATKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR Y Q RI D R + + VL G +D+ + L Sbjct: 320 -SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASLK 361 >gi|126667155|ref|ZP_01738129.1| peptide chain release factor 2 [Marinobacter sp. ELB17] gi|126628311|gb|EAZ98934.1| peptide chain release factor 2 [Marinobacter sp. ELB17] Length = 351 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 102/340 (30%), Positives = 165/340 (48%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+E + + L +E + + I+S I + + L + + + Sbjct: 18 ERLTEVERELEMPSVWEDPERAQSLGKERSDLELIVSTIDRLTSGLTDAEGLLEMAVEED 77 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ + D+ + + + + D + L+I+AG+GG+EA + Sbjct: 78 DEATVADIGNDLAEMDANLEK-----LEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWGN 132 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +K E++ + + G K I G F ++ E+GVHR+ R Sbjct: 133 MLLRMYLRWAERRGFKAEIVELQEGEVAGIKSATLHIQGDYAFGWLRTETGVHRLVRKSP 192 Query: 191 TEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS ++V V ++I D+R+D RASG+GGQHVN T+SAVR+TH Sbjct: 193 FDSGNRRHTSFSSVFVAPEVDDSFVIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHN 252 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V + +SQHQN+ +AMK L+A+L++ E + E+ + K IG G +I Sbjct: 253 PTGIVVACQAGRSQHQNKDQAMKQLKAKLFEHEMQARNAEKQKLEDSKSDIGWG---SQI 309 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G ID I L Sbjct: 310 RSYVLDDSRIKDLRTKVETSNTQSVLDGDIDKFIEASLKM 349 >gi|93279782|pdb|2FVO|A Chain A, Docking Of The Modified Rf1 X-Ray Structure Into The Low Resolution Cryo-Em Map Of E.Coli 70s Ribosome Bound With Rf1 Length = 333 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 147/335 (43%), Positives = 205/335 (61%), Gaps = 16/335 (4%) Query: 22 RMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + EYA I I + + + ++ + L Sbjct: 11 LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLR--------------EEG 56 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 L IEK +EL+ LL + I+EIR GTGG EAALF DLFRMY RYA Sbjct: 57 ENELEIEKYEKELDQLYQELLFLLSPEASDKAIVEIRPGTGGEEAALFARDLFRMYTRYA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + W +EV + D GG +E+V + G+ + +K+ESGVHRVQRVP TE+ GR+HTS Sbjct: 117 ERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTS 176 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLPE E D++I ED++I+T RASG GGQ+VN T+SAVRITH+PTGI+V +E Sbjct: 177 TATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ+QN+ A+++LRARLY +++++ E S RK QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 237 RSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RIN T Y+L+ +L G +D+II+ L+ + Sbjct: 297 RINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331 >gi|269850236|gb|ACZ49981.1| peptide chain release factor 2, programmed frameshift [Bacillus anthracis str. Ames] Length = 365 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ K D+ + + H + Sbjct: 26 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHEL 85 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D ILE+ G GG+E+ Sbjct: 86 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNKAILELHPGAGGTES 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 141 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAV Sbjct: 201 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 261 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 319 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 320 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 364 >gi|260587039|ref|ZP_05852952.1| peptide chain release factor 2 [Blautia hansenii DSM 20583] gi|331082810|ref|ZP_08331932.1| peptide chain release factor 2 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542529|gb|EEX23098.1| peptide chain release factor 2 [Blautia hansenii DSM 20583] gi|330400139|gb|EGG79788.1| peptide chain release factor 2 [Lachnospiraceae bacterium 6_1_63FAA] Length = 372 Score = 228 bits (581), Expect = 9e-58, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 182/346 (52%), Gaps = 14/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + R E+E M D + + +S + + IY + + +++++ +I Sbjct: 26 DLENKEKRVEELEREMEAPGFWDNAERSQKMMKELSALKGDMEIYHKLQNQKEEIELMIE 85 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D I Q + ++ + L D + I+ + AG GG+E+ Sbjct: 86 MGYEENDPSIVPDIQEMLDEFIQDFEHI----RIKTLLSGEYDKDNAIVTLHAGAGGTES 141 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+A + + EVL D D+ G K + ++G + +K E GVHR+ Sbjct: 142 CDWASMLYRMYLRWADRQGFSTEVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRL 201 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS + V+P+ E DV+I +D+RIDT R+SG+GGQH+N T SA+ Sbjct: 202 VRISPFNAAGKRQTSFVSCDVMPDIEEDVDVEINPDDLRIDTYRSSGAGGQHINKTSSAI 261 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGD 301 RITH+PTGI+V +E+SQ QN+ +AM++L+A+LY ++++ + S + +IG G+ Sbjct: 262 RITHLPTGIVVQCQNERSQFQNKDKAMQMLKAKLYLLKQQENEKKLSGIQGELTEIGWGN 321 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + DHR N ++ V+ G ID+ IN L Sbjct: 322 ---QIRSYVMQPYTMVKDHRTNEETGNVDAVMNGNIDNFINAYLKW 364 >gi|319779400|ref|YP_004130313.1| Peptide chain release factor 2 [Taylorella equigenitalis MCE9] gi|317109424|gb|ADU92170.1| Peptide chain release factor 2 [Taylorella equigenitalis MCE9] Length = 327 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 178/332 (53%), Gaps = 15/332 (4%) Query: 22 RMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + + K L++E ++ ++ +S +Q ++ +DL+T+ + N DS + + Sbjct: 2 ELEDPNIWNDPEKAQSLSKEKKSLEDVVIVLSELEQSIRDSKDLYTLALEDNDDSTLIAI 61 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + +EK + + + D +C ++I+ G GG+EA + L R Y R Sbjct: 62 EEDSKKYLEKI-----EGLEFRRMFSQPADPLNCFIDIQFGAGGTEAQDWASMLLRQYLR 116 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +K EVL S D G K + G F ++ ESGVHR+ R +++ H Sbjct: 117 YCERKGFKTEVLEESAGDVAGIKSATIKVEGDYAFGLLRTESGVHRLVRKSPFDSANGRH 176 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A++ V PE + +VDI D+RIDT RASG+GGQH+N TDSAVRITH PTGI+V Sbjct: 177 TSFASLYVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVRITHEPTGIVVQC 236 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 +++SQH+N+ AM +L+++LY++E ++ E+ K +G G +IR+Y Q Sbjct: 237 QNDRSQHRNKAEAMSMLKSKLYELELRKRMAEQQKLEESKSDVGWG---HQIRSYVLDQS 293 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R N+ + + VL G +D I L Sbjct: 294 RIKDLRTNVEVSNTQKVLDGDLDMFIEASLKQ 325 >gi|289428601|ref|ZP_06430285.1| peptide chain release factor 1 [Propionibacterium acnes J165] gi|289158295|gb|EFD06514.1| peptide chain release factor 1 [Propionibacterium acnes J165] gi|313807753|gb|EFS46240.1| peptide chain release factor 1 [Propionibacterium acnes HL087PA2] gi|313825434|gb|EFS63148.1| peptide chain release factor 1 [Propionibacterium acnes HL063PA1] gi|314978719|gb|EFT22813.1| peptide chain release factor 1 [Propionibacterium acnes HL072PA2] gi|315088524|gb|EFT60500.1| peptide chain release factor 1 [Propionibacterium acnes HL072PA1] gi|327331707|gb|EGE73444.1| peptide chain release factor 1 [Propionibacterium acnes HL096PA3] gi|327443483|gb|EGE90137.1| peptide chain release factor 1 [Propionibacterium acnes HL013PA2] gi|332675656|gb|AEE72472.1| peptide chain release factor 1 [Propionibacterium acnes 266] Length = 361 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDLT--EEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLRTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|332798808|ref|YP_004460307.1| peptide chain release factor 2 [Tepidanaerobacter sp. Re1] gi|332696543|gb|AEE91000.1| peptide chain release factor 2 [Tepidanaerobacter sp. Re1] Length = 365 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 111/340 (32%), Positives = 183/340 (53%), Gaps = 6/340 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +K ++E + + + + ++ + K + +++ DL T+I Sbjct: 25 IDKIKFEINQLEQKTFAADFWNDQELAQKTLQRLNDLKEKFDNFTLLEKKYDDLLTLIEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++++ +L + ++ ++LE LL D ++ IL + AG GG+EA + Sbjct: 85 C-TETDDEELRTELLNEMKDFKKQLEKMKLQTLLSGKYDG-RNAILTLHAGAGGTEAQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V L RMY R+A + +KV +L D+ G K + G + +K E GVHR+ R+ Sbjct: 143 VSMLLRMYTRWAEDKGYKVSILDMLPGDEAGIKSAAVLVEGPNAYGYLKSEKGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+GR HTS A+V V+P +I++DI ED++IDT R+ G+GGQHVN T+SAVRIT Sbjct: 203 SPFDAAGRRHTSFASVDVMPEIDDDIEIDIKPEDLKIDTFRSGGAGGQHVNKTESAVRIT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG +V +E+SQ NR AMK+LRA+L+D+ ++ E R Q +I Sbjct: 263 HIPTGTVVSCQNERSQQSNRNTAMKILRAKLFDIYQEEQQKELDKIRGSQ-KEIAWGSQI 321 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + DHR ++ + ++ V+ G +D+ IN L Sbjct: 322 RSYIFHPYSLVKDHRTDVEVGNVQAVMDGELDEFINAYLK 361 >gi|229545626|ref|ZP_04434351.1| peptide chain release factor RF2 [Enterococcus faecalis TX1322] gi|229549816|ref|ZP_04438541.1| peptide chain release factor RF2 [Enterococcus faecalis ATCC 29200] gi|255972544|ref|ZP_05423130.1| peptide chain release factor 2 [Enterococcus faecalis T1] gi|255975657|ref|ZP_05426243.1| peptide chain release factor 2 [Enterococcus faecalis T2] gi|256619256|ref|ZP_05476102.1| peptide chain release factor 2 [Enterococcus faecalis ATCC 4200] gi|256853316|ref|ZP_05558686.1| peptide chain release factor 2 [Enterococcus faecalis T8] gi|256959169|ref|ZP_05563340.1| peptide chain release factor 2 [Enterococcus faecalis DS5] gi|256964932|ref|ZP_05569103.1| peptide chain release factor 2 [Enterococcus faecalis HIP11704] gi|257084989|ref|ZP_05579350.1| peptide chain release factor 2 [Enterococcus faecalis Fly1] gi|257087047|ref|ZP_05581408.1| peptide chain release factor 2 [Enterococcus faecalis D6] gi|257419489|ref|ZP_05596483.1| peptide chain release factor [Enterococcus faecalis T11] gi|257422371|ref|ZP_05599361.1| peptide chain release factor [Enterococcus faecalis X98] gi|307273028|ref|ZP_07554274.1| peptide chain release factor 2 [Enterococcus faecalis TX0855] gi|307275776|ref|ZP_07556915.1| peptide chain release factor 2 [Enterococcus faecalis TX2134] gi|307277873|ref|ZP_07558957.1| peptide chain release factor 2 [Enterococcus faecalis TX0860] gi|307291799|ref|ZP_07571670.1| peptide chain release factor 2 [Enterococcus faecalis TX0411] gi|312951693|ref|ZP_07770588.1| peptide chain release factor 2 [Enterococcus faecalis TX0102] gi|229305085|gb|EEN71081.1| peptide chain release factor RF2 [Enterococcus faecalis ATCC 29200] gi|229309284|gb|EEN75271.1| peptide chain release factor RF2 [Enterococcus faecalis TX1322] gi|255963562|gb|EET96038.1| peptide chain release factor 2 [Enterococcus faecalis T1] gi|255968529|gb|EET99151.1| peptide chain release factor 2 [Enterococcus faecalis T2] gi|256598783|gb|EEU17959.1| peptide chain release factor 2 [Enterococcus faecalis ATCC 4200] gi|256711775|gb|EEU26813.1| peptide chain release factor 2 [Enterococcus faecalis T8] gi|256949665|gb|EEU66297.1| peptide chain release factor 2 [Enterococcus faecalis DS5] gi|256955428|gb|EEU72060.1| peptide chain release factor 2 [Enterococcus faecalis HIP11704] gi|256993019|gb|EEU80321.1| peptide chain release factor 2 [Enterococcus faecalis Fly1] gi|256995077|gb|EEU82379.1| peptide chain release factor 2 [Enterococcus faecalis D6] gi|257161317|gb|EEU91277.1| peptide chain release factor [Enterococcus faecalis T11] gi|257164195|gb|EEU94155.1| peptide chain release factor [Enterococcus faecalis X98] gi|306497065|gb|EFM66611.1| peptide chain release factor 2 [Enterococcus faecalis TX0411] gi|306505270|gb|EFM74456.1| peptide chain release factor 2 [Enterococcus faecalis TX0860] gi|306507468|gb|EFM76599.1| peptide chain release factor 2 [Enterococcus faecalis TX2134] gi|306510013|gb|EFM79037.1| peptide chain release factor 2 [Enterococcus faecalis TX0855] gi|310630410|gb|EFQ13693.1| peptide chain release factor 2 [Enterococcus faecalis TX0102] gi|315027919|gb|EFT39851.1| peptide chain release factor 2 [Enterococcus faecalis TX2137] gi|315029504|gb|EFT41436.1| peptide chain release factor 2 [Enterococcus faecalis TX4000] gi|315031977|gb|EFT43909.1| peptide chain release factor 2 [Enterococcus faecalis TX0017] gi|315037173|gb|EFT49105.1| peptide chain release factor 2 [Enterococcus faecalis TX0027] gi|315145002|gb|EFT89018.1| peptide chain release factor 2 [Enterococcus faecalis TX2141] gi|315152286|gb|EFT96302.1| peptide chain release factor 2 [Enterococcus faecalis TX0031] gi|315156087|gb|EFU00104.1| peptide chain release factor 2 [Enterococcus faecalis TX0043] gi|315158272|gb|EFU02289.1| peptide chain release factor 2 [Enterococcus faecalis TX0312] gi|315167276|gb|EFU11293.1| peptide chain release factor 2 [Enterococcus faecalis TX1341] gi|315169439|gb|EFU13456.1| peptide chain release factor 2 [Enterococcus faecalis TX1342] gi|315174820|gb|EFU18837.1| peptide chain release factor 2 [Enterococcus faecalis TX1346] gi|323480920|gb|ADX80359.1| peptide chain release factor 2 [Enterococcus faecalis 62] gi|327535327|gb|AEA94161.1| peptide chain release factor RF2 [Enterococcus faecalis OG1RF] Length = 327 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|255659162|ref|ZP_05404571.1| peptide chain release factor 2 [Mitsuokella multacida DSM 20544] gi|260848613|gb|EEX68620.1| peptide chain release factor 2 [Mitsuokella multacida DSM 20544] Length = 368 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 177/349 (50%), Gaps = 10/349 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ + + AE+E +M E D K + ++ + + Y + +D Sbjct: 19 MGESLEVPAKEEKIAELEYKMGEPTFWDDAEKAQKINQELNDVKISVDKYKNLVAKFEDA 78 Query: 63 HTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 T+ +G D + + + E+ A+ + + L +L D + IL + AG Sbjct: 79 QTLWEMGMEEQDESMEEDVKSELAAVAEGLESL----QLEVLLSGPYDANNAILTLHAGA 134 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EA + L RMY R+A + VE D+ G K I G + ++ E Sbjct: 135 GGTEAQDWTQMLLRMYGRWAERHGFTVETADLLPGDEAGVKSATLFIKGHNAYGFLRSEK 194 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 G+HR+ R+ +A R HTS A ++PE + +V+I + D+R+DT RASG+GGQH+N Sbjct: 195 GIHRLVRISPFDAQARRHTSFAACDIMPEIDDNVEVNINMSDVRVDTYRASGAGGQHINK 254 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH+PTGI+V +E+SQ QNR + +K+LRA+L+++E ++ E + Q Sbjct: 255 TSSAVRMTHMPTGIVVQCQNERSQLQNREQCLKMLRAKLFELEMEKKEAELAKLEGDQQK 314 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + DHR N+ ++ V+ G ID I L A Sbjct: 315 -IEWGSQIRSYVFQPYTMVKDHRTNVETGNVQAVMDGDIDMFIRAFLAA 362 >gi|314955551|gb|EFS99954.1| peptide chain release factor 1 [Propionibacterium acnes HL027PA1] Length = 361 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R +IE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLRDIETQLADSAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|256762748|ref|ZP_05503328.1| peptide chain release factor 2 [Enterococcus faecalis T3] gi|257079206|ref|ZP_05573567.1| peptide chain release factor 2 [Enterococcus faecalis JH1] gi|294779419|ref|ZP_06744820.1| peptide chain release factor 2 [Enterococcus faecalis PC1.1] gi|307269575|ref|ZP_07550914.1| peptide chain release factor 2 [Enterococcus faecalis TX4248] gi|307289302|ref|ZP_07569258.1| peptide chain release factor 2 [Enterococcus faecalis TX0109] gi|256683999|gb|EEU23694.1| peptide chain release factor 2 [Enterococcus faecalis T3] gi|256987236|gb|EEU74538.1| peptide chain release factor 2 [Enterococcus faecalis JH1] gi|294453548|gb|EFG21949.1| peptide chain release factor 2 [Enterococcus faecalis PC1.1] gi|306500011|gb|EFM69372.1| peptide chain release factor 2 [Enterococcus faecalis TX0109] gi|306514195|gb|EFM82771.1| peptide chain release factor 2 [Enterococcus faecalis TX4248] gi|315147459|gb|EFT91475.1| peptide chain release factor 2 [Enterococcus faecalis TX4244] gi|315163916|gb|EFU07933.1| peptide chain release factor 2 [Enterococcus faecalis TX1302] Length = 327 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 102/328 (31%), Positives = 167/328 (50%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D + + + K + Q +E +L + + + ++E Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDTEIQEELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + R LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERL--TTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + +++ Sbjct: 179 SVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + DH Sbjct: 239 SQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N ++ V+ G +D I+ L Sbjct: 298 RTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|307104974|gb|EFN53225.1| hypothetical protein CHLNCDRAFT_25946 [Chlorella variabilis] Length = 360 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 146/354 (41%), Positives = 225/354 (63%), Gaps = 8/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ + + F E++ RM++ Y KL + I + + Y +++ D Sbjct: 9 KLEETEKSFKELQERMADPEVSGNNTGYQKLVRAVSDIQDAVDGYTAYKDLERQLADAKE 68 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D E+ +LA+ E+ A++ I + + YLLLPKD D+K+ +LE+RAGTGG E Sbjct: 69 LLKESEGDPEMAELAREEMEALQAAIEQQGERLKYLLLPKDPLDEKNIMLEVRAGTGGEE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AAL+ DL RMY++YA + WKV ++S S + GGYKE V I+G ++K+ESGVHR Sbjct: 129 AALWAADLIRMYQKYADTQGWKVSLMSESSAEAGGYKECVLQITGD---RQLKYESGVHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE SGRVHTS ATVA++PE ++ V I +DI + T RA G+GGQ+VN ++AV Sbjct: 186 VQRVPATETSGRVHTSTATVAIMPEVDDVAVKIDPKDIALTTARAGGAGGQNVNKVETAV 245 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H PTGI + E++Q +NR RAM +LRA+L+++E ++ +E SA RK Q+G+G RS Sbjct: 246 DLMHKPTGIRIFCQEERTQGRNRERAMALLRAKLFELELEKQRSEISARRKSQVGTGSRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+I+TYN+ R++DHR + Y L V++G +D+ I ++ Q +M+ E Sbjct: 306 EKIKTYNYKDTRMSDHRSKIN-YDLNKVMEGALDECIQTMVMLDQQEMLRDLLE 358 >gi|227518951|ref|ZP_03949000.1| peptide chain release factor RF2 [Enterococcus faecalis TX0104] gi|227553571|ref|ZP_03983620.1| peptide chain release factor RF2 [Enterococcus faecalis HH22] gi|256961736|ref|ZP_05565907.1| peptide chain release factor 2 [Enterococcus faecalis Merz96] gi|293383442|ref|ZP_06629355.1| peptide chain release factor 2 [Enterococcus faecalis R712] gi|293388904|ref|ZP_06633389.1| peptide chain release factor 2 [Enterococcus faecalis S613] gi|312907729|ref|ZP_07766720.1| peptide chain release factor 2 [Enterococcus faecalis DAPTO 512] gi|312910347|ref|ZP_07769194.1| peptide chain release factor 2 [Enterococcus faecalis DAPTO 516] gi|227073640|gb|EEI11603.1| peptide chain release factor RF2 [Enterococcus faecalis TX0104] gi|227177301|gb|EEI58273.1| peptide chain release factor RF2 [Enterococcus faecalis HH22] gi|256952232|gb|EEU68864.1| peptide chain release factor 2 [Enterococcus faecalis Merz96] gi|291079233|gb|EFE16597.1| peptide chain release factor 2 [Enterococcus faecalis R712] gi|291081685|gb|EFE18648.1| peptide chain release factor 2 [Enterococcus faecalis S613] gi|310626757|gb|EFQ10040.1| peptide chain release factor 2 [Enterococcus faecalis DAPTO 512] gi|311289620|gb|EFQ68176.1| peptide chain release factor 2 [Enterococcus faecalis DAPTO 516] gi|315576028|gb|EFU88219.1| peptide chain release factor 2 [Enterococcus faecalis TX0309B] gi|315580603|gb|EFU92794.1| peptide chain release factor 2 [Enterococcus faecalis TX0309A] Length = 327 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEEIDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|308198348|ref|YP_003933612.1| peptide chain release factor I [Pseudomonas aeruginosa PAO1] gi|307752087|gb|ADN93061.1| peptide chain release factor I [Pseudomonas aeruginosa PAO1] Length = 364 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + + + L E A ++ ++ + + +DL + Sbjct: 27 DQKHDRLVEVNRELEDPNVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + D+A E + + + + D + L+I+AG+GG+EA Sbjct: 87 VEEDDEGAVDDVANEVERLREILEK-----LEFRRMFSGEMDPNNAYLDIQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + ++ S+ + G K I G F ++ E GVHR+ Sbjct: 142 DWANMLLRMYLRWADKHGFDATIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 202 RKSPFDSGNRRHTSFTAVFVSPEIDDNIEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY++E ++ A++ + K IG G Sbjct: 262 ITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELEMQKRTAASQALEDSKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + VL G +D+ + L Sbjct: 320 -HQIRSYVLDQSRIKDLRTGIERSDCDKVLDGDLDEYLEASLKQ 362 >gi|224552865|gb|ACN55074.1| peptide chain release factor 2, programmed frameshift [Bacillus anthracis str. 'Ames Ancestor'] Length = 365 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 113/348 (32%), Positives = 174/348 (50%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + + AE+E +M + D + ++ K D+ + + H Sbjct: 25 DLPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L I++ LL D D ILE+ G GG+E Sbjct: 85 LLKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNKAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR Sbjct: 140 SQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 260 VRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 320 ---SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 364 >gi|306818471|ref|ZP_07452194.1| peptide chain release factor RF1 [Mobiluncus mulieris ATCC 35239] gi|304648644|gb|EFM45946.1| peptide chain release factor RF1 [Mobiluncus mulieris ATCC 35239] Length = 366 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 140/361 (38%), Positives = 201/361 (55%), Gaps = 19/361 (5%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L +A +E MS+ ++ YA + + + + + + + + + Sbjct: 11 VEPLLEEYAAVEREMSDPDLHSDQSRARRVGRRYAELGRVAAAARAFLEAQDDLEAGREM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + A L L P+D DD + I+EI+AG GG E+ Sbjct: 71 AAE---DPDFAAELPKLQEAFYTVQAALIEI----LTPRDPDDARDVIMEIKAGEGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY+ YA W V++L +++D GG K+ GV++ +K+ Sbjct: 124 ALFAGDLMRMYQHYAEKMGWAVQILGLTESDLGGVKDAQIAFKAKGNPTPEEGVWAHLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSAA V V+PEA E D++I D+RID R+SG GGQ V Sbjct: 184 EGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEETGDIEIDPNDLRIDVYRSSGPGGQSV 243 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITHIPTGI+V+ +EKSQ QN+ M+VLR+RL +E+++ E + R Q Sbjct: 244 NTTDSAVRITHIPTGIVVSMQNEKSQLQNKEAGMRVLRSRLMQLEQEKREAEAAEARASQ 303 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI DHR Y L+ VL G + +I + A +A + + Sbjct: 304 VRTVDRSERIRTYNFPENRIADHRTGYKAYNLDAVLNGELAPVIQSAIDADEAARLAAVG 363 Query: 357 E 357 E Sbjct: 364 E 364 >gi|298346212|ref|YP_003718899.1| peptide subunit release factor RF1 [Mobiluncus curtisii ATCC 43063] gi|304390026|ref|ZP_07371980.1| peptide chain release factor RF1 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|298236273|gb|ADI67405.1| peptide chain release factor RF1 [Mobiluncus curtisii ATCC 43063] gi|304326508|gb|EFL93752.1| peptide chain release factor RF1 [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 367 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 143/360 (39%), Positives = 207/360 (57%), Gaps = 19/360 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + ++E++MS+ K+ YA +S + + + + Q + + + + Sbjct: 11 VEALLEEYHQLEVQMSDPDLHSNQAHARKVGRRYAELSRVNTVVQSWLQARDDLEAGREM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 G+ D + A E+ +L L P+D DD + I+EI+AG GG E+ Sbjct: 71 AGE---DPDFAAEIPGLEAAFEQANADLIE----ALTPRDPDDARDVIMEIKAGEGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY+ YA W V+VL +++D GG K+ GV++ +K+ Sbjct: 124 ALFAGDLMRMYQHYAEKMGWAVQVLGLTESDLGGVKDASIAFKAKGNPSPEEGVWAHLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSAA V V+PEA E D++I D+RID R+SG GGQ V Sbjct: 184 EGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEETGDIEIDPNDLRIDVYRSSGPGGQSV 243 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V+ +EKSQ QN+ M+VLR+RL +E ++ E + R Q Sbjct: 244 NTTDSAVRITHLPTGIVVSMQNEKSQLQNKEAGMRVLRSRLMQLEAEKREAEAAEARASQ 303 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI DHR Y L+ VL G + +I + A +A + + Sbjct: 304 VRTVDRSERIRTYNFPENRIADHRTGYKAYNLDQVLNGDLAPVIQSAIDADEAARLAAVG 363 >gi|315657282|ref|ZP_07910164.1| peptide chain release factor RF1 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491754|gb|EFU81363.1| peptide chain release factor RF1 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 367 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 143/360 (39%), Positives = 207/360 (57%), Gaps = 19/360 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + ++E++MS+ K+ YA +S + + + + Q + + + + Sbjct: 11 VEALLEEYHQLEVQMSDPDLHSNQAHARKVGRRYAELSRVNTVVQSWLQARDDLEAGREM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 G+ D + A E+ +L L P+D DD + I+EI+AG GG E+ Sbjct: 71 AGE---DPDFAAEIPGLEAAFEQSNADLIE----ALTPRDPDDARDVIMEIKAGEGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY+ YA W V+VL +++D GG K+ GV++ +K+ Sbjct: 124 ALFAGDLMRMYQHYAEKMGWTVQVLGLTESDLGGVKDASIAFKAKGNPSPEEGVWAHLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSAA V V+PEA E D++I D+RID R+SG GGQ V Sbjct: 184 EGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEETGDIEIDPNDLRIDVYRSSGPGGQSV 243 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V+ +EKSQ QN+ M+VLR+RL +E ++ E + R Q Sbjct: 244 NTTDSAVRITHLPTGIVVSMQNEKSQLQNKEAGMRVLRSRLMQLEAEKREAEAAEARASQ 303 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI DHR Y L+ VL G + +I + A +A + + Sbjct: 304 VRTVDRSERIRTYNFPENRIADHRTGYKAYNLDQVLNGDLAPVIQSAIDADEAARLAAVG 363 >gi|257066737|ref|YP_003152993.1| peptide chain release factor 2 [Anaerococcus prevotii DSM 20548] gi|256798617|gb|ACV29272.1| bacterial peptide chain release factor 2 (bRF- 2) [Anaerococcus prevotii DSM 20548] Length = 367 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 168/341 (49%), Gaps = 8/341 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ E+E + + + K + A ++ ++S Y + + D ++ Sbjct: 28 ASLEKEIKELEKQSASPDFWNDSDKAQKIMADLASKKDELSDYKKLENGLVDNTDMLDLV 87 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 E EV K + +L ++ D + + I AG GG EA + Sbjct: 88 EMSEEKETDTIEEVEDSLKNLAKLATQMKLRTQLDGEYDKNNAYISINAGAGGLEATDWA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY+RY +K E+ ++ + GG K ++G + +K E GVHR+ R+ Sbjct: 148 DMLFRMYKRYFDSIGFKYEIKDLNNEEAGGIKSATMHVTGPYAYGYLKAEKGVHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ R HTS A+V V PE I++DI D+RIDT RASG+GGQHVN TDSAVRITH Sbjct: 208 PFDSQSRRHTSFASVDVFPELDENIELDIDPSDLRIDTYRASGAGGQHVNKTDSAVRITH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSER 305 IPTG++ + +E+SQ QNR AM +L+++L ++ + + + QI G + Sbjct: 268 IPTGVVATSQAERSQIQNRQTAMNLLKSKLVQIKEEEQREKIEDIQGSYSQIAWG---SQ 324 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y F + DHR + +E V+ G I I+ L Sbjct: 325 IRSYVFQPYTLVKDHRTGFEMGNVEAVMDGDIQGFIDAFLA 365 >gi|121608134|ref|YP_995941.1| peptide chain release factor 2 [Verminephrobacter eiseniae EF01-2] gi|121552774|gb|ABM56923.1| bacterial peptide chain release factor 2 (bRF-2) [Verminephrobacter eiseniae EF01-2] Length = 381 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 167/344 (48%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R ++ + + + K L +E ++ ++S + ++ + +L + Sbjct: 44 DAKFERLRTVDAALQDPAVWNDPKKAQALGKEKKSLDDVVSMLDKLGRELADNTELFEMS 103 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D+ + L I +LE + + C ++I+AG GG+EA Sbjct: 104 KQEGDDAGLLALQAEAARL-RPGIEQLEFRRMFSKEADALN----CFVDIQAGAGGTEAC 158 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L R Y RYA + +K V + D G K + G + ++ E+GVHR+ Sbjct: 159 DWAGMLLRQYLRYAERKGFKATVEEETPGDVAGLKSATIKVEGEYAYGLLRTETGVHRLV 218 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +DI D+R DT R+SG+GGQH+N TDSAVR Sbjct: 219 RKSPFDSSGGRHTSFASLFVYPEIDDSIQIDINPADVRTDTFRSSGAGGQHINKTDSAVR 278 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH+PTGI+V +SQH NR A + LR+RLYD ER+ E+ + K +G G Sbjct: 279 LTHLPTGIVVQCQDGRSQHGNRDIAWQRLRSRLYDHERRLRQQEQQKLEDSKTDVGWG-- 336 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R ++ + + VL G +D I L Sbjct: 337 -HQIRSYVLDNSRIKDLRTHVEISATQKVLDGDLDAFIEAALKQ 379 >gi|317497043|ref|ZP_07955371.1| peptide chain release factor 2 [Lachnospiraceae bacterium 5_1_63FAA] gi|316895703|gb|EFV17857.1| peptide chain release factor 2 [Lachnospiraceae bacterium 5_1_63FAA] Length = 333 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 168/338 (49%), Gaps = 12/338 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D + +E ++ ++ + K ++ + L + + I + Sbjct: 1 MEEPGFWDNVEESQNVMKEVKSLKGVVEEYDDLKTKYEDIETLIDMAEEDEDADLIEEAT 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + L D IL + AG GG+E+ + G L+RM+ R+ Sbjct: 61 ALMDEFEKTYEE-----LRISTLLTGEYDKDDAILTLHAGAGGTESCDWAGMLYRMFTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + + EVL D D+ G K + I+G + ++ E GVHR+ R+ A+G+ T Sbjct: 116 AGKKGYGTEVLDYLDGDEAGIKSVTVKITGMNAYGYLRSEKGVHRLVRISPFNAAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+ V+P+ + +V+I EDIRIDT RASG+GGQH+N TDSA+RITH+PTGI+V Sbjct: 176 SFASCDVMPDIKDDIEVEIADEDIRIDTYRASGAGGQHINKTDSAIRITHLPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH+N+ +AMK+L+ +LY +++++ + S R +G +IR+Y + Sbjct: 236 NERSQHKNKDQAMKMLKTKLYLLKQQQHLEKLSDIR-GDVGDNGWGNQIRSYVLQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DHR N VL G +D +N L Sbjct: 295 KDHRTNFESGNPSAVLDGDLDGFMNAYLAWDNNSKKEE 332 >gi|257090077|ref|ZP_05584438.1| peptide chain release factor [Enterococcus faecalis CH188] gi|312903512|ref|ZP_07762692.1| peptide chain release factor 2 [Enterococcus faecalis TX0635] gi|256998889|gb|EEU85409.1| peptide chain release factor [Enterococcus faecalis CH188] gi|310633388|gb|EFQ16671.1| peptide chain release factor 2 [Enterococcus faecalis TX0635] gi|315162421|gb|EFU06438.1| peptide chain release factor 2 [Enterococcus faecalis TX0645] gi|315577792|gb|EFU89983.1| peptide chain release factor 2 [Enterococcus faecalis TX0630] Length = 327 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 174/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|293449213|ref|ZP_06663634.1| peptide chain release factor 2 [Escherichia coli B088] gi|332280425|ref|ZP_08392838.1| peptide chain release factor RF-2 [Shigella sp. D9] gi|291322303|gb|EFE61732.1| peptide chain release factor 2 [Escherichia coli B088] gi|332102777|gb|EGJ06123.1| peptide chain release factor RF-2 [Shigella sp. D9] Length = 332 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 177/337 (52%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + + + L +E +++ ++ + Q ++ L + + + + Sbjct: 2 EEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEE 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + A + E ++ + + D C L+I+AG+GG+EA + L Sbjct: 62 TFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLE 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A R +K E++ S+ + G K + ISG + ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 GR HTS ++ V PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPTG Sbjct: 177 GGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTY 309 I+ +++SQH+N+ +AMK ++A+LY++E ++ E+ + K IG G +IR+Y Sbjct: 237 IVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D I L A Sbjct: 294 VLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 330 >gi|331007552|ref|ZP_08330709.1| tRNA pseudouridine synthase D, TruD [gamma proteobacterium IMCC1989] gi|330418642|gb|EGG93151.1| tRNA pseudouridine synthase D, TruD [gamma proteobacterium IMCC1989] Length = 347 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + AE+EL ++E + L +E A++ I+ I D + ++L + Sbjct: 10 DAKQEQLAEVELELAEPEVWNDPARAQALGQERASLEAIVGTIQTLDTGVVDARELLDMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + +S + D+ + + + + + + D + L+I++G+GG+EA Sbjct: 70 VEEGDESILIDVQDEIDVLSAQLGK-----LEFRRMFSGETDANNAYLDIQSGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ R +K + +S D G K G F ++ E+GVHR+ Sbjct: 125 DWAEMVLRMYLRWGEARGFKTTLEEASAGDVAGIKSATIRFEGEYAFGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++S R HTS +V V PE +VD+ ++R DT RASG+GGQHVN TDSAVR Sbjct: 185 RKSPFDSSSRRHTSFCSVFVSPEIDDNFEVDVDKSEVREDTYRASGAGGQHVNKTDSAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 +TH +GI+V S++SQHQNR A K+LRARLY+ E +R + + K IG G Sbjct: 245 LTHEASGIVVQCQSQRSQHQNRDTAWKMLRARLYEQELQRRNADKQAQEDNKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + VL G +D I L A Sbjct: 303 -SQIRSYVLDDQRIKDLRTNVQTSNCQAVLDGSLDQFIEASLKA 345 >gi|254468217|ref|ZP_05081623.1| peptide chain release factor 2 [beta proteobacterium KB13] gi|207087027|gb|EDZ64310.1| peptide chain release factor 2 [beta proteobacterium KB13] Length = 351 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 178/346 (51%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + K + E+ + + + K+ +E + I + + + ++L Sbjct: 12 DLDNKKEQLKELTRQQEDPKIWEDHSLSQKIGKEKRILEDTIQEFEQLNSGIENNKELFD 71 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + DS + D + + + ++ + + + D +C ++ ++G+GG+E Sbjct: 72 LAFEESDDSTLND-----LFQDTINLDKKLGQLEFKRMFSNPLDPNNCFIDFQSGSGGTE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY RY + +KVEV+ ++ + G K I G + + E+G+HR Sbjct: 127 AQDWANMLLRMYLRYCEEKGFKVEVMEITEGEVAGIKGATIKIIGDYAYGYFRTETGIHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R ++ R HTS A V V PE E ++DI D+RIDT RASG+GGQH+N TDSA Sbjct: 187 LVRKSPFDSGSRRHTSFAGVNVYPEIDESVEIDINPADLRIDTYRASGAGGQHINKTDSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH P+G++V +++SQH+N+ +AM +L+A+LY +E + E+ A K IG G Sbjct: 247 VRITHEPSGVVVQCQNDRSQHRNKAQAMDMLKAQLYRIELDKRNEEKQAMEDAKSDIGWG 306 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + + VL G +D I L Sbjct: 307 ---HQIRSYVLDQSRIKDLRTGVEVGNTQGVLDGNLDPFITESLKQ 349 >gi|312901832|ref|ZP_07761097.1| peptide chain release factor 2 [Enterococcus faecalis TX0470] gi|311291025|gb|EFQ69581.1| peptide chain release factor 2 [Enterococcus faecalis TX0470] Length = 327 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 173/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQV 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|327454116|gb|EGF00771.1| peptide chain release factor 1 [Propionibacterium acnes HL083PA2] Length = 361 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 131/364 (35%), Positives = 203/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDSSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDLT--EEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|217976907|ref|YP_002361054.1| hypothetical protein Msil_0721 [Methylocella silvestris BL2] gi|217502283|gb|ACK49692.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 376 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 170/347 (48%), Gaps = 10/347 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + + R AE+ ++ + D + + + ++ + E D T+ Sbjct: 22 HLDVATAERRLAELNAKVEDPNLWDDADAAQKIMRERTDLEDRLGSLARFDSELDDAVTL 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + ++ + + ++ L D +E+ +G GG+E+ Sbjct: 82 VELAEAEEDTATEKEAIGQLKSLKLEA--ERRQIEALLSGEVDGNDTYIEVHSGAGGTES 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + LFRMY R+A K+KVEV+ + D+ G K + G K ESGVHR+ Sbjct: 140 CDWARMLFRMYARWAERHKFKVEVIEETAGDEAGLKSGTLLVKGHNAHGWAKTESGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS A+V V P +ID+D+ D RIDT R+SG+GGQHVNTTDSAV Sbjct: 200 VRISPFDSNARRHTSFASVWVYPVIDDKIDIDVKESDCRIDTYRSSGAGGQHVNTTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIP+GI+V E+SQH+NR A +LRARLY+ E ++ +A K +IG G Sbjct: 260 RITHIPSGIVVACQGERSQHKNRATAWNMLRARLYEQEIEKREAAANATEASKTEIGWG- 318 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R +T + VL G +D + L Sbjct: 319 --HQIRSYVLQPYQLVKDLRSGVTSGTPDDVLDGDLDSFMEAALAQR 363 >gi|310644311|ref|YP_003949070.1| protein chain release factor b-like protein [Paenibacillus polymyxa SC2] gi|309249262|gb|ADO58829.1| Protein chain release factor B-like protein [Paenibacillus polymyxa SC2] Length = 339 Score = 228 bits (580), Expect = 1e-57, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 176/335 (52%), Gaps = 6/335 (1%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 A E +M+ D K A ++ + S + Y+Q +QE +D ++ + + Sbjct: 2 IANFEEKMAAPDFWDDNEKAQGVIAEMNVVKSSVDSYEQLRQEYEDAGMMVELAEEEGD- 60 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + EV K + E LL D + ILE+ G GG+E+ + L RM Sbjct: 61 -EALVGEVENSIKSLLSKLEEFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRM 119 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+ R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SG Sbjct: 120 YTRWGEKRGFKVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179 Query: 196 RVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 R HTS + V+PE ++D++I ED++IDT RASG+GGQH+NTTDSAVRITH+PTGI+ Sbjct: 180 RRHTSFVSCDVVPEIADDVDIEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGIV 239 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V +E+SQ +NR RAM +LR++LY+ + + + R Q +IR+Y F Sbjct: 240 VTCQNERSQIKNRERAMTMLRSKLYERKIEEQQQQLDEIRGEQ-SDIAWGSQIRSYVFHP 298 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR ++ + V+ G +D I+ L + Sbjct: 299 YSMVKDHRTSVETGNVGAVMDGDLDPFIDGYLRSQ 333 >gi|300933612|ref|ZP_07148868.1| peptide chain release factor 1 [Corynebacterium resistens DSM 45100] Length = 353 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 140/358 (39%), Positives = 208/358 (58%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + +E ++ + + K+ + ++ + PII +Q +++ + + Sbjct: 2 VDDILAEYQGLEAQLGDPELHNDPAAARKVGKRFSELQPIIQTHQQLEQAREDHEAAAEM 61 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E +E EI ELE ++ LL P+D D ++EI++G GG EA Sbjct: 62 ASEDAEFAEEAK-------RLETEIAELEEKLTDLLAPRDPHDGDDIVMEIKSGAGGEEA 114 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + EVL ++ D GG K++ +I + ++ KFE Sbjct: 115 ALFAGELARMYQRYAERHGFATEVLDLNETDLGGVKDMTMSIRSKQPSRDGAWAEFKFEG 174 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQR+P TE+ GR+ TSAA V V PE E DV I +D+RID R+SG GGQ VNT Sbjct: 175 GVHRVQRIPVTESQGRIQTSAAGVLVYPEPDEVEDVQIDEKDLRIDVYRSSGKGGQGVNT 234 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QN+ RAM+VL ARL +E ++ E + R QI Sbjct: 235 TDSAVRITHLPTGVVVTCQKERSQIQNKARAMQVLAARLQQMEEEKAEAEAAEGRAAQIR 294 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYNF + R++DHRI L+ VL G ++ + L A +A+ + + S Sbjct: 295 TMDRSERIRTYNFPESRVSDHRIGYKANNLDAVLGGDLESLFAALKDADRARRLEAES 352 >gi|254497462|ref|ZP_05110255.1| peptide chain release factor 2 [Legionella drancourtii LLAP12] gi|254353277|gb|EET12019.1| peptide chain release factor 2 [Legionella drancourtii LLAP12] Length = 335 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 107/337 (31%), Positives = 167/337 (49%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + S + L E + ++ +S Q + +L + + N + Sbjct: 2 EEVVRELESSTVWNNPEVAQALGRERTQLENVVFTLSGLSQSIIDLTELFELAREENDEQ 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 I ++ A + I + ++ + + D + L+I++G+GG+EA + L Sbjct: 62 AINEIG-----AELETIEQKVADLEFRRMFSGRMDGCNAYLDIQSGSGGTEAQDWAEMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+ + E++ S D G K G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWGEQHGFTTELIECSPGDVAGIKSATIYFQGEYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V + PE + D+RIDT RASG+GGQHVN TDSAVRITH P+G Sbjct: 177 GNRRHTSFAAVFISPEIDDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHAPSG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +AMK LRA+LY++E ++ E+ A K IG G +IR+Y Sbjct: 237 IVVQCQNDRSQHRNKDQAMKQLRAKLYELEMQKKNAEQQALEASKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D I L A Sbjct: 294 VLDQSRIKDLRTGVETSNTQAVLDGALDQFIEASLKA 330 >gi|332284056|ref|YP_004415967.1| peptide chain release factor 2 [Pusillimonas sp. T7-7] gi|330428009|gb|AEC19343.1| peptide chain release factor 2 [Pusillimonas sp. T7-7] Length = 359 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + L E ++ ++ ++ + Q+L + Sbjct: 22 DAKAERLHVVNAELESPDVWNDPKHAQDLGREKKSLETVVHTLADIANGLTDAQELFDLA 81 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + D+ + + + + + + + D +C ++I+AG GG+EA Sbjct: 82 AEDDDDATLAAVEADTNAIGARLEE-----LEFRRMFSNPADPLNCFMDIQAGAGGTEAQ 136 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y RY + +K EVL SD D G K I G F ++ E+GVHR+ Sbjct: 137 DWASILLRQYLRYCEHKDFKTEVLEESDGDVAGIKSATIKIEGEYAFGLLRTETGVHRLV 196 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS A+V V PE E ++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 197 RKSPFDSANGRHTSFASVFVYPEVDESVEIDINPADLRVDTYRASGAGGQHINKTDSAVR 256 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +++SQH+NR AM +L++RLY++E + E+ + K +G G Sbjct: 257 ITHMPTGIVVQCQNDRSQHRNRAEAMSMLKSRLYELEMRNRMAEQQKMEDSKTDVGWG-- 314 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 315 -HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 357 >gi|262373739|ref|ZP_06067017.1| peptide chain release factor 2 [Acinetobacter junii SH205] gi|262311492|gb|EEY92578.1| peptide chain release factor 2 [Acinetobacter junii SH205] Length = 351 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 100/340 (29%), Positives = 164/340 (48%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ + + + + +E ++ + ++ + + + + + + Sbjct: 18 ERLEEVLRELEDPAIWNDQSRAQAIAKEKGSLENTLGVFDRLAEQLDDAKAMLDLAVEAD 77 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +S + D+ + + + + + D C LEI++G+GG+EA + Sbjct: 78 DESLLEDVQAE-----LDSAEQALGNLEFRRMFSNPMDPNPCFLEIQSGSGGTEAQDWAS 132 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ +K E++ SD D G K + G + ++ ESGVHR+ R Sbjct: 133 MLLRMYMRWIERHGFKAELMEVSDGDVAGIKSATIRVDGEFAYGWLRTESGVHRLVRKSP 192 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ HTS + V V PE + ++DI D+R DT RASG+GGQH+N TDSAVR+TH Sbjct: 193 FDSNNNRHTSFSAVFVSPEIDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHA 252 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI+V +++SQH NR A K LRA+LY++E + + K IG G +I Sbjct: 253 PTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMSKRNEAAQALEDSKSDIGWG---SQI 309 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G +D I L Sbjct: 310 RSYVLDDSRIKDLRTGVENSNTKAVLDGDLDKFIEASLKQ 349 >gi|172058432|ref|YP_001814892.1| peptide chain release factor 2 [Exiguobacterium sibiricum 255-15] gi|229576666|sp|B1YLH0|RF2_EXIS2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|171990953|gb|ACB61875.1| peptide chain release factor 2 [Exiguobacterium sibiricum 255-15] Length = 366 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 166/346 (47%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHT 64 + +R E+E M+ + + E + ++ K + + Sbjct: 25 DLETKISRIEELENEMTYPDFWNNQESAQKVIDESNGLKAMVDKYQHLADGHENIVLTYE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + +L +K +L D + ILE+ G GG+E Sbjct: 85 LIKEEPDVELQEELESELGDIKKKFDE-----FELQILLNGEYDANNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+R+ + WKVE + D+ G K + I G + +K E G+HR Sbjct: 140 SQDWASMLLRMYQRFCDKQGWKVETMDYQPGDEAGVKSVTLRIQGHNAYGYLKAEKGIHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS + V+PE + D++I ED+R+DT RASG+GGQH+NTTDSA Sbjct: 200 LVRISPFDSSGRRHTSFVSCDVMPEFNDDIDIEIRTEDLRVDTYRASGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH+PTG++V E+SQ +NR AMK+L+A+LY E + + R K I G Sbjct: 260 VRITHVPTGVVVSCQQERSQIKNREAAMKMLKAKLYQREIEEKQKKLDEIRGEKSDIAWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + + + G I I+ L Sbjct: 320 ---SQIRSYVFHPYSMVKDHRTNYEVGNTQGAMDGDIMGFIDAYLR 362 >gi|212710038|ref|ZP_03318166.1| hypothetical protein PROVALCAL_01091 [Providencia alcalifaciens DSM 30120] gi|212687245|gb|EEB46773.1| hypothetical protein PROVALCAL_01091 [Providencia alcalifaciens DSM 30120] Length = 329 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 178/334 (53%), Gaps = 15/334 (4%) Query: 20 ELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + L +E +++ I+ I Q ++ + L + + D E Sbjct: 2 NAELEQPDVWNEPERAQALGKERSSLEAIVETIDQLTQGIEDVEGLLELAVEA-DDEETF 60 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + A E+ A++ ++ +LE + + D C ++++AG+GG+EA + L RMY Sbjct: 61 NEAGAELDALQGKLEQLE----FRRMFSGEYDSADCYIDLQAGSGGTEAQDWASMLMRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + +K E++ SD D G K I G + ++ E+GVHR+ R ++ GR Sbjct: 117 LRWAESKGFKTEIIEESDGDVAGLKSATIKIIGDYAYGWLRTETGVHRLVRKSPFDSGGR 176 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS ++ + PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ Sbjct: 177 RHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVT 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFS 312 +++SQH+N+ +AM+ L+A+LY++E ++ ++ K IG G +IR+Y Sbjct: 237 QCQNDRSQHKNKDQAMRQLKAKLYELEMQKKNADKQAMEENKSDIGWG---SQIRSYVLD 293 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D I L A Sbjct: 294 DARIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 327 >gi|315654795|ref|ZP_07907700.1| peptide chain release factor RF1 [Mobiluncus curtisii ATCC 51333] gi|315490756|gb|EFU80376.1| peptide chain release factor RF1 [Mobiluncus curtisii ATCC 51333] Length = 367 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 143/360 (39%), Positives = 207/360 (57%), Gaps = 19/360 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + ++E++MS+ K+ YA +S + + + + Q + + + + Sbjct: 11 VEALLEEYHQLEVQMSDPDLHSNQAHARKVGRRYAELSRVNTVVQGWLQARDDLEAGREM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 G+ D + A E+ +L L P+D DD + I+EI+AG GG E+ Sbjct: 71 AGE---DPDFAAEIPGLEAAFEQANADLIE----ALTPRDPDDARDVIMEIKAGEGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY+ YA W V+VL +++D GG K+ GV++ +K+ Sbjct: 124 ALFAGDLMRMYQHYAEKMGWTVQVLGLTESDLGGVKDASIAFKAKGNPSPEEGVWAHLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSAA V V+PEA E D++I D+RID R+SG GGQ V Sbjct: 184 EGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEETGDIEIDPNDLRIDVYRSSGPGGQSV 243 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V+ +EKSQ QN+ M+VLR+RL +E ++ E + R Q Sbjct: 244 NTTDSAVRITHLPTGIVVSMQNEKSQLQNKEAGMRVLRSRLMQLEAEKREAEAAEARASQ 303 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI DHR Y L+ VL G + +I + A +A + + Sbjct: 304 VRTVDRSERIRTYNFPENRIADHRTGYKAYNLDQVLNGDLAPVIQSAIDADEAARLAAVG 363 >gi|227875209|ref|ZP_03993351.1| peptide chain release factor 1 [Mobiluncus mulieris ATCC 35243] gi|269978100|ref|ZP_06185050.1| peptide chain release factor 1 [Mobiluncus mulieris 28-1] gi|307700819|ref|ZP_07637844.1| peptide chain release factor 1 [Mobiluncus mulieris FB024-16] gi|227844114|gb|EEJ54281.1| peptide chain release factor 1 [Mobiluncus mulieris ATCC 35243] gi|269933609|gb|EEZ90193.1| peptide chain release factor 1 [Mobiluncus mulieris 28-1] gi|307613814|gb|EFN93058.1| peptide chain release factor 1 [Mobiluncus mulieris FB024-16] Length = 366 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 139/361 (38%), Positives = 202/361 (55%), Gaps = 19/361 (5%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L +A +E MS+ ++ YA + + + + + + + + + Sbjct: 11 VEPLLEEYAAVEREMSDPDLHSDQSRARRVGRRYAELGRVAAAARAFLEAQDDLEAGREM 70 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + A + L L P+D DD + I+EI+AG GG E+ Sbjct: 71 AAE---DPDFAAELPKLQEAFDTVQAALIEI----LTPRDPDDARDVIMEIKAGEGGEES 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF GDL RMY+ YA W V++L +++D GG K+ GV++ +K+ Sbjct: 124 ALFAGDLMRMYQHYAEKMGWAVQILGLTESDLGGVKDAQIAFKAKGNPTPEEGVWAHLKY 183 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSAA V V+PEA E D++I D+RID R+SG GGQ V Sbjct: 184 EGGVHRVQRVPVTESQGRIHTSAAGVLVMPEAEETGDIEIDPNDLRIDVYRSSGPGGQSV 243 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTGI+V+ +EKSQ QN+ M+VLR+RL +E+++ E + R Q Sbjct: 244 NTTDSAVRITHLPTGIVVSMQNEKSQLQNKEAGMRVLRSRLMQLEQEKREAEAAEARASQ 303 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + DRSERIRTYNF + RI DHR Y L+ VL G + +I + A +A + + Sbjct: 304 VRTVDRSERIRTYNFPENRIADHRTGYKAYNLDAVLNGELAPVIQSAIDADEAARLAAVG 363 Query: 357 E 357 E Sbjct: 364 E 364 >gi|218900306|ref|YP_002448717.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus G9842] gi|218544557|gb|ACK96951.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus G9842] Length = 380 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 111/347 (31%), Positives = 174/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMSAGFWDDQQGAQAVINEANALKDMVGSFRQLDETFENLEVTHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + + R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|225572941|ref|ZP_03781696.1| hypothetical protein RUMHYD_01132 [Blautia hydrogenotrophica DSM 10507] gi|225039699|gb|EEG49945.1| hypothetical protein RUMHYD_01132 [Blautia hydrogenotrophica DSM 10507] Length = 348 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 184/343 (53%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + R E+E M D + ++ + + + Y+ + + +D+ T+I Sbjct: 1 MANKEKRIEELEREMEAPDFWDDAEESQKKMKELKYMKDDLQTYENLRTQMEDMETLIEM 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +++ + +I+ + E + ++I L D I+ + AG GG+E+ + Sbjct: 61 GYEENDPDLIPEIQEMLDEFQKSF--DDIRVKTLLSGEYDSNDAIVTLHAGAGGTESCDW 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+A + + +EVL D D+ G K + + G + +K E GVHR+ R+ Sbjct: 119 ASMLYRMYTRWADKKGFSLEVLDYLDGDEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRI 178 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS + V+P+ E DV+I +DIR+DT R+SG+GGQH+N T SA+RIT Sbjct: 179 SPFNAAGKRQTSFVSCDVMPDIEEDVDVEIRDDDIRVDTYRSSGAGGQHINKTSSAIRIT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSE 304 H+PTGI+V +E+SQH N+ +AM++L+A+LY ++++ + S R +IG G+ Sbjct: 239 HLPTGIVVQCQNERSQHMNKDKAMQMLKAKLYLLKQQENEEKLSGIRGEVTEIGWGN--- 295 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + DHR + ++ V+ G ID IN L Sbjct: 296 QIRSYVMQPYTMVKDHRTSEETGNVDSVMDGNIDLFINAYLKW 338 >gi|293400349|ref|ZP_06644495.1| peptide chain release factor 2 [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306749|gb|EFE47992.1| peptide chain release factor 2 [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 346 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 171/348 (49%), Gaps = 12/348 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQ 60 +SH + + + E+ + E + K + AI ++ + Sbjct: 1 MSHFDLTARRYKIQELTAKTLEESFWNDPQKAQVVIRQLNAIKDVVDSYDALQKALNSLD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + + + +E+ + + +L D S ILE+ G Sbjct: 61 ETQELLKE-----DFDEEIFELFELEYQEMEKNFADFEIKVLLSHEYDHSSAILELHPGA 115 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ + L+RMY R+A ++KV VL D+ G K I + G + +K E Sbjct: 116 GGTESCDWADMLYRMYSRWAEKHEFKVSVLDYQPGDEAGIKSITFLVEGDMAYGYLKAEK 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ +A GR HTS A++ V+P+ + +++I ED+ ++T RASG+GGQH+N Sbjct: 176 GVHRLVRISPFDAGGRRHTSFASLDVMPQFNDEIEIEIKPEDLIVETKRASGAGGQHINK 235 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+ H PTG++ + +SQH+NR A++VL++RLY + + + K ++ Sbjct: 236 TDSAVRMVHKPTGLVATCQNGRSQHENREEALRVLKSRLYQKMIEEQEAKLAEI-KGEVK 294 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + +IR+Y F + DHR N ++ V+ G +D I L Sbjct: 295 ANEWGSQIRSYVFHPYSMVKDHRTNHETSDVQGVMDGDLDGFIFAYLK 342 >gi|270290715|ref|ZP_06196939.1| peptide chain release factor 2 [Pediococcus acidilactici 7_4] gi|270280775|gb|EFA26609.1| peptide chain release factor 2 [Pediococcus acidilactici 7_4] Length = 343 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 107/337 (31%), Positives = 178/337 (52%), Gaps = 10/337 (2%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + K + + + +K + ++L + +++ Sbjct: 9 EAKMAEPDFWNDQEKAQKIINETNVLKAKYDNFKNLTDHVENLEVTLELLEMEADP--DV 66 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q E + +L + LL D + ILEI G GG+E+ + L RMY R+ Sbjct: 67 QAEFEDELSQTAKLLRDYRLGLLLNGKYDANNAILEIHPGAGGTESQDWGSMLLRMYTRW 126 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A ++KV++ + G + + G + ++ E GVHR+ R+ +++GR HT Sbjct: 127 AEQHQFKVQIEDYQAGEVAGISSVTIRVMGHNAYGYLRSEKGVHRLVRLSPFDSAGRRHT 186 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE ++V+I +D+R+D R+SG+GGQH+N T SAVRITH+PTGI+V + Sbjct: 187 SFASVDVMPELDDSVEVNINPDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVVASQ 246 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ QNR+ AM +L+A+L+++E ++ A E++ Q IG G +IR+Y F Sbjct: 247 AERSQLQNRVTAMNMLKAKLFELEEQKKAEEKAKLEGTQLEIGWG---SQIRSYVFHPYS 303 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR NL ++ V+ G +DD IN L K Sbjct: 304 MVKDHRTNLETANVQGVMDGDLDDFINAYLQWKLQKR 340 >gi|225851497|ref|YP_002731731.1| peptide chain release factor 2 [Persephonella marina EX-H1] gi|225646418|gb|ACO04604.1| peptide chain release factor 2 [Persephonella marina EX-H1] Length = 370 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 123/374 (32%), Positives = 192/374 (51%), Gaps = 30/374 (8%) Query: 1 MVFLSHKQICDLKNRFA----------------EIELRMSESPSVDAYIKLTEEYAAISP 44 M+ +++ L+N+F +++ M + K E + + Sbjct: 1 MIMEFKEKLEQLENKFNNIKEILDPESLRGELFKLDQEMGRPDFWNDTKKAQEISSKRNA 60 Query: 45 IISKISIYDQKKQEEQDLHTVIG--DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 I +KI + +++ D+ I + D E D + E+ A++KEI +LE L Sbjct: 61 IANKIQEIESVEKKINDIKEFIELLELEYDKETEDEIKREIEALDKEITKLET----ASL 116 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 + D K+ I+ ++AG+GG EA + L RMY R+A + VE++ +D G K Sbjct: 117 LSEEYDMKNAIVTLQAGSGGVEACDWTEMLLRMYLRWAEKNGFDVEMVDYQPDDVAGIKS 176 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLED 221 + G + +K E GVHR+ R+ +A+ R HTS + V+V+PE E+ V+I ED Sbjct: 177 ATFIVKGPYAYGYLKGEQGVHRLVRISPFDANKRRHTSFSAVSVIPEIGDEVKVEIKEED 236 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RIDT RASG+GGQHVNTTDSAVRI HIPTGI V SE+SQ QNR +A+++L+A+LY Sbjct: 237 LRIDTFRASGAGGQHVNTTDSAVRIVHIPTGITVSCQSERSQIQNRAKALQMLKAKLYQY 296 Query: 281 ERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYID 337 E ++ ++ K I G +IR+Y F + + D R ++ V+ G ID Sbjct: 297 ELEKQKEKQKELEGEKKDISWG---SQIRSYVFQPYQMVKDLRTGYETGNIQAVMDGDID 353 Query: 338 DIINPLLTAHQAKM 351 I L A+ Sbjct: 354 PFIESYLKWRAAEK 367 >gi|121595079|ref|YP_986975.1| peptide chain release factor 2 [Acidovorax sp. JS42] gi|222111422|ref|YP_002553686.1| hypothetical protein Dtpsy_2248 [Acidovorax ebreus TPSY] gi|229576664|sp|A1W9H4|RF2_ACISJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790913|sp|B9MBK7|RF2_DIAST RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|120607159|gb|ABM42899.1| bacterial peptide chain release factor 2 (bRF-2) [Acidovorax sp. JS42] gi|221730866|gb|ACM33686.1| conserved hypothetical protein [Acidovorax ebreus TPSY] Length = 367 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 171/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L +E ++ ++ + + + +L+ + Sbjct: 30 DAKFERLRTVNASLEDPAVWNDPKKAQELGKEKKSLDAVVLTLQKLTTELADNAELYEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A +++R L E+ + + + D +C ++I+AG GG+EA Sbjct: 90 KEEGD-----EAGLTTIEAEAEKLRPLIEELEFRRMFSNEADPLNCFVDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R Y +YA + +K V + D G K I G + ++ E+GVHR+ Sbjct: 145 DWASMLLRQYLKYAERKGFKATVEEETPGDVAGIKSATIKIEGEYAYGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE + +++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASLFVYPEIDDSIEININPSDVRTDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A + LR+RLYD E ++ E+ + K +G G Sbjct: 265 LTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYDFEMRKRMEEQQKLEDTKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 365 >gi|125972886|ref|YP_001036796.1| peptide chain release factor 2 [Clostridium thermocellum ATCC 27405] gi|125713111|gb|ABN51603.1| bacterial peptide chain release factor 2 (bRF-2) [Clostridium thermocellum ATCC 27405] Length = 357 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 119/350 (34%), Positives = 187/350 (53%), Gaps = 10/350 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + + I + N+ E+E + SE + + I + SK+ Y++ + + Sbjct: 1 MKWGNLFDIASIGNQIEELEQKASEPDFWNDTENSQKILQKIKSLRSKVERYNKLVSQWE 60 Query: 61 DLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 DL T+ D + A A +KE L L D + +L + A Sbjct: 61 DLITLCELGIEEQDESVIPEAVEGFKAFKKEFEAL----RLETLLTGQYDKNNALLTLHA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+EA +V LFRMY R+A + + V+VL D ++ G K + + G + +K Sbjct: 117 GAGGTEAQDWVQMLFRMYTRWAEKKGFTVKVLDYLDGEEAGIKSVTFQVIGENAYGFLKS 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHV 237 E GVHR+ R+ +ASGR HTS A++ V+PE +I+V I +D+RIDT R+SG+GGQH+ Sbjct: 177 EKGVHRLVRISPFDASGRRHTSFASLDVMPELNDDIEVHINPDDLRIDTYRSSGAGGQHI 236 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVRITHIPTGI+V SE+SQ QN+ AMK+L+A+L +++ + + + +Q Sbjct: 237 NKTESAVRITHIPTGIVVSCQSERSQFQNKDTAMKMLKAKLMELKERENKEKIEDLKGIQ 296 Query: 297 IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F + DHR N ++ V+ G +D IN L+ Sbjct: 297 LE-IAWGSQIRSYVFCPYTLVKDHRTNYEEINVDAVMDGELDGFINSYLS 345 >gi|260220347|emb|CBA27793.1| Peptide chain release factor 1 [Curvibacter putative symbiont of Hydra magnipapillata] Length = 329 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 144/277 (51%), Positives = 191/277 (68%), Gaps = 10/277 (3%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + +LE E+ +LLPKD DD + +EIRAGTGG E+ALF DL RMY RY + + E+ Sbjct: 49 MAQLEAELQRMLLPKDPDDARPAFVEIRAGTGGDESALFAVDLARMYTRYCDAKGLRTEI 108 Query: 150 LSSSDNDDGGYKEIVATISGRG--------VFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +S+S+++ GGYKE+V I G + +KFESG HRVQRVPATE GR+HTSA Sbjct: 109 MSASESELGGYKEVVLRIEGSTTTSAGSCGAYGMLKFESGGHRVQRVPATETQGRIHTSA 168 Query: 202 ATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 T+AVL E E + I D+RIDT RASG+GGQH+N TDSAVRITHIPTGI+ Sbjct: 169 CTIAVLAEQDEAEAIKINPSDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDG 228 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQH N+ +A+KVL AR+++ +R A + +A RK +GSGDRS+RIRTYN+ QGR+TDH Sbjct: 229 RSQHSNKAQALKVLTARIHEKDRSERAAKDAAERKSLVGSGDRSDRIRTYNYPQGRLTDH 288 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RINLTLYKL+ ++G +DD+I L A+ + + Sbjct: 289 RINLTLYKLDRAMEGDLDDVIEALQAYEAAQQLAALE 325 >gi|256006007|ref|ZP_05430946.1| peptide chain release factor 2 [Clostridium thermocellum DSM 2360] gi|281417086|ref|ZP_06248106.1| peptide chain release factor 2 [Clostridium thermocellum JW20] gi|255990030|gb|EEU00173.1| peptide chain release factor 2 [Clostridium thermocellum DSM 2360] gi|281408488|gb|EFB38746.1| peptide chain release factor 2 [Clostridium thermocellum JW20] Length = 357 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 120/350 (34%), Positives = 187/350 (53%), Gaps = 10/350 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + + I + N+ E+E + SE + + I + SK+ Y++ + + Sbjct: 1 MKWGNLFDIASIGNQIEELEQKASEPDFWNDTENSQKILQKIKSLRSKVERYNKLVSQWE 60 Query: 61 DLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 DL T+ D + A A +KE L L D + IL + A Sbjct: 61 DLITLCELGIEEQDESVIPEAVEGFKAFKKEFEAL----RLETLLTGQYDKNNAILTLHA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+EA +V LFRMY R+A + + V+VL D ++ G K + + G + +K Sbjct: 117 GAGGTEAQDWVQMLFRMYTRWAEKKGFTVKVLDYLDGEEAGIKSVTFQVIGENAYGFLKS 176 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHV 237 E GVHR+ R+ +ASGR HTS A++ V+PE +I+V I +D+RIDT R+SG+GGQH+ Sbjct: 177 EKGVHRLVRISPFDASGRRHTSFASLDVMPELNDDIEVHINPDDLRIDTYRSSGAGGQHI 236 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVRITHIPTGI+V SE+SQ QN+ AMK+L+A+L +++ + + + +Q Sbjct: 237 NKTESAVRITHIPTGIVVSCQSERSQFQNKDTAMKMLKAKLMELKERENKEKIEDLKGIQ 296 Query: 297 IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F + DHR N ++ V+ G +D IN L+ Sbjct: 297 LE-IAWGSQIRSYVFCPYTLVKDHRTNYEEINVDAVMDGELDGFINSYLS 345 >gi|218906362|ref|YP_002454196.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus AH820] gi|218540032|gb|ACK92430.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus AH820] Length = 380 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 175/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ K D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|42784339|ref|NP_981586.1| peptide chain release factor 2 [Bacillus cereus ATCC 10987] gi|42740270|gb|AAS44194.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus ATCC 10987] Length = 380 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 113/348 (32%), Positives = 175/348 (50%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHT 64 + + + AE+E +M + D + ++ K D+ + + H Sbjct: 40 DLPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHE 99 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L I++ LL D D + ILE+ G GG+E Sbjct: 100 LLKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTE 154 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR Sbjct: 155 SQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 214 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSA Sbjct: 215 LVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSA 274 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 275 VRITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG 334 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 ---SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|39997376|ref|NP_953327.1| peptide chain release factor 2 [Geobacter sulfurreducens PCA] gi|39984267|gb|AAR35654.1| peptide chain release factor 2, programmed frameshift [Geobacter sulfurreducens PCA] gi|307634992|gb|ADI85036.2| peptide chain release factor 2 [Geobacter sulfurreducens KN400] Length = 372 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 106/343 (30%), Positives = 169/343 (49%), Gaps = 10/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + E+E +++ D + + + I I ++D+ ++ D+ +I Sbjct: 24 DIDSKREDIQELEAQIAAPGFWDNNEEAQKVLRERTRIEKLIDLWDRLNRQADDIRVLIE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + EV A+ + + + D SC + I AG GG+EA Sbjct: 84 LGEEAQD--EATLDEVRALNDSLEREVEGAEFQRMLSGPHDKNSCFVSINAGAGGTEAQD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RY + WK E+ D+ G K T+ G + +K E+G+HR+ R Sbjct: 142 WAEMLLRMYLRYCERKGWKTEITDFQAGDEAGVKSATFTVDGEYAYGYLKAEAGIHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V PE + I D+R+DT R+SG+GGQHVNTTDSAVR+ Sbjct: 202 ISPFDSNARRHTSFASVFVFPEIEDDIEIKIAESDLRVDTYRSSGAGGQHVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 TH+PTGI+V E+SQH N+ A+++LRA+LY+ E + + S K IG G Sbjct: 262 THLPTGIVVACQCERSQHLNKATALRMLRAKLYEKELQEREVQASELAGEKKDIGWG--- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G ++D + L Sbjct: 319 SQIRSYVLHPYKMVKDLRTGVESGNPDAVLDGALEDFVVAFLM 361 >gi|90409172|ref|ZP_01217287.1| putative peptide chain release factor 2 [Psychromonas sp. CNPT3] gi|90309717|gb|EAS37887.1| putative peptide chain release factor 2 [Psychromonas sp. CNPT3] Length = 349 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 168/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + L +E +A+ I+ I + E L + Sbjct: 12 DVKVERLEEVTRELESPEVWNDPERAQALGKERSALELIVETIKALEIGCDEILMLVELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + A E+ + + + + +D SC L+I++G+GG+EA Sbjct: 72 VDEQDQDTFDEAANE-----TLELEKKLEVLEFRRMFSGKNDSCSCYLDIQSGSGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ +K E++ S D G K SG + ++ E+GVHR+ Sbjct: 127 DWANMLLRMYLRWGEANGYKTELMEVSAGDVAGIKGATIRFSGEYAYGWLRTETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG+ HTS A+ V PE + + ++RID RASG+GGQHVNTT+SAVR Sbjct: 187 RKSPFDSSGKRHTSFASAFVYPEVEDNIDIVINPAELRIDVYRASGAGGQHVNTTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE--RKRMANERSANRKLQIGSGDR 302 ITH+PT I+V +++SQH+N+ +AMK L+A+LY+ E + + + S + K IG G Sbjct: 247 ITHLPTNIVVQCQNDRSQHKNKDQAMKQLKAKLYEHEVQIQNVEKQISEDNKSDIGWG-- 304 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +++ I L Sbjct: 305 -SQIRSYVLDDARIKDLRTGVESRNPQRVLDGELNEFIEASLK 346 >gi|257416283|ref|ZP_05593277.1| peptide chain release factor 2 [Enterococcus faecalis AR01/DG] gi|257158111|gb|EEU88071.1| peptide chain release factor 2 [Enterococcus faecalis ARO1/DG] Length = 327 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 175/330 (53%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I L+D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINLDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|283777745|ref|ZP_06344221.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus NVH0597-99] gi|283645392|gb|EFC27417.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus NVH0597-99] Length = 380 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 114/347 (32%), Positives = 175/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ K D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + +++I ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|116617317|ref|YP_817688.1| peptide chain release factor 2 [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|122272482|sp|Q03ZQ7|RF2_LEUMM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|116096164|gb|ABJ61315.1| bacterial peptide chain release factor 2 (bRF-2) [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 372 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 179/343 (52%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E RM+E + K + + + ++ + + ++L +I Sbjct: 25 DMEALTEEIADYENRMTEPDFWNDNEKAQKVIEENNVLKNRRDSFLNLTNQVEELELLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E D + K ++++ LL + D + ILEI G+GG+E+ Sbjct: 85 MAVEDPEDEDTLGELEAGVAKAQKDIDAYNLEQLLTEPYDA-NNAILEIHPGSGGTESTD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A ++VE L D+ G ++G + ++ E GVHR R Sbjct: 144 WGANLYRMYTRWAQQHDFQVETLDYHAGDEAGIDSATIKVTGHNAYGFLRSEKGVHRFVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE I+V++ +D+++D R+ G+GGQ+VN + VR+ Sbjct: 204 ISPFDSAGRRHTSFVSVDVMPELDDSIEVEVRDDDVKMDVFRSGGAGGQNVNKVSTGVRL 263 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V+S+ E++Q+ NR AM++L+++LY +E ++ ER+A ++ +G + Sbjct: 264 THEPTGIVVSSTVERTQYGNRDYAMRLLKSKLYQLELEKKEAERAALTGEKMENG-WGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + DHR N + + VL G +D IN L Sbjct: 323 IRSYVLHPYQMVKDHRTNYETNQPQAVLDGDLDPFINAYLQWQ 365 >gi|326794289|ref|YP_004312109.1| peptide chain release factor 2 [Marinomonas mediterranea MMB-1] gi|326545053|gb|ADZ90273.1| Peptide chain release factor 2 [Marinomonas mediterranea MMB-1] Length = 364 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 181/344 (52%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + KL +E + + ++ + + ++ +DL + Sbjct: 27 DAKKERLEEVSRELEDPEIWNDPEYAQKLGKERSTLEAVVETLDNLESGVEDSKDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D++ + ++E+ +++++ +LE + + D S L+I++G+GG+EA Sbjct: 87 VEE-DDADSVEAVELELNDLDEQLAKLE----FRRMFSGEMDANSAFLDIQSGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + +KVE++ S+ + G K G F ++ E+GVHR+ Sbjct: 142 DWANMLLRMYLRWGEDKGFKVELMEVSEGEVAGIKSATVRFEGEYAFGWLRTETGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V + PE + ++DI D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 202 RKSPFDSGNRRHTSFASVFLSPEIDDNVEIDINPADLRIDTYRSSGAGGQHVNTTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH+PT +V +++SQH N+ AMK LRA+LY++E + A + + K IG G Sbjct: 262 ITHVPTNTVVQCQNQRSQHANKDFAMKQLRAKLYELEMLKRTEAAQALEDTKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L Sbjct: 320 -SQIRSYVLDSSRIKDLRTGVESTNTGSVLDGSLDQFIVASLKQ 362 >gi|227817946|ref|YP_002817955.1| peptide chain release factor 2, programmed frameshift [Bacillus anthracis str. CDC 684] gi|229604792|ref|YP_002869406.1| peptide chain release factor 2, programmed [Bacillus anthracis str. A0248] gi|227003828|gb|ACP13571.1| peptide chain release factor 2, programmed frameshift [Bacillus anthracis str. CDC 684] gi|229269200|gb|ACQ50837.1| peptide chain release factor 2, programmed [Bacillus anthracis str. A0248] Length = 380 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ K D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNKAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|254555779|ref|YP_003062196.1| peptide chain release factor 2 [Lactobacillus plantarum JDM1] gi|300767562|ref|ZP_07077472.1| peptide chain release factor RF2 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179754|ref|YP_003923882.1| peptide chain release factor 2 [Lactobacillus plantarum subsp. plantarum ST-III] gi|254044706|gb|ACT61499.1| peptide chain release factor 2 [Lactobacillus plantarum JDM1] gi|300494547|gb|EFK29705.1| peptide chain release factor RF2 [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308045245|gb|ADN97788.1| peptide chain release factor 2 [Lactobacillus plantarum subsp. plantarum ST-III] Length = 357 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 178/354 (50%), Gaps = 16/354 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL--- 62 + L E E RM+E D + + + K + Q E DL Sbjct: 9 RFDLDALNESIQENEARMAEPGFWDDQAAAQKVIDENNVLKGKYDTFKQLADEVGDLAVA 68 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ + + + LL D + ILEI G GG Sbjct: 69 YELLSEEPDAEMQAEFETDFQH-----AEHDLQQYRLNLLLDGPYDRNNAILEIHPGAGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY R+AA +KVE + D+ G K + ISG + ++ E GV Sbjct: 124 TESQDWGAMLLRMYTRWAASHNFKVETVDYQAGDEAGIKSVTLLISGHNAYGYLRSEKGV 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A+V V+PE +DVDI ED++ID RASG+GGQHVN T Sbjct: 184 HRLVRISPFDAAGRRHTSFASVDVMPELDDTVDVDIRPEDLKIDVYRASGAGGQHVNKTS 243 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRITH+PTGI+V + +++SQ QNR A+ +LRA+LY+ E ++ A ER+A + Q IG Sbjct: 244 SAVRITHVPTGIVVASQAQRSQLQNRQTALNMLRAKLYEREEEKKAKERAAIQGEQMDIG 303 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 G +IR+Y F + DHR N + + V+ G +D ++ L A+ Sbjct: 304 WG---SQIRSYVFHPYTMVKDHRTNYESHDGQAVMDGDLDPFMDAYLQWKLAQR 354 >gi|227824555|ref|ZP_03989387.1| peptide chain release factor [Acidaminococcus sp. D21] gi|226905054|gb|EEH90972.1| peptide chain release factor [Acidaminococcus sp. D21] Length = 382 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 172/344 (50%), Gaps = 12/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHT 64 +I K R +++ +M+ D K + E + + + + K + L Sbjct: 41 KIEPKKERIQDLDYQMAAPGFWDDPDKAQKVAQEANNLKSEVDTFTSLETKVDDLDTLWE 100 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D+ + ++ A + +L D D + I+ + AG GG+E Sbjct: 101 MAMEEKDDTLVSEMESELEGAKHTLSE-----LELGMLLSDEYDANNAIMNLHAGAGGTE 155 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + G L RM+ RYA + ++VE+L ++ G K I G + +K E GVHR Sbjct: 156 AQDWTGMLLRMFTRYAEGKGFEVELLDVLPGEEAGTKSATLAIKGHNAYGFLKSEKGVHR 215 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS A V V+PE +V+I ++D+R+D RASG+GGQHVN T SA Sbjct: 216 LVRISPFDSNARRHTSFAAVDVMPEIDNTVEVNINMDDVRVDYYRASGAGGQHVNKTSSA 275 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V +E+SQ QN+ R +++LRA+L++ E+ + S + + Sbjct: 276 VRMTHLPTGIVVQCQNERSQLQNKERCLQLLRAKLFEYEKAIQDQKISDLA-GDYQAIEW 334 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR ++ V+ G +D + L Sbjct: 335 GSQIRSYVFQPYTLVKDHRTGAETGNIQAVMDGDLDLFVESYLR 378 >gi|329850508|ref|ZP_08265353.1| peptide chain release factor 2 [Asticcacaulis biprosthecum C19] gi|328840823|gb|EGF90394.1| peptide chain release factor 2 [Asticcacaulis biprosthecum C19] Length = 358 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 166/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D K+ E + +S I + +++ ++ + + Sbjct: 15 RRLDELNARVEDPTLWDKPDEAQKINRERSKLSASIEAVRTLEKELKDAVEFAELGDMEG 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +S I + A+ K ++ L D +EI +G GG+E+ + G Sbjct: 75 DESLIEESR-----AMLKGLKAHAGRAELEALLSGEADGNDAYVEINSGAGGTESCDWAG 129 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A VEV + + G K I G + +K E+GVHR+ R+ Sbjct: 130 ILMRMYTRWATAHGMTVEVEEETSGEQAGIKSTTLMIKGENAYGWLKTEAGVHRLVRISP 189 Query: 191 TEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS A+V V P + +DI D+R DT RASG+GGQH+N TDSAVR+THI Sbjct: 190 FDSSARRHTSFASVWVYPVVDDTIVIDINPADVRTDTYRASGAGGQHINKTDSAVRLTHI 249 Query: 250 PTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI + + +SQH NR A K+LRARLY+ E ++ + ++K IG G +I Sbjct: 250 PTGIAVACQAGRSQHANRDEAWKMLRARLYEQELQKREAAQQALEDQKTDIGWG---HQI 306 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R N+ + VL G +D + L Sbjct: 307 RSYVLQPYQMVKDLRTNVETSDSQGVLDGDLDAFMGASLAQR 348 >gi|291087933|ref|ZP_06347924.2| peptide chain release factor 2 [Clostridium sp. M62/1] gi|291073455|gb|EFE10819.1| peptide chain release factor 2 [Clostridium sp. M62/1] Length = 343 Score = 227 bits (578), Expect = 2e-57, Method: Composition-based stats. Identities = 104/339 (30%), Positives = 176/339 (51%), Gaps = 12/339 (3%) Query: 14 NRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E++ M E D +L E + + +Q+ ++ Q + + + N Sbjct: 2 KRIDELDKSMEEPGFWDDPEMSTRLMREAKNLKDTVESYRKLEQEYEDIQVMLEMGYEEN 61 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 S I + ++ + +LE LL + D+ + IL++ AG GG+EA + Sbjct: 62 DPSLIPE----IQGMMDDFVEKLEAIRIQTLLSGEYDN-NNAILKLNAGAGGTEACDWCS 116 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY+R+A + + V+ D ++ G K I I+G + +K E GVHR+ R+ Sbjct: 117 MLYRMYQRWADKKGFTTAVIDYLDGEEAGIKSITLQINGENAYGFLKSERGVHRLVRISP 176 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++G+ TS + V+P+ E DV+I +++RIDT R+SG+GGQH+N T SA+RITH+ Sbjct: 177 FNSAGKRQTSFVSCDVMPDIKEDLDVEINPDELRIDTYRSSGAGGQHINKTSSAIRITHL 236 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTGI+V +E+SQ QN+ AM++L+ +LY ++++ A + S R + + +IR+ Sbjct: 237 PTGIVVQCQNERSQFQNKEVAMQMLKTKLYMLKQEEHAEKLSDIR-GDVKDINFGNQIRS 295 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y + DHR + VL G ID I+ L Sbjct: 296 YVMQPYTLVKDHRTGAESGNVNAVLDGDIDLFISAYLKW 334 >gi|315652552|ref|ZP_07905533.1| peptide chain release factor RF2 [Eubacterium saburreum DSM 3986] gi|315485181|gb|EFU75582.1| peptide chain release factor RF2 [Eubacterium saburreum DSM 3986] Length = 351 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 175/345 (50%), Gaps = 12/345 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + + E++ M E D K+ E + + K + + ++ L + Sbjct: 1 MDSKEKKIIELDRAMEEPSFWDDPKESTKIVREAKQLKDTVEKYNKLKSEYEDIGVLIEM 60 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + N +S I ++ + ++ + L D + I+++ AG GG+E+ Sbjct: 61 GYEENDESLIPEIEAMLEEFTKEIDA-----LKIATLLTGEYDSSNAIMKLNAGAGGTES 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+AA + V+VL + D+ G K + I+G + ++ E GVHR+ Sbjct: 116 CDWCSMLYRMYTRWAAKEGYTVDVLDILEGDEAGIKSVTLQINGLNAYGYLRSEHGVHRL 175 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS + ++P+ E DVDI +D+RIDT R+SG+GGQH+N T SA+ Sbjct: 176 VRISPFNAAGKRQTSFVSCDIMPDIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAI 235 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTG++V +E+SQ QN+ +AM++L+A+L+ ++++ + S R + Sbjct: 236 RITHIPTGVVVQCQNERSQFQNKDKAMQMLKAKLFLLKQQANVEKLSDIR-GDVKDIGWG 294 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + DHR + V+ G ID I LT Sbjct: 295 NQIRSYVMQPYTMVKDHRTGAESGNVTAVMDGDIDKFIIAYLTWQ 339 >gi|320540119|ref|ZP_08039774.1| peptide chain release factor RF-2 [Serratia symbiotica str. Tucson] gi|320029785|gb|EFW11809.1| peptide chain release factor RF-2 [Serratia symbiotica str. Tucson] Length = 325 Score = 227 bits (578), Expect = 3e-57, Method: Composition-based stats. Identities = 111/331 (33%), Positives = 170/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + L +E AA+ I++ I Q ++ L + + + + Sbjct: 1 MEQPDVWNEPERAQALGKERAALEAIVATIDQLAQGGEDVNGLLELAVEAEDEETFNEAV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + K + + + D C L+I+AG+GG+EA + L RMY R+ Sbjct: 61 IELDQLMVKL-----ERLEFCRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K EV+ SD D K I G F ++ E+GVHR+ R ++ GR HT Sbjct: 116 AEAKGFKTEVIEESDGDVARLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S ++V + PE +ID++I D+RID RASG+GGQHVN T+SAVRITH+PT I+V Sbjct: 176 SFSSVFIYPEVDDDIDMEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+N+ +A K LRA+LYD E ++ ++ + K IG G +IR+Y R Sbjct: 236 NDRSQHKNKDQAFKQLRAKLYDFEMQKKNADKQTMEDNKSDIGWG---SQIRSYVLDDSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R N+ + VL G +D I L A Sbjct: 293 IKDLRTNVETRNTQAVLDGDLDKFIEASLKA 323 >gi|157149715|ref|YP_001450721.1| peptide chain release factor 2 [Streptococcus gordonii str. Challis substr. CH1] gi|189040006|sp|A8AY61|RF2_STRGC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157074509|gb|ABV09192.1| peptide chain release factor 2 [Streptococcus gordonii str. Challis substr. CH1] Length = 364 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 107/345 (31%), Positives = 187/345 (54%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E D I + ++ + + Q + ++ Sbjct: 25 DLEGLEEEIAILENKMTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTDLFDESEILLD 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D +++ + ++ +EK + E LL + D+ + ILEI G+GG+EA Sbjct: 85 FLAEDDSVQEELEEKLAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KVEVL D+ G K + + G + +K E GVHR+ R Sbjct: 141 WGDMLLRMYTRFGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G Sbjct: 261 THIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEISWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F+ + DHR + + +++ V+ G +D I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 362 >gi|293610588|ref|ZP_06692888.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292826932|gb|EFF85297.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 337 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 170/342 (49%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + + + +E + +I+ + + ++ + + + + Sbjct: 2 KKERLEEVLRELEDPAIWNDQSRAQAMAKEKGELENVINVLDGLSTQLEDAKAMLDLAVE 61 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +S + D+ + + ++ + + + D C +EI++G+GG+EA + Sbjct: 62 ADDESLLEDVQ-----SELGAAEDELAKLEFRRMFSNPMDPNPCYVEIQSGSGGTEAQDW 116 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +K E++ SD D G K + G + ++ ESGVHR+ R Sbjct: 117 ASMLLRMYMRWIERHGFKAELMEVSDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRK 176 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS + V + PE I++DI D+R DT RASG+GGQH+N TDSAVR+T Sbjct: 177 SPFDSGNRRHTSFSAVFISPEVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAVRLT 236 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSE 304 HIPTGI+V +++SQH NR A K LRARLY++E ++ + K IG G Sbjct: 237 HIPTGIVVACQNQRSQHANRDHAWKQLRARLYELEMQKRNEAAQALEDSKSDIGWG---S 293 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L Sbjct: 294 QIRSYVLDDSRIKDLRTGVENSNTGAVLDGDLDRFIEASLKQ 335 >gi|258517064|ref|YP_003193286.1| peptide chain release factor 2 [Desulfotomaculum acetoxidans DSM 771] gi|257780769|gb|ACV64663.1| bacterial peptide chain release factor 2 (bRF- 2) [Desulfotomaculum acetoxidans DSM 771] Length = 366 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 112/348 (32%), Positives = 178/348 (51%), Gaps = 16/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I ++ +++ M D K++ + A + +S Q ++ + L Sbjct: 24 DIAGKESEIEKLDKLMMAPGFWDDQAQAQKISRQQAVLKDSVSLYGELRQSLEDLEVLAE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + D +R+ A+ + + +L D + I+ + AG GG+E Sbjct: 84 LAQEEDDDIALRETAKDLKQLELRVSE-----LELDVLLSGEYDRGNAIISLHAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +V L RM+ R+A +++V VL D+ G K + I G F +K E GVHR Sbjct: 139 AQDWVEMLLRMFTRWAEDHRYRVIVLDMLSGDEAGIKSVTVEIVGPNAFGYLKSEKGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + +GR HTS A+V VLPE E D++I ED++IDT RA G+GGQHVN TDSA Sbjct: 199 LVRISPFDTAGRRHTSFASVEVLPEVDEDVDIEIKTEDLKIDTFRAGGAGGQHVNKTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSG 300 VRITH+PTGI+V +E+SQ NR AMK+L+A+L ++E ++ E ++ R +I G Sbjct: 259 VRITHLPTGIVVSCQNERSQLSNRNSAMKLLKAKLAELELQKKEAEMASLRGDHQEIAWG 318 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR +E V+ G +D + L Sbjct: 319 ---SQIRSYVFHPYSLVKDHRTGAETGNIEAVMNGELDKFMAAFLLWQ 363 >gi|119384552|ref|YP_915608.1| peptide chain release factor 2 [Paracoccus denitrificans PD1222] gi|119374319|gb|ABL69912.1| bacterial peptide chain release factor 2 (bRF-2) [Paracoccus denitrificans PD1222] Length = 402 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 115/348 (33%), Positives = 172/348 (49%), Gaps = 11/348 (3%) Query: 15 RFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + KL + +S + + + ++ +L + Sbjct: 58 RLEELNAMIEAGDIWSDQARAQKLMRDRQMLSDAVETYRRIESELKDNAELIELGEAEGD 117 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D + D K + EL + L D LEI AG GG+E+A + Sbjct: 118 DEIVADAEAA-----LKSLAELAAQKELEALLNGEADGNDTFLEINAGAGGTESADWASM 172 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + VE+LS + ++ G + ISG + +K ESGVHR+ R+ Sbjct: 173 LARMYVRWAEKKGYSVELLSETPGEEAGIRSAAYKISGPNAYGWLKSESGVHRLVRISPY 232 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++V V P I++ IP +IRIDT R+SG+GGQHVNTTDSAVRITH+P Sbjct: 233 DSAARRHTSFSSVWVYPVVDDNIEITIPDNEIRIDTYRSSGAGGQHVNTTDSAVRITHLP 292 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 TGI+VTSSEKSQHQNR AM L+ARLY +E + +A + + G +IR+Y Sbjct: 293 TGIVVTSSEKSQHQNRANAMAALKARLYQLELDKRNAAINAQHEAK-GDAGWGNQIRSYV 351 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R + VL G +D + L A + ++ Sbjct: 352 LHPYQMVKDLRTGHETSDTQGVLDGALDAFMAATLALDVAGKSRAEAQ 399 >gi|167462917|ref|ZP_02328006.1| peptide chain release factor 2 in translation [Paenibacillus larvae subsp. larvae BRL-230010] gi|322383023|ref|ZP_08056853.1| peptide chain release factor 2-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321153046|gb|EFX45506.1| peptide chain release factor 2-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 332 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 113/330 (34%), Positives = 168/330 (50%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M+ D K + A ++ I + + E D+ + + + D + Sbjct: 1 MAAPDFWDDQEKAQKTIAELNAIKGSVEQFQALSSEFGDIEVMAQLAEEEDDESLAAEVA 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + I ++ E + LL D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 ESIKGIVGKLEGFELQ----LLLSQPYDRLNAILELHPGAGGTESQDWAEMLLRMYRRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 +KVEVL D+ G K + I G + +K E GVHR+ R+ +ASGR HTS Sbjct: 117 EKHDFKVEVLDYLPGDEAGVKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDASGRRHTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 + V+PE + DV+I ED++IDT RASG+GGQH+NTTDSAVRITHIPTGI+V + Sbjct: 177 FVSCDVVPEIDDDVDVEIRSEDLKIDTYRASGAGGQHINTTDSAVRITHIPTGIVVTCQT 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 E+SQ +NR RAMK+LR++LY+ + + + R Q +IR+Y F + Sbjct: 237 ERSQIKNRERAMKLLRSKLYEKKIEEQEKHLAEIRGEQ-SDIAWGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + V+ G +D I+ L Sbjct: 296 DHRTSAETGNAGAVMDGDLDMFIDAYLRQQ 325 >gi|217962667|ref|YP_002341241.1| peptide chain release factor 2 [Bacillus cereus AH187] Length = 380 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGSFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + +++I ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|253580007|ref|ZP_04857274.1| peptide chain release factor 2 [Ruminococcus sp. 5_1_39B_FAA] gi|251848526|gb|EES76489.1| peptide chain release factor 2 [Ruminococcus sp. 5_1_39BFAA] Length = 343 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 104/341 (30%), Positives = 181/341 (53%), Gaps = 6/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + + E+E M D ++ + + + Y + +D+ T+I Sbjct: 1 MANKEQKVEELEREMEAPDFWDDAEVSQKKMKELKDMKDDMETYQNLVTQMEDMETMIEM 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +++ + +I+ + E + + I L D ++ I+++ AG GG+EA + Sbjct: 61 GYEENDPALIPEIQEMLDEFQKDF--DNIRIKTLLSGEYDSENAIIKLNAGAGGTEACDW 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L+RMY R+A + + +EVL D D+ G K + ++G + +K E GVHR+ R+ Sbjct: 119 CGMLYRMYSRWADKKGFTLEVLDYLDGDEAGIKSVTFQVNGTNAYGYLKSEKGVHRLVRI 178 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS + V+P+ + DV+I ++IRIDT R+SG+GGQH+N T SA+RIT Sbjct: 179 SPFNAAGKRQTSFVSCDVMPDIKKDLDVEINDDEIRIDTYRSSGAGGQHINKTSSAIRIT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H PTGI+V +E+SQH N+ +AM++L+A+LY ++++ + S R ++ +I Sbjct: 239 HYPTGIVVQCQNERSQHMNKDKAMQMLKAKLYLLKQQEAEEKLSGIR-GEVTDIGWGNQI 297 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + DHR N ++ VL G ID IN L Sbjct: 298 RSYVMQPYTMVKDHRTNEETGNVDAVLDGGIDIFINAYLKW 338 >gi|220929619|ref|YP_002506528.1| hypothetical protein Ccel_2206 [Clostridium cellulolyticum H10] gi|219999947|gb|ACL76548.1| hypothetical protein Ccel_2206 [Clostridium cellulolyticum H10] Length = 373 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 183/346 (52%), Gaps = 6/346 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + I + + AE+E + SE + + + +KI ++ + +DL Sbjct: 21 MRASLDIARISDEIAELEHKASEPEFWNDMENSQKILQKTKILKTKIERFNNITSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 T+ E + EV +++ + L D + IL + AG GG Sbjct: 81 FTLAEL--GLEEQDESVIPEVGEGLVQLKNNLESLRLETLLTGPYDKNNAILTLHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V L RM+ R+ + ++V++L D D+ G K + + G + +K E GV Sbjct: 139 TEAQDWVQMLLRMFTRWGEAKGYEVKILDYLDGDEAGIKSVTIHVIGENAYGYLKSEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ ++SGR HTS A++ V+PE I+++I +D+RIDT RASG+GGQH+N TD Sbjct: 199 HRLVRISPFDSSGRRHTSFASLDVMPELDDTIEININPDDLRIDTYRASGAGGQHINKTD 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITHIPTG++V +E+SQ QN+ AMK+L+A+L++++ + + + +Q+ Sbjct: 259 SAIRITHIPTGVVVSCQTERSQFQNKDTAMKMLKAKLFELKEREQKEKIEDLKGVQM-DI 317 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N ++ V+ G +D IN L+ Sbjct: 318 AWGSQIRSYVFCPYTLVKDHRTNYEEGNVDAVMDGELDGFINAYLS 363 >gi|256833004|ref|YP_003161731.1| peptide chain release factor 1 [Jonesia denitrificans DSM 20603] gi|256686535|gb|ACV09428.1| peptide chain release factor 1 [Jonesia denitrificans DSM 20603] Length = 361 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 137/348 (39%), Positives = 198/348 (56%), Gaps = 19/348 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L +A+IE ++S++ +L YA + ++S + + + Sbjct: 8 VEPLLGEYADIEAQLSDASVHSDQARARQLGRRYAELGQVVSAYRAWRSATDDLDAARDM 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + A + L +L+P+D DD + ILEI+AG GG+E+ Sbjct: 68 AEE---DPSFAEEIPAMEHAAAEASERL----RRVLIPRDPDDSRDVILEIKAGEGGAES 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF DL RMY RYA + W+ E++ ++++D GGYK++ + GV++ +K+ Sbjct: 121 ALFAADLLRMYLRYAERQGWRTEIIGATESDLGGYKDVQVAVKARGQVTPEEGVWAHLKY 180 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSA V V PE + +I D+RID R+SG GGQ V Sbjct: 181 EGGVHRVQRVPVTESQGRIHTSAVGVLVFPEVEDEGELEIDQNDLRIDVYRSSGPGGQSV 240 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITHIPTGI+V+ +EKSQ QNR +AM+VLRARL ++ A R+ Q Sbjct: 241 NTTDSAVRITHIPTGIVVSMQNEKSQLQNREQAMRVLRARLLAARQEEAAAAAQDMRRSQ 300 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + + DRSERIRTYNF + RI DHR Y L+ VL G + ++ + Sbjct: 301 VRTVDRSERIRTYNFPENRIADHRTGFKSYNLDQVLDGDVQPVVQSAI 348 >gi|170289255|ref|YP_001739493.1| peptide chain release factor 1 [Thermotoga sp. RQ2] gi|281412857|ref|YP_003346936.1| peptide chain release factor 1 [Thermotoga naphthophila RKU-10] gi|170176758|gb|ACB09810.1| peptide chain release factor 1 [Thermotoga sp. RQ2] gi|281373960|gb|ADA67522.1| peptide chain release factor 1 [Thermotoga naphthophila RKU-10] Length = 342 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 148/335 (44%), Positives = 206/335 (61%), Gaps = 16/335 (4%) Query: 22 RMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + EYA I I + + + ++ + L Sbjct: 11 LLARPDLTPEQMKNYGIEYAKIEEIENIANRIKETQEFIELLR--------------EEG 56 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 L IEK +EL+ LLL ++ I+EIR G GG EAALF DLFRMY RYA Sbjct: 57 ENELEIEKYEKELDQLYQELLLLLSSEVGDKAIVEIRPGAGGEEAALFARDLFRMYTRYA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + W +EV + D GG +E+V + G+ + +K+ESGVHRVQR+P TE+ GR+HTS Sbjct: 117 ERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRIPVTESGGRIHTS 176 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLPE E D++I ED++I+T RASG GGQ+VN T+SAVRITHIPTGI+V +E Sbjct: 177 TATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHIPTGIVVSCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ+QNR A+++LRARLY +++++ E S RK QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 237 RSQYQNRQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RIN T Y+L+ +L G +D+II+ L+ + Sbjct: 297 RINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331 >gi|182677929|ref|YP_001832075.1| hypothetical protein Bind_0939 [Beijerinckia indica subsp. indica ATCC 9039] gi|182633812|gb|ACB94586.1| hypothetical protein Bind_0939 [Beijerinckia indica subsp. indica ATCC 9039] Length = 376 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 169/346 (48%), Gaps = 10/346 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + R E+ ++ + + + + ++ Q + + D T+ Sbjct: 22 HLDVDTSTRRLEELNAKVENPDLWNDAEAAQKIMRERTELEERLGSIKQFEGDLDDAATL 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++ + + L +I L D +E+ +G GG+E+ Sbjct: 82 IELAEAEGDEASEKEGIDLLKGLKIEA--ERRQIEALLSGEVDSNDTYIEVHSGAGGTES 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + LFRMY R+A ++KVE++ + D+ G K + G K ESGVHR+ Sbjct: 140 CDWARMLFRMYARWAERHRFKVEIIEETAGDEAGIKSATLLVKGHNAHGWAKTESGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS A+V V P +I++D+ D RIDT R+SG+GGQH+NTTDSAV Sbjct: 200 VRISPFDSNARRHTSFASVWVYPVIDDKIEIDVKESDCRIDTYRSSGAGGQHINTTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIP+GI+V E+SQH+NR A +LRARLY+ E +R E +A K +IG G Sbjct: 260 RITHIPSGIVVACQGERSQHKNRATAWNMLRARLYEKELERREAEANATEATKTEIGWG- 318 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + + D R T + VL G +D + L Sbjct: 319 --HQIRSYVLQPYQLVKDLRTGTTSGTPDEVLDGDLDTFMEAALAQ 362 >gi|330839015|ref|YP_004413595.1| Peptide chain release factor 2 [Selenomonas sputigena ATCC 35185] gi|329746779|gb|AEC00136.1| Peptide chain release factor 2 [Selenomonas sputigena ATCC 35185] Length = 368 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 171/347 (49%), Gaps = 6/347 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + AE+E +M E D + + ++ I + Y + + D Sbjct: 19 MGDSLDVARKEEKIAELEYKMGEPTFWDNAEEAQKINQELAAIKGSVDKYKEIVSKTDDA 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ +++ +++ + E E+ L D + IL + AG GG Sbjct: 79 QALLEMALEENDTSLEPEVQTEFETIKTAVRELELEVL--LSGPYDANNAILTLHAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+A + V D+ G K I+G + +K E GV Sbjct: 137 TEAQDWTQMLLRMYGRWAERHGFSVVTADLLPGDEAGVKSATLFINGHNAYGYLKSEKGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++ R HTS + ++PE + ++V I + D+R+DT RASG+GGQH+N T Sbjct: 197 HRLVRISPFDSNARRHTSFSACDIMPEIDDAVEVAINMADVRVDTYRASGAGGQHINKTS 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH+PTGI+V +E+SQ QNR + MK+LRA+L+++E+++ E Q Sbjct: 257 SAVRMTHMPTGIVVQCQNERSQLQNREQCMKMLRAKLFELEQEKKEAEIQKLEGDQQK-I 315 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R + ++ V+ G +D I L A Sbjct: 316 EWGSQIRSYVFQPYTMVKDMRTGMETGNVQAVMDGDLDAFIEAFLAA 362 >gi|220925876|ref|YP_002501178.1| hypothetical protein Mnod_6050 [Methylobacterium nodulans ORS 2060] gi|219950483|gb|ACL60875.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060] Length = 375 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 117/342 (34%), Positives = 169/342 (49%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R AE+ R + + K+ E + +S I +Q ++ L + Sbjct: 30 KRLAELNARSEDPALWNDPEAAQKVMRERTQLEEAVSAIRRLEQGLEDAATLIELGEMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ IR+ + + R L D LE+ AG GG+E+ + Sbjct: 90 DEASIREGEEQIRAVQAEAAR-----RQIETLLAGEADGNDTYLEVHAGAGGTESQDWAN 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A RK+KVE++ S+ ++ G K I G + +K ESGVHR+ R+ Sbjct: 145 MLHRMYARWAERRKYKVEIVEWSEGEEAGIKGATLLIKGHNAYGWLKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V P I +++ D RIDT R+SG+GGQHVNTTDSAVRITHI Sbjct: 205 YDSNARRHTSFASVWVYPVIDDRITIEVKESDCRIDTYRSSGAGGQHVNTTDSAVRITHI 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V E+SQH+NR A +LRARLY++E K+ + +A K IG G +I Sbjct: 265 PTGIVVACQQERSQHKNRATAWNMLRARLYELELKKREEKANAEAASKTDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R VL G ID I L Sbjct: 322 RSYVLQPYQLVKDLRTGAQSTSPGDVLDGEIDPFIEASLAQR 363 >gi|307822369|ref|ZP_07652601.1| peptide chain release factor 2 [Methylobacter tundripaludum SV96] gi|307736935|gb|EFO07780.1| peptide chain release factor 2 [Methylobacter tundripaludum SV96] Length = 347 Score = 227 bits (577), Expect = 3e-57, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 168/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + D L +E + I++ I+ ++ + ++L + Sbjct: 10 DVKSERLVEVLRELENPKIWDNPEEAQALGKERGQLEVIVNTINDLERGLSDAEELLLMA 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 E + V+ + + ++ + + D + L+I++G+GG+EA Sbjct: 70 V-----EEDDEETVETVVDDLEHFEKRVADLEFRRMFSGQMDANNAFLDIQSGSGGTEAQ 124 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ + +K E++ S D G K G F ++ E+GVHR+ Sbjct: 125 DWASIIERMYLRWGEQKGFKTELIEESQGDVAGIKSATIKFEGEYAFGWLRTETGVHRLV 184 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V V PE + DIR+D RASG+GGQH+N T+SAVR Sbjct: 185 RKSPFDSGNRRHTSFASVFVSPEIDDDIDIDINPADIRVDVYRASGAGGQHINKTESAVR 244 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 +TH PTGI+V S++SQH+NR AMK L+A+LY++E ++ + + + K IG G Sbjct: 245 MTHNPTGIVVQCQSDRSQHKNRDTAMKQLKAKLYELEMRKRSETAQALEDTKSDIGWG-- 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R N+ + VL G +D I L Sbjct: 303 -SQIRSYVLDQSRIKDLRTNVETGNTQAVLDGDLDQFIEASLK 344 >gi|308535208|ref|YP_002137819.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem] gi|308052553|gb|ACH38023.2| peptide chain release factor 2 [Geobacter bemidjiensis Bem] Length = 371 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 178/343 (51%), Gaps = 11/343 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D K R E+E S + + + + + ++ ++ ++ +D+ +I Sbjct: 25 VDDKKERMQELEELTSRPDFWNDAENAQKVLRSRTAMEKDVTTWESLDKQARDIKELIEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + EV A+ ++ ++ + + D + I +G GG+E+ + Sbjct: 85 GSEEQD--EATLAEVAAMNAQLETGVSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + WK E+ + D G K + ++G + +K E+G+HR+ R+ Sbjct: 143 AEMLLRMYLRYCEKKGWKTEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++S R HTS A+ V P E +I++ I D+RIDT R+SG+GGQHVNTTDSA+RI Sbjct: 203 SPFDSSARRHTSFASAFVFPVIEEEDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 THIPTG +V SE+SQH N+ AMKVLR++LY++E + + S K +IG G Sbjct: 263 THIPTGTVVACQSERSQHMNKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWG--- 319 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G +DD + P L Sbjct: 320 SQIRSYVLHPYKMVKDLRTGVESGNPDAVLDGSLDDFVVPYLM 362 >gi|71281667|ref|YP_270738.1| peptide chain release factor 2, programmed frameshift [Colwellia psychrerythraea 34H] gi|123631202|sp|Q47WT4|RF2_COLP3 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|71147407|gb|AAZ27880.1| peptide chain release factor 2, programmed frameshift [Colwellia psychrerythraea 34H] Length = 365 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 110/339 (32%), Positives = 183/339 (53%), Gaps = 15/339 (4%) Query: 14 NRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ + + L +E +++ +++ I + ++ + L + + Sbjct: 32 ERLVEVSRELELPDVWNEPERAQALGKERSSLEEVVNTIVELETGCEDIEGLVELAVEE- 90 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD E D A++E A++K + +LE + + D + L+I++G+GG+EA + Sbjct: 91 SDQETFDDAEVEADALDKVLEKLE----FRRMFSGEQDANNSYLDIQSGSGGTEAQDWAE 146 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ +K EV+ +D D G K +G + ++ E+GVHR+ R Sbjct: 147 MLMRMYLRWGEAHGYKTEVIEVTDGDVAGIKGCTIKYTGEYAYGWLRTETGVHRLVRKSP 206 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++SGR HTS A+ + PE + ++DI D+RIDT RASG+GGQHVN TDSA+RITH Sbjct: 207 FDSSGRRHTSFASAFIYPEIDDNIEIDINPADLRIDTFRASGAGGQHVNKTDSAIRITHE 266 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTG +V +++SQH+NR AMK+L+A+LY++E ++ +++ + K IG G +I Sbjct: 267 PTGAVVACQADRSQHKNRATAMKLLKAKLYEMEMQKQNSDKQVLEDGKSDIGWG---SQI 323 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y RI D R + + VL G +D + L Sbjct: 324 RSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFLEASLK 362 >gi|267847202|gb|ACJ79637.2| peptide chain release factor 2, programmed frameshift [Bacillus cereus AH187] Length = 380 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 174/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGSFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEDLHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + +++I ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|284048024|ref|YP_003398363.1| peptide chain release factor 2 [Acidaminococcus fermentans DSM 20731] gi|283952245|gb|ADB47048.1| peptide chain release factor 2 [Acidaminococcus fermentans DSM 20731] Length = 366 Score = 226 bits (576), Expect = 3e-57, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 12/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 +I + R ++E +M+ D K +E + + K + + L Sbjct: 25 KIAQKEERIEDLEHQMAAPGFWDDPDKAQTVAQEANNLKTEVETYHGLAAKLDDVETLWE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + DS ++ + A + + +L D D + IL + AG GG+E Sbjct: 85 MAMEEKDDSLQGEIEEEVENARKTLAD-----LELGMLLSDQYDANNAILTLHAGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY RYA + + VE+L ++ G K T+ G + +K E GVHR Sbjct: 140 AQDWTNMLLRMYTRYAEQKGFTVELLDVLPGEEAGIKSATLTVQGHNAYGYLKSEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ R HTS A V V+PE ++V++ ++D+R+D RASG+GGQHVN T SA Sbjct: 200 LVRISPFDANARRHTSFAAVDVMPELDETVEVNLNMDDVRVDYYRASGAGGQHVNKTSSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V +E+SQ QN+ R + +LRA+LY+ E+ + S + + Sbjct: 260 VRMTHIPTGIVVQCQNERSQLQNKERCLALLRAKLYEYEKAIQDKKISELA-GDYQAIEW 318 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR ++ V+ G +D + L Sbjct: 319 GSQIRSYVFQPYTMVKDHRTGAETGNIQAVMDGDLDPFVEAYLR 362 >gi|126642199|ref|YP_001085183.1| peptide chain release factor 1 [Acinetobacter baumannii ATCC 17978] Length = 296 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 153/292 (52%), Positives = 215/292 (73%), Gaps = 2/292 (0%) Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIRAGTGG EAA+ Sbjct: 1 MMKSDPDFKDMAEEEIQANKALLEELESQLNILMIPKDPNDSNAAYLEIRAGTGGDEAAI 60 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+KFESG HRVQR Sbjct: 61 FSGDLFRMYSKYAESQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLKFESGAHRVQR 120 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 VPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH+N TDSAVRI Sbjct: 121 VPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQHINKTDSAVRI 180 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ +GSGDRSER Sbjct: 181 THIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRRDLVGSGDRSER 240 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + ++ Sbjct: 241 IRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAMLAQ 292 >gi|269957243|ref|YP_003327032.1| peptide chain release factor 1 [Xylanimonas cellulosilytica DSM 15894] gi|269305924|gb|ACZ31474.1| peptide chain release factor 1 [Xylanimonas cellulosilytica DSM 15894] Length = 366 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 142/358 (39%), Positives = 206/358 (57%), Gaps = 15/358 (4%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L AEIE +++ L YA ++ ++ + + + + ++ Sbjct: 12 LLAEHAEIERALADPAVHADAGRARTLGRRYAELNQVVGAYRAWAAARDDAEAAAELLEL 71 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E + A E + + +L+P+D DD + ILEI+AG GG E+ALF Sbjct: 72 SDGLEEELAAELPGLQAAEADAA---EHLRRVLVPRDPDDGRDVILEIKAGEGGEESALF 128 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV-------FSRMKFESG 181 GDL RMY RYA + W +VL ++D D GGYK++ I R V ++ +K+E G Sbjct: 129 AGDLLRMYLRYAERKGWSTQVLEATDTDLGGYKDVQVAIKARSVNDPGDGVWAHLKYEGG 188 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TE GR+HTSAA V V PE + +V+I D+RID R+SG GGQ VNTT Sbjct: 189 VHRVQRVPVTETQGRIHTSAAGVLVFPEVDDPGEVEIDPNDLRIDVYRSSGPGGQSVNTT 248 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ +EKSQ QN+ +AM+VLRARL +++ A + + R+ Q+ + Sbjct: 249 DSAVRITHLPTGIVVSMQNEKSQLQNKEQAMRVLRARLLAAQQEEAAAQAADLRRSQVRT 308 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF + RI DHR Y L+ VL G ++ ++ + A +A + + Sbjct: 309 VDRSERIRTYNFPENRIADHRTGYKAYNLDAVLGGDLEPVVRSAIEADEAARLAGFGD 366 >gi|256825643|ref|YP_003149603.1| peptide chain release factor 1 [Kytococcus sedentarius DSM 20547] gi|256689036|gb|ACV06838.1| bacterial peptide chain release factor 1 (bRF-1) [Kytococcus sedentarius DSM 20547] Length = 357 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 136/364 (37%), Positives = 205/364 (56%), Gaps = 19/364 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + + A +E M+ V + YAA+ P+ + + +Q+ Sbjct: 1 MSEALGEALAEHARLEAEMARPEVVGDPARFRAAARGYAALEPVARAAARREAAEQDL-- 58 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + E+ A+ +E+ + + L+P+D DDD+ ILE++AG G Sbjct: 59 -----AAARELAAEEPDFAAELPALVEELEAAQEALTRALVPRDPDDDRDVILEVKAGEG 113 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV-------FS 174 G E+ALF +L RMY R+A R W VL S+ +D GG K+ I RG ++ Sbjct: 114 GQESALFAHELVRMYLRHAERRGWAATVLESTASDLGGVKDARVAIRARGAGEPGDAPWA 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSG 233 R+KFE GVHRVQRVP TE+ GR+HTSA V VLPE + +V+I D+++D R+SG G Sbjct: 174 RLKFEGGVHRVQRVPVTESQGRIHTSAVGVLVLPEVDDPGEVEIAPADLKVDVYRSSGPG 233 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVR+TH+PTG++V +EKSQ QN+ A++VL +RL + + E S Sbjct: 234 GQSVNTTDSAVRLTHLPTGVVVTCQNEKSQLQNKEAALRVLASRLRRMALEEAQAEVSQA 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 R+ Q+ + DRSER+RTYNF + R++DHR + L VL G +D +I+ L+ H+A+++ Sbjct: 294 RRAQVRTVDRSERVRTYNFPESRVSDHRTGYKAHNLPAVLDGDLDAVIDSLVADHEAQLL 353 Query: 353 GSAS 356 Sbjct: 354 AGEG 357 >gi|222100202|ref|YP_002534770.1| Peptide chain release factor 1 [Thermotoga neapolitana DSM 4359] gi|221572592|gb|ACM23404.1| Peptide chain release factor 1 [Thermotoga neapolitana DSM 4359] Length = 349 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 149/326 (45%), Positives = 204/326 (62%), Gaps = 15/326 (4%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 + EYA + I S ++ I + E+ + + I++ Sbjct: 27 EEMKNYGIEYAKLEEIESVVNR--------------IRETQEFIELLKEEEEDEQEIDRY 72 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 +EL++ L L + I+EIR GTGG EAALF DLFRMY RYA + W VE+ Sbjct: 73 EKELDSLFQELFLLLSPETGDKAIVEIRPGTGGEEAALFARDLFRMYTRYAERKGWDVEI 132 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + D GG KE V + G+ +S +K+ESGVHRVQRVP TE+ GR+HTS ATV VLPE Sbjct: 133 AEMHETDLGGVKEAVFFVKGKNAYSILKYESGVHRVQRVPITESGGRIHTSTATVVVLPE 192 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 E D++I ED++I+T RASG GGQ+VN T+SAVRITHIPTGI+V +E+SQ+QN+ Sbjct: 193 IEERDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHIPTGIVVSCQNERSQYQNKQT 252 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 A+++LRARLY ++R+++ E S RK QIG+G+RSE+IRTYNF Q R+TDHRIN T Y+L Sbjct: 253 ALRILRARLYQLQREQLEKELSQKRKSQIGTGERSEKIRTYNFPQNRVTDHRINYTSYRL 312 Query: 329 EYVLQGYIDDIINPLLTAHQAKMIGS 354 + +L G +D+II L+ I Sbjct: 313 QEILDGDLDEIIAKLIEHDIENNIEE 338 >gi|260892371|ref|YP_003238468.1| PE-PGRS family protein [Ammonifex degensii KC4] gi|260864512|gb|ACX51618.1| PE-PGRS family protein [Ammonifex degensii KC4] Length = 377 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 113/354 (31%), Positives = 172/354 (48%), Gaps = 12/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + R A +E M +T+E A++ + + + +E L Sbjct: 24 DLAQKEKRLALLEKEMEAPDFWRDLARAQAVTQEVASLRQCLGRFYRLREGHEELSVLLE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + +LAQ + + LL D + I+ + AG GG++ Sbjct: 84 LAAEEGDAQVLAELAQDVKKLAGEIED-----LEVELLLSGPYDASNAIVSLHAGAGGTD 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +V L RMY R+A +++ L ++ G K + + G + +K E GVHR Sbjct: 139 AQDWVAMLLRMYARWAEAHGYRIRTLDLLTGEEAGIKSVTFEVIGPRAYGYLKAERGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +ASGR HTS A+V VLP + I E++RIDT RASG+GGQHVN T++A Sbjct: 199 LIRISPFDASGRRHTSFASVDVLPAVKDDTEIKIAPEELRIDTFRASGAGGQHVNKTETA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI V SE+SQ N+ AM++LRARL D++ K E +A R ++ Sbjct: 259 VRITHLPTGITVTCQSERSQSANKAAAMEILRARLLDLKIKEREKELAALR-GEVKEIAW 317 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +IRTY + DHR + ++ VL G IDD I L K +A Sbjct: 318 GNQIRTYVLHPYTLVKDHRTGVERRDIQAVLDGDIDDFIRAYLKVEARKQAEAA 371 >gi|227431353|ref|ZP_03913406.1| peptide chain release factor RF2 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352946|gb|EEJ43119.1| peptide chain release factor RF2 [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 372 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 178/343 (51%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E RM+E + K + + + ++ + + ++L +I Sbjct: 25 DMEALTEEIADYENRMTEPDFWNDNEKAKKVIEENNVLKNRRDSFLNLTNQVEELELLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E D + ++++ LL + D + ILEI G+GG+E+ Sbjct: 85 MAVEDPEDEDTLGELEAGVANAQKDIDAYNLEQLLTEPYDA-NNAILEIHPGSGGTESTD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A ++VE L D+ G ++G + ++ E GVHR R Sbjct: 144 WGANLYRMYTRWAQQHDFQVETLDYHAGDEAGIDSATIKVTGHNAYGFLRSEKGVHRFVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE I+V++ +D+++D R+ G+GGQ+VN + VR+ Sbjct: 204 ISPFDSAGRRHTSFVSVDVMPELDDSIEVEVRDDDVKMDVFRSGGAGGQNVNKVSTGVRL 263 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V+S+ E++Q+ NR AM++L+++LY +E ++ ER+A ++ +G + Sbjct: 264 THEPTGIVVSSTVERTQYGNRDYAMRLLKSKLYQLELEKKEAERAALTGEKMENG-WGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + DHR N + + VL G +D IN L Sbjct: 323 IRSYVLHPYQMVKDHRTNYETNQPQAVLDGDLDPFINAYLQWQ 365 >gi|315149827|gb|EFT93843.1| peptide chain release factor 2 [Enterococcus faecalis TX0012] Length = 327 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 173/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M E D + + + K + Q +E +L + + D+EI++ + Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDAEIQEELE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + +++ + E LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERLTTYEL----SLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ESHGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTS 176 Query: 201 AATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + + Sbjct: 177 FCSVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQA 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ +IR+Y F + Sbjct: 237 QRSQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQME-ISWGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|294055147|ref|YP_003548805.1| hypothetical protein Caka_1616 [Coraliomargarita akajimensis DSM 45221] gi|293614480|gb|ADE54635.1| hypothetical protein Caka_1616 [Coraliomargarita akajimensis DSM 45221] Length = 386 Score = 226 bits (576), Expect = 4e-57, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 171/348 (49%), Gaps = 16/348 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLH 63 K++ +++ +E +M+E D + A + ++ ++ + + Q + Sbjct: 30 KKLEEIEA----LEAQMAEPTFWDDQQAAQKVIAEANRLKAAVNPCRAFNAEVDDLQAML 85 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D + Q + A+ + +L + + D + +L I AG GG+ Sbjct: 86 ELVDEMGGDPDAAAYEQEVLDAVHALLPKL-DALELASFLTGPHDSCNALLTIHAGAGGT 144 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ + L RMY R+ + V++ ++ G I G + K E GVH Sbjct: 145 ESCDWADMLLRMYTRWGERAGFTVDIQDIMPGEEAGISSATIRIEGPNAYGYAKAERGVH 204 Query: 184 RVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ +++ R HTS ++V V+ +ID+DIP +IR D RASG GGQHVN T+S Sbjct: 205 RLVRISPFDSNARRHTSFSSVDVIAEIEDDIDLDIPESEIRTDVYRASGKGGQHVNRTES 264 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGS 299 AVR+THIPT ++V +E+SQ +N+ AM+ L++RLY+ +E K I Sbjct: 265 AVRLTHIPTNLVVTCQNERSQIKNKATAMRTLKSRLYEKMLDEKRSEMEKFYGEKGDIAW 324 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G+ +IR+Y F + +TD R L ++ V+ G +D ++ L A Sbjct: 325 GN---QIRSYVFQPYQLVTDLRTGLKEGNVQGVMDGELDPFVHAWLRA 369 >gi|118090032|ref|YP_873927.1| peptide chain release factor 2 [Streptococcus pneumoniae TIGR4] gi|123517990|sp|Q2MGI2|RF2_STRPN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|85720582|gb|ABC75805.1| peptide chain release factor 2, programmed frameshift [Streptococcus pneumoniae TIGR4] Length = 364 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 187/345 (54%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E + I + ++ + + + + + ++ + ++ ++ Sbjct: 25 DLEGLEEEIAILENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLD 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + D + E+ ++ LL + D + ILEI G+GG+EA Sbjct: 85 FLAEDESVHDELVAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RY + +KVEVL D+ G K + + G + +K E GVHR+ R Sbjct: 141 WGDMLLRMYTRYGNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V S+ +++Q+ NR RAMK+L+A+LY +E+ + A E + + K +I G Sbjct: 261 THIPTGIVVQSTVDRTQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F+ + DHR + + +++ V+ G +D I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 362 >gi|257457828|ref|ZP_05622987.1| peptide chain release factor 2 [Treponema vincentii ATCC 35580] gi|257444541|gb|EEV19625.1| peptide chain release factor 2 [Treponema vincentii ATCC 35580] Length = 363 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 118/350 (33%), Positives = 177/350 (50%), Gaps = 12/350 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +K R AE E + + K + I + ++I ++ + +DL T+ + Sbjct: 12 EAVKKRIAEKEAVAGQEGFWNDPKKAEKLLTEIKKLKNRIEPWETLIADIEDLQTLYELT 71 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D++ D Q +++++ E LL + D L + AG GG+EA Sbjct: 72 QEAGDADNADSVQEIDMSLKELQERFEKLNTLALLSDEVDG-SDAFLTVHAGAGGTEACD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R + VE L + D+ G K I I G + +K E+GVHR+ R Sbjct: 131 WAQMLTRMYLRWAERRGFSVETLDELEADE-GLKSITLQIRGDYAYGFLKAETGVHRLIR 189 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS ++V V P I+V+I ED+R+DT RA G+GGQHVN TDSAVR+ Sbjct: 190 ISPFDANARRHTSFSSVYVFPVLDDTIEVNIRPEDLRVDTYRAGGAGGQHVNKTDSAVRL 249 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRS 303 TH+PTGI+V +E+SQ NR AM +L+ARLY+ R E + A K I G+ Sbjct: 250 THLPTGIVVACQNERSQISNRATAMSMLKARLYEYYRNEKEKENAKFAAEKKGISWGN-- 307 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 +IR+Y F + DHR ++ V+ G ID I L A + Sbjct: 308 -QIRSYIFQPYTMVKDHRTKHETGNIQAVMDGDIDGFIEDFLKKQWANQL 356 >gi|332671313|ref|YP_004454321.1| peptide chain release factor 1 [Cellulomonas fimi ATCC 484] gi|332340351|gb|AEE46934.1| peptide chain release factor 1 [Cellulomonas fimi ATCC 484] Length = 362 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 151/358 (42%), Positives = 212/358 (59%), Gaps = 19/358 (5%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L + AEIE R+++ +L YA + + + + Sbjct: 11 LLDEHAEIEARLADPAVHADAALARRLGRRYAELGRVAQAYRAWRAASDDA-------EA 63 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +E+ + E+ A++ R E + +L+P+D DD + ILEI+AG GG E+ALF Sbjct: 64 AAELAEVDEAFAAELPALQDVARTAEARLRDVLVPRDPDDARDVILEIKAGEGGEESALF 123 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFESG 181 GDL RMY RYA W+ +VL S+++D GG+K++ ++ GV++ +K+E G Sbjct: 124 AGDLLRMYTRYAERMGWQTQVLESTESDLGGFKDVHLSVKARGAVAPEDGVWAHLKYEGG 183 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 VHRVQRVP TE+ GR+HTSAA V VLPEA + +VDI D+RID R+SG GGQ VNTT Sbjct: 184 VHRVQRVPVTESQGRIHTSAAGVLVLPEAEDEGEVDIDPNDLRIDVYRSSGPGGQSVNTT 243 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V+ +EKSQ QNR +AM+VLRARL ++ A S R+ Q+ + Sbjct: 244 DSAVRITHLPTGIVVSMQNEKSQLQNREQAMRVLRARLLAARQEEAAAAASQARRSQVRT 303 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNF + RI DHR Y L+ VL G + ++ + A +A + SA E Sbjct: 304 VDRSERIRTYNFPENRIADHRTGYKAYNLDAVLGGDLGPVVQSAIDADEAARLASAGE 361 >gi|193216649|ref|YP_001999891.1| peptide chain release factor 1 [Mycoplasma arthritidis 158L3-1] gi|226739117|sp|B3PMD5|RF1_MYCA5 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|193001972|gb|ACF07187.1| peptide chain release factor 1 [Mycoplasma arthritidis 158L3-1] Length = 355 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 148/353 (41%), Positives = 219/353 (62%), Gaps = 8/353 (2%) Query: 9 ICDLKNRFAEIELRMSE---SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +K ++ + +++ + Y K+ +E+A+I I Y + + Sbjct: 5 LISIKEKYELLAQELTKLEIFNDIKKYTKIQKEHASIEDIAIAFINYLAAESSYNLSKEI 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D E+ LA+ ++ +++LE E+ LLLP+D +D+K+ I+EIR GG E Sbjct: 65 LQ-NEKDEELIALAKEDIDEQSTLMQKLEQELKELLLPQDENDNKNVIMEIRGAAGGDEG 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +F GDLF+MY+++ +K++++ S GGY IV + G VFS++KFE GVHRV Sbjct: 124 DIFSGDLFKMYQKFCEANDFKIKIVDSVYGTAGGYSRIVFIVKGEKVFSKLKFERGVHRV 183 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVP TE GRVHTS ATV VLPE + ++I EDI +D R+SG+GGQ VNTTDSAV Sbjct: 184 QRVPQTETQGRVHTSTATVTVLPEVDDDVKIEIRPEDIEVDVFRSSGAGGQSVNTTDSAV 243 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH TGI+V + E+SQ NR A+K+L+A+LY++E K+ E RKL G+GDRS Sbjct: 244 RITHKKTGIIVTSQDERSQIMNRETALKILKAKLYEIEVKKREEEEQGLRKLA-GTGDRS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 E+IRTYN+ Q RITDHRI +L L+ V++G +D II+ L+ +A I +A Sbjct: 303 EKIRTYNYPQDRITDHRIGFSLS-LKNVMEGNLDKIIDALIADEKALKIKAAG 354 >gi|238916331|ref|YP_002929848.1| peptide chain release factor RF-2 [Eubacterium eligens ATCC 27750] gi|238871691|gb|ACR71401.1| peptide chain release factor RF-2 [Eubacterium eligens ATCC 27750] Length = 372 Score = 226 bits (575), Expect = 5e-57, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 168/342 (49%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + R E+E M D K + + Y++ + D+ T+I Sbjct: 26 DLDNKQKRIEELEADMEAPGFWDNPDKSQNAMKELKGLKDAFERYNELETGLDDVKTLIE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ E+ + + + L D IL + AG GG+E+ Sbjct: 86 MAEESND--QSLIPEIEEEITNLEDKMESLRIETLLSGEHDACDAILTLHAGAGGTESCD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LFRMY R+A + E L + ++ G K + I G + +K E GVHR+ R Sbjct: 144 WCQMLFRMYTRWAESHGYTTETLDYLEGEEAGIKSVTIEIRGENAYGHLKSEHGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS + V+P+ +ID++I +D+RIDT R+SG+GGQH+N T SA+RI Sbjct: 204 ISPFNAAGKRQTSFVSCDVMPDINQDIDIEINDDDLRIDTYRSSGAGGQHINKTSSAIRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQHQN+ +AM++L+A+LY ++ A S R + + + Sbjct: 264 THLPTGIVVQCQNERSQHQNKDKAMQMLKAKLYLLKEAENAENLSGIR-GDVKDINFGSQ 322 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y + D+R N + VL G ID IN LT Sbjct: 323 IRSYVLQPYTMVKDNRTNKEVANAGSVLDGNIDPFINAYLTW 364 >gi|322389911|ref|ZP_08063451.1| peptide chain release factor RF2 [Streptococcus parasanguinis ATCC 903] gi|321143347|gb|EFX38785.1| peptide chain release factor RF2 [Streptococcus parasanguinis ATCC 903] Length = 336 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 184/341 (53%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E D I + ++ + + Q + ++ Sbjct: 1 MEEEIAILENKMTEPDFWDDNIAAQKTSQELNELKQTYENFHQMVDLFDESEILLDFLAE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ ++ ++K + E LL + D+ + ILEI G+GG+EA + Sbjct: 61 DDSVKEELIEKLEELDKRMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNAHGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDNTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F+ + DHR N + +++ V+ G ID I+ L Sbjct: 294 SYVFTPYTMVKDHRTNYEVAQVDKVMDGDIDGFIDAYLKWR 334 >gi|110834510|ref|YP_693369.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2] gi|110647621|emb|CAL17097.1| peptide chain release factor 1 [Alcanivorax borkumensis SK2] Length = 356 Score = 226 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 98/350 (28%), Positives = 171/350 (48%), Gaps = 22/350 (6%) Query: 11 DLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 R E+E + + L +E + + ++ I Q ++ L ++ Sbjct: 13 QKSERLTEVERELESPDVWNDPPYAQALGKERSQLEGVVKTIDDASQGLEDTSALLDLVV 72 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + ++ + +++ ++ ++ + + D S L+I++G+GG+EA Sbjct: 73 EEGDEDTLSEVE-----SDLRDLEKMVADLEFRRMFSGQMDPCSAYLDIQSGSGGTEAQD 127 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMY R+ +K E++ +S D G K G + ++ E+GVHR+ R Sbjct: 128 WAEMMLRMYLRWGEAHGFKTELVEASAGDVAGIKSATVRFEGDYAYGWLRTETGVHRLVR 187 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++ GR HTS ++V V PE + ++R+DT RASG+GGQHVN TDSAVR+ Sbjct: 188 KSPFDSGGRRHTSFSSVFVSPEVDDDIDIEIDLGNMRVDTYRASGAGGQHVNRTDSAVRL 247 Query: 247 TH--------IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQ 296 T+ T + SE+SQHQN+ +AMK+++A++Y++E +R E+ N K Sbjct: 248 TYLFKDDGGTEHTVVTQCQSERSQHQNKDKAMKMMQAKVYELEMQRRNAEKQALENSKAD 307 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 308 IGWG---SQIRSYVLDDARIKDLRTGVENRNTQAVLDGALDPFIEASLKA 354 >gi|319762196|ref|YP_004126133.1| peptide chain release factor 2 [Alicycliphilus denitrificans BC] gi|330825983|ref|YP_004389286.1| hypothetical protein Alide2_3440 [Alicycliphilus denitrificans K601] gi|317116757|gb|ADU99245.1| Peptide chain release factor 2 [Alicycliphilus denitrificans BC] gi|329311355|gb|AEB85770.1| hypothetical protein Alide2_3440 [Alicycliphilus denitrificans K601] Length = 367 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 169/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + K L +E + ++ + + + +L+ + Sbjct: 30 DAKYERLRTVNASLEDPNVWNDPKKAQELGKEKKLLDGVVLTLQKLTAELADNAELYEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + ++ + + ++ L E+ + + D +C ++I+AG GG+EA Sbjct: 90 REEGDEAGLLAIEGE-----AAKLLPLIEELEFRRMFSKEADPLNCYIDIQAGAGGTEAC 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L R Y +YA + +K V + D G K I G + ++ E+GVHR+ Sbjct: 145 DWAGMLLRQYLKYAERKGFKATVDEETPGDVAGIKSATIHIEGEYAYGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++SG HTS A++ V PE I+++I D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSSGGRHTSFASLFVYPEVDDSIEININPADVRTDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI+V +SQH NR A + LR++LY+ E ++ E+ + K +G G Sbjct: 265 LTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSKLYEHEMQKRMVEQQKLEDTKTDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I L Sbjct: 323 -HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEASLKQ 365 >gi|315077778|gb|EFT49829.1| peptide chain release factor 1 [Propionibacterium acnes HL053PA2] Length = 361 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 204/364 (56%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ R EIE ++++S + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRRLREIETQLADSAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDLT--EEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYTRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPSRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI ++R+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEVRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI+ +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLPTGIVASCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNFS+ R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFSENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|52425597|ref|YP_088734.1| peptide chain release factor 2 [Mannheimia succiniciproducens MBEL55E] gi|52307649|gb|AAU38149.1| PrfB protein [Mannheimia succiniciproducens MBEL55E] Length = 325 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + K L +E +A+ +++ I DQ ++ L + + + + Sbjct: 1 MEQPDVWNEPEKAQALGKERSALETVVNTIKKLDQGLEDVDGLLELAVEGEDEETFNEAV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E+ + ++ + + D C ++++AG+GG+EA + L RMY R+ Sbjct: 61 TE-----LDELEQQLAKLEFRRMFSGEHDACDCYIDLQAGSGGTEAQDWTEMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K E++ SD D G K +SG F ++ E+G+HR+ R +++ R HT Sbjct: 116 AESKGFKTELMEVSDGDVAGLKSATVKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A + PE + D+RID RASG+GGQHVN T+SAVRITHIP+GI+V Sbjct: 176 SFAAAFIYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPSGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+N+ + MK L+A+LY++E ++ ++ + K IG G +IR+Y R Sbjct: 236 NDRSQHKNKDQCMKQLKAKLYEMELQKKNADKQALEDSKSDIGWG---SQIRSYVLDDSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R + + VL G +D I L A Sbjct: 293 IKDLRTGVENRNTQAVLDGDLDRFIEASLKA 323 >gi|326561958|gb|EGE12292.1| peptide chain release factor 1 [Moraxella catarrhalis 103P14B1] Length = 319 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 154/323 (47%), Positives = 218/323 (67%), Gaps = 9/323 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ + +RF E+ +S+ ++ + +L+ E++ +S I + + Q + Sbjct: 1 MKESLRHRLDQMVDRFEEVTALLSDPDTISDNKKFRELSMEHSDLSEITTTWQDFVQAEA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q + ++ SD E++++A E+ I LE +N ++LPKD +D + LEIR Sbjct: 61 DLQTANELL----SDPEMKEMALDEIEVARANIETLEERLNVMMLPKDPNDKATAFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY++Y + W+VEVLS+++ + GGYKEI+A +SG GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYQKYTQSQGWQVEVLSANEGEHGGYKEIIARVSGIGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVAV+PE D +I D+RIDT R+SG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAVMPEVEIDDTVEINPSDLRIDTYRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTG++ E+SQH N+ +AMK+L AR+ + + + S R+ Sbjct: 237 VNTTDSAVRITHIPTGVVAECQQERSQHANKEKAMKMLVARIQQAKVQAQIDATSDMRRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRITD 318 +GSGDRSERIRTYNF QGR+TD Sbjct: 297 LVGSGDRSERIRTYNFPQGRMTD 319 >gi|15828576|ref|NP_325936.1| peptide chain release factor 1 [Mycoplasma pulmonis UAB CTIP] gi|20139344|sp|Q98RA5|RF1_MYCPU RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|14089518|emb|CAC13278.1| PEPTIDE CHAIN RELEASE FACTOR 1 (RF-1) [Mycoplasma pulmonis] Length = 359 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 151/361 (41%), Positives = 218/361 (60%), Gaps = 8/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M + + + +++ E+ + + + Y K + E +I I + S Y ++ Sbjct: 1 MEKSMYNSLKSILDKYQELNQELLKPEVLSDIKLYKKFSRELNSIKSISEEFSKYLNYEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++ D E+ LA+ E+L E+++ L E+ LLLPKD +D+ I+EIR Sbjct: 61 TIESSKIILAQEK-DEELISLAKKEILECEEKMSSLVEELKILLLPKDKNDELDVIMEIR 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDLF MY ++A KV VL + GG+ IV TISG +S++K Sbjct: 120 GAAGGDEANIFAGDLFEMYSKWANNNNMKVSVLDRNYATSGGFTLIVFTISGEKAYSKLK 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQR+P TE+ GRVHTS ATV +PE + +V+I D++IDT R+SG+GGQ Sbjct: 180 FESGVHRVQRIPVTESKGRVHTSTATVTAMPEIDDDIEVEINPSDLKIDTFRSSGAGGQS 239 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIPTGI+ + +SQ NR A+K+L+A+LYD E ++ + RKL Sbjct: 240 VNTTDSAVRITHIPTGIISSSQEGRSQISNRELALKILKAKLYDHENQKKLEKVGQYRKL 299 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 GSG RSE+IRTYN+ Q R+TDHRIN + L+ +++G + II+ LL QA+ I Sbjct: 300 A-GSGARSEKIRTYNYPQDRVTDHRINFSSS-LKQIMEGKLQIIIDSLLAEEQAEKIKEV 357 Query: 356 S 356 Sbjct: 358 G 358 >gi|253752128|ref|YP_003025269.1| peptide chain release factor 2 [Streptococcus suis SC84] gi|253753953|ref|YP_003027094.1| peptide chain release factor 2 [Streptococcus suis P1/7] gi|253755172|ref|YP_003028312.1| peptide chain release factor 2 [Streptococcus suis BM407] gi|251816417|emb|CAZ52048.1| peptide chain release factor 2 [Streptococcus suis SC84] gi|251817636|emb|CAZ55384.1| peptide chain release factor 2 [Streptococcus suis BM407] gi|251820199|emb|CAR46580.1| peptide chain release factor 2 [Streptococcus suis P1/7] Length = 364 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 185/345 (53%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E + + + ++ + + + Q + ++ Sbjct: 25 DLEGLEEEIAILENKMTEPDFWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLD 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D +RD +++ ++K + E LL + D + ILEI G+GG+EA Sbjct: 85 FLAEDESVRDELVEKLVELDKTMTAYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY+RY + + VE L D+ G K + + +G + +K E GVHR+ R Sbjct: 141 WGEMLLRMYQRYGNAKGFIVETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+++I +++++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFTSVEVMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+ S+ +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G Sbjct: 261 THIPTGIVTQSTVDRTQYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F+ + DHR + +++ V+ G +D I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTGYEVAQVDKVMDGDLDGFIDAYLKWR 362 >gi|281357586|ref|ZP_06244073.1| peptide chain release factor 2 [Victivallis vadensis ATCC BAA-548] gi|281315843|gb|EFA99869.1| peptide chain release factor 2 [Victivallis vadensis ATCC BAA-548] Length = 364 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 113/343 (32%), Positives = 173/343 (50%), Gaps = 8/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I D K AE+E +MS D A +S + + + + + E +D + Sbjct: 27 IEDRKAEMAELEQKMSAPDFWDNKESAQNTVAQLSACRNLLEPFRKLQSEVEDYSASVEL 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E +I + K + +E + D + + AG GG+E+ + Sbjct: 87 AAEDEEFLQETEISYRRLLKSLDRME----IMSFLSGKFDRSNLYFSVHAGAGGTESCDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY R WK EV+ ++ G K ++G + MK E GVHR+ R+ Sbjct: 143 ANMLLRMYRRYFERRGWKDEVIDLQPGEEAGVKSATLHVTGEFAYGYMKGEKGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS +V V PE +I+++I +RIDT R+SG+GGQHVNTTDSA+RIT Sbjct: 203 SPFDSNARRHTSFVSVDVFPELDDDIEIEIDESQLRIDTYRSSGAGGQHVNTTDSAIRIT 262 Query: 248 HIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +SQH+NR AMK+L+A+LY+ E ++ NE A R + +G +I Sbjct: 263 HLPTGIVVCCQNERSQHKNRATAMKMLKAKLYEFEEEKRRNEADAIRGEKAENG-WGSQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 R+Y + + D R + VL G ID+ I L + + Sbjct: 322 RSYVLQPYQMVKDLRTEVETSDTAGVLDGDIDEFIEAYLKSAR 364 >gi|296876160|ref|ZP_06900214.1| peptide chain release factor RF2 [Streptococcus parasanguinis ATCC 15912] gi|312867359|ref|ZP_07727568.1| peptide chain release factor 2 [Streptococcus parasanguinis F0405] gi|296432871|gb|EFH18664.1| peptide chain release factor RF2 [Streptococcus parasanguinis ATCC 15912] gi|311097060|gb|EFQ55295.1| peptide chain release factor 2 [Streptococcus parasanguinis F0405] Length = 336 Score = 225 bits (574), Expect = 6e-57, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 184/341 (53%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E D I + ++ + + Q + ++ Sbjct: 1 MEEEIAILENKMTEPDFWDDNIAAQKTSQELNELKQTYENFHQMVDLFDESEILLDFLAE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ ++ ++K + E LL + D+ + ILEI G+GG+EA + Sbjct: 61 DDSVKEELIEKLEELDKRMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNAHGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F+ + DHR N + +++ V+ G ID I+ L Sbjct: 294 SYVFTPYTMVKDHRTNYEVAQVDKVMDGDIDGFIDAYLKWR 334 >gi|147679087|ref|YP_001213302.1| protein chain release factor B [Pelotomaculum thermopropionicum SI] gi|146275184|dbj|BAF60933.1| protein chain release factor B [Pelotomaculum thermopropionicum SI] Length = 336 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 117/338 (34%), Positives = 179/338 (52%), Gaps = 10/338 (2%) Query: 19 IELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 +E +M E D K + +S + +++++ + ++ +DL + + + Sbjct: 2 LERQMLEPGFWDGQEKAQKAVQRLSSLRDRVAVFQRLDKDLEDLEVLAELGEEEEDEAAA 61 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 A+++ + E + +L D + I+ + AG GG+EA +V L RMY R Sbjct: 62 AEVKQGLAVVAQKVAE--MELTVLLSGPYDRGNAIVALHAGAGGTEAQDWVEMLLRMYTR 119 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A R +KVEVL D+ G K + G + ++ E GVHR+ R+ +A+GR H Sbjct: 120 WAERRGFKVEVLDLLPGDEAGTKSATIEVIGPNAYGYLRSEKGVHRLVRISPFDAAGRRH 179 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V VLPE + DV I +D++IDT R+ G+GGQHVN TDSAVRITH+PTGI+V Sbjct: 180 TSFASVDVLPEVDDEVDVKINPDDLKIDTFRSGGAGGQHVNKTDSAVRITHLPTGIVVTC 239 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ NRL AMK+L+ARL D+E ++ E +A R Q I G +IR+Y F Sbjct: 240 QNERSQLANRLAAMKMLKARLIDLELRKKEAELAALRGEQQEIAWG---SQIRSYVFHPY 296 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR + V+ G ID I L + Sbjct: 297 SLVKDHRTGHETGNVGAVMDGEIDSFIAAYLRENARAQ 334 >gi|330465934|ref|YP_004403677.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032] gi|328808905|gb|AEB43077.1| peptide chain release factor 2 [Verrucosispora maris AB-18-032] Length = 373 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 165/349 (47%), Gaps = 7/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E S D + + + +S + +I + D + ++ Sbjct: 25 DLDRLRADKARLEQEASAPDLWDDQARAQQVTSQLSYVNGEIEKLGSLRSRIDDANVLLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++++ L+++E E + L D + ++ IRAG GG +AA Sbjct: 85 LAEAEADSGVLSEVESEITGLAKAIQE--MEVRTLLSGEYDSREALVAIRAGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + EV +S ++ G K T+ + + ESG HR+ R Sbjct: 143 FAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +DIP ++RID R+SG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDSIDIPENEMRIDVYRSSGPGGQSVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN+ A++VL+ARL + +R+ + + + GS ++ Sbjct: 263 THIPTGIVVTCQNEKSQLQNKASALRVLQARLLERKRQEEQAKMAGLKTDAAGS--WGDQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +R+Y + + D R V G +D I + + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEQETGNPSAVFDGDLDSFIEAGIRWRKQQQLA 369 >gi|256390605|ref|YP_003112169.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928] gi|256356831|gb|ACU70328.1| peptide chain release factor 2 [Catenulispora acidiphila DSM 44928] Length = 368 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 168/346 (48%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ + A++E + S D K + +S + ++++ + + +D+ + Sbjct: 24 DLGKLRAQIADLEEQASAPDLWDDQAKAQAVTSKLSGLQAELNRFSTLNRRLEDIEVLFE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 S+ + LA+++ ++ E L D + ++ +RA GG +AA Sbjct: 84 LGQSEGDEDALAEVQGELVDVSKAVGEL--EVRTLLSGEYDAREALVTLRAEAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A ++ EV +S ++ G K T+ + + E G HR+ R Sbjct: 142 FAEMLLRMYTRWAERHNYQYEVYDTSYAEEAGIKSATLTVKAPYAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P VDIP +++R+D R+SG GGQ VNTTDSAVRI Sbjct: 202 ISPFDNQGRRQTSFAGVEVVPVVEQSDHVDIPEDELRVDVYRSSGPGGQGVNTTDSAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+P+GI+V +E+SQ QNR AM VL+A+L R+ + A + SG + Sbjct: 262 THLPSGIVVSCQNERSQIQNRASAMAVLQAKLLQRRREEEQAKMDALK--DDSSGSWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R N VL G ID+ I + + + Sbjct: 320 MRSYVLHPYQLVKDLRTNYETGNTTAVLDGDIDEFIEAGIRWRKQR 365 >gi|240169515|ref|ZP_04748174.1| peptide chain release factor 1 [Mycobacterium kansasii ATCC 12478] Length = 357 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 149/336 (44%), Positives = 203/336 (60%), Gaps = 17/336 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L A++E +S+ K +A ++PI++ +++ + + Sbjct: 8 IDVLLAEHADLEHALSDPELHSNPGAARKAGRRFALLAPIVATHRKLVAAREDLETAREL 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + DS + + A++ E + EL+ ++ +L P+D D +LE+++G GG E+ Sbjct: 68 AA--SDDSFVAEAAEL-----EARVAELDAQLTDMLAPRDPHDADDIVLEVKSGEGGEES 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-----SGRGVFSRMKFES 180 ALF DL RMY RYA R W V VL + +D GGYK+ I S GV+SRMKFE Sbjct: 121 ALFAADLARMYIRYAERRGWTVTVLDETTSDLGGYKDATLAIASKGDSVDGVWSRMKFEG 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V V PE E+ +V I D+RID R+SG GGQ VNT Sbjct: 181 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVGEVQIDESDLRIDVYRSSGKGGQGVNT 240 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RA++VL ARL + ++ + SA+R QI Sbjct: 241 TDSAVRITHLPTGIVVTCQNERSQLQNKTRALQVLAARLQSMAEEQALADASADRASQIR 300 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 + DRSERIRTYNF + RITDHRI Y L+ VL G Sbjct: 301 TVDRSERIRTYNFPENRITDHRIGYKAYNLDQVLDG 336 >gi|110801299|ref|YP_696849.1| peptide chain release factor 2 [Clostridium perfringens ATCC 13124] Length = 362 Score = 225 bits (574), Expect = 7e-57, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 174/346 (50%), Gaps = 9/346 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + L+ + AE+EL+M E+ D K E + KI + + D+ Sbjct: 20 MGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDV 79 Query: 63 HTVIG-DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +D E EV A+ KEI L + D IL + G G Sbjct: 80 EVLKELMEENDEETAKEIISEVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVG 135 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 GS+A + L RMY R+ + + +E + D+ G K + + G + +K E G Sbjct: 136 GSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKG 195 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ A+G+ TS A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T Sbjct: 196 IHRLVRISPFNANGKRQTSFASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKT 255 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITHIPTGI+V +E+SQ NR AM +L+++L +++ +R E+ + ++ Sbjct: 256 ESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKD 314 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y F + DHR N+ + V+ G ID+ I L Sbjct: 315 MGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMDGDIDNFIIAYL 360 >gi|329571835|gb|EGG53513.1| peptide chain release factor 2 [Enterococcus faecalis TX1467] Length = 327 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 102/328 (31%), Positives = 167/328 (50%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D + + + K + Q +E +L + + + ++E Sbjct: 1 MGEPGFWDNTETAQKLINETNSLKEKYQQFHQLSEELDELTVMFELQQEEYDTEIQEELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + R LL + D + ++E+ G GG+E+ + L RMY R+A Sbjct: 61 ERIHLLQERL--TTYELSLLLNEPYDHNNALIELHPGAGGTESQDWGSMLLRMYTRWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGFQVETLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRILPFDSAKRRHTSFC 178 Query: 203 TVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + +++ Sbjct: 179 SVDVMPELDDTIEIAINPDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR +AM +L+A+LY +E ++ A E ++ R Q+ G +IR+Y F + DH Sbjct: 239 SQLKNREQAMSMLKAKLYQLEMEKKAQEAASLRGEQMEIG-WGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N ++ V+ G +D I+ L Sbjct: 298 RTNYETGNVQAVMDGDLDGFIDAYLKQR 325 >gi|302385044|ref|YP_003820866.1| hypothetical protein Closa_0615 [Clostridium saccharolyticum WM1] gi|302195672|gb|ADL03243.1| hypothetical protein Closa_0615 [Clostridium saccharolyticum WM1] Length = 377 Score = 225 bits (573), Expect = 7e-57, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 183/344 (53%), Gaps = 10/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R E++ M E + K + + + Y + +++ +D+ +I Sbjct: 26 DLDNKLKRIDELDKSMEEPGFWEDPEKSAKIVQLAKNLKDTVQSYQELERQYEDIGVMIE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N +++ L + + LE+ LL + D + IL + AG GG+E+ Sbjct: 86 MGNEENDP-SLVPEVEEMLREFKESLESMRINTLLSGEYDS-DNAILRLNAGAGGTESCD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L+RM+ R+A + + +EVL D ++ G K + I+G + +K E GVHR+ R Sbjct: 144 WCGMLYRMFCRWAEKKGFSLEVLDYLDGEEAGIKSVTVQINGPNAYGYLKSEKGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS + V+P+ E DV+I ED+RIDT R+SG+GGQH+N T SA+RI Sbjct: 204 ISPFNAAGKRQTSFVSCDVMPDIEEDLDVEINEEDLRIDTYRSSGAGGQHINKTSSAIRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRS 303 TH+PTGI+V +E+SQ QN+ +AM++L+A+LY ++++ A + S R +IG G+ Sbjct: 264 THLPTGIVVQCQNERSQFQNKDKAMQMLKAKLYMLKQQENAEKLSGIRGDVTEIGWGN-- 321 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + DHR N + VL G +D + L Sbjct: 322 -QIRSYVLQPYTMVKDHRTNAETGNVGSVLDGSLDQFMYAYLRW 364 >gi|302671676|ref|YP_003831636.1| peptide chain release factor 2 PrfB [Butyrivibrio proteoclasticus B316] gi|302396149|gb|ADL35054.1| peptide chain release factor 2 PrfB [Butyrivibrio proteoclasticus B316] Length = 380 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 168/334 (50%), Gaps = 4/334 (1%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 E+ M E D K ++ + + ++ ++ + D+ +I N++ Sbjct: 34 IEELSREMEEPGFWDNAEKANKKTKDLKNMQDLVADIERLNSQYTDIIDLIDMQNAEGVD 93 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 D E+ + E E I L D IL + AG GG+EA + L+RM Sbjct: 94 DDDMAAEIRSELDEFEEKLENIRISNLLNQPYDKYDVILRLNAGAGGTEACDWASMLYRM 153 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A + + EVL D D+ G K + ISG + +K E GVHR+ R+ A Sbjct: 154 YTRWAERKGFTTEVLDLLDGDEAGIKSVTFQISGTNAYGLLKSEHGVHRLVRISPFNAQA 213 Query: 196 RVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 + TS + V+P+ E D++I +D+RIDT R+SG+GGQH+N T SAVRITHIPTG++ Sbjct: 214 KRQTSFVSCDVMPDIEEDLDIEINPDDLRIDTYRSSGAGGQHINKTSSAVRITHIPTGVV 273 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V +E+SQ QN+ +AM++L+A+L+ ++++ A + + R ++ +IR+Y Sbjct: 274 VACQNERSQFQNKDKAMQMLKAKLFIMKQEEQAAKLAGIR-GEVMDNAWGSQIRSYVLQP 332 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R + VL G +D IN L Sbjct: 333 YTMVNDTRTGFKASNADGVLDGELDPFINAYLKW 366 >gi|16126117|ref|NP_420681.1| peptide chain release factor 2 [Caulobacter crescentus CB15] gi|221234887|ref|YP_002517323.1| peptide chain release factor 2 [Caulobacter crescentus NA1000] gi|24638156|sp|Q9A752|RF2_CAUCR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790910|sp|B8GWM3|RF2_CAUCN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|13423319|gb|AAK23849.1| peptide chain release factor 2 [Caulobacter crescentus CB15] gi|220964059|gb|ACL95415.1| bacterial peptide chain Release factor 2 (RF-2) [Caulobacter crescentus NA1000] Length = 371 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 168/342 (49%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+ R+ + D ++ E A ++ + + ++ ++ + + + Sbjct: 27 RKLDELNARVEDPTLWDRPSEAQAVSRERANLAAKVEAVQSIERDLKDALEYAELAEMES 86 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + D A K ++E L D C +EI +G GG+E+ + G Sbjct: 87 DEDSLNDAR-----AQLKSLKERAGRAELEALLSGEADGNDCYVEINSGAGGTESCDWAG 141 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A E++ +D D G K + G + +K E+GVHR+ R+ Sbjct: 142 ILLRMYTRWANAHGMTTELIEETDGDQAGIKSATLLVKGANAYGWLKTEAGVHRLVRISP 201 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS A+ V P I+++I D+R DT RASG+GGQH+N TDSAVR+THI Sbjct: 202 YDSSARRHTSFASAWVYPVVDDNIEIEINPSDVRTDTYRASGAGGQHINKTDSAVRLTHI 261 Query: 250 PTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI + + +SQHQNR A K+LRARLY+ E ++ + ++K IG G +I Sbjct: 262 PTGIAVACQAGRSQHQNREEAWKMLRARLYEAELQKREAAQQALEDQKTDIGWG---HQI 318 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R N+ + VL G +D + L Sbjct: 319 RSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDAFMAASLAQR 360 >gi|299821880|ref|ZP_07053768.1| peptide chain release factor RF2 [Listeria grayi DSM 20601] gi|299817545|gb|EFI84781.1| peptide chain release factor RF2 [Listeria grayi DSM 20601] Length = 338 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 114/341 (33%), Positives = 192/341 (56%), Gaps = 14/341 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--H 69 ++ R AE+E +M + + + + + Q ++++++L + Sbjct: 1 MEARIAELEDQMLDPSFWNDQQGAQTVINEANGLKDTYQAFHQLEEQQENLEVSLELLRE 60 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D+++++ + E+ +E+++ E ++ + D + ILEI G GG+E+ + Sbjct: 61 ELDADLKEQVEEELQTFVRELKDFEL----KMILSEPYDKNNAILEIHPGAGGTESQDWG 116 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY+R+A + +KVE+L D+ G K + I G + +K E G+HR+ R+ Sbjct: 117 SMLLRMYQRFADKKGFKVEMLDYQAGDEAGIKSVTLLIKGLNAYGYLKAEKGIHRLVRIS 176 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+TH Sbjct: 177 PFDSSGRRHTSFVSVDVMPELNDDIEIEVRPEDLKIDTYRATGAGGQHINTTDSAVRMTH 236 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSER 305 +PTGI+V SE+SQ +NR +AMK+L+ +LY E++ E +A R Q IG G + Sbjct: 237 LPTGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKEQELAAIRGEQKEIGWG---SQ 293 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y F + DHR + + V+ G IDD IN L Sbjct: 294 IRSYVFHPYSMVKDHRTEVETGNTQAVMDGEIDDFINAYLR 334 >gi|323143525|ref|ZP_08078205.1| peptide chain release factor 2 [Succinatimonas hippei YIT 12066] gi|322416719|gb|EFY07373.1| peptide chain release factor 2 [Succinatimonas hippei YIT 12066] Length = 347 Score = 225 bits (573), Expect = 8e-57, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 175/352 (49%), Gaps = 15/352 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M+ K R E+ + + + K L +E +S ++S+ Sbjct: 1 MLLGGIFDFETKKERLEEVNGLLEDPQVWNDPEKAQQLGKERQVLSSVVSRFDKLYSGFD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + L + + + I++ + ++ E+ N + + + +D+ C ++I+ Sbjct: 61 DVLMLFELGSEEGDEDSIKEA-----YSEADKLEEVLNALEFERMFSKPNDNSDCYMDIQ 115 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 +G+GG+EA + + RMY ++ + V+ S+ + G K +G F ++ Sbjct: 116 SGSGGTEAQDWAEMVMRMYLKFGEKHGFDCTVIECSEGEVAGIKSATLKFAGPYAFGWLR 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 E+G+HR+ R +++ R HTS + V PE V+I D++ID R+SG+GGQH Sbjct: 176 TETGIHRLVRKSPFDSNNRRHTSFCSAFVYPEIDNDIKVEINPADLKIDVFRSSGAGGQH 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANR 293 VN T+SAVRITHIPTG++V +E+SQ QNR +AMK LRA+LY++E ++ +E+ + Sbjct: 236 VNKTESAVRITHIPTGVVVSCQNERSQFQNRDQAMKQLRAKLYELELRKQQSEQQAIEDS 295 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 K IG G +IR+Y R+ D R + + VL G +D I L Sbjct: 296 KADIGWG---SQIRSYVLDDARVKDLRTQVECRDTQRVLNGDLDQFIEASLK 344 >gi|326204357|ref|ZP_08194215.1| peptide chain release factor 2 [Clostridium papyrosolvens DSM 2782] gi|325985389|gb|EGD46227.1| peptide chain release factor 2 [Clostridium papyrosolvens DSM 2782] Length = 373 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 184/351 (52%), Gaps = 6/351 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + I + + AE+E + SE + + + +KI ++ + +DL Sbjct: 21 MRASLDIASISDEIAELEHKASEPEFWNDMENSQKILQKTKILKTKIDRFNNITSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 T+ E + EV + ++ + L D + IL + AG GG Sbjct: 81 FTLSEL--GLEEQDESVIPEVGEGLQLLKHNLEALRLETLLTGPYDKNNAILTLHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V L RM+ R+ + ++V++L D D+ G K + + G + +K E GV Sbjct: 139 TEAQDWVQMLLRMFTRWGEAKGYEVKILDYLDGDEAGIKSVTIHVIGENAYGYLKSEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ ++SGR HTS A+ V+PE I+++I +D+R+DT RASG+GGQH+N TD Sbjct: 199 HRLVRISPFDSSGRRHTSFASADVMPELDDTIEININPDDLRVDTYRASGAGGQHINKTD 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SA+RITHIPTG++V +E+SQ QN+ AMK+L+A+L++++ + + + +Q+ Sbjct: 259 SAIRITHIPTGVVVSCQTERSQFQNKDTAMKMLKAKLFELKEREQKEKIEDLKGVQME-I 317 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F + DHR N ++ V+ G +D IN L+ ++ Sbjct: 318 AWGSQIRSYVFCPYTLVKDHRTNYEEGNVDAVMDGELDGFINAYLSMEKSD 368 >gi|149374726|ref|ZP_01892500.1| peptide chain release factor 2 [Marinobacter algicola DG893] gi|149361429|gb|EDM49879.1| peptide chain release factor 2 [Marinobacter algicola DG893] Length = 351 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 168/340 (49%), Gaps = 15/340 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+E + + L +E + + I+ I ++ + L + + Sbjct: 18 ERLTEVERELEVPSVWEDPERAQALGKERSDLELIVRTIDNLTSGLEDAEGLLEIADEEE 77 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + ++ ++ + + + + D + L+I+AG+GG+EA + Sbjct: 78 DEGTAAEIEADLAGLDKELEK-----LEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWGN 132 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +K E++ + D G K I G F ++ E+GVHR+ R Sbjct: 133 MLLRMYLRWAERRGFKAEIVELQEGDVAGIKSATIHIQGDYAFGWLRTETGVHRLVRKSP 192 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS ++V V PE +++I D+R+D RASG+GGQHVN T+SAVR+TH Sbjct: 193 FDSGNRRHTSFSSVFVSPEVDDSFEIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHN 252 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERI 306 PTGI+V + +SQHQN+ +AMK L+A+L++ E + E+ + + K IG G +I Sbjct: 253 PTGIVVACQAGRSQHQNKDQAMKQLKAKLFEREMQERNAEKQKAEDAKADIGWG---SQI 309 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G ID I L Sbjct: 310 RSYVLDDSRIKDLRTKVETSNTQSVLDGDIDKFIEASLKM 349 >gi|269836751|ref|YP_003318979.1| hypothetical protein Sthe_0720 [Sphaerobacter thermophilus DSM 20745] gi|269786014|gb|ACZ38157.1| conserved hypothetical protein [Sphaerobacter thermophilus DSM 20745] Length = 369 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 183/353 (51%), Gaps = 12/353 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E R ++ + + + +++ + + Q+ DL +I Sbjct: 25 DLPAKQREIEELEARSADPEFWNDGAGAQRVMRRLGALRNQVETWTELHQQAADLRELID 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +D ++RD E + + + +LE LL D+ I+ I AGTGG +A Sbjct: 85 LAEADDDLRDEIAAETERVLRGVEQLELN----LLLSGQYDEHDAIMAIHAGTGGVDAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A+ R ++ +VL ++ ++ G K I G + K E+G HR+ R Sbjct: 141 WAEMLMRMYLRWASNRGFQAQVLDVTEGEEAGIKSATIEIRGPYAYGYTKGEAGTHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + + R HT+ A V VLP+ E I ++IRIDT R+SG+GGQHVN TDSAVRI Sbjct: 201 LSPFDQAHRRHTAFALVEVLPQVEEDTEIVIRDDEIRIDTYRSSGAGGQHVNKTDSAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QNR AMK+LRARL ++ ++ E++ + + G R Sbjct: 261 THLPTGIVVTCQNERSQIQNRETAMKILRARLTELAIRKREEEQAKLKGEHVAVG-WGNR 319 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR+Y +TDHR + ++ V +G ID I L + +G+A E Sbjct: 320 IRSYVLQPYTMVTDHRTEYSTSNVQAVFEGEIDPFIEAYLH----QQLGAADE 368 >gi|270157123|ref|ZP_06185780.1| peptide chain release factor 2 [Legionella longbeachae D-4968] gi|289164472|ref|YP_003454610.1| peptide chain release factor 2 [Legionella longbeachae NSW150] gi|269989148|gb|EEZ95402.1| peptide chain release factor 2 [Legionella longbeachae D-4968] gi|288857645|emb|CBJ11485.1| putative peptide chain release factor 2 [Legionella longbeachae NSW150] Length = 336 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 107/337 (31%), Positives = 170/337 (50%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + S D L E + ++S ++ Q + +L + + + + Sbjct: 2 EEVVRELESSTIWDNPEVAQALGREQTQLEALVSTLTQLGQSITDLNELFEMAREESDEQ 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 I ++++ + + + ++ + + DD + L+I++G+GG+EA + L Sbjct: 62 TINEISEE-----LQTVEKKVADLEFRRMFSGKMDDSNAYLDIQSGSGGTEAQDWAEMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+ + E++ S D G K G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWGEQHGFTTELIECSPGDVAGIKSATIYFQGEYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V V PE + D+RIDT RASG+GGQHVN TDSAVRITH P+G Sbjct: 177 GNRRHTSFAAVFVSPEIDDDIDIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHAPSG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +AMK LRA+LY++E ++ E+ A K IG G +IR+Y Sbjct: 237 IVVQCQTDRSQHRNKDQAMKQLRAKLYELEMQKKNAEQQALEASKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D I L A Sbjct: 294 VLDQSRIKDLRTGVETSNTQAVLDGALDQFIEASLKA 330 >gi|172040385|ref|YP_001800099.1| peptide chain release factor 1 [Corynebacterium urealyticum DSM 7109] gi|171851689|emb|CAQ04665.1| peptide chain release factor RF-1 [Corynebacterium urealyticum DSM 7109] Length = 371 Score = 225 bits (573), Expect = 9e-57, Method: Composition-based stats. Identities = 136/358 (37%), Positives = 207/358 (57%), Gaps = 17/358 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + D+ + + +E ++++ + ++ + + + P+I + +++ + + Sbjct: 21 MDDILSEYQGLEAQLADPELHNDPKAARRVGKRFQELQPVIQTYERLNTAREDHEAAAEM 80 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +E +E EI EL+ ++ LL P+D + I+EI++G GG EA Sbjct: 81 ASEDAEFAEEA-------TRLEAEIEELQEKLTDLLAPRDPKNGDDIIMEIKSGAGGEEA 133 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF G+L RMY+RYA + EVL ++ D GG K++ +I + ++ KFE Sbjct: 134 ALFAGELARMYQRYAERHGFATEVLGLNETDLGGVKDMTMSIRSKQPSRDGAWADFKFEG 193 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+ TSAA V V PE E DV+I +DIR+D R+SG GGQ VNT Sbjct: 194 GVHRVQRVPVTESQGRIQTSAAGVLVYPEPDEVEDVEIDEKDIRVDVYRSSGKGGQGVNT 253 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTG++V E+SQ QNR RAM+VL ARL ++ + E + R QI Sbjct: 254 TDSAVRITHLPTGVVVTCQKERSQIQNRARAMQVLAARLQQMKEEEAEAEAAEGRAAQIR 313 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + DRSERIRTYNF + R++DHRI L+ VL G ++ + L A + + + + S Sbjct: 314 TMDRSERIRTYNFPESRVSDHRIGYKANNLDSVLDGDLESLFAALKEAERIERLEAES 371 >gi|289450201|ref|YP_003475113.1| peptide chain release factor 2 [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184748|gb|ADC91173.1| peptide chain release factor 2 [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 369 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/346 (33%), Positives = 182/346 (52%), Gaps = 6/346 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R +E+E R E + K E ++ + K+ Y ++E D+ T+I Sbjct: 27 IEPTLDRISELEARTQEPDFWNDQTKAQEVQTKLAGLQRKVDTYRHLQKEFDDIDTLIDL 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E EV +EL N++ L D + IL I AG GG+EA + Sbjct: 87 --GQEENDGAVVAEVQTQFNAFKELFNKLRLQTLLVGEYDRNNVILNIHAGAGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+A ++++VL D D+ G K + I G + M+ E GVHR+ R+ Sbjct: 145 TEMLYRMYTRWAEDHDYQLKVLDILDGDEAGLKSVSFEIIGENAYGYMRSEMGVHRLVRI 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +ASGR HTS A+V VLPE I ++I +D+RID R+SG+GGQHVN T+SA+RIT Sbjct: 205 SPFDASGRRHTSFASVEVLPELDNSIQININPDDLRIDRYRSSGAGGQHVNKTESAIRIT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V +E+SQ QNR AM +L+++L+ + + ++ + Q+ +I Sbjct: 265 HIPTGVVVSCQTERSQIQNRETAMNMLKSKLFALAKAAQMDKVDDLKGNQM-DIAWGSQI 323 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+Y F + DHR N + ++ V+ G +D IN L+ + Sbjct: 324 RSYVFCPYTMVKDHRTNYEVTGVDKVMDGDLDGFINAYLSQGKQDK 369 >gi|116333278|ref|YP_794805.1| protein chain release factor B [Lactobacillus brevis ATCC 367] gi|116098625|gb|ABJ63774.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus brevis ATCC 367] Length = 343 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 103/338 (30%), Positives = 166/338 (49%), Gaps = 12/338 (3%) Query: 20 ELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E +M++ D +E + + + + ++ ++ + Sbjct: 9 EGQMAQPDFWDDAQAAQLLIDETNEMKKKVDEFQRLVTQVEDLMVALELLQEEPDAEMQA 68 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + A + LL D + +LEI G GG+E+ + L RMY Sbjct: 69 EFETDFATAQAALRQ-----YRLNLLLNQKYDHNNALLEIHPGAGGTESQDWGDMLLRMY 123 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A +KV VL D G + I+GR + ++ E GVHR+ R+ +++GR Sbjct: 124 TRWAEQHDFKVTVLDYQPGDVAGLSSVTLAIAGRNAYGYLRSEKGVHRLVRISPFDSAGR 183 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A+V VLPE +D+DI ++++D RASG+GGQHVN T SAVRITHIPTGI+ Sbjct: 184 RHTSFASVDVLPELDDSVDIDINPAELKVDVYRASGAGGQHVNKTSSAVRITHIPTGIVT 243 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 + +++SQ QNR A+ +LRA+LY+ ++ A E++A Q+ G +IR+Y F Sbjct: 244 QSQAQRSQLQNRQTALAMLRAKLYERAEEKKAQEKAALEGDQMEIG-WGSQIRSYVFHPY 302 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N + V+ G +D I+ L ++ Sbjct: 303 TMVKDHRTNYETGNGQAVMDGDLDPFIDAFLQWQLSQK 340 >gi|222152785|ref|YP_002561962.1| peptide chain release factor 2 [Streptococcus uberis 0140J] gi|254790921|sp|B9DRN6|RF2_STRU0 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|222113598|emb|CAR41450.1| peptide chain release factor 2 [Streptococcus uberis 0140J] Length = 366 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 186/345 (53%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E + I + ++ + S + + + + Sbjct: 25 DLDGLEEEIALLENKMTEPDFWNDNIAAQKTSQELNTLKSTFETFHDMLELSDETELYLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D I++ + ++ ++ ++ LL + D + ILEI G+GG+EA Sbjct: 85 MLAEDESIKEELE----EALVKLEQILSQYEMTLLLSEPYDHNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LFRMY R+ + +KVE L D+ G K + + G + +K E GVHR+ R Sbjct: 141 WADMLFRMYTRFGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFTSVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G Sbjct: 261 THIPTGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F+ + DHR N + +++ V+ G ID I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTNFEVAQVDKVMDGEIDGFIDAYLKWR 362 >gi|119952993|ref|YP_945202.1| peptide chain release factor 1 [Borrelia turicatae 91E135] gi|254790864|sp|A1QYZ0|RF1_BORT9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|119861764|gb|AAX17532.1| bacterial peptide chain release factor 1 [Borrelia turicatae 91E135] Length = 357 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 155/336 (46%), Positives = 236/336 (70%), Gaps = 5/336 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + +++ ++++ +E ++ ++ + Y K+ +EY + I K Y+ + Sbjct: 1 MFLERLSPIESKIKILEEKLQDTNLIKNQKEYAKVIKEYNYLEKIKEKKDEYENIISQID 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + ++ + + E+++L + E+ + + E+E+ I LLL +D +D+K+ I+EIRAGT Sbjct: 61 ENQKILSEEEN-LEMKELIKQELTHLNLKKDEIEHTIKILLLHQDENDNKNIIIEIRAGT 119 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+KE+ I G+ VF ++K ES Sbjct: 120 GGEEAALFAHNLYEMYTKYSEKKKWKTELINFNETELGGFKEVSFEIKGKEVFKKLKHES 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE++GR+ TSAATVAVLPE E D++I +D+RID R+SG+GGQHVNTT Sbjct: 180 GVHRVQRVPITESNGRLQTSAATVAVLPEVEETDIEINEKDLRIDVYRSSGAGGQHVNTT 239 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTGI+V +E+SQH+N+ +AMK+LRARLY E + +RS +RK Q+GS Sbjct: 240 DSAVRITHLPTGIVVQCQNERSQHKNKDQAMKILRARLYKFEDLKKQEQRSNDRKQQVGS 299 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY 335 GDRSERIRTYNF Q R+T+HR N++LYKLE ++QG Sbjct: 300 GDRSERIRTYNFPQNRVTEHRANISLYKLEEIMQGE 335 >gi|260771797|ref|ZP_05880715.1| peptide chain release factor 2 [Vibrio metschnikovii CIP 69.14] gi|260613089|gb|EEX38290.1| peptide chain release factor 2 [Vibrio metschnikovii CIP 69.14] Length = 320 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 112/323 (34%), Positives = 175/323 (54%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ ++ I+ +Q + + L + + D E D E+ + Sbjct: 3 NEPERAQALGKERSSLQAVVETINQLEQGVDDVEGLLELAIEA-QDQETFDEVLPELEEL 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E ++ +LE + + D C ++++AG+GG+EA + L RMY R+A + +K Sbjct: 62 EAKLAQLE----FRRMFSGDHDAAHCYIDLQAGSGGTEAQDWTSMLLRMYLRWADDKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ D G K I G + ++ E+GVHR+ R ++ GR HTS A+ V Sbjct: 118 TEVIEVSEGDVAGLKSATVRIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFV 177 Query: 207 LPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE E VDI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+ Sbjct: 178 YPEIDENIAVDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R Sbjct: 238 NKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 295 VENRNTQAVLDGDLDKFIEASLK 317 >gi|148270549|ref|YP_001245009.1| peptide chain release factor 1 [Thermotoga petrophila RKU-1] gi|147736093|gb|ABQ47433.1| bacterial peptide chain release factor 1 (bRF-1) [Thermotoga petrophila RKU-1] Length = 342 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 147/335 (43%), Positives = 206/335 (61%), Gaps = 16/335 (4%) Query: 22 RMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQ 80 ++ + EYA I I + + + ++ + L Sbjct: 11 LLARPDLTPEQMKNYGMEYAKIEEIENITNRIKETQEFIELLRE--------------EG 56 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 L IEK +EL+ LLL ++ I+EIR G GG EAALF DLFRMY RYA Sbjct: 57 ENELEIEKYEKELDQLYQELLLLLSSEVGDKAIVEIRPGAGGEEAALFARDLFRMYTRYA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + W +EV + D GG +E+V + G+ + +K+ESGVHRVQRVP TE+ GR+HTS Sbjct: 117 ERKGWNLEVAEIHETDLGGIREVVFFVKGKNAYGILKYESGVHRVQRVPVTESGGRIHTS 176 Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLPE E D++I ED++I+T RASG GGQ+VN T+SAVRITH+PTGI+V +E Sbjct: 177 TATVAVLPEIEEKDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITHLPTGIVVSCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQ+QN+ A+++LRARLY +++++ E S RK QIG+G+RSE+IRTYNF Q R+TDH Sbjct: 237 RSQYQNKQTALRILRARLYQLQKEQKEREISQKRKSQIGTGERSEKIRTYNFPQNRVTDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RIN T Y+L+ +L G +D+II+ L+ + Sbjct: 297 RINYTSYRLQEILDGDLDEIISKLIEHDIENNLEE 331 >gi|260771153|ref|ZP_05880080.1| peptide chain release factor 2 [Vibrio furnissii CIP 102972] gi|260613750|gb|EEX38942.1| peptide chain release factor 2 [Vibrio furnissii CIP 102972] gi|315179241|gb|ADT86155.1| peptide chain release factor 2 [Vibrio furnissii NCTC 11218] Length = 320 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 105/323 (32%), Positives = 169/323 (52%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ ++ I DQ + + L + + ++ Sbjct: 3 NEPERAQALGKERSSLEAVVETIDQLDQGVDDVEGLLELAVEAEDQETFDEIGPE----- 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 +E+ ++ + + D C L+++AG+GG+EA + + RMY R+A + +K Sbjct: 58 LEELESKLAKLEFRRMFSGDHDSSDCYLDLQAGSGGTEAQDWTSMMLRMYLRWADAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ D G K I G + ++ E+GVHR+ R ++ GR HTS A+ V Sbjct: 118 TEVIEVSEGDVAGLKSATVRIVGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFV 177 Query: 207 LPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + +DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+ Sbjct: 178 YPEIDDNIAIDINPADLRIDVYRASGAGGQHVNTTESAVRITHLPTNTVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R Sbjct: 238 NKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 295 VENRNTQAVLDGDLDKFIEASLK 317 >gi|70728519|ref|YP_258268.1| peptide chain release factor 2, programmed frameshift [Pseudomonas fluorescens Pf-5] gi|68342818|gb|AAY90424.1| peptide chain release factor 2 (RF-2) [Pseudomonas fluorescens Pf-5] Length = 364 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 172/343 (50%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + + +L E AA++ I+ + + + +DL + Sbjct: 27 DQKHERLTEVNRELEDPSVWNKPEYAQELGRERAALAQIVETLDELNGGLADCRDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D+ A + E ++ + + D + L+I+AG+GG+EA Sbjct: 87 VEEEDEGAVGDVV-----AELARLEENLAKLEFRRMFSHEMDPNNAYLDIQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + ++ S + G K I G F ++ E GVHR+ Sbjct: 142 DWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 202 RKSPFDSGNRRHTSFSAVFVSPEIDDKVEIEINPADLRIDTYRSSGAGGQHVNTTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY+ E ++ + + K IG G Sbjct: 262 ITHVPTNTVVSCQNERSQHANKDTAMKMLRAKLYEQEMQKRNAASQALEDTKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 320 -HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLEASLK 361 >gi|50086456|ref|YP_047966.1| peptide chain release factor 2 [Acinetobacter sp. ADP1] gi|49532432|emb|CAG70144.1| peptide chain release factor 2 [Acinetobacter sp. ADP1] Length = 337 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 169/342 (49%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + + + +E + +++ + ++ ++ + + + + Sbjct: 2 KKERLEEVLRELEDPAIWNDQSRAQAMAKEKGELENVLNVLDNLAEQLEDAKAMLDLAVE 61 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +S + D+ + + ++ + + + D C +EI+AG+GG+EA + Sbjct: 62 ADDESLLVDVE-----SELATAEDELAKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDW 116 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +K E++ SD D G K + G + ++ ESGVHR+ R Sbjct: 117 ASMLLRMYMRWIERHGFKAELMEESDGDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRK 176 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++ R HTS + V V PE + +++I D+R DT RASG+GGQH+N TDSAVR+T Sbjct: 177 SPFDSGNRRHTSFSAVFVSPEIDDNIEIEINPADVRTDTYRASGAGGQHINKTDSAVRLT 236 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSE 304 H PTGI+V +++SQH NR A K LRA+LY++E + + K IG G Sbjct: 237 HAPTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMSKRNEAAQALEDSKSDIGWG---S 293 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + VL G +D I L Sbjct: 294 QIRSYVLDDSRIKDLRTGVENSNTGAVLDGDLDKFIEASLKQ 335 >gi|308071079|ref|YP_003872684.1| peptide chain release factor 2 [Paenibacillus polymyxa E681] gi|305860358|gb|ADM72146.1| Peptide chain release factor 2 (RF-2) [Paenibacillus polymyxa E681] Length = 331 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/328 (33%), Positives = 172/328 (52%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D K A ++ + S + Y+Q + E +D + D E + E Sbjct: 1 MAAPDFWDDNDKAQAVIAEMNAVKSSVDSYEQLRLEYEDAGMMAELA--DEEGDETLAGE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + E LL D + ILE+ G GG+E+ + L RMY R+A Sbjct: 59 IENSIRSLLSKLQEFELQLLLNQPYDKLNAILELHPGAGGTESQDWGQMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLAGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE ++DV+I ED++IDT RASG+GGQH+NTTDSAVRITH+P+GI+V +E+ Sbjct: 179 SCDVVPEIADDVDVEIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPSGIVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR +AM +LR++LY+ + + + R Q +IR+Y F + DH Sbjct: 239 SQIKNREQAMTMLRSKLYERKIEEQRQQLDEIRGEQ-SDIAWGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R ++ + V+ G +D I+ L + Sbjct: 298 RTSVETGNVGAVMDGDLDPFIDGYLRSQ 325 >gi|148988472|ref|ZP_01819919.1| peptide chain release factor 1 [Streptococcus pneumoniae SP6-BS73] gi|147926153|gb|EDK77227.1| peptide chain release factor 1 [Streptococcus pneumoniae SP6-BS73] Length = 294 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 144/293 (49%), Positives = 206/293 (70%), Gaps = 1/293 (0%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I + D+++ ++A+ E+ + E E E ++ LLLPKD +DDK+ ILEIR GG E Sbjct: 1 MIKESGGDADLEEMAKQELKDAKAEKEEYEEKLKILLLPKDPNDDKNIILEIRGAAGGDE 60 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDL MY++YA + W+ EV+ +S N GG+KE+VA +SG+ V+S++K+ESG HR Sbjct: 61 AALFAGDLLTMYQKYAEAQGWRFEVMEASMNGVGGFKEVVAMVSGQSVYSKLKYESGAHR 120 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE+ GRVHTS ATV V+PE E++ DI +D+R+D ASG+GGQ+VN +AV Sbjct: 121 VQRVPVTESQGRVHTSTATVLVMPEVEEVEYDIDPKDLRVDIYHASGAGGQNVNKVATAV 180 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RI H+PT I V E++Q +NR +AMK++RAR+ D + +E+ A RK IG+GDRS Sbjct: 181 RIVHLPTNIKVEMQEERTQQKNREKAMKIIRARVADHFAQIAQDEQDAERKSTIGTGDRS 240 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ERIRTYNF Q R+TDHRI LTL KL+ +L G +D++++ L+ Q + + + Sbjct: 241 ERIRTYNFPQNRVTDHRIGLTLQKLDTILSGKLDEVVDALVLYDQTQKLEELN 293 >gi|311070034|ref|YP_003974957.1| peptide chain release factor 2 [Bacillus atrophaeus 1942] gi|310870551|gb|ADP34026.1| peptide chain release factor 2 [Bacillus atrophaeus 1942] Length = 327 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/331 (33%), Positives = 171/331 (51%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M++ + K + + ++ Y + + ++L ++ + + +L Sbjct: 1 MADPEFWNDQQKAQTVINEANGLKDYVNSYKKLSESHEELQMTHDLLKEEPDEELQLELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 KELKTLTKEFNE-----FELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYIKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE E D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V Sbjct: 176 SFVSCDVMPEFNEEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR RAMK+L+++LY + E R Q IG G +IR+Y F Sbjct: 236 TERSQIKNRDRAMKMLKSKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + ++ V+ G ID I+ L Sbjct: 293 LVKDHRTNTEMGNVQAVMDGDIDVFIDAYLR 323 >gi|332297634|ref|YP_004439556.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168] gi|332180737|gb|AEE16425.1| Peptide chain release factor 2 [Treponema brennaborense DSM 12168] Length = 378 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 116/347 (33%), Positives = 173/347 (49%), Gaps = 15/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ +E E ES + K + I + ++I + D + Sbjct: 24 DVPSIEAAISEKEALSGESGFWENPAKAEKVMTDIKQLKNRIEPWRDLIAAVDDAEALYE 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G + D + + + E L L L D L I AG GG+EA Sbjct: 84 LGMESGDESLEAELKAAYDQAQAEYDRLSI----LNLLSGEVDRNGAFLTIHAGAGGTEA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + + + GG K + ISG + +K E+G+HR+ Sbjct: 140 CDWAQMLCRMYVRWAERRGFKVETVDMLEAE-GGIKSVTLQISGEYAYGYLKSEAGIHRL 198 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS ++V V P I+VDI ED+R+DT RA G+GGQHVN TDSAV Sbjct: 199 VRISPFDSNARRHTSFSSVYVFPVLDDTIEVDIRPEDLRVDTYRAGGAGGQHVNKTDSAV 258 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 R TH+PTGI+V +E+SQ NR AM +LRARLY+ R++ E + A+ K I G+ Sbjct: 259 RFTHLPTGIVVACQTERSQTMNRATAMSMLRARLYEYYREQKEKENAKFASEKKDISWGN 318 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR + ++ V+ G ID I L A Sbjct: 319 ---QIRSYVFQPYTMVKDHRTKHEIGNIQSVMDGAIDPFIEAFLAAQ 362 >gi|225867150|ref|YP_002752528.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus 03BB102] gi|225787101|gb|ACO27318.1| peptide chain release factor 2, programmed frameshift [Bacillus cereus 03BB102] Length = 380 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 175/347 (50%), Gaps = 16/347 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 + + + AE+E +M + D + ++ K D+ + + H + Sbjct: 41 LPTKEKQIAELEEKMMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHEL 100 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + +L I++ LL D D + ILE+ G GG+E+ Sbjct: 101 LKEEYDEELHEELESEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTES 155 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 156 QDWGSMLLRMYTRWAEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRL 215 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAV Sbjct: 216 VRISPFDSSGRRHTSFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAV 275 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PT +V SE+SQ +NR AMK+L+A+LY + + E R Q IG G Sbjct: 276 RITHTPTNTVVTCQSERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG- 334 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + ++ V+ G ID I+ L + Sbjct: 335 --SQIRSYVFHPYSLVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 379 >gi|163789840|ref|ZP_02184276.1| peptide chain release factor 2, programmed frameshift [Carnobacterium sp. AT7] gi|159874780|gb|EDP68848.1| peptide chain release factor 2, programmed frameshift [Carnobacterium sp. AT7] Length = 353 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 187/353 (52%), Gaps = 16/353 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MV + +L+ AE RM+E + K + + K + Y+ E++ Sbjct: 1 MVLGGLFDLENLERDIAEYNDRMTEPTFWEDAQKAQTVINEANELKEKYNQYNDLVTEKE 60 Query: 61 DLHT---VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 DL ++ + N + ++L ++K + LL D D + I+E+ Sbjct: 61 DLELLLEMVKEENDEELAKELNSKISPFLDKLDQ-----YELDLLLSDPYDKNNAIIELH 115 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG+E+ + L RMY R+A R +K+E L+ D+ G K + I G + +K Sbjct: 116 PGAGGTESQDWGSLLLRMYTRWAEKRGFKIETLNYQSGDEAGIKSVTLLIKGMNAYGYLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E GVHR+ R+ +++GR HTS ++ V+PE +D+ I +D++IDT RA+G+GGQH Sbjct: 176 AEKGVHRLVRISPFDSAGRRHTSFVSIDVVPELDDSVDIKINSDDLKIDTYRATGAGGQH 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +NTTDSAVRITHIP+G++V + +++SQ +NR +AM +L+A+LY +E + E +A R Sbjct: 236 INTTDSAVRITHIPSGVVVASQAQRSQLKNRDQAMSMLKAKLYQLEVEEQEKEMAAIRGE 295 Query: 296 Q--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q IG G +IR+Y F + DHR N + V+ G ID I L Sbjct: 296 QLEIGWG---SQIRSYVFHPYSMVKDHRTNYETGNIAQVMDGGIDPFIQAYLR 345 >gi|118602328|ref|YP_903543.1| peptide chain release factor 2 [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567267|gb|ABL02072.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 364 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 113/353 (32%), Positives = 182/353 (51%), Gaps = 15/353 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 +V L+H + + R E+ L M D L +E + ++ I + + Sbjct: 18 IVLLTHISLEKKQARLEEVLLEMENPNIWTNPDQAQVLGQEKSKLTSICQTFKQVNSVLE 77 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q+L + N D + + ++ I+ I +LE + + D S L+I+ Sbjct: 78 DAQELLNMAQTEN-DEDTANDIIDDLDTIQSSIEKLE----FERMFSGDLDVNSAYLDIQ 132 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 +G+GG+EA + + RMY R+ +KV+++ +S + G K G+ F ++ Sbjct: 133 SGSGGTEAQDWAEMVLRMYLRWGEKHNFKVKLMETSAGEVTGIKSATIHFDGKYAFGWLR 192 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E G+HR+ R A+G+ HTS +V V PE +ID+DI D+R+DT RASG+GGQH Sbjct: 193 TEIGIHRLVRKSPFNANGKRHTSFCSVFVSPEVDNDIDIDINPLDLRVDTYRASGAGGQH 252 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANR 293 VN T+SAVRITH+PT I+V +SQ N+ +AMK L+++LY++E ++ E+ ++ Sbjct: 253 VNKTESAVRITHLPTNIIVQCQDGRSQRANKDQAMKQLKSKLYELEIQKRNAEKQSLEDK 312 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y Q RI D R + VL G +D I L A Sbjct: 313 KSNIGWG---HQIRSYVLDQSRIKDLRTGVESTNTNDVLDGNLDQFIEASLKA 362 >gi|226356572|ref|YP_002786312.1| peptide chain release factor 1 [Deinococcus deserti VCD115] gi|259585218|sp|C1CWJ1|RF1_DEIDV RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|226318562|gb|ACO46558.1| putative Peptide chain release factor 1 (RF-1) [Deinococcus deserti VCD115] Length = 366 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 140/358 (39%), Positives = 216/358 (60%), Gaps = 13/358 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +L F +E + + ++ +LT + + P+++ + + + + + Sbjct: 4 RLSELAAEFGMVERALGDPAALADPQAYTRLTRRHRELLPLVTLLREREALESDLRGAQE 63 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ SD ++R+LAQ E+ + +L E+ LLLP D DD K+ ILE+RAG GG+E Sbjct: 64 LL----SDPDMRELAQNEITEATARLEQLGAELEVLLLPTDPDDLKNVILELRAGAGGAE 119 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LFV DL RMY RYA R ++ VL +S++D GG ++VA ISG F K+E GVHR Sbjct: 120 AGLFVMDLLRMYTRYAEDRGLRLNVLEASESDLGGASKVVAEISGEFAFRAFKWERGVHR 179 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTS TVAVLPEA + +V + L ++RID R+ G+GGQ VNTTDSAV Sbjct: 180 VQRVPATESQGRIHTSTVTVAVLPEAEQGEVQLDLSEVRIDVFRSQGAGGQGVNTTDSAV 239 Query: 245 RITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 R + ++V +SQ +NR +A+ VL +RL + ER + + +R Q+GSG Sbjct: 240 RAVYRAGTPDEIMVVCQDGRSQIKNREKALVVLASRLAERERAARDAQEARDRAAQVGSG 299 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +RSE+IRTYN+ Q R+TDHR+ L+ V+ G + +++ L + + + +AS Sbjct: 300 ERSEKIRTYNYPQNRVTDHRLEGDSKNHPLDSVMAGGLGPVVSALARDERERQLLAAS 357 >gi|281185482|sp|Q0TNE1|RF2_CLOP1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|255529900|gb|ABG84933.2| peptide chain release factor 2, programmed frameshift [Clostridium perfringens ATCC 13124] Length = 362 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 111/340 (32%), Positives = 173/340 (50%), Gaps = 9/340 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG- 67 + L+ + AE+EL+M E+ D K E + KI + + D+ + Sbjct: 26 LASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +D E EV A+ KEI L + D IL + G GGS+A Sbjct: 86 MEENDEETAKEIISEVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDAND 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + + +E + D+ G K + + G + +K E G+HR+ R Sbjct: 142 WTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRI Sbjct: 202 ISPFNANGKRQTSFASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ NR AM +L+++L +++ +R E+ + ++ + Sbjct: 262 THIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IR+Y F + DHR N+ + V+ G ID+ I L Sbjct: 321 IRSYVFHPYSMVKDHRTNVETSNVNGVMDGDIDNFIIAYL 360 >gi|78223569|ref|YP_385316.1| peptide chain release factor 2 [Geobacter metallireducens GS-15] gi|78194824|gb|ABB32591.1| bacterial peptide chain release factor 2 (bRF-2) [Geobacter metallireducens GS-15] Length = 364 Score = 225 bits (572), Expect = 1e-56, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 169/346 (48%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 I + E+E ++ D K E I I+ ++ + + L Sbjct: 16 DIDSKREDIQEMEAHIAAPGFWDDNEKAQQLLRERTRIEKILELWDRLTRQADDIRVLIE 75 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + ++ + ++ + + + T D +C I AG GG+E Sbjct: 76 LGEEAGDEGTLDEVRAL-----NDQLEKDVEGAEFQRMLSGTHDKNACYFSINAGAGGTE 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY RY + WK E+ D+ G K T+ G + +K E+G+HR Sbjct: 131 AQDWAEMLLRMYLRYCERKGWKTEITDYQGGDEAGVKSATFTVDGEYAYGYLKAEAGIHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS A+V PE +I+V I D+RIDT R+SG+GGQHVNTTDSA Sbjct: 191 LVRISPFDSNARRHTSFASVFAFPEIEDDIEVTINEADLRIDTYRSSGAGGQHVNTTDSA 250 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRITHIPTG++ + E+SQH N+ AMK+LRA+LY+ E + + + K +IG G Sbjct: 251 VRITHIPTGLVAASQCERSQHMNKATAMKMLRAKLYEKELQEREAKAAEIGGEKKEIGWG 310 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G +++ I L Sbjct: 311 ---SQIRSYVLHPYKMVKDLRTGVETGNPDAVLDGDLEEFIVAFLM 353 >gi|28377601|ref|NP_784493.1| peptide chain release factor 2 [Lactobacillus plantarum WCFS1] gi|38258340|sp|Q88YL5|RF2_LACPL RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|28270434|emb|CAD63336.1| peptide chain release factor 2, C-terminal fragment [Lactobacillus plantarum WCFS1] Length = 357 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 178/354 (50%), Gaps = 16/354 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL--- 62 + L E E RM+E D + + + K + Q E DL Sbjct: 9 RFDLDALNESIQENEARMAEPGFWDDQAAAQKVIDENNVLKGKYDTFKQLADEVGDLAVA 68 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ + + + LL D + ILEI G GG Sbjct: 69 YELLSEEPDAEMQAEFETDFQH-----AEHDLQQYRLNLLLDGPYDRNNAILEIHPGAGG 123 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY R+AA +KVE + D+ G K + ISG + ++ E GV Sbjct: 124 TESQDWGAMLLRMYTRWAASHNFKVETVDYQAGDEAGIKSVTLLISGHNAYGYLRSEKGV 183 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A+V V+PE +DVDI ED++ID RASG+GGQHVN T Sbjct: 184 HRLVRISPFDAAGRRHTSFASVDVMPELDDTVDVDIRPEDLKIDVYRASGAGGQHVNKTS 243 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRITH+PTGI+V + +++SQ QNR A+ +LRA+LY+ E ++ A ER+A + Q IG Sbjct: 244 SAVRITHVPTGIVVASQAQRSQLQNRQTALNMLRAKLYEREEEKKAKERAAIQGEQMDIG 303 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 G +IR+Y F + DHR N + + V+ G +D ++ L A+ Sbjct: 304 WG---SQIRSYVFHPYTMVKDHRTNYESHHGQAVMDGDLDPFMDAYLQWKLAQR 354 >gi|86136665|ref|ZP_01055244.1| peptide chain release factor 2 [Roseobacter sp. MED193] gi|85827539|gb|EAQ47735.1| peptide chain release factor 2 [Roseobacter sp. MED193] Length = 374 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 116/339 (34%), Positives = 171/339 (50%), Gaps = 5/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I Y KQ+ D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDAEAAQKLMRERQNLVDAIDTYKGIKQDLADNIELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E ++ E E+ LL + + LEI +G GG+E+ + L R Sbjct: 91 QEVITDAEEALKALKVSAAEKELEALLDGEADSN--DTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSESAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++D+ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFCSVWVYPVVDDNIEIDVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENK-GDAGWGSQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D + L + A Sbjct: 328 YQMVKDLRTSHETSDTKGVLDGDLDGFMAATLALNVAGK 366 >gi|134095412|ref|YP_001100487.1| peptide chain release factor 2 [Herminiimonas arsenicoxydans] gi|133739315|emb|CAL62364.1| Peptide chain release factor 2 (RF-2) [Herminiimonas arsenicoxydans] Length = 325 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 172/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + L +E ++ I+ + D + ++ DL + + N + I + Sbjct: 1 MEDPKVWDDPKRAQDLGKEKKSLEAIVHTLIKVDAELKDAHDLFEMAREENDEDTIVAIE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ + + + D +C ++I+AG GG+EA + L R Y RY Sbjct: 61 ADTQELLKTV-----EGMEFRRMFSGPMDANNCFIDIQAGAGGTEAQDWASMLLRQYLRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE+L SD + G K + G + ++ E+GVHR+ R +++ HT Sbjct: 116 CERKGFKVEILEQSDGEVAGIKTATLKVEGEYAYGLLRTETGVHRLVRKSPFDSANGRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +++ V PE + ++DI D+RIDT RASG+GGQH+N TDSAVR+TH P+GI+V Sbjct: 176 SFSSLFVYPEVDDSIEIDINPADVRIDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+N+ A +L+A+L+++E + +E+ + K +G G +IR+Y Q R Sbjct: 236 NDRSQHRNKAEAWDMLKAKLFELEMRNRMSEQQKLEDSKTDVGWG---HQIRSYVLDQSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R N + VL G +DD I L Sbjct: 293 IKDLRTNFETGNTKAVLDGDLDDFIAASLKQ 323 >gi|258421538|ref|ZP_05684463.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus A9719] gi|258423403|ref|ZP_05686294.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus A9635] gi|257842464|gb|EEV66888.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus A9719] gi|257846464|gb|EEV70487.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus A9635] Length = 352 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 173/348 (49%), Gaps = 17/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M+E D K + A+ I++ + + Sbjct: 8 DLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWD 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + DL Q + K LL D + ILE+ G GG+E Sbjct: 68 LLQEEFDEEMKEDLEQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RY + +KVE + D+ G K + I G + +K E GVHR Sbjct: 123 SQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 183 LVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTES 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH P+GI+V +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG Sbjct: 243 AIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGW 302 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR N K++ V+ G I I L Sbjct: 303 G---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 347 >gi|330863233|emb|CBX73359.1| peptide chain release factor 1 [Yersinia enterocolitica W22703] Length = 330 Score = 224 bits (571), Expect = 1e-56, Method: Composition-based stats. Identities = 151/321 (47%), Positives = 216/321 (67%), Gaps = 9/321 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAHLGDANVIADQDRFRALSREYAQLTDVTRCFKEWRSVQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDPEMREMAQDELKEAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKE++A +SG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAEARRWKVEIMSASEGEHGGYKEVIAKVSGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E ++ +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAEMPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQQAEASERRN 296 Query: 296 QIGSGDRSERIRTYNFSQGRI 316 +GSGDRS+R RTYNF QGR+ Sbjct: 297 LLGSGDRSDRNRTYNFPQGRV 317 >gi|315634626|ref|ZP_07889910.1| peptide chain release factor RF2 [Aggregatibacter segnis ATCC 33393] gi|315476574|gb|EFU67322.1| peptide chain release factor RF2 [Aggregatibacter segnis ATCC 33393] Length = 325 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + L +E ++ +++ I +Q ++ L + + + + Sbjct: 1 MEQPDVWNDADKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELAVEAGDEDTFNEAV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 A E+ + ++ + + D C ++++AG+GG+EA + L RMY R+ Sbjct: 61 -----AELDELEQQLAKLEFRRMFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K E++ SD D G K +SG F ++ E+G+HR+ R +++ R HT Sbjct: 116 AESKGFKTELMEVSDGDVAGVKSATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V PE + D+RID RASG+GGQHVN T+SAVRITH+P+GI+V Sbjct: 176 SFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G +IR+Y R Sbjct: 236 NDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG---SQIRSYVLDDSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R + + VL G +D I L A Sbjct: 293 IKDLRTGVENRNTQAVLDGDLDRFIEASLKA 323 >gi|284931146|gb|ADC31084.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str. F] Length = 360 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 145/349 (41%), Positives = 220/349 (63%), Gaps = 4/349 (1%) Query: 7 KQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ ++ + + + +E ++ +YD+ + + Sbjct: 9 ETLVAIRATAQKLNKELESLTNDFKRIHAINKELKQKKQLLEVFELYDKLVVSGLEAEKI 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I D N+ E +LA +++ A +++I +LE ++ LLLP D +DDK I+E+R GG E+ Sbjct: 69 IND-NTMKEFHELAILDLDAAKEQIPDLEEKLKVLLLPADPNDDKEVIVEMRPAAGGDES 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ++FVG++F +Y+ Y + WK+ V+ GY I I+G V+S+MKFESGVHRV Sbjct: 128 SIFVGNMFDLYKEYCSKHNWKINVIEMLPTSV-GYSFISFEINGEDVYSKMKFESGVHRV 186 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATEA GRVHTS T+AVLP+ +++++I D+RIDT RASG+GGQHVN T+SAVR Sbjct: 187 QRVPATEAKGRVHTSTITIAVLPQQDDVEIEINPADLRIDTYRASGAGGQHVNRTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+ KSQ NR AMK+LR++L++ K + SA RK Q+GSGDR+E Sbjct: 247 ITHIPTGIVAACQEGKSQIANRETAMKMLRSKLWEAAEKEKNDALSALRKNQVGSGDRAE 306 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IRTYN+ Q R+TDHRIN++L L+ + G ID++I+ L + Q + + Sbjct: 307 KIRTYNYPQNRVTDHRINMSLNSLDRFMMGEIDEMIDALRSKEQEEKMK 355 >gi|116051698|ref|YP_789463.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa UCBPP-PA14] gi|115586919|gb|ABJ12934.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa UCBPP-PA14] Length = 332 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 170/336 (50%), Gaps = 15/336 (4%) Query: 18 EIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E+ + + + L E A ++ ++ + + +DL + + + + Sbjct: 3 EVNRELEDPNVWNNPEYAQNLGRERAQLAQVVETLDDLTSGLADSRDLLDMAVEEDDEGA 62 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + D+A E + + + + D + L+I+AG+GG+EA + L R Sbjct: 63 VDDVANEVERLREILEK-----LEFRRMFSGEMDPNNAYLDIQAGSGGTEAQDWANMLLR 117 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + ++ S+ + G K I G F ++ E GVHR+ R ++ Sbjct: 118 MYLRWADKHGFDATIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSG 177 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVRITH+PT Sbjct: 178 NRRHTSFTAVFVSPEIDDNIEIEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNT 237 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYN 310 +V +E+SQH N+ AMK+LRA+LY++E ++ A++ + K IG G +IR+Y Sbjct: 238 VVACQNERSQHANKDTAMKMLRAKLYELEMQKRTAASQALEDSKSDIGWG---HQIRSYV 294 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D+ + L Sbjct: 295 LDQSRIKDLRTGIERSDCDKVLDGDLDEYLEASLKQ 330 >gi|294788774|ref|ZP_06754015.1| peptide chain release factor 2 [Simonsiella muelleri ATCC 29453] gi|294483256|gb|EFG30942.1| peptide chain release factor 2 [Simonsiella muelleri ATCC 29453] Length = 367 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + ++ +E + I+ + + + ++L ++ + Sbjct: 32 KKERLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTMDNLENGIADNRELIDMVVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N ++A ++ + + + D +C ++I AG GG+EA + Sbjct: 92 END-----TDGFAAIIADVADLETQMAALEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+++L D + G + G+ + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKLDILEEDDGEIAGINRATIRVEGKYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ + HTS A+V V PE + ++DI D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDANNKRHTSFASVFVYPEVDDSIEIDINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++LR++L+++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLRSKLFELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|296330264|ref|ZP_06872745.1| peptide chain release factor 2 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305676131|ref|YP_003867803.1| peptide chain release factor 2 [Bacillus subtilis subsp. spizizenii str. W23] gi|296152532|gb|EFG93400.1| peptide chain release factor 2 [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305414375|gb|ADM39494.1| peptide chain release factor 2 [Bacillus subtilis subsp. spizizenii str. W23] Length = 327 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 112/328 (34%), Positives = 167/328 (50%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + K + I ++ Y + ++L + + ++E Sbjct: 1 MADPEFWNDQQKAQTVINEANGIKDYVNSYKKLNDSHEELQMTHDLLKEEPDSDLQLELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E+ L + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 KELKSLTKEFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V +E+ Sbjct: 179 SCEVMPEFNDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDIDTFIDAYLR 323 >gi|221124304|ref|XP_002161242.1| PREDICTED: hypothetical protein [Hydra magnipapillata] Length = 281 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 144/277 (51%), Positives = 191/277 (68%), Gaps = 10/277 (3%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + +LE E+ +LLPKD DD + +EIRAGTGG E+ALF DL RMY RY + + E+ Sbjct: 1 MAQLEAELQRMLLPKDPDDARPAFVEIRAGTGGDESALFAVDLARMYTRYCDAKGLRTEI 60 Query: 150 LSSSDNDDGGYKEIVATISGRG--------VFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +S+S+++ GGYKE+V I G + +KFESG HRVQRVPATE GR+HTSA Sbjct: 61 MSASESELGGYKEVVLRIEGSTTTSAGSCGAYGMLKFESGGHRVQRVPATETQGRIHTSA 120 Query: 202 ATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 T+AVL E E + I D+RIDT RASG+GGQH+N TDSAVRITHIPTGI+ Sbjct: 121 CTIAVLAEQDEAEAIKINPSDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVAECQDG 180 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQH N+ +A+KVL AR+++ +R A + +A RK +GSGDRS+RIRTYN+ QGR+TDH Sbjct: 181 RSQHSNKAQALKVLTARIHEKDRSERAAKDAAERKSLVGSGDRSDRIRTYNYPQGRLTDH 240 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 RINLTLYKL+ ++G +DD+I L A+ + + Sbjct: 241 RINLTLYKLDRAMEGDLDDVIEALQAYEAAQQLAALE 277 >gi|256750898|ref|ZP_05491782.1| peptide chain release factor 2 [Thermoanaerobacter ethanolicus CCSD1] gi|256750233|gb|EEU63253.1| peptide chain release factor 2 [Thermoanaerobacter ethanolicus CCSD1] Length = 330 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 172/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K L + + ++ + + K ++ L + + +S ++ Sbjct: 1 MADPNFWNDIKKSQELAKRQKELKELLEEYNSLVTKWEDLSTLIELGLEEGDESITDEVD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K + L D + IL I AG+GG+EA + L RMY R+ Sbjct: 61 KEYKELKKKLED-----LKIKTLLNGLYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++VE L ++ G K + I G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SAVRITH+PTGI+V Sbjct: 176 SFALVEVLPELKNDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 SERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + ++ V+ G ID IN L Sbjct: 295 KDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 324 >gi|294660260|ref|NP_852919.2| peptide chain release factor 1 [Mycoplasma gallisepticum str. R(low)] gi|46576715|sp|Q7NBX3|RF1_MYCGA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|284811917|gb|AAP56487.2| Peptide chain release factor 1 [Mycoplasma gallisepticum str. R(low)] gi|284930381|gb|ADC30320.1| Peptide chain release factor 1 [Mycoplasma gallisepticum str. R(high)] Length = 360 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 145/349 (41%), Positives = 220/349 (63%), Gaps = 4/349 (1%) Query: 7 KQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ ++ + + + +E ++ +YD+ + + Sbjct: 9 ETLVAIRATAQKLNKELESLTNDFKRIHAINKELKQKKQLLEVFELYDKLVVSGLEAEKI 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I D N+ E +LA +++ A +++I +LE ++ LLLP D +DDK I+E+R GG E+ Sbjct: 69 IND-NAMKEFHELAILDLDAAKEQIPDLEEKLKVLLLPADPNDDKEVIVEMRPAAGGDES 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ++FVG++F +Y+ Y + WK+ V+ GY I I+G V+S+MKFESGVHRV Sbjct: 128 SIFVGNMFDLYKEYCSKHNWKINVIEMLPTSV-GYSFISFEINGEDVYSKMKFESGVHRV 186 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVPATEA GRVHTS T+AVLP+ +++++I D+RIDT RASG+GGQHVN T+SAVR Sbjct: 187 QRVPATEAKGRVHTSTITIAVLPQQDDVEIEINPADLRIDTYRASGAGGQHVNRTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+ KSQ NR AMK+LR++L++ K + SA RK Q+GSGDR+E Sbjct: 247 ITHIPTGIVAACQEGKSQIANRETAMKMLRSKLWEAAEKEKNDALSALRKNQVGSGDRAE 306 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IRTYN+ Q R+TDHRIN++L L+ + G ID++I+ L + Q + + Sbjct: 307 KIRTYNYPQNRVTDHRINMSLNSLDRFMMGEIDEMIDALRSKEQEEKMK 355 >gi|269469023|gb|EEZ80587.1| protein chain release factor B [uncultured SUP05 cluster bacterium] Length = 364 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 179/352 (50%), Gaps = 15/352 (4%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQE 58 +H + + + R E+ L M D L +E + + I + + ++ Sbjct: 19 ALSAHLDLEEKQGRLEEVLLEMENPDIWSNPDEAQALGQEKSKLELICQTFARANSILED 78 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++L + N D + + ++ +E I +LE + + D S L+I++ Sbjct: 79 AKELLEMAQSEN-DKDTVNSVIGDLNTVELSIEKLE----FERMFSGELDANSAYLDIQS 133 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G+GG+EA + + RMY R+ K+KV+++ S + G K +G F ++ Sbjct: 134 GSGGTEAQDWAEMILRMYLRWGEKHKFKVKLMEVSAGEVAGIKSATIHFNGEYAFGWLRS 193 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHV 237 E G+HR+ R A+G+ HTS ++V V PE + +++I D+RIDT RASG+GGQHV Sbjct: 194 EIGIHRLVRKSPFNANGKRHTSFSSVFVSPEIDDNIEININPSDLRIDTYRASGAGGQHV 253 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRK 294 N T+SAVRITH+PT +V +SQH N+ +AMK L+++LY++E + E+ + K Sbjct: 254 NKTESAVRITHLPTNTVVQCQDGRSQHANKDQAMKQLKSKLYELEMQERNKEKQDLEDTK 313 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IG G +IR+Y Q RI D R + + VL G +D I L A Sbjct: 314 SDIGWG---HQIRSYVLDQSRIKDLRTGVESTNTQDVLDGNLDKFIEASLKA 362 >gi|282908140|ref|ZP_06315971.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus subsp. aureus WW2703/97] gi|282910399|ref|ZP_06318203.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus subsp. aureus WBG10049] gi|282325791|gb|EFB56099.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus subsp. aureus WBG10049] gi|282327805|gb|EFB58087.1| LOW QUALITY PROTEIN: peptide chain release factor 2 [Staphylococcus aureus subsp. aureus WW2703/97] Length = 352 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 172/348 (49%), Gaps = 17/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M+E D K + A+ I++ + + Sbjct: 8 DLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWD 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + DL Q + K LL D + ILE+ G GG+E Sbjct: 68 LLQEEFDGEMKEDLEQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTE 122 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RY + +KVE + D+ G K + I G + +K E GVHR Sbjct: 123 SQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 182 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 183 LVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTES 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH P+GI+V +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG Sbjct: 243 AIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGW 302 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR N K++ V+ G I I L Sbjct: 303 G---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 347 >gi|295401151|ref|ZP_06811124.1| peptide chain release factor 2 [Geobacillus thermoglucosidasius C56-YS93] gi|294976744|gb|EFG52349.1| peptide chain release factor 2 [Geobacillus thermoglucosidasius C56-YS93] Length = 327 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+ D + ++ + +++ + + + +I + + ++L Sbjct: 1 MAAPDFWDDQKAAQTVINEANALKDLVGEFQSLEERFENLEVTYELIKEEPDEDLQQELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 TEAKRLTKDFSE-----FELQLLLNEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L ++ G K + I G + +K E GVHR+ R+ +ASGR HT Sbjct: 116 AEKKGFKVETLDYLPGEEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDASGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I E+IRIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 176 SFVSCEVIPEMDDDIEIEIRPEEIRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +A+ +L+A+LY + + E + R Q IG G+ +IR+Y F Sbjct: 236 SERSQIKNREKALNMLKAKLYQKKLEEQQAELAEIRGEQKEIGWGN---QIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N+ + ++ V+ G ID I+ L Sbjct: 293 LVKDHRTNVEVGNVQAVMDGEIDIFIDAYLR 323 >gi|291522080|emb|CBK80373.1| bacterial peptide chain release factor 2 (bRF-2) [Coprococcus catus GD/7] Length = 336 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 103/332 (31%), Positives = 170/332 (51%), Gaps = 10/332 (3%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLA 79 M E D K + + + Y + + +D+ T++ +D+ + Sbjct: 1 MMEEPGFWDNADKANNSMKELKNLKDTVEEYHRLETAWEDVETLLEMGYEENDASLIPEV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + EK L L + D + I+ + AG GG+EA +V LFRMY R+ Sbjct: 61 QEAMADFEKRFEHL----RIKTLLSEEYDGDNAIVTLHAGAGGTEACDWVSMLFRMYTRW 116 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + VL D ++ G K + I+G + MK E G+HR+ R+ A+G+ T Sbjct: 117 AEKHGFTTTVLDYLDGEEAGIKSVTVEIAGENAYGYMKSEKGIHRLVRISPFNAAGKRQT 176 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+ V+P+ E D++I +D+RIDT R+SG+GGQH+N T SA+RITH+PT I+V Sbjct: 177 SFASCDVMPDIEEDLDIEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTNIVVQCQ 236 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-I 316 +E+SQH N+ +AM++L+A+LY ++++ + S R ++ +IR+Y + + Sbjct: 237 NERSQHMNKDKAMQMLKAKLYLLKQQENQEKLSGIR-GEVKDNAWGSQIRSYVMQPYKLV 295 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR ++ V+ G ID IN L + Sbjct: 296 KDHRTGAESSNVDAVMDGDIDLFINAYLKWNN 327 >gi|304407676|ref|ZP_07389327.1| peptide chain release factor 2 [Paenibacillus curdlanolyticus YK9] gi|304343159|gb|EFM09002.1| peptide chain release factor 2 [Paenibacillus curdlanolyticus YK9] Length = 329 Score = 224 bits (570), Expect = 2e-56, Method: Composition-based stats. Identities = 107/330 (32%), Positives = 175/330 (53%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSDSEIRDLAQ 80 M+ D K + ++ + S + Y++ + DL T++ + D Sbjct: 1 MTAPDFWDDNDKAQAVISEMNAVKSTVEKYEKLAGDHDDLSTMLEMVEEEGDDSFESELT 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 V ++ K I + E LL D + ILE+ G GG+E+ + L+RMY R+A Sbjct: 61 EGVESLVKRISDFELT----LLLNQPYDKLNAILELHPGAGGTESQDWGQMLYRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 +KVE+L D+ G K + +I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 117 EKSGFKVELLDYLPGDEAGIKSVTISIKGYNAYGYLKAEKGVHRLVRISPFDSSGRRHTS 176 Query: 201 AATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 + V+P +I+++I ED+++DT RASG+GGQHVN T+SA+RITHIP+GI+V + Sbjct: 177 FVSCDVMPEIEDDIEIEIRTEDLKVDTYRASGAGGQHVNKTESAIRITHIPSGIIVACQT 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ QNR +AMK+LR++LY+ + + + R Q +IR+Y F + Sbjct: 237 QRSQIQNREQAMKMLRSKLYERKIEEQQKHLAEIRGEQ-SDIAWGSQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR ++ + V+ G +D I+ L + Sbjct: 296 DHRTSVETGNVGAVMDGDLDAFIDGYLRSQ 325 >gi|325295572|ref|YP_004282086.1| hypothetical protein Dester_1396 [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066020|gb|ADY74027.1| hypothetical protein Dester_1396 [Desulfurobacterium thermolithotrophum DSM 11699] Length = 374 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 116/346 (33%), Positives = 183/346 (52%), Gaps = 6/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I +K + EIE MS + + K + I S+++ + +Q+ +D+ T Sbjct: 27 DIEKMKKKLTEIEEEMSSANFWNDQKKAQSISMERNRIESELNTFSSIEQQLEDIET--L 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ E + E + K I N + + D + I+ I AG GG+E+ Sbjct: 85 LEIAEEESEESLLDEAESFLKNIERELNSLEVKTVLSGEFDKNNAIVTIHAGAGGTESCD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + ++ E+L +N++ G K I G + ++ E G HR+ R Sbjct: 145 WAEMLMRMYLRWAERKGFETEILDLQENEEAGIKSATILIKGAYAYGLLRAEHGTHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS V V+P +ID++I ED+RIDT RASG+GGQHVN TDSAVRI Sbjct: 205 ISPFDSNARRHTSFCGVIVVPEIDEDIDIEIKDEDLRIDTYRASGAGGQHVNKTDSAVRI 264 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V SE+SQ QNR RAMK+L+ARLY++ER++ + + R + + + Sbjct: 265 THLPTGIVVTCQSERSQIQNRQRAMKILKARLYELERQKREEKIAEAR-GEHKTIAWGNQ 323 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F + + DHR + + V+ G ID I L + Sbjct: 324 IRSYVFHPYQMVKDHRTGIETSNINAVMDGEIDQFIEGFLKQKARE 369 >gi|300174043|ref|YP_003773209.1| peptide chain release factor 2 [Leuconostoc gasicomitatum LMG 18811] gi|299888422|emb|CBL92390.1| Peptide chain release factor 2 [Leuconostoc gasicomitatum LMG 18811] Length = 372 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 183/343 (53%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E RM+ES D +K + + + ++ + + +++ +I Sbjct: 25 DLEALTEEIADFENRMTESGFWDDNVKAQKIIEENNVLKNRRDSFLNLTSQAEEIDLLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D ++ +I K +++E LL + D + ILE+ G+GG+E+ Sbjct: 85 MLSEDVTDSEMMSELEESIVKAQKDIETYNLEQLLTEPYDA-NNAILEVHPGSGGTESTD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A ++V+VL D+ G I+G F ++ E GVHR R Sbjct: 144 WGANLYRMYTRWAQQHGFQVDVLDYHAGDEAGIDSATIKITGHNAFGFLRSEKGVHRFVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS +V V+PE ID++I +D+++D R+ G+GGQ+VN + VR+ Sbjct: 204 ISPFDSAGRRHTSFVSVDVMPELDDTIDIEIRDDDVKMDVFRSGGAGGQNVNKVSTGVRL 263 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V+S+ E++Q+ NR AM++L+ +LY +E ++ ER+A ++ +G + Sbjct: 264 THEPTGIVVSSTVERTQYGNRDYAMRLLKGKLYQLELEKQEAERAALTGDKLENG-WGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + DHR + + + VL G +D IN L Sbjct: 323 IRSYVLHPYQMVKDHRTDYETNQPQQVLDGDLDPFINAYLQWQ 365 >gi|325129251|gb|EGC52090.1| peptide chain release factor 2 [Neisseria meningitidis OX99.30304] gi|325133309|gb|EGC55975.1| peptide chain release factor 2 [Neisseria meningitidis M13399] gi|325205086|gb|ADZ00540.1| peptide chain release factor 2 [Neisseria meningitidis M01-240355] Length = 341 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 6 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 65 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 66 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 121 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 180 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 181 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 240 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 241 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 297 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 298 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 339 >gi|121535512|ref|ZP_01667321.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1] gi|121305931|gb|EAX46864.1| peptide chain release factor 2 [Thermosinus carboxydivorans Nor1] Length = 332 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 116/331 (35%), Positives = 180/331 (54%), Gaps = 10/331 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRD 77 E +MS D + + ++ + IS Y Q + D+ + +G D + D Sbjct: 2 EHKMSAPDFWDDPAEAQKIAQEVTALKDSISQYQQLRSRHSDVAALWQLGMDEGDDSVYD 61 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 E+ A+ K++ +LE + D + IL + AG GG+EA + L RMY Sbjct: 62 EVAAELRALAKDLEQLELTVL----LTGEYDANNAILTLHAGAGGTEAQDWAQMLLRMYM 117 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+A R +KVE+L + ++ G K T++GR + +K E GVHR+ R+ +ASGR Sbjct: 118 RWAEKRGYKVELLDALAGEEAGIKSATITVAGRNAYGYLKAEKGVHRLVRISPFDASGRR 177 Query: 198 HTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS A V V+PE + + D++IDT R+ G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 178 HTSFAAVDVMPEIDDNTEIVINPADLKIDTFRSGGAGGQHVNKTESAVRITHLPTGIVVQ 237 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG- 314 SE+SQ QNR +AM++LRA+L+++ER++ ++S + + +IR+Y F Sbjct: 238 CQSERSQIQNREQAMRLLRAKLFELERQKREQKKSELA-GDYQAIEWGSQIRSYVFHPYN 296 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N ++ V+ G ID I L Sbjct: 297 LVKDHRTNAETGNVQAVMDGEIDLFIEAYLR 327 >gi|238063024|ref|ZP_04607733.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149] gi|237884835|gb|EEP73663.1| peptide chain release factor 2 [Micromonospora sp. ATCC 39149] Length = 373 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 164/353 (46%), Gaps = 10/353 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + K R E + S D K + + +S + +I + D Sbjct: 24 LDLDRLHEDKARLEE---QASAPDLWDDQAKAQQVTSQLSYVNGEIDKLGSLRSRLDDAR 80 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ + LA++E ++ L D + ++ IRAG GG Sbjct: 81 VLLELAEAEDDPGVLAEVETEIGALTKSI--QDMEVRTLLSGEYDSREALVAIRAGAGGV 138 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA F L RMY R+A + EV +S ++ G K + + + ESG H Sbjct: 139 DAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFAVKVPYAYGTLSVESGTH 198 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP +DIP ++R+D R+SG GGQ VNTTDS Sbjct: 199 RLVRISPFDNQGRRQTSFAGVEVLPVTEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDS 258 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+THIPTGI+V +EKSQ QN+ A++VL+ARL + +R+ + + + GS Sbjct: 259 AVRLTHIPTGIVVTCQNEKSQLQNKASALRVLQARLLERKRQEEQAKLNGLKTDAAGS-- 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +++R+Y + + D R V G +D I + + + + Sbjct: 317 WGDQMRSYVLHPYQMVKDLRTEQETGNPSAVFDGELDSFIEAGIRWRKQRQLA 369 >gi|240143320|ref|ZP_04741921.1| peptide chain release factor 2 [Roseburia intestinalis L1-82] gi|257204691|gb|EEV02976.1| peptide chain release factor 2 [Roseburia intestinalis L1-82] gi|291536819|emb|CBL09931.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia intestinalis M50/1] gi|291539122|emb|CBL12233.1| bacterial peptide chain release factor 2 (bRF-2) [Roseburia intestinalis XB6B4] Length = 338 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 109/331 (32%), Positives = 176/331 (53%), Gaps = 14/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 M D + ++ + + ++ Y K E +D+ T+I +D+ + Q Sbjct: 1 MEAPNFWDDPVVSQKKMKELKSMKDDVATYASLKTEFEDIETLIEMGYEENDASLIPEIQ 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + K + L D I+ + AG GG+E+ + L+RMY R+A Sbjct: 61 EMLDEFTKTYEGI----RIKTLLSGEYDSDGAIVSLHAGAGGTESCDWAAMLYRMYTRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + + + VEVL S D ++ G K I I+G + MK E GVHR+ R+ A+G+ TS Sbjct: 117 SDKGFSVEVLDSLDGEEAGIKSITFQINGENAYGYMKSEKGVHRLVRISPFNAAGKRQTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 + V+P+ E DV+I +D+RIDT R+SG+GGQH+N T SA+RITHIPTGI+V + Sbjct: 177 FVSCDVMPDIEEDLDVEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQCQN 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-R 315 E+SQ QN+ +AM++L+A+LY ++++ A + + R +IG G+ +IR+Y Sbjct: 237 ERSQFQNKDKAMQMLKAKLYLLKQQENAEKAADIRGEVTEIGWGN---QIRSYVMQPYTM 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR + ++ V+ G ID IN L Sbjct: 294 VKDHRTGVETGNVDSVMDGKIDIFINGYLKW 324 >gi|332638053|ref|ZP_08416916.1| peptide chain release factor 2 [Weissella cibaria KACC 11862] Length = 332 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 100/335 (29%), Positives = 165/335 (49%), Gaps = 12/335 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQK---KQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + + + A + + + Y + + ++ + + ++ Sbjct: 1 MAQPDFWNDNVAAQKVIDANNILKGRRDDYLNLTAGVENVETALELLAEMPDEDMQAEME 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 L + D + ILEI G+GG+E+A + +L RMY R+ Sbjct: 61 ADLEKLAADL-----ESYRLAQLLNEPYDKNNAILEIHPGSGGTESADWGANLQRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +KVE++ D G I+G + ++ E GVHR R+ +++GR HT Sbjct: 116 AERHGFKVEIMDYHPGDVAGIDSATLMITGHNAYGYLRSERGVHRFVRISPFDSAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S ++ V+PE +DVDI D+++D RASG+GGQH+N T SAVR+THIPTGI+V + Sbjct: 176 SFVSIDVMPELDDSVDVDINPADVKMDVYRASGAGGQHINKTSSAVRLTHIPTGIVVASQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-I 316 ++SQ QN+ A +LRA+LY +E + ER++ Q+ +G +IR+Y F R + Sbjct: 236 QQRSQFQNKDTAYAMLRAKLYQLEMDKKEKERASIAGEQLENG-WGSQIRSYVFQPYRMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR N + V+ G +D IN L A+ Sbjct: 295 KDHRTNYESGNPQGVMDGDLDPFINAYLRWKLAEQ 329 >gi|227872846|ref|ZP_03991157.1| peptide chain release factor RF2 [Oribacterium sinus F0268] gi|227841316|gb|EEJ51635.1| peptide chain release factor RF2 [Oribacterium sinus F0268] Length = 378 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 169/347 (48%), Gaps = 12/347 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHT 64 + + R E++ M E K + E + + + ++ + L Sbjct: 26 DLDTKRKRIIELDRMMEEPDFWGDPEKANKLSTEARHLKDELEGFTALKGNYEDIEALIQ 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + N DS I ++ ++ E+ + LL D + IL + AG GG+E Sbjct: 86 MGKEENDDSVIPEIRELLDSFSERLDQMNTT-----LLLSGEYDSMNVILRLNAGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + G L+RMY R+A + V++L D D+ G K + + G + ++ ESG+HR Sbjct: 141 ANDWAGILYRMYTRWAERHGFTVKILDYLDGDEAGIKSVTMEVVGEYAYGYLRSESGIHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A G+ TS + V+P+ +ID++I EDI+++ RASG+GGQH+N T SA Sbjct: 201 LVRISPFNAQGKRQTSFVSCDVMPDIETDIDIEIREEDIKMEVFRASGAGGQHINKTSSA 260 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ HIPTG + E+SQ QN+ +AM++L+ +LY E++ + + R ++ Sbjct: 261 VRLIHIPTGFVAACQEERSQLQNKNKAMQMLKTKLYLKEKEEQEAKLAGIR-GEVKDNGW 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y R + D R + VL G ID I+ L Q Sbjct: 320 GSQIRSYVLQPYRMVKDLRTGEESGNTDAVLDGDIDRFISAYLKWMQ 366 >gi|221311479|ref|ZP_03593326.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. 168] gi|221315806|ref|ZP_03597611.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221320721|ref|ZP_03602015.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. JH642] gi|221325006|ref|ZP_03606300.1| peptide chain release factor 2 [Bacillus subtilis subsp. subtilis str. SMY] gi|321313075|ref|YP_004205362.1| peptide chain release factor 2 [Bacillus subtilis BSn5] gi|320019349|gb|ADV94335.1| peptide chain release factor 2 [Bacillus subtilis BSn5] Length = 327 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + K + + ++ Y + + ++L + + ++E Sbjct: 1 MADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQLELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E+ L + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 KELKSLTKEFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V +E+ Sbjct: 179 SCEVMPEFNDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDIDTFIDAYLR 323 >gi|325201177|gb|ADY96632.1| peptide chain release factor 2 [Neisseria meningitidis H44/76] Length = 341 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 6 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 65 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 66 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +++E+L D + G + G + ++ E+GVHR+ R Sbjct: 121 AGMLFRMYSRYAERKGFRIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 180 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 181 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 240 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 241 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 297 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 298 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 339 >gi|312194810|ref|YP_004014871.1| peptide chain release factor 1 [Frankia sp. EuI1c] gi|311226146|gb|ADP79001.1| peptide chain release factor 1 [Frankia sp. EuI1c] Length = 360 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 144/335 (42%), Positives = 203/335 (60%), Gaps = 19/335 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + + A IE R+++ + L YA ++PI+ +Q + + + Sbjct: 5 LERMLDEHAVIEKRLADPAVHNDVGEARALGRRYAELAPIVELAREIEQANGDLETAREL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D R AI+ + L LL P D DD + ILE++AG GG E+ Sbjct: 65 AVE---DPSFRAEVTDLETAIQDRRQRL----RTLLAPTDPDDGRDAILEVKAGAGGEES 117 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG--------RGVFSRMK 177 ALF GDL RMY RYA R WK E+L ++ +D GGY+++ + GV+ R++ Sbjct: 118 ALFAGDLLRMYLRYAERRGWKTEILEANPSDLGGYRDVSVAVKYRGQVPPGQPGVYGRLR 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FE GVHRVQRVP TE++GR+HTSAA V V+PEA E+DV I D+RID R+SG GGQ V Sbjct: 178 FEGGVHRVQRVPVTESAGRIHTSAAGVLVMPEAEEVDVQIDPNDLRIDVFRSSGPGGQSV 237 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+PTG++V +EKSQ QN+ A+++LRARL V R++ +E+SA R Q Sbjct: 238 NTTDSAVRITHVPTGVVVSCQNEKSQLQNKESALRILRARLLTVAREKAESEKSAARASQ 297 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYV 331 + + DRS+++RTYNF + RI DHR+N + LE V Sbjct: 298 VRTMDRSDKVRTYNFPENRIADHRVNYKAHNLEAV 332 >gi|293375591|ref|ZP_06621865.1| peptide chain release factor 2 [Turicibacter sanguinis PC909] gi|325836763|ref|ZP_08166230.1| peptide chain release factor 2 [Turicibacter sp. HGF1] gi|292645808|gb|EFF63844.1| peptide chain release factor 2 [Turicibacter sanguinis PC909] gi|325491141|gb|EGC93430.1| peptide chain release factor 2 [Turicibacter sp. HGF1] Length = 365 Score = 223 bits (569), Expect = 3e-56, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 184/344 (53%), Gaps = 14/344 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL----HT 64 + + E + +M + D K E A + I K++ + + E ++L Sbjct: 26 VEQKEAEIKEYDDQMQVAGFWDDQRKAQEVINAANAIKDKVNTFYSLEGEVEELAVAFEL 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + ++D + +QIE ++ ELE +L D + ILE+ G GG+E Sbjct: 86 ILEEPDADLQAELESQIEEVSEHLNKFELE------ILLSGPYDANNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L+RMY RYA + +K+EVL ++ G K + I G F K E GVHR Sbjct: 140 SQDWAEMLYRMYTRYAERKGFKIEVLDYLVGEEAGIKSVTIKIKGTNAFGYFKAERGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++ GR HTS + V+PE + +ID++I ED++IDT RASG+GGQH+NTTDSA Sbjct: 200 LVRISPFDSGGRRHTSFCSCDVMPEFSGDIDIEIRAEDLKIDTYRASGAGGQHINTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPT +V +++SQ +NR AM++L+++LY + + E + R ++ Sbjct: 260 VRITHIPTNTIVTCQNQRSQIKNREAAMEMLKSKLYQRKLEEQEAELAKIR-GEVKEIGW 318 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + + ++ V+ G +D I+ L Sbjct: 319 GSQIRSYVFHPYSLVKDHRTSYEVGNVQSVMDGDLDGFIDAYLR 362 >gi|326790220|ref|YP_004308041.1| peptide chain release factor 2 [Clostridium lentocellum DSM 5427] gi|326540984|gb|ADZ82843.1| peptide chain release factor 2 [Clostridium lentocellum DSM 5427] Length = 369 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 122/349 (34%), Positives = 183/349 (52%), Gaps = 10/349 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + I K + +E+E ++ + + + +I YD+ +D+ Sbjct: 21 MGNRLDIEGCKVKASELEEMSMDNAFWNDIERAQSVLQQLKNYKDRIEKYDKLCGSFEDI 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I N D +I + + A E E + L D + ILE+ G GG Sbjct: 81 LVLIEMANEDEDIGLAEEAKACAKTFEEDYSE--MLTATLLDQEYDRNNAILELHPGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V LFRMY R+A + +KVEVL D D+ G K + ISG + +K E G+ Sbjct: 139 TEACDWVAMLFRMYTRWADRKGFKVEVLDYLDGDEAGIKSVTIQISGENAYGYLKSEKGI 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ ++SGR HTS A+ V+PE + ++DI ED+RIDT R++G+GGQHVNTTD Sbjct: 199 HRLVRISPFDSSGRRHTSFASCDVIPEITDEIEIDIRPEDLRIDTYRSTGAGGQHVNTTD 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIG 298 SAVRITH+PT I+V +E+SQ QNR RAM++L+A+LY+ E++ + R K I Sbjct: 259 SAVRITHLPTNIVVQCQNERSQIQNRERAMQMLKAKLYEKEQEERMDRIDGIRGEKKDIA 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR + V+ G ID +N L Sbjct: 319 WG---SQIRSYVFHPYNMVKDHRTSEETGNTSAVMDGDIDRFMNAYLGW 364 >gi|325127235|gb|EGC50173.1| peptide chain release factor 2 [Neisseria meningitidis N1568] gi|325137398|gb|EGC59986.1| peptide chain release factor 2 [Neisseria meningitidis ES14902] gi|325141306|gb|EGC63796.1| peptide chain release factor 2 [Neisseria meningitidis 961-5945] gi|325199214|gb|ADY94670.1| peptide chain release factor 2 [Neisseria meningitidis G2136] gi|325203114|gb|ADY98568.1| peptide chain release factor 2 [Neisseria meningitidis M01-240149] Length = 341 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 6 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 65 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 66 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 121 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 180 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 181 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 240 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 241 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 297 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 298 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 339 >gi|332307386|ref|YP_004435237.1| hypothetical protein Glaag_3035 [Glaciecola agarilytica 4H-3-7+YE-5] gi|332174715|gb|AEE23969.1| hypothetical protein Glaag_3035 [Glaciecola agarilytica 4H-3-7+YE-5] Length = 365 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 169/343 (49%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + L +E A+ ++ I +Q + ++L + Sbjct: 28 DQKSERLEEVNRELESPDVWNEPERAQALGKEKVALEQVVETIVFLEQGCVDVEELLE-L 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 SD + D A+ ++ + ++ LE + + +D ++I++G+GG+EA Sbjct: 87 AVEESDQDTFDEAEKDLAELVAKLETLE----FRRMFSGPNDANDGYIDIQSGSGGTEAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ +K E++ SD D G K G F ++ E+GVHR+ Sbjct: 143 DWASMLLRMYLRWGEAHGFKTELIEVSDGDVAGIKSATIRFEGEYAFGWLRTETGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V PE + D+RIDT RASG+GGQHVN TDSAVR Sbjct: 203 RKSPFDSGSRRHTSFASVFAYPEIDDDIEIDIDPSDLRIDTYRASGAGGQHVNRTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PT I+V +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 263 ITHEPTNIVVQCQNDRSQHKNKAQAMKQLKAKLYEFEMQKQNEEKQNMEDSKSDIGWG-- 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 321 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIQASLK 362 >gi|325478551|gb|EGC81663.1| peptide chain release factor 2 [Anaerococcus prevotii ACS-065-V-Col13] Length = 347 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 105/341 (30%), Positives = 168/341 (49%), Gaps = 8/341 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK+ ++E + + + A ++ + Y++ K D ++ Sbjct: 10 LKDEIEKLEKKSQSPDFWNDSDAAQKTMADLALKKDDLEDYNKLKDGIADNTDMLDLVEL 69 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + EV K++ +L + D + L I AG GG EA + Sbjct: 70 SEDSELKTIEEVEISLKKLDKLAQAMKLKTQLSGEYDKNNAYLSINAGAGGLEATDWADM 129 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY RY R +K ++ ++ + GG K + + G + +K E GVHR+ R+ Sbjct: 130 LFRMYTRYFDDRGFKYDIKDLNNEEAGGIKSVTIHVKGSYAYGYLKGEKGVHRLVRISPF 189 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++ R HTS ++V + PE +I +DI D+RIDT RASG+GGQHVN TDSAVRITHIP Sbjct: 190 DSQSRRHTSFSSVDIFPELDDDIQIDIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIP 249 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIR 307 TG++ + +E+SQ QNR AM +L ++L ++ + + + QI G +IR Sbjct: 250 TGVVATSQAERSQIQNRQTAMNLLMSKLVQIKEEEQREKIEDIQGKYSQIAWG---SQIR 306 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F + DHR N + +E V+ G I I+ L ++ Sbjct: 307 SYVFQPYTMVKDHRTNFEMGNVESVMDGNIQGFIDAYLASN 347 >gi|296268776|ref|YP_003651408.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833] gi|296091563|gb|ADG87515.1| peptide chain release factor 2 [Thermobispora bispora DSM 43833] Length = 378 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 164/342 (47%), Gaps = 7/342 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I L+ + AE+E + + + K + +S + +++ ++ + +DL + Sbjct: 25 DIDGLRKQIAELEEQAAAPDLWNDPEKAQRVTSRLSHLQGEVNRIEELARRLEDLPVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + LA+ E + + + L D++ ++ I A GG +AA Sbjct: 85 LAAEEGDQEALAEAERELAKLKSDI--GALEVRTLLSGEYDEREALITINAQAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + + E+ +S ++ G K + T+ + +K E G HR+ R Sbjct: 143 WAQMLLRMYLRWAERKGYPTEIYDTSYAEEAGIKSVTFTVKAPYAYGTLKGEHGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V+P D++I ++IRID R+SG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQARRQTSFAGVDVMPVVEQTDDIEINEDEIRIDVYRSSGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QNR AM VL+A+L + +R+ A + R + + Sbjct: 263 THLPTGIVVSCQNERSQLQNRATAMAVLKAKLLERKRQEEAQAMAELRGE--TTTSWGTQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y + + D R + VL G +D I + Sbjct: 321 IRNYVLHPYQIVKDLRTGVESGNPTAVLDGDLDQFIEAEIRW 362 >gi|218459801|ref|ZP_03499892.1| peptide chain release factor 1 [Rhizobium etli Kim 5] Length = 230 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 163/228 (71%), Positives = 202/228 (88%) Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 GDLFRMYER+A+ + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFESGVHRVQRVP Sbjct: 1 GDLFRMYERFASEKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRVP 60 Query: 190 ATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 TEA GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+ Sbjct: 61 ETEAGGRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHL 120 Query: 250 PTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 P+GI+VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSGDRSERIRTY Sbjct: 121 PSGIVVTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIRTY 180 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 NF QGR+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 181 NFPQGRVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 228 >gi|194246573|ref|YP_002004212.1| Bacterial peptide chain release factor 1 [Candidatus Phytoplasma mali] gi|193806930|emb|CAP18362.1| Bacterial peptide chain release factor 1 [Candidatus Phytoplasma mali] Length = 347 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 135/344 (39%), Positives = 208/344 (60%), Gaps = 2/344 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ + ++ ++ + + ++L +E + I+ + Y ++E + I Sbjct: 3 DKLKKINQKYLNLQKLILLETNSKKKVQLFKEIGNLKEIVDNYNEYLNLEKELLKIKHFI 62 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +++++ + I E E +I YLL P + +D+K+ I++I+ GG EA Sbjct: 63 QNDSNNNDDLLNLAFQEQEILNEKIHNELKKIKYLLFPLEPEDNKNVIMQIKGAAGGDEA 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF DLFRMY +YA L+ WK+E+L+ N GG + +SG+ V+ +K+ESGVHRV Sbjct: 123 NLFSADLFRMYCKYAELKNWKLEILNLMTNIKGGISSVEFILSGKKVYYFLKYESGVHRV 182 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GR+HTS +TV V+PE EID I +DIR DT +SG GGQ VNTT SAVR Sbjct: 183 QRVPTTEVQGRIHTSTSTVLVMPEVDEIDFKIDWKDIRFDTFNSSGPGGQSVNTTKSAVR 242 Query: 246 ITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+P+ I + KSQH+N+ +A +L+AR+YD K+ + + RK +G G RSE Sbjct: 243 LTHLPSNISVACQIGKSQHENKKKAFSLLKARIYDKIHKQNMEKENKKRKFLVGDGQRSE 302 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IRTYN+ Q RITDHRI+L L KL+ +++G +D II PL+ + Sbjct: 303 KIRTYNYPQNRITDHRISLNLKKLDIIMEGKLDFIIEPLIDEYN 346 >gi|291486081|dbj|BAI87156.1| hypothetical protein BSNT_05369 [Bacillus subtilis subsp. natto BEST195] Length = 327 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 111/331 (33%), Positives = 167/331 (50%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + ++ ++ +E Q H ++ + +L Sbjct: 1 MADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQLELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 KELKSLTKDFNE-----FELQLLLSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 GERRGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V Sbjct: 176 SFVSCEVMPEFNDEIDIDIRAEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F Sbjct: 236 TERSQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + ++ V+ G ID I+ L Sbjct: 293 MVKDHRTNTEMGNVQAVMDGDIDTFIDAYLR 323 >gi|118594576|ref|ZP_01551923.1| Peptide chain release factor 2 [Methylophilales bacterium HTCC2181] gi|118440354|gb|EAV46981.1| Peptide chain release factor 2 [Methylophilales bacterium HTCC2181] Length = 355 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 110/346 (31%), Positives = 180/346 (52%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + K + ++ + + K+ +E + I+ + + Q+L Sbjct: 16 DLEEKKRTIKLLSIQQEDPKTWSDRALSQKIGKEKKVLEDIVHQADSLISDLADNQELFD 75 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + N + + +++ + ++I + + D +C ++ ++G+GG+E Sbjct: 76 MAVEEND-----LNTLTTIKSDTEKLEKSVDDIEFKRMFSHPMDPNNCFVDFQSGSGGTE 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + LFRMY RYA + +K+EVL ++ + G K I G F ++ ESG+HR Sbjct: 131 AQDWANMLFRMYTRYAERKNFKIEVLEYTEGEVAGIKGATLKIIGDYAFGFLRTESGIHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R ++ R HTS A V V PE E D+DI D+RIDT RASG+GGQH+N TDSA Sbjct: 191 LVRKSPFDSGSRRHTSFAGVNVYPEIDESIDIDINPSDLRIDTYRASGAGGQHINKTDSA 250 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH+PT +V +++SQH+N+ +AM +L+A+LY +E + E+ A K IG G Sbjct: 251 VRITHVPTNTVVQCQNDRSQHRNKAQAMNMLKAQLYAIELSKRNEEKQAMEDAKTDIGWG 310 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R NL + + VL G +D I+ L Sbjct: 311 ---HQIRSYVLDQSRIKDLRTNLEVGNTQGVLDGDLDMFISESLKQ 353 >gi|144897340|emb|CAM74204.1| peptide chain release factor 2 [Magnetospirillum gryphiswaldense MSR-1] Length = 372 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 164/341 (48%), Gaps = 16/341 (4%) Query: 15 RFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + + + KL E + +S + + L + Sbjct: 31 RLDELNAQAEDPNLWNDGDKAQKLMRERTQLDTQVSGCRKLEADLDDMLGLIELA----- 85 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D+E + A + +++L ++ L D C LEI +G GG+EA + Sbjct: 86 DAEGDTDVAADAEAQLRALKDLAGKLELETLLSGEADANDCYLEINSGAGGTEAQDWAEM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A +K+E + S + G K + G + +K E+GVHR+ R+ Sbjct: 146 LLRMYSRWAEQHGYKLEFVEESAGEGAGIKSATIRVVGHNAYGWLKTEAGVHRLVRISPF 205 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R TS A+ V P ID+ I D RIDT RASG+GGQH+N TDSAVRITHIP Sbjct: 206 DSNARRQTSFASAWVYPVVDDTIDIQINESDCRIDTYRASGAGGQHINKTDSAVRITHIP 265 Query: 251 TGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIR 307 TGI + +E+SQHQNR RA +LRARLY+ E ++ + K IG G +IR Sbjct: 266 TGIAVACQTERSQHQNRARAWDMLRARLYEAELQKREAAAQALEDTKTDIGWG---HQIR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y + I D R N+ + VL G +D + L + Sbjct: 323 SYVLQPYQMIKDLRTNVETSDTQAVLDGDLDMFMAASLASR 363 >gi|327327350|gb|EGE69126.1| peptide chain release factor 1 [Propionibacterium acnes HL103PA1] Length = 400 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 40 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 99 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 100 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 152 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 153 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 212 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 213 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 272 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 273 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 332 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 333 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 392 Query: 354 SASE 357 E Sbjct: 393 QRPE 396 >gi|56964831|ref|YP_176562.1| peptide chain release factor 2 [Bacillus clausii KSM-K16] gi|56911074|dbj|BAD65601.1| peptide chain release factor 2 [Bacillus clausii KSM-K16] Length = 328 Score = 223 bits (568), Expect = 3e-56, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 169/335 (50%), Gaps = 16/335 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M++ + + + + ++ + + DL ++ + + +L Sbjct: 1 MADPDFWNDQEQAQAIINETNGLKEQVHTFKDMAESYDDLEVSYELVREEDDTELASELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +++ N+ LL D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 -----SGLAALKQKMNQFELQLLLSAPYDKNNAILELHPGAGGTESQDWASMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R + VE L ++ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFAVETLDYLPGEEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE +D+++ ED++IDT RASG+GGQHVNTTDSAVRITH+PT +V Sbjct: 176 SFVSCEVMPELDDAVDIELNSEDLKIDTYRASGAGGQHVNTTDSAVRITHLPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+++A+LY + + E + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREQAMKMMKAKLYQLRIEEQERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + DHR + V+ G ID I+ L A Sbjct: 293 MVKDHRTGFEIGNTNSVMDGEIDGFIDAYLRQSLA 327 >gi|78485070|ref|YP_390995.1| peptide chain release factor 2 [Thiomicrospira crunogena XCL-2] gi|78363356|gb|ABB41321.1| bacterial peptide chain release factor 2 (bRF-2) [Thiomicrospira crunogena XCL-2] Length = 332 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 112/336 (33%), Positives = 175/336 (52%), Gaps = 15/336 (4%) Query: 18 EIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E+E + + + L +E + + +++ I + + ++ + + ++D E Sbjct: 3 EVERELEDPTVWNDPERAQALGKEKSQLDNVVTTIQDLESSLESAHEILEMA-EMDADQE 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + D E+ +E+++ +LE + D +C LEI+AG+GG+EA + + R Sbjct: 62 MVDEVVSELARLEEKLEQLEFQRM----FSGELDANNCYLEIQAGSGGTEAQDWANMILR 117 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A +K E+L S D G K + G F ++ E+GVHR+ R ++ Sbjct: 118 MYLRWAESHGFKAEILEISAGDVAGIKGATVHVQGDYAFGWLRTETGVHRLVRKSPFDSG 177 Query: 195 GRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V + PE +V+I D+RID RASG+GGQHVN T+SAVRITH+PT Sbjct: 178 NRRHTSFASVFISPEIDDSFEVEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNT 237 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDRSERIRTYN 310 + + +SQHQN+ AMK LRA+LY++E + + K IG G +IR+Y Sbjct: 238 VTQCQNGRSQHQNKAEAMKQLRAKLYELEMLSRNAEKQEMEENKSDIGWG---SQIRSYV 294 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 GRI D R N+ VL G +D I P L A Sbjct: 295 LDSGRIKDLRTNVETGNTNGVLDGDLDQFIIPSLKA 330 >gi|83942252|ref|ZP_00954713.1| peptide chain release factor 2 [Sulfitobacter sp. EE-36] gi|83846345|gb|EAP84221.1| peptide chain release factor 2 [Sulfitobacter sp. EE-36] Length = 374 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 121/337 (35%), Positives = 173/337 (51%), Gaps = 13/337 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E R+ + D + ++ I+ Y+ KQE D +I + D Sbjct: 31 RLEEFNARVEDPNLWDDPDAAQKLMRDRQALVDSIATYEGIKQELADNIELIELGEMEGD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+ A+ + + + + E L D LEI AG GG+E+ + L Sbjct: 91 DEVIAEAETALKKLAETAAQKEL----EALLNGEADGNDTFLEINAGAGGTESCDWANIL 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 SRMYVRWAEKKGYKVELQSESPGEEAGIKSATYKISGPNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS ++ V P I++DI DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFTSIWVYPVVDDNIEIDINPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTY 309 GI+VTSSEKSQHQNR AMK L++RLY +E R + K G G+ +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENKGDAGWGN---QIRSY 323 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R N + VL G +D ++ L Sbjct: 324 VLQPYQMVKDLRTNYETSDTKGVLDGDLDGLMGAALA 360 >gi|313901293|ref|ZP_07834780.1| peptide chain release factor 2 [Clostridium sp. HGF2] gi|312953901|gb|EFR35582.1| peptide chain release factor 2 [Clostridium sp. HGF2] Length = 349 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 170/349 (48%), Gaps = 12/349 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEE 59 +SH + + K++ E+ + + + I I+ + Sbjct: 4 LVSHFDLAEKKHKIQELTSMTLQDDFWNDPQHAQTLIRQLNGIKDIVESYEKLNSALIGL 63 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ H ++ + D A E+ + ++ +L D S ILE+ G Sbjct: 64 EETHDLLKEDYDDEIFE-----LFEAEYLEMEKNFDDFEIKILLSHEYDHSSAILELHPG 118 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+E+ + L+RMY R+A + +KV VL D+ G K + + G + +K E Sbjct: 119 AGGTESCDWADMLYRMYSRWAEKKGFKVSVLDYLPGDEAGIKSVTFLVEGDMAYGYLKAE 178 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++ GR HTS A++ V+P+ +++I ED+ ++T RASG+GGQH+N Sbjct: 179 KGVHRLVRISPFDSGGRRHTSFASLDVMPQFNNEIEIEIKPEDLIVETKRASGAGGQHIN 238 Query: 239 TTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVR+ H PTG++ + + +SQH+NR A++VL++RLY + + + Q Sbjct: 239 KTDSAVRMVHKPTGLVAICQNGRSQHENREEALRVLKSRLYQKMIEEQEARLAEIKGEQK 298 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + +IR+Y F + DHR + ++ V+ G +D I L Sbjct: 299 AN-EWGSQIRSYVFHPYSMVKDHRTSCETSDVQGVMDGDLDAFIFAYLK 346 >gi|325981471|ref|YP_004293873.1| hypothetical protein NAL212_0774 [Nitrosomonas sp. AL212] gi|325530990|gb|ADZ25711.1| hypothetical protein NAL212_0774 [Nitrosomonas sp. AL212] Length = 368 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 103/344 (29%), Positives = 176/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + +S ++ E ++ + + +++ + ++L + Sbjct: 30 DSKQTRLNELTRLLEDSTVWSDSKRTQEIGREKKSLEDTVVTLVSMEKQLGDAKELFQIA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + A + + + I + + + + D +C ++I++G+GG+EA Sbjct: 90 KDEAD-----EAALVSISLDAENIEKAIANLEFRRMFSGPMDSNNCFVDIQSGSGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY + + VE+L S D G K ISG + ++ E+GVHR+ Sbjct: 145 DWAAMLERMYLRYCERQGFDVEILEESPGDIAGIKSATLKISGEYAYGFLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSA+R Sbjct: 205 RKSPFDSGNRRHTSFSSVFVYPEVDDSIEIEINPADLRIDTFRASGAGGQHINKTDSAIR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PTGI+V S +SQH+N+ A+ +L++RL++ E ++ E+ K IG G Sbjct: 265 ITHNPTGIVVQCQSGRSQHRNKADALTMLKSRLFEAELRKRNEEKQAIEENKTDIGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N+ + + VL G ++ I L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNVEVGNTQNVLDGDLNSFIEASLKQ 365 >gi|229821252|ref|YP_002882778.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333] gi|259585260|sp|C5BYB6|RF2_BEUC1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|229567165|gb|ACQ81016.1| peptide chain release factor 2 [Beutenbergia cavernae DSM 12333] Length = 374 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 108/347 (31%), Positives = 166/347 (47%), Gaps = 11/347 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 L+ R AE+ + D + + +S S++ D + DL T+ + Sbjct: 26 DALRARIAELSEAAAAPDLWDDPDAAQKVTSRLSHTQSELERLDTLRSRIDDLETLVQLA 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D++ A+ E+ I + ELE L D + ++ IR+G GG +AA Sbjct: 86 AEEDDADTLAEAEAELTKIRTSMGELEV----RTLLAGEYDSREAVVTIRSGAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + + +VL +S ++ G K + F + E+G HR+ R Sbjct: 142 FAEMLLRMYLRWAERKGYPTQVLDTSYAEEAGLKSATFEVKVPYAFGTLSVEAGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P +DIP DIRID R+SG GGQ VNTTDSAVRI Sbjct: 202 ISPFDNQGRRQTSFAAVEVIPLIEQTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRI 261 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V+ +EKSQ QNR AM+VL++RL ++ ++ S ++ Sbjct: 262 THLPTGIVVSMQNEKSQIQNRAAAMRVLQSRLLLAMQEEENAKKKELAGDVKAS--WGDQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +R+Y + + D R + V G IDD I + + + Sbjct: 320 MRSYVLQPYQMVKDLRTEHEVGNPSAVFDGDIDDFIEAGIRWRRQQQ 366 >gi|110802702|ref|YP_699445.1| peptide chain release factor 2 [Clostridium perfringens SM101] gi|123145940|sp|Q0SR12|RF2_CLOPS RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 364 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 175/346 (50%), Gaps = 9/346 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + L+ + AE+EL+M E+ D K E + KI + + D+ Sbjct: 22 MGASLDLASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDV 81 Query: 63 HTVIG-DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + +D E EV A+ KEI L + D + IL + G G Sbjct: 82 EVLKELMEENDEETAKEIISEVKALSKEIDTL----KIETILSGEYDRNNAILTLHTGVG 137 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 GS+A + L RMY R+ + + +E + D+ G K + + G + +K E G Sbjct: 138 GSDANDWTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKG 197 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ A+G+ TS A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T Sbjct: 198 IHRLVRISPFNANGKRQTSFASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKT 257 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRITHIPTGI+V +E+SQ NR AM +L+++L +++ +R E+ + ++ Sbjct: 258 ESAVRITHIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKD 316 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y F + DHR N+ + V+ G ID+ I L Sbjct: 317 MGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMGGDIDNFIIAYL 362 >gi|83955487|ref|ZP_00964118.1| peptide chain release factor 2 [Sulfitobacter sp. NAS-14.1] gi|83840131|gb|EAP79306.1| peptide chain release factor 2 [Sulfitobacter sp. NAS-14.1] Length = 374 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 121/337 (35%), Positives = 173/337 (51%), Gaps = 13/337 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E R+ + D + ++ I+ Y+ KQE D +I + D Sbjct: 31 RLEEFNARVEDPNLWDDPDAAQKLMRDRQALVDSIATYEGIKQELADNIELIELGEMEGD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+ A+ + + + + E L D LEI AG GG+E+ + L Sbjct: 91 DEVIAEAETALKKLAETAAQKEL----EALLNGEADGNDTFLEINAGAGGTESCDWANIL 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 SRMYVRWAEKKGYKVELQSESPGEEAGIKSATYKISGPNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS ++ V P I++DI DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFTSIWVYPVVDDNIEIDINPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTY 309 GI+VTSSEKSQHQNR AMK L++RLY +E R + K G G+ +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENKGDAGWGN---QIRSY 323 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R N + VL G +D ++ L Sbjct: 324 VLQPYQMVKDLRTNFETSDTKGVLDGDLDGLMGAALA 360 >gi|314981451|gb|EFT25545.1| peptide chain release factor 1 [Propionibacterium acnes HL110PA3] Length = 379 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 19 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 78 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 79 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 131 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 132 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 191 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 192 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 251 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 252 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 311 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 312 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 371 Query: 354 SASE 357 E Sbjct: 372 QRPE 375 >gi|15644327|ref|NP_229379.1| peptide chain release factor 2 [Thermotoga maritima MSB8] gi|7388057|sp|Q9X1R5|RF2_THEMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|4982148|gb|AAD36646.1|AE001802_15 peptide chain release factor RF-2 [Thermotoga maritima MSB8] Length = 369 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 177/336 (52%), Gaps = 8/336 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ E+E ++++ D K E + + + + + +DL I Sbjct: 29 DEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELS 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D E+ + V +E +++LE ++ D + L + G GG+E+ + Sbjct: 89 DEDQEMAQHVEEIVQELEGAVKKLEL----EIILNGKYDPNNAYLSVHPGAGGTESQDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + VE++ ++ G K+ I G + +K ESGVHR+ R+ Sbjct: 145 QMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V V+PE + D++I ED++I+T RASG GGQ+VN T+SAVRITH Sbjct: 205 PFDAARRRHTSFASVNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQHQN+ A+K+L+A+LY +E ++ E + ++ +IR Sbjct: 265 LPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEI-QGELKDISWGNQIR 323 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINP 342 +Y F + DHR + ++ V+ G ID I Sbjct: 324 SYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEA 359 >gi|197105302|ref|YP_002130679.1| peptide chain release factor 2 [Phenylobacterium zucineum HLK1] gi|238690157|sp|B4RCR3|RF2_PHEZH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|196478722|gb|ACG78250.1| peptide chain release factor 2 [Phenylobacterium zucineum HLK1] Length = 369 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 168/342 (49%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+ R+ + + ++ E + +S + + ++ + + + Sbjct: 27 RKLDELNARVEDPTLWNDPDEAQAVSRERSRLSAQVEAVHGLERDLADALGYAELADEEG 86 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ + + E+ R L D +EI +G GG+E+ + G Sbjct: 87 DEASLDEARAQLREIKERAAR-----AELEALLSGEADGNDAYVEINSGAGGTESNDWAG 141 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A V+V+ + + G K + + G + +K E+GVHR+ R+ Sbjct: 142 MLLRMYTRWAQAHGMSVDVIEETAGEQAGIKSVTLQVKGTNAYGWLKTEAGVHRLVRISP 201 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS A+V V P I+++I D+R DT RASG+GGQHVN TDSAVR+THI Sbjct: 202 YDSSARRHTSFASVWVYPVIDDNIEIEINPADVRTDTYRASGAGGQHVNKTDSAVRLTHI 261 Query: 250 PTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI + +++SQHQNR +A K+LRARLY++E ++ + ++K IG G +I Sbjct: 262 PTGIAVACQTQRSQHQNRDQAWKMLRARLYELELEKREAAQQALEDQKTDIGWG---HQI 318 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R + + VL G +D + L Sbjct: 319 RSYVLQPYQMVKDLRTEVETSDTQGVLDGDLDAFMGAALAQR 360 >gi|76787098|ref|YP_329299.1| peptide chain release factor 2 [Streptococcus agalactiae A909] gi|123602195|sp|Q3K2F4|RF2_STRA1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|76562155|gb|ABA44739.1| peptide chain release factor 2, programmed frameshift [Streptococcus agalactiae A909] Length = 365 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 188/348 (54%), Gaps = 12/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E +M+E + I + ++ + K + ++ + ++ Sbjct: 25 DLDRLEEEIALLENQMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D +++ + ++ + ++ LL + D + ILEI G+GG+EA Sbjct: 85 MLDEDDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R Sbjct: 141 WGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G Sbjct: 261 THIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 365 >gi|332983173|ref|YP_004464614.1| peptide chain release factor 2 (bRF-2) [Mahella australiensis 50-1 BON] gi|332700851|gb|AEE97792.1| bacterial peptide chain release factor 2 (bRF-2) [Mahella australiensis 50-1 BON] Length = 353 Score = 223 bits (567), Expect = 4e-56, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 185/347 (53%), Gaps = 10/347 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--H 69 ++ +E +M++ + + I + K+ +Q+ +DL T+ Sbjct: 12 MEEEIKNLEKQMADPSFWSDMERSQKVNQRIKALKDKLQNLRAVEQKWEDLRTLADLGRE 71 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D+ I E+ ++ KE+ L L D + I+ + AG GG+EA +V Sbjct: 72 EDDASIVGEVAAELASLRKEVERL----RIETLLSGPYDRNNAIVTLHAGAGGTEAQDWV 127 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+A + +KVEVL + D+ G K + + G + +K E GVHR+ R+ Sbjct: 128 QMLYRMYTRWAEDKGYKVEVLDLLEGDEAGIKSVTFLVEGENAYGYLKAEKGVHRLVRIS 187 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+GR HTS A+V V+PE + V+I ED++IDT R+SG+GGQHVN T+SA+RITH Sbjct: 188 PFDAAGRRHTSFASVDVMPELDDDEGVEINPEDLKIDTYRSSGAGGQHVNKTESAIRITH 247 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +E+SQH N+ AMK+L+A+L +++ + + S K ++ + +IR Sbjct: 248 IPTGIVVQCQNERSQHSNKETAMKMLKAKLLELKEQEEQAKISDI-KGELKRIEWGSQIR 306 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +Y F + DHR N + + V+ G ID I+ L + + Sbjct: 307 SYIFQPYTMVKDHRTNAEIGNVNAVMDGDIDLFISEYLKMNAKQRRA 353 >gi|314923482|gb|EFS87313.1| peptide chain release factor 1 [Propionibacterium acnes HL001PA1] gi|315092954|gb|EFT64930.1| peptide chain release factor 1 [Propionibacterium acnes HL060PA1] gi|315103525|gb|EFT75501.1| peptide chain release factor 1 [Propionibacterium acnes HL050PA2] Length = 379 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 19 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 78 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 79 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 131 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 132 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 191 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 192 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 251 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 252 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 311 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 312 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 371 Query: 354 SASE 357 E Sbjct: 372 QRPE 375 >gi|170289031|ref|YP_001739269.1| peptide chain release factor 2 [Thermotoga sp. RQ2] gi|281412649|ref|YP_003346728.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10] gi|238688848|sp|B1LB88|RF2_THESQ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|170176534|gb|ACB09586.1| peptide chain release factor 2 [Thermotoga sp. RQ2] gi|281373752|gb|ADA67314.1| peptide chain release factor 2 [Thermotoga naphthophila RKU-10] Length = 367 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 177/336 (52%), Gaps = 8/336 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ E+E ++++ D K E + + + + + +DL I Sbjct: 27 DEINKELEEVEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELS 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D E+ + V +E +++LE ++ D + L + G GG+E+ + Sbjct: 87 DEDQEMAQHVEEIVQELEGAVKKLEL----EIILNGKYDPNNAYLSVHPGAGGTESQDWA 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + VE++ ++ G K+ I G + +K ESGVHR+ R+ Sbjct: 143 QMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRIS 202 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V V+PE + D++I ED++I+T RASG GGQ+VN T+SAVRITH Sbjct: 203 PFDAARRRHTSFASVNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQHQN+ A+K+L+A+LY +E ++ E + ++ +IR Sbjct: 263 LPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKRREIQEI-QGELKDISWGNQIR 321 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINP 342 +Y F + DHR + ++ V+ G ID I Sbjct: 322 SYIFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEA 357 >gi|269797862|ref|YP_003311762.1| peptide chain release factor 2 [Veillonella parvula DSM 2008] gi|269094491|gb|ACZ24482.1| bacterial peptide chain release factor 2 (bRF- 2) [Veillonella parvula DSM 2008] Length = 368 Score = 223 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 183/352 (51%), Gaps = 14/352 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 H I ++R ++++MS+ D K E + + + + Y Q + +D Sbjct: 19 MGIHFNIAQKEDRIFTLDVQMSDPTFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDA 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ + D + + +++ LE LLL D + IL AG GG Sbjct: 79 NVML-EMAIDEDDLSMESEIKEYVKQIEETLEK-QEVLLLLSGEYDANNAILTFHAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+A + +E++ D+ G K + G F +K E GV Sbjct: 137 TEAQDWCSMLIRMYLRWAEKSGFSIELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+ R HTS A V V+PE + +++I ++D+++DT RASG+GGQH+N TD Sbjct: 197 HRLVRISPFDAAARRHTSFAAVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTD 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS- 299 SAVR+TH PTGI+V +++SQ QNR +A+++LRA+L+++E ++ A K QIG Sbjct: 257 SAVRMTHKPTGIVVQCQTQRSQMQNREQALRLLRAKLFELELEKQAEL-----KEQIGGT 311 Query: 300 ---GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +IR+Y F + DHR ++ ++ V+ G +D I L Sbjct: 312 YQAIEWGSQIRSYVFHPYNLVKDHRTSVETGNVQAVMDGNLDPFIEGFLKKE 363 >gi|298291326|ref|YP_003693265.1| peptide chain release factor 2 [Starkeya novella DSM 506] gi|296927837|gb|ADH88646.1| peptide chain release factor 2 [Starkeya novella DSM 506] Length = 376 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 164/343 (47%), Gaps = 16/343 (4%) Query: 13 KNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R AE+ + + KL +E + + I +++ + +L + Sbjct: 29 KARLAELNALAEDPNLWNDPERAQKLMQERGTLEDGLGAIERINRELADNVELIELGEAE 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 DS + + A + R L D LE+ AG GG+++ + Sbjct: 89 GDDSIVDEAAAALDRLKAEVAR-----RQLEALLSGEADSNDSYLEVHAGAGGTDSQDWA 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A R +KVE++ + G K + G + +K E GVHR+ R+ Sbjct: 144 LMLLRMYTRWAERRGFKVELIEEQAGETAGLKSATMLVKGHNAYGWLKTEGGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R TS A++ V P + VDI D+R+DTMR+ G+GGQHVN T+SAVR+TH Sbjct: 204 PFDSNARRQTSFASIDVYPVIDDRIVVDIKEADVRVDTMRSGGAGGQHVNKTESAVRLTH 263 Query: 249 IPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA--NERSANRKLQIGSGDRSER 305 IPTGI +V+ ++SQH+NR A +LRA+LY++E K+ K IG G + Sbjct: 264 IPTGIAVVSQGDRSQHKNRATAWDMLRAKLYEMELKKREAQAAADQAAKTDIGWG---HQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + D R +T + VL G +D + L Sbjct: 321 IRSYVLQPYQLVKDLRTGVTSGTPQEVLDGDLDPFMEAALAQR 363 >gi|315649817|ref|ZP_07902900.1| peptide chain release factor 2 [Paenibacillus vortex V453] gi|315274791|gb|EFU38172.1| peptide chain release factor 2 [Paenibacillus vortex V453] Length = 339 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 173/335 (51%), Gaps = 6/335 (1%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 E +M+ D K A ++ + S + Y + +Q+ D + D E Sbjct: 2 IENFEEKMAAPDFWDDNEKAQALIAEMNAVKSSVDQYQKLQQDYDDAVVMTELA--DEEG 59 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 D E+ K++ + E LL D + ILE+ G GG+E+ + L RM Sbjct: 60 DDSLAGEIGETIKDLVKRVEEFELQLLLNQPYDKMNAILELHPGAGGTESQDWGQMLHRM 119 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SG Sbjct: 120 YTRWAEKRGFKVETLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPFDSSG 179 Query: 196 RVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 R HTS + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PTG++ Sbjct: 180 RRHTSFVSCDVVPEINDEIELDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTGVV 239 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V +E+SQ +NR RAM +LR++LY+ + + E + R Q +IR+Y F Sbjct: 240 VTCQNERSQIKNRERAMTMLRSKLYERKIEEQKKELAEIRGEQ-SEIAWGSQIRSYVFHP 298 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + V+ G +D I+ L + Sbjct: 299 YSMAKDHRTQVETGNIGAVMDGDLDAFIDGYLRSQ 333 >gi|262203335|ref|YP_003274543.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247] gi|262086682|gb|ACY22650.1| peptide chain release factor 2 [Gordonia bronchialis DSM 43247] Length = 371 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E++ S+ + + + +S S+ + +Q DL + Sbjct: 24 DLEELRRRIDELEMQASDPDLWNDQEHAQKVTSELSHAQSEFRKVSELRQRLDDLPVLYE 83 Query: 68 DHNSDS-EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + R A + A +R + + D + ++ IR+G GG +AA Sbjct: 84 LAEAEEGDDRVSALADADADRAALRADIEAMEVKTMLAGEYDQRDALVNIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VEV +S ++ G K + ++ + E G HR+ Sbjct: 144 DWALMLMRMYIRWAEQHGYGVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DI D+++D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVQTTDHIDIDENDVKVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+PTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A K GS Sbjct: 264 LTHLPTGIVVTCQNEKSQLQNKASAMRVLQAKLLERKRQEERAELDAL-KGDGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G +D I + A Sbjct: 322 QMRSYVLHPYQMVKDLRTGVEDNNPSAVLDGELDKFIEAGIRWRMAD 368 >gi|314966526|gb|EFT10625.1| peptide chain release factor 1 [Propionibacterium acnes HL082PA2] Length = 379 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 19 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 78 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 79 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 131 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 132 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 191 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 192 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 251 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 252 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 311 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 312 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 371 Query: 354 SASE 357 E Sbjct: 372 QRPE 375 >gi|254429259|ref|ZP_05042966.1| peptide chain release factor 2 [Alcanivorax sp. DG881] gi|196195428|gb|EDX90387.1| peptide chain release factor 2 [Alcanivorax sp. DG881] Length = 356 Score = 222 bits (566), Expect = 5e-56, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 173/351 (49%), Gaps = 22/351 (6%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+E + + L +E A + +++ I+ Q ++ L ++ Sbjct: 12 DQKSERLTEVERELENPDVWNDPDYARALGKERAQLEMVVNTINDASQGVEDTSALLDLV 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + +++ ++ ++ + + D S L+I+AG+GG+EA Sbjct: 72 VEEGDEDTLTEVE-----SDLRDLEKMVADLEFRRMFSGQMDACSAYLDIQAGSGGTEAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY R+ +K E++ +S D G K G + ++ E+GVHR+ Sbjct: 127 DWGEMMLRMYLRWGEAHGFKTELVEASAGDVAGIKSATIRFEGEYAYGWLRTETGVHRLV 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ GR HTS ++V V PE + +R+DT RASG+GGQHVN TDSAVR Sbjct: 187 RKSPFDSGGRRHTSFSSVFVSPEVDDDIDVDIDVGSMRVDTYRASGAGGQHVNRTDSAVR 246 Query: 246 ITHIPTG--------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKL 295 +T+ T + S +SQHQN+ +A+K+++A++Y+VE +R E+ + K Sbjct: 247 LTYEYTDEGGEKHTLVTQCQSGRSQHQNKDQALKMMQAKVYEVEMQRRNAEKQVQESNKS 306 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IG G +IR+Y GRI D R + + + VL G +D I L A Sbjct: 307 DIGWG---SQIRSYVLDDGRIKDLRTGVESHNTQQVLDGALDQFIEASLKA 354 >gi|182419781|ref|ZP_02951021.1| peptide chain release factor 2 [Clostridium butyricum 5521] gi|237666525|ref|ZP_04526510.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376329|gb|EDT73911.1| peptide chain release factor 2 [Clostridium butyricum 5521] gi|237657724|gb|EEP55279.1| peptide chain release factor 2 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 347 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 112/349 (32%), Positives = 175/349 (50%), Gaps = 7/349 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + H L+ E+E +M E D K E I KI YD+ K + Sbjct: 1 MKWGLHFDRAGLEKELHELECKMQEPGFWDDSKKAEEVTKKSKLIKDKIENYDKLKSQLD 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ + D I+ K I + N +L D + I+ + G Sbjct: 61 DIDVLKDIMEEDDIESANEIIQT---IKSIEHEIEDYNMKILLSGEYDKNNAIVTLHVGV 117 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG++A + L RMY R+ + + VE + D+ G K + ++G V+ +K E Sbjct: 118 GGTDANDWTEMLLRMYTRWCENKGYSVETIDLIAGDEAGIKSVTLKVTGEYVYGYLKAEK 177 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 G+HR+ R+ A+G+ TS A++ VLPE E D+ I +D+++DT R+SGSGGQH+N Sbjct: 178 GIHRLVRISPYNANGKRQTSFASMEVLPELTKEQDITIRPDDLKVDTYRSSGSGGQHINK 237 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTGI+V +E+SQ NR AM++L+++L +++ +R E+ + ++ Sbjct: 238 TDSAVRITHIPTGIVVQCQNERSQFSNRETAMEMLKSKLVELK-ERAHKEKIEDLTGELK 296 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N+ + V+ G ID IN L Sbjct: 297 DMGWGSQIRSYVFHPYSMVKDHRTNVETSNVNGVMDGDIDLFINAFLKQ 345 >gi|328956713|ref|YP_004374099.1| peptide chain release factor 2 [Carnobacterium sp. 17-4] gi|328673037|gb|AEB29083.1| peptide chain release factor 2 [Carnobacterium sp. 17-4] Length = 351 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 114/351 (32%), Positives = 183/351 (52%), Gaps = 16/351 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + L+ AE RM+E D K + + K + Y E+++L Sbjct: 1 MGGLFDLETLERDIAEYNDRMTEPTFWDDAQKAQAIINEANELKEKYNQYKDLLTEKEEL 60 Query: 63 HT---VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ + N + +++L ++K + LL D D + I+E+ G Sbjct: 61 DLLLEMVKEENDEELVKELDSKINPFLDKLDQ-----YELELLLSDPYDKNNAIIELHPG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+E+ + L RMY R+A R +K+E L D+ G K + I G + +K E Sbjct: 116 AGGTESQDWGNLLLRMYTRWAEKRGFKIETLDYQSGDEAGIKSVTLLIKGMNAYGYLKAE 175 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ +++GR HTS ++ V+PE +D+ I +D+++DT RASG+GGQH+N Sbjct: 176 KGVHRLVRISPFDSAGRRHTSFVSIDVVPELDDSVDIKINSDDLKVDTYRASGAGGQHIN 235 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ- 296 TTDSAVRITH+PTG++V + +++SQ +NR +AM +L+A+L+ +E + E +A R Q Sbjct: 236 TTDSAVRITHMPTGVVVASQAQRSQLKNREQAMSMLKAKLHQLEVEEHEKEMAAIRGEQL 295 Query: 297 -IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IG G +IR+Y F + DHR N + V+ G ID I L Sbjct: 296 EIGWG---SQIRSYVFHPYSMVKDHRTNYETGNISQVMDGGIDPFIQAYLR 343 >gi|319638812|ref|ZP_07993570.1| peptide chain release factor 2 [Neisseria mucosa C102] gi|317399716|gb|EFV80379.1| peptide chain release factor 2 [Neisseria mucosa C102] Length = 367 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMAVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEDGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|316940875|gb|ADU74909.1| Peptide chain release factor 2 [Clostridium thermocellum DSM 1313] Length = 375 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 113/346 (32%), Positives = 182/346 (52%), Gaps = 6/346 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I + N+ E+E + SE + + I + SK+ Y++ + +DL Sbjct: 21 MGKSLDIASIGNQIEELEQKASEPDFWNDTENSQKILQKIKSLRSKVERYNKLVSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 T+ + + + + + + L D + IL + AG GG Sbjct: 81 ITLCELGIEEQDESVIPEAVEGFKAFKKEFEALRLETL--LTGQYDKNNAILTLHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V LFRMY R+A + + V+VL D ++ G K + + G + +K E GV Sbjct: 139 TEAQDWVQMLFRMYTRWAEKKGFTVKVLDYLDGEEAGIKSVTFQVIGENAYGFLKSEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +ASGR HTS A++ V+PE +I+V I +D+RIDT R+SG+GGQH+N T+ Sbjct: 199 HRLVRISPFDASGRRHTSFASLDVMPELNDDIEVHINPDDLRIDTYRSSGAGGQHINKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITHIPTGI+V SE+SQ QN+ AMK+L+A+L +++ + + + +Q+ Sbjct: 259 SAVRITHIPTGIVVSCQSERSQFQNKDTAMKMLKAKLMELKERENKEKIEDLKGIQLE-I 317 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N ++ V+ G +D IN L+ Sbjct: 318 AWGSQIRSYVFCPYTLVKDHRTNYEEINVDAVMDGELDGFINSYLS 363 >gi|317493835|ref|ZP_07952252.1| peptide chain release 2 [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918162|gb|EFV39504.1| peptide chain release 2 [Enterobacteriaceae bacterium 9_2_54FAA] Length = 320 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 102/324 (31%), Positives = 170/324 (52%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ I++ I+ Q + L + + + + + Sbjct: 3 NEPERAQALGKERSSLEEIVNTINQMTQGLDDVSGLLELAIEADDEETFNEAVVE----- 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 ++ ++ + + D C ++I+AG+GG+EA + L RM+ R+A + +K Sbjct: 58 LDQLDAKLAQLEFRRMFSGEYDSADCYIDIQAGSGGTEAQDWASMLLRMFLRWAEAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ SD + G K ISG + ++ E+GVHR+ R ++ GR HTS ++ V Sbjct: 118 TEIIEESDGEVAGLKSATVKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+ Sbjct: 178 YPEVDDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTNIVTQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AM+ L+A+LY+ E ++ E+ + K IG G +IR+Y RI D R Sbjct: 238 NKDQAMRQLKAKLYEYEMQKKNAEKQVMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D I L A Sbjct: 295 VETRNTQAVLDGDLDRFIEASLKA 318 >gi|304391525|ref|ZP_07373467.1| peptide chain release factor 2 [Ahrensia sp. R2A130] gi|303295754|gb|EFL90112.1| peptide chain release factor 2 [Ahrensia sp. R2A130] Length = 374 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 166/345 (48%), Gaps = 15/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + K L +E + I+ I+ + + +DL + Sbjct: 26 EKANTRLEELNAASEDPDLWNDPGKAQLLMKERQQLETGITSINGLEGDLGDTKDLIELA 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + L D E+ +G GG+E+ Sbjct: 86 EMEDDADVLAEAESALRELHADLGK-----RQAATLLSGEADANDTYFEVHSGAGGTESN 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +KVEV +++ D+ G K + G + MK ESGVHR+ Sbjct: 141 DWANMLLRMYIRWAETNGYKVEVQATTSGDEAGIKAATVLVKGANAYGYMKTESGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ ++ + HTS ++V V P I++ +P +IR+DT R+SG+GGQHVNTTDSAVR Sbjct: 201 RISPYDSQAKRHTSFSSVWVYPVIDDNIEIIVPDNEIRLDTFRSSGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRS 303 ITHIPTGI+VTSSEKSQHQNR AMK L++RLY+ E ++ + + K IG G Sbjct: 261 ITHIPTGIVVTSSEKSQHQNRANAMKALKSRLYEAEMQKRNEATQAAHEAKSDIGWG--- 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + VL G ++ + L Sbjct: 318 HQIRSYVLQPYQLVKDLRTGVESTNPSAVLDGDLNAFMEAALAHQ 362 >gi|109897685|ref|YP_660940.1| peptide chain release factor 2 [Pseudoalteromonas atlantica T6c] gi|109699966|gb|ABG39886.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudoalteromonas atlantica T6c] Length = 348 Score = 222 bits (566), Expect = 6e-56, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 168/343 (48%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + L +E A+ ++ I +Q E ++L + Sbjct: 11 DQKNERLEEVNRELESPDVWNEPERAQALGKEKVALEQVVETIVFLEQGCVEVEELLE-L 69 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 SD E D A+ ++ + + LE + + +D ++I++G+GG+EA Sbjct: 70 AVEESDQETLDEAEKDLAELVSRLETLE----FRRMFSGPNDANDGYIDIQSGSGGTEAQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ +K E++ SD D G K G F ++ E+GVHR+ Sbjct: 126 DWASMLLRMYLRWGEAHGFKTELIEVSDGDVAGIKSATIRFEGEYAFGWLRTETGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V PE + D+RIDT RASG+GGQHVN TDSAVR Sbjct: 186 RKSPFDSGSRRHTSFASVFAYPEIDDDIEIDIDPSDLRIDTYRASGAGGQHVNRTDSAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH PT I+V +++SQH+N+ +AMK L+A+LY+ E ++ E+ + K IG G Sbjct: 246 ITHEPTNIVVQCQNDRSQHKNKAQAMKQLKAKLYEFEMQKQNEEKQTMEDSKSDIGWG-- 303 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 304 -SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIQASLK 345 >gi|253701853|ref|YP_003023042.1| hypothetical protein GM21_3258 [Geobacter sp. M21] gi|251776703|gb|ACT19284.1| conserved hypothetical protein [Geobacter sp. M21] Length = 371 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 179/343 (52%), Gaps = 11/343 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D K R E+E S + + + + + ++I++ ++ +D+ +I Sbjct: 25 VDDKKERMQELEELTSRPDFWNDAENAQKVLRSRTAMEKDVTIWESLDKQARDIQELIEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + EV A+ ++ ++ + + D + I +G GG+E+ + Sbjct: 85 GSEEQD--EATLAEVAAMNAQLETGVSQAEFRRMLSGPHDASGAFVSINSGAGGTESQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + WK E+ + D G K + ++G + +K E+G+HR+ R+ Sbjct: 143 AEMLLRMYLRYCEKKGWKTEITDYQEGDGAGVKGVTFAVTGEFAYGYLKAEAGIHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++S R HTS A+ V P E D++I D+RIDT R+SG+GGQHVNTTDSA+RI Sbjct: 203 SPFDSSARRHTSFASAFVFPVIEEDDIEIKIAESDLRIDTYRSSGAGGQHVNTTDSAIRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 THIPTG +V SE+SQH N+ AMKVLR++LY++E + + S K +IG G Sbjct: 263 THIPTGTVVACQSERSQHMNKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWG--- 319 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + K + VL G +DD + P L Sbjct: 320 SQIRSYVLHPYKMVKDLRTGVESGKPDAVLDGALDDFVVPYLM 362 >gi|295689553|ref|YP_003593246.1| hypothetical protein Cseg_2164 [Caulobacter segnis ATCC 21756] gi|295431456|gb|ADG10628.1| conserved hypothetical protein [Caulobacter segnis ATCC 21756] Length = 373 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 167/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+ R+ + D ++ E AA++ + + ++ ++ + + Sbjct: 30 RKLDELNARVEDPTLWDRPSEAQAVSRERAALAAKVEAVQSIERDLKDAVEYAELADMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + D K +++ L D +EI +G GG+E+ + G Sbjct: 90 DEESLNDAR-----VQLKALKDRAGRAELEALLSGEADGNDAYIEINSGAGGTESCDWAG 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + E++ +D D G K + G + +K E+GVHR+ R+ Sbjct: 145 ILLRMYTRWANAHGMQTELIEETDGDQAGIKSATLLVKGPNAYGWLKTEAGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS A+ V P I+++I D+R DT RASG+GGQH+N TDSAVR+THI Sbjct: 205 YDSSARRHTSFASAWVYPVVDDTIEIEINPADVRTDTYRASGAGGQHINKTDSAVRLTHI 264 Query: 250 PTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI + + +SQHQNR A K+LRARLY+ E ++ + ++K IG G +I Sbjct: 265 PTGIAVACQAGRSQHQNREEAWKMLRARLYEAELQKREAAQQALEDQKTDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R N+ + VL G +D + L Sbjct: 322 RSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDAFMGAALAQR 363 >gi|291459037|ref|ZP_06598427.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078 str. F0262] gi|291418291|gb|EFE92010.1| peptide chain release factor 2 [Oribacterium sp. oral taxon 078 str. F0262] Length = 378 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 171/344 (49%), Gaps = 6/344 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + R E++ M E + + +++ Y KQ D+ +I Sbjct: 26 DLENKRKRILELDRMMEEPDFWTDPERANRLSTENHHLKNELESYQSLKQSYDDIGALIE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E + E+ + E E + ++ LL D + IL + AG GG+EA Sbjct: 86 M--GVEEGDESVIPEIRELLSEFSEKLDSMSTQLLLSGEYDAMNAILRLNAGAGGTEAND 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L+RMY R+A R + +++L + ++ G K + I G + ++ ESG+HR+ R Sbjct: 144 WAGMLYRMYTRWAERRGFGIKILDYLEGEEAGIKSVTMEIDGDYAYGYLRSESGIHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A G+ TS + V+P+ +IDVDI EDI+++ R+SG+GGQH+N T SAVR+ Sbjct: 204 ISPFNAQGKRQTSFVSCDVMPDIETDIDVDIREEDIKMEVFRSSGAGGQHINKTSSAVRL 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG +V E+SQ QNR +AM++L+A+LY E++ + + R ++ + Sbjct: 264 IHIPTGFVVACQEERSQLQNRQKAMQMLKAKLYIKEKEEQEAKLAGIR-GEVKDNGWGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y R + D R + VL G ID I L Q Sbjct: 323 IRSYVLQPYRMVKDLRTGEETGNTDAVLDGDIDRFITAYLKWVQ 366 >gi|225077011|ref|ZP_03720210.1| hypothetical protein NEIFLAOT_02063 [Neisseria flavescens NRL30031/H210] gi|261379582|ref|ZP_05984155.1| peptide chain release factor 2 [Neisseria subflava NJ9703] gi|224951568|gb|EEG32777.1| hypothetical protein NEIFLAOT_02063 [Neisseria flavescens NRL30031/H210] gi|284798056|gb|EFC53403.1| peptide chain release factor 2 [Neisseria subflava NJ9703] Length = 367 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVVTLDNIATGIEDNRMLIEMAVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|40063231|gb|AAR38058.1| peptide chain release factor 2 [uncultured marine bacterium 577] Length = 359 Score = 222 bits (565), Expect = 6e-56, Method: Composition-based stats. Identities = 114/344 (33%), Positives = 178/344 (51%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R EI + +L E + I+ + + Q+ DL + Sbjct: 22 DAKKERSDEISFLEEDPEIWKDSKRAQELGREKKILDKIVLTLETIKLQLQDSIDLFQMA 81 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + A ++ + + + + D +C LEI++G+GG+EA Sbjct: 82 KEEND-----IVVLESIRADAAKLETNVANMEFCNMFSNPMDPNNCFLEIQSGSGGTEAQ 136 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RY R +KVEVL S + G K ISG + ++ ESG+HR+ Sbjct: 137 DWAAMLERMYLRYCERRDYKVEVLEESSGEVAGIKSASLKISGDYAYGYLRTESGIHRLV 196 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS A+V + PE I+++I D+R+DT RASG+GGQH+N TDSA+R Sbjct: 197 RKSPFDSGSRRHTSFASVFIYPEVDDTIEIEINPADLRVDTYRASGAGGQHINKTDSAIR 256 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH P+GI+V +++SQH+NR AM +L++RLY+VE ++ ++E+ + K IG G Sbjct: 257 ITHNPSGIVVSCQNDRSQHRNRAEAMAMLKSRLYEVELRKQSDEKQAMEDSKTDIGWG-- 314 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R L + + VL G +D+ I L Sbjct: 315 -HQIRSYVLDQSRIKDLRTGLEIGNTQGVLDGGLDEFIKTSLKQ 357 >gi|292669366|ref|ZP_06602792.1| peptide chain release factor RF2 [Selenomonas noxia ATCC 43541] gi|292649001|gb|EFF66973.1| peptide chain release factor RF2 [Selenomonas noxia ATCC 43541] Length = 368 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 172/350 (49%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 +I + + AE+E +M E D KL +E A + + K ++ Sbjct: 19 MRISLEIPAKEEKIAELEYKMGEPSFWDDAAAAQKLNQELADLKGGVDTYRDLVAKYEDA 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L+ + G +D+ + + E+ I + + L +L D IL + AG Sbjct: 79 ETLYEM-GIEENDASMEADIRAELTLISEGLETL----QLEVLLSGEYDANDAILTLHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EA + L RMY R+A + V+ D+ G K I G + +K E Sbjct: 134 AGGTEAQDWTQMLLRMYGRWAERHGFTVDTADLQPGDEAGVKSATLFIKGHNAYGFLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++ R HTS + V+PE + ++D+R+D RASG+GGQH+N Sbjct: 194 KGVHRLVRISPFDSQARRHTSFSACDVMPEIDDAVEVPINMDDVRVDYFRASGAGGQHIN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T SAVR+TH PTGI+V +E+SQ QN+ + +K+LRA+L+++E+++ E + +Q Sbjct: 254 KTSSAVRMTHEPTGIVVQCQNERSQLQNKEQCLKMLRAKLFELEQEKKEEEIARLEGVQQ 313 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R N ++ V+ G ID I L A Sbjct: 314 K-IEWGSQIRSYVFQPYTMVKDVRTNAETGNVQAVMDGDIDPFIRAYLNA 362 >gi|326389631|ref|ZP_08211197.1| peptide chain release factor 2 [Thermoanaerobacter ethanolicus JW 200] gi|325994346|gb|EGD52772.1| peptide chain release factor 2 [Thermoanaerobacter ethanolicus JW 200] Length = 330 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 173/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ K L ++ A+ ++ + + K ++ L + D +S ++ Sbjct: 1 MSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLNTLIELGLDEGDESITDEVD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K + L D + IL I AG+GG+EA + L RMY R+ Sbjct: 61 KEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++VE L ++ G K + I G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SAVRITH+PTGI+V Sbjct: 176 SFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 SERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + ++ V+ G ID IN L Sbjct: 295 KDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 324 >gi|255926563|gb|ABG86573.2| peptide chain release factor 2 [Clostridium perfringens SM101] Length = 364 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 111/340 (32%), Positives = 174/340 (51%), Gaps = 9/340 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG- 67 + L+ + AE+EL+M E+ D K E + KI + + D+ + Sbjct: 28 LASLEKKSAELELKMQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKEL 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +D E EV A+ KEI L + D + IL + G GGS+A Sbjct: 88 MEENDEETAKEIISEVKALSKEIDTL----KIETILSGEYDRNNAILTLHTGVGGSDAND 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + + +E + D+ G K + + G + +K E G+HR+ R Sbjct: 144 WTEMLLRMYTRWCEKKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRI Sbjct: 204 ISPFNANGKRQTSFASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ NR AM +L+++L +++ +R E+ + ++ + Sbjct: 264 THIPTGIVVQCQNERSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQ 322 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IR+Y F + DHR N+ + V+ G ID+ I L Sbjct: 323 IRSYVFHPYSMVKDHRTNVETSNVNGVMGGDIDNFIIAYL 362 >gi|162447197|ref|YP_001620329.1| peptide chain release factor RF-2 [Acholeplasma laidlawii PG-8A] gi|189039998|sp|A9NF23|RF2_ACHLI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|161985304|gb|ABX80953.1| peptide chain release factor RF-2 [Acholeplasma laidlawii PG-8A] Length = 365 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 186/348 (53%), Gaps = 12/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + NR EIE M+ + + + ++ + K + + +D + Sbjct: 25 DLDAINNRLKEIEPIMANPNFWNDSNQAKKISQELNQLTEKKQTITSIQNQYEDALMWLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +E D+ + E+ +++K+I E E +L D + ILE+ G GG+E+ Sbjct: 85 EAKEGTESWDILEAEIDSLQKKISEFE----IEVLLNGEYDHNNAILELHPGAGGTESMD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RMYER+A + +KVE+L+ ++ G K + ISG + +K E GVHR+ R Sbjct: 141 WCGILMRMYERFAGYKGYKVEILNYLAGEEAGVKSVTLRISGPYAYGNLKSERGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS + V +V++ +DIR+DT ++SG+GGQ VNTT SAVR+ Sbjct: 201 ISPFDSNKRRHTSFVSCDVAPEIDETSEVELKDDDIRMDTFQSSGAGGQSVNTTYSAVRL 260 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V +E+SQ +N+ AM++L+++L E + + +A + K IG G Sbjct: 261 THIPTGIVVNIQNERSQIKNKEAAMQILKSKLIQKELEEKQAKLNALKGEKSDIGWG--- 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F + + DHR N + ++ V+ G ID IN L + + Sbjct: 318 SQIRSYVFQPYQMVKDHRTNYEVGNIQSVMDGDIDGFINAYLKSKAYE 365 >gi|303241850|ref|ZP_07328345.1| peptide chain release factor 2 [Acetivibrio cellulolyticus CD2] gi|302590625|gb|EFL60378.1| peptide chain release factor 2 [Acetivibrio cellulolyticus CD2] Length = 340 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 180/340 (52%), Gaps = 10/340 (2%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDS 73 E+E + SE + + I + K+ Y++ QE +D T+ +G D Sbjct: 5 IEELEQKASEPDFWNDIENSQKVLQKIKTMKEKLERYNRLTQEWEDAKTLCELGLEEDDE 64 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + + +K+ EL L D + IL + AG GG+EA +V L Sbjct: 65 SVFTEVEDSFKKFKKDFEEL----RLETLLIGPYDKNNAILTLHAGAGGTEAQDWVQMLL 120 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RM+ R+ + + V +L D ++ G K + + G + +K E GVHR+ R+ +A Sbjct: 121 RMFTRWGESKGFTVRILDYLDGEEAGIKSVTINVIGENAYGYLKSEKGVHRLVRISPFDA 180 Query: 194 SGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 SGR HTS A+ V+PE + +++V+I +D+RIDT RASG+GGQH+N T+SA+RITHIPTG Sbjct: 181 SGRRHTSFASCDVMPELSDDVEVNINPDDLRIDTYRASGAGGQHINKTESAIRITHIPTG 240 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 ++V +E+SQ QN+ AM++L+++L +++ + + + +Q+ +IR+Y F Sbjct: 241 VVVACQTERSQFQNKDTAMRMLKSKLLEIKEREQKEKIEDLKGIQM-DIAWGSQIRSYVF 299 Query: 312 SQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N ++ V+ G +D IN L ++ Sbjct: 300 CPYTLVKDHRTNYEQINVDNVMDGDLDGFINSYLVFSNSE 339 >gi|148270343|ref|YP_001244803.1| peptide chain release factor 2 [Thermotoga petrophila RKU-1] gi|166225119|sp|A5IM04|RF2_THEP1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|147735887|gb|ABQ47227.1| bacterial peptide chain release factor 2 (bRF-2) [Thermotoga petrophila RKU-1] Length = 367 Score = 222 bits (565), Expect = 7e-56, Method: Composition-based stats. Identities = 105/336 (31%), Positives = 177/336 (52%), Gaps = 8/336 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ EIE ++++ D K E + + + + + +DL I Sbjct: 27 NEVDREIEEIEKKLTDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELS 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D E+ + V +E +++LE ++ D + L + G GG+E+ + Sbjct: 87 DEDQEMAQHVEEIVQELEGAVKKLEL----EIILNGKYDPNNAYLSVHPGAGGTESQDWA 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + VE++ ++ G K+ I G + +K ESGVHR+ R+ Sbjct: 143 QMLLRMYMRWAERKGFDVEIVEFQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRIS 202 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V V+PE + D++I ED++I+T RASG GGQ+VN T+SAVRITH Sbjct: 203 PFDAARRRHTSFASVNVIPEIDDDVDIEIRPEDLKIETFRASGHGGQYVNKTESAVRITH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQHQN+ A+K+L+A+LY +E ++ E + ++ +IR Sbjct: 263 LPTGIVVSCQNERSQHQNKQTALKILKAKLYQLEMEKKQREIQEI-QGELKDISWGNQIR 321 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINP 342 +Y F + DHR + ++ V+ G ID I Sbjct: 322 SYVFHPYTMVKDHRTGVETANVDAVMDGDIDMFIEA 357 >gi|94984716|ref|YP_604080.1| peptide chain release factor 1 [Deinococcus geothermalis DSM 11300] gi|119361533|sp|Q1J0S3|RF1_DEIGD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|94554997|gb|ABF44911.1| peptide chain release factor 1 [Deinococcus geothermalis DSM 11300] Length = 370 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 138/362 (38%), Positives = 211/362 (58%), Gaps = 14/362 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 +S ++ +L F +E + + + Y +LT + ++PI++ + + Sbjct: 1 MVSQ-RLEELAAEFGLVERALGDPAMLADPREYARLTRRHRELTPIVTLYREHAVLSSDL 59 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + ++ D ++R+LAQ E+ ++ + ++E E+ LLLP D DD K+ ILE+RAG Sbjct: 60 EGARELLA----DPDMRELAQGEIESLSARLAQIEAELEVLLLPTDPDDAKNVILELRAG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EAALF DL RMY RYA K+ VL +S++D GG ++VA ++G F K+E Sbjct: 116 AGGAEAALFAVDLLRMYTRYAEGAGLKLNVLDASESDLGGASKVVAEVTGEFAFRAFKWE 175 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVPATE+ GR+HTS TVAVLPEA + +V + ++RID R+ G+GGQ VNT Sbjct: 176 RGVHRVQRVPATESQGRIHTSTVTVAVLPEAEQGEVSVDPSEVRIDVFRSQGAGGQGVNT 235 Query: 240 TDSAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 TDSAVR + P ++V +SQ +NR +A+ VL +RL + ER R Sbjct: 236 TDSAVRAVYRPGTPDEIVVVCQDSRSQIKNREKALVVLASRLAERERAAREERERETRAA 295 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMIG 353 Q+G+G+RSE+IRTYN+ Q R+TDHR+ L+ V+ G + I+ L + + + Sbjct: 296 QVGTGERSEKIRTYNYPQNRVTDHRLEGDAKNFALDSVMAGGLAPIVAALSRDERERQLL 355 Query: 354 SA 355 Sbjct: 356 EL 357 >gi|332686413|ref|YP_004456187.1| peptide chain release factor 2 [Melissococcus plutonius ATCC 35311] gi|332370422|dbj|BAK21378.1| peptide chain release factor 2 [Melissococcus plutonius ATCC 35311] Length = 328 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 176/328 (53%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + + + + K ++Q E ++L + D + + Q E Sbjct: 1 MADVNFWNNAKQAQQIINETNREKEKYQQFNQLADELEELEIMYELQQVDFD--EAIQTE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ K++ + LL D + I+E G GG+E+ + L RMY R+A Sbjct: 59 LIQRIKQLEKQLKTYELALLLNGPYDKNNAIVEFHPGAGGTESQDWGSMLLRMYMRWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +++EVL D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 RNFQIEVLDYQAGDEAGIKSVTLLIKGYNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V ++PE I++DI +D+++DT RASG+GGQH+N T+SAVRITHIPT +V + +++ Sbjct: 179 SVDIMPELDETIEIDINPDDLKVDTYRASGAGGQHINKTESAVRITHIPTSTVVSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR +AMK L+++LY +E ++ A E + R Q+ G +IR+Y F + DH Sbjct: 239 SQLKNREQAMKTLKSKLYQLEMEKKAQESAELRGEQLEIG-WGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N+ ++ V+ G ID+ I+ L Sbjct: 298 RTNMETGNVQAVMDGEIDNFIDAYLKWQ 325 >gi|320355124|ref|YP_004196463.1| peptide chain release factor 2 (bRF-2) [Desulfobulbus propionicus DSM 2032] gi|320123626|gb|ADW19172.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfobulbus propionicus DSM 2032] Length = 369 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 114/354 (32%), Positives = 180/354 (50%), Gaps = 14/354 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +V H + + + +E + D + + + I ++++ + + Sbjct: 22 LVLKEHLDLDGKREQVELLERQTVSPNFWDNQSEAKRVQRQLGQLQDLIGVWEKNFGDLE 81 Query: 61 DLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D ++ +D + + + + + +E E D + IL I A Sbjct: 82 DAEMLLDMAREENDQDTYQEVVSGLDDLRRRVELVELECM----FSGEHDANNAILTIHA 137 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+EA +VG L RMY R+A + +K ++L D+ G K + + G+ + ++ Sbjct: 138 GAGGTEAQDWVGILLRMYLRWAESKGFKADILDLLPGDEAGTKSVTIMVKGKYAYGYLRS 197 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHV 237 E G+HR+ R+ +ASGR HTS A+V V+PE +++++I +DIRIDT RASGSGGQHV Sbjct: 198 EVGIHRLVRISPFDASGRRHTSFASVMVMPELDDDVEIEINDKDIRIDTYRASGSGGQHV 257 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA--NERSANRK 294 N TDSA+RITH PTGI+V +E+SQH N+ AMK+L ARLY+ E++ E K Sbjct: 258 NKTDSAIRITHFPTGIVVQCQNERSQHSNKATAMKMLMARLYEREKEEQQRTQENIQGDK 317 Query: 295 LQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +I G +IR+Y R I DHR N ++ VL G +D I L Sbjct: 318 KEIAWG---SQIRSYVLQPYRLIKDHRTNTEEGNVDAVLDGRLDPFIKAYLLWQ 368 >gi|315092115|gb|EFT64091.1| peptide chain release factor 1 [Propionibacterium acnes HL110PA4] Length = 379 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 202/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 19 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 78 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 79 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 131 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 132 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 191 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 192 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 251 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 252 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 311 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNFSQ R+TDHRI KL+ +L G + D+++ L + + Sbjct: 312 RDQVRTVDRSARVRTYNFSQNRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 371 Query: 354 SASE 357 E Sbjct: 372 QRPE 375 >gi|52082063|ref|YP_080854.1| peptide chain release factor 2 [Bacillus licheniformis ATCC 14580] gi|52787452|ref|YP_093281.1| hypothetical protein BLi03772 [Bacillus licheniformis ATCC 14580] gi|319647929|ref|ZP_08002147.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2] gi|52005274|gb|AAU25216.1| peptide chain release factor 2 [Bacillus licheniformis ATCC 14580] gi|52349954|gb|AAU42588.1| PrfB [Bacillus licheniformis ATCC 14580] gi|317390270|gb|EFV71079.1| peptide chain release factor 2 [Bacillus sp. BT1B_CT2] Length = 327 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 111/328 (33%), Positives = 168/328 (51%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ K + + ++ Y + ++L D + ++ Sbjct: 1 MADPDFWGDQQKAQTIINEANALKDYVNTYKSLSESHEELQMTHDLLKEDPDQDLQNELV 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E E+ L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 NELKSLTKQFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE E D++I EDI++DT RASG+GGQHVNTTDSAVRITH+PTG++V +E+ Sbjct: 179 SCDVMPEFNEEIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTGVIVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+++LY + + R Q IG G +IR+Y F + Sbjct: 239 SQIKNRERAMKMLKSKLYQRRIEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYSLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDIDSFIDAYLR 323 >gi|325266606|ref|ZP_08133283.1| peptide chain release factor RF2 [Kingella denitrificans ATCC 33394] gi|324982049|gb|EGC17684.1| peptide chain release factor RF2 [Kingella denitrificans ATCC 33394] Length = 367 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 173/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + + +E + I+ + + + ++L ++ + Sbjct: 32 KKERLEEVVGLSEDPELWNDPKRAQDIGKERKLLEGIVLTLENIENGIADNRELIDMVVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + ++A + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 END-----EDGFAAIVADVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L RMY RYA + +KVEV+ D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLLRMYLRYAERKGFKVEVVEQDDGEIAGINNATIRLEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE +V+I D+R DT RASG+GGQH+N TDSAVR+T Sbjct: 207 SPFDSNNKRHTSFASVFVYPEVDDSFEVEINPADVRTDTYRASGAGGQHINKTDSAVRMT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTGI+V + + +SQH+NR ++LRA+L+++E ++ E+ A K +G G Sbjct: 267 HIPTGIVVQSQNSRSQHENRRVCEEMLRAKLFELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|326692249|ref|ZP_08229254.1| peptide chain release factor 2 [Leuconostoc argentinum KCTC 3773] Length = 333 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 181/328 (55%), Gaps = 5/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ES D +K + + + ++ + + +++ +I + D E D A Sbjct: 1 MTESGFWDDNVKAQKVIEENNILKNRRDSFLNLTNQAEEIAVLIEMLSEDPEDEDTAAEL 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++EK +++E LL + D + + ILE+ G+GG+E+ + +L+RMY R+A Sbjct: 61 AASVEKVQKDVEAYNLEQLLTEPYDAN-NAILEVHPGSGGTESTDWGANLYRMYTRWAQQ 119 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VEVL D+ G ISG + ++ E GVHR R+ +++GR HTS Sbjct: 120 HGFQVEVLDYHAGDEAGIDSATIKISGHNAYGFLRSEKGVHRFVRISPFDSAGRRHTSFV 179 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V++ +DI++D R+ G+GGQ+VN + VR+TH PTGI+V+S+ E+ Sbjct: 180 SVDVMPELDDTIEVEVRDDDIKMDVFRSGGAGGQNVNKVSTGVRLTHEPTGIVVSSTVER 239 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDH 319 +Q+ NR AM++L+ +LY +E ++ A ER+A ++ +G +IR+Y + + DH Sbjct: 240 TQYGNRDYAMRLLKGKLYQLELEKQAAERAALTGEKMENG-WGSQIRSYVLHPYQMVKDH 298 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N + + VL G +D IN L Sbjct: 299 RTNYETNQPQQVLDGDLDPFINAYLQWQ 326 >gi|308271179|emb|CBX27788.1| Peptide chain release factor 2 [uncultured Desulfobacterium sp.] Length = 344 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 118/350 (33%), Positives = 189/350 (54%), Gaps = 16/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 + + + R EIE +S+ + + K T +E IS + + +E + L++ Sbjct: 3 DLDNKEKRLNEIEFLISKDNFWENHDKATPLLKERTFISGKVESFKSLLKDLEECEILYS 62 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + I +++ EK + ++ LL+ DD + I+ I AG GG+E Sbjct: 63 LAIEESDSKTIEEVSVQIQKLKEKINK-----LSLLLMLDGEDDINNAIVSINAGAGGTE 117 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + LFRMY R+ + +K ++ D+ G K + T+ G + +K E GVHR Sbjct: 118 AQDWSEILFRMYSRWIEKKGFKSTIIDFQPGDEAGIKSVTITVEGDYAYGYLKTEIGVHR 177 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+G+ HTS A+V V PE I++DI +D+RID R+SG+GGQHVN T SA Sbjct: 178 LVRISPFNANGKRHTSFASVFVYPELDNSIEIDIDEKDLRIDIFRSSGAGGQHVNKTSSA 237 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 +RITH+PTGI+V E+SQH+N+ AM VL++RLY +E+++ ++ K +I G Sbjct: 238 IRITHLPTGIVVQCQQERSQHKNKDMAMSVLKSRLYQLEKQKQDDKMQEIHDGKDEIAWG 297 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + +IR+Y + I DHRINL VL G ID I +L + +A Sbjct: 298 N---QIRSYVLHPYQLIKDHRINLETGNAAAVLDGAIDPFIEGVLLSRKA 344 >gi|254487153|ref|ZP_05100358.1| peptide chain release factor 2 [Roseobacter sp. GAI101] gi|214044022|gb|EEB84660.1| peptide chain release factor 2 [Roseobacter sp. GAI101] Length = 374 Score = 222 bits (565), Expect = 8e-56, Method: Composition-based stats. Identities = 118/333 (35%), Positives = 174/333 (52%), Gaps = 5/333 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I+ Y+ KQE D +I +++ Sbjct: 31 RLEEFNARVEDPNLWDDPDAAQKLMRERQALVDSIATYEGIKQELADHVELIEMGEMEND 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +A+ E + E+ LL + + LEI AG GG+E+ + L R Sbjct: 91 AEVVAEAEAALKALAETAAQKELEALLDGEADSN--DTFLEINAGAGGTESCDWANILAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSESAGEEAGIKSATYKISGLNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P I++D+ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIEIDVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R N + VL G +D ++ L Sbjct: 328 YQMVKDLRTNFETSDTKGVLDGDLDGLMGAALA 360 >gi|241760713|ref|ZP_04758805.1| peptide chain release factor 2 [Neisseria flavescens SK114] gi|241318894|gb|EER55420.1| peptide chain release factor 2 [Neisseria flavescens SK114] Length = 367 Score = 221 bits (564), Expect = 8e-56, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVVTLDNIATGIEDNRMLIEMAVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|315641246|ref|ZP_07896323.1| peptide chain release factor RF2 [Enterococcus italicus DSM 15952] gi|315483013|gb|EFU73532.1| peptide chain release factor RF2 [Enterococcus italicus DSM 15952] Length = 340 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 113/341 (33%), Positives = 178/341 (52%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT---VIGD 68 ++ AE E RM+E D + + + + E ++L +I + Sbjct: 1 MEEDIAEAENRMAEPGFWDDTQSAQKVINENNSNKEAFDQFHELADELEELEVLLEMIQE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D ++LA + K +L D + I+E+ G GG+E+ + Sbjct: 61 EPDDEMEQELATRASELLGKMSA-----YELAMLLDGPYDHNNAIIELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R+A R ++VE L D+ G K + I GR F +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWADKRGFQVETLDYLPGDEAGIKSVTLLIKGRNAFGYLKSEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS +V V+PE ID++I +D++IDT RASG+GGQH+N T+SAVRIT Sbjct: 176 SPFDSANRRHTSFCSVDVMPELDDTIDIEINSDDLKIDTYRASGAGGQHINKTESAVRIT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG +V + +++SQ +NR +AM +L+A+LY +E ++ E +A R Q+ G +I Sbjct: 236 HIPTGTVVASQAQRSQLKNREQAMGMLKAKLYQLEVEKQEQEAAALRGEQMEIG-WGSQI 294 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y F + DHR N ++ V+ G ID I+ L Sbjct: 295 RSYVFHPYSMVKDHRTNFETGNVQAVMDGDIDGFIDAYLKQ 335 >gi|312796706|ref|YP_004029628.1| peptide Chain Release Factor 2 (RF-2) [Burkholderia rhizoxinica HKI 454] gi|312168481|emb|CBW75484.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Burkholderia rhizoxinica HKI 454] Length = 320 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 105/321 (32%), Positives = 170/321 (52%), Gaps = 12/321 (3%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 L E + ++ +S + + Q+L + + D + + + Sbjct: 6 KQAQALGREKKLLDAVVQMLSALNGDLTDTQELFELASEEQDDDTLLACERD-----VQA 60 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + +I + + + D +C ++I+AG GG+EA + L R Y RY + +K EV Sbjct: 61 LERRVADIEFRRMFNNPADPNNCFVDIQAGAGGTEAQDWASMLLRQYLRYCERKGFKAEV 120 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L SD + G K + G + ++ E+G+HR+ R ++SG HTS ++V V PE Sbjct: 121 LEQSDGEVAGIKNATIKVEGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPE 180 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E D+D+ D+RIDT RASG+GGQH+N TDSAVRITH+P+GI+V +++SQH+NR Sbjct: 181 VDESIDIDVNPADLRIDTFRASGAGGQHINKTDSAVRITHLPSGIVVQCQNDRSQHRNRA 240 Query: 268 RAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 AM +L++RLY+ E ++ E+ + K +G G +IR+Y Q R+ D R N+ + Sbjct: 241 EAMAMLKSRLYEAEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEI 297 Query: 326 YKLEYVLQGYIDDIINPLLTA 346 VL G +DD I+ L Sbjct: 298 SNTRAVLDGDLDDFISASLKQ 318 >gi|227356361|ref|ZP_03840749.1| peptide chain release factor 2 [Proteus mirabilis ATCC 29906] gi|227163471|gb|EEI48392.1| peptide chain release factor 2 [Proteus mirabilis ATCC 29906] Length = 320 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 176/324 (54%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ I+ I +Q ++ L + + D E + A E+ + Sbjct: 3 NEPEKAQALGKERSSLEAIVETIDQLEQGLEDVSGLLDLAVEA-DDEETFNEAVAELEGL 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 K++ +LE + + D C L+++AG+GG+EA + L RMY R+A R +K Sbjct: 62 NKKLEQLE----FRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESRGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ SD D G K I G + ++ E+GVHR+ R ++ GR HTS ++ V Sbjct: 118 TEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE ID++I D+RID RASG+GGQHVN T+SAVRITH+PTG++ +++SQH+ Sbjct: 178 YPEVDDNIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHVPTGLVTQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK ++A+LY++E ++ ++ + K IG G +IR+Y RI D R Sbjct: 238 NKDQAMKQMKAKLYELEMQKKNADKQVMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D I L A Sbjct: 295 VETRNTQAVLDGDLDKFIEASLKA 318 >gi|192358804|ref|YP_001982940.1| peptide chain release factor 2 [Cellvibrio japonicus Ueda107] gi|190684969|gb|ACE82647.1| peptide chain release factor 2 [Cellvibrio japonicus Ueda107] Length = 329 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 171/334 (51%), Gaps = 15/334 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 EL ++ES D L E +++ ++ I D + +L + + N +S + Sbjct: 2 ELELAESSVWDNPERAQALGRERSSLEIVVKTIESLDSGVADCGELLDMAVEENDESMVA 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ A + + + + + D + L+I++G+GG+EA + + RMY Sbjct: 62 DVQ-----AEIDRLEKELGVLEFRRMFSGETDPNNAYLDIQSGSGGTEAQDWAEMVLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+ + +KV + S + G K G F ++ E+GVHR+ R ++ R Sbjct: 117 LRWGEAKGFKVTLEECSAGEVAGIKSATIYFEGEYAFGWLRTETGVHRLVRKSPFDSGNR 176 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS +V V PE + +++I D+RIDT RASG+GGQHVN TDSA+RITHIP+GI+V Sbjct: 177 RHTSFCSVFVSPEIDDNIEIEINPADLRIDTYRASGAGGQHVNKTDSAIRITHIPSGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFS 312 +E+SQH NR +A K+LRAR+Y+ E + E+ + K IG G +IR+Y Sbjct: 237 QCQNERSQHANRDKAYKMLRARMYEQEMLKRNAEKQAMEDSKSDIGWG---SQIRSYVLD 293 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+ D R + + VL G +D I L A Sbjct: 294 DSRVKDLRTGVQTSNTQAVLDGDLDQFIVESLKA 327 >gi|167038149|ref|YP_001665727.1| peptide chain release factor 2 [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166856983|gb|ABY95391.1| peptide chain release factor 2 [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 330 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 113/330 (34%), Positives = 173/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ K L ++ A+ ++ + + K ++ L + + +S ++ Sbjct: 1 MSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLSTLIELGLEEGDESITDEVD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K + L D + IL I AG+GG+EA + L RMY R+ Sbjct: 61 KEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++VE L ++ G K + I G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SAVRITH+PTGI+V Sbjct: 176 SFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 SERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + ++ V+ G ID IN L Sbjct: 295 KDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 324 >gi|229829544|ref|ZP_04455613.1| hypothetical protein GCWU000342_01640 [Shuttleworthia satelles DSM 14600] gi|229791533|gb|EEP27647.1| hypothetical protein GCWU000342_01640 [Shuttleworthia satelles DSM 14600] Length = 379 Score = 221 bits (564), Expect = 9e-56, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 167/345 (48%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + E+ M + + +E ++ + +E L Sbjct: 27 DLESKHQKIEELNREMEAPDFWNDADLSARKMKELKSLKDDVEIADKLKNSIEEIGMLMD 86 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + ++ + E + L D + I+ + AG GG+E Sbjct: 87 MANEEDDADMVGEIRLMMDQMKEDF-----ERVRIKTLLSGEFDANNAIVTLHAGAGGTE 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+AA + ++VE L D D+ G K + ++G + +K E GVHR Sbjct: 142 ACDWTAMLYRMYTRWAAAQGFEVEELDYLDGDEAGIKAVTFQVNGENAYGYLKSEKGVHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+G+ TS ++ V+PE ++DV++ EDIRIDT R+SG+GGQH+N T SA Sbjct: 202 LVRISPFNANGKRQTSFSSCDVMPELEQDLDVEVKDEDIRIDTYRSSGAGGQHINKTSSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH PTGI+V +E+SQH N+ +AM++L+A+LY ++ + + R ++ Sbjct: 262 IRITHFPTGIVVQCQNERSQHMNKDKAMQMLKAKLYMLKMEEQKAKAEGIR-GEVTDIAW 320 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + D R + V+ G I+ IN L Sbjct: 321 GNQIRSYVFQPYTMVKDLRTGEETGNVSAVMDGDINLFINAYLRW 365 >gi|289435770|ref|YP_003465642.1| peptide chain release factor RF-2 [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172014|emb|CBH28560.1| peptide chain release factor RF-2 [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 327 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDITAYMATINA-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNRDQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|126726324|ref|ZP_01742165.1| peptide chain release factor 2 [Rhodobacterales bacterium HTCC2150] gi|126704187|gb|EBA03279.1| peptide chain release factor 2 [Rhodobacterales bacterium HTCC2150] Length = 375 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 177/347 (51%), Gaps = 9/347 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E + + K + ++ + Y++ Q+ D +I + D Sbjct: 31 RLEEFNALTEDPNLWNDPEKAQKLMRDRQLLLDAYNNYNKLAQDLADNVELIELGEMEDD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 ++ A+ + ++ + + E L D LEI +G GG+E+ + L Sbjct: 91 EDVVAEAEAGLRSVVEIAAKKEL----EALLNGEADSNDTFLEINSGAGGTESCDWANML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R +KVE+ S + ++ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEARGYKVELQSETAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS +++ V P ID+++ DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFSSIWVYPVVDDNIDIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENK-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R N+ + VL G +D + L + A + ++ Sbjct: 326 QPYQMVKDLRTNVETSDTKGVLDGDLDQFMAATLALNVAGKSRAEAQ 372 >gi|325291337|ref|YP_004267518.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobotulus glycolicus DSM 8271] gi|324966738|gb|ADY57517.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobotulus glycolicus DSM 8271] Length = 371 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 118/374 (31%), Positives = 194/374 (51%), Gaps = 26/374 (6%) Query: 1 MVFLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISP 44 M+ K+I +L R A++ E ++ D + ++ Sbjct: 1 MLADWKKEIENLVARLADLRVSLDVPAREVKIGQLEEELNRPDFWDDRSNAQKIMQELTG 60 Query: 45 IISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 K++++ + K E +DL + + DS + D ++ I + ELE +L Sbjct: 61 NKDKVALFGELKTETEDLEVLWQMAMEEDDSSLEDEIVKDIHRIRAQYDELEL----EIL 116 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D + I+ + +G GG+EA +V L+RMY R+ R++KVE L ++ G K Sbjct: 117 LSGEYDRNNAIITLHSGAGGTEAQDWVQMLYRMYLRWGERRRYKVETLDLLPGEEAGIKS 176 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLED 221 + +++G F K E GVHR+ R+ ++SGR HTS A+V V+PE +++++I ED Sbjct: 177 VTFSLAGENAFGYAKCEKGVHRLVRISPFDSSGRRHTSFASVDVIPEVNEDMEINIDSED 236 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +++DT R+ G+GGQHVN TDSAVRITHIP+GI+V SE+SQ QNR M++L+A+L ++ Sbjct: 237 LKVDTYRSGGAGGQHVNKTDSAVRITHIPSGIIVQCQSERSQIQNRAYCMRILQAKLLEL 296 Query: 281 ERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDI 339 +RK+ E R ++ +IR+Y F + DHR N + V+ G ID Sbjct: 297 KRKQQEEELLEIR-GELNDIAWGSQIRSYVFHPYSMVKDHRTNTETGNVNSVMDGEIDLF 355 Query: 340 INPLLTAHQAKMIG 353 I+ L + K + Sbjct: 356 ISAYLKQNARKAVA 369 >gi|315499977|ref|YP_004088780.1| peptide chain release factor 2 [Asticcacaulis excentricus CB 48] gi|315417989|gb|ADU14629.1| peptide chain release factor 2 [Asticcacaulis excentricus CB 48] Length = 373 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 165/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D + E +S + ++ ++ Q+ D + Sbjct: 30 RRLDELNARVEDPTLWDKPEEAQSVMRERTKLSGGVDAVNSLTKELQDALDYAELADMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + A+ K I+E L D +EI +G GG+E+ + G Sbjct: 90 DEELLEEAR-----AMLKAIKEKAARAELEALLSGEADGNDAYVEINSGAGGTESCDWAG 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A V + + + G K + G + +K E+GVHR+ R+ Sbjct: 145 ILLRMYTRWATQHGMTVSIEEETPGEQAGIKSATIMVKGTNAYGWLKTEAGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V P + +DI D+R DT RASG+GGQHVN TDSAVR+THI Sbjct: 205 FDSNARRHTSFASVWVYPVVDDTIVIDINPADVRTDTYRASGAGGQHVNKTDSAVRLTHI 264 Query: 250 PTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 PTGI + + +SQH NR A K+LRARLY++E ++ ++ ++K IG G +I Sbjct: 265 PTGIAVACQAGRSQHANRDEAWKMLRARLYELELQKREAAQAALEDQKTDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R ++ + VL G +D + L Sbjct: 322 RSYVLQPYQMVKDLRTDVETSDSQGVLDGDLDAFMGASLAQR 363 >gi|116873873|ref|YP_850654.1| peptide chain release factor 2 [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742751|emb|CAK21875.1| peptide chain release factor 2 [Listeria welshimeri serovar 6b str. SLCC5334] Length = 327 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKIINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQAELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDITAYMATINE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNRDQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|282853790|ref|ZP_06263127.1| peptide chain release factor 1 [Propionibacterium acnes J139] gi|282583243|gb|EFB88623.1| peptide chain release factor 1 [Propionibacterium acnes J139] Length = 361 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 130/364 (35%), Positives = 201/364 (55%), Gaps = 14/364 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQ 57 M + + I +++ EIE ++++ + +L + +A + ++S DQ + Sbjct: 1 MSESAQQAIDEVRRCLREIETQLADFAVLSDPSAMGRLGKRHARLRHVVSVADRVDQLRA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + + + ++ E LL P D D + ++EI Sbjct: 61 DVEAAEDL--TEEDPAFGLEAERLRGQLDLASTELTE-----LLAPSDPLDQEDALVEIH 113 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI---SGRGVFS 174 +G GG E+ALF DL RMY RYA W V L+S D GGY+ +V + R + Sbjct: 114 SGEGGEESALFAADLLRMYIRYAERVGWSVRELTSEPTDLGGYRTVVIAVAGVPLRPAYG 173 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +K E GVHRVQRVP TE+SGR+HTSA V V+P+ E +VDI +IR+D R+SG GG Sbjct: 174 YLKHEGGVHRVQRVPVTESSGRIHTSAVGVLVMPDVDETEVDIDPAEIRVDVYRSSGPGG 233 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+ TGI+V +E+SQ QN+ AM++LRA++ + ++ A+E R Sbjct: 234 QGVNTTDSAVRLTHLSTGIVVSCQNERSQLQNKAEAMRMLRAKVAALAAQQAADENDRMR 293 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRS R+RTYNF + R+TDHRI KL+ +L G + D+++ L + + Sbjct: 294 RDQVRTVDRSARVRTYNFPENRLTDHRIGYKSRKLDQILAGDLGDVLDALHADEVRRRMA 353 Query: 354 SASE 357 E Sbjct: 354 QRPE 357 >gi|261401531|ref|ZP_05987656.1| peptide chain release factor 2 [Neisseria lactamica ATCC 23970] gi|269208367|gb|EEZ74822.1| peptide chain release factor 2 [Neisseria lactamica ATCC 23970] Length = 367 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVKEDVVGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|161871001|ref|YP_001600181.1| peptide chain release factor 2 [Neisseria meningitidis 053442] gi|161596554|gb|ABX74214.1| peptide chain release factor 2 [Neisseria meningitidis 053442] Length = 352 Score = 221 bits (564), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 17 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 76 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 77 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 131 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 132 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 191 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 192 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 251 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 252 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 308 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 309 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 350 >gi|254900353|ref|ZP_05260277.1| peptide chain release factor 2 [Listeria monocytogenes J0161] Length = 327 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|254804065|ref|YP_003082286.1| peptide chain release factor 2 [Neisseria meningitidis alpha14] gi|254667607|emb|CBA03375.1| peptide chain release factor 2 [Neisseria meningitidis alpha14] gi|254673936|emb|CBA09720.1| peptide chain release factor RF-2 [Neisseria meningitidis alpha275] gi|309379815|emb|CBX21591.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|325143543|gb|EGC65864.1| peptide chain release factor 2 [Neisseria meningitidis M01-240013] gi|325207035|gb|ADZ02488.1| peptide chain release factor 2 [Neisseria meningitidis M04-240196] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|163783151|ref|ZP_02178145.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1] gi|159881485|gb|EDP74995.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 111/374 (29%), Positives = 188/374 (50%), Gaps = 34/374 (9%) Query: 3 FLSHK-QICDLKNRF-------------AEIELR---MSESPSVDAYIKLTEEYAA---I 42 L K +I +LK RF E+ MS D K + + Sbjct: 1 MLELKSKIEELKERFEGIRKVLDIDRLKEELRKMDETMSAQGFWDDQEKAKKVIQKRKWL 60 Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++ I ++ ++ ++L + ++D+ + + + + E+ Sbjct: 61 EETVNSIETLEKSLRDVEELSQTTPEEDTDT------WAILEEEMESLEDKLKELELKTY 114 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D K+ L I+AG GG+EA + L+RMY R+A + + VEV+ + +D G K Sbjct: 115 LSGEMDSKNAYLTIQAGAGGTEACDWADMLYRMYRRWAERKGYDVEVVDITPDDVAGIKS 174 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLED 221 + + G + ++ E GVHR+ R+ +++ R HTS A V+V+P+ E ++++ ED Sbjct: 175 VTLLVKGPYAYGYLRGEQGVHRLVRISPFDSNARRHTSFAAVSVMPQIDEDINIEVRDED 234 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 ++I+T RASG+GGQ+VN TD+AVR+THIPTGI+V E+SQ QNR +A+++L+A+LY + Sbjct: 235 LKIETFRASGAGGQYVNKTDTAVRLTHIPTGIVVSCQQERSQFQNRRKALELLKAKLYQL 294 Query: 281 ERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYID 337 E++++ +R K IG G +IR+Y F R + D R ++ V+ G ID Sbjct: 295 EQQKLMEKRKQYEGEKTDIGWG---HQIRSYVFHPYRLVKDLRTGYETGNVDAVMDGDID 351 Query: 338 DIINPLLTAHQAKM 351 I L K Sbjct: 352 QFIEGFLKWQAEKK 365 >gi|330836506|ref|YP_004411147.1| bacterial peptide chain release factor 2 (bRF-2) [Spirochaeta coccoides DSM 17374] gi|329748409|gb|AEC01765.1| bacterial peptide chain release factor 2 (bRF-2) [Spirochaeta coccoides DSM 17374] Length = 369 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 175/341 (51%), Gaps = 11/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ + E+E + + + K + ++ +S + + K+ D+ +I + + Sbjct: 28 IEKQIQELEAKTTLPDFWNDKEKAEKTFSDLSSLKDSFFPWRDLKKRIDDVGDLIDLYAN 87 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + + E+ + +I + + + L D C L I AG GG+EA+ + Sbjct: 88 EDD--ESLVQELDSQILDIEKEFHPLKVKTLLSQRFDKNDCFLSIHAGAGGTEASDWAAM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +K E+L D+GG K +SG+ F +K E+GVHR+ R+ Sbjct: 146 LMRMYLRWCERNGFKSEILDMQ-EDEGGIKSTTIRVSGQYAFGYLKGEAGVHRLVRISPF 204 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++ R HTS +V P EI++DI EDIR+DT RA G+GGQHVN TDSAVRITH Sbjct: 205 DSQKRRHTSFTSVYASPVIDDEIEIDIKPEDIRLDTYRAGGAGGQHVNKTDSAVRITHFE 264 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIR 307 +GI+V +E+SQ N+ A K+LR+RLY+ +++ E A K I G +IR Sbjct: 265 SGIVVQCQNERSQFMNKEVAFKMLRSRLYEYYKEKQEQEHQKTAIAKKGITWG---SQIR 321 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F + DHR N + ++ V+ G IDD I L Sbjct: 322 SYVFQPYTMVKDHRTNCQVGNIQAVMDGDIDDFIEQFLQWD 362 >gi|332971716|gb|EGK10664.1| peptide chain release factor RF2 [Desmospora sp. 8437] Length = 331 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + E + I+ + ++ +E Q + +I + + +S + + Sbjct: 1 MTDPAFWNDQGKAQKVIDENNHLKGIVQGVKELEEAHEELQVIAELIAEEDDESMLPEAE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + K LL D D S ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EGLKDLKRKLDE-----FELSLLLSDPYDKNSAILELHPGAGGTESQDWAQILLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE L ++ G K + I G + ++ E GVHR+ R+ ++SGR HT Sbjct: 116 AEHRGYKVETLDFLPGEEAGVKSVTLLIKGHNAYGYLRAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + D EDI+IDT R+SG+GGQHVNTTDSAVRITH+PT I+V Sbjct: 176 SFVSANVMPEIEDDDEIEIRSEDIKIDTYRSSGAGGQHVNTTDSAVRITHLPTNIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR RAMK+L+ARL + + + E + + Q IG G+ +IR+Y F Sbjct: 236 SERSQIKNRDRAMKILKARLVERQMEEKQKEIAELKGEQTEIGWGN---QIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + ++ V+ G ID I L Sbjct: 293 MVKDHRTQVEVGNVQSVVDGEIDTFIEAYLRQQ 325 >gi|170076819|ref|YP_001733457.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002] gi|169884488|gb|ACA98201.1| peptide chain release factor 2 [Synechococcus sp. PCC 7002] Length = 359 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 91/344 (26%), Positives = 163/344 (47%), Gaps = 7/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + ++E + ++ + + ++ + ++ Y Q + + +D + Sbjct: 14 DLKTLDAKIFDLEQQAAQPEFWEDQQGAQDILQELTELKGTVAQYQQWQGQFEDAAAIAE 73 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + L + + + N + D+ +L I AG GG++A Sbjct: 74 LLTEAEDPALLTEAMENLDDLQKEL--NRWELQQMLSGEYDNLGAVLTINAGAGGTDAQD 131 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R++ + +KV + S+ D+ G K ++GR F +K E G HR+ R Sbjct: 132 WAEMLLRMYTRWSEKQGYKVRLAEISEGDEAGLKSATLEVTGRYAFGYLKHEKGTHRLVR 191 Query: 188 VPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A V V+P + VDIP +D+ I T RA G GGQ+VN ++AVR Sbjct: 192 ISPFNANGKRQTSFAGVEVMPILGDNAVKVDIPEKDLEITTSRAGGKGGQNVNKVETAVR 251 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG+ V + E+SQ QN+ +A+ +L+A+L + +++ A E + R + Sbjct: 252 IVHLPTGVAVRCTQERSQLQNKEKALAILKAKLLIIAQEQRAQEIAEIRGDMVE-AAWGN 310 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y F + + D R N ++ V+ G +D I L Sbjct: 311 QIRNYVFHPYQMVKDLRTNHETTDVDGVMDGDLDAFIEASLRQD 354 >gi|238020780|ref|ZP_04601206.1| hypothetical protein GCWU000324_00670 [Kingella oralis ATCC 51147] gi|237867760|gb|EEP68766.1| hypothetical protein GCWU000324_00670 [Kingella oralis ATCC 51147] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 105/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + ++ +E + I+ + + + ++L ++ + Sbjct: 32 KKERLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIENGIADNRELIDMVVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N ++A + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 END-----ADGFAAIVADVAALEQQMADLEFKRMFNQPADPNNCFVDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L RMY RYA + +KVEV+ D + G I G + ++ E+GVHR+ R Sbjct: 147 AGMLLRMYTRYAERKGFKVEVIEQDDGEIAGINNATLRIEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE +++I D+R DT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEVDDSFEIEINPADLRTDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H+PTGI+V + S +SQH+NR M++LRA+L+++E ++ E+ A K +G G Sbjct: 267 HLPTGIVVQSQSSRSQHENRRIVMEMLRAKLFELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|320096082|ref|ZP_08027682.1| peptide chain release factor RF1 [Actinomyces sp. oral taxon 178 str. F0338] gi|319976962|gb|EFW08705.1| peptide chain release factor RF1 [Actinomyces sp. oral taxon 178 str. F0338] Length = 366 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 138/367 (37%), Positives = 203/367 (55%), Gaps = 22/367 (5%) Query: 5 SHKQICDLK---NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQE 58 H + L+ +A++E M+ ++ +L YA + + + + + Sbjct: 4 PHDDLASLEPLLAEYAQVEQDMASPATLADPARLRRVGRRYAELGRVKAAADRLAAARDD 63 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + + S EV A+E+E + +L P+D D + ILEI+A Sbjct: 64 LGAAREIAAEDPS-------FAQEVPALEEEAAAAHEALMRILAPRDPQDALNAILEIKA 116 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRG 171 G GG E+ALF DL RMY RYA W V +S++ + GG+K++ I G Sbjct: 117 GEGGEESALFASDLARMYARYAEAHGWSVTEMSATRTELGGFKDVTLAIRAKGSPAPDEG 176 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRAS 230 V++ +K+E GVHRVQRVP TE++GR+HTSA V +PE + + I D+RID R+S Sbjct: 177 VWAHLKYEGGVHRVQRVPVTESAGRIHTSAVGVFAMPEIEDDEDVVIDPNDLRIDVYRSS 236 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQ VNTTDSAVR+TH+P+GI+V+ +EKSQ QN+ A++VL +RL R + E Sbjct: 237 GPGGQSVNTTDSAVRVTHLPSGIVVSMQNEKSQLQNKEAALRVLASRLAAEARAKREAEA 296 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 SA R Q+ + DRSERIRTYNF + RI DHR + L+ VL G +D +I L A +A Sbjct: 297 SAQRLSQVRTVDRSERIRTYNFPENRIADHRTGFKAHNLDQVLGGALDPVIASLREADEA 356 Query: 350 KMIGSAS 356 + + A+ Sbjct: 357 ERLAQAA 363 >gi|16804547|ref|NP_466032.1| peptide chain release factor 2 [Listeria monocytogenes EGD-e] gi|16411997|emb|CAD00587.1| prfB [Listeria monocytogenes EGD-e] Length = 327 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDIKAYMATISA-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDGDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|49485626|ref|YP_042847.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MSSA476] gi|57650094|ref|YP_185692.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus COL] gi|150393263|ref|YP_001315938.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus JH1] gi|56749392|sp|Q6GB76|RF2_STAAS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|56749443|sp|Q7A6R4|RF2_STAAN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|56749454|sp|Q99VM1|RF2_STAAM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|71153100|sp|Q5HHR5|RF2_STAAC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|115311853|sp|Q2YSH5|RF2_STAAB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|189040005|sp|A6TZN3|RF2_STAA2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|49244069|emb|CAG42495.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MSSA476] gi|57284280|gb|AAW36374.1| peptide chain release factor 2, programmed frameshift [Staphylococcus aureus subsp. aureus COL] gi|149945715|gb|ABR51651.1| hypothetical protein SaurJH1_0795 [Staphylococcus aureus subsp. aureus JH1] gi|269940331|emb|CBI48708.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus TW20] Length = 369 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 110/348 (31%), Positives = 173/348 (49%), Gaps = 17/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M+E D K + A+ I++ + + Sbjct: 25 DLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWD 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + DL Q + K LL D + ILE+ G GG+E Sbjct: 85 LLQEEFDEEMKEDLEQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RY + +KVE + D+ G K + I G + +K E GVHR Sbjct: 140 SQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 200 LVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTES 259 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH P+GI+V +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG Sbjct: 260 AIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGW 319 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR N K++ V+ G I I L Sbjct: 320 G---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 364 >gi|254432093|ref|ZP_05045796.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001] gi|197626546|gb|EDY39105.1| peptide chain release factor 2 [Cyanobium sp. PCC 7001] Length = 358 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 159/342 (46%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R ++E S+ D ++ + + +++ ++ K D + Sbjct: 7 DVPALKARQQDLEQLASQPDFWDDQQAAQKQMRQLDDVKAQLEQLERWKAAVSDAEATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 H + + L + + L D + +L I AG GG++A Sbjct: 67 LHELEPDGDLLEEANAGLTSLRGDL--DRWELERLLSGPYDKEGAVLTINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A V V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHGMTVSVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E +DIP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKIEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I + Sbjct: 245 LHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G +D I LL A Sbjct: 304 IRNYVFHPYQLVKDLRTQHETTDVQGVMDGDLDPFIQSLLHA 345 >gi|225387178|ref|ZP_03756942.1| hypothetical protein CLOSTASPAR_00930 [Clostridium asparagiforme DSM 15981] gi|225046726|gb|EEG56972.1| hypothetical protein CLOSTASPAR_00930 [Clostridium asparagiforme DSM 15981] Length = 338 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 175/327 (53%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D K T + + + Y + +QE D+ +I +++ + Sbjct: 1 MEEPGFWDDPEKSTRMVREVKNLKDDVETYRELEQEYDDIQVMIQMGYEEND-ASVIPDI 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ I+ LE+ LLL + D + IL + AG GG+E+ + L+RMY R+A Sbjct: 60 QEMLDHFIKTLEDMRLKLLLSGEYDK-NNAILRLNAGAGGTESCDWCSMLYRMYCRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +K EVL D D+ G K + ++G + ++ E GVHR+ R+ A+G+ TS Sbjct: 119 KGFKYEVLDFLDGDEAGIKSVTIQVNGENAYGYLRSEHGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ DV++ +DIR+DT R+SG+GGQH+N T SA+RITH+PTGI+V +E+ Sbjct: 179 SCDVMPDIEADLDVEVNPDDIRVDTYRSSGAGGQHINKTSSAIRITHMPTGIVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ +AM++L+A+LY ++++ A + + R ++ +IR+Y + DH Sbjct: 239 SQFQNKDKAMQMLKAKLYMLKQQESAAKAAGIR-GEVKDIGWGNQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ VL G ID I+ L Sbjct: 298 RTGEESGNVDAVLDGSIDSFISAYLRW 324 >gi|297243831|ref|ZP_06927761.1| protein chain release factor B [Gardnerella vaginalis AMD] gi|296888252|gb|EFH26994.1| protein chain release factor B [Gardnerella vaginalis AMD] Length = 378 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK A++E + +E D + + +S S++ +Q +D T+I Sbjct: 25 DVDSLKATIADLEKQAAEPGLWDDSEHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + + +++ L D +S ++ IR+G GG +AA Sbjct: 85 LGEEEGDADSMNEAQEELGNIAHEL--DDMEVQTLLDGEYDARSAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K +++ +S ++ G K + + R+ E G HR+ R Sbjct: 143 FAQMLLRMYLRWAERNGYKTKMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR T + V V+P A +DIP DIR+DT +ASG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTGFSAVEVIPLVEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 TH+PTG++V+ E+SQ QNR AM VL++RL ++ E +A +K G Sbjct: 263 THLPTGLVVSMQDERSQIQNRAAAMAVLQSRLLVLK----HAEEAAKKKELAGDIKASWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID I + + + + E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDGFIEAGIRWRHEQRVAAQKE 373 >gi|49483011|ref|YP_040235.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MRSA252] gi|56749421|sp|Q6GIN7|RF2_STAAR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|49241140|emb|CAG39818.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MRSA252] Length = 369 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 109/348 (31%), Positives = 172/348 (49%), Gaps = 17/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M+E D K + A+ I++ + + Sbjct: 25 DLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWD 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + DL Q + K LL D + ILE+ G GG+E Sbjct: 85 LLQEEFDGEMKEDLEQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RY + +KV+ + D+ G K + I G + +K E GVHR Sbjct: 140 SQDWANMLFRMYQRYCEKKGFKVKTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 200 LVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTES 259 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH P+GI+V +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG Sbjct: 260 AIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGW 319 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR N K++ V+ G I I L Sbjct: 320 G---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 364 >gi|325135363|gb|EGC57984.1| peptide chain release factor 2 [Neisseria meningitidis M0579] gi|325208983|gb|ADZ04435.1| peptide chain release factor 2 [Neisseria meningitidis NZ-05/33] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIATGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|15677951|ref|NP_275123.1| peptide chain release factor 2 [Neisseria meningitidis MC58] gi|24638159|sp|Q9JXB3|RF2_NEIMB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|7227395|gb|AAF42446.1| peptide chain release factor 2 [Neisseria meningitidis MC58] gi|316984027|gb|EFV63006.1| peptide chain release factor 2 [Neisseria meningitidis H44/76] gi|325139451|gb|EGC61991.1| peptide chain release factor 2 [Neisseria meningitidis CU385] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +++E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFRIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|295092740|emb|CBK78847.1| bacterial peptide chain release factor 2 (bRF-2) [Clostridium cf. saccharolyticum K10] Length = 333 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 169/330 (51%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D KL E + + +Q+ ++ Q + + + N S I ++ Sbjct: 1 MEEPGFWDDPETSTKLMREAKNLKDTVENYRKLEQEYEDIQVMLEMGYEENDPSLIPEIQ 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + K I L D+ + IL++ AG GG+EA + L+RMY+R+ Sbjct: 61 GMMDDFVAKLEA-----IRIQTLLSGEYDNNNAILKLNAGAGGTEACDWCSMLYRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + + V+ D ++ G K I I+G + +K E GVHR+ R+ ++G+ T Sbjct: 116 SDKKGFTTSVIDYLDGEEAGIKSITLQINGENAYGFLKSERGVHRLVRISPFNSAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+P+ E DV+I +++RIDT R+SG+GGQH+N T SA+RITH+PTGI+V Sbjct: 176 SFVSCDVMPDIKEDLDVEINPDELRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ AM++L+ +LY ++++ A + S R + + +IR+Y + Sbjct: 236 NERSQFQNKEVAMQMLKTKLYMMKQEEHAEKLSDIR-GDVKDINFGNQIRSYVMQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR + VL G ID I+ L Sbjct: 295 KDHRTGAESGNVNAVLDGDIDLFISAYLKW 324 >gi|315226283|ref|ZP_07868071.1| peptide chain release factor RF2 [Parascardovia denticolens DSM 10105] gi|315120415|gb|EFT83547.1| peptide chain release factor RF2 [Parascardovia denticolens DSM 10105] Length = 396 Score = 221 bits (563), Expect = 1e-55, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 174/356 (48%), Gaps = 15/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--I 66 + L+ + AE+E + S D + +S ++ + Q D+ T+ + Sbjct: 45 LDSLRGKIAELEKQASAPGLWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSL 104 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 G D + + A E+ + K++ ++E + D+++ ++ IR+G GG +AA Sbjct: 105 GMEEEDEDSKQEAWSELKKLSKDLSDIEIQTL----LDGEYDNRAAVVTIRSGAGGVDAA 160 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A ++KV+V+ +S ++ G K + + ++ E G HR+ Sbjct: 161 DWAQMLMRMYIRWAERHQYKVQVIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLV 220 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + + R TS A V V+P +D+P D+R+DT + G GGQ VNTT SAVR Sbjct: 221 RISPFDNNSRRQTSFAAVEVIPLVEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVR 280 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDR 302 +TH+PTGI+V E+SQ QNR AM VL++RL ++++ E +A +K G Sbjct: 281 LTHLPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLKQE----EEAAKKKELAGDIKASW 336 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + V G ID I+ + + + E Sbjct: 337 GDQMRSYVLHPYQMVKDLRTGYETSDPQAVFDGDIDGFIDAGIRWRHQQRKEARQE 392 >gi|331701705|ref|YP_004398664.1| peptide chain release factor 2 [Lactobacillus buchneri NRRL B-30929] gi|329129048|gb|AEB73601.1| Peptide chain release factor 2 [Lactobacillus buchneri NRRL B-30929] Length = 373 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 177/349 (50%), Gaps = 10/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A E +M+E D + + + +K + K + DL + Sbjct: 27 DLDALSESIAINESKMAEPGFWDDQEAAQKLIDQTNQLKTKRDNFVGLKNKLDDLKVTLE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 DS + E EK+++ + LL D + ILEI G GG+EA Sbjct: 87 LIEEDSH--SGMEGEFETDEKQLKTKLDRYQLNLLLNGKYDHNNAILEIHPGAGGTEAQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + V+ L D G + ISG + ++ E G+HR+ R Sbjct: 145 WGSMLLRMYTRWAEAHGFTVQTLDYQVGDVAGLNSVSLLISGENAYGYLRSEKGIHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS A+V V+PE ++ +DI +D+RID R+SG+GGQH+N T SAVRI Sbjct: 205 LSPFDSAGRRHTSFASVDVMPELNDDVSIDINPDDLRIDVYRSSGAGGQHINKTSSAVRI 264 Query: 247 THIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 TH+PTGI+ + +++SQ QNR AM +L+++LY++E ++ A E++ + IG G Sbjct: 265 THLPTGIVAASQAQRSQLQNRQTAMNMLKSKLYELEEEKKAEEKAKIEGEQKDIGWG--- 321 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + DHR N + V+ G +D IN L ++ Sbjct: 322 SQIRSYVFHPYSMVKDHRTNYETANVNGVMDGDLDPFINAYLQWQLSQK 370 >gi|321310997|ref|YP_004193326.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford 1] gi|319802841|emb|CBY93487.1| peptide chain release factor 1 [Mycoplasma haemofelis str. Langford 1] Length = 364 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 148/349 (42%), Positives = 224/349 (64%), Gaps = 4/349 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + + ++ ++ R+ + I++ +E A + I Y ++ + + +I Sbjct: 11 KTLATIHEKYVQLNKRLEQETEGKEIIQINKEIAKLEKIAQGFIEYKKELENLDECLEII 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 S+ E LAQ E+ A ++ I ELEN + LL+P D D+K+ I+E+R+ GG E+ Sbjct: 71 K-KESNPEFVKLAQSELEAGKRRIPELENSLKRLLIPTDPMDEKNVIVEMRSAAGGDEST 129 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 +FV +LF Y+RYA + WK+ +L+ +N G + ++SG+ VFS+MKFESGVHRVQ Sbjct: 130 IFVENLFDTYKRYADMNNWKLTILNIQENSI-GMHFLAFSLSGKNVFSKMKFESGVHRVQ 188 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVPATE+ GRVHTS TV+V+PE +I+++I D+RID RASG+GGQHVN T+S+VRI Sbjct: 189 RVPATESKGRVHTSTITVSVMPEQDDIEINIDPSDLRIDVYRASGAGGQHVNKTESSVRI 248 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V EKSQ QNR AMK+LR++L++ E+++ + E + + QIG G R E+ Sbjct: 249 THLPTGIVVACQQEKSQIQNRAFAMKMLRSKLWEHEQEKQSKEIAETVRKQIGRGFRCEK 308 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKMIG 353 IRTYN+ Q RITDHR++LTL KL ++ G + +I LL + + Sbjct: 309 IRTYNYPQNRITDHRVSLTLNKLNEIMIGGDLTEIHESLLNQQAEESLS 357 >gi|121635783|ref|YP_976028.1| peptide chain release factor 2 [Neisseria meningitidis FAM18] gi|261378556|ref|ZP_05983129.1| peptide chain release factor 2 [Neisseria cinerea ATCC 14685] gi|304388773|ref|ZP_07370830.1| peptide chain release factor RF2 [Neisseria meningitidis ATCC 13091] gi|166225113|sp|A1KWK6|RF2_NEIMF RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|120867489|emb|CAM11266.1| peptide chain release factor 2 [Neisseria meningitidis FAM18] gi|254671300|emb|CBA08663.1| peptide chain release factor RF-2 [Neisseria meningitidis alpha153] gi|261393453|emb|CAX51098.1| peptide chain release factor II (RF-2) [Neisseria meningitidis 8013] gi|269145108|gb|EEZ71526.1| peptide chain release factor 2 [Neisseria cinerea ATCC 14685] gi|304337265|gb|EFM03442.1| peptide chain release factor RF2 [Neisseria meningitidis ATCC 13091] gi|308390220|gb|ADO32540.1| peptide chain release factor 2 [Neisseria meningitidis alpha710] gi|325131224|gb|EGC53936.1| peptide chain release factor 2 [Neisseria meningitidis M6190] Length = 367 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|241895046|ref|ZP_04782342.1| peptide chain release factor 2 [Weissella paramesenteroides ATCC 33313] gi|241871764|gb|EER75515.1| peptide chain release factor 2 [Weissella paramesenteroides ATCC 33313] Length = 396 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 176/347 (50%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + A E +M E + + + + + Y + +++ I Sbjct: 50 DLDALNDEIAANEAKMVEPDFWQDNVAAQKIIDENNVLKGRRDDYLKLANGVENVEAAI- 108 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D S+ D+A ++K +L LL + D + ILEI G+GG+E+A Sbjct: 109 DLLSELYDEDMATEMADDLDKLSEDLSAYRLAQLLNEPYDK-NNAILEIHPGSGGTESAD 167 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L RMY R+A +KV+++ D G + I+G + ++ E GVHR R Sbjct: 168 WGANLQRMYTRWAEQHGFKVDIMDYHPGDVAGVDSVTLMITGHNAYGYLRSERGVHRFVR 227 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++GR HTS ++ V+PE ++VDI D+++D RASG+GGQH+N T SAVR+ Sbjct: 228 ISPFDSAGRRHTSFVSIDVMPELDDSVEVDINPADVKMDVYRASGAGGQHINKTSSAVRL 287 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V + ++SQ QN+ A +LRA+LY +E + ER+A + +G + Sbjct: 288 THIPTGIVVASQQQRSQFQNKDTAYAMLRAKLYQLEMDKKEKERAAIAGDHLENG-WGSQ 346 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IR+Y F R + DHR + V+ G +D IN L ++ Sbjct: 347 IRSYVFQPYRMVKDHRDGFESGNPQAVMDGDLDPFINAYLRWRLSEQ 393 >gi|225027512|ref|ZP_03716704.1| hypothetical protein EUBHAL_01768 [Eubacterium hallii DSM 3353] gi|224955151|gb|EEG36360.1| hypothetical protein EUBHAL_01768 [Eubacterium hallii DSM 3353] Length = 371 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 176/341 (51%), Gaps = 6/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + E+E M E + K E + + +S Y + D+ T+I Sbjct: 27 LSHKHEQIKELESEMREEGFWNDPDKAQEVTRKVKNLKDTVSAYHALELTLDDVSTMIEL 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N +++ ++ + E + + L D + I+ + AG GG+E+ + Sbjct: 87 GNEEND--ASVIPDIEELLGEFEIEFDNLKIQTLLSGEYDKNNAIVTLHAGAGGTESCDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L+RMY ++A +K EVL D D+ G K I ++G + +K E GVHR+ R+ Sbjct: 145 AGMLYRMYSKWADSHGFKTEVLDYLDGDEAGIKSITFEVNGENAYGYLKSERGVHRLVRI 204 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A+ V+P+ E V+I EDIRIDT RASG+GGQH+N TDSA+RIT Sbjct: 205 SPFNAAGKRQTSFASCDVMPDIEEDLSVEIADEDIRIDTYRASGAGGQHINKTDSAIRIT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V +E+SQH+N+ +AM++L+A+LY ++ + + S R ++ +I Sbjct: 265 HIPTGVVVQCQNERSQHKNKDKAMQMLKAKLYLIKEQENREKLSDIR-GEVSDNGWGNQI 323 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + DHR ++ V+ G +D +N L Sbjct: 324 RSYVMQPYTMVKDHRTGEETGNVQSVMDGNLDAFMNAYLRW 364 >gi|139474158|ref|YP_001128874.1| peptide chain release factor 2 [Streptococcus pyogenes str. Manfredo] gi|166225116|sp|A2RFN2|RF2_STRPG RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|134272405|emb|CAM30661.1| peptide chain release factor 2 [Streptococcus pyogenes str. Manfredo] Length = 365 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 187/348 (53%), Gaps = 12/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E M+E + I + ++ + K + ++ + ++ Sbjct: 25 DLDRLEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D +++ + ++ + ++ LL + D + ILEI G+GG+EA Sbjct: 85 MLDEDDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R Sbjct: 141 WGDLLLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+ Sbjct: 201 ISPFDSAKRRHTSFASVEVMPELDNTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRL 260 Query: 247 THIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G Sbjct: 261 THIPTGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 318 SQIRSYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 365 >gi|41409273|ref|NP_962109.1| peptide chain release factor 2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|41398093|gb|AAS05723.1| PrfB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 373 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 163/346 (47%), Gaps = 5/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E S+ D + + +S ++ ++ + DL + Sbjct: 27 DVDGLRARIEKLEHEASDPQLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E A E A K +R L D++ ++ IR+G GG +AA Sbjct: 87 LAAEDGEGAAEALAEADAELKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAAD 146 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ R Sbjct: 147 WAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVR 206 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 207 ISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRL 266 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS + Sbjct: 267 THIPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRSEERAELDAL-KGEGGS-SWGNQ 324 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + K Sbjct: 325 MRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 370 >gi|296140715|ref|YP_003647958.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM 20162] gi|296028849|gb|ADG79619.1| peptide chain release factor 2 [Tsukamurella paurometabola DSM 20162] Length = 371 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 102/344 (29%), Positives = 165/344 (47%), Gaps = 6/344 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E + S+ + + + +S S++ +Q DL + Sbjct: 24 DLDELRRRVDELEHKASDPELWNDQANAQQVTSQLSHAQSELRRVTDLRQRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENE-INYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ A +E ++ E E + + D + ++ IRAG GG +AA Sbjct: 84 LAEAEEGDDLAAALEDADADRAKLRGEIEAMEVKTMLSGEYDARDALVNIRAGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VEV +S ++ G K I + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWAEKHGYGVEVYDTSYAEEAGLKSATFAIKTDYAYGTLSVEMGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V VLP +D+ ++R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQGRRQTSFAEVEVLPVVETTDHIDVDENEVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AMKVL+A+L + +R+ + A + + S Sbjct: 264 LTHIPTGIVVTCQNEKSQLQNKVAAMKVLQAKLLERKRQEERAQMDALKTTEGAS--WGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 ++R+Y + + D R N + VL G +D I + Sbjct: 322 QMRSYVLHPYQMVKDLRTNYEVNNPSAVLDGDLDGFIEAGIRWR 365 >gi|254508224|ref|ZP_05120348.1| peptide chain release factor 2 [Vibrio parahaemolyticus 16] gi|219548841|gb|EED25842.1| peptide chain release factor 2 [Vibrio parahaemolyticus 16] Length = 320 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 167/323 (51%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +A+ ++ I +Q ++ L + + ++ Sbjct: 3 NEPERAQALGKERSALEAVVETIDQLEQGVEDVDGLLELAVEEEDQETFDEIEPE----- 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ ++ + + D C +++++G+GG+EA + + RMY R+A + +K Sbjct: 58 LAELEAKLEKLEFRRMFSGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ + G K ISG + ++ E+GVHR+ R ++SGR HTS A+ + Sbjct: 118 TEVIEVSEGEVAGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFI 177 Query: 207 LPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+ Sbjct: 178 YPEIDDNIDIDINPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R Sbjct: 238 NKDQAMKQLRAKLFELEIQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 295 VENRNTQAVLDGDLDKFIEASLK 317 >gi|282882039|ref|ZP_06290680.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B] gi|300814941|ref|ZP_07095169.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836 str. F0141] gi|281298069|gb|EFA90524.1| peptide chain release factor 2 [Peptoniphilus lacrimalis 315-B] gi|300510911|gb|EFK38183.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 370 Score = 221 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 118/348 (33%), Positives = 185/348 (53%), Gaps = 10/348 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+++ E+ + E D K + ++ K++ YD+ +D + ++ Sbjct: 27 DVNGLRDKIKELNKKQMEQNFWDDNEKAQKIIKELNSYQRKVNPYDEISDLIEDANDILL 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + L + E + E ++ LL + ++ IL I AG GG+EA Sbjct: 87 LMEMEDDYSSYDEFKKLILNIEKKVSEYKLETLLNGEFDEN--DAILSIHAGAGGTEAQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RYA + +KVE L D+ G K + ISG + +K E GVHR+ R Sbjct: 145 WASMLLRMYVRYATNKGFKVETLDILKEDEAGIKSVTLKISGEHAYGFLKGEKGVHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS ++V V P +ID++I ED++IDT R+SG+GGQHVNTTDSAVRI Sbjct: 205 ISPFDANKRRHTSFSSVDVFPDIDGDIDIEIKDEDLKIDTYRSSGAGGQHVNTTDSAVRI 264 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRS 303 THIPTGI+V +E+SQ QNR RAM+ L+A+L + + + + QI G Sbjct: 265 THIPTGIVVQCQNERSQIQNRERAMQTLKAKLLALAEEERKEKIDDLQGNYSQIAWG--- 321 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F + DHR N + + V+ G +D IN L ++ K Sbjct: 322 SQIRSYVFQPYTLVKDHRTNCEVGDVNKVMDGDLDPFINAYLQSNATK 369 >gi|158425248|ref|YP_001526540.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571] gi|158332137|dbj|BAF89622.1| peptide chain release factor 2 [Azorhizobium caulinodans ORS 571] Length = 376 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 166/347 (47%), Gaps = 10/347 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + + R AE+ + D + + + + ++ D+ ++ D + Sbjct: 22 HLNVDRSRRRLAELNAIAEDPTLWDDPERAQKIMQERTSLEDALNAIDRITRDLTDNIEL 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++E + E ++ L D LE+ AG GG+++ Sbjct: 82 IEL--GEAEGDESVITEAAGALDALKAELARRELDALLSGEADSNDTYLEVHAGAGGTDS 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ +KVE++ S + G K + G + +K E+GVHR+ Sbjct: 140 QDWAEMLLRMYRRWCERHGFKVELVDESAGEQAGLKSATIIVKGHNAYGWLKTEAGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R TS A++ V P + V+I D+R+DTMR+ G+GGQHVN T+SAV Sbjct: 200 VRISPFDSNARRQTSFASIDVYPVIDDRIVVEINESDVRVDTMRSGGAGGQHVNKTESAV 259 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGD 301 R+THIPTGI +V+ ++SQH+NR A +LRA+L+++E K+ A + IG G Sbjct: 260 RLTHIPTGIAVVSQGDRSQHKNRATAWNMLRAKLFEMELKKREEAAAAEQAARTDIGWG- 318 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R +T + VL G +D + L Sbjct: 319 --HQIRSYVLQPYQLVKDLRTGVTSGTPQEVLDGDLDPFMEAALAQR 363 >gi|323706500|ref|ZP_08118060.1| peptide chain release factor 2 [Thermoanaerobacterium xylanolyticum LX-11] gi|323534162|gb|EGB23953.1| peptide chain release factor 2 [Thermoanaerobacterium xylanolyticum LX-11] Length = 327 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 114/330 (34%), Positives = 174/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MSE + + +L+++ + IIS+ +++ ++ L + + +S +++ Sbjct: 1 MSEPDFWNDLEKFQELSKKQKDLKEIISEYEALEKQWEDLHTLIELGLEEGDESLSQEVH 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K L D + IL I AG GG+EA + L RMY R+ Sbjct: 61 EEYKALSKKINDM-----KIKTLLSGPYDKNNAILSIHAGAGGTEAQDWTEMLLRMYMRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ + + VE + DD G K + + G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ASSKNYDVETVDYLPGDDAGVKSVTIMVKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE + VDI ED++IDT R+SG+GGQHVN T+SA+RITHIPTGI+V Sbjct: 176 SFALVEVLPEIDDDIKVDIRPEDLKIDTYRSSGAGGQHVNKTESAIRITHIPTGIIVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 TERSQMQNRETAMKMLKAKLMDMMIKEQKEKIEDL-KGEHKEAGWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + + V+ G IDD IN L Sbjct: 295 KDHRTNFEVGNVNAVMDGEIDDFINAYLKQ 324 >gi|323697942|ref|ZP_08109854.1| peptide chain release factor 2 [Desulfovibrio sp. ND132] gi|323457874|gb|EGB13739.1| peptide chain release factor 2 [Desulfovibrio desulfuricans ND132] Length = 372 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 113/340 (33%), Positives = 170/340 (50%), Gaps = 16/340 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R IE +S+ + D LT +E + +S + + K + + + Sbjct: 31 KTRLDAIEKEISKPGAWDNPEALTPLLKEKSQLSTKLEMYDGLSEAKDDLDAWLELAQED 90 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + L L E+ + D ILEI G GG E+ + Sbjct: 91 PDEESLSALNAQVALLRERL-----AGTELATMFAFEHDKGDAILEIHPGAGGVESQDWA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY RYA + +KV L ++ G K + I G + +K E+GVHR+ R+ Sbjct: 146 EMLLRMYYRYAERKGFKVTQLDYQAGEEAGLKSVTLQIEGLFAYGLLKGETGVHRLIRIS 205 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++SGR HTS A+V V P+ E ++++ ED+RIDT R+SG GGQ VN T SAVRITH Sbjct: 206 PFDSSGRRHTSFASVDVYPDMDENIEIEVKDEDLRIDTFRSSGPGGQSVNKTSSAVRITH 265 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSER 305 IPTGI+ +EKSQH+N+ A+++++ARLY+ E K++ R + K I G + Sbjct: 266 IPTGIVAQCQNEKSQHRNKATALRLVKARLYERELKKIEESRRQDYQAKDAIAWG---SQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IRTY R + DHR N ++ L G +D++I L Sbjct: 323 IRTYTLQPYRLVKDHRSNCESGNVDAFLDGDLDEMIRNYL 362 >gi|302878965|ref|YP_003847529.1| hypothetical protein Galf_1754 [Gallionella capsiferriformans ES-2] gi|302581754|gb|ADL55765.1| hypothetical protein Galf_1754 [Gallionella capsiferriformans ES-2] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 173/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R E+ + +L E + ++ + Q + +L + Sbjct: 30 DTKQERLTEVCELAEDPAIWQDAKRAQELGRERKMLESVVFGLGKIQQDLTDAAELFEMS 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + A + + + D SC ++I+AG+GG+EA Sbjct: 90 QEENDEASLMSTAADIDDIERRVAEM-----EFRRMFNHPMDPNSCFIDIQAGSGGTEAQ 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY RYA + ++VEVL SD D G K + G F ++ E+GVHR+ Sbjct: 145 DWASMLMRMYVRYAERKGYQVEVLEISDGDVAGIKGASIKLIGEYAFGHLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS ++V V PE + +++I D+R+DT RASG+GGQH+N TDSAVR Sbjct: 205 RKSPFDSGNRRHTSFSSVFVYPEVDDSIEIEINPADLRVDTYRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPT I+V S++SQH+NR AM +L++R+Y+ E ++ E+ K IG G Sbjct: 265 ITHIPTNIVVQCQSDRSQHRNRAEAMAMLKSRMYEEELRKRNEEKQEMEDGKTDIGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R N + + VL G +DD I+ L Sbjct: 323 -HQIRSYVLDQSRIKDLRTNHEVGNTQGVLDGDLDDFISASLKQ 365 >gi|294668116|ref|ZP_06733223.1| peptide chain release factor 2 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309824|gb|EFE51067.1| peptide chain release factor 2 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|261365043|ref|ZP_05977926.1| peptide chain release factor 2 [Neisseria mucosa ATCC 25996] gi|296313763|ref|ZP_06863704.1| peptide chain release factor 2 [Neisseria polysaccharea ATCC 43768] gi|288566638|gb|EFC88198.1| peptide chain release factor 2 [Neisseria mucosa ATCC 25996] gi|296839690|gb|EFH23628.1| peptide chain release factor 2 [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|320528516|ref|ZP_08029673.1| peptide chain release factor 2 [Solobacterium moorei F0204] gi|320131102|gb|EFW23675.1| peptide chain release factor 2 [Solobacterium moorei F0204] Length = 350 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 177/346 (51%), Gaps = 6/346 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + R AE M+E+ + K + + + I + +L Sbjct: 1 MATLFDLEGKEKRLAENNALMAEADFWNDQKKAQKIIRESNQLKVLIETHHSLTDSFAEL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 IG+ +S + I E + E EI LL + + ILEI G GG Sbjct: 61 SEGIGELSSSFDEDMNELISEEYTETMKKFEEFEIQVLLSGPYDNH--NSILEIHPGAGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L+RMY R+A + +K+E++ + ++ G K I G + +K E+GV Sbjct: 119 TEAMDWAAMLYRMYMRWAERKGFKIELMDYQEGEEAGMKSCSVLIQGPMAYGYLKAENGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++ R HTS A+V ++PE + +++I +D+ I TMRASG+GGQH+N TD Sbjct: 179 HRLVRISPFDSNARRHTSFASVEIMPEFEDDLEIEIDDKDLDIITMRASGAGGQHINKTD 238 Query: 242 SAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+G + S++SQ QNR + +L+++L ++ + ER+A + ++ + Sbjct: 239 SAVRMTHIPSGITVFCQSQRSQIQNREACLNMLKSKLLQLKIRE-NEERAAAVRGEVKAN 297 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F+ + D R ++ V+ G ID I+ L Sbjct: 298 EWGSQIRSYVFAPYTMVKDLRTGHEAGNVQAVMDGEIDGFIDSYLR 343 >gi|288905693|ref|YP_003430915.1| peptide chain release factor 2 [Streptococcus gallolyticus UCN34] gi|306831789|ref|ZP_07464945.1| peptide chain release factor RF2 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325978722|ref|YP_004288438.1| peptide chain release factor 1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288732419|emb|CBI13991.1| peptide chain release factor 2 [Streptococcus gallolyticus UCN34] gi|304425987|gb|EFM29103.1| peptide chain release factor RF2 [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325178650|emb|CBZ48694.1| Peptide chain release factor 1 [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 336 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 186/341 (54%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + I + ++ + +++ ++ + + + Sbjct: 1 MEEDIALLENKMTEPDFWNDNIAAQKTSQELNGLKQTYETFNEMQELSDETELYLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D D Q E+ +++ ++ LL + D + ILEI G+GG+EA + Sbjct: 61 D----DSVQAELEESLEKLDKIMTSYEMTLLLSEPYDRNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY RY + +KVE L D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LFRMYTRYGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFSSVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F+ + DHR + +++ V+ G ID I+ L Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIDGFIDAYLKWR 334 >gi|328952688|ref|YP_004370022.1| hypothetical protein Desac_0974 [Desulfobacca acetoxidans DSM 11109] gi|328453012|gb|AEB08841.1| hypothetical protein Desac_0974 [Desulfobacca acetoxidans DSM 11109] Length = 369 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 117/342 (34%), Positives = 187/342 (54%), Gaps = 10/342 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + K R AEIE+ ++ + ++ + ++++ ++ ++ +DL ++ Sbjct: 27 DLEKKKARLAEIEVLAAKPDFWQNSSQSSQILKERGALTHLLTVWQEQGKKIEDLEVLLE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ + A ++VL K ++ +L DDDK I+ I AG GG+EA Sbjct: 87 LAQEETD--EQAFVDVLTDLKVQERALQQLELEMLLGGEDDDKDAIITIHAGAGGTEAQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + ++ E+ D+ G K +SG + +K ESG+HR+ R Sbjct: 145 WAEMLLRMYLRFAERQGFRTEIYDLLPGDEAGVKSSTFAVSGPHAYGYLKSESGIHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +ASGR HTS A V V PE +I +D+ +D+RIDT RASG+GGQHVN T SAVR+ Sbjct: 205 ISPFDASGRRHTSFAAVFVYPEADEDIQIDLQEKDLRIDTFRASGAGGQHVNKTSSAVRL 264 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRS 303 THIPTGI+V+ +E+SQH+NR AM+VL++RLY++E+ + + + + I G Sbjct: 265 THIPTGIVVSMQNERSQHRNRELAMRVLKSRLYELEKSKRQEKAQVVLDAQKDIAWG--- 321 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y R I DHR +E VL G +D I L Sbjct: 322 SQIRSYVLQPYRLIKDHRTKHEEGNVEAVLDGDLDAFIEAYL 363 >gi|59802262|ref|YP_208974.1| peptide chain release factor 2 [Neisseria gonorrhoeae FA 1090] gi|194099790|ref|YP_002002925.1| peptide chain release factor 2 [Neisseria gonorrhoeae NCCP11945] gi|239999963|ref|ZP_04719887.1| peptide chain release factor 2 [Neisseria gonorrhoeae 35/02] gi|240013088|ref|ZP_04720001.1| peptide chain release factor 2 [Neisseria gonorrhoeae DGI18] gi|240017657|ref|ZP_04724197.1| peptide chain release factor 2 [Neisseria gonorrhoeae FA6140] gi|240081863|ref|ZP_04726406.1| peptide chain release factor 2 [Neisseria gonorrhoeae FA19] gi|240114140|ref|ZP_04728630.1| peptide chain release factor 2 [Neisseria gonorrhoeae MS11] gi|240116780|ref|ZP_04730842.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID18] gi|240119007|ref|ZP_04733069.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID1] gi|240122278|ref|ZP_04735240.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID24-1] gi|240122455|ref|ZP_04735411.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID332] gi|240126695|ref|ZP_04739581.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-92-679] gi|240127168|ref|ZP_04739829.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-93-1035] gi|254493466|ref|ZP_05106637.1| peptide chain release factor 2 [Neisseria gonorrhoeae 1291] gi|260441572|ref|ZP_05795388.1| peptide chain release factor 2 [Neisseria gonorrhoeae DGI2] gi|268595771|ref|ZP_06129938.1| peptide chain release factor 2 [Neisseria gonorrhoeae 35/02] gi|268597961|ref|ZP_06132128.1| peptide chain release factor 2 [Neisseria gonorrhoeae FA19] gi|268600216|ref|ZP_06134383.1| peptide chain release factor 2 [Neisseria gonorrhoeae MS11] gi|268602456|ref|ZP_06136623.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID18] gi|268604723|ref|ZP_06138890.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID1] gi|268681042|ref|ZP_06147904.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID332] gi|268685277|ref|ZP_06152139.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-92-679] gi|268685523|ref|ZP_06152385.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-93-1035] gi|291044943|ref|ZP_06570652.1| peptide chain release factor 2 [Neisseria gonorrhoeae DGI2] gi|293398016|ref|ZP_06642222.1| peptide chain release factor 2 [Neisseria gonorrhoeae F62] gi|75432344|sp|Q5F5H5|RF2_NEIG1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|238693228|sp|B4RQU4|RF2_NEIG2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|59719157|gb|AAW90562.1| putative peptide chain release factor 2 [Neisseria gonorrhoeae FA 1090] gi|193935080|gb|ACF30904.1| PrfB [Neisseria gonorrhoeae NCCP11945] gi|226512506|gb|EEH61851.1| peptide chain release factor 2 [Neisseria gonorrhoeae 1291] gi|268549160|gb|EEZ44578.1| peptide chain release factor 2 [Neisseria gonorrhoeae 35/02] gi|268551749|gb|EEZ46768.1| peptide chain release factor 2 [Neisseria gonorrhoeae FA19] gi|268584347|gb|EEZ49023.1| peptide chain release factor 2 [Neisseria gonorrhoeae MS11] gi|268586587|gb|EEZ51263.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID18] gi|268588854|gb|EEZ53530.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID1] gi|268621326|gb|EEZ53726.1| peptide chain release factor 2 [Neisseria gonorrhoeae PID332] gi|268625561|gb|EEZ57961.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-92-679] gi|268625807|gb|EEZ58207.1| peptide chain release factor 2 [Neisseria gonorrhoeae SK-93-1035] gi|291011837|gb|EFE03833.1| peptide chain release factor 2 [Neisseria gonorrhoeae DGI2] gi|291611962|gb|EFF41031.1| peptide chain release factor 2 [Neisseria gonorrhoeae F62] gi|317165260|gb|ADV08801.1| peptide chain release factor 2 [Neisseria gonorrhoeae TCDC-NG08107] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKESKILEGIVLTLDNIASGIEDNRMLIEMAVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVKEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|262201848|ref|YP_003273056.1| peptide chain release factor 1 [Gordonia bronchialis DSM 43247] gi|262085195|gb|ACY21163.1| peptide chain release factor 1 [Gordonia bronchialis DSM 43247] Length = 364 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 144/357 (40%), Positives = 206/357 (57%), Gaps = 17/357 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E ++S+ D ++ + +A ++P+++ + + + + Sbjct: 15 IDDILAEHAGLEQQLSDPALHDDPAAARRVGKRFAELAPVMATHARLVAARDDLAAAREL 74 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + +E + A+E + EL+ + LL P+D D +LEI++G GG E+ Sbjct: 75 AADDPAFAEE-------IPALESTVAELDATLTDLLAPRDPHDGDDVVLEIKSGAGGEES 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-----GRGVFSRMKFES 180 ALF DL RMY +Y WK +VL +++D GGYKE +I GV+SR+KFE Sbjct: 128 ALFAADLARMYLKYCERHGWKAQVLGVTESDLGGYKEATLSIKAKEAVREGVWSRLKFEG 187 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V + PE E V I D+RID R+SG GGQ VNT Sbjct: 188 GVHRVQRVPVTESQGRIHTSAAGVLIYPEPEELEQVAIDESDLRIDVYRSSGKGGQGVNT 247 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + + R QI Sbjct: 248 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQAAAEEEAQAAAAQGRAAQIR 307 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 + DRSERIRTYNF + RI DHRI L+ VL G +D +++ L+ A + + + Sbjct: 308 TVDRSERIRTYNFPENRIADHRIGYKANNLDAVLGGEMDGLLDALVAADRQARLEAQ 364 >gi|313884513|ref|ZP_07818274.1| peptide chain release factor 2 [Eremococcus coleocola ACS-139-V-Col8] gi|312620297|gb|EFR31725.1| peptide chain release factor 2 [Eremococcus coleocola ACS-139-V-Col8] Length = 341 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 176/343 (51%), Gaps = 6/343 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A+ E +M D K + + ++ + + DL + + Sbjct: 1 MEEDIADYEHQMLAPDFWDDNDKAQKVISQLNEAKASYQTIQDLVSQVDDL-GMALELYE 59 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +S+ D+ + + L N LLL D + ILEI G GG+E+ + Sbjct: 60 ESQDLDMLSEAEDIMTVTSKALNNYELQLLLSGPHDS-ANAILEIHPGAGGTESQDWGSM 118 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+R+A + ++VEVL D+ G K + I G + +K E GVHR+ R+ Sbjct: 119 LLRMYQRWADKQGFQVEVLDYQAGDEAGIKSVTLEIKGHNAYGYLKSEKGVHRLVRISPF 178 Query: 192 EASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS A++ V PE + +++I +DIR+DT RASG+GGQH+N T SAVRITHIP Sbjct: 179 DSNARRHTSFASIEVTPEMDDSIEIEINPDDIRVDTYRASGAGGQHINKTSSAVRITHIP 238 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+ + +++SQ QNR +AM +L+A+LY E + A E +A + Q+ G +IR+Y Sbjct: 239 TGIVTQSQAQRSQFQNRDQAMAMLKAKLYQREEEERAKEMAAIKGQQLEIG-WGSQIRSY 297 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 F + DHR + + V+ G +D ++ L Sbjct: 298 VFHPYSMVKDHRTGYEVGNSQAVIDGDLDGFMDAYLKWQVQNQ 340 >gi|271962992|ref|YP_003337188.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021] gi|270506167|gb|ACZ84445.1| peptide chain release factor 2 [Streptosporangium roseum DSM 43021] Length = 372 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 95/348 (27%), Positives = 167/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ + E+ + + + + + +S + +++ + Q +DL + Sbjct: 25 DLDAIRKQLEELGEQAAAPDLWNDQEHAQKVTSKLSYLQGEVNRVESLGQRLEDLTVLYE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E R+ A E+ +++ +I LE L D + ++ I + GG +A Sbjct: 85 LAAAEDDEETREEADRELASLKSDIGALEV----RTLLSGEYDAREAVVTINSQAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A + + EV +S ++ G K T+ + ++ E G HR+ Sbjct: 141 ADWAQMLLRMYIRWAERKGYPTEVYETSYAEEAGIKSATFTVKAPYAYGTLRGEHGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P +DI +D+R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVDVVPVVETTDHIDINEDDLRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+++L + +R+ A + R + Sbjct: 261 RLTHLPTGIVVSCQNERSQLQNKATAMAVLQSKLLERKRQEEAAALNEIRGE--ATTSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR Y + + D R VL G +D+ I + + + Sbjct: 319 TQIRNYVLHPYQIVKDLRTGTEAGNPSSVLDGDLDEFIESEIRWTRRQ 366 >gi|187734757|ref|YP_001876869.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC BAA-835] gi|187424809|gb|ACD04088.1| peptide chain release factor 2 [Akkermansia muciniphila ATCC BAA-835] Length = 329 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 98/337 (29%), Positives = 166/337 (49%), Gaps = 16/337 (4%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS D L E + + S + ++ + + + D R+ Sbjct: 1 MSAPDFWDDQNAARALMAEVNPLKHRMEAFSALKSRLEDIDAAIELAQEADDDDLGREAV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L L D SC + I AG GG+EA + L RMY R+ Sbjct: 61 EEFARWQKSLAD-----FELLTLLNGPQDQASCYVTIHAGAGGTEACDWASMLLRMYIRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 R + V L S+D DD G + + + G + +K E G+HR+ R+ +++G+ HT Sbjct: 116 CERRGFSVTYLESTDGDDAGIRSVTLKVDGEYAYGYLKNERGIHRLVRISPFDSAGKRHT 175 Query: 200 SAATV-AVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ A + I+++I +D+++DT R+ G GGQ+VN ++AVRITHIP+G++V Sbjct: 176 SFASLDATPEVSDSINIEILDKDLKVDTYRSGGKGGQNVNKVETAVRITHIPSGVIVACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQ +N+ AM +LRA+LY +E + E R + K IG G+ +IR+Y F + Sbjct: 236 NERSQLRNKEEAMNMLRAKLYQIEEDKKQAEADRQYSEKGDIGWGN---QIRSYVFQPYQ 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + D R + ++ V+ G +D I +L H+ + Sbjct: 293 MVKDLRTGVESGNIQDVMDGNLDPFIEAMLRGHKRER 329 >gi|167039139|ref|YP_001662124.1| peptide chain release factor 2 [Thermoanaerobacter sp. X514] gi|166853379|gb|ABY91788.1| peptide chain release factor 2 [Thermoanaerobacter sp. X514] Length = 330 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 113/330 (34%), Positives = 173/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ K L ++ A+ ++ + + K ++ L + + +S ++ Sbjct: 1 MSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLSTLIELGLEEGDESITDEVD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K + L D + IL I AG+GG+EA + L RMY R+ Sbjct: 61 KEYKELKKKLED-----LKIKTLLNGLYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++VE L ++ G K + I G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ANDKGFEVETLDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SAVRITH+PTGI+V Sbjct: 176 SFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 SERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + ++ V+ G ID IN L Sbjct: 295 KDHRTNYEVGNVQAVMDGEIDGFINAYLKQ 324 >gi|54297691|ref|YP_124060.1| hypothetical protein lpp1742 [Legionella pneumophila str. Paris] gi|53751476|emb|CAH12894.1| hypothetical protein lpp1742 [Legionella pneumophila str. Paris] Length = 335 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 169/337 (50%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + S D L E + I+ +S Q ++++L + + + + Sbjct: 2 EEVIRELESSNVWDNPEQAQALGRERTQLETIVHSLSQLSQSISDQRELFELAREEDDEQ 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 I D+ K I + + + + D + L+I+AG+GG+EA + L Sbjct: 62 TIIDIGDE-----LKSIEQQVASLEFRRMFSGKMDHSNAYLDIQAGSGGTEAQDWAEMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+ + E++ S + G K +G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWGEHHGFTTELIECSPGEVAGIKSATIHFTGEYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V V PE + D+RIDT RASG+GGQHVN TDSAVRITHIP+G Sbjct: 177 GNRRHTSFAAVFVSPEIDDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHIPSG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +AMK LRA+LY++E ++ E+ A K IG G +IR+Y Sbjct: 237 IVVQCQNDRSQHKNKDQAMKQLRAKLYELEMQKKNAEQQALEATKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D I L A Sbjct: 294 VLDQSRIKDLRTGVETSNTQAVLDGSLDQFIEASLKA 330 >gi|81428109|ref|YP_395108.1| peptide chain release factor 2 [Lactobacillus sakei subsp. sakei 23K] gi|78609750|emb|CAI54796.1| Peptide chain release factor 2 [Lactobacillus sakei subsp. sakei 23K] Length = 332 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 165/337 (48%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HTVIGDHNSDSEIRDLA 79 M + + + + + K ++Q + + ++L ++ + D Sbjct: 1 MGDPDFWNDQQSAQQLIDQNNVLKEKYDSFNQLQAQFEELSVTLELLQEEPDDELQASFE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 ADLEQIQSQMRQ-----YELGQLLSGEYDSNNAIVELHPGAGGTESQDWGAMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + VE ++ G K + I G + ++ E GVHR+ R+ +++GR HT Sbjct: 116 ADAHGFTVETEDYQAGEEAGIKSVTLMIKGHNAYGLLRSEKGVHRLVRISPFDSAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE ID+++ ED+R+D R+SG+GGQH+N T SAVR+TH+PTGI+V + Sbjct: 176 SFCSVDVMPELDGSIDIEVRTEDLRVDVFRSSGAGGQHINKTSSAVRLTHLPTGIVVSSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +++SQ QNR AM +L+A+LY E++ A + +A + Q IG G +IR+Y F Sbjct: 236 AQRSQLQNRETAMNMLKAKLYQKEQEEQAKKAAAIKGEQLEIGWG---SQIRSYVFHPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N + V+ G +D + L ++ Sbjct: 293 MVKDHRTNYETGNGQAVMDGDLDPFMYAYLQWQLSQK 329 >gi|23099950|ref|NP_693416.1| peptide chain release factor RF-2 [Oceanobacillus iheyensis HTE831] gi|22778181|dbj|BAC14451.1| peptide chain release factor RF-2 [Oceanobacillus iheyensis HTE831] Length = 327 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 173/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M++ D K + I ++ ++ ++ ++L ++ + N DL Sbjct: 1 MADPSFWDDQNKAQSVIQETNGIKEYVNGFETIEENLENLEVSYELVKEENDQELFADLD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I + LL + D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 AELQQFITDVNQ-----FELQLLLSEPYDANNAILELHPGAGGTESQDWASMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEERNFKVETLDYLPGDEAGLKSVTLIIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V PE ++ D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT I+V Sbjct: 176 SFVSCDVTPEMSDDVDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNIIVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR AMK+L+++LY +E ++ E R Q IG G +IR+Y F Sbjct: 236 NERSQIKNREAAMKMLKSKLYQLEVEKQRQELDDIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + V+ G I+ I+ L + Sbjct: 293 MVKDHRTDKETGNTQAVMDGDINPFIDAYLRSQ 325 >gi|47093711|ref|ZP_00231463.1| peptide chain release factor 2 [Listeria monocytogenes str. 4b H7858] gi|254992782|ref|ZP_05274972.1| peptide chain release factor 2 [Listeria monocytogenes FSL J2-064] gi|47017905|gb|EAL08686.1| peptide chain release factor 2 [Listeria monocytogenes str. 4b H7858] gi|328465115|gb|EGF36383.1| peptide chain release factor 2 [Listeria monocytogenes 1816] Length = 327 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +D+ IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDEFINAYLRSR 325 >gi|322420980|ref|YP_004200203.1| peptide chain release factor 2 [Geobacter sp. M18] gi|320127367|gb|ADW14927.1| Peptide chain release factor 2 [Geobacter sp. M18] Length = 371 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + D K R E++ + + + A + + ++ ++ ++ +D+ +I Sbjct: 24 DVDDKKERMQELDELTNRPDFWNDAENAQKVLKARTAMEKDVTAWENLDRQARDIRELIE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + EV A+ E+ ++ + + D + I +G GG+E+ Sbjct: 84 LGSEEED--EATLAEVAAMNAELENGVSQAEFRRMLSGPHDASGAFVSINSGAGGTESQD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RY + W+ E+ + D G K + +G + +K ++G+HR+ R Sbjct: 142 WAEMLLRMYLRYCEKKGWRTEITDYQEGDGAGIKGVTFAATGEFAYGYLKADAGIHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSAVR 245 + ++S R HTS A+V V P E D+++ D+RIDT R+SG+GGQHVNTTDSA+R Sbjct: 202 ISPFDSSARRHTSFASVFVFPVIEEEDIEVKIAESDLRIDTYRSSGAGGQHVNTTDSAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDR 302 ITH+PTGI+V SE+SQH N+ AMKVLR++LY++E + + S K +IG G Sbjct: 262 ITHLPTGIVVACQSERSQHMNKATAMKVLRSKLYEMELREREAKASDIAGEKKEIGWG-- 319 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G +DD + P L Sbjct: 320 -SQIRSYVLHPYKMVKDLRTGVESGNPDAVLDGALDDFVVPFLM 362 >gi|218767251|ref|YP_002341763.1| peptide chain release factor 2 [Neisseria meningitidis Z2491] gi|24638158|sp|Q9JWV4|RF2_NEIMA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|121051259|emb|CAM07534.1| peptide chain release factor 2 [Neisseria meningitidis Z2491] gi|319411456|emb|CBY91871.1| peptide chain release factor II (RF-2) [Neisseria meningitidis WUE 2594] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIATGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|54023021|ref|YP_117263.1| peptide chain release factor 1 [Nocardia farcinica IFM 10152] gi|61214587|sp|Q5Z0Z2|RF1_NOCFA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|54014529|dbj|BAD55899.1| putative peptide chain release factor 1 [Nocardia farcinica IFM 10152] Length = 356 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 147/333 (44%), Positives = 202/333 (60%), Gaps = 17/333 (5%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I D+ A +E ++++ A ++ + +A ++PI++ + + + + Sbjct: 7 IDDILAEHAGLETQLADPTLHNDPSAARRVGKRFAELAPIMATYRKLESARADLTAAREL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D S EV +E+++ ELE + LL P+D D +LE+++G GG E+ Sbjct: 67 AADDAS-------FAAEVPELERQVDELEQALADLLAPRDPHDGDDVVLEVKSGEGGEES 119 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----VFSRMKFES 180 ALF DL RMY RYA R W+VEVL ++ +D GGYKE +I R V+SR KFE Sbjct: 120 ALFAADLARMYMRYAERRGWRVEVLDATVSDLGGYKEATLSIKSRDAARDGVWSRFKFEG 179 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GR+HTSAA V + PE E +V I D+RID R+SG GGQ VNT Sbjct: 180 GVHRVQRVPVTESQGRIHTSAAGVLIYPEPDEVAEVQIDESDLRIDVYRSSGKGGQGVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ E +A R QI Sbjct: 240 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQAEQEAAAGRASQIR 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYV 331 + DRSERIRTYNF + RITDHRI + L+ V Sbjct: 300 TVDRSERIRTYNFPENRITDHRIGYKSHNLDAV 332 >gi|68535523|ref|YP_250228.1| peptide chain release factor 2 [Corynebacterium jeikeium K411] gi|260579727|ref|ZP_05847586.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC 43734] gi|68263122|emb|CAI36610.1| peptide chain release factor RF-2 [Corynebacterium jeikeium K411] gi|258602157|gb|EEW15475.1| peptide chain release factor 2 [Corynebacterium jeikeium ATCC 43734] Length = 377 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 106/356 (29%), Positives = 170/356 (47%), Gaps = 9/356 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI- 66 + +L +R E+E + ++ D + + +S + SK+ +Q DL + Sbjct: 24 DLDELGDRARELEEKSADPSLWDDPDHAQQVTSELSRVQSKLKKVKGLRQRLDDLPVLYD 83 Query: 67 ---GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D + A +E+R+ + + D++ +L IR+ GG Sbjct: 84 MAEEEAGDDPDAAQEAVQLADTEREELRQEIESLEVTTMLSGEYDEREAVLNIRSAAGGV 143 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A KVEV S ++ G K I G ++ + E G H Sbjct: 144 DAADWAEMLLRMYTRWAEKAGHKVEVYDISYAEEAGIKSATIVIHGEYMYGTLSVEQGTH 203 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP +DI D+R+D R+SG GGQ VNTTDS Sbjct: 204 RLVRISPFDNQGRRQTSFAEVEVLPVVEQTDHIDIDENDVRVDVYRSSGPGGQSVNTTDS 263 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A + GS Sbjct: 264 AVRLTHVPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEEQAEMDALKGD--GSNS 321 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ++R Y + + D R N+ + VL G +D + + A+ + + Sbjct: 322 WGNQMRNYVLHPYQMVKDLRTNVEVNDPSKVLDGDLDGFLEAGIRWRMAQQQEAQA 377 >gi|16801714|ref|NP_471982.1| peptide chain release factor 2 [Listeria innocua Clip11262] gi|16415189|emb|CAC97879.1| prfB [Listeria innocua Clip11262] Length = 327 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQAELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDIKAYVATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE EI++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDDEIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|288554120|ref|YP_003426055.1| peptide chain release factor 2 [Bacillus pseudofirmus OF4] gi|288545280|gb|ADC49163.1| peptide chain release factor 2 [Bacillus pseudofirmus OF4] Length = 328 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 108/328 (32%), Positives = 175/328 (53%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D + + +++++ + +++ ++L +++ ++E Sbjct: 1 MTAPDFWDDQEAAQTVINESNGLKEQVNVFLELEEKYENLEVSYELVKEEADEELEKELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E R N+ LL + D + ILE+ G GG+E+ + L RMY R++ Sbjct: 61 AGVKELISRL--NDFELQLLLSEPYDKNNAILELHPGAGGTESQDWASMLLRMYTRWSEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETMDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE +++DI ED+++DT RASG+GGQH+NTTDSA+RITH+PT +V SE+ Sbjct: 179 SCEVMPELDDNVEIDIRTEDLKVDTYRASGAGGQHINTTDSAIRITHLPTNTVVTCQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AMK+L+A+LY +E ++ E + R Q IG G +IR+Y F + Sbjct: 239 SQIKNRDQAMKMLKAKLYQLEIEKQQQELAEIRGEQKEIGWG---SQIRSYVFHPYSLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + V+ G +D IN L Sbjct: 296 DHRTNFEIGNTNAVMDGDLDGFINAYLR 323 >gi|108804456|ref|YP_644393.1| peptide chain release factor 2 [Rubrobacter xylanophilus DSM 9941] gi|108765699|gb|ABG04581.1| bacterial peptide chain release factor 2 (bRF-2) [Rubrobacter xylanophilus DSM 9941] Length = 366 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 123/368 (33%), Positives = 190/368 (51%), Gaps = 29/368 (7%) Query: 6 HKQICDLKNRFAEIEL----------------RMSESPSVDAYIKLTEEYAAISPIISKI 49 ++I DL R E+E MS D + A S ++ Sbjct: 5 REKISDLSQRLDELEAFFDVGRLRERAARLSEEMSRPGFWDDPDRAKGVAAEFSRTEDRL 64 Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + ++ + +D ++ D E+ + + E+ IE+ I E E L D+ Sbjct: 65 KLMEELRGRLEDSSELLELAEGDRELLEEVERELEGIERRIEEQEV----ARLFTGEYDE 120 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 IL I +G GG ++ + L RMY R+A R + +EV+ ++ ++ G K ++SG Sbjct: 121 GDAILTINSGAGGVDSQDWAEMLARMYRRWAERRGFGLEVIEYTEGEEAGIKSATFSVSG 180 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMR 228 F + E GVHR+ R+ +AS R HTS A+VAV P + ++V+I +D+++DT R Sbjct: 181 PYAFGLLSAERGVHRLVRISPFDASSRRHTSFASVAVAPAIDDAVEVEIDEKDLKVDTYR 240 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQHVN TDSAVRITH+PTGI+V +E+SQHQNR A++VL+ARL+++ER++ Sbjct: 241 ASGAGGQHVNKTDSAVRITHLPTGIVVQCQNERSQHQNRETALRVLKARLFELEREKREQ 300 Query: 288 ERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 E +A K +IG G +IR+Y R + D R ++ VL G +D I L Sbjct: 301 EIAAQSGEKAEIGWG---SQIRSYVLHPYRMVKDLRTGEETGDVDRVLDGDLDRFIYAYL 357 Query: 345 TAH-QAKM 351 QA Sbjct: 358 KRRAQAAR 365 >gi|15606882|ref|NP_214263.1| peptide chain release factor 2 [Aquifex aeolicus VF5] gi|6225943|sp|O67695|RF2_AQUAE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|2984119|gb|AAC07656.1| peptide chain release factor RF-2 [Aquifex aeolicus VF5] Length = 373 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 114/353 (32%), Positives = 190/353 (53%), Gaps = 14/353 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L++ E++ +MSE + K + + ++ ++ +DL ++ Sbjct: 27 EKLESELKELDQKMSEPNFWEDQEKAKQVIQRRKWVEETLNKLKNLEKSVKDLEELVEIT 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D+E + E+ +E+ +RELE D K+ L I+AG GG+EA + Sbjct: 87 SEEDTETWAMMDEEIKEVERTLRELEL----KTYLSGEMDAKNAYLTIQAGAGGTEACDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LFRMY+R+A + ++VE++ + +D G K + + G + +K E GVHR+ R+ Sbjct: 143 ADMLFRMYKRWAEKKGYEVELIDITPDDVAGIKSVTVLVKGPYAYGYLKGEQGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R HTS A V+V+P+ E ++I ED++I+T RASG+GGQ+VN TD+AVRIT Sbjct: 203 SPFDANARRHTSFAAVSVMPQIDEDIKIEIKPEDLKIETFRASGAGGQYVNKTDTAVRIT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD--VERKRMANERSANRKLQIGSGDRSE 304 HIPTGI V E+SQ+QN+ +A+++L+A+LY +++ ++ K IG G Sbjct: 263 HIPTGITVSCQQERSQYQNKRKALELLKAKLYQLEMKKLEEKKKQYEGEKTDIGWG---H 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IR+Y F + I D R +E V+ G ID+ I L +A+ +S Sbjct: 320 QIRSYVFHPYKLIKDLRTGYETGNVEAVMDGEIDEFIESYLKW-KAQKEKESS 371 >gi|298370446|ref|ZP_06981762.1| peptide chain release factor 2 [Neisseria sp. oral taxon 014 str. F0314] gi|298281906|gb|EFI23395.1| peptide chain release factor 2 [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+++L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIDILEEDDGEIAGINRATIRLEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|251782076|ref|YP_002996378.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390705|dbj|BAH81164.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 331 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 105/336 (31%), Positives = 182/336 (54%), Gaps = 12/336 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + S + ++ + + D ++D Sbjct: 2 EHQMTEPDFWNDNIAAQKISQKLNELKSTYETFHNMQELSDETELYLEMLEEDDSVKDDL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + + + E LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 62 EASLETLGQILASYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRF 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ Sbjct: 178 SFVSVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVAST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RA+K+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAIKMLQAKLYQLEQEKKAAEVNALKGDKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N + +++ V+ G I+ I+ L + Sbjct: 295 MVKDHRTNYEVAQVDKVMDGDIEGFIDAYLKWRMSD 330 >gi|254510235|ref|ZP_05122302.1| peptide chain release factor 2 [Rhodobacteraceae bacterium KLH11] gi|221533946|gb|EEE36934.1| peptide chain release factor 2 [Rhodobacteraceae bacterium KLH11] Length = 375 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 5/333 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I Y+ K + D +I + + Sbjct: 31 RLEEFNARVEDPNLWDNPENAQKLMRERQMLVDAIETYESIKTDLSDNIELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + + + L D LEI +G GG+E+ + L R Sbjct: 91 GEVVQDAEDAIQKLRAK--SAKKELEALLDGEADSNDTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + + VE+ S + ++ G K I+G + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYTVELQSETAGEEAGIKSAAYKITGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH+PTGI Sbjct: 209 AKRHTSFCSVWVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHLPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY E R + +A + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQQELDRRNADINAAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R N + VL G +D + L Sbjct: 328 YQMVKDLRTNHETSDTKGVLDGDLDGFMAATLA 360 >gi|313669297|ref|YP_004049581.1| peptide chain release factor 2 [Neisseria lactamica ST-640] gi|313006759|emb|CBN88229.1| peptide chain release factor 2 [Neisseria lactamica 020-06] Length = 367 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVVGLSEDPELWNDQKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V + + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAGLEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|311896293|dbj|BAJ28701.1| putative peptide chain release factor 2 [Kitasatospora setae KM-6054] Length = 351 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 109/356 (30%), Positives = 173/356 (48%), Gaps = 15/356 (4%) Query: 3 FLSHK---QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 S + + ++ A +E + D + + +S + ++ + + Sbjct: 1 MSSIEAVLDLDKIRADIATLEEEAAAPTLWDDVANAQKVTSRLSFLQGELRKVETLRGRV 60 Query: 60 QDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +DL + + + D++ R A+ E+++++K + ELE L D + ++ IR Sbjct: 61 EDLGVLFELAEAEDDADTRTEAEAELVSVQKAVEELEV----RTLLSGEYDAREALVNIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 A GG +AA F L RMY R+A + EV +S ++ G K T+ + + Sbjct: 117 AEAGGVDAADFAEQLMRMYLRWAERHGYPTEVYDTSYAEEAGIKSATFTVKSPYAYGTLS 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQH 236 E G HR+ R+ + GR TS A V VLP VDI D+RID RASG GGQ Sbjct: 177 VEQGTHRLVRISPFDNQGRRQTSFAGVEVLPVVETSDHVDIDEGDLRIDVYRASGPGGQG 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ ER+A L Sbjct: 237 VNTTDSAVRITHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQE---ERAAMDAL 293 Query: 296 QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + G ++R+Y + + D R + + VL G ID I + + + Sbjct: 294 KDGGSSWGNQMRSYVLHPYQMVKDLRTEHEVGNPQGVLDGDIDGFIEAGIRWRKQR 349 >gi|257893004|ref|ZP_05672657.1| peptide chain release factor 2 [Enterococcus faecium 1,231,408] gi|257829383|gb|EEV55990.1| peptide chain release factor 2 [Enterococcus faecium 1,231,408] Length = 338 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 176/344 (51%), Gaps = 16/344 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT---VIGD 68 ++ AE E +M+E D + + + + +E +++ ++ + Sbjct: 1 MEEDIAEAEAKMAEPGFWDDSEAAQKVISENNANKETYDQFHSLAEELEEIELMVEMLQE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + E +L D + I+E+ G GG+E+ + Sbjct: 61 EPDAAMQEEAE-----TRINALDEKMKTYELSMLLDGPYDRNNAIVELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A ++VE L D+ G K + I G F +K E GVHR+ R+ Sbjct: 116 GSMLLRMYTRWAEQHGYQVETLDYQAGDEAGIKSVTLLIKGHNAFGYLKSEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS +V V+PE ID++I +D++IDT RASG+GGQH+N T+SAVRIT Sbjct: 176 SPFDSAKRRHTSFCSVDVMPELDETIDIEINPDDLKIDTYRASGAGGQHINKTESAVRIT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 H+PTG +V + +++SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G Sbjct: 236 HLPTGTVVASQAQRSQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQKEIGWG---S 292 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N+ ++ V+ G +D I+ L H Sbjct: 293 QIRSYVFHPYSMVKDHRTNVETGNVQAVMDGDLDLFIDGYLKMH 336 >gi|329120730|ref|ZP_08249392.1| peptide chain release factor RF2 [Neisseria bacilliformis ATCC BAA-1200] gi|327460527|gb|EGF06863.1| peptide chain release factor RF2 [Neisseria bacilliformis ATCC BAA-1200] Length = 417 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 102/342 (29%), Positives = 172/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K R E+ + + ++ +E + ++ + ++ + L + + Sbjct: 82 KKERLEEVIGLSEDPELWNDPKRAQEIGKERKLLEGVVLTLDNIGGGIEDNRMLIEMAVE 141 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + + + E+ + + + D +C ++I AG GG+EA + Sbjct: 142 END-----EDGFAAIESDVAELESQMAGLEFKRMFNQPADHNNCFVDITAGAGGTEAEDW 196 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E++ D + G + G + ++ E+GVHR+ R Sbjct: 197 AGMLFRMYSRYAERKGFKLEIIEEDDGEIAGINRATLRVEGEYAYGLLRTETGVHRLVRY 256 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE +++I D+R DT RASG+GGQH+N TDSAVRIT Sbjct: 257 SPFDSNNKRHTSFASVFVYPEVDDSFEIEINPADLRTDTYRASGAGGQHINKTDSAVRIT 316 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTGI+V + S +SQH+NR M++LR++L+++E ++ E+ A K +G G Sbjct: 317 HIPTGIVVQSQSSRSQHENRRIVMEMLRSKLFELEMRKRNEEKQALEEGKADVGWG---S 373 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 374 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 415 >gi|54294665|ref|YP_127080.1| hypothetical protein lpl1742 [Legionella pneumophila str. Lens] gi|53754497|emb|CAH15981.1| hypothetical protein lpl1742 [Legionella pneumophila str. Lens] Length = 335 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 169/337 (50%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + S D L E + I+ +S Q ++ +L + + + + Sbjct: 2 EEVIRELESSNVWDNPEQAQALGRERTQLETIVHSLSQLSQSISDQSELFELAREEDDEQ 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 I D+ + K I + + + + D + L+I+AG+GG+EA + L Sbjct: 62 TINDIGEE-----LKSIEQQVASLEFRRMFSGKMDHSNAYLDIQAGSGGTEAQDWAEMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+ + E++ S + G K +G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWGEHHGFTTELIECSPGEVAGIKSATIHFTGEYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V V PE + D+RIDT RASG+GGQHVN TDSAVRITHIP+G Sbjct: 177 GNRRHTSFAAVFVSPEIDDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHIPSG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +AMK LRA+LY++E ++ E+ A K IG G +IR+Y Sbjct: 237 IVVQCQNDRSQHKNKDQAMKQLRAKLYELEMQKKNAEQQALEASKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D I L A Sbjct: 294 VLDQSRIKDLRTGVETSNTQAVLDGSLDQFIEASLKA 330 >gi|77918851|ref|YP_356666.1| peptide chain release factor 2 [Pelobacter carbinolicus DSM 2380] gi|77544934|gb|ABA88496.1| bacterial peptide chain release factor 2 (bRF-2) [Pelobacter carbinolicus DSM 2380] Length = 326 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 106/330 (32%), Positives = 177/330 (53%), Gaps = 16/330 (4%) Query: 23 MSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS D + +E + +++ Q+ ++ Q L + + ++ + +++ Sbjct: 1 MSRPGFWESGDQAQDILKERTGLEKLVTSFRESQQELEDLQLLADLGAESGDEATLEEIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +++ +++ + + D I I AG GG+EA + L RMY RY Sbjct: 61 AL-----LPDLQRRVDKMEFARMLSGEHDSCDAIFSINAGAGGTEAQDWADMLLRMYMRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +K E+ D+ G K T+SG + ++ E G+HR+ R+ +++ R HT Sbjct: 116 FEKKGFKAELTDHQPGDEAGIKGATLTVSGDYAYGWLRAEIGIHRLVRISPFDSNARRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V PE +++VDI +D+++DT R+SG+GGQHVN TDSA+RITH+P+GI+V Sbjct: 176 SFCSVFVFPELPDDVEVDINEKDLKVDTYRSSGAGGQHVNKTDSAIRITHVPSGIVVACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR 315 +E+SQH+NR AMK L+ARLY++E ++ E SA K++IG G +IR+Y R Sbjct: 236 NERSQHKNRATAMKQLKARLYELELRKKEEEASAIAGEKMEIGWG---SQIRSYVLHPYR 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + DHR N + VL G +D I L Sbjct: 293 MVKDHRTNFESGNADAVLDGDLDGFIEAYL 322 >gi|83311912|ref|YP_422176.1| peptide chain release factor 2 [Magnetospirillum magneticum AMB-1] gi|123541518|sp|Q2W3F8|RF2_MAGMM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|82946753|dbj|BAE51617.1| Protein chain release factor B [Magnetospirillum magneticum AMB-1] Length = 371 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 160/345 (46%), Gaps = 16/345 (4%) Query: 15 RFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + K+ E + I +++ + +L + Sbjct: 31 RLDELNASAENPDLWNDAGAAQKIMRERNELDSAIQGCRALERELADLAELIELGEMEGD 90 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + I D + E+ + L D C +EI AG GG+E+ + Sbjct: 91 QTVIDDAEEQVRALKERAAKM-----ELETLLSGEADHNDCYMEINAGAGGTESQDWAEM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A +KVE L S + G K I G + +K ESGVHR+ R+ Sbjct: 146 LLRMYTRWAEKHGYKVEWLEESAGEQAGIKSATIRILGHNAYGWLKTESGVHRLVRISPY 205 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++ V P ID+ I + RIDT RASG+GGQH+N TDSAVRITHIP Sbjct: 206 DSAARRHTSFSSAWVYPVIDDTIDIQINESECRIDTYRASGAGGQHINKTDSAVRITHIP 265 Query: 251 TGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIR 307 TGI + E+SQHQNR RA +LRARLY+ E ++ ++K IG G +IR Sbjct: 266 TGIAVACQMERSQHQNRARAWDMLRARLYEAELQKREAAAQALEDQKTDIGWG---HQIR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + + D R N+ + VL G +D + L A Sbjct: 323 SYVLQPYQMVKDLRTNVETSDTQGVLDGDLDMFMAASLAARVQGQ 367 >gi|311031920|ref|ZP_07710010.1| peptide chain release factor 2 [Bacillus sp. m3-13] Length = 326 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 162/331 (48%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS + + + + + + Q + ++ + +L Sbjct: 1 MSNPEFWNNQSSAQVVINEANALKEPVGQFHELSENYENLQLTYELVKEEPDAELQAELG 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E + LL D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKTVAEDFNK-----FELQLLLSGEHDKNNAILELHPGAGGTESQDWGSLLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AERKGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PT ++V Sbjct: 176 SFVSCEVMPEFDDNIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTNVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F Sbjct: 236 TERSQIKNRERAMKMLQAKLYQKKLDEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + + V+ G +D I+ L Sbjct: 293 MVKDHRTNTEVGNTQAVMDGDLDPFIDAYLR 323 >gi|71733798|ref|YP_276012.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. phaseolicola 1448A] gi|71554351|gb|AAZ33562.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. phaseolicola 1448A] Length = 368 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + + + +L E + ++ I+ + + +DL + Sbjct: 31 DHKHDRLTEVNRELEDPNVWNNPTYAQELGRERSLLAQIVETLDEMSSGLADAKDLLLMS 90 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + D+A E + + + + D + L+I+AG+GG+EA Sbjct: 91 AEEEDQAAVDDVAAEVERLRESLEK-----LEFRRMFSGEMDPNNAYLDIQAGSGGTEAQ 145 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + ++ S + G K I G F ++ E GVHR+ Sbjct: 146 DWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 205 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 206 RKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGGQHVNTTDSAVR 265 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + + K IG G Sbjct: 266 ITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALEDTKSDIGWG-- 323 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 324 -HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 366 >gi|225868809|ref|YP_002744757.1| peptide chain release factor 2 [Streptococcus equi subsp. zooepidemicus] gi|225702085|emb|CAW99717.1| peptide chain release factor 2 [Streptococcus equi subsp. zooepidemicus] Length = 338 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 187/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + + + ++ + + ++ + + + Sbjct: 1 MEEDIALLENKMTEPDFWNDNMAAQKTSQELNELKLTYQTFHNMQELSDETELYLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + + + + + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSVKEELEASLTRLSQMLASYE----MTLLLSEPYDHSNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY R+ + +KVE L D+ G K + +I G + +K E GVHR+ R+ Sbjct: 117 LFRMYTRFGNAKGFKVETLDYQAGDEAGIKSVTLSIEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFVSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTNFEVAQVDKVMDGDIEGFIDAYLKWRMGE 337 >gi|25010633|ref|NP_735028.1| peptide chain release factor 2 [Streptococcus agalactiae NEM316] gi|23094987|emb|CAD46208.1| Unknown [Streptococcus agalactiae NEM316] gi|319744591|gb|EFV96943.1| peptide chain release factor RF2 [Streptococcus agalactiae ATCC 13813] Length = 337 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 187/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + I + ++ + K + ++ + ++ + Sbjct: 1 MEEEIALLENQMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDL 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 294 SYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 337 >gi|255066677|ref|ZP_05318532.1| peptide chain release factor 2 [Neisseria sicca ATCC 29256] gi|255049005|gb|EET44469.1| peptide chain release factor 2 [Neisseria sicca ATCC 29256] Length = 367 Score = 220 bits (560), Expect = 2e-55, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 175/342 (51%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + ++ +E + I+ + ++ + L + + Sbjct: 32 KKDRLEEVIGLSEDPELWNDPKRAQEIGKERKILEGIVLTLDNIASGIEDNRMLIEMTVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + V E+ + ++ + + D +C ++I AG GG+EA + Sbjct: 92 ENDEE-----GFAAVQEDVAELEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G LFRMY RYA + +K+E+L D + G + G + ++ E+GVHR+ R Sbjct: 147 AGMLFRMYSRYAERKGFKIEILEEDDGEIAGINRATIRVEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE + +++I D+RIDT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFASVFVYPEIDDSIEIEINPADLRIDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQH N+ AM++L+++LY++E ++ E+ A K +G G Sbjct: 267 HEPTGIVVQCQNDRSQHANKAAAMEMLKSKLYELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTGYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|84684982|ref|ZP_01012882.1| peptide chain release factor 2 [Maritimibacter alkaliphilus HTCC2654] gi|84667317|gb|EAQ13787.1| peptide chain release factor 2 [Rhodobacterales bacterium HTCC2654] Length = 375 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 115/344 (33%), Positives = 175/344 (50%), Gaps = 11/344 (3%) Query: 13 KNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++R E+ + + KL E ++ + +Q+K + +L + Sbjct: 29 EHRLEELNAMTEDPELWNDPDRAQKLMRERQSLVAQMDGYKAMEQEKNDSVELIELGEME 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D ++D K ++E L D LE+ +G GG+E+ + Sbjct: 89 DDDEVVKDAEAA-----LKALKERAAAAEIEALLNGEADPNDTFLEVHSGAGGTESCDWA 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A +KVE+ S++ ++ G K ISG + +K ESGVHR+ R+ Sbjct: 144 SMLARMYVRWAEAHGYKVELQSTTPGEEAGIKSATYKISGHNAYGWLKSESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS ++V V P I+V++ DIRIDT R+SG+GGQHVNTTDSAVRITH Sbjct: 204 PYDSAARRHTSFSSVWVYPVVDDNIEVEVAPNDIRIDTYRSSGAGGQHVNTTDSAVRITH 263 Query: 249 IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 IPTGI+VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+ Sbjct: 264 IPTGIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNQAINEAHENK-GDAGWGNQIRS 322 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 Y + + D R + + VL G +D ++ L A Sbjct: 323 YVLQPYQMVKDLRTSFETSDTQGVLDGDLDGLMAATLAMDVAGK 366 >gi|227549373|ref|ZP_03979422.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM 44291] gi|227078558|gb|EEI16521.1| peptide chain release factor 2 [Corynebacterium lipophiloflavum DSM 44291] Length = 365 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 164/346 (47%), Gaps = 10/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L R E+E + ++ D + +S + +++ ++ DL + Sbjct: 24 DLDELAARARELEQQANDPSLWDDPAHAQKVTTELSNVQARLKKVASLRERIDDLPVMYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + E V + E + + D++ ++ IR+G GG +AA Sbjct: 84 LAEEEGEP-----ALVDDELAALEESIGSLEVQTMLSGEYDEREAVVNIRSGAGGVDAAD 138 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KVEV S ++ G K + G ++ ++ E G HR+ R Sbjct: 139 WAEMLMRMYTRWAEKNGHKVEVYDISYAEEAGIKSATFVVRGEYMYGQLSVEQGAHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +DIP DIR+D R+SG GGQ VNTTDSAVRI Sbjct: 199 ISPFDNQGRRQTSFAEVEVLPVVEQTDHIDIPDSDIRVDVYRSSGPGGQSVNTTDSAVRI 258 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +EKSQ QN+ A+ VL+++L + +R+ E A G+ + Sbjct: 259 THLPTGIVVTCQNEKSQIQNKASALGVLQSKLLERKRQEEKAEMDAL--GAGGNASWGNQ 316 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R N + + VL G ID + + A+ Sbjct: 317 MRSYVLHPYQMVKDLRTNYEVGDPQKVLDGDIDGFLESGIRWRMAE 362 >gi|157693929|ref|YP_001488391.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032] gi|157682687|gb|ABV63831.1| peptide chain release factor RF2 [Bacillus pumilus SAFR-032] Length = 327 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 171/328 (52%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MSE+ + K + + ++ Y + + ++L D + ++E Sbjct: 1 MSEADFWNDQQKAQGVINEANALKDNVNAYHELSESHEELQMTHDLLKEDYDEELHVELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E E+ L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 KELKNLTKQFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE E D+DI EDI++DT RASG+GGQHVNTTDSAVRITHIPT ++V +E+ Sbjct: 179 SCDVMPEFNEEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHIPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+++LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRERAMKMLKSKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G +D I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDLDSFIDAYLR 323 >gi|159043721|ref|YP_001532515.1| peptide chain release factor 2 [Dinoroseobacter shibae DFL 12] gi|157911481|gb|ABV92914.1| peptide chain release factor 2 [Dinoroseobacter shibae DFL 12] Length = 375 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 110/339 (32%), Positives = 168/339 (49%), Gaps = 5/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E + + + + + + ++ + Y+ KQE +D +I +++ Sbjct: 31 RLEEFDAMIEDPNLWNDQARAQKLMRDRQMLVDAMKTYEGIKQELEDNIELIELGEMEAD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + L D LEI +G GG+E+ + L R Sbjct: 91 AEVVTDAEEALKSLAETA--AKKEIEALLDGEADGNDTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + + VE+ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEAKGYTVELQSQSPGEEAGIKSAAYKISGPNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS ++V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH+PTGI Sbjct: 209 ARRHTSFSSVWVYPVVDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHVPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 + TSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 269 VTTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R VL G +D +++ L A Sbjct: 328 YQMVKDLRTGYETSDTAGVLDGDLDGLMSATLAQQVAGK 366 >gi|104780459|ref|YP_606957.1| peptide chain release factor 2 [Pseudomonas entomophila L48] gi|95109446|emb|CAK14147.1| peptide chain release factor 2 [Pseudomonas entomophila L48] Length = 364 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 172/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +R E+ + ++ + L E A ++ ++ + + QDL + Sbjct: 27 DHKHDRLVEVNRELEDAAVWNKPEYAQALGRERAMLAQVVETLDKLSGGLADCQDLLDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + D+ + + E ++ + + D + L+I+AG+GG+EA Sbjct: 87 VEENDEGAVGDVVTE-----LEGLEEKLAQLEFRRMFSGEMDMNNAYLDIQAGSGGTEAQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R + ++ S+ + G K I G F ++ E GVHR+ Sbjct: 142 DWANILLRMYLRWADKRGFDATIIELSEGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVR Sbjct: 202 RKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPSDLRIDTYRSSGAGGQHVNTTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITH+PT +V +E+SQH N+ AMK+LRA+LY++E ++ + + K IG G Sbjct: 262 ITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELEMQKRNAASQALEDSKSDIGWG-- 319 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D + L Sbjct: 320 -HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLDQYLEASLKQ 362 >gi|259046384|ref|ZP_05736785.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175] gi|259036929|gb|EEW38184.1| peptide chain release factor 2 [Granulicatella adiacens ATCC 49175] Length = 361 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 169/345 (48%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYA---AISPIISKISIYDQKKQEEQDLHT 64 + L+ A E MSE D K + + I + +E L Sbjct: 12 DLDRLEEDIAAYEQEMSEPSFWDDSEKANQVIQKNNELKSIYDTFHKMELAHEETSLLFE 71 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + ++ + + + +L D S ILEI G GG+E Sbjct: 72 MYKEEPDEEVHAEIVEAIQ-----SLEKDLQRYELSMLLNGPHDKNSAILEIHPGAGGTE 126 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A ++VE + D D+ G K + +I G + ++ E GVHR Sbjct: 127 SQDWGSMLLRMYMRWAEKHGYRVETVDYQDGDEAGIKSVTLSIEGLNAYGYLRSEKGVHR 186 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+G+ HTS +V V+P+ +ID++I +D+++D RASG+GGQH+N T SA Sbjct: 187 LVRISPFDAAGKRHTSFCSVDVVPQMDGDIDIEINPDDLKVDVYRASGAGGQHINKTSSA 246 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+ + +++SQ +NR +AM +L+A+L+ +E ++ A E +A R Q Sbjct: 247 VRITHIPTGIVTQSQAQRSQFKNRDQAMAMLKAKLFQLEEEKKAAELAAIRGEQ-KDIAW 305 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + D R + V+ G +D ++ L Sbjct: 306 GSQIRNYVFHPYSMVKDLRSGYETGNIGAVMDGDLDSFMDAYLKW 350 >gi|115311855|sp|Q49VV3|RF2_STAS1 RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 373 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 175/353 (49%), Gaps = 17/353 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + E E M++ D K + A+ +++ + + ++ Sbjct: 25 DLEAKETNIQEYEEMMTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRA 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + ++ +DL Q + + LL D + I+E+ G GG+E Sbjct: 85 LLLEEDDETMKQDLEQSVQDFKNELDQ-----FELQLLLDGPYDANNAIMELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+RY + + VE+ D+ G K + + G + +K E GVHR Sbjct: 140 SQDWTNMLLRMYQRYCEQKGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ ++DI +DI +DT RASG+GGQH+N T+S Sbjct: 200 LVRISPFDSSGRRHTSFASCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTES 259 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH PTGI+V +E+SQ +NR AMK L+++LY ++ + E + R Q IG Sbjct: 260 AIRITHHPTGIVVNNQNERSQIKNREAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGW 319 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 G +IR+Y F + DHR N K++ V+ G I I L + + Sbjct: 320 G---SQIRSYVFHPYAMVKDHRTNEETGKVDAVMDGDIGPFIEAFLRSQMDQH 369 >gi|306825598|ref|ZP_07458937.1| peptide chain release factor RF2 [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|304431959|gb|EFM34936.1| peptide chain release factor RF2 [Streptococcus sp. oral taxon 071 str. 73H25AP] Length = 329 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VEQLTELDKMMANYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLFFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVSQVDKVMDGDLDGFIDAYLKWR 327 >gi|154687644|ref|YP_001422805.1| hypothetical protein RBAM_032440 [Bacillus amyloliquefaciens FZB42] gi|154353495|gb|ABS75574.1| PrfB [Bacillus amyloliquefaciens FZB42] Length = 327 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 115/328 (35%), Positives = 169/328 (51%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + K + + ++ Y Q + ++L + + ++E Sbjct: 1 MAEPEFWNDQQKAQTVINEANGLKEYVNSYHQLSESHEELQMTHDLLKEEPDQDLQQELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E+ L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 KELKSLTKELNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE E D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V +E+ Sbjct: 179 SCEVMPEFNEEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRDRAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDIDIFIDAYLR 323 >gi|221633612|ref|YP_002522838.1| peptide chain release factor 2, programmed frameshift [Thermomicrobium roseum DSM 5159] gi|254790922|sp|B9L0E3|RF2_THERP RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|221155396|gb|ACM04523.1| peptide chain release factor 2, programmed frameshift [Thermomicrobium roseum DSM 5159] Length = 374 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 112/342 (32%), Positives = 178/342 (52%), Gaps = 8/342 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + ++E ++ + +S + + ++ Q+ +DL + Sbjct: 25 LPSKRQQIEQLEHEAADPDLWQDPQRAQSLLRRLSQLRDLVQEWETLSQQARDLLELRAL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D E+ + E + + +R+LE LL D IL + AGTGG +A + Sbjct: 85 ASDDLELAGQVEQEATELAERVRQLEL----RLLLTGQYDGHDAILAVHAGTGGVDAQDW 140 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + EV+ + ++ G K + G + +K E+G HR+ R+ Sbjct: 141 AEMLLRMYLRWAQRAGFAAEVVDLLEGEEAGIKSATVEVRGPYAYGYLKGEAGTHRLVRL 200 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R HTS A V VLP + DV+I EDIRIDT RASG GGQHVN T+SAVRIT Sbjct: 201 SPFDAAHRRHTSFALVEVLPLVEEDDDVEIREEDIRIDTFRASGHGGQHVNKTESAVRIT 260 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQ QNR AMK+L+ARL +++ ++ E++ + + +G RI Sbjct: 261 HLPTGIVVTCQNERSQIQNRETAMKILKARLLELKIRQRQEEQARLKGKPVVTG-WGNRI 319 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y +TDHR ++ ++ VL+G ID I L Sbjct: 320 RSYVLHPYTMVTDHRTEVSTPNIQAVLEGEIDPFIEAYLHQQ 361 >gi|152991276|ref|YP_001356998.1| peptide chain release factor 2 [Nitratiruptor sp. SB155-2] gi|166225114|sp|A6Q582|RF2_NITSB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|151423137|dbj|BAF70641.1| peptide chain release factor 2 [Nitratiruptor sp. SB155-2] Length = 368 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 188/360 (52%), Gaps = 23/360 (6%) Query: 6 HKQICDLK---------NRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYD 53 ++I ++K R EIE + + K + +E +S I+ K Sbjct: 14 EQKIENIKNIIKPDLITKRLKEIEQLENSPDFWNDAKKAGEIQKEKNRLSRILEKFEEAR 73 Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 ++ +DL + + + + E N+I + +DDK+ I Sbjct: 74 SSVEDAKDLFEMATEEEDTE-----TLNMLFEEAPTLEEKVNKIEIETMLSGENDDKNAI 128 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 + I G GG+E+ + L+RMY R+A +KVEVL + ++ G K++ I G + Sbjct: 129 VTIHPGAGGTESQDWASILYRMYLRWAERHGFKVEVLDYQEGEEAGIKDVSFIIKGENAY 188 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGS 232 +K E+G+HR+ R+ +++ R HTS A+V V PE + I +DIR+DT RASG+ Sbjct: 189 GYLKAENGIHRLVRISPFDSNARRHTSFASVMVSPEVDDDINIVIEDKDIRVDTYRASGA 248 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN TDSA+RITHIPTGI+V +++SQH+NR AMK+L++RLY++E ++ E+ Sbjct: 249 GGQHVNKTDSAIRITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLYELELEKKRAEQEG 308 Query: 292 NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 K IG G +IR+Y + ++ D R N +E +L G ID II +L A K Sbjct: 309 IEKSDIGWG---HQIRSYVLAPYQQVKDTRSNKAYSNVEAILDGDIDKIIEDVLIAEAEK 365 >gi|295115079|emb|CBL35926.1| bacterial peptide chain release factor 2 (bRF-2) [butyrate-producing bacterium SM4/1] Length = 333 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 172/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D +L E + + +Q+ ++ Q + + + N S I + Sbjct: 1 MEEPGFWDDPEMSTRLMREAKNLKDTVESYRKLEQEYEDIQVMLEMGYEENDPSLIPE-- 58 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ + +LE LL + D+ + IL++ AG GG+EA + L+RMY+R+ Sbjct: 59 --IQGMMDDFVEKLEAIRIQTLLSGEYDN-NNAILKLNAGAGGTEACDWCSMLYRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + + V+ D ++ G K I I+G + +K E GVHR+ R+ ++G+ T Sbjct: 116 ADKKGFTTAVIDYLDGEEAGIKSITLQINGENAYGFLKSERGVHRLVRISPFNSAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+P+ E DV++ +++RIDT R+SG+GGQH+N T SA+RITH+PTGI+V Sbjct: 176 SFVSCDVMPDIKEDLDVEVNPDELRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ AM++L+ +LY ++++ A + S R + + +IR+Y + Sbjct: 236 NERSQFQNKEVAMQMLKTKLYMMKQEEHAEKLSDIR-GDVKDINFGNQIRSYVMQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR + VL G ID I+ L Sbjct: 295 KDHRTGAESGNVNAVLDGDIDLFISAYLKW 324 >gi|254831068|ref|ZP_05235723.1| peptide chain release factor 2 [Listeria monocytogenes 10403S] Length = 327 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 175/333 (52%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + + + + + ++E++ + ++ + + +L Sbjct: 1 MLDPNFWNDQQAAQKVINESNVYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L+ D D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 KDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KVE+L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 SEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V Sbjct: 176 SFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+ +LY E++ E + R Q IG G +IR+Y F Sbjct: 236 SERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N ++ V+ G +DD IN L + Sbjct: 293 MVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 325 >gi|294084599|ref|YP_003551357.1| protein chain release factor B [Candidatus Puniceispirillum marinum IMCC1322] gi|292664172|gb|ADE39273.1| Protein chain release factor B [Candidatus Puniceispirillum marinum IMCC1322] Length = 369 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 114/343 (33%), Positives = 175/343 (51%), Gaps = 18/343 (5%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-IGDH 69 R ++E + + + + E + I+ I + + L + I + Sbjct: 30 ARLNDLEAQTTMPDFWNDQAVAQDVMREKNRLERQINLIKDMQAEMDDCVALIELGIAEG 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D A + L E + R+LE L D C LEI AG GG+EA + Sbjct: 90 DDDVVAEAEAVLTKLVTEADKRQLE------SLLSGEADANDCFLEIHAGAGGTEAQDWA 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+ R +KV ++ S ++ G K + I G + +K ESGVHR+ R+ Sbjct: 144 QMLVRMYGRWCEQRGYKVHLIEESAGEEAGIKSVTMRIDGENAYGWLKTESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++S R HTS A+ V P I++++ +D+RIDT RASG+GGQHVN TDSA+RITH Sbjct: 204 PYDSSARRHTSFASAWVYPVVDDNIEIEVEDKDLRIDTYRASGAGGQHVNKTDSAIRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSER 305 +PT I+V +++SQH+NR A +L+ARLY++E ++ A +A K IG G+ + Sbjct: 264 LPTNIVVQCQNDRSQHRNRATAFNMLKARLYELELQKREEAASDAAASKTDIGWGN---Q 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + D R N+ + VL G +D I L A Sbjct: 321 IRSYVLHPYQMVKDLRTNVEKGNAQGVLDGDLDSFIEASLAAR 363 >gi|227486869|ref|ZP_03917185.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum ATCC 51867] gi|227541969|ref|ZP_03972018.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum ATCC 51866] gi|227092943|gb|EEI28255.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum ATCC 51867] gi|227182412|gb|EEI63384.1| peptide chain release factor 2 [Corynebacterium glucuronolyticum ATCC 51866] Length = 366 Score = 220 bits (560), Expect = 3e-55, Method: Composition-based stats. Identities = 109/346 (31%), Positives = 164/346 (47%), Gaps = 9/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R E+EL ++ D + + +S S + +Q DL + Sbjct: 24 DLDALAERARELELTAADPTLWDDPTNAQKVTSDLSHTQSTLKKVRALRQRVDDLPVMYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + E +LA E + + I +E + D++ ++ IR+G GG +AA Sbjct: 84 LAEEEGEGTELADDERADLRQAIESMEVQTM----LSGEYDERDAVVTIRSGAGGVDAAD 139 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV+V +S ++ G K +S ++ + E G HR+ R Sbjct: 140 WAEMLMRMYIRWAEKEGHKVQVFDTSYAEEAGIKSATFQVSDPYMYGTLSVEQGTHRLVR 199 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVRI Sbjct: 200 ISPFDNQARRQTSFAEVEVLPVVEKTDHIDIPDSDVRVDVYRSSGPGGQSVNTTDSAVRI 259 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QNR AM VL++RL + +R+ E A G + Sbjct: 260 THIPTGIVVTCQNEKSQIQNRASAMAVLQSRLLERKRQEEQAEMDAL--GAGGEASWGNQ 317 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R N + VL G ID + + A+ Sbjct: 318 MRSYVLHPYQMVKDLRTNYEVGDPSKVLDGDIDGFLEAGIRWRMAE 363 >gi|322372865|ref|ZP_08047401.1| peptide chain release factor 2 [Streptococcus sp. C150] gi|321277907|gb|EFX54976.1| peptide chain release factor 2 [Streptococcus sp. C150] Length = 337 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 187/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E RM+E + I + ++ + K ++ ++ + + Sbjct: 1 MEEDIALLENRMTEPDFWNDNIAAQKTSQELNELKMKYETFNNMQELSDETELYLEMLEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 DS +++ + + ++K + E LL + D + ILEI G+GG+EA + Sbjct: 61 DSSVQEELEETLEKLDKIMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+RY + +KVE L D+ G K + G + +K E GVHR+ R+ Sbjct: 117 LLRMYQRYGNAKGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIEGFIDAYLKWRMEE 337 >gi|163747048|ref|ZP_02154404.1| peptide chain release factor 2 [Oceanibulbus indolifex HEL-45] gi|161379609|gb|EDQ04022.1| peptide chain release factor 2 [Oceanibulbus indolifex HEL-45] Length = 374 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 171/335 (51%), Gaps = 9/335 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E R+ + D + ++ I Y+ KQE D +I + D Sbjct: 31 RLEEFNARVEDPNLWDNPDAAQKLMRERQSLVDAIDTYEGIKQELADNVELIELGEMEGD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E+ A++ + ++ + E L D LEI +G GG+E+ + L Sbjct: 91 EEVIKEAEVALKSLAATAAQKEL----EALLNGEADSNDTFLEINSGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A + +KV++ + S ++ G K I G + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKKGYKVDLQAESAGEEAGIKSATYKIEGHNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFTSVKVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDKRSALVNEAHENA-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R N + VL G +D ++ L Sbjct: 326 QPYQMVKDLRTNYETSDTKGVLDGDLDGLMGATLA 360 >gi|291326803|ref|ZP_06125920.2| peptide chain release factor 2 [Providencia rettgeri DSM 1131] gi|291312658|gb|EFE53111.1| peptide chain release factor 2 [Providencia rettgeri DSM 1131] Length = 320 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 106/324 (32%), Positives = 176/324 (54%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ I+ I Q ++ + L + + D + + A+ E+ + Sbjct: 3 NEPERAQALGKERSSLEAIVETIDQMTQGLEDVEGLLELAVEA-DDEDTFNEAEAELEQL 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E ++ +LE + + D C ++++AG+GG+EA + L RMY R+A + +K Sbjct: 62 EGKLEQLE----FRRMFSGEYDSADCYIDLQAGSGGTEAQDWASMLLRMYLRWAESKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ SD D G K I G + ++ E+GVHR+ R ++ GR HTS ++ + Sbjct: 118 TEIIEESDGDVAGLKSATVKIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFI 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+ Sbjct: 178 YPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AM+ L+A+LY++E ++ ++ K IG G +IR+Y RI D R Sbjct: 238 NKDQAMRQLKAKLYELEMQKKNADKQAMEENKSDIGWG---SQIRSYVLDDARIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D I L A Sbjct: 295 VETRNTQAVLDGDLDKFIEASLKA 318 >gi|308175261|ref|YP_003921966.1| peptide chain release factor 2 [Bacillus amyloliquefaciens DSM 7] gi|307608125|emb|CBI44496.1| peptide chain release factor 2 [Bacillus amyloliquefaciens DSM 7] gi|328555234|gb|AEB25726.1| peptide chain release factor 2 [Bacillus amyloliquefaciens TA208] gi|328913595|gb|AEB65191.1| peptide chain release factor 2 [Bacillus amyloliquefaciens LL3] Length = 327 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 114/328 (34%), Positives = 168/328 (51%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + K + + ++ Y Q + ++L + + ++E Sbjct: 1 MAEPEFWNDQQKAQTVINEANGLKDYVNSYHQLSESHEELQMTYELLKEEPDQELQQELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E+ L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 KELKSLTKELNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGCKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE E D++I EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V +E+ Sbjct: 179 SCEVMPEFNEEIDIEIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRDRAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I+ L Sbjct: 296 DHRTNTEMGNVQAVMDGDIDIFIDAYLR 323 >gi|224035189|gb|ACN36670.1| unknown [Zea mays] Length = 301 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 161/299 (53%), Positives = 219/299 (73%), Gaps = 2/299 (0%) Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L +++ + + + ++R++A+ E+L +E + L++E+ LLPKD D+K CILE+RAG Sbjct: 2 EGLKSLVANDHEEKDMREMAEEELLVAVEEEKRLQHELFRSLLPKDEADEKDCILEVRAG 61 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 TGG EA+LF D+FRMYE+YA WK +V+ ++ GYKE TISG G F ++KFE Sbjct: 62 TGGEEASLFAMDIFRMYEKYAQKNGWKFDVIDIMESAVKGYKEASGTISGPGAFGKLKFE 121 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SG+HRVQRVPATE SGR+HTSA +VAVLP+A E+DV + ED+RIDT R+ GSGGQ VNT Sbjct: 122 SGIHRVQRVPATEKSGRMHTSAVSVAVLPQADEVDVQLRNEDLRIDTYRSGGSGGQSVNT 181 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITHIPTG +V E+SQH N+ +A+KVLRARLY++ER+R+ +RS R QIG Sbjct: 182 TDSAVRITHIPTGTVVAIQDERSQHMNKAKALKVLRARLYELERRRLHMDRSKLRSEQIG 241 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 SGDRSERIRTYNF QGR+TDHR+ +T + + V++G +D ++ LL + I S Sbjct: 242 SGDRSERIRTYNFPQGRVTDHRVGVTHHSIADVMEGESLDMFVDALLLQEEMDAIASFG 300 >gi|119947032|ref|YP_944712.1| peptide chain release factor 2 [Psychromonas ingrahamii 37] gi|119865636|gb|ABM05113.1| bacterial peptide chain release factor 2 (bRF-2) [Psychromonas ingrahamii 37] Length = 329 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 166/332 (50%), Gaps = 15/332 (4%) Query: 21 LRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 + + L +E +A+ ++ I ++ L + + N + Sbjct: 3 RELESPEVWSEPERAQALGKERSALELVVDTIDALSAGTEDILMLVEMATEENDQDSFDE 62 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + E+ + + + + D SC L+I++G+GG+EA + L RMY Sbjct: 63 AQKE-----VNELEKKLEVLEFRRMFSGNHDACSCYLDIQSGSGGTEAQDWANILLRMYL 117 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+ +K E++ S D G K +G F ++ E+GVHR+ R ++SGR Sbjct: 118 RWGEAHGYKTELMEVSAGDVAGIKGATIRFTGEYAFGWLRTETGVHRLVRKSPFDSSGRR 177 Query: 198 HTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS A+ + PE + D+ I D+RID RASG+GGQHVNTT+SAVRITH+PT I+V Sbjct: 178 HTSFASAFIYPEIEDDIDIQINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNIVVQ 237 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQ 313 +++SQH+N+ +AMK L+A+LY+ E ++ E S + K IG G +IR+Y Sbjct: 238 CQNDRSQHKNKDQAMKQLKAKLYEHELQKQNAEKQISEDSKSDIGWG---SQIRSYVLDD 294 Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 295 ARIKDLRTGIESRNTQAVLDGGLDKFIEASLK 326 >gi|52842005|ref|YP_095804.1| peptide chain release factor 2 [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148359322|ref|YP_001250529.1| peptide chain release factor 2 [Legionella pneumophila str. Corby] gi|296107369|ref|YP_003619069.1| Protein chain release factor B [Legionella pneumophila 2300/99 Alcoy] gi|52629116|gb|AAU27857.1| peptide chain release factor 2 (RF-2) [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|148281095|gb|ABQ55183.1| peptide chain release factor 2 (RF-2) [Legionella pneumophila str. Corby] gi|295649270|gb|ADG25117.1| Protein chain release factor B [Legionella pneumophila 2300/99 Alcoy] gi|307610478|emb|CBX00050.1| hypothetical protein LPW_18051 [Legionella pneumophila 130b] Length = 335 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 111/337 (32%), Positives = 170/337 (50%), Gaps = 15/337 (4%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E+ + S D L E + I+ +S Q ++++L + + + + Sbjct: 2 EEVIRELESSNVWDNPEQAQALGRERTQLETIVHSLSQLSQSISDQRELFELAREEDDEQ 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 I D+ + K I + + + + D + L+I+AG+GG+EA + L Sbjct: 62 TINDIGEE-----LKSIEQQVASLEFRRMFSGKMDHSNAYLDIQAGSGGTEAQDWAEMLL 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+ + E++ S + G K +G F ++ E+GVHR+ R ++ Sbjct: 117 RMYLRWGEHHGFTTELIECSPGEVAGIKSATIHFTGEYAFGWLRTETGVHRLVRKSPFDS 176 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V V PE + D+RIDT RASG+GGQHVN TDSAVRITHIP+G Sbjct: 177 GNRRHTSFAAVFVSPEIDDDIEIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHIPSG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+V +++SQH+N+ +AMK LRA+LY++E ++ E+ A K IG G +IR+Y Sbjct: 237 IVVQCQNDRSQHKNKDQAMKQLRAKLYELEMQKKNAEQQALEASKSDIGWG---SQIRSY 293 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q RI D R + + VL G +D I L A Sbjct: 294 VLDQSRIKDLRTGVETSNTQAVLDGSLDQFIEASLKA 330 >gi|163784774|ref|ZP_02179571.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1] gi|159879956|gb|EDP73663.1| peptide chain release factor RF-2 [Hydrogenivirga sp. 128-5-R1-1] Length = 348 Score = 220 bits (559), Expect = 3e-55, Method: Composition-based stats. Identities = 113/342 (33%), Positives = 181/342 (52%), Gaps = 10/342 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D+K + E++ MS + K + A + + K+ + +++ + Sbjct: 3 LEDIKQKLKELDEIMSSPDFWNDQKKAQKISAERTYLSDKLEKLNNIEEKIN--YLEEYI 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E + A+ ++ K + L N+ L D K+ I+ ++AG+GG EA + Sbjct: 61 ELLELEPDEEAKQDLENEIKNLETLINKFEVESLLSGEYDSKNAIVSVQAGSGGVEACDW 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + VE++ +D G K + G + ++ E GVHR+ R+ Sbjct: 121 AEMLLRMYLRWAEKNGYNVEIVDYQPDDVAGIKSATFIVKGPYAYGYLQGEQGVHRLVRI 180 Query: 189 PATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS A V+V+PE EI V+I +D+RIDT RASG+GGQHVN TDSAVRIT Sbjct: 181 SPFDSNKRRHTSFAAVSVIPEIGEEIKVEINEDDLRIDTFRASGAGGQHVNKTDSAVRIT 240 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSE 304 HIPTGI+V SE+SQ QNR +AM++L+A+LY +E ++ +R K +I G Sbjct: 241 HIPTGIVVSCQSERSQIQNRAKAMQMLKAKLYQLEIEKQKEKRKELEGEKKEISWG---S 297 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + + D R ++ V+ G ID + L Sbjct: 298 QIRSYVFHPYQMVKDLRTGYETGNIQAVMDGEIDSFMETYLK 339 >gi|262198721|ref|YP_003269930.1| hypothetical protein Hoch_5555 [Haliangium ochraceum DSM 14365] gi|262082068|gb|ACY18037.1| conserved hypothetical protein [Haliangium ochraceum DSM 14365] Length = 378 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 168/345 (48%), Gaps = 6/345 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + R E+E ++ D K + + I + YD+ + D ++ Sbjct: 35 DVDEKRLRIEELESISADPAFWDNRQKAEDSLRELKSIKDVVGSYDKLSSKLADAVVLLE 94 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A E E E + + D +L+I +G GG +AA Sbjct: 95 LAEDAEDAESAIEARTAAEEIERSLDEL--EFRRMLSGEYDQGGAVLQINSGAGGVDAAD 152 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RM RYA + WK EVL ++ G K I+G + +K E GVHR+ R Sbjct: 153 WAQMLLRMILRYADHKGWKAEVLDEQAAEEAGIKSATLVITGEYAYGLLKAEMGVHRLVR 212 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A R TS A V V P+ + VDI ++RID RA G+GGQHVN T+SAVRI Sbjct: 213 ISPFDAQARRQTSFAAVTVSPDIDDSVHVDIDEGELRIDVYRAGGAGGQHVNKTESAVRI 272 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+P+GI+V +E+SQH+N+ AM+VLR+RLYD + + + + + Sbjct: 273 THLPSGIVVQCQNERSQHKNKASAMRVLRSRLYDYLKAERDAAAAEAAPEKKK-IEWGSQ 331 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 IR+Y + R +TDHR +L + ++ VL G +D I L + A Sbjct: 332 IRSYVLAPYRQVTDHRTDLKVGNVDAVLDGDLDPFIRTYLLSEGA 376 >gi|307265609|ref|ZP_07547163.1| peptide chain release factor 2 [Thermoanaerobacter wiegelii Rt8.B1] gi|306919407|gb|EFN49627.1| peptide chain release factor 2 [Thermoanaerobacter wiegelii Rt8.B1] Length = 330 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 112/330 (33%), Positives = 171/330 (51%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ K L ++ A+ ++ + + K ++ L + + +S ++ Sbjct: 1 MSDPAFWSDIKKSQELAKKQKALKELLEEYNSLVSKWEDLNTLIELGLEEGDESITDEVD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +K + L D + IL I AG+GG+EA + L RMY R+ Sbjct: 61 KEYKELKKKLED-----LKIKTLLNGPYDKNNAILSIHAGSGGTEAQDWAEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++VE + ++ G K + I G + +K E+GVHR+ R+ +A+GR HT Sbjct: 116 ANDKGFEVETIDYLQGEEAGIKSVTLMIKGPFAYGYLKSEAGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V VLPE +I+V+I ED++IDT RASG+GGQ+VN T+SAVRITH+PTGI+V Sbjct: 176 SFALVEVLPELENDIEVEIRPEDLKIDTYRASGAGGQYVNKTESAVRITHLPTGIVVSCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AMK+L+A+L D+ K + K + +IR+Y F + Sbjct: 236 SERSQIQNRETAMKMLKAKLLDLMMKEKKEKIEDL-KGEHREAAWGNQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + V+ G ID IN L Sbjct: 295 KDHRTNYEEGNVNAVMDGEIDGFINAYLKQ 324 >gi|319939454|ref|ZP_08013814.1| peptide chain release factor 2 [Streptococcus anginosus 1_2_62CV] gi|319811440|gb|EFW07735.1| peptide chain release factor 2 [Streptococcus anginosus 1_2_62CV] Length = 325 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 175/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + ++ + + Q + ++ D ++ + + Sbjct: 1 MTEPDFWDDNVAAQKTSQELNELKQTYDNFQQMTDLFDESEILLDFLAEDDSFQEELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +E + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELETRMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 HGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I++++ EDI++DT R+ G+GGQ+VN + VR+THIPTGI+ S+ ++ Sbjct: 177 SVEVMPELDDTIEIEVRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKLLQAKLYQMEQEKKAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + +++ V+ G +D I+ L Sbjct: 294 DHRTGYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|293977757|ref|YP_003543187.1| bacterial peptide chain release factor 1 [Candidatus Sulcia muelleri DMIN] gi|292667688|gb|ADE35323.1| bacterial peptide chain release factor 1 (bRF-1) [Candidatus Sulcia muelleri DMIN] Length = 352 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 154/342 (45%), Positives = 222/342 (64%), Gaps = 8/342 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K+I LK RF E+ + + + Y+KL++EY I II+ + Y +KK+ +++ Sbjct: 9 KKIEVLKKRFYELSFLIIKPEIIHDNKKYVKLSKEYKIIYKIINYYNSYKEKKKYLKEIE 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++I +SD E+ + A E E+ L +I YL K ++ + ++E+RAGTGG Sbjct: 69 SLIKL-SSDKELLEFAIFEKKKNLLELEFLIKKIEYL--LKKNNNTNNVLMELRAGTGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +FV ++FRMY Y WK E+L+ GYKEI+ I G+ V+ +KFESGVH Sbjct: 126 EACIFVENIFRMYTMYFKELCWKYEILNMQQGTIKGYKEIIIEIQGKNVYGTLKFESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP+TE+ GR+HTSA TVA+LP E +++I L D++ +T RASG+GGQHVN T+S Sbjct: 186 RVQRVPSTESQGRLHTSAITVAILPEEDYNNNINIVLSDLKRETFRASGAGGQHVNKTES 245 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+R+THIPTGI+ E+SQH+N +AMKVLRAR+Y E K + S RK I +GD Sbjct: 246 AIRLTHIPTGIIAECQEERSQHKNYEKAMKVLRARIYQSELKIKNEKLSKERKSLISTGD 305 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 RS +IRTYN+ QGR+TDHRIN ++Y L+ + G I+++I L Sbjct: 306 RSAKIRTYNYPQGRVTDHRINKSIYYLDKFMNGKINEMITAL 347 >gi|288941013|ref|YP_003443253.1| peptide chain release factor 2 [Allochromatium vinosum DSM 180] gi|288896385|gb|ADC62221.1| peptide chain release factor 2 [Allochromatium vinosum DSM 180] Length = 349 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 103/340 (30%), Positives = 169/340 (49%), Gaps = 15/340 (4%) Query: 13 KNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K+R E+ + + + L E A + ++ I + DL + + Sbjct: 15 KDRLTEVLRELEDPTIWNDPGRAQALGRERATLEAVVLTIDELTGALADADDLLALAAEE 74 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + ++ + L + + + + D + ++I+AG+GG+EA + Sbjct: 75 SDEATLESLVADLKSHEARVSE-----LEFRRMFSGEMDACNAFVDIQAGSGGTEAQDWA 129 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+ R +K E++ S + G K G F ++ E GVHR+ R Sbjct: 130 EMLLRMYLRWGERRGFKTELMEVSAGEVAGIKSATVKFEGDYAFGWLRTEIGVHRLVRKS 189 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ R HTS ++V V PE + +++I D+RID RASG+GGQHVN T+SAVRITH Sbjct: 190 PFDSGNRRHTSFSSVFVSPEVDDSVEIEINPADLRIDVYRASGAGGQHVNRTESAVRITH 249 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 PTGI+V +++SQH+N+ +AMK L+++LY++E ++ + A K IG G + Sbjct: 250 NPTGIVVQCQNDRSQHKNKDQAMKQLKSKLYELEMQKRRASQQALEETKSDIGWG---SQ 306 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y Q RI D R + + + VL G +D I L Sbjct: 307 IRSYVLDQSRIKDLRTGVEIANTQGVLDGNLDPFIQASLK 346 >gi|297618035|ref|YP_003703194.1| hypothetical protein Slip_1875 [Syntrophothermus lipocalidus DSM 12680] gi|297145872|gb|ADI02629.1| hypothetical protein Slip_1875 [Syntrophothermus lipocalidus DSM 12680] Length = 371 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 111/340 (32%), Positives = 184/340 (54%), Gaps = 6/340 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK+R ++E + + D + + +S + ++ Y+ +E +D+ ++ Sbjct: 25 DVEGLKHRIKKLEDKTCQPGFWDDNQEAQKVVKEMSGLKERVDSYESLVREIEDISALLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + + R E ++ K DD + I+ + AG GG++A Sbjct: 85 LAEAEEDEELYREAAAELARLNRRFRE--YELSIMFKGEHDDSNAIVSLHAGAGGTDAQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L RMY R+A ++V+++ ++ G K + I G+ + +M+ E+GVHR+ R Sbjct: 143 WVEMLLRMYTRWAEDNGYEVDIMDYLPGEEAGIKSVTLLIKGKYAYGKMRAEAGVHRLIR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +ASGR HTS A V+VLPE + +V I +D+RIDT RA G+GGQHVN TDSAVRI Sbjct: 203 VSPFDASGRRHTSFALVSVLPEIQDDVEVTISSDDLRIDTFRAGGAGGQHVNKTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+P+GI+V +E+SQ+ N+L AMK+LRA+LY+++++ K + + Sbjct: 263 THLPSGIVVQCQNERSQYANKLAAMKILRAKLYELKQREQEESLQKL-KGEYKEIAWGNQ 321 Query: 306 IRTYNFSQ-GRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IRTY + + DHR L + + VL G I+D I L Sbjct: 322 IRTYVLNPFSLVKDHRTGLEVGNVNAVLDGDINDFITAYL 361 >gi|46201582|ref|ZP_00208157.1| COG1186: Protein chain release factor B [Magnetospirillum magnetotacticum MS-1] Length = 371 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 160/341 (46%), Gaps = 16/341 (4%) Query: 15 RFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R E+ + K+ E + I +++ + +L + Sbjct: 31 RLDELNASAENPDLWNDAGAAQKIMRERNDLDSAIQGCRALERELADLIELIELGEMEGD 90 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + I D + E+ + L D C +EI AG GG+E+ + Sbjct: 91 QTVIDDAEEQIRAVKERAAKM-----ELETLLSGEADHNDCYMEINAGAGGTESQDWAEM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A +KVE L S + G K I G + +K ESGVHR+ R+ Sbjct: 146 LLRMYTRWAEKHGYKVEWLEESSGEQAGIKSATIRILGHNAYGWLKTESGVHRLVRISPY 205 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++ V P ID+ I + RIDT RASG+GGQH+N TDSAVRITHIP Sbjct: 206 DSAARRHTSFSSAWVYPVIDDSIDIQINESECRIDTYRASGAGGQHINKTDSAVRITHIP 265 Query: 251 TGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIR 307 TGI + E+SQHQNR RA +LRARLY+ E ++ ++K IG G +IR Sbjct: 266 TGIAVACQMERSQHQNRARAWDMLRARLYEAELQKREAAAQALEDQKTDIGWG---HQIR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y + + D R N+ + VL G +D + L A Sbjct: 323 SYVLQPYQMVKDLRTNVETSDTQGVLDGDLDMFMAASLAAR 363 >gi|323140697|ref|ZP_08075618.1| peptide chain release factor 2 [Phascolarctobacterium sp. YIT 12067] gi|322414821|gb|EFY05619.1| peptide chain release factor 2 [Phascolarctobacterium sp. YIT 12067] Length = 329 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 97/334 (29%), Positives = 165/334 (49%), Gaps = 12/334 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D K + + + + + L + + N +S + ++ Sbjct: 1 MGDPTFWDDPEKAQKTAQDVNSLKEEVDGFHKLSAGVDDLEALQEMAAEENDESLLPEMD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ + E+ LE + D + IL + AG GG+EA + L RM+ R+ Sbjct: 61 EL-LAKCRSELEHLELGML----LSGEYDANNAILTLHAGAGGTEAQDWTSMLLRMFTRF 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +E+L D+ G K ++G + ++ E GVHR+ R+ +A+ R HT Sbjct: 116 AEQNGFALEMLDYQPGDEAGVKSATIQVNGHNAYGFLRSEKGVHRLVRISPFDANARRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V V+PE +DV+I ++++R+D R+SG+GGQHVN T SAVR+TH PTGI+V Sbjct: 176 SFAAVDVMPELDDTVDVNINMDEVRVDVYRSSGAGGQHVNKTSSAVRMTHEPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QNR R +++LRA+LY+ E+ + S + + +IR+Y F + Sbjct: 236 NERSQIQNRERCLQMLRAKLYEYEKAKQDALVSDIA-GDYQNIEWGSQIRSYVFQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR ++ V+ G + + L + Q K Sbjct: 295 KDHRTGCETGNIQAVMDGDLMPFVEAYLRSQQKK 328 >gi|284040585|ref|YP_003390515.1| hypothetical protein Slin_5751 [Spirosoma linguale DSM 74] gi|283819878|gb|ADB41716.1| hypothetical protein Slin_5751 [Spirosoma linguale DSM 74] Length = 358 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 167/343 (48%), Gaps = 11/343 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + K + AE+E + + + + + + Y++ + DL T+ + Sbjct: 23 DNKKEQLAELEQQTFQPEFWTDAARAEGVMKQVRGLKGWTTGYEKLNSQFGDLETLFEFY 82 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + E + + ELE + + +D S +LEI AG GG+E+ + Sbjct: 83 EAGDVTEEEVDEEGRKVTTTLEELEL----KKMLGNEEDQLSAVLEINAGAGGTESQDWA 138 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+A + ++ + + D G K + G + +K E+GVHR+ R+ Sbjct: 139 DMLYRMYMRWAEKHGYGLKQVDYQEGDTAGIKSATIEVDGPLAYGFLKSENGVHRLVRIS 198 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V P I++++ DI DT R+ G+GGQ+VN ++AVR+ H Sbjct: 199 PFDSNARRHTSFASVYAYPLIDDTINIEVNPADIDWDTFRSGGAGGQNVNKVETAVRLKH 258 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 P+G+++ E+SQ QN+ A+++L+++LY++E ++ R+ K +I G + Sbjct: 259 KPSGLIIECQQERSQLQNKEVAIRLLKSKLYEIEVQKRNAARAEVEASKQKIEWG---SQ 315 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y R+ DHR E VL G +D I L + Sbjct: 316 IRSYVLDDRRVKDHRTGYQTSNTEAVLDGDLDPFIKAFLLEQE 358 >gi|317153200|ref|YP_004121248.1| peptide chain release factor 2 [Desulfovibrio aespoeensis Aspo-2] gi|316943451|gb|ADU62502.1| peptide chain release factor 2 [Desulfovibrio aespoeensis Aspo-2] Length = 391 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 107/336 (31%), Positives = 167/336 (49%), Gaps = 16/336 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R IE ++S+ + D LT E +S ++ Q K + + + Sbjct: 50 KTRLEAIEHQLSKPGAWDKPGALTPLLREKTQLSDKLAMYESLAQAKDDLDAWLELAHES 109 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + A + +E + D + ILEI G GG E+ + Sbjct: 110 RDEE-----AMAGLDGQISVFKERLGITELATMFAFEHDKGNAILEIHPGAGGVESQDWA 164 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +K+ L ++ G K + I G + +K ESGVHR+ R+ Sbjct: 165 EMLLRMYTRFAERKGFKITQLDYQVGEEAGIKSVTLQIEGLYSYGLLKGESGVHRLIRIS 224 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++SGR HTS A+V V P+ + ++++ ED+RID R+SG GGQ VN T SAVRITH Sbjct: 225 PFDSSGRRHTSFASVDVYPDMDDDIEIEVRDEDLRIDVFRSSGPGGQSVNKTSSAVRITH 284 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSER 305 +PTGI+ +EKSQH+N+ A+++++ARLY+ E +++ R + K I G + Sbjct: 285 LPTGIVAQCQNEKSQHRNKATALRLVKARLYERELQKIEESRRQDYQAKGAIAWG---SQ 341 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDII 340 IRTY R + DHR N ++ L G +D +I Sbjct: 342 IRTYTLQPYRLVKDHRSNSETGNVDAFLDGDLDAMI 377 >gi|217077931|ref|YP_002335649.1| peptide chain release factor 2 [Thermosipho africanus TCF52B] gi|226739131|sp|B7IE81|RF2_THEAB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|217037786|gb|ACJ76308.1| peptide chain release factor 2 [Thermosipho africanus TCF52B] Length = 369 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 112/340 (32%), Positives = 176/340 (51%), Gaps = 8/340 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + + E+E +M +S K E I I + + +DL I Sbjct: 27 ENKRKELEELEKQMGDSDFWSDQRKAREISQKAQRIRKIIDDMKDIEAKFEDLDAAIELS 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D + + V IEK+++ E L+ D + L I G GG+E+ + Sbjct: 87 DEDQSFVETIKEMVEEIEKKVKTFEL----ELILNGKFDASNAYLTIHPGAGGTESQDWA 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + V+++ ++ G K + I G + +K+E GVHR+ R+ Sbjct: 143 SMLLRMYMRWAERKGFDVQIVDYQPGEEAGIKSAMIYIKGDYAYGYLKYERGVHRLVRIS 202 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V V+P +ID++I ED+RIDT RASG+GGQ+VN T+SAVRITH Sbjct: 203 PFDANKRRHTSFASVNVIPEIDDDIDIEINPEDLRIDTYRASGAGGQYVNKTESAVRITH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +E+SQ QN+ A+KVL+ARLY +E ++ + + ++ +IR Sbjct: 263 IPTGIVVTCQTERSQLQNKETALKVLKARLYQLELEKRQKQLEEI-QGELKDISWGNQIR 321 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR N+ ++ V+ G ID I L Sbjct: 322 SYVFQPYTMVKDHRTNVETGNIDAVMDGEIDIFIESELIH 361 >gi|291243180|ref|XP_002741481.1| PREDICTED: CG5705-like [Saccoglossus kowalevskii] Length = 411 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 142/352 (40%), Positives = 213/352 (60%), Gaps = 6/352 (1%) Query: 10 CDLKNRFAEIEL-RMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +KN + +I+ +SES S+ L + PI+ + +++K E ++++ ++ Sbjct: 48 KKIKNEYDDIQKDLLSESASITGSKLKNLHRRKLELLPIVDLLKKWEEKNVELEEINILL 107 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D N + I + ++ + + + L+ + DD ++EI AG GG EA Sbjct: 108 QDSNDNEMISLAKEEKLEMMAAIRELEDEIFSLLVPKDEDDDTSDVLVEISAGVGGQEAM 167 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF ++F MY+RYA ++W+ +VL +D GG + ++SG GV+S MK+E GVHRVQ Sbjct: 168 LFAAEMFEMYQRYAHFQRWQFDVLDVGKSDIGGIRHATVSVSGPGVYSYMKYEGGVHRVQ 227 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE GRVHTS TVAVLP+ EID+ I D++I+T RASG+GGQHVNTTDSAVRI Sbjct: 228 RVPKTEKQGRVHTSTMTVAVLPQPREIDLQIKPSDLKIETKRASGAGGQHVNTTDSAVRI 287 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTGI E+SQ +N+ AMKVL RLY+ + + + + +RKLQ+GS RSE+ Sbjct: 288 VHLPTGIAAECQQERSQIKNKAMAMKVLETRLYNKQLEEQQHIQRQSRKLQVGSSGRSEK 347 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSA 355 IRTYNF+Q RITDHRI L+ ++ L G ++D+I L + + + + Sbjct: 348 IRTYNFNQDRITDHRIGQHLHNIDGFLSGGDDLNDLIESLQEYYSVEAVKTL 399 >gi|254467077|ref|ZP_05080488.1| peptide chain release factor 2 [Rhodobacterales bacterium Y4I] gi|206687985|gb|EDZ48467.1| peptide chain release factor 2 [Rhodobacterales bacterium Y4I] Length = 375 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 119/335 (35%), Positives = 171/335 (51%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I+ Y KQ+ D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDPEAAQKLMRERQALVDSINTYKGIKQDLSDNIELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + R E E+ L D LEI AG GG+E+ + L R Sbjct: 91 AEVVKDAEESLKALKERAAEKELEAL--LDGEADANDTFLEINAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S D+ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P I++++ DIR+DT R+SG+GGQHVNTTDSAVRITHIPTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIEIEVNPSDIRVDTYRSSGAGGQHVNTTDSAVRITHIPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY E R E +A + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQQELDRRHAEINAAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D + L + Sbjct: 328 YQMVKDLRTQYETSDTKGVLDGDLDGFMAATLAMN 362 >gi|225016122|ref|ZP_03705355.1| hypothetical protein CLOSTMETH_00066 [Clostridium methylpentosum DSM 5476] gi|224951119|gb|EEG32328.1| hypothetical protein CLOSTMETH_00066 [Clostridium methylpentosum DSM 5476] Length = 375 Score = 220 bits (559), Expect = 4e-55, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 181/352 (51%), Gaps = 14/352 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A++E ++ D + + + + I+ +++ + +D T++ Sbjct: 31 DVDALVQEVAQLEETAAQPGFWDDLDNSQKVLQKTTRLKNTIAEFEKIESLYEDTQTLVE 90 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D D + + +I+ ++ L D + IL AG GG+EA Sbjct: 91 FAFEEDDESCSDEVKANLKSIQDQVD----AQRLATLLSGEYDANNAILTFHAGAGGTEA 146 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +V LFRMY +A ++ + L + ++ G K I I G + +K E+GVHR+ Sbjct: 147 MDWVEMLFRMYSHWAERHGFQTKTLDFVEGEEAGIKSISILIVGTNAYGFLKSETGVHRL 206 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 RV ++SGR HTS A++ V+PE I+V+I ED+R+DT R+SG+GGQHVN T+SA+ Sbjct: 207 VRVSPFDSSGRRHTSFASLEVIPEVDDSIEVEIRPEDLRVDTYRSSGAGGQHVNKTESAI 266 Query: 245 RITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH+PTGI+ +E+SQ QNR AMK+L+++L +++ + ++ S + Q I G Sbjct: 267 RITHLPTGIVTACQNERSQMQNRAVAMKMLKSKLIEIKEREHLDKISDIKGEQKEIAWG- 325 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 +IR+Y F + DHR + V+ G +D IN L A K + Sbjct: 326 --SQIRSYVFMPYTLVKDHRTGFENGNISAVMDGDLDGFINAYLVAKSQKKL 375 >gi|168333703|ref|ZP_02691956.1| peptide chain release factor 2 [Epulopiscium sp. 'N.t. morphotype B'] Length = 349 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 105/354 (29%), Positives = 166/354 (46%), Gaps = 16/354 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M + + ++ + E+E + + +E IISK + Sbjct: 1 MKWGDLFDVTHVQEQITELETISATPDFWQNSKYAQSVLQEXKDYKEIISKYKKLCNMYE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + L + + + + IE + + L D I+ + Sbjct: 61 DVLVLIDMGIEEHDADMCAEAISDANSFIEFY-----DNLRTSTLLDGEYDKNDAIISLH 115 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG+EA + L RMY R+A +K ++L D ++ G K ISG+ + +K Sbjct: 116 AGAGGTEACDWNNMLLRMYTRWAEKHGFKSKLLDILDGEEAGVKSATLEISGQNAYGYLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 E G+HR+ R+ ++ GR HTS A++ V+P+ + ++ I ED++IDT R+SG+GGQH Sbjct: 176 SEKGIHRLVRISPFDSGGRRHTSFASLDVMPKIDDTAEITINPEDLQIDTYRSSGAGGQH 235 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR-- 293 VNTTDSAVRITH P+GI+V +E+SQ QNR MK+L ++L + + + R Sbjct: 236 VNTTDSAVRITHKPSGIVVQCQNERSQIQNRETCMKMLASKLLYKQHQEQLLKIDEIRGE 295 Query: 294 KLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K I G +IR+Y F + DHR N V+ G ID +N L Sbjct: 296 KKDIAWG---SQIRSYVFHPYNMVKDHRTNQETGNTGAVMDGDIDAFVNAYLAW 346 >gi|260433401|ref|ZP_05787372.1| peptide chain release factor 2 [Silicibacter lacuscaerulensis ITI-1157] gi|260417229|gb|EEX10488.1| peptide chain release factor 2 [Silicibacter lacuscaerulensis ITI-1157] Length = 375 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 171/335 (51%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I Y+ K + +D +I + + Sbjct: 31 RLEEFNARVEDPNLWDNPENAQKLMRERQVLVDAIETYESIKTDLKDNVELIELGEMEGD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + + E E+ L D LEI AG GG+E+ + L R Sbjct: 91 EEVVKDAEEALKKLRDKAAEKELEAL--LDGEADANDTFLEINAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S + ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSETPGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P I++++ DIR+DT R+SG+GGQHVNTTDSAVRITHIPTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIEIEVNPADIRVDTYRSSGAGGQHVNTTDSAVRITHIPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R E +A + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAEINAAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G + + L + Sbjct: 328 YQMVKDLRTGYETSDTKGVLDGDLGGFMAATLAMN 362 >gi|119476451|ref|ZP_01616802.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2143] gi|119450315|gb|EAW31550.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2143] Length = 364 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 169/341 (49%), Gaps = 15/341 (4%) Query: 13 KNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K + E+EL + E D +L ++ AA+ ++S I + +L + + Sbjct: 30 KEQLTEVELELGEPAVWDDPGRAQELGKQRAALDIVVSTIDKLTVGVSDVAELLEMAVEE 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + ++ L + + + + D + LEI++G+GG+EA + Sbjct: 90 DDADTVMEIENELQLLNQHL-----ATLEFRRMFSGEMDANNAFLEIQSGSGGTEAQDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 + RMY R+ + + E++ +SD D G K SG F ++ E+GVHR+ R Sbjct: 145 EMICRMYLRWGESKGFSTELMEASDGDVAGIKSATIRFSGEYAFGWLRTETGVHRLVRKS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ R HTS A+V V PE E D+R DT RASG+GGQHVN TDSAVRITH Sbjct: 205 PFDSGSRRHTSFASVFVSPEIDEDIDIEINPSDLRTDTYRASGAGGQHVNKTDSAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSER 305 P+GI+V S++SQHQNR AMK L+A+LY++E + + + K IG G + Sbjct: 265 EPSGIVVQCQSQRSQHQNRDFAMKQLKAKLYEMEMLKRNEAAQAQEDNKADIGWG---SQ 321 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y RI D R ++ VL G +D I L Sbjct: 322 IRSYVLDDQRIKDLRTHVQTSNCNNVLDGDLDLFIEASLKM 362 >gi|75759027|ref|ZP_00739135.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228903659|ref|ZP_04067779.1| Peptide chain release factor 2 [Bacillus thuringiensis IBL 4222] gi|228911012|ref|ZP_04074820.1| Peptide chain release factor 2 [Bacillus thuringiensis IBL 200] gi|228968278|ref|ZP_04129276.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|74493493|gb|EAO56601.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|228791451|gb|EEM39055.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar sotto str. T04001] gi|228848667|gb|EEM93513.1| Peptide chain release factor 2 [Bacillus thuringiensis IBL 200] gi|228855927|gb|EEN00467.1| Peptide chain release factor 2 [Bacillus thuringiensis IBL 4222] Length = 326 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 166/333 (49%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ D+ + + H ++ + + +L Sbjct: 1 MMSAGFWDDQQGAQAVINEANALKDMVGSFRQLDETFENLEVTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|195977853|ref|YP_002123097.1| peptide chain release factor 2 [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225870173|ref|YP_002746120.1| peptide chain release factor 2 [Streptococcus equi subsp. equi 4047] gi|195974558|gb|ACG62084.1| peptide chain release factor 2 PrfB [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|225699577|emb|CAW93198.1| peptide chain release factor 2 [Streptococcus equi subsp. equi 4047] Length = 338 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 188/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + + + ++ + + ++ + + + Sbjct: 1 MEEDIALLENKMTEPDFWNDNMAAQKTSQELNELKLTYQTFHDMQELSDETELYLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + + + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSVKEELEASLIKLSQMLASYE----MTLLLSEPYDHSNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY R+ + +KVE L D+ G K + +I G + +K E GVHR+ R+ Sbjct: 117 LFRMYTRFGNAKGFKVETLDYQAGDEAGIKSVTLSIEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFVSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTNFEVAQVDKVMDGDIEGFIDAYLKWRMGE 337 >gi|300022372|ref|YP_003754983.1| hypothetical protein Hden_0845 [Hyphomicrobium denitrificans ATCC 51888] gi|299524193|gb|ADJ22662.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC 51888] Length = 377 Score = 219 bits (558), Expect = 4e-55, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 169/350 (48%), Gaps = 14/350 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++R A + + + + + + + + +++ D T+I ++ Sbjct: 29 EDRLASLNAKAEDPNLWSDAKNAQKVMRQRQTLERSVEDFKRLQRDYDDALTLIELGEAE 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 S+ +++ E ++ + + D S +E+ AG GG+E+ + L Sbjct: 89 SDEASVSEGEAALKRVDLEAHRRSVE--AMLSGEADGMSTYVEVHAGAGGTESQDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+ R +KV+++ S ++ G K I G F +K E+GVHR+ R+ + Sbjct: 147 ARMYARWGERRGYKVKLIDESPGEEAGIKSATFEIDGDNAFGWLKTEAGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ R HTS A+V V P I+VDI D+ I R+SG+GGQHVN T+SAVR+ H P+ Sbjct: 207 SNARRHTSFASVTVYPVIDDTIEVDINPADVDISFARSSGAGGQHVNRTESAVRLVHKPS 266 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRT 308 GI++ ++SQHQN+ A + L+ARLY++E K+ + +A + K IG G +IR+ Sbjct: 267 GIVIFAQEQRSQHQNKDIAFRRLKARLYEMELKKREAKANAEQAAKTDIGWG---HQIRS 323 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 Y + + D R VL G ID I L+ + E Sbjct: 324 YVLQPYQLVKDLRTGAQSTNPSEVLDGDIDPFIEAALSQ----RLKGGGE 369 >gi|20807024|ref|NP_622195.1| protein chain release factor B [Thermoanaerobacter tengcongensis MB4] gi|20515510|gb|AAM23799.1| Protein chain release factor B [Thermoanaerobacter tengcongensis MB4] Length = 347 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 121/347 (34%), Positives = 180/347 (51%), Gaps = 10/347 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +K +IE +MS+ K E + + Y+ +DL+T+I Sbjct: 5 DVEGIKKEIEDIEKQMSDPSFWSDLKKSQELSKKQKALKELLEEYESLLSRCEDLYTLIE 64 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D I + + E ++KE+ L L D + IL I AG+GG+EA Sbjct: 65 LGLEEGDESIAEEVEREYKELKKEVENL----KIRTLLSGPYDKNNAILSIHAGSGGTEA 120 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + ++VE+L + ++ G K I G + +K E+GVHR+ Sbjct: 121 QDWAEMLLRMYTRWANDKGFEVEILDYLEGEEAGIKSATLLIKGPFAYGYLKGEAGVHRL 180 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+GR HTS A V V+PE +I+++I ED++IDT RASG+GGQHVN T+SAV Sbjct: 181 VRISPFDAAGRRHTSFALVEVIPELEDDIEIEIRPEDLKIDTFRASGAGGQHVNKTESAV 240 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V +E+SQ QNR AMK+L+A+L D+ K + K + Sbjct: 241 RITHLPTGIVVSCQNERSQIQNRETAMKMLKAKLLDLMMKERKEKIEDL-KGEHREAAWG 299 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y F + DHR N + V+ G ID IN L A Sbjct: 300 NQIRSYVFQPYTLVKDHRTNYEEGNVNAVMDGEIDGFINAYLKQKSA 346 >gi|331003438|ref|ZP_08326937.1| peptide chain release factor 2 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412484|gb|EGG91873.1| peptide chain release factor 2 [Lachnospiraceae oral taxon 107 str. F0167] Length = 337 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 12/331 (3%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D K+ E + + K + + ++ L + + N +S I ++ Sbjct: 1 MEEPTFWDDPKESTKIVREAKQLKDTVEKYNKLKSEYEDIGVLIEMGYEENDESLIPEIE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ + L DD S I+++ AG GG+E+ + L+RMY R+ Sbjct: 61 AMLEEFTKEIDA-----LKIATLLTGEYDDASAIMKLNAGAGGTESCDWCSMLYRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 AA + V+VL D D+ G K + I+G + ++ E GVHR+ R+ A+G+ T Sbjct: 116 AAKEGYTVDVLDILDGDEAGIKSVTLQINGLNAYGYLRSEHGVHRLVRISPFNAAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + ++P+ E DVDI +D+RIDT R+SG+GGQH+N T SA+RITHIPTG++V Sbjct: 176 SFVSCDIMPDIEEDLDVDINPDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGVVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ +AM++L+A+L+ ++++ + S R + +IR+Y + Sbjct: 236 NERSQFQNKDKAMQMLKAKLFMLKQQANVEKLSDIR-GDVKDIGWGNQIRSYVMQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + V+ G ID I LT Sbjct: 295 KDHRTGAESGNVSAVMDGDIDKFIIAYLTWQ 325 >gi|7573420|emb|CAB87736.1| translation releasing factor RF-1-like protein [Arabidopsis thaliana] Length = 419 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 120/354 (33%), Positives = 208/354 (58%), Gaps = 8/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ ++ + E+ +++++ V Y KL + + + +++ + +++ + Sbjct: 60 KMESVEKTWKELSVKLADPDVVSNQSEYQKLAQSMSELDEVVTVFRRFKDCEKQLLESKV 119 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D ++ ++ E+ ++ KEI ELE ++ LLLP D D ++ +LE+RAGTGG E Sbjct: 120 LAKEAGDDEDMAEMIGSEINSLTKEIEELEKQLKVLLLPSDPLDARNILLEVRAGTGGDE 179 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA++ GDL + + GYK V I G V+S++K+ESGVHR Sbjct: 180 AAIWTGDLVGADVSEVQR---AQLLEVFNGFMLRGYKTCVMEIKGNRVYSKLKYESGVHR 236 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVP TE GRVHTS ATVA++PEA E++V I +DI + + R+ G+GGQ+VN ++A+ Sbjct: 237 VQRVPQTETQGRVHTSTATVAIMPEADEVEVVIDPKDIELTSARSGGAGGQNVNKVETAI 296 Query: 245 RITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + H P+GI + + E++Q +N+ RA ++LRA+LY+++ + + RK Q+G+G RS Sbjct: 297 DLFHKPSGIRIFCTEERTQIRNKARAFQLLRAKLYEIKVREQQEKIRNERKSQVGTGARS 356 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 E+IRTYN+ R+TDHR+ + + L L G ++D + Q +++ SE Sbjct: 357 EKIRTYNYKDSRVTDHRLKMN-FALTTFLDGALEDAVQACAALEQKELMEELSE 409 >gi|215764957|dbj|BAG86654.1| unnamed protein product [Oryza sativa Japonica Group] Length = 314 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 159/313 (50%), Positives = 224/313 (71%), Gaps = 2/313 (0%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I K++E + L +++ + + + R++A E+L +E ++L++++ LLPKD Sbjct: 1 MDMIEELRSKQEEIEGLKSLMTNSVEEKDFREMAAQELLQALEEEKQLQHKLFRSLLPKD 60 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D++ CILE+RAGTGG EA+LF D+F+MYE+Y+ WK + + ++ GYKE Sbjct: 61 EADERDCILEVRAGTGGEEASLFAMDIFKMYEKYSQKNGWKFDAIDIMESALKGYKEASG 120 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 TISG G + ++KFESG+HRVQRVP TE SGRVHTSA +VA+LP+A E+DV + ED+RID Sbjct: 121 TISGPGAYGKLKFESGIHRVQRVPVTEKSGRVHTSAVSVAILPQADEVDVQLRNEDLRID 180 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ GSGGQ VNTTDSAVRITH+PTG +V E+SQHQN+ +A+KVLRARLY++ER R Sbjct: 181 TYRSGGSGGQSVNTTDSAVRITHVPTGTVVAIQDERSQHQNKAKALKVLRARLYEIERHR 240 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPL 343 + +RS R QIGSGDRSERIRTYNF QGR+TDHR+ +T + +E V++G +D I+ L Sbjct: 241 LHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGITHHSIEDVMEGESLDIFIDAL 300 Query: 344 LTAHQAKMIGSAS 356 L ++ I S + Sbjct: 301 LLRYEMDAIASFA 313 >gi|255323776|ref|ZP_05364902.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum SK141] gi|255298956|gb|EET78247.1| peptide chain release factor 2 [Corynebacterium tuberculostearicum SK141] Length = 367 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 158/345 (45%), Gaps = 10/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L R E+E + + D + + +S +K+ + + +D+ + Sbjct: 26 EALAARIRELEAQAGDPSLWDDPAHAQKVTSELSAAQAKVRKLESLRGRLEDMPVMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + + + D + ++ IR+G GG +AA + Sbjct: 86 EEEGDT-----SLADDELDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWA 140 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV+V S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 141 EMLMRMYTRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRIS 200 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 201 PFDNQGRRQTSFAEVEVLPVVEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTH 260 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 261 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEEQAELDAL--GAGGNASWGNQMR 318 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + + D R N + VL G ID + + + Sbjct: 319 SYVLHPYQMVKDLRTNFEVGDPSKVLDGDIDGFLESGIRWRMQQQ 363 >gi|169826759|ref|YP_001696917.1| peptide chain release factor 2 [Lysinibacillus sphaericus C3-41] gi|168991247|gb|ACA38787.1| Peptide chain release factor 2 (RF-2) [Lysinibacillus sphaericus C3-41] Length = 328 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 168/332 (50%), Gaps = 16/332 (4%) Query: 22 RMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M E D + I+++ ++ + ++ E + Sbjct: 1 MMLEPGFWDDQQGAQVIINEGNGLKAIVNEYKELEETHENLDMTLELLR-----EEPDEE 55 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q E+ E ++ + LL D + ILE+ G GG+E+ + L RMY R Sbjct: 56 LQEELGKELVEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A R +KVE + D+ G K + +I G F ++ E GVHR+ R+ ++SGR H Sbjct: 116 WAEKRGFKVETMDYLPGDEAGIKSVTISIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS + V+PE E ++DI ED++IDT RA+G+GGQH+NTTDSAVRITHIPTG +V Sbjct: 176 TSFVSCDVMPEFDENIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTVVQC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR +AM +L+ +LY +E ++ + R Q IG G +IR+Y F Sbjct: 236 QAERSQIKNREKAMAMLKGKLYQLELEKQQAQLDEIRGEQKDIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + V+ G +D IN L Sbjct: 293 SMVKDHRTNEETGNVGAVMDGDLDPFINAYLR 324 >gi|160914511|ref|ZP_02076726.1| hypothetical protein EUBDOL_00517 [Eubacterium dolichum DSM 3991] gi|158433669|gb|EDP11958.1| hypothetical protein EUBDOL_00517 [Eubacterium dolichum DSM 3991] Length = 346 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 177/348 (50%), Gaps = 12/348 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQ 60 +S + + K++ E+ R E ++ + ++ D + Sbjct: 1 MSRFDLAEKKHKIEELTARTMEESFWSDPQHAQTLIQQLNGLKDVVESYEQLDHALAGME 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + T++ D + D+EI +L ++E +E+ + E +L D + ILE+ G Sbjct: 61 ETLTLLKD-DFDTEIFELLEMEYHEMEERFEQFEL----KMLLSHEYDHSNAILELHPGA 115 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ + L+RMY R+A + +KV VL D+ G K I + G + +K E Sbjct: 116 GGTESCDWADMLYRMYSRWAEKKGYKVSVLDYLAGDEAGIKSITFLVEGDMAYGYLKAEK 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ ++ GR HTS A++ V+P+ + +++I ED+ ++T RASG+GGQH+N Sbjct: 176 GVHRLVRISPFDSGGRRHTSFASLDVMPQFNDEIEIEIRPEDLIVETKRASGAGGQHINK 235 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSA+R+ H PTG++ + +SQH+NR A+++L++R+Y + + + + Q Sbjct: 236 TDSAIRMVHKPTGLVATCQNGRSQHENREEALRILKSRIYQKMIEEQEAKIAEIKGEQKA 295 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + +IR+Y F + DHR + V+ G +D I L Sbjct: 296 N-EWGSQIRSYVFHPYSMVKDHRTGYETSDTQSVMDGNLDAFIFAYLK 342 >gi|171780065|ref|ZP_02920969.1| hypothetical protein STRINF_01853 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171281413|gb|EDT46848.1| hypothetical protein STRINF_01853 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 336 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 103/341 (30%), Positives = 185/341 (54%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + I + ++ + +++ ++ + + + Sbjct: 1 MEEDIALLENKMTEPDFWNDNIAAQKTSQELNGLKQTYETFNEMQELSDETELYLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D I+ + +++ ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDSIQAELE----ETLEKLDKIMTSYEMTLLLSEPYDRNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY RY + +KVE L D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LFRMYTRYGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++V V+PE ++V+I +DI++DT R+ G+GGQ+VN + +R+THIP Sbjct: 177 DSAKRRHTSFSSVEVMPELDDTVEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGIRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F+ + DHR + +++ V+ G ID I+ L Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIDGFIDAFLKWR 334 >gi|259506494|ref|ZP_05749396.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314] gi|259165914|gb|EEW50468.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314] Length = 387 Score = 219 bits (558), Expect = 5e-55, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 174/353 (49%), Gaps = 12/353 (3%) Query: 5 SHKQI---CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++I +L +R E+E + ++ D + + +S + +++ + +Q D Sbjct: 38 TIEKILNPEELSDRVRELEAQAADPGLWDNPDHAQQVTSELSHVQAELRKVTELRQRLDD 97 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + + + L E+ + + LE + D + ++ IR+G G Sbjct: 98 LPIMYELAEEEGDDTSLVDEELADLRTGVEALEV----KTMLSGEYDAREAVINIRSGAG 153 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G +AA + L RMY R+A KV+V S ++ G K + G ++ ++ E G Sbjct: 154 GVDAADWAEMLMRMYIRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGDYMYGQLSVEQG 213 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HR+ R+ + GR TS A V VLP + +DIP ++R+D R+SG GGQ VNTT Sbjct: 214 AHRLVRISPFDNQGRRQTSFAEVEVLPVVEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTT 273 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ Sbjct: 274 DSAVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLQAKLLEKKRQEERAEMDAL--GAGGN 331 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R N + VL G ID ++ + A+ Sbjct: 332 ASWGNQMRSYVLHPYQMVKDLRTNYEVNDPSKVLDGDIDGLLEAGIRWRMAQQ 384 >gi|49478907|ref|YP_039176.1| peptide chain release factor 2 [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140380|ref|YP_086452.1| peptide chain release factor 2 [Bacillus cereus E33L] gi|118480225|ref|YP_897376.1| peptide chain release factor 2 [Bacillus thuringiensis str. Al Hakam] gi|228923910|ref|ZP_04087187.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228930187|ref|ZP_04093196.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228948905|ref|ZP_04111178.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955423|ref|ZP_04117428.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961413|ref|ZP_04123027.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|229050846|ref|ZP_04194398.1| Peptide chain release factor 2 [Bacillus cereus AH676] gi|229072632|ref|ZP_04205834.1| Peptide chain release factor 2 [Bacillus cereus F65185] gi|229082391|ref|ZP_04214854.1| Peptide chain release factor 2 [Bacillus cereus Rock4-2] gi|229094280|ref|ZP_04225356.1| Peptide chain release factor 2 [Bacillus cereus Rock3-42] gi|229112593|ref|ZP_04242130.1| Peptide chain release factor 2 [Bacillus cereus Rock1-15] gi|229124692|ref|ZP_04253873.1| Peptide chain release factor 2 [Bacillus cereus 95/8201] gi|229130431|ref|ZP_04259388.1| Peptide chain release factor 2 [Bacillus cereus BDRD-Cer4] gi|229147710|ref|ZP_04276053.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST24] gi|229153340|ref|ZP_04281518.1| Peptide chain release factor 2 [Bacillus cereus m1550] gi|229181440|ref|ZP_04308768.1| Peptide chain release factor 2 [Bacillus cereus 172560W] gi|229187396|ref|ZP_04314539.1| Peptide chain release factor 2 [Bacillus cereus BGSC 6E1] gi|229193426|ref|ZP_04320374.1| Peptide chain release factor 2 [Bacillus cereus ATCC 10876] gi|229199302|ref|ZP_04325969.1| Peptide chain release factor 2 [Bacillus cereus m1293] gi|296505600|ref|YP_003667300.1| peptide chain release factor 2 [Bacillus thuringiensis BMB171] gi|301056649|ref|YP_003794860.1| peptide chain release factor 2 [Bacillus anthracis CI] gi|49330463|gb|AAT61109.1| peptide chain release factor [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973849|gb|AAU15399.1| peptide chain release factor 2 (RF-2) [Bacillus cereus E33L] gi|118419450|gb|ABK87869.1| bacterial peptide chain release factor 2 (bRF-2) [Bacillus thuringiensis str. Al Hakam] gi|228584162|gb|EEK42313.1| Peptide chain release factor 2 [Bacillus cereus m1293] gi|228590081|gb|EEK47952.1| Peptide chain release factor 2 [Bacillus cereus ATCC 10876] gi|228596100|gb|EEK53777.1| Peptide chain release factor 2 [Bacillus cereus BGSC 6E1] gi|228602015|gb|EEK59508.1| Peptide chain release factor 2 [Bacillus cereus 172560W] gi|228629944|gb|EEK86595.1| Peptide chain release factor 2 [Bacillus cereus m1550] gi|228635723|gb|EEK92210.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST24] gi|228653026|gb|EEL08907.1| Peptide chain release factor 2 [Bacillus cereus BDRD-Cer4] gi|228658787|gb|EEL14446.1| Peptide chain release factor 2 [Bacillus cereus 95/8201] gi|228670973|gb|EEL26280.1| Peptide chain release factor 2 [Bacillus cereus Rock1-15] gi|228689133|gb|EEL42956.1| Peptide chain release factor 2 [Bacillus cereus Rock3-42] gi|228700823|gb|EEL53346.1| Peptide chain release factor 2 [Bacillus cereus Rock4-2] gi|228710608|gb|EEL62581.1| Peptide chain release factor 2 [Bacillus cereus F65185] gi|228722502|gb|EEL73895.1| Peptide chain release factor 2 [Bacillus cereus AH676] gi|228798298|gb|EEM45297.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228804215|gb|EEM50829.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810661|gb|EEM57009.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228829472|gb|EEM75100.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228835709|gb|EEM81073.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|296326652|gb|ADH09580.1| peptide chain release factor 2 [Bacillus thuringiensis BMB171] gi|300378818|gb|ADK07722.1| peptide chain release factor 2 [Bacillus cereus biovar anthracis str. CI] Length = 326 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|238759279|ref|ZP_04620445.1| Peptide chain release factor 2 [Yersinia aldovae ATCC 35236] gi|238702440|gb|EEP94991.1| Peptide chain release factor 2 [Yersinia aldovae ATCC 35236] Length = 310 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 170/316 (53%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +A+ I+S I DQ ++ L + + + + + A + Sbjct: 1 MGKERSALEEIVSTIDQLDQGMEDVSGLLELAIEADDEETFNEAV-----AELDTLDGKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D +C L+++AG+GG+EA + L RMY R+A R +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +I Sbjct: 116 GDVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITH+PT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY+ E ++ ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYEFEMQKKNADKQVLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|149183327|ref|ZP_01861766.1| peptide chain release factor 2 [Bacillus sp. SG-1] gi|148848954|gb|EDL63165.1| peptide chain release factor 2 [Bacillus sp. SG-1] Length = 327 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + ++++ + ++ + ++ + N +L Sbjct: 1 MLQPDFWNDQQQAQGVINEANGLKELVNEYKDMQEMQENLEVTLELVKEENDAELQEELV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ LL + D + ILE+ G GG+E+ + L RMY+R+ Sbjct: 61 EETKDLNKRLNE-----YELQLLLSEPHDKNNAILELHPGAGGTESQDWGSMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKKGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE E ++DI ED++IDT RASG+GGQH+NTTDSAVRITH PTG++V Sbjct: 176 SFVSCEVMPEFNEEIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHQPTGVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR +AMK+L+A+LY + E + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREQAMKMLKAKLYQKRIEEQEQELAEIRGEQKDIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G I+ IN L + Sbjct: 293 MVKDHRTNTEMGNVQAVMDGDINGFINAYLRSR 325 >gi|301165910|emb|CBW25483.1| peptide chain release factor 2 [Bacteriovorax marinus SJ] Length = 358 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 108/359 (30%), Positives = 178/359 (49%), Gaps = 16/359 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 H ++ R +EI + D K+ +E + +S ++ + + E + L Sbjct: 7 HFEVERKSARLSEISDMEAMEGFWDDSDNAAKVQKEKSVLSDVVETYTTLKELFDEFEVL 66 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + +++ +L D + I+ I AG GG Sbjct: 67 VEFANGEEDEDSALEAIDCYDKFLKQFNA-----AELKVLLSGEVDPNNAIVSINAGAGG 121 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + LFRM R+A + +KV+VL D D G K TISG + +K E GV Sbjct: 122 TESCDWASMLFRMINRWAESKAFKVQVLDVQDGDSAGIKSATMTISGNYAYGYLKSEIGV 181 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++ R HTS +++ V PE + +++I +D++ID R+ G+GGQ VNTTD Sbjct: 182 HRLVRISPFDSNARRHTSFSSIFVSPEIDDNIEIEILDKDLKIDVYRSGGAGGQSVNTTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIG 298 SAVRITHIPT +V +E+SQ QN+L+AMKVLR+RLY++E ++ + + K +IG Sbjct: 242 SAVRITHIPTNTVVTCQNERSQLQNKLQAMKVLRSRLYELEMEKRRAQEAETEASKQEIG 301 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 G +IR+Y + + D R + E VL G +D ++ L + I + Sbjct: 302 WGA---QIRSYVLHPYKLVKDTRTSFESGNAEKVLDGDLDGFMDAFLRWSVSSKIEEEN 357 >gi|28896314|ref|NP_802664.1| peptide chain release factor 2 [Streptococcus pyogenes SSI-1] gi|28811565|dbj|BAC64497.1| putative peptide chain release factor 2 [Streptococcus pyogenes SSI-1] Length = 337 Score = 219 bits (557), Expect = 5e-55, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E M+E + I + ++ + K + ++ + ++ + Sbjct: 1 MEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDFLKEELEENLMQ----LDKITGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDL 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 294 SYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 337 >gi|237786018|ref|YP_002906723.1| peptide chain release factor 2 [Corynebacterium kroppenstedtii DSM 44385] gi|237758930|gb|ACR18180.1| peptide chain release factor RF-2 [Corynebacterium kroppenstedtii DSM 44385] Length = 379 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 171/352 (48%), Gaps = 10/352 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + DLK++ E+E + S+ D + + +S + ++I +Q D+ + Sbjct: 24 DVDDLKDQVRELEAQASDPSLWDDPDHAQQVTSKLSHVQAQIKKVTTLRQRVDDMPVMYE 83 Query: 68 DHNS-----DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D++ D A+ + + +R + + D++ ++ IR+ GG Sbjct: 84 LADDATEAGDTDAADEAREMADSERETLRHEIESLEVQTMLSGEYDEREAVVNIRSAAGG 143 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +AA + L RMY R+ K++V S ++ G K + G ++ ++ E G Sbjct: 144 VDAADWAEMLMRMYTRWTEQHGHKIDVFDISYAEEAGIKSATFIVHGDYMYGQLSVEQGT 203 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ + GR TS A V VLP +DI D+R+D R+SG GGQ VNTTD Sbjct: 204 HRLVRISPFDNQGRRQTSFAEVEVLPVVEKTDHIDIDENDVRVDVYRSSGPGGQSVNTTD 263 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V +EKSQ QN+ AM+VL A+L D +R+ E +A + GS Sbjct: 264 SAVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLAAKLLDRKREEEQAEMNALKGD--GSN 321 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R N + VL G +D + + A+ Sbjct: 322 SWGNQMRSYVLHPYQMVKDLRTNYEVNDPSKVLDGDLDGFLEAGIRWRMAQQ 373 >gi|229087663|ref|ZP_04219789.1| Peptide chain release factor 2 [Bacillus cereus Rock3-44] gi|228695624|gb|EEL48483.1| Peptide chain release factor 2 [Bacillus cereus Rock3-44] Length = 327 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQTVINEANALKDMVGKFRQLDETFENLEVTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKSLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|323703031|ref|ZP_08114687.1| peptide chain release factor 2 [Desulfotomaculum nigrificans DSM 574] gi|323532044|gb|EGB21927.1| peptide chain release factor 2 [Desulfotomaculum nigrificans DSM 574] Length = 326 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 169/332 (50%), Gaps = 12/332 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ D ++T++ A + + + + Q+ + + + + +L Sbjct: 1 MTQEGFWDNTEHSQQVTQKLALLKDKVEAFNSLESAYQDLEVMLELCNEEEDPLLDDELK 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ ++ D IL + AG GG+E+ +V L RM+ RY Sbjct: 61 SDLASLTKRVADM-----ELEVMLSGPYDRNDAILSLHAGAGGTESQDWVQMLLRMFTRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVEVL D+ G K +SG + +K E GVHR+ R+ +A+GR HT Sbjct: 116 CENHNYKVEVLDLLPGDEAGVKSATIQVSGPNAYGYLKSEKGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V VLP + +V+I ED++IDT R+ G+GGQHVN TDSAVRITH+PTGI+V Sbjct: 176 SFASVDVLPVVDDEVEVNIRPEDLKIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ NR AMK+L+A+L D+E ++ E +A R Q +IR+Y F + Sbjct: 236 NERSQTYNRAAAMKLLKAKLIDLELRKKEEELAALRGDQ-KDIAWGSQIRSYVFHPYSLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR + + + V+ G ID+ I L + Sbjct: 295 KDHRTGVEVGNVYAVMDGAIDEFIAAYLKQKR 326 >gi|55821157|ref|YP_139599.1| peptide chain release factor 2 [Streptococcus thermophilus LMG 18311] gi|55823068|ref|YP_141509.1| peptide chain release factor 2 [Streptococcus thermophilus CNRZ1066] gi|116627872|ref|YP_820491.1| peptide chain release factor 2 [Streptococcus thermophilus LMD-9] gi|55737142|gb|AAV60784.1| peptide chain release factor 2 [Streptococcus thermophilus LMG 18311] gi|55739053|gb|AAV62694.1| peptide chain release factor 2 [Streptococcus thermophilus CNRZ1066] gi|116101149|gb|ABJ66295.1| bacterial peptide chain release factor 2 (bRF-2) [Streptococcus thermophilus LMD-9] Length = 337 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E RM+E + I + ++ + K ++ K+ + + Sbjct: 1 MEEDIALLENRMTEPDFWNDNIAAQKTSQELNELKMKYETFNNMKELSDETELYLEMLEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + + ++K + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSVQEELEETLEKLDKIMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+RY + +KVE L D+ G K + G + +K E GVHR+ R+ Sbjct: 117 LLRMYQRYGNAKGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIEGFIDAYLKWRMEE 337 >gi|320547182|ref|ZP_08041476.1| peptide chain release factor RF2 [Streptococcus equinus ATCC 9812] gi|320448169|gb|EFW88918.1| peptide chain release factor RF2 [Streptococcus equinus ATCC 9812] Length = 336 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 186/341 (54%), Gaps = 12/341 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E +M+E + I + ++ + +++ ++ + + + Sbjct: 1 MEEDIALLENKMTEPDFWNDNIAAQKTSQELNSLKQTYETFNEMQELSDETELYLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D D Q E+ +++ ++ LL + D + ILEI G+GG+EA + Sbjct: 61 D----DSIQSELEETLEKLDKIMTSYEMTLLLSEPYDRNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY RY + +KVE L D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LFRMYTRYGNAKGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS ++V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFSSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F+ + DHR + +++ V+ G ID I+ L Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIDGFIDAFLKWR 334 >gi|45443320|ref|NP_994859.1| peptide chain release factor 2 [Yersinia pestis biovar Microtus str. 91001] gi|108806377|ref|YP_650293.1| peptide chain release factor 2 [Yersinia pestis Antiqua] gi|108813248|ref|YP_649015.1| peptide chain release factor 2 [Yersinia pestis Nepal516] gi|145597933|ref|YP_001162009.1| peptide chain release factor 2 [Yersinia pestis Pestoides F] gi|170023172|ref|YP_001719677.1| peptide chain release factor 2 [Yersinia pseudotuberculosis YPIII] gi|186896595|ref|YP_001873707.1| peptide chain release factor 2 [Yersinia pseudotuberculosis PB1/+] gi|270487483|ref|ZP_06204557.1| peptide chain release factor 2 [Yersinia pestis KIM D27] gi|294502944|ref|YP_003567006.1| peptide chain release factor RF-2 [Yersinia pestis Z176003] gi|21960210|gb|AAM86823.1|AE013928_8 peptide chain release factor RF-2 [Yersinia pestis KIM 10] gi|45438189|gb|AAS63736.1| peptide chain release factor RF-2 [Yersinia pestis biovar Microtus str. 91001] gi|108776896|gb|ABG19415.1| bacterial peptide chain release factor 2 (bRF-2) [Yersinia pestis Nepal516] gi|108778290|gb|ABG12348.1| bacterial peptide chain release factor 2 (bRF-2) [Yersinia pestis Antiqua] gi|145209629|gb|ABP39036.1| bacterial peptide chain release factor 2 (bRF-2) [Yersinia pestis Pestoides F] gi|169749706|gb|ACA67224.1| peptide chain release factor 2 [Yersinia pseudotuberculosis YPIII] gi|186699621|gb|ACC90250.1| peptide chain release factor 2 [Yersinia pseudotuberculosis PB1/+] gi|262360979|gb|ACY57700.1| peptide chain release factor RF-2 [Yersinia pestis D106004] gi|262364919|gb|ACY61476.1| peptide chain release factor RF-2 [Yersinia pestis D182038] gi|270335987|gb|EFA46764.1| peptide chain release factor 2 [Yersinia pestis KIM D27] gi|294353403|gb|ADE63744.1| peptide chain release factor RF-2 [Yersinia pestis Z176003] Length = 310 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + + I++ I +Q ++ L + + + + + +A + + Sbjct: 1 MGKERSTLEEIVTTIDQLEQGLEDVSGLLELAVEADDEETFNET-----IAELEVLDGKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D +C L+++AG+GG+EA + L RMY R+A R +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDRANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +I Sbjct: 116 GDVAGLKSATVKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY+ E ++ ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYEFEMQKKNADKQVLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|283783522|ref|YP_003374276.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05] gi|283441040|gb|ADB13506.1| peptide chain release factor 2 [Gardnerella vaginalis 409-05] Length = 378 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK A++E + +E D + + +S S++ Q +D T+I Sbjct: 25 DVDSLKATIADLEKQAAEPGLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + +++ + +++ L D +S ++ IR+G GG +AA Sbjct: 85 LGQEEGDADSMSEAQEELGNIAHEL--DDMEVQTLLDGEYDARSAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K +++ +S ++ G K + + R+ E G HR+ R Sbjct: 143 FAQMLLRMYLRWAERNGYKTKMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR T + V V+P A +DIP DIR+DT +ASG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTGFSAVEVIPLVEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 TH+PTG++V+ E+SQ QNR AM VL++RL ++ E +A +K G Sbjct: 263 THLPTGLVVSMQDERSQIQNRAAAMAVLQSRLLVLK----HAEEAAKKKELAGDIKASWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID I + + + + E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDGFIEAGIRWRHEQRVAAQKE 373 >gi|94502363|ref|ZP_01308828.1| peptide chain release factor 1 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|161833646|ref|YP_001597842.1| peptide chain release factor 1 [Candidatus Sulcia muelleri GWSS] gi|94451077|gb|EAT14037.1| peptide chain release factor 1 [Candidatus Sulcia muelleri str. Hc (Homalodisca coagulata)] gi|152206135|gb|ABS30445.1| peptide chain release factor 1 [Candidatus Sulcia muelleri GWSS] Length = 355 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 154/348 (44%), Positives = 223/348 (64%), Gaps = 8/348 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K+I LK RF E+ + + + Y+KL++EY I II+ + Y +KK+ +++ Sbjct: 9 KKIEVLKKRFYELSFLIIKPEIIHDNKKYVKLSKEYKIIYKIINYYNSYKEKKKYLKEIE 68 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++I +SD E+ + A E E+ L +I YL K ++ + ++E+RAGTGG Sbjct: 69 SLIKL-DSDKELLEFAIFEKKKNLLELEFLIKKIEYL--LKKNNNTNNVLMELRAGTGGD 125 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA +FV ++FRMY Y WK E+L+ GYKEI+ I G+ V+ +KFESGVH Sbjct: 126 EACIFVENIFRMYTMYFKELCWKYEILNMQQGTIKGYKEIIIEIQGKNVYGTLKFESGVH 185 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 RVQRVP+TE+ GR+HTSA TVA+LP E +++I L D++ +T RASG+GGQHVN T+S Sbjct: 186 RVQRVPSTESQGRLHTSAITVAILPEEDYNNNINIVLSDLKRETFRASGAGGQHVNKTES 245 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A+R+THIPTGI+ E+SQH+N +AMKVLRAR+Y E K + S RK I +GD Sbjct: 246 AIRLTHIPTGIIAECQEERSQHKNYEKAMKVLRARIYQSELKIKNEKLSKERKSLISTGD 305 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 RS +IRTYN+ QGR+TDHRIN ++Y L+ + G I+++I L + Sbjct: 306 RSAKIRTYNYPQGRVTDHRINKSIYYLDKFMNGKINEMITALKILEKE 353 >gi|25027367|ref|NP_737421.1| peptide chain release factor 2 [Corynebacterium efficiens YS-314] gi|23492648|dbj|BAC17621.1| putative translation releasing factor RF-2 [Corynebacterium efficiens YS-314] Length = 389 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 104/353 (29%), Positives = 174/353 (49%), Gaps = 12/353 (3%) Query: 5 SHKQI---CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++I +L +R E+E + ++ D + + +S + +++ + +Q D Sbjct: 40 TIEKILNPEELSDRVRELEAQAADPGLWDNPDHAQQVTSELSHVQAELRKVTELRQRLDD 99 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + + + L E+ + + LE + D + ++ IR+G G Sbjct: 100 LPIMYELAEEEGDDTSLVDEELADLRTGVEALEV----KTMLSGEYDAREAVINIRSGAG 155 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G +AA + L RMY R+A KV+V S ++ G K + G ++ ++ E G Sbjct: 156 GVDAADWAEMLMRMYIRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGDYMYGQLSVEQG 215 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HR+ R+ + GR TS A V VLP + +DIP ++R+D R+SG GGQ VNTT Sbjct: 216 AHRLVRISPFDNQGRRQTSFAEVEVLPVVEQVDSIDIPDSEVRVDVYRSSGPGGQSVNTT 275 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVR+THIPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ Sbjct: 276 DSAVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLQAKLLEKKRQEERAEMDAL--GAGGN 333 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R N + VL G ID ++ + A+ Sbjct: 334 ASWGNQMRSYVLHPYQMVKDLRTNYEVNDPSKVLDGDIDGLLEAGIRWRMAQQ 386 >gi|307702035|ref|ZP_07639043.1| peptide chain release factor 2 [Streptococcus mitis NCTC 12261] gi|307616680|gb|EFN95869.1| peptide chain release factor 2 [Streptococcus mitis NCTC 12261] Length = 329 Score = 219 bits (557), Expect = 6e-55, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 181/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + + Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHEEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 V----EQLSELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTNFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|302391071|ref|YP_003826891.1| bacterial peptide chain release factor 2 (bRF-2) [Acetohalobium arabaticum DSM 5501] gi|302203148|gb|ADL11826.1| bacterial peptide chain release factor 2 (bRF-2) [Acetohalobium arabaticum DSM 5501] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 116/345 (33%), Positives = 190/345 (55%), Gaps = 16/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L+ + ++ MS+ D ++++E +A+ ++ +++ +E + L + Sbjct: 26 DKLEEKHDQLRAEMSKPGFWDDSSRAQQISKEASALKDMMESFDRLEERLEEIEVLIELG 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + DS ++ + + E E+ ++ D S +L I G GG ++ Sbjct: 86 QEEDDDSVTEEIKDK-----LQGLEEDIEELELKVVMDGEYDQNSALLSINPGAGGIDSQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + +++E L ++ G K + I+G + +K E GVHR+ Sbjct: 141 DWAEMLLRMYNRWAEKKDYQIETLEFMAGEEAGIKSVTLQINGPYAYGYLKAEKGVHRMV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 RV ++SGR HTS A+V VLP +ID+DI D++I+T RASG+GGQHVNTTDSAVR Sbjct: 201 RVSPFDSSGRRHTSFASVEVLPEIEDDIDIDIEKNDLKIETYRASGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH PTGI+V S +SQH+NR +AM++L+A+L+D +++ A + S R K I G Sbjct: 261 ITHQPTGIVVQCQSLRSQHKNRQKAMQILKAKLFDYMKEKQAEKLSEIRGEKKDISWG-- 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + I DHR NL + +E V+ G +D +I L Sbjct: 319 -SQIRSYFFDPYQLIKDHRTNLEINNIEAVMDGELDPLIEAYLKE 362 >gi|238754561|ref|ZP_04615915.1| Peptide chain release factor 2 [Yersinia ruckeri ATCC 29473] gi|238707192|gb|EEP99555.1| Peptide chain release factor 2 [Yersinia ruckeri ATCC 29473] Length = 310 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 170/316 (53%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +++ I++ I Q ++ L + + + + + A + + Sbjct: 1 MGKERSSLEEIVTTIDELAQGLEDVSGLLELAIEADDEETFDEAV-----AELEILDGKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D +C L+++AG+GG+EA + L RMY R+A + +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +I Sbjct: 116 GDVAGLKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY+ E ++ ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYEFEMQKKNADKQMLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|49188023|ref|YP_031276.1| peptide chain release factor 2 [Bacillus anthracis str. Sterne] gi|49181950|gb|AAT57326.1| peptide chain release factor 2 [Bacillus anthracis str. Sterne] Length = 326 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNKAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|227832559|ref|YP_002834266.1| peptide chain release factor RF-2 [Corynebacterium aurimucosum ATCC 700975] gi|262183572|ref|ZP_06042993.1| peptide chain release factor 2 [Corynebacterium aurimucosum ATCC 700975] gi|254790912|sp|C3PES4|RF2_CORA7 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|227453575|gb|ACP32328.1| peptide chain release factor RF-2 [Corynebacterium aurimucosum ATCC 700975] Length = 368 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 168/349 (48%), Gaps = 11/349 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 + R E+E + + D + + +S +K+ + + +DL + + Sbjct: 26 EAVSERVRELEAQAGDPSLWDDPDHAQKVTSELSAQQAKLRKLNSLRGRIEDLPVMSELA 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D ++L + E+ + I LE D++ ++ IR+G GG +AA Sbjct: 86 EEEGDEASQELVETELKELGAAIESLEVTTM----LSGEYDEREAVINIRSGAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV+V S ++ G K + G ++ ++ E G HR+ R Sbjct: 142 WAEMLMRMYTRWAEKNGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +++P ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAEVEVLPVVEQTDSIEVPDSEVRVDVYRSSGPGGQSVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ + Sbjct: 262 THIPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +R+Y + + D R N + VL G ID + + A+ Sbjct: 320 MRSYVLHPYQMVKDLRTNYEVGDPSKVLDGDIDGFLESGIRWRMAQQEA 368 >gi|15672953|ref|NP_267127.1| peptide chain release factor 2 [Lactococcus lactis subsp. lactis Il1403] gi|281491474|ref|YP_003353454.1| peptide chain release factor 2 [Lactococcus lactis subsp. lactis KF147] gi|24638157|sp|Q9CGX1|RF2_LACLA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|12723911|gb|AAK05069.1|AE006331_9 peptide chain release factor 2 [Lactococcus lactis subsp. lactis Il1403] gi|281375192|gb|ADA64705.1| Peptide chain release factor 2 (RF-2) [Lactococcus lactis subsp. lactis KF147] gi|326406515|gb|ADZ63586.1| peptide chain release factor RF-2 [Lactococcus lactis subsp. lactis CV56] Length = 365 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 173/345 (50%), Gaps = 10/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E M++ + + + + +K Y ++ T++ Sbjct: 25 DLERLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNNMLEEAQTMLE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D E++ + +A+ ++I E EI D + +LEI G+GG+E+ Sbjct: 85 MLQEEADEEMQAELEEMTIALGQKIESYELEIM----LNQPYDHMNAVLEIHPGSGGTES 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ +KVE+L D D G K + GR + ++ E GVHR+ Sbjct: 141 QDWGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVALRFVGRNAYGFLRGEKGVHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS +V V+PE I+VD+ D+++DT R+ G+GGQ+VN + V Sbjct: 201 VRISPFDSANRRHTSFTSVDVMPELDDSIEVDVRDADVKMDTFRSGGAGGQNVNKVSTGV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V ++ +++Q+ NR +AM +L+++LY +E + E R Q Sbjct: 261 RLTHIPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQ-SEISWG 319 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + + D R ++ V+ G +D IN L + Sbjct: 320 SQIRSYVFMPYQLVKDTRTGYETGQISNVMDGELDGFINAYLRWN 364 >gi|257886811|ref|ZP_05666464.1| peptide chain release factor 2 [Enterococcus faecium 1,141,733] gi|257822865|gb|EEV49797.1| peptide chain release factor 2 [Enterococcus faecium 1,141,733] Length = 327 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 172/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + + +E +++ ++ + + + E Sbjct: 1 MAEPGFWDDSEAAQKVISENNANKETYDQFHSLAEELEEIELMVDMLQEEPDAVMQEEAE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + N +L D + I+E+ G GG+E+ + L RMY R+A Sbjct: 61 TRINALDEKM--NTYELSMLLDGPYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRWAEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + I G F +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGYQVETLDYQAGDEAGIKSVTLLIKGHNAFGYLKAEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE ID++I +D++IDT RASG+GGQH+N T+SAVRITH+PTG +V + +++ Sbjct: 179 SVDVMPELDETIDIEINPDDLKIDTYRASGAGGQHINKTESAVRITHLPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G +IR+Y F + Sbjct: 239 SQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N+ ++ V+ G +D I+ L H Sbjct: 296 DHRTNVETGNVQAVMDGDLDLFIDGYLKMH 325 >gi|228477420|ref|ZP_04062056.1| peptide chain release factor 2 [Streptococcus salivarius SK126] gi|228250855|gb|EEK10043.1| peptide chain release factor 2 [Streptococcus salivarius SK126] Length = 337 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E RM+E + I + ++ + K ++ ++ + + Sbjct: 1 MEEDIALLENRMTEPDFWNDNIAAQKTSQELNELKMKYETFNNMQELSDETELYLEMLEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + + ++K + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSVQEELEETLEKLDKIMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+RY + +KVE L D+ G K + G + +K E GVHR+ R+ Sbjct: 117 LLRMYQRYGNAKGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIEGFIDAYLKWRMEE 337 >gi|30023221|ref|NP_834852.1| peptide chain release factor 2 [Bacillus cereus ATCC 14579] gi|29898781|gb|AAP12053.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bacillus cereus ATCC 14579] Length = 325 Score = 219 bits (557), Expect = 7e-55, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 27 PSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 D + ++ K D+ + + H ++ + + +L Sbjct: 4 GFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVK 63 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 I++ LL D D + ILE+ G GG+E+ + L RMY R+A R Sbjct: 64 GLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKR 118 Query: 144 KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HTS + Sbjct: 119 GFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS 178 Query: 204 VAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKS 261 V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V SE+S Sbjct: 179 CEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERS 238 Query: 262 QHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITD 318 Q +NR AMK+L+A+LY + + E R Q IG G +IR+Y F + D Sbjct: 239 QIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSLVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAH 347 HR N + ++ V+ G ID I+ L + Sbjct: 296 HRTNTEVGNVQAVMDGEIDPFIDAYLRSR 324 >gi|227499885|ref|ZP_03929978.1| peptide chain release factor RF2 [Anaerococcus tetradius ATCC 35098] gi|227217994|gb|EEI83267.1| peptide chain release factor RF2 [Anaerococcus tetradius ATCC 35098] Length = 333 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 101/334 (30%), Positives = 166/334 (49%), Gaps = 8/334 (2%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + K ++ A +S ++ Y + ++ +D ++ + Sbjct: 2 EKKSQSPDFWNDSDKASQIMADLSLKKEDLNEYKKLEEGIRDNVDLLDLVELSDNKEEDT 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 V + + +L +++ D +C + I AG GG EA + LFRMY+RY Sbjct: 62 VNAVEESLEALYKLADKMKLKTQLSGEYDKNNCYISINAGAGGLEATDWADMLFRMYKRY 121 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K E+ ++ + GG K + G + +K E GVHR+ R+ ++ R HT Sbjct: 122 FDNVGYKYELKDLNNEEAGGIKSATLHVKGPYAYGYLKGEKGVHRLVRISPFDSQSRRHT 181 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE + ++DI D+RIDT RASG+GGQHVN TDSAVRITHIPTG++ + Sbjct: 182 SFASVDVFPELDDNLEIDIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGVVATSQ 241 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQ QN+ AM +L ++L ++ + + + QI G +IR+Y F Sbjct: 242 AERSQIQNKQTAMNLLMSKLVQIKEEEQREKIEDIQGKYSQIAWG---SQIRSYVFQPYT 298 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + DHR N + +E V+ G + I+ L + Sbjct: 299 MVKDHRTNYEMGNVEAVMDGDLQGFIDAYLASKN 332 >gi|116511800|ref|YP_809016.1| peptide chain release factor 2 [Lactococcus lactis subsp. cremoris SK11] gi|122940216|sp|Q02ZM8|RF2_LACLS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|116107454|gb|ABJ72594.1| bacterial peptide chain release factor 2 (bRF-2) [Lactococcus lactis subsp. cremoris SK11] Length = 365 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 171/343 (49%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E M++ + + + + +K Y ++ T++ Sbjct: 25 DLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNNMLEEAQTMLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ + Q+E+ + + + ++ D + +LEI G+GG+E+ Sbjct: 85 MLQEEAD--EDMQVELEEMTTALGQKIESYELEIMLNQPYDHMNAVLEIHPGSGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ +KVE+L D D G K + GR + ++ E GVHR+ R Sbjct: 143 WGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVAIRFVGRNAYGFLRGEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+V++ D+++DT R+ G+GGQ+VN + VR+ Sbjct: 203 ISPFDSANRRHTSFTSVDVMPELDDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V ++ +++Q+ NR +AM +L+++LY +E + E R Q + Sbjct: 263 THVPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQ-SEISWGSQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y F + + D R ++ V+ G ID IN L + Sbjct: 322 IRSYVFMPYQLVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364 >gi|242372989|ref|ZP_04818563.1| peptide chain release factor 2 [Staphylococcus epidermidis M23864:W1] gi|242349315|gb|EES40916.1| peptide chain release factor 2 [Staphylococcus epidermidis M23864:W1] Length = 386 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 107/353 (30%), Positives = 175/353 (49%), Gaps = 17/353 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M++ D K + A+ I++ + ++ Sbjct: 40 DLENKETNIQEYEEMMADPGFWDDQNKAQDIIDKNNALKSIVNGYHDLANEVEDMSATRE 99 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + + EK + LL D + ILE+ G GG+E Sbjct: 100 LLQEEYDEDMKAELEEEVIQFKEKMDQ-----YELQLLLDGPHDANNAILELHPGAGGTE 154 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY+RY + +KVE + D+ G K + I G + +K E GVHR Sbjct: 155 SQDWASMLLRMYQRYGEQKGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHR 214 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 215 LVRISPFDSSGRRHTSFASCDVIPDFDNDEIEIEINPDDITVDTFRASGAGGQHINKTES 274 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH PTGI+V +E+SQ +NR AMK+L+++LY ++ + E + R Q IG Sbjct: 275 AIRITHHPTGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGW 334 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 G +IR+Y F + DHR N K++ V+ G I+ I L Sbjct: 335 G---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGEIEPFIEAYLRKEMDNQ 384 >gi|189425791|ref|YP_001952968.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ] gi|189422050|gb|ACD96448.1| hypothetical protein Glov_2735 [Geobacter lovleyi SZ] Length = 372 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 172/346 (49%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E++ R++ D + + I + +D ++ D+ +I Sbjct: 24 DLDSKREELQELDARIAAPGFWDDPSGSQDILKKRTVIEKLLQSWDSLNRQADDVRVMIE 83 Query: 68 --DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +SD + ++ + E E + T D C + + +G GG+E+ Sbjct: 84 LGEESSDEDTLTEVHQMNERLKSGVEEAEFQRM----LSGTHDRNGCFVSVNSGAGGTES 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RM RY + WK + D ++ G K ++SG + +K E+GVHR+ Sbjct: 140 QDWANMLLRMLLRYCEKKGWKAVITDYQDGEEAGLKSATFSVSGEFAYGHLKAEAGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSA 243 R+ +++ R HTS A+V V PE E D+DI D+R+DT R+SGSGGQHVNTTDSA Sbjct: 200 VRLSPFDSNNRRHTSFASVFVFPEIEEEDIDIRIADSDLRVDTYRSSGSGGQHVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRITH+PT I+V SE+SQ NR AMKVLRA+LY+ E + + S K +IG G Sbjct: 260 VRITHLPTNIVVACQSERSQILNRATAMKVLRAKLYEKEMEERNAKASEIAGEKREIGWG 319 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D R + + VL G +DD + P L Sbjct: 320 ---SQIRSYVLHPYKMVKDLRTGVESGNPDSVLDGALDDFVIPFLM 362 >gi|167772028|ref|ZP_02444081.1| hypothetical protein ANACOL_03402 [Anaerotruncus colihominis DSM 17241] gi|167665826|gb|EDS09956.1| hypothetical protein ANACOL_03402 [Anaerotruncus colihominis DSM 17241] Length = 374 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 169/340 (49%), Gaps = 6/340 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ + AE+E + + + + + + + K+ D+ D T+IG Sbjct: 28 DALRRKLAELEEQTTAPGFWNDVERSQKNQLETARVRGKLEACDKLNALYDDTLTLIGLA 87 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D E + E LA + L D + I+ AG GG+EA + Sbjct: 88 --DEENDESVYSEALADVERFESDLETQKLSTLLTGEYDANNAIMTFHAGAGGTEAQDWA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+A + ++L D D+ G K I+G + ++ E+GVHR+ RV Sbjct: 146 QMLYRMYTRWAERHGFTYKILDYLDGDEAGLKSASILITGDNAYGFLRSEAGVHRLVRVS 205 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V VLPE + V+I EDI++D R+SG+GGQH+N T SAVR+TH Sbjct: 206 PFDASGRRHTSFASVEVLPELPDDHSVEINPEDIKMDVFRSSGAGGQHINKTSSAVRLTH 265 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +E+SQ QNR MK+L A+L +++ + + + Q+ +IR Sbjct: 266 IPTGIVVSCQNERSQFQNREMCMKMLTAKLVEIKEREHLANINEIKGEQM-QIAWGSQIR 324 Query: 308 TYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR + V+ G +D IN L A Sbjct: 325 SYVFMPYTLAKDHRTGFESGNINAVMDGDLDGFINAYLKA 364 >gi|302865524|ref|YP_003834161.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC 27029] gi|315502072|ref|YP_004080959.1| peptide chain release factor 2 [Micromonospora sp. L5] gi|302568383|gb|ADL44585.1| peptide chain release factor 2 [Micromonospora aurantiaca ATCC 27029] gi|315408691|gb|ADU06808.1| peptide chain release factor 2 [Micromonospora sp. L5] Length = 373 Score = 218 bits (556), Expect = 7e-55, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 164/350 (46%), Gaps = 7/350 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ + A +E S D K + + +S + +I+ + D ++ Sbjct: 25 DLDKLREQKARLEQEASAPDLWDDQAKAQQVTSQLSYVNGEITKLGDLRSRLDDAGVLLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + L ++E E + L D + ++ IRAG GG +AA Sbjct: 85 LAQAEDDPGALTEVESEITGLTKAIQE--MEVRTLLSGEYDSREALVAIRAGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + EV +S ++ G K T+ + + ESG HR+ R Sbjct: 143 FAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +DIP ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVTEQTDHIDIPENEVRVDVYRSSGPGGQSVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN+ AM+VL+ARL + +R+ + + + + ++ Sbjct: 263 THIPTGIVVTCQNEKSQLQNKASAMRVLQARLLERKRQEEEEKLAGLKTG--STSSWGDQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +R+Y + + D R V G +D I + + + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEQETGNPSSVFDGDLDSFIEAGIRWRKQQQLSA 370 >gi|254458681|ref|ZP_05072105.1| peptide chain release factor 2 [Campylobacterales bacterium GD 1] gi|207084447|gb|EDZ61735.1| peptide chain release factor 2 [Campylobacterales bacterium GD 1] Length = 369 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 108/347 (31%), Positives = 177/347 (51%), Gaps = 14/347 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L +R EIE ++ + K+ +E + + K SI + +L+ + Sbjct: 27 DKLTSRLEEIEELENDQDFWNDADNAAKIQKEKTQLQRKLDKYSIAKDAITDALELYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + I + ++ +L + +L D + IL I G GG+E+ Sbjct: 87 KEENDEDSIE-----LCFSDASDLEQLILNMEVEVLLSGETDSNNAILSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY+R+A + VEVL D+ G K+ I G + +K E+G+HR+ Sbjct: 142 DWAEMLLRMYKRWAERHGFGVEVLDYQVGDEAGIKDASILIKGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS ++V V PE + + +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFSSVMVSPEIDDDINIVVEDKDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHI T ++V +++SQH+N+ AMK+LR+RLY++E E + K +IG G Sbjct: 262 ITHIATNVIVQCQNDRSQHKNKATAMKMLRSRLYELELAAQKAEIAGIAKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y ++ D R N + +L G ID +I +L A + Sbjct: 319 QIRSYVMQPYQQVKDTRSNEAYSNVSGILDGDIDKMIEGVLIAQNKQ 365 >gi|260775420|ref|ZP_05884317.1| peptide chain release factor 2 [Vibrio coralliilyticus ATCC BAA-450] gi|260608601|gb|EEX34766.1| peptide chain release factor 2 [Vibrio coralliilyticus ATCC BAA-450] Length = 320 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 168/323 (52%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +A+ ++ I +Q ++ L + + ++ Sbjct: 3 NEPERAQALGKERSALEAVVETIDQLEQGVEDVDGLLELAVEEEDQETFDEIEPE----- 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ ++ + + D C +++++G+GG+EA + + RMY R+A + +K Sbjct: 58 LAELEAKLEKLEFRRMFSGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ + G K ISG + ++ E+GVHR+ R ++SGR HTS A+ + Sbjct: 118 TEVIEVSEGEVAGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFI 177 Query: 207 LPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+ Sbjct: 178 YPEIDDNIDIDINPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 238 NKDQAMKQLRAKLFELEIQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTS 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 295 VENRNTQAVLDGDLDKFIEASLK 317 >gi|83589099|ref|YP_429108.1| peptide chain release factor 2 [Moorella thermoacetica ATCC 39073] gi|83572013|gb|ABC18565.1| bacterial peptide chain release factor 2 (bRF-2) [Moorella thermoacetica ATCC 39073] Length = 330 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 169/336 (50%), Gaps = 14/336 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M + + ++ + K++ Y + + + D+ + + D + + Sbjct: 1 MLAPGFWEDRARAEAVGKRLTYLKEKLARYRELESKCADVRELWQLALAEDDHSLEEE-- 58 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + + L D + IL + G GG+E+ + L RMY R+ Sbjct: 59 --IARDLAAVEGKVEGQLLATLLNGPYDRHNAILSLHPGAGGTESQDWAAMLLRMYNRWC 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 R ++VE+L + ++ G K + G + ++ E GVHR+ R+ +A+GR HTS Sbjct: 117 EDRGYQVELLDYLEGEEAGLKSATILVKGENAYGYLQAEKGVHRLVRISPFDAAGRRHTS 176 Query: 201 AATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A+V V+PE + +V+I +D++IDT R+ G+GGQHVN TDSAVRITH+PTGI+V + Sbjct: 177 FASVDVIPEVEADEEVEINPDDLKIDTFRSQGAGGQHVNKTDSAVRITHLPTGIVVTCQN 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-R 315 E+SQH NRL AMK+L+ARL ++R+ E + R Q I G +IR+Y F Sbjct: 237 ERSQHANRLSAMKILQARLAALKRQEQEAELAQIRGEQREIAWG---SQIRSYVFHPYSL 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR + ++ V+ G ID I L + K Sbjct: 294 VKDHRTGVETGNIQAVMDGQIDPFIQAYLHWQRRKQ 329 >gi|238926688|ref|ZP_04658448.1| peptide chain release factor RF2 [Selenomonas flueggei ATCC 43531] gi|238885445|gb|EEQ49083.1| peptide chain release factor RF2 [Selenomonas flueggei ATCC 43531] Length = 368 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 173/350 (49%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 +I + + AE+E +M E D KL +E A + + K ++ Sbjct: 19 MRISLEIPAKEEKIAELEYKMGEPSFWDDAAAAQKLNQELADLKGGVDTYKGLMAKYEDA 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L+ + G D+ + D + E+ I + + L +L D + IL + AG Sbjct: 79 ETLYEM-GIEEGDASMEDDIRAELDLITEGLETL----QLEVLLSGDYDANNAILTLHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EA + L RMY R+A + VE D+ G K I G + +K E Sbjct: 134 AGGTEAQDWTQMLLRMYGRWAERHGFAVETADLQPGDEAGVKSATLFIKGHNAYGFLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++ R HTS + V+PE + ++D+R+D RASG+GGQH+N Sbjct: 194 KGVHRLVRISPFDSQARRHTSFSACDVMPEIDDAVEVPINMDDVRVDYYRASGAGGQHIN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T SAVR+TH PTGI+V +E+SQ QN+ + MK+LRA+L+++E+++ E + +Q Sbjct: 254 KTSSAVRMTHEPTGIVVQCQNERSQLQNKEQCMKMLRAKLFELEQEKKEEEIAKLEGVQQ 313 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R N ++ V+ G ID I L A Sbjct: 314 K-IEWGSQIRSYVFQPYTMVKDVRTNAETGNVQAVMDGEIDPFIRAYLNA 362 >gi|269925864|ref|YP_003322487.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum terrenum ATCC BAA-798] gi|269789524|gb|ACZ41665.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermobaculum terrenum ATCC BAA-798] Length = 372 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 6/344 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + + + ++E R + S + + ++ + ++ ++ + ++ +D + Sbjct: 22 HLDLENKRLEIEKLEQRAASSELWADPAEAQKVMKNLNDLKDQLEVWSKIERRLEDAEVL 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + + + + N + LL + D + I+ I A GG +A Sbjct: 82 LDLAYEEDSASDFHEAA--SQIRALENQLNHLELELLLSGSYDQEDAIIAIHAREGGIDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R W+ E++SS + ++ GYK I G+ + K E+G HR+ Sbjct: 140 QDWASMLVRMYLRWAQRRGWQAELVSSIEGEEAGYKSATIEIKGKYAYGYAKAEAGQHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + + R HTS A V VLP+ E I ED++IDT RAS +GGQHVN T SAV Sbjct: 200 VRLSPFDQAHRRHTSFALVEVLPDVEETPEVQIREEDLKIDTYRASSAGGQHVNKTSSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V +E+SQ QN+ A+K+LRARL ++E +R A E++ + I +G Sbjct: 260 RITHIPTGIVVTCQNERSQFQNKETALKILRARLLELELRRQAEEQARLKGEHIATG-WG 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + DHR + +E VL G ID I L+ Sbjct: 319 SQIRSYVLHPYTMVKDHRTGYEVSDVESVLDGEIDPFIEAYLSQ 362 >gi|65317159|ref|ZP_00390118.1| COG1186: Protein chain release factor B [Bacillus anthracis str. A2012] Length = 325 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 164/329 (49%), Gaps = 16/329 (4%) Query: 27 PSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 D + ++ K D+ + + H ++ + + +L Sbjct: 4 GFWDDQQGAQAVINEANALKDMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVK 63 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 I++ LL D D ILE+ G GG+E+ + L RMY R+A R Sbjct: 64 GLIQEMNE-----YELQLLLSDPYDKNKAILELHPGAGGTESQDWGSMLLRMYTRWAEKR 118 Query: 144 KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HTS + Sbjct: 119 GFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS 178 Query: 204 VAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKS 261 V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V SE+S Sbjct: 179 CEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERS 238 Query: 262 QHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITD 318 Q +NR AMK+L+A+LY + + E R Q IG G +IR+Y F + D Sbjct: 239 QIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSLVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAH 347 HR N + ++ V+ G ID I+ L + Sbjct: 296 HRTNTEVGNVQAVMDGEIDPFIDAYLRSR 324 >gi|291547275|emb|CBL20383.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus sp. SR1/5] Length = 332 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D + + + I Y + + +D+ T+I +++ + +I+ Sbjct: 1 MEAPDFWDNAEASQMKMKQLKSLKDDIETYHNLETQMEDMETMIEMGYEENDPEIVPEIQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E + + L D ++ I+++ AG GG+EA + G L+RMY R+A Sbjct: 61 EMLDEFQASFDSIRVKTL--LSGEYDGENAIIKLNAGAGGTEACDWCGMLYRMYSRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL D D+ G K + ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFALEVLDYLDGDEAGVKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ + DV+I +DIRIDT R+SG+GGQH+N T SA+RITH PTGI+V +E+ Sbjct: 179 SCDVMPDIKKDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RIT 317 SQH N+ +AM++L+A+LY ++++ + S R IG G+ +IR+Y + Sbjct: 239 SQHMNKDKAMQMLKAKLYLLKQQEAEEKLSGIRGEVTDIGWGN---QIRSYVLQPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N ++ VL G ID IN L Sbjct: 296 DHRTNEETGNVDAVLDGGIDIFINAYLKW 324 >gi|270292341|ref|ZP_06198552.1| peptide chain release factor 2, programmed [Streptococcus sp. M143] gi|270278320|gb|EFA24166.1| peptide chain release factor 2, programmed [Streptococcus sp. M143] Length = 329 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 185/333 (55%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D +RD Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVRDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VEQLTELDKMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|323126937|gb|ADX24234.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 327 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 180/333 (54%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + S + ++ + + D ++D + Sbjct: 1 MTEPDFWNDNIAAQKISQKLNELKSTYETFHNMQELSDETELYLEMLEEDDSVKDDLEAS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + E LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 61 LETLGQILASYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFV 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RA+K+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAIKMLQAKLYQLEQEKKAAEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N + +++ V+ G I+ I+ L + Sbjct: 294 DHRTNYEVAQVDKVMDGDIEGFIDAYLKWRMSD 326 >gi|313895325|ref|ZP_07828882.1| peptide chain release factor 2 [Selenomonas sp. oral taxon 137 str. F0430] gi|312976220|gb|EFR41678.1| peptide chain release factor 2 [Selenomonas sp. oral taxon 137 str. F0430] Length = 368 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 174/349 (49%), Gaps = 10/349 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +I + + AE+E +MSE D + ++ + + Y + +D Sbjct: 19 MRISLEIPAKEEKIAELEYKMSEPTFWDDAAAAQKVNQELAGLKGGVDTYKALAAKYEDA 78 Query: 63 HTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 T+ +D + + E+ I + + L +L D + IL + AG Sbjct: 79 ETLYEMGIEENDPSMERDIRAELDLIAEGLETL----QLEVLLSGEYDANNAILTLHAGA 134 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EA + L RMY R+A + VE D+ G K I G + +K E Sbjct: 135 GGTEAQDWTQMLLRMYGRWAERHGFTVETADLQPGDEAGVKSASLFIKGHNAYGFLKSEK 194 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ ++ R HTS + V+PE + ++VDI ++D+R+D RASG+GGQH+N Sbjct: 195 GVHRLVRISPFDSQARRHTSFSACDVMPEIDDAVEVDIDMDDVRVDYYRASGAGGQHINK 254 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH PTGI+V +E+SQ QN+ + +K+LRA+L+++E+++ E + +Q Sbjct: 255 TSSAVRMTHEPTGIVVQCQNERSQLQNKEQCLKMLRAKLFELEQEKKEEELAKLEGVQQK 314 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R N ++ V+ G ID I L A Sbjct: 315 -IEWGSQIRSYVFQPYTMVKDVRTNAETGNVQAVMDGEIDPFIRAYLNA 362 >gi|320530290|ref|ZP_08031358.1| peptide chain release factor 2 [Selenomonas artemidis F0399] gi|320137433|gb|EFW29347.1| peptide chain release factor 2 [Selenomonas artemidis F0399] Length = 368 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 175/349 (50%), Gaps = 10/349 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +I + + AE+E +MSE D + ++ + + Y + +D Sbjct: 19 MRISLEIPAKEEKIAELEYKMSEPTFWDDAAAAQKVNQELAGLKGGVDTYKALAAKYEDA 78 Query: 63 HTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 T+ +D + + E+ AI + + L +L D + IL + AG Sbjct: 79 ETLYEMGIEENDPTMEGDIRAELDAIAEGLETL----QLEVLLSGEYDANNAILTLHAGA 134 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+EA + L RMY R+A + VE D+ G K I G + +K E Sbjct: 135 GGTEAQDWTQMLLRMYGRWAERHGFSVETADLQPGDEAGVKSASLFIKGHNAYGFLKSEK 194 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ ++ R HTS + V+PE + ++VDI ++D+R+D RASG+GGQH+N Sbjct: 195 GVHRLVRISPFDSQARRHTSFSACDVMPEIDDAVEVDIDMDDVRVDYYRASGAGGQHINK 254 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH PTGI+V +E+SQ QN+ + +K+LRA+L+++E+++ E + +Q Sbjct: 255 TSSAVRMTHEPTGIVVQCQNERSQLQNKEQCLKMLRAKLFELEQEKKEEELAKLEGVQQK 314 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R N ++ V+ G ID I L A Sbjct: 315 -IEWGSQIRSYVFQPYTMVKDVRTNAETGNVQAVMDGEIDPFIRAYLNA 362 >gi|15806000|ref|NP_294700.1| peptide chain release factor 1 [Deinococcus radiodurans R1] gi|7388053|sp|P56905|RF1_DEIRA RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|6458704|gb|AAF10553.1|AE001950_5 peptide chain release factor 1 [Deinococcus radiodurans R1] Length = 375 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 145/365 (39%), Positives = 227/365 (62%), Gaps = 10/365 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 + ++ +L + F +E R+ + ++ Y +LT + + P+++ + +Q + + Sbjct: 1 MANMSRLNELVSEFGLVERRLGDPQALADGREYARLTRRHRELLPLVTLVREREQAEADL 60 Query: 60 QDLHTVIGDHNS-DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++ D + D ++++LAQ+EV ++ + E+E E+ LLLP D DD K ILE+RA Sbjct: 61 SGARELLQDPDMRDPDMKELAQLEVGGLQARLAEIEAELEVLLLPTDPDDGKDVILELRA 120 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+EA LFV DL RMYERYAA K+ VL ++++D GG ++VA ++G F +K+ Sbjct: 121 GAGGAEAGLFVMDLLRMYERYAAGLNLKLNVLDAAESDLGGASKVVAEVTGDFAFRALKW 180 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHRVQRVPATE+ GR+HTS ATVAVLPEA +V++ L ++RID R+ G+GGQ VN Sbjct: 181 ERGVHRVQRVPATESQGRIHTSTATVAVLPEAEPGEVNLDLSEVRIDVFRSQGAGGQGVN 240 Query: 239 TTDSAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 TTDSAVR + +++ +SQ +NR +A++VL ARL + ER + R Sbjct: 241 TTDSAVRAVYRAGTPDEIMVICQDGRSQIKNREKALQVLTARLAERERAAREAQERQERA 300 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYK--LEYVLQGYIDDIINPLLTAHQAKMI 352 Q+GSGDRSE+IRTYN+ Q R+TDHR+ L+ V+ G + +++ L A + + + Sbjct: 301 SQVGSGDRSEKIRTYNYPQNRVTDHRLEGEDKNHPLDAVMAGGLAPVVSALARAQREEQL 360 Query: 353 GSASE 357 + S+ Sbjct: 361 LAMSQ 365 >gi|228999928|ref|ZP_04159500.1| Peptide chain release factor 2 [Bacillus mycoides Rock3-17] gi|229007481|ref|ZP_04165078.1| Peptide chain release factor 2 [Bacillus mycoides Rock1-4] gi|228753869|gb|EEM03310.1| Peptide chain release factor 2 [Bacillus mycoides Rock1-4] gi|228759870|gb|EEM08844.1| Peptide chain release factor 2 [Bacillus mycoides Rock3-17] Length = 326 Score = 218 bits (556), Expect = 8e-55, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 27 PSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 D + ++ K D+ + + H ++ + + +L Sbjct: 4 GFWDDQQGAQTVINEANALKEMVGKFRQLDETFENLEVTHELLKEEYDEDLHEELESEVK 63 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 + + LL D D + ILE+ G GG+E+ + L RMY R+A R Sbjct: 64 SLVREMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKR 118 Query: 144 KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 +KV+ + D+ G K + I G + +K E GVHR+ R+ ++SGR HTS + Sbjct: 119 GFKVDTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS 178 Query: 204 VAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKS 261 V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V SE+S Sbjct: 179 CEVVPEFNDDIEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERS 238 Query: 262 QHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITD 318 Q +NR AMK+L+A+LY + + + + R Q IG G +IR+Y F + D Sbjct: 239 QIKNREHAMKMLKAKLYQKKLEEQQAQLNEIRGEQKEIGWG---SQIRSYVFHPYSLVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAH 347 HR N + ++ V+ G ID I+ L + Sbjct: 296 HRTNTEVGNVQAVMDGEIDPFIDAYLRSR 324 >gi|312792717|ref|YP_004025640.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179857|gb|ADQ40027.1| hypothetical protein Calkr_0478 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 372 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 116/353 (32%), Positives = 177/353 (50%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ +E S + I + KI + + + +DL Sbjct: 21 MRVSLDIDRLESELKSLENETSSPDFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + ++E ++ E + + +L D + IL I AG GG Sbjct: 81 KVLTELSLDEGNHEMAEELEKELLDLERKI--EDFKIEVLLNGPYDKNNAILSIHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+A + +KVE L ++ G K + I G + +K E GV Sbjct: 139 TEAQDWAEMLLRMYTRWAVKKGYKVETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT RASG+GGQHVN T+ Sbjct: 199 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 259 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIG 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 319 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 368 >gi|228993892|ref|ZP_04153795.1| Peptide chain release factor 2 [Bacillus pseudomycoides DSM 12442] gi|228765843|gb|EEM14494.1| Peptide chain release factor 2 [Bacillus pseudomycoides DSM 12442] Length = 327 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQTVINEANALKEMVGKFRQLDETFENLEVTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKSLVREMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KV+ + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVDTVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQH+NTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDDIEIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLNEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|310815685|ref|YP_003963649.1| peptide chain release factor 2 [Ketogulonicigenium vulgare Y25] gi|308754420|gb|ADO42349.1| peptide chain release factor 2 [Ketogulonicigenium vulgare Y25] Length = 375 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 116/335 (34%), Positives = 177/335 (52%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ KIS D +++ +D +I ++E Sbjct: 31 RLEEFNARVEDPTLWDNPEAAQKLMRDRQVLLDKISNVDALERDLRDNIELIEM--GEAE 88 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 D E A + +R++ + L D LEI +G GG+E+ + L R Sbjct: 89 GDDDVVAEAEAALRALRDVAGKKEIEALLDGEADGNDTFLEINSGAGGTESCDWASILAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + + VE+ S S ++ G K + ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYTVEMQSESPGEEAGIKSVSYKISGHNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS ++V V P I++++ +DIRIDT R+SG+GGQHVNTTDSAVRITH+PTGI Sbjct: 209 ARRHTSFSSVWVYPVVDDNIEIEVQDKDIRIDTYRSSGAGGQHVNTTDSAVRITHLPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSS+KSQHQNR AMK L++RLY +E R + + + GS +IR+Y Sbjct: 269 VVTSSQKSQHQNRDIAMKALKSRLYQIELDRRNAAINEAHESK-GSAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +D + L Sbjct: 328 YQMVKDLRTSHETSDTQGVLDGDLDGFMAATLAMD 362 >gi|218439666|ref|YP_002377995.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424] gi|218172394|gb|ACK71127.1| peptide chain release factor 2 [Cyanothece sp. PCC 7424] Length = 360 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 97/343 (28%), Positives = 165/343 (48%), Gaps = 7/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK + ++E R ++ D+ ++ + S + +Y Q + + +D + Sbjct: 16 DLPALKAKIKDLEQRAAQPEFWDSPETAQSTLQELNELKSSLELYQQWQTQLEDAKAISE 75 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + L + + + L D K +L I AG GG++A Sbjct: 76 LLELEEDTSLLQEAQTNLQQLNHEL--ERWELQQLLSGPYDAKGVLLTINAGAGGTDAQD 133 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ R +KV ++ SS+ D+ G K I GR + +K E G HR+ R Sbjct: 134 WAAMLLRMYTRWGEKRGYKVHLVESSEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVR 193 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A V ++P E +V+IP +D+ I T RA G GGQ+VN ++AVR Sbjct: 194 ISPFNANGKRQTSFAGVEIMPNIEEEALNVEIPEKDLEITTSRAGGKGGQNVNKVETAVR 253 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H+PTGI V + E+SQ QN+ +A+ +L+A+L + ++ A E + R + Sbjct: 254 VVHLPTGIAVRCTEERSQLQNKEKALALLKAKLLVIAVEQRAQEIAEIRGDMVE-AAWGN 312 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R N+ + V+ G +D I L Sbjct: 313 QIRNYVFHPYQMVKDLRTNVETSDIGAVMDGDLDAFIEAYLRQ 355 >gi|19745741|ref|NP_606877.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS8232] gi|50913897|ref|YP_059869.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS10394] gi|71903175|ref|YP_279978.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS6180] gi|94988152|ref|YP_596253.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS9429] gi|94990034|ref|YP_598134.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS10270] gi|94992039|ref|YP_600138.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS2096] gi|94993945|ref|YP_602043.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS10750] gi|306827732|ref|ZP_07461004.1| peptide chain release factor RF2 [Streptococcus pyogenes ATCC 10782] gi|19747880|gb|AAL97376.1| putative peptide chain release factor 2 [Streptococcus pyogenes MGAS8232] gi|50902971|gb|AAT86686.1| Bacterial Peptide Chain Release Factor 2 [Streptococcus pyogenes MGAS10394] gi|71802270|gb|AAX71623.1| bacterial peptide chain release factor 2 [Streptococcus pyogenes MGAS6180] gi|94541660|gb|ABF31709.1| bacterial peptide chain release factor 2 (RF-2) [Streptococcus pyogenes MGAS9429] gi|94543542|gb|ABF33590.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Streptococcus pyogenes MGAS10270] gi|94545547|gb|ABF35594.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Streptococcus pyogenes MGAS2096] gi|94547453|gb|ABF37499.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Streptococcus pyogenes MGAS10750] gi|304430050|gb|EFM33087.1| peptide chain release factor RF2 [Streptococcus pyogenes ATCC 10782] Length = 337 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E M+E + I + ++ + K + ++ + ++ + Sbjct: 1 MEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDL 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 294 SYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 337 >gi|322516704|ref|ZP_08069613.1| peptide chain release factor RF2 [Streptococcus vestibularis ATCC 49124] gi|322124737|gb|EFX96175.1| peptide chain release factor RF2 [Streptococcus vestibularis ATCC 49124] Length = 337 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E RM+E + I + ++ + K ++ ++ + + Sbjct: 1 MEEDIALLENRMTEPDFWNDNIAAQKTSQDLNELKMKYETFNNMQELSDETELYLEMLEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D I++ + + ++K + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSIQEELEETLEKLDKIMTSYE----MTLLLSEPYDHSNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+RY + +KVE L D+ G K + G + +K E GVHR+ R+ Sbjct: 117 LLRMYQRYGNAKGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIEGFIDAYLKWRMEE 337 >gi|125624350|ref|YP_001032833.1| peptide chain release factor 2 [Lactococcus lactis subsp. cremoris MG1363] gi|166223629|sp|A2RLF5|RF2_LACLM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|124493158|emb|CAL98122.1| peptide chain release factor 2 [Lactococcus lactis subsp. cremoris MG1363] gi|300071134|gb|ADJ60534.1| peptide chain release factor 2 [Lactococcus lactis subsp. cremoris NZ9000] Length = 365 Score = 218 bits (556), Expect = 9e-55, Method: Composition-based stats. Identities = 92/343 (26%), Positives = 171/343 (49%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E M++ + + + + +K Y ++ T++ Sbjct: 25 DLDRLEEEIALLENDMAQPEFWNDQAAAQKVIDESNALKAKYDNYQAMNTMLEEAQTMLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ + Q+E+ + + + ++ D + +LEI G+GG+E+ Sbjct: 85 MLQEEAD--EDMQVELEEMTTALGQKIESYELEIMLNQPYDHMNAVLEIHPGSGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ +KVE+L D D G K + GR + ++ E GVHR+ R Sbjct: 143 WGSMLMRMYTRWGEAHGFKVEILDYQDGDVAGLKSVAIRFVGRNAYGFLRGEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS +V V+PE I+V++ D+++DT R+ G+GGQ+VN + VR+ Sbjct: 203 ISPFDSANRRHTSFTSVDVMPELDDSIEVEVRDADVKMDTFRSGGAGGQNVNKVSTGVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V ++ +++Q+ NR +AM +L+++LY +E + E R Q + Sbjct: 263 THVPTGIVVQSTMDRTQYGNRDKAMAMLKSKLYQLEMDKKQAEVDELRGDQ-SEISWGSQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y F + + D R ++ V+ G ID IN L + Sbjct: 322 IRSYVFMPYQLVKDTRTGYETGQISNVMDGEIDGFINAYLRWN 364 >gi|229099612|ref|ZP_04230540.1| Peptide chain release factor 2 [Bacillus cereus Rock3-29] gi|229105789|ref|ZP_04236418.1| Peptide chain release factor 2 [Bacillus cereus Rock3-28] gi|229118678|ref|ZP_04248030.1| Peptide chain release factor 2 [Bacillus cereus Rock1-3] gi|228664870|gb|EEL20360.1| Peptide chain release factor 2 [Bacillus cereus Rock1-3] gi|228677678|gb|EEL31926.1| Peptide chain release factor 2 [Bacillus cereus Rock3-28] gi|228683908|gb|EEL37858.1| Peptide chain release factor 2 [Bacillus cereus Rock3-29] Length = 326 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQTVINEANALKDMVGKFRQLDETFENLEVTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQH+NTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|47567398|ref|ZP_00238111.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|47568468|ref|ZP_00239168.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|47569292|ref|ZP_00239977.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|222098640|ref|YP_002532698.1| peptide chain release factor 2 [Bacillus cereus Q1] gi|228936472|ref|ZP_04099270.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228988409|ref|ZP_04148500.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229141914|ref|ZP_04270440.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST26] gi|229158750|ref|ZP_04286808.1| Peptide chain release factor 2 [Bacillus cereus ATCC 4342] gi|47554063|gb|EAL12429.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|47554859|gb|EAL13210.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|47556019|gb|EAL14357.1| peptide chain release factor 2 [Bacillus cereus G9241] gi|221242699|gb|ACM15409.1| peptide chain release factor [Bacillus cereus Q1] gi|228624734|gb|EEK81503.1| Peptide chain release factor 2 [Bacillus cereus ATCC 4342] gi|228641529|gb|EEK97834.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST26] gi|228771265|gb|EEM19740.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228823304|gb|EEM69138.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 326 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 166/333 (49%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQAVINEANALKDMVGSFRQLDETFENLEITHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEIRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|322374638|ref|ZP_08049152.1| peptide chain release factor 2 [Streptococcus sp. C300] gi|321280138|gb|EFX57177.1| peptide chain release factor 2 [Streptococcus sp. C300] Length = 329 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VEQLTELDKMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+ +LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQTKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|238752991|ref|ZP_04614450.1| Peptide chain release factor 2 [Yersinia rohdei ATCC 43380] gi|238708779|gb|EEQ01038.1| Peptide chain release factor 2 [Yersinia rohdei ATCC 43380] Length = 310 Score = 218 bits (555), Expect = 9e-55, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +A+ I++ I DQ ++ L + + + + + +A + Sbjct: 1 MGKERSALEEIVTTIDQLDQGMEDVSGLLELAIEADDEETFNEA-----IAELDILDGKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D +C L+++AG+GG+EA + L RMY R+A R +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +I Sbjct: 116 GDVAGIKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY+ E ++ ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYEFEMQKKNADKQVLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|218132301|ref|ZP_03461105.1| hypothetical protein BACPEC_00159 [Bacteroides pectinophilus ATCC 43243] gi|217992816|gb|EEC58817.1| hypothetical protein BACPEC_00159 [Bacteroides pectinophilus ATCC 43243] Length = 333 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 168/328 (51%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D K E + + Y++ KQ D+ T+I D E + E Sbjct: 1 MEAPGFWDDADKSQEAMKELKSLKDSFEKYNELKQGMDDIETLIAMA--DEENDESLVPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V + + + L D + IL + AG GG+EA + L RMY R+A Sbjct: 59 VEEEFNVFEKKFDALRIGTLLSGEYDRDNAILTLHAGAGGTEACDWCQMLMRMYTRWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +K EV+ + D+ G K + I G + ++ E G+HR+ R+ A+G+ TS Sbjct: 119 KGYKTEVVDYLEGDEAGVKAVTIEIEGENAYGYLRSEHGIHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ E DV+I +D+RIDT R+SG+GGQH+N T SA+RITH+PTGI+V +E+ Sbjct: 179 SCDVMPDIEEDVDVEINDDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQHQN+ +AM++L+A+LY ++++ A + S R + + +IR+Y + DH Sbjct: 239 SQHQNKDKAMQMLKAKLYLLKKQENAEKTSDIR-GDVKDVNFGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N + + VL G ID I L Sbjct: 298 RTNEEVGNAQSVLDGNIDPFITAYLKWQ 325 >gi|315612838|ref|ZP_07887749.1| peptide chain release factor RF2 [Streptococcus sanguinis ATCC 49296] gi|315314948|gb|EFU62989.1| peptide chain release factor RF2 [Streptococcus sanguinis ATCC 49296] Length = 329 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 184/333 (55%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VEQLTELDKMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|145593537|ref|YP_001157834.1| peptide chain release factor 2 [Salinispora tropica CNB-440] gi|189040004|sp|A4X3K6|RF2_SALTO RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|145302874|gb|ABP53456.1| bacterial peptide chain release factor 2 (bRF-2) [Salinispora tropica CNB-440] Length = 373 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 103/353 (29%), Positives = 163/353 (46%), Gaps = 10/353 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ K R E S D + + + +S + +I+ + + D Sbjct: 24 LDIDRLRADKARLEE---AASAPDLWDDQARAQQVTSQLSYVNGEINKLAELRSRLDDAK 80 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++S+ L ++E E + L D + ++ IRAG GG Sbjct: 81 VLLELAEAESDPGALTEVEAEVAGLAKAIDE--MEVRTLLSGEYDSREALVAIRAGAGGV 138 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA F L RMY R+A + EV +S ++ G K T+ + + ESG H Sbjct: 139 DAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTH 198 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP +DIP ++R D R+SG GGQ VNTTDS Sbjct: 199 RLVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIDIPENEMRFDVYRSSGPGGQSVNTTDS 258 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI+V +EKSQ QN+ A++VL+ARL + +R+ + + GS Sbjct: 259 AVRITHIPTGIVVTCQNEKSQLQNKASALRVLQARLLERKRQEEQAKLQGLKTDAAGS-- 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +++R+Y + + D R V G +D I + + + + Sbjct: 317 WGDQMRSYVLHPYQMVKDLRTEQETGTPAAVFDGELDAFIEAGIRWRKQQQLA 369 >gi|315221796|ref|ZP_07863708.1| peptide chain release factor 2 [Streptococcus anginosus F0211] gi|315189029|gb|EFU22732.1| peptide chain release factor 2 [Streptococcus anginosus F0211] Length = 325 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 177/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + ++ D +++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYDNFQQMADLFDESEILLDFLAEDDSVQEELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +E ++ E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELETKMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 HGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I++++ EDI++DT R+ G+GGQ+VN + VR+THIPTGI+ S+ ++ Sbjct: 177 SVEVMPELDDTIEIEVRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKLLQAKLYQMEQEKKAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + +++ V+ G ID I+ L Sbjct: 294 DHRTGFEVAQVDKVMDGDIDGFIDAYLKWR 323 >gi|169832431|ref|YP_001694217.1| peptide chain release factor 2 [Streptococcus pneumoniae Hungary19A-6] gi|172079637|ref|ZP_02709786.2| peptide chain release factor 2 [Streptococcus pneumoniae CDC1873-00] gi|183603431|ref|ZP_02717047.2| peptide chain release factor 2 [Streptococcus pneumoniae CDC3059-06] gi|183603478|ref|ZP_02714985.2| peptide chain release factor 2 [Streptococcus pneumoniae CDC0288-04] gi|225854263|ref|YP_002735775.1| peptide chain release factor 2 [Streptococcus pneumoniae JJA] gi|237650402|ref|ZP_04524654.1| peptide chain release factor 2 [Streptococcus pneumoniae CCRI 1974] gi|237822484|ref|ZP_04598329.1| peptide chain release factor 2 [Streptococcus pneumoniae CCRI 1974M2] gi|303260019|ref|ZP_07345993.1| peptide chain release factor 2 [Streptococcus pneumoniae SP-BS293] gi|303261425|ref|ZP_07347373.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS292] gi|303264092|ref|ZP_07350013.1| peptide chain release factor 2 [Streptococcus pneumoniae BS397] gi|303266295|ref|ZP_07352186.1| peptide chain release factor 2 [Streptococcus pneumoniae BS457] gi|303269536|ref|ZP_07355300.1| peptide chain release factor 2 [Streptococcus pneumoniae BS458] gi|307127694|ref|YP_003879725.1| peptide chain release factor 2 [Streptococcus pneumoniae 670-6B] gi|168994933|gb|ACA35545.1| peptide chain release factor 2 [Streptococcus pneumoniae Hungary19A-6] gi|172041988|gb|EDT50034.1| peptide chain release factor 2 [Streptococcus pneumoniae CDC1873-00] gi|183574752|gb|EDT95280.1| peptide chain release factor 2 [Streptococcus pneumoniae CDC0288-04] gi|183576822|gb|EDT97350.1| peptide chain release factor 2 [Streptococcus pneumoniae CDC3059-06] gi|225722944|gb|ACO18797.1| peptide chain release factor 2 [Streptococcus pneumoniae JJA] gi|302637559|gb|EFL68046.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS292] gi|302638938|gb|EFL69399.1| peptide chain release factor 2 [Streptococcus pneumoniae SP-BS293] gi|302640921|gb|EFL71304.1| peptide chain release factor 2 [Streptococcus pneumoniae BS458] gi|302644225|gb|EFL74481.1| peptide chain release factor 2 [Streptococcus pneumoniae BS457] gi|302646497|gb|EFL76723.1| peptide chain release factor 2 [Streptococcus pneumoniae BS397] gi|306484756|gb|ADM91625.1| peptide chain release factor 2 [Streptococcus pneumoniae 670-6B] Length = 329 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|163816074|ref|ZP_02207444.1| hypothetical protein COPEUT_02254 [Coprococcus eutactus ATCC 27759] gi|158448884|gb|EDP25879.1| hypothetical protein COPEUT_02254 [Coprococcus eutactus ATCC 27759] Length = 370 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 172/345 (49%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + +R A++ M + D +++ E + ++ + + L Sbjct: 26 DIENKTDRIAKLNYEMEQPSFWDDVDRSREVSRELKNLQDLVDNYKKLENDYLDIDTLIL 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + N S I ++ + + ++ LL D DD + +L + +G GG+E Sbjct: 86 MAEEENDSSLIPEIGEQIDIFKKEFEE-----YRINLLFTDEFDDCNAVLTLHSGEGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L+RMY R+A VEVL + D+ G K + I+G + +K E GVHR Sbjct: 141 SCDWASMLYRMYTRWAEKHGMSVEVLDFLEGDEAGIKSVTIQINGPHAYGYLKSEKGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++G+ TS A+ V+P+ + +++I EDIRIDT R+SG+GGQH+N T SA Sbjct: 201 LVRISPFNSAGKRMTSFASCDVIPDIEQDLEIEIRDEDIRIDTYRSSGAGGQHINKTSSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH PTGI+V +E+SQ N+ +AM++L+++LY ++++ S R ++ Sbjct: 261 IRITHFPTGIVVQCQNERSQLMNKNKAMQMLKSKLYLLKKQENLERISDIR-GEVTDNGF 319 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + D R + + VL G +D + L Sbjct: 320 GSQIRSYVLQPYTMVKDKRTSYENSNVSAVLDGDLDGFMTAYLKW 364 >gi|15674713|ref|NP_268887.1| peptide chain release factor 2 [Streptococcus pyogenes M1 GAS] gi|71910343|ref|YP_281893.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS5005] gi|13621834|gb|AAK33608.1| putative peptide chain release factor 2 [Streptococcus pyogenes M1 GAS] gi|71853125|gb|AAZ51148.1| bacterial peptide chain release factor 2 [Streptococcus pyogenes MGAS5005] Length = 337 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E M+E + I + ++ + K + ++ + ++ + Sbjct: 1 MEEEIALLENHMTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDL 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +K+EVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNANGFKIEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS A+V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V+S+ +++Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR Sbjct: 237 TGIVVSSTVDRTQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR N L +++ V+ G I+ I+ L Sbjct: 294 SYVFTPYTMVKDHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 337 >gi|229164123|ref|ZP_04292059.1| Peptide chain release factor 2 [Bacillus cereus R309803] gi|228619359|gb|EEK76249.1| Peptide chain release factor 2 [Bacillus cereus R309803] Length = 326 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 110/333 (33%), Positives = 167/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQVVINEANALKEMVGKFRKLDETFENLEITHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 AEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I ED++IDT RASG+GGQH+NTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEIRSEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|85702878|ref|ZP_01033982.1| peptide chain release factor 2 [Roseovarius sp. 217] gi|85671806|gb|EAQ26663.1| peptide chain release factor 2 [Roseovarius sp. 217] Length = 375 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 174/337 (51%), Gaps = 5/337 (1%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++R E R+ + D + ++ + +D KQE +D +I + Sbjct: 29 RHRLEEFNARVEDPTLWDDPARAQSLMRERQALVDALDTHDSLKQELEDNLGLIELGEME 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 ++ +++ E E+ LL + + LEI AG GG+E+ + L Sbjct: 89 NDTEVVSEAEAAIKALAKVAAAKELEALLDGEADSN--DTFLEINAGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R + VE+ S S ++ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKRGYTVELQSESAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS ++V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITHIPT Sbjct: 207 SAAKRHTSFSSVWVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSS+KSQHQNR AMK L++RLY E R + + G +IR+Y Sbjct: 267 GIVVTSSQKSQHQNRDIAMKALKSRLYQQELDRRNAAINEAHDAK-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +D+ + L + Sbjct: 326 QPYQMVKDLRTGVETSDTKGVLDGDLDEFMAATLAMN 362 >gi|322388283|ref|ZP_08061887.1| peptide chain release factor RF2 [Streptococcus infantis ATCC 700779] gi|321140955|gb|EFX36456.1| peptide chain release factor RF2 [Streptococcus infantis ATCC 700779] Length = 325 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + + + ++ ++ D ++D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMDELQDEVEILLDFLAEDESVKDELVEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LSELDQMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + +++ V+ G +D I+ L Sbjct: 294 DHRTNFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|125558711|gb|EAZ04247.1| hypothetical protein OsI_26391 [Oryza sativa Indica Group] Length = 457 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + ++S D K E A++ + ++ + + K + ++ T++ Sbjct: 105 LDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKSQVEEAETIVKL 164 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D + ++ I AG GG++A + Sbjct: 165 TEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDW 224 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 225 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQ 284 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P E +D IP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 285 SPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRM 344 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 345 VHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 403 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR Y F + + D R + V+ G +D I L + +A+E Sbjct: 404 IRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKY----KLSAAAE 452 >gi|315924849|ref|ZP_07921066.1| peptide chain release factor RF2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315621748|gb|EFV01712.1| peptide chain release factor RF2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 369 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 171/351 (48%), Gaps = 13/351 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R + + + + + + + + K S YD+ K+E D+ + Sbjct: 26 DLPAIDARLSALMTQSEDPAFWNDQKSAQKVLKEQTILKRKRSRYDEVKEELDDVSVMYE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +L + +E + +L D + I+ + G GG+E+ Sbjct: 86 LAEEGEGMDELE-----QMLGAFQEKFEDFKLEMLLSGEYDSNNAIISLHPGAGGTESHD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R +K++ L D G K I G + +K E GVHR+ R Sbjct: 141 WASMLLRMYTRWAEARGYKIKQLDYQPGDIAGIKSATLLIEGINAYGYLKTERGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++SGR HTS A++ V PE + +++I +DIR+DT R+SG+GGQHVN T SA+RI Sbjct: 201 ISPFDSSGRRHTSFASLDVTPEVDDSVEIEINPDDIRVDTYRSSGAGGQHVNKTSSAIRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRS 303 TH+PTG++V +E+SQHQNR AM +L+++L ++ + + QI G Sbjct: 261 THLPTGVVVQCQNERSQHQNREVAMNMLKSKLVEIMAQEQKEKLEDVVGDYSQIAWG--- 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IR+Y F + DHR + + ++ V+ G +D +N L A Sbjct: 318 SQIRSYVFHPYTMVKDHRTGVEVGNIQTVMDGDLDRFMNAELRKEAADASA 368 >gi|256370594|ref|YP_003108419.1| peptide chain release factor 1 [Candidatus Sulcia muelleri SMDSEM] gi|256009386|gb|ACU52746.1| peptide chain release factor 1 [Candidatus Sulcia muelleri SMDSEM] Length = 348 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 141/338 (41%), Positives = 216/338 (63%), Gaps = 11/338 (3%) Query: 16 FAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 F + +S + Y K L++EY + II+ + + K +++ ++ D Sbjct: 17 FNSLSKLISTPEIIKNYKKYILLSKEYKFLYKIINYYNNLKKNKTNIKEIENLLK---KD 73 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 SE+ +LA +E + E +++ N+I LL K+ + ++E+RAGTGG EA +FV D+ Sbjct: 74 SELLELAFLEKKNLFLEKKKILNKIENLLKKKNYNK---ILMELRAGTGGDEACIFVEDI 130 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 FRMY Y WK ++L+ GYKEI+ I G+ V+ ++KFESGVHRVQR+P TE Sbjct: 131 FRMYTLYFKELGWKYDILNMQQGSIKGYKEIILEIEGKNVYDKLKFESGVHRVQRIPYTE 190 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + GR+HTSA TVAV+P + ++ I L D++ +T +ASG+GGQHVN T+SA+R+THIPT Sbjct: 191 SQGRLHTSAITVAVIPENYYKNNIKIVLSDLKRETFKASGAGGQHVNKTESAIRLTHIPT 250 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI+ E+SQH+N +A+KVLRAR+Y+ E K+ S RK I +G+RSE+IRTYN Sbjct: 251 GIVAECQEERSQHKNYEKAIKVLRARIYNSEFKKKNELLSKKRKSLISTGERSEKIRTYN 310 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + QGR+TDHRIN ++Y L++ + G ++++I L + Sbjct: 311 YPQGRVTDHRINKSIYYLDHFMNGKLNEMITALQILEK 348 >gi|228942321|ref|ZP_04104860.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975250|ref|ZP_04135808.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228981888|ref|ZP_04142183.1| Peptide chain release factor 2 [Bacillus thuringiensis Bt407] gi|228778000|gb|EEM26272.1| Peptide chain release factor 2 [Bacillus thuringiensis Bt407] gi|228784529|gb|EEM32550.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817365|gb|EEM63451.1| Peptide chain release factor 2 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 326 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 166/333 (49%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQVVINEANALKDMVGSFRQLDETFENLEVTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|322385191|ref|ZP_08058838.1| peptide chain release factor RF2 [Streptococcus cristatus ATCC 51100] gi|321270815|gb|EFX53728.1| peptide chain release factor RF2 [Streptococcus cristatus ATCC 51100] Length = 325 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D +++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTELFDESEILLDFLAEDDSVQEELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LTELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|254477534|ref|ZP_05090920.1| peptide chain release factor 2 [Ruegeria sp. R11] gi|214031777|gb|EEB72612.1| peptide chain release factor 2 [Ruegeria sp. R11] Length = 374 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 120/339 (35%), Positives = 174/339 (51%), Gaps = 5/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D ++ I Y KQE D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDADAAQALMRERQMLVDAIDTYKSIKQELADNIELIELGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + + + E E+ LL + + LEI AG GG+E+ + L R Sbjct: 91 NEVVKDAEEALVALKEKAAEKELEALLDGEADSN--DTFLEINAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S D+ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P I++D+ DIR+DT R+SG+GGQHVNTTDSAVRITHIPTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIEIDVNPADIRVDTYRSSGAGGQHVNTTDSAVRITHIPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY E R + +A + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQQELDRRNADINAAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D + L + A Sbjct: 328 YQMVKDLRTSHETSDTKGVLDGDLDGFMAATLALNVAGK 366 >gi|126652452|ref|ZP_01724624.1| peptide chain release factor 2 [Bacillus sp. B14905] gi|126590723|gb|EAZ84838.1| peptide chain release factor 2 [Bacillus sp. B14905] Length = 328 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 169/334 (50%), Gaps = 16/334 (4%) Query: 22 RMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M E D + I+++ ++ + ++ E + Sbjct: 1 MMLEPGFWDDQQGAQVIINEGNGLKAIVNEYKELEEIHENLDMTLELLR-----EEPDEE 55 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q E+ E ++ + LL D + ILE+ G GG+E+ + L RMY R Sbjct: 56 LQEELGKELVEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A R +KVE + D+ G K + +I G F ++ E GVHR+ R+ ++SGR H Sbjct: 116 WAEKRGFKVETMDYLPGDEAGIKSVTISIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS + V+PE E ++DI ED++IDT RA+G+GGQH+NTTDSAVRITHIPTG +V Sbjct: 176 TSFVSCDVMPEFDENIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTVVQC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR +AM +L+ +LY +E ++ + R Q IG G +IR+Y F Sbjct: 236 QAERSQIKNREKAMAMLKGKLYQLELEKQQAQLDEIRGEQKDIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + V+ G +D IN L + Sbjct: 293 SMVKDHRTNEETGNVGAVMDGDVDPFINAYLRSR 326 >gi|283479628|emb|CAY75544.1| Peptide chain release factor 1 (RF-1) [Erwinia pyrifoliae DSM 12163] Length = 310 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 167/316 (52%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +A+ ++ + Q ++ L + + + + +K Sbjct: 1 MGKERSALEAVVETLDQMTQGLEDVSGLLELAVEAEDEETFNEAVNELDGLDKKLGE--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + + D C ++I+AG+GG+EA + L RMY R+A + +K E++ SD Sbjct: 58 --LEFRRMFSGEYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 + G K I G F ++ E+GVHR+ R ++ GR HTS ++V + PE I Sbjct: 116 GEVAGTKSATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQ 235 Query: 273 LRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY+ E ++ ++ + + K IG G +IR+Y RI D R ++ + Sbjct: 236 LRAKLYEYEMQKKNADKQTAEDNKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDRFIEASLKA 308 >gi|255264706|ref|ZP_05344048.1| peptide chain release factor 2 [Thalassiobium sp. R2A62] gi|255107041|gb|EET49715.1| peptide chain release factor 2 [Thalassiobium sp. R2A62] Length = 375 Score = 218 bits (555), Expect = 1e-54, Method: Composition-based stats. Identities = 116/341 (34%), Positives = 172/341 (50%), Gaps = 9/341 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E R+ + D + ++ I Y+ QE D +I + D Sbjct: 31 RLEEFNARVEDPTLWDDPEAAQKLMRDRQALVDAIKTYETISQELADNVELIELGEMEDD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 +++ A+ + ++ + E L D LEI AG GG+E+ + L Sbjct: 91 ADVVTEAETALATLKDAAAQKEL----EALLDGEADANDTFLEINAGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A +KVE+ S S D+ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKAGYKVELQSESAGDEAGIKSASYKISGHNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFTSVKVYPVVDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHAPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQIELDKRSALVNEAHENA-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D ++ L + A Sbjct: 326 QPYQMVKDLRTSFETSDTKGVLDGDLDGLMAATLAQNVAGK 366 >gi|332974657|gb|EGK11574.1| peptide chain release factor RF2 [Kingella kingae ATCC 23330] Length = 367 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 174/342 (50%), Gaps = 15/342 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 K+R E+ + + + +E + ++ + + ++L ++ + Sbjct: 32 KKDRLEEVVGLSEDPDLWNDPKRAQDIGKERKLLEGVVLTLDKITNGIDDNRELIDMVVE 91 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++A E+ + ++ + + D +C ++I AG GG+EA + Sbjct: 92 EGD-----ADGFAAIIADVAELEKQMADLEFKRMFNQPADPNNCFIDITAGAGGTEAEDW 146 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 G L RMY RYA + +KVEV+ D + G I G + ++ E+GVHR+ R Sbjct: 147 AGMLLRMYTRYAERKGFKVEVIEQDDGEIAGINNATLRIEGEYAYGLLRTETGVHRLVRY 206 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS ++V V PE +V+I D+R DT RASG+GGQH+N TDSAVRIT Sbjct: 207 SPFDSNNKRHTSFSSVFVYPEVDDSFEVEINPADLRTDTYRASGAGGQHINKTDSAVRIT 266 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTGI+V + S +SQH+NR M++LR++L+++E ++ E+ A K +G G Sbjct: 267 HIPTGIVVQSQSSRSQHENRRIVMEMLRSKLFELEMRKRNEEKQALEEGKSDVGWG---S 323 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + + VL G +D I L Sbjct: 324 QIRSYVLDSSRIKDLRTSYEVGNTKAVLDGDLDGFIEASLKQ 365 >gi|324990937|gb|EGC22872.1| peptide chain release factor RF2 [Streptococcus sanguinis SK353] Length = 325 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D ++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTELFDESEILLDFLAEDESVQGELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|322376937|ref|ZP_08051430.1| peptide chain release factor 2 [Streptococcus sp. M334] gi|321282744|gb|EFX59751.1| peptide chain release factor 2 [Streptococcus sp. M334] Length = 329 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D +++ Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVQEEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VTQ----LSELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|319946614|ref|ZP_08020848.1| peptide chain release factor RF2 [Streptococcus australis ATCC 700641] gi|319746662|gb|EFV98921.1| peptide chain release factor RF2 [Streptococcus australis ATCC 700641] Length = 325 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 176/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + ++ + D + E Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTDLFDESEILLEFLSED----ESVHEE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E+ ++ LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 57 LEEKLIELDKMMTSYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 HGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAAEVDSLKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G ID I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDIDGFIDAYLKWR 323 >gi|291528563|emb|CBK94149.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium rectale M104/1] Length = 330 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 173/327 (52%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D K + + + ++ Y + K++ +D+ T+I E + E Sbjct: 1 MEAPDFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEM--GYEENDESLIPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + I L D + IL + AG GG+E+ + LFRMY ++A Sbjct: 59 IQQMLDDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL S D D+ G K I ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFTLEVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ E D+++ +DIRIDT R+SG+GGQH+N T SA+RITH P+GI+V +E+ Sbjct: 179 SCDVMPDIEEDLDIEVKDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+A+LY ++++ A + + R ++ +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKAKLYLLKQEENAAKEAGIR-GEVKEIGWGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ + VL G ID IN L Sbjct: 298 RTDVETGNADAVLDGNIDIFINGYLKW 324 >gi|117924338|ref|YP_864955.1| peptide chain release factor 2 [Magnetococcus sp. MC-1] gi|117608094|gb|ABK43549.1| bacterial peptide chain release factor 2 (bRF-2) [Magnetococcus sp. MC-1] Length = 379 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 113/343 (32%), Positives = 172/343 (50%), Gaps = 16/343 (4%) Query: 13 KNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R +E+E + + + E + I + + + + +DL + + Sbjct: 37 KERLSELESLAQDPNLWGDSERARTVMTEKNRLEKTIGEWDALNSESTDARDLLEMAQEE 96 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 DS + +V AI K + LE D +C +EI G GG+E+ + Sbjct: 97 -GDSGMIAEVTAQVAAILKRLEGLELARM----LSGEADANNCFIEIHPGAGGTESQDWA 151 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY RY +K E + D+ G K + + G + +K ESGVHR+ R+ Sbjct: 152 SILLRMYLRYCEKSGFKTEEVDYLAGDEAGIKSVTIKVEGDYAYGYLKVESGVHRLVRIS 211 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++S R HTS +V V PE + +++I +D+R+DT RASG+GGQHVN TDSA+RITH Sbjct: 212 PFDSSARRHTSFTSVNVYPEIDDSIEIEILDKDLRVDTFRASGAGGQHVNKTDSAIRITH 271 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSER 305 PTGI+V S +SQH+NR AMK+LRARL+ +E + A + A+ K I G + Sbjct: 272 QPTGIVVQCQSGRSQHRNRDEAMKMLRARLFQLEMDKRAEAAQAVADAKSDIAWG---HQ 328 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + R + D R + + VL G +D I L+ Sbjct: 329 IRSYVLAPYRLVKDLRTSYETGNTDAVLDGELDGFIKAALSQR 371 >gi|312862769|ref|ZP_07723009.1| peptide chain release factor 2 [Streptococcus vestibularis F0396] gi|311101629|gb|EFQ59832.1| peptide chain release factor 2 [Streptococcus vestibularis F0396] Length = 337 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 186/344 (54%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E RM+E + I + ++ + K ++ ++ + + Sbjct: 1 MEEDIALLENRMTEPDFWNDNIAAQKTSQELNELKMKYETFNNMQELSDETELYLEMLEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D I++ + + ++K + E LL + D + ILEI G+GG+EA + Sbjct: 61 DDSIQEELEETLEKLDKIMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+RY + +KVE L D+ G K + G + +K E GVHR+ R+ Sbjct: 117 LLRMYQRYGNAKGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ R HTS +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIP Sbjct: 177 DSAKRRHTSFTSVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIP 236 Query: 251 TGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 TGI+V S+ +++Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR Sbjct: 237 TGIVVASTVDRTQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F+ + DHR + +++ V+ G I+ I+ L + Sbjct: 294 SYVFTPYTMVKDHRTGYEVAQVDKVMDGDIEGFIDACLKWRMEE 337 >gi|298528152|ref|ZP_07015556.1| hypothetical protein Dthio_PD3135 [Desulfonatronospira thiodismutans ASO3-1] gi|298511804|gb|EFI35706.1| hypothetical protein Dthio_PD3135 [Desulfonatronospira thiodismutans ASO3-1] Length = 368 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 123/345 (35%), Positives = 191/345 (55%), Gaps = 10/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + K R EIE +S + D+ KLT S + +S Y+Q ++++ + Sbjct: 27 DLESQKQRLEEIEHELSRPGAWDSPEKLTPILKEKSGLEESVSKYEQLHSLQEEVREWLE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++D ++ Q ++E R+LE + L DD+ I+ I G GG+EA Sbjct: 87 FADNDQSG-EVLQALEDSLETLSRQLEK-VELEALLSGKDDNNPAIVSIHPGAGGTEAQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L RMY R+A + +K++ L D+ G K + ++G + +K E G+HR+ R Sbjct: 145 WVEMLLRMYTRWAESKGFKLDYLDYLPGDEAGVKSVTLQVTGEYAYGLLKSERGIHRLIR 204 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +ASGR HTS A+V V P+ + +I++++ ED+R+D +ASG GGQHVN T SA+RI Sbjct: 205 ISPFDASGRRHTSFASVDVYPQVSDDINIEVKEEDMRVDVFKASGPGGQHVNKTSSAIRI 264 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 TH+PTGI+V SE+SQ +NR A+K+L+A+LYD E K++ +ER K I G Sbjct: 265 THMPTGIVVQCQSERSQRRNRDAALKILKAKLYDEEMKKLEDERQEKYAAKDSIAWG--- 321 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IRTY R + DHR N +Y ++ VL G ID +I L Sbjct: 322 SQIRTYTLHSYRLVKDHRNNTEIYDVDSVLDGNIDTLIRNYLLYR 366 >gi|108798578|ref|YP_638775.1| peptide chain release factor 2 [Mycobacterium sp. MCS] gi|119867678|ref|YP_937630.1| peptide chain release factor 2 [Mycobacterium sp. KMS] gi|123070429|sp|Q1BBL5|RF2_MYCSS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|166225110|sp|A1UDD2|RF2_MYCSK RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|108768997|gb|ABG07719.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp. MCS] gi|119693767|gb|ABL90840.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp. KMS] Length = 371 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 168/347 (48%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + + +S +++ ++ +Q +DL + Sbjct: 24 DVDGLRDRIQKLEQEASDPNLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYE 83 Query: 68 DH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E A ++R + L D++ ++ IR+G GG +AA Sbjct: 84 MAAEEEGQDAENAGAEADAELAKLRVDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +D+P D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFADVEVLPVVETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AM+VL+A+L +++ E A K GS Sbjct: 264 LTHIPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLARKKQEERAELDAL-KGDGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + + Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPSAVLDGDIDGFLEAGIRWRNRR 368 >gi|323351855|ref|ZP_08087506.1| peptide chain release factor RF2 [Streptococcus sanguinis VMC66] gi|322121912|gb|EFX93644.1| peptide chain release factor RF2 [Streptococcus sanguinis VMC66] gi|324993198|gb|EGC25118.1| peptide chain release factor RF2 [Streptococcus sanguinis SK405] gi|324995500|gb|EGC27412.1| peptide chain release factor RF2 [Streptococcus sanguinis SK678] gi|325687821|gb|EGD29841.1| peptide chain release factor RF2 [Streptococcus sanguinis SK72] gi|325689974|gb|EGD31978.1| peptide chain release factor RF2 [Streptococcus sanguinis SK115] gi|325696780|gb|EGD38668.1| peptide chain release factor RF2 [Streptococcus sanguinis SK160] gi|327461467|gb|EGF07798.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1] gi|327469623|gb|EGF15092.1| peptide chain release factor RF2 [Streptococcus sanguinis SK330] gi|327473772|gb|EGF19190.1| peptide chain release factor RF2 [Streptococcus sanguinis SK408] gi|327489322|gb|EGF21115.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1058] gi|332359597|gb|EGJ37415.1| peptide chain release factor RF2 [Streptococcus sanguinis SK49] gi|332361549|gb|EGJ39353.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1056] gi|332362808|gb|EGJ40602.1| peptide chain release factor RF2 [Streptococcus sanguinis SK355] gi|332366326|gb|EGJ44078.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1059] Length = 325 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D ++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTELFDESEILLDFLAEDESVQGELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|256375089|ref|YP_003098749.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827] gi|255919392|gb|ACU34903.1| peptide chain release factor 2 [Actinosynnema mirum DSM 43827] Length = 367 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 161/349 (46%), Gaps = 8/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ + AE+E + + D K + +S ++ + DL + Sbjct: 24 DLDALRAQVAELEEQAARPDLWDDQEKAQRVTSQLSHKQGELRRVTALRGRLDDLGVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A+ + + + + L D + ++ +RA GG +AA Sbjct: 84 LAEDEGDEGSAAEADTERAKLREEI--SSLEVRTLLSGEYDARDALVTVRAEAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + V+V +S ++ G K ++ + + E G HR+ R Sbjct: 142 FAEMLLRMYSRWAERHNYAVDVFDTSYAEEAGIKSATFRVTAPYAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P V+I +++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAGVEVVPVVEQTDHVEIDEKELRVDVYRSSGPGGQGVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QN+ AM VL+A+L + +R+ + A + G+ + Sbjct: 262 THIPTGIVVSCQNERSQLQNKATAMAVLQAKLLERQRQEEQAKMDALKDSGSSWGN---Q 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +R+Y + + D R + VL G IDD + + + + Sbjct: 319 MRSYVLHPYQMVKDLRTEHEVGNPSAVLDGEIDDFLEAGIRWRKQRQTA 367 >gi|221639399|ref|YP_002525661.1| peptide chain release factor 2 [Rhodobacter sphaeroides KD131] gi|221160180|gb|ACM01160.1| Bacterial peptide chain release factor 2 [Rhodobacter sphaeroides KD131] Length = 375 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 177/349 (50%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +R E + + + + KL E + +S + D ++ +L Sbjct: 24 DLETAPHRLEEFDAMIEDGNLWNDPARAQKLMRERQQLMDQLSTYKLIDTGLRDNVELIE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + G+ D EI A+ + A+ + R E L D LEI AG GG+E Sbjct: 84 L-GEAEGDEEIVTEAEAAIRALVETARAKEL----EALLDGEADGNDTFLEINAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR Sbjct: 139 SCDWASMLARMYVRWAERKGYKVELQSESAGEEAGIKSAAYKISGPNAYGWLKSESGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS ++V V P I+++IP DIRIDT R+SG+GGQHVNTTDSA Sbjct: 199 LVRISPYDSAARRHTSFSSVWVYPVVDDNIEIEIPANDIRIDTYRSSGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PT I+VTSS KSQHQNR AM L+ARLY +E + +A + + G Sbjct: 259 VRITHLPTNIVVTSSMKSQHQNREAAMNALKARLYQLELDKRNAAINAQHEAK-GEAGWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + D R + + VL G +D + L A Sbjct: 318 NQIRSYVLQPYQMVKDLRTGVETSDTQGVLDGDLDRFMQATLAQDVAGK 366 >gi|146277893|ref|YP_001168052.1| peptide chain release factor 2 [Rhodobacter sphaeroides ATCC 17025] gi|145556134|gb|ABP70747.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodobacter sphaeroides ATCC 17025] Length = 375 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 118/349 (33%), Positives = 177/349 (50%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +R E + + + + KL E + +S + D ++ +L Sbjct: 24 DLETAPHRLEEFDAMIEDGNLWNDPARAQKLMRERQQLMDQLSTYRLIDTGLRDNVELIE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + G+ D+EI A+ + + + R E L D LEI AG GG+E Sbjct: 84 L-GEAEGDTEIVTEAEAAIRTLVETARAKEL----EALLDGEADGNDTFLEINAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR Sbjct: 139 SCDWASMLARMYVRWAERKGYKVELQSESAGEEAGIKSAAYKISGPNAYGWLKSESGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS ++V V P I+++IP +IRIDT R+SG+GGQHVNTTDSA Sbjct: 199 LVRISPYDSAARRHTSFSSVWVYPVVDDNIEIEIPANEIRIDTYRSSGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PT I+VTSS KSQHQNR AM L+ARLY +E + +A + + G Sbjct: 259 VRITHLPTNIVVTSSMKSQHQNREAAMNALKARLYQMELDKRNAAINAQHEAK-GEAGWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + D R + + VL G +D + L A Sbjct: 318 NQIRSYVLQPYQMVKDLRTGVETSDTQGVLDGDLDRFMQATLAQDVAGK 366 >gi|218514632|ref|ZP_03511472.1| peptide chain release factor 1 [Rhizobium etli 8C-3] Length = 236 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 153/223 (68%), Positives = 190/223 (85%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 + WKVEVLS+S+ + GGYKEI+ATI+GRGVF+++KFESGVHRVQRVP TEA Sbjct: 12 CMSASQPKKGWKVEVLSASEGEAGGYKEIIATITGRGVFAKLKFESGVHRVQRVPETEAG 71 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 GR+HTSAATVAVLPEA EID++I EDIRIDTMR+SG+GGQHVNTTDSAVRITH+P+GI+ Sbjct: 72 GRIHTSAATVAVLPEAEEIDIEIRPEDIRIDTMRSSGAGGQHVNTTDSAVRITHLPSGIV 131 Query: 255 VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 VTSSEKSQHQNR +AM+VLR+RLYD ER+R +ERSA+RK Q+GSGDRSERIRTYNF QG Sbjct: 132 VTSSEKSQHQNRAKAMQVLRSRLYDAERQRADSERSADRKSQVGSGDRSERIRTYNFPQG 191 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+TDHRINLTLYKL+ +++G I+++++ L+ +QA + E Sbjct: 192 RVTDHRINLTLYKLDRMMEGEIEEVVDALMADYQASQLAQLGE 234 >gi|21242619|ref|NP_642201.1| peptide chain release factor 2 [Xanthomonas axonopodis pv. citri str. 306] gi|21108083|gb|AAM36737.1| peptide chain release factor 2 [Xanthomonas axonopodis pv. citri str. 306] Length = 329 Score = 218 bits (554), Expect = 1e-54, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 160/324 (49%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L E + + + I+ + DL + + D + ++ Sbjct: 3 NDAERAQALGRERSMLEKTVIGIADVLSGLADAGDLLELA-ESEQDEDTAVAVIADLDNY 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + +LE + D + ++I+AG GG+EA + L RMY R+A R WK Sbjct: 62 QAHVEKLEFQRM----FSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K I G + +K E GVHR+ R ++ R HTS +V V Sbjct: 118 TELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQ Sbjct: 178 SPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+L A+LY++E ++ E+ A K IG G +IR Y Q RI D R Sbjct: 238 NRDNAMKMLAAKLYELEVQKRNAEKDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D+ + L A Sbjct: 295 IERSDTQKVLDGDLDEFVEASLKA 318 >gi|77463535|ref|YP_353039.1| peptide chain release factor 2 [Rhodobacter sphaeroides 2.4.1] gi|332558415|ref|ZP_08412737.1| peptide chain release factor 2 [Rhodobacter sphaeroides WS8N] gi|77387953|gb|ABA79138.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodobacter sphaeroides 2.4.1] gi|332276127|gb|EGJ21442.1| peptide chain release factor 2 [Rhodobacter sphaeroides WS8N] Length = 375 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 120/349 (34%), Positives = 177/349 (50%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +R E + + + + KL E + +S + D ++ +L Sbjct: 24 DLETAPHRLEEFDAMIEDGNLWNDPARAQKLMRERQQLMDQLSTYRLIDTGLRDNVELIE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + G+ D EI A+ + A+ + R E L D LEI AG GG+E Sbjct: 84 L-GEAEGDEEIVTEAEASIRALVETARAKEL----EALLDGEADGNDTFLEINAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR Sbjct: 139 SCDWASMLARMYVRWAERKGYKVELQSESAGEEAGIKSAAYKISGPNAYGWLKSESGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS ++V V P I+++IP DIRIDT R+SG+GGQHVNTTDSA Sbjct: 199 LVRISPYDSAARRHTSFSSVWVYPVVDDNIEIEIPANDIRIDTYRSSGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PT I+VTSS KSQHQNR AM L+ARLY +E + +A + + G Sbjct: 259 VRITHLPTNIVVTSSMKSQHQNREAAMNALKARLYQLELDKRNAAINAQHEAK-GEAGWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + D R + + VL G +D + L A Sbjct: 318 NQIRSYVLQPYQMVKDLRTGVETSDTQGVLDGDLDRFMQATLAQDVAGK 366 >gi|126462391|ref|YP_001043505.1| peptide chain release factor 2 [Rhodobacter sphaeroides ATCC 17029] gi|126104055|gb|ABN76733.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodobacter sphaeroides ATCC 17029] Length = 375 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 119/349 (34%), Positives = 176/349 (50%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +R E + + + + KL E + +S + D ++ +L Sbjct: 24 DLETAPHRLEEFDAMIEDGNLWNDPARAQKLMRERQQLMDQLSTYRLIDTGLRDNVELIE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + G+ D EI A+ + A+ + E L D LEI AG GG+E Sbjct: 84 L-GEAEGDEEIVTEAEASIRALVETAGAKEL----EALLDGEADGNDTFLEINAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR Sbjct: 139 SCDWASMLARMYVRWAERKGYKVELQSESAGEEAGIKSAAYKISGPNAYGWLKSESGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS ++V V P I+++IP DIRIDT R+SG+GGQHVNTTDSA Sbjct: 199 LVRISPYDSAARRHTSFSSVWVYPVVDDNIEIEIPANDIRIDTYRSSGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 VRITH+PT I+VTSS KSQHQNR AM L+ARLY +E + +A + + G Sbjct: 259 VRITHLPTNIVVTSSMKSQHQNREAAMNALKARLYQLELDKRNAAINAQHEAK-GEAGWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + D R + + VL G +D + L A Sbjct: 318 NQIRSYVLQPYQMVKDLRTGVETSDTQGVLDGDLDRFMQATLAQDVAGK 366 >gi|229175857|ref|ZP_04303355.1| Peptide chain release factor 2 [Bacillus cereus MM3] gi|228607590|gb|EEK64914.1| Peptide chain release factor 2 [Bacillus cereus MM3] Length = 325 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 165/329 (50%), Gaps = 16/329 (4%) Query: 27 PSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 D + ++ K D+ + + H ++ + + +L Sbjct: 4 GFWDDQQGAQAVINEANALKEMVGKFRQLDETFENLEITHELLKEEYDEDLHEELESEVK 63 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 I++ LL D D + ILE+ G GG+E+ + L RMY R+A R Sbjct: 64 GLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKR 118 Query: 144 KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HTS + Sbjct: 119 GFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS 178 Query: 204 VAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKS 261 V+PE + +++I ED+++DT RASG+GGQH+NTTDSAVRITH PT +V SE+S Sbjct: 179 CEVVPEFNDEVEIEIRSEDLKVDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQSERS 238 Query: 262 QHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITD 318 Q +NR AMK+L+A+LY + + E R Q IG G +IR+Y F + D Sbjct: 239 QIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSLVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAH 347 HR N + ++ V+ G ID I+ L + Sbjct: 296 HRTNTEVGNVQAVMDGEIDPFIDAYLRSR 324 >gi|169335448|ref|ZP_02862641.1| hypothetical protein ANASTE_01862 [Anaerofustis stercorihominis DSM 17244] gi|169258186|gb|EDS72152.1| hypothetical protein ANASTE_01862 [Anaerofustis stercorihominis DSM 17244] Length = 364 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 105/341 (30%), Positives = 171/341 (50%), Gaps = 6/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I LK+ + E M++ + K + + + S+I+ Y + ++ D+ ++ Sbjct: 27 IKSLKDELVKKETLMNDESFWNENDKANKILKEVKSLKSQINSYSSLEYKKDDISVLVEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + +E E I+ LL + + + IL I G GG+E+ + Sbjct: 87 LQEDFSQNEADSAMEELLELEKELKVFTIDTLLSGEYDSN--NAILSIHPGAGGTESQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RM+ R+A RK+K+++L D G K + ISG + +K E GVHR+ R+ Sbjct: 145 AEMLLRMFIRFAEKRKFKIKILEQLPGDIAGIKSVTLLISGDNAYGYLKGEKGVHRLVRI 204 Query: 189 PATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS A+V V +I+++I D++IDT RA G+GGQHVN TDSAVRIT Sbjct: 205 SPFDSNSRRHTSFASVDVEPEIKEDINLEINPSDLKIDTYRAGGAGGQHVNKTDSAVRIT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PT I+V +E+SQ QN+ AMK+L+ +LY + + + K G +I Sbjct: 265 HLPTKIVVSCQNERSQFQNKETAMKILKGKLYKILMEEHKEKIDEI-KGDYGQIAWGNQI 323 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y F + DHR ++ V+ G I+ I+ L Sbjct: 324 RSYVFHPYSMVKDHRTKTETSNVQSVMDGDINIFIDAFLKM 364 >gi|15602055|ref|NP_245127.1| peptide chain release factor 2 [Pasteurella multocida subsp. multocida str. Pm70] gi|12720411|gb|AAK02274.1| PrfB [Pasteurella multocida subsp. multocida str. Pm70] Length = 320 Score = 218 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E A+ +++ I DQ ++ + L + + ++ + Sbjct: 3 NEPEKAQALGKERVALEGVVNTIHTLDQGLEDVEGLLELAIEAEDEATFHEAVAELEELE 62 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 ++ + + + + D C ++++AG+GG+EA + L RMY R+A + +K Sbjct: 63 QQLAK-----LEFRRMFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ SD D G K +SG F ++ E+G+HR+ R +++ R HTS + V Sbjct: 118 TELMEVSDGDVAGIKSATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFV 177 Query: 207 LPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + D+RID RASG+GGQHVN T+SAVRITHIP+GI+V +++SQH+ Sbjct: 178 YPEIDDDIDIDINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ + MK L+A+LY++E ++ ++ + K IG G +IR+Y RI D R Sbjct: 238 NKDQCMKQLKAKLYEMELQKKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D I L A Sbjct: 295 VENRNTQAVLDGDLDRFIEASLKA 318 >gi|327459899|gb|EGF06239.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1057] Length = 325 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D ++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQDLNELKQTYENFHQMTELFDESEILLDFLAEDESVQGELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|125717712|ref|YP_001034845.1| peptide chain release factor 2 [Streptococcus sanguinis SK36] gi|125497629|gb|ABN44295.1| Peptide chain release factor 2, putative [Streptococcus sanguinis SK36] Length = 325 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 179/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D +L Q E Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTELFDESEILLDFLAED----ELVQGE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E+ ++ LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 57 LEEKLAELEKMMTSYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|254776429|ref|ZP_05217945.1| peptide chain release factor 2 [Mycobacterium avium subsp. avium ATCC 25291] Length = 370 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 163/346 (47%), Gaps = 5/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E S+ D + + +S ++ ++ + DL + Sbjct: 24 DVDGLRARIEKLEHEASDPQLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + E A E A K +R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEGEGAAEALAEADAELKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAAD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ R Sbjct: 144 WAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 204 ISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRL 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS + Sbjct: 264 THIPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRSEERAELDAL-KGEGGS-SWGNQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + K Sbjct: 322 MRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 367 >gi|205375066|ref|ZP_03227857.1| hypothetical protein Bcoam_18782 [Bacillus coahuilensis m4-4] Length = 327 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 170/330 (51%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + + K + + + Y + ++L + + LA++E Sbjct: 1 MVDPDFWNDQQKAQGLINEANGLKDMVGQYHSMVEAHENLEVTFELVKEEGDEELLAELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + N LL + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 PELNDLTKQL--NNYELQLLLSEEYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + +I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 KGFKVETLDYLPGDEAGIKSVTLSIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PT +V SE+ Sbjct: 179 SCEVMPEFNDEIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTNTVVTCQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR AMK+L+++LY ++ + + + R Q IG G +IR+Y F + Sbjct: 239 SQIKNREAAMKMLKSKLYQLKIEEQEAQLAEIRGEQKDIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + V+ G +D I+ L + Sbjct: 296 DHRTNTEVGNTNSVMDGDLDVFIDAYLRSR 325 >gi|238923127|ref|YP_002936640.1| peptide chain release factor 2 in translation [Eubacterium rectale ATCC 33656] gi|238874799|gb|ACR74506.1| peptide chain release factor 2 in translation [Eubacterium rectale ATCC 33656] Length = 330 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D K + + + ++ Y + K++ +D+ T+I E + E Sbjct: 1 MEAPDFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEM--GYEENDESLIPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + I L D + IL + AG GG+E+ + LFRMY ++A Sbjct: 59 IQQMLDDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWASMLFRMYSKWADK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL S D D+ G K I ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFTLEVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ E D+++ EDIRIDT R+SG+GGQH+N T SA+RITH P+GI+V +E+ Sbjct: 179 SCDVMPDIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+A+LY ++++ A + + R ++ +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKAKLYLLKQEENAAKEAGIR-GEVKEIGWGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ + VL G ID IN L Sbjct: 298 RTDVETGNADAVLDGNIDIFINGYLKW 324 >gi|158321505|ref|YP_001514012.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs] gi|158141704|gb|ABW20016.1| peptide chain release factor 2 [Alkaliphilus oremlandii OhILAs] Length = 340 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 117/334 (35%), Positives = 171/334 (51%), Gaps = 11/334 (3%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E+E +MSE + I Y+Q + +DL +I E Sbjct: 6 EELEYKMSEEDFWNDPENAQSVLKKAKGYRDTIEEYNQLHVDHEDLEMMISFIEDGDESF 65 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 ++ + + EI L K D + I+ I AGTGG +A + L RMY Sbjct: 66 QKDLLKG---LEALENRVREIKIATLLKGEYDKNNAIISIHAGTGGLDAQDWAKMLLRMY 122 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + + V+ L + + G K + I G + +K E GVHR+ R+ ++SG+ Sbjct: 123 TRWAEDKGYGVKTLDILTDTEAGIKSVTLLIEGMNAYGYLKAEKGVHRLVRISPFDSSGK 182 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A+V V+PE + D+ I D+RIDT RASGSGGQHVN TDSAVRITHIPTGI+V Sbjct: 183 RHTSFASVDVMPEIDDSVDIQINPNDLRIDTYRASGSGGQHVNKTDSAVRITHIPTGIVV 242 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFS 312 +E+SQH NR AMK+L ++L +V+ + + QI G +IR+Y F+ Sbjct: 243 QCQNERSQHSNRETAMKMLISKLIEVKETEQKEKIEDLQGEYNQIAWG---SQIRSYVFN 299 Query: 313 QG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N+ + ++ V+ G ID+ IN L Sbjct: 300 PYNLVKDHRTNVEMGNIQAVMDGEIDEFINGYLK 333 >gi|304437837|ref|ZP_07397786.1| peptide chain release factor RF2 [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369194|gb|EFM22870.1| peptide chain release factor RF2 [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 368 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 173/350 (49%), Gaps = 12/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEE 59 +I + + AE+E +M E D KL +E AA+ + K ++ Sbjct: 19 MRISLEIPAKEEKIAELEYKMGEPSFWDDAAAAQKLNQELAALKGGVDTYKGLMAKYEDA 78 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + L+ + G D+ + D + E+ I + + L +L D IL + AG Sbjct: 79 ETLYEM-GIEEGDASMEDDIRAELDLIAEGLETL----QLEVLLSGDYDANDAILTLHAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EA + L RMY R+A + VE D+ G K I G + +K E Sbjct: 134 AGGTEAQDWTQMLLRMYGRWAERHGFTVETADLQPGDEAGVKSATLFIKGHNAYGFLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++ R HTS + V+PE + ++D+R+D RASG+GGQH+N Sbjct: 194 KGVHRLVRISPFDSQARRHTSFSACDVMPEIDDAVEVPINMDDVRVDYYRASGAGGQHIN 253 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T SAVR+TH PTGI+V +E+SQ QN+ + MK+LRA+L+++E+++ E + +Q Sbjct: 254 KTSSAVRMTHEPTGIVVQCQNERSQLQNKEQCMKMLRAKLFELEQEKKEEEIAKLEGVQQ 313 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + D R N ++ V+ G +D I L A Sbjct: 314 K-IEWGSQIRSYVFQPYTMVKDVRTNAETGNVQAVMDGELDPFIRAYLNA 362 >gi|255283235|ref|ZP_05347790.1| peptide chain release factor 2 [Bryantella formatexigens DSM 14469] gi|255266308|gb|EET59513.1| peptide chain release factor 2 [Bryantella formatexigens DSM 14469] Length = 334 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 170/330 (51%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D + + A+ + ++ ++ +E + L + + N S I ++ Sbjct: 1 MEEPDFWDDPESSQESMKTLKALKDDVETYAVLKEQYEEIETLIEMAYEENDASLILEIQ 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + I I L D I+ + AG GG+E+ + G L+RMY R+ Sbjct: 61 ETLDSFIATF-----ENIRIRTLLSGEYDKNDAIVTLHAGAGGTESCDWAGMLYRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + + VEVL D ++ G K + + G + +K E GVHR+ R+ A+G+ T Sbjct: 116 ADKKGYTVEVLDYLDGEEAGIKSVTFEVRGENAYGYLKSEKGVHRLVRISPFNAAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+P+ E D++I ED+RIDT R+SG+GGQH+N T SAVRITH+PT I+V Sbjct: 176 SFVSCDVMPDIEEDLDIEIREEDLRIDTYRSSGAGGQHINKTSSAVRITHLPTNIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ +AM++L+A+LY ++++ A + S R ++ +IR+Y + Sbjct: 236 NERSQFQNKDKAMQMLKAKLYLLKQQENAEKVSGIR-GEVKEIGWGNQIRSYVMQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N ++ V+ G ID IN L Sbjct: 295 KDHRTNAETGNVDSVMDGNIDLFINAYLKW 324 >gi|57234653|ref|YP_181313.1| peptide chain release factor 2, programmed frameshift [Dehalococcoides ethenogenes 195] gi|57225101|gb|AAW40158.1| peptide chain release factor 2, programmed frameshift [Dehalococcoides ethenogenes 195] Length = 362 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 109/343 (31%), Positives = 172/343 (50%), Gaps = 8/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + E+E + + ++ ++ +Q DL + Sbjct: 20 DIAAKELEITELESASASPDFWQDQQNAQKAMKKLAANKRVSEVWRGLEQRVNDLLELFA 79 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + + + EV + EI LE L D ++ +L + AG GG E+ Sbjct: 80 LTHEDPSLGNEIEREVNTLTAEIDTLEVG----LAFSGQYDSRNALLTVHAGAGGVESQD 135 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RM+ R+A + + +EVL S ++ G K I G + +K E GVHR+ R Sbjct: 136 WAGMLLRMFMRWAEKKGFGMEVLDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIR 195 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A HTS A V V+PEA + D+DI EDI+ID R+SG GGQ+V +AVR+ Sbjct: 196 LSPFDADHARHTSFALVEVMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRV 255 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+GI+V + +E+SQHQNR AM++L ++L VE + A ER+ + +I S + + Sbjct: 256 THIPSGIVVASQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKIKGERI-SAEWGNQ 314 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + DHR + + E VL+G +D IN L + Sbjct: 315 IRSYVLHPYKMVKDHRTDYEVGNAEAVLEGELDGFINAYLRQN 357 >gi|118580454|ref|YP_901704.1| peptide chain release factor 2 [Pelobacter propionicus DSM 2379] gi|118503164|gb|ABK99646.1| bacterial peptide chain release factor 2 (bRF-2) [Pelobacter propionicus DSM 2379] Length = 361 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 172/347 (49%), Gaps = 17/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + EIE +++ D + +E ++ I+ ++D ++++D+ Sbjct: 13 DVDGKRESIQEIESKIAAPGFWDNADSSQGILKERTSLEKIV---QLWDSLVRQQEDVRV 69 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I +++ L ++ + + + + D SC + I G GG+E Sbjct: 70 MIELGEEEADEETLKEVGEMNNRLQQGV--EAAEFQRMLSGEHDRNSCFISINPGAGGTE 127 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY RY + WK + D+ G K ++SG + +K E+G+HR Sbjct: 128 SQDWAEMLLRMYLRYCEKKGWKTSITDYQSGDEAGIKSATFSVSGEYAYGYLKAEAGIHR 187 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDS 242 + R+ +++ R HTS A+V PE E D+DI D+R+DT R+ G+GGQHVNTTDS Sbjct: 188 LVRISPFDSNARRHTSFASVYAFPEIEEEDIDIKIADSDLRVDTFRSGGAGGQHVNTTDS 247 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGS 299 AVRITH+PT I+V SE+SQ NR AMKVLRA+LY+ E + S K +IG Sbjct: 248 AVRITHLPTNIVVACQSERSQILNRATAMKVLRAKLYEKEVQERTARASEIASEKKEIGW 307 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 G +IR+Y + D R + + VL G +++ + L Sbjct: 308 G---SQIRSYVLHPYKMVKDLRTGVESGNPDAVLDGALEEFVVAYLM 351 >gi|66810982|ref|XP_639198.1| peptide chain release factor 1 [Dictyostelium discoideum AX4] gi|60467811|gb|EAL65826.1| peptide chain release factor 1 [Dictyostelium discoideum AX4] Length = 430 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 144/328 (43%), Positives = 204/328 (62%), Gaps = 3/328 (0%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 K+++E + + +K +E ++L T++ + + + + ++E Sbjct: 102 SEIKKISKELQETAEPLGYFGDLIEKLKELKELQTMLVEETDEDGKQMIKSDINKLKQEE 161 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 I LE ++ + LLP DD ILEIRAGTGGSEA LF D++ MY Y + W E Sbjct: 162 IEPLEKQLLFSLLPGSKDDAGDAILEIRAGTGGSEAQLFTQDVYEMYRSYCLQKGWTFEP 221 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L S + GGY+++ ++SG+GVF +K+ESGVHRVQRVP TE GR+HTS TVA+LPE Sbjct: 222 LELSVTEVGGYRDVTVSVSGKGVFGFLKYESGVHRVQRVPLTETQGRIHTSTITVAILPE 281 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLR 268 ++D+ I D+++D R+SG+GGQ VNTTDSAVRITH+PTGI V E+SQHQNR + Sbjct: 282 PKDVDIQIHDRDLKVDIYRSSGNGGQSVNTTDSAVRITHLPTGITVAMQDERSQHQNRSK 341 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 AMK+L+AR+Y+ ER R+ NER + R QIGS RSERIRTYN+ Q RITDHR+++ L Sbjct: 342 AMKILKARIYERERIRLQNERVSERNAQIGSALRSERIRTYNYPQDRITDHRVSIN-GNL 400 Query: 329 EYVLQGY-IDDIINPLLTAHQAKMIGSA 355 + +D I+ +L K + Sbjct: 401 NSCMNSDGLDSFIDEILVEFHTKELEEL 428 >gi|298252599|ref|ZP_06976393.1| protein chain release factor B [Gardnerella vaginalis 5-1] gi|297532963|gb|EFH71847.1| protein chain release factor B [Gardnerella vaginalis 5-1] Length = 378 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 169/355 (47%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK A++E + +E D + + +S S++ Q +D T+I Sbjct: 25 DVDSLKVTIADLEKQAAEPGLWDDSEHAQQVTSKLSAAQSQLKRLQAVDQRIEDTKTLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + +++ + +++ L D +S ++ IR+G GG +AA Sbjct: 85 LGQEEGDADSMSEAQEELGNIAHEL--DDMEVQTLLDGEYDARSAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K +++ +S ++ G K + + R+ E G HR+ R Sbjct: 143 FAQMLLRMYLRWAERNGYKTKMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR T + V V+P A +DIP DIR+DT +ASG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTGFSAVEVIPLVEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 TH+PTG++V+ E+SQ QNR AM VL++RL ++ E +A +K G Sbjct: 263 THLPTGLVVSMQDERSQIQNRAAAMAVLQSRLLVLK----HAEEAAKKKELAGDIKASWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID I + + + + E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDGFIEAGIRWRHEQRVAAQKE 373 >gi|239623407|ref|ZP_04666438.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522373|gb|EEQ62239.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 338 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 101/327 (30%), Positives = 170/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D K T + ++ + + +QE +D+ +I +++ L Sbjct: 1 MEEPGFWDNPEKSTRMVREAKNLKDEVETFRELEQEYEDIQVMIQMGYEEND-ASLIPEI 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + LE LLL + D + IL + AG GG+E+ + L+RMY R+A Sbjct: 60 EEMLGHFSDTLEKMRMKLLLSGEYDS-NNAILRLNAGAGGTESCDWCSMLYRMYCRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +K EVL D D+ G K + I+G + ++ E GVHR+ R+ A+G+ TS Sbjct: 119 KGFKTEVLDFLDGDEAGIKSVTVQINGENAYGYLRSEHGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + ++P+ E D++I +DIRIDT R+SG+GGQH+N T SA+RITH P+G +V +E+ Sbjct: 179 SCDIMPDIQEDIDIEINPDDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGTVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ +AM++L+++L+ ++++ A + + R + +IR+Y + DH Sbjct: 239 SQFQNKDKAMQMLKSKLFLLKQEEQAAKAAGIR-GDVKDNGWGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ VL G ID I+ L Sbjct: 298 RTGEESGNVDAVLDGNIDSFISAYLRW 324 >gi|316934390|ref|YP_004109372.1| peptide chain release factor 2 [Rhodopseudomonas palustris DX-1] gi|315602104|gb|ADU44639.1| peptide chain release factor 2 [Rhodopseudomonas palustris DX-1] Length = 376 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/338 (30%), Positives = 167/338 (49%), Gaps = 10/338 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R AE+ + + K + + + ++ + ++E D +I ++E Sbjct: 31 RLAELNKLAEDPNLWNDPQKAQKLMQERTSLEDALTGIGKVERELTDNIDMIEL--GEAE 88 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E K +++ L D LE+ AG GG+E+ + L R Sbjct: 89 GDEGIVKEAEEALKALKKEVARRELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A +K+E L SD ++ G K ISG + +K E+GVHR+ R+ +++ Sbjct: 149 MYVRWAEKHGFKIEYLEESDGEEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSN 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS ++V + P I +DI D+R DTMR+ G+GGQHVN T+SAVR+THIPTG+ Sbjct: 209 ARRHTSFSSVQIFPVIDDSIKIDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHIPTGV 268 Query: 254 -MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYN 310 +V + +SQH+NR +A +LRARLY++E K+ K +IG G +IR+Y Sbjct: 269 AVVCQAGRSQHKNRAQAWDMLRARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYV 325 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D+ + L Sbjct: 326 LQPYQMVKDLRTGVQTSDTAGVLDGDLDEFMAATLAQR 363 >gi|147669189|ref|YP_001214007.1| peptide chain release factor 2 [Dehalococcoides sp. BAV1] gi|146270137|gb|ABQ17129.1| bacterial peptide chain release factor 2 (bRF-2) [Dehalococcoides sp. BAV1] Length = 356 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 8/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E S + ++ ++ ++ DL + Sbjct: 15 DVSAKELEITELETASSNPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRINDLTELAV 74 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + + E+ + E+ LE L D+++ +L + AG GG E+ Sbjct: 75 LSREDPSLSNEIEHEISGLTAELDSLEVG----LAFSGQYDNRNALLTVHAGAGGVESQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RM+ R+A + + +E+L S ++ G K I G + +K E GVHR+ R Sbjct: 131 WAGMLLRMFMRWAEKKGFGMEILDQSPGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIR 190 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A HTS A V ++PEA + D+DI EDI+ID R+SG GGQ+V +AVR+ Sbjct: 191 LSPFDADHARHTSFALVEIMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRV 250 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+GI+V + +E+SQHQNR AM++L ++L VE + A ER+ + +I S + + Sbjct: 251 THIPSGIVVASQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKLKGERI-SAEWGSQ 309 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + DHR + + E VL+G +D I+ L + Sbjct: 310 IRSYVLHPYKMVKDHRTDYEVGNAEAVLEGELDGFISAYLRQN 352 >gi|260575218|ref|ZP_05843218.1| peptide chain release factor 2 [Rhodobacter sp. SW2] gi|259022478|gb|EEW25774.1| peptide chain release factor 2 [Rhodobacter sp. SW2] Length = 375 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 113/345 (32%), Positives = 172/345 (49%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E+ + + + + ++ IS + + +D +I ++ + Sbjct: 31 RLEEMNAMIEDGDLWSDPARAQKLMRERQALLDAISTHKLIETGLRDNVELIEMGEAEGD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +++ E + L L D LE+ AG GG+E+ + L R Sbjct: 91 AEIVSEAEQALRDLVE--LARGKELEALLDGEADGNDTFLEVNAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S SD ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSMSDGEEAGIKSAAYKISGPNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS ++V V P I++DIP DIRIDT R+SG+GGQHVNTTDSAVRITH+PT I Sbjct: 209 ARRHTSFSSVWVYPVVDDNIEIDIPAGDIRIDTYRSSGAGGQHVNTTDSAVRITHLPTNI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSS KSQHQNR M LRARLY +E + +A + + G +IR+Y Sbjct: 269 VVTSSMKSQHQNREACMVALRARLYQLELDKRNAAVNAQHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R + + VL G +D + L A + ++ Sbjct: 328 YQMVKDLRTGVETSDTQGVLDGDLDRFMAATLAMDVAGKSRAEAQ 372 >gi|291523975|emb|CBK89562.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium rectale DSM 17629] Length = 330 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 173/327 (52%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D K + + + ++ Y + K++ +D+ T+I E + E Sbjct: 1 MEAPDFWDDPEKSQSKMKELKSMKDDVATYAKLKEQYEDIETMIEM--GYEENDESLIPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + I L D + IL + AG GG+E+ + LFRMY ++A Sbjct: 59 IQQMLDDFESTYDGIRMKTLLSGEYDKCNAILRLNAGAGGTESCDWAAMLFRMYSKWADK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL S D D+ G K I ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFTLEVLDSLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ E D+++ EDIRIDT R+SG+GGQH+N T SA+RITH P+GI+V +E+ Sbjct: 179 SCDVMPDIEEDLDIEVKDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPSGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+A+LY ++++ A + + R ++ +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKAKLYLLKQEENAAKEAGIR-GEVKEIGWGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ + VL G ID IN L Sbjct: 298 RTDVETGNADAVLDGNIDIFINGYLKW 324 >gi|326383344|ref|ZP_08205032.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL B-59395] gi|326198094|gb|EGD55280.1| peptide chain release factor 2 [Gordonia neofelifaecis NRRL B-59395] Length = 370 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 165/347 (47%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E++ S+ + + + +S +++ + + DL + Sbjct: 24 DLEELRRRIDELEMQASDPDLWNDQDHAQKVTSELSHAQAELRRVTELRSRLDDLPVLYE 83 Query: 68 DHNSDS-EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + A + ++R + + D + ++ IR+G GG +AA Sbjct: 84 LAEAEEGDAGVSATEDADTERADLRRDIEAMEVKTMLAGEYDPREALVNIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A VEV +S ++ G K + ++ + E G HR+ Sbjct: 144 DWAQMLMRMYIRWAEQHGHSVEVYDTSYAEEAGLKSATFAVKAPYMYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V VLP +DI D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQGRRQTSFAEVEVLPVVETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+PTGI+V +EKSQ QN++ AM+VL+A+L + +R+ + A K G Sbjct: 264 LTHVPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLERKRQEERAQMDAL-KSDTG-ASWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R N+ VL G +D I + + Sbjct: 322 QMRSYVLHPYQMVKDLRTNVESNNPSAVLDGELDQFIEAGIRWRMDE 368 >gi|134300908|ref|YP_001114404.1| peptide chain release factor 2 [Desulfotomaculum reducens MI-1] gi|134053608|gb|ABO51579.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfotomaculum reducens MI-1] Length = 332 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 103/335 (30%), Positives = 163/335 (48%), Gaps = 12/335 (3%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D K++++ A + ++ + + Q+ + + + + + + Sbjct: 1 MLKDGFWDDLTYSQKVSQKLAGLKDRVAAFNTLESSLQDLEVMLELCQEEQDPLLEEEFS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ D IL + G GG+E+ + L RMY RY Sbjct: 61 SELSTLTGRLEEM-----ELEIMLAGPYDRGDAILSLHPGAGGTESQDWAQMLLRMYTRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVE+L D+ G K ++G + ++ E GVHR+ R+ +A+GR HT Sbjct: 116 CENHNYKVEILDLLPGDEAGIKSATIQVTGPNAYGYLRCEKGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V VLP E++V+I ED+RIDT RA G+GGQHVN TDSAVRITH+PTGI+V Sbjct: 176 SFASVDVLPLVDDEVEVNIRPEDLRIDTYRAGGAGGQHVNKTDSAVRITHLPTGIVVACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ NR AMK+L+++L D+E ++ +E +A R Q +IR+Y F Sbjct: 236 NERSQTTNRQAAMKLLKSKLIDLELQKKEDEMAALRGEQ-KDIAWGSQIRSYVFHPYSLA 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR + V+ G I + L K Sbjct: 295 KDHRTGEETGNVNAVMDGNIGQFVTAYLKYMAGKK 329 >gi|83951928|ref|ZP_00960660.1| peptide chain release factor 2 [Roseovarius nubinhibens ISM] gi|83836934|gb|EAP76231.1| peptide chain release factor 2 [Roseovarius nubinhibens ISM] Length = 375 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 174/337 (51%), Gaps = 5/337 (1%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K+R E R+ + D K + ++ I +D QE D +I + Sbjct: 29 KHRLEEFNARVEDPNLWDDPAKAQKLMRERQSLVDAIDTHDAINQEMSDNIELIELGEME 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + E + K ++E L D LEI AG GG+E+ + L Sbjct: 89 GDNE--VIGEAESALKSLKEKAGAKELEALLNGEADANDTFLEINAGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R + VE+ S S ++ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKRGYTVELQSESAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS ++V V P +I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 SAAKRHTSFSSVWVYPVVDDDIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E R + +A + + G +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRTADINAAHEAK-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R N+ + VL G +D + L + Sbjct: 326 QPYQMVKDLRTNVETSDTKGVLDGDLDQFMAATLAMN 362 >gi|319951472|ref|ZP_08025281.1| peptide chain release factor 2 [Dietzia cinnamea P4] gi|319434864|gb|EFV90175.1| peptide chain release factor 2 [Dietzia cinnamea P4] Length = 368 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 102/358 (28%), Positives = 168/358 (46%), Gaps = 17/358 (4%) Query: 2 VFLSHKQ---ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQE 58 + ++ I +L R E+E ++ + + + + +S I + + + +Q Sbjct: 15 TMTTVEKVLDIDELARRVDELEQMAADPDLWNDQDRAQKVTSELSYIQADLRRCRELRQR 74 Query: 59 EQDL---HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 +DL + + + D+ A+ L + + + D + ++ Sbjct: 75 IEDLPLMYELAEEEGGDAVEEADAERASLREDV------EAMEVKTMLSGEYDQREAVVN 128 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAG GG +AA F L RMY R+A KVEV +S ++ G K + ++ Sbjct: 129 IRAGAGGVDAADFAEMLMRMYVRWAEKNGHKVEVYDTSYAEEAGIKSATFIVKDPYMYGT 188 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGG 234 + E G HR+ R+ + GR TS A V VLP +++P ++R+D R+SG GG Sbjct: 189 LSVEQGTHRLVRISPFDNQGRRQTSFAEVEVLPVVETVDSIEVPENEVRVDVYRSSGPGG 248 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+THIPTGI+V +EKSQ QN++ AMKVL+A+L + +R+ A Sbjct: 249 QSVNTTDSAVRLTHIPTGIVVTCQNEKSQLQNKVAAMKVLQAKLLERKRQEERAAMDALG 308 Query: 294 KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ ++R+Y + + D R + VL G ID I + + Sbjct: 309 SG--GNASWGNQMRSYVLHPYQMVKDLRTEHEVNNPSAVLDGDIDGFIEAGIRWRMRE 364 >gi|184154810|ref|YP_001843150.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956] gi|183226154|dbj|BAG26670.1| peptide chain release factor 2 [Lactobacillus fermentum IFO 3956] Length = 355 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 177/349 (50%), Gaps = 10/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E M+ D + E+ AA++ + + + + + ++L Sbjct: 9 DLDALNESIAQGENEMTAPDFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAE 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + + E+ ++E L D ILEI G GG+EA Sbjct: 69 MLQAEPDPE--LKAELDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQD 126 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + VE + ++ G K + I G + + E GVHR+ R Sbjct: 127 WGEMLLRMYMRWANQHGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVR 186 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V+P I+V+I D+R+DT RASG+GGQH+N T+SAVRI Sbjct: 187 ISPFDSAARRHTSFASVDVMPILDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRI 246 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRS 303 TH+PTGI+ + +E+SQ QNR+ AM +L+++LY++E ++ A ER+ Q IG G Sbjct: 247 THLPTGIVTSSQAERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQKEIGWG--- 303 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + D R + + V+ G +D IN L + A+ Sbjct: 304 SQIRSYVFHPYTLVKDARTGYETHDVVGVMDGDLDPFINAYLQWNLAQK 352 >gi|313837551|gb|EFS75265.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA2] gi|314927570|gb|EFS91401.1| peptide chain release factor 2 [Propionibacterium acnes HL044PA1] gi|314972490|gb|EFT16587.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA3] gi|328907839|gb|EGG27602.1| peptide chain release factor 2 [Propionibacterium sp. P08] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 99/342 (28%), Positives = 168/342 (49%), Gaps = 8/342 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLEKQVAAPNLWDDQENAQWVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + L + ++ + + +L D++ ++ IR+ GG +AA F Sbjct: 90 TADDDKESLTEATSETVKLREEI--DALEVRILLSGQYDEREAVVTIRSEAGGVDAADFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 148 EMLLRMYLRWAERHGYKVEILDTSYAEEAGIKSATFVVHAPFSYGTLSVEQGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 268 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 324 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +Y + + D R N + + V G IDD I + + Sbjct: 325 SYVLHPYQMVKDLRTNHEVGNTDAVFDGDIDDFIGAGIRWRR 366 >gi|183603302|ref|ZP_02711260.2| peptide chain release factor 2 [Streptococcus pneumoniae CDC1087-00] gi|183603790|ref|ZP_02721350.2| peptide chain release factor 2 [Streptococcus pneumoniae MLV-016] gi|194397508|ref|YP_002037401.1| peptide chain release factor 2 [Streptococcus pneumoniae G54] gi|225856431|ref|YP_002737942.1| peptide chain release factor 2 [Streptococcus pneumoniae P1031] gi|225858565|ref|YP_002740075.1| peptide chain release factor 2 [Streptococcus pneumoniae 70585] gi|225860729|ref|YP_002742238.1| peptide chain release factor 2 [Streptococcus pneumoniae Taiwan19F-14] gi|298229611|ref|ZP_06963292.1| peptide chain release factor 2 [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255815|ref|ZP_06979401.1| peptide chain release factor 2 [Streptococcus pneumoniae str. Canada MDR_19A] gi|307067358|ref|YP_003876324.1| protein chain release factor B [Streptococcus pneumoniae AP200] gi|183570249|gb|EDT90777.1| peptide chain release factor 2 [Streptococcus pneumoniae CDC1087-00] gi|183578420|gb|EDT98948.1| peptide chain release factor 2 [Streptococcus pneumoniae MLV-016] gi|194357175|gb|ACF55623.1| peptide chain release factor 2 [Streptococcus pneumoniae G54] gi|225721230|gb|ACO17084.1| peptide chain release factor 2 [Streptococcus pneumoniae 70585] gi|225726237|gb|ACO22089.1| peptide chain release factor 2 [Streptococcus pneumoniae P1031] gi|225727373|gb|ACO23224.1| peptide chain release factor 2 [Streptococcus pneumoniae Taiwan19F-14] gi|306408895|gb|ADM84322.1| Protein chain release factor B [Streptococcus pneumoniae AP200] Length = 329 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 182/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+ + A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|163731562|ref|ZP_02139009.1| peptide chain release factor 2 [Roseobacter litoralis Och 149] gi|161395016|gb|EDQ19338.1| peptide chain release factor 2 [Roseobacter litoralis Och 149] Length = 374 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 116/345 (33%), Positives = 173/345 (50%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ ++ +D KQE D +I + + Sbjct: 31 RLEEFNARVEDPTLWDDPDAAQKLMRDRQMLVDAMATHDNIKQEMADNIELIELGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + + E + L D LE+ AG GG+E+ + L R Sbjct: 91 --ADVITDAENALRALEETAAKKELEALLDGEADSNDTFLEVNAGAGGTESCDWANMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S SD D+ G K I+G + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSMSDGDEAGIKSATYKITGLNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P ID+D+ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIDIDVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAAINEAHENK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R N + VL G +D + L + + ++ Sbjct: 328 YQMVKDLRTNFETSDTKGVLDGDLDGFMAATLALDASGKTRAEAQ 372 >gi|328945974|gb|EGG40121.1| peptide chain release factor RF2 [Streptococcus sanguinis SK1087] Length = 325 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/330 (31%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D ++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKQTYENFHQMTELFDESEILLDFMAEDESVQGELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQAAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|229020397|ref|ZP_04177152.1| Peptide chain release factor 2 [Bacillus cereus AH1273] gi|229026626|ref|ZP_04182968.1| Peptide chain release factor 2 [Bacillus cereus AH1272] gi|228734659|gb|EEL85311.1| Peptide chain release factor 2 [Bacillus cereus AH1272] gi|228740876|gb|EEL91119.1| Peptide chain release factor 2 [Bacillus cereus AH1273] Length = 326 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 166/333 (49%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ D+ + + H ++ + + +L Sbjct: 1 MMSAGFWDDQQGAQTVINEANALKDMVGSFRQLDETFENLEMTHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKTLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQH+NTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|319650621|ref|ZP_08004761.1| peptide chain release factor 2 [Bacillus sp. 2_A_57_CT2] gi|317397802|gb|EFV78500.1| peptide chain release factor 2 [Bacillus sp. 2_A_57_CT2] Length = 331 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 173/331 (52%), Gaps = 16/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M + D + + + ++ + + ++L ++ + + DL Sbjct: 1 MLQPGFWDDQQAAQVVISESNSLKEQVVEFHDLYETFENLELTYELVKEESDAELQADLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +++ LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EELKDLVKRLND-----FELQLLLSEEYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + +I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKKGFKVETLDYLPGDEAGIKSVTLSIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PT ++V Sbjct: 176 SFVSCEVMPEFNDEIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTNVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR RAMK+L+A+LY + + E + R Q IG G +IR+Y F Sbjct: 236 TERSQIKNRERAMKMLQAKLYQKKIEEQEAELAEIRGEQKDIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + ++ V+ G +D IN L Sbjct: 293 MVKDHRTNTEVGNVQGVMDGDLDMFINAYLR 323 >gi|227486641|ref|ZP_03916957.1| peptide chain release factor RF2 [Anaerococcus lactolyticus ATCC 51172] gi|227235353|gb|EEI85368.1| peptide chain release factor RF2 [Anaerococcus lactolyticus ATCC 51172] Length = 329 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 110/331 (33%), Positives = 162/331 (48%), Gaps = 8/331 (2%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 D K A +S + Y + +D +I E EV Sbjct: 2 SPNFWDNSDKAQTVMADLSDKKEDLKAYTDIEDAIKDNKDLIDLVELSDEDESKTLEEVD 61 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 + K+I++ + D + L I AG GG EA + LFRMY RY R Sbjct: 62 SNLKQIKKSLASLKLKTQLNGEYDKNNAYLSINAGAGGLEATDWADMLFRMYTRYCEKRG 121 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +KVEV ++ + GG K + + G + +K E GVHR+ R+ ++ R HTS ++V Sbjct: 122 FKVEVKDLNNEEAGGIKSVTLHVKGPYAYGYLKGEKGVHRLVRISPFDSQSRRHTSFSSV 181 Query: 205 AVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V PE + ++I D+RIDT RASG+GGQHVN TDSAVRITHIPTG++ + +E+SQ Sbjct: 182 DVFPELDEDTSIEIDPSDLRIDTYRASGAGGQHVNKTDSAVRITHIPTGVVATSQAERSQ 241 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RITDH 319 QNR AM +L ++L ++ + + + QI G +IR+Y F + DH Sbjct: 242 MQNRETAMNLLISKLIQIKEEEKKEKIEDIQGSYSQIAWG---SQIRSYVFQPYTMVKDH 298 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R N + +E V+ G I I+ L +Q K Sbjct: 299 RTNYEMGNVEAVMDGDIQGFIDAYLAQNQNK 329 >gi|242242124|ref|ZP_04796569.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144] gi|242234437|gb|EES36749.1| peptide chain release factor 2 [Staphylococcus epidermidis W23144] Length = 332 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/338 (31%), Positives = 168/338 (49%), Gaps = 17/338 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + A+ I+S + ++ + + ++L Sbjct: 1 MTDPDFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQEEYDEDMKKELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ + LL D + ILE+ G GG+E+ + G L RMY+RY Sbjct: 61 EEVQQFEEQIDQ-----YELQLLLDGPHDANNAILELHPGAGGTESQDWAGMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N K++ V+ G I I L + Sbjct: 293 SMVKDHRTNEETGKVDAVMDGEIGPFIEAYLRKEMDRQ 330 >gi|296129092|ref|YP_003636342.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109] gi|296020907|gb|ADG74143.1| peptide chain release factor 2 [Cellulomonas flavigena DSM 20109] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 112/350 (32%), Positives = 175/350 (50%), Gaps = 15/350 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD-- 68 L+ + AE+ + S D + +A+S S++ D+ + DL T++ Sbjct: 28 ALRAKIAELSEQASVPNLWDDPEAAQKVTSALSSAQSELERVDKLRGRIDDLETLVEMAA 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D++ A+ E++ I K++ ELE L D + ++ IRAG GG +AA F Sbjct: 88 EEDDADTLAEAEAELVGIRKDLGELE----IRTLLAGEYDVRDAVVTIRAGAGGVDAADF 143 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + VL +S ++ G K + F + E+G HR+ R+ Sbjct: 144 AEMLLRMYLRWAERHGYATSVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRI 203 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P V+IP +I++D R+SG GGQ VNTTDSAVR+T Sbjct: 204 SPFDNQGRRQTSFAAVEVIPLIEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMT 263 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSE 304 HIPTGI+V+ +EKSQ QNR A++VL++RL V ++ E A +K G + Sbjct: 264 HIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLVRQE----EERAAKKELAGDIKASWGD 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 ++R+Y + + D R + V G IDD I + +A+ + Sbjct: 320 QMRSYVLQPYQMVKDLRTEHEVGNPASVFDGDIDDFIEAGVRWRRAQQLE 369 >gi|57866389|ref|YP_188014.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A] gi|71153101|sp|Q8CPZ1|RF2_STAES RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|71153102|sp|Q5HQX5|RF2_STAEQ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|57637047|gb|AAW53835.1| peptide chain release factor 2 [Staphylococcus epidermidis RP62A] Length = 371 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 17/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHT 64 + + + E E M++ + K + A+ I++ + Sbjct: 25 DLENKETNIQEYEEMMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + +L + E+ + LL D + ILE+ G GG+E Sbjct: 85 LLQEEYDEDMKIELEEEVQQFEEQIDQ-----YELQLLLDGPHDANNAILELHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + +V L RMY+RY +KVE + D+ G K + I G + +K E GVHR Sbjct: 140 SQDWVSMLLRMYQRYCEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+S Sbjct: 200 LVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTES 259 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGS 299 A+RITH PTGI+V +E+SQ +NR AMK+L+++LY ++ + E + R Q IG Sbjct: 260 AIRITHHPTGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGW 319 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 G +IR+Y F I DHR N K++ V+ G I I L Sbjct: 320 G---SQIRSYVFHPYSMIKDHRTNEETGKVDAVMDGEIGPFIEAYLRKE 365 >gi|38233352|ref|NP_939119.1| peptide chain release factor 2 [Corynebacterium diphtheriae NCTC 13129] gi|76363349|sp|Q6NIM2|RF2_CORDI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|38199612|emb|CAE49268.1| peptide chain release factor 2 [Corynebacterium diphtheriae] Length = 369 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 DL++R E+E + S+ D + +S + +K+ +Q DL + Sbjct: 26 EDLESRVRELEQQASDPTLWDDPDTAQKVTTELSSVQAKLKKLSTLRQRIDDLPVMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D E D + + + ++E + + D + ++ IR+G GG +AA + Sbjct: 86 --DEEGEDALALADEELAELTADVEA-LEVKTMLSGEYDSREAVINIRSGAGGVDAADWA 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV++ S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 143 EMLMRMYIRWAEKNDHKVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRIS 202 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A + VLP +DIP ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 203 PFDNQGRRQTSFAEIEVLPVVEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 263 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 320 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + + D R N + + VL G ID ++ + A+ Sbjct: 321 SYVLHPYQMVKDLRTNYEVNDPQKVLDGDIDGLLEAGIRWRMAEQ 365 >gi|300114892|ref|YP_003761467.1| peptide chain release factor 2 [Nitrosococcus watsonii C-113] gi|299540829|gb|ADJ29146.1| peptide chain release factor 2 [Nitrosococcus watsonii C-113] Length = 331 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/335 (31%), Positives = 174/335 (51%), Gaps = 15/335 (4%) Query: 18 EIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E++ ++ D +L +E A + ++S ++ ++ + ++L + + + + Sbjct: 2 EVDRELAVPSVWDEPERAQQLGQERAQLQSVVSPLAELGEEIMQAKELFELAVEEDDEGT 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +++ +A + + ++ + + D + L+I+AG+GG+EA + L R Sbjct: 62 AQEM-----IAELDAVEQRLAKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQDWASMLLR 116 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+ +K + S+ + G K G F ++ E+GVHR+ R ++ Sbjct: 117 MYLRWGEKHDFKTGLTEVSEGEVAGIKSATIHFEGEYAFGWLRTETGVHRLVRKSPFDSG 176 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V V PE E D++I D+RIDT RASG+GGQHVN TDSAVRITH+ + + Sbjct: 177 NRRHTSFASVFVYPEVDERIDIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHLSSNL 236 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTYN 310 +V SE+SQHQN+ AM LRA+LY++E + E+ + K IG G +IR Y Sbjct: 237 VVQCQSERSQHQNKAHAMAQLRAKLYELEMRSRQAEKQAAEEAKADIGWG---SQIRNYV 293 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q RI D R + + + VL G +D I L Sbjct: 294 LDQSRIKDLRTGVEIGNTQGVLDGDLDPFIEASLK 328 >gi|110680026|ref|YP_683033.1| peptide chain release factor 2 [Roseobacter denitrificans OCh 114] gi|123361814|sp|Q165J6|RF2_ROSDO RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|109456142|gb|ABG32347.1| peptide chain release factor 2 [Roseobacter denitrificans OCh 114] Length = 374 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 115/345 (33%), Positives = 173/345 (50%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ ++ +D KQE D +I + + Sbjct: 31 RLEEFNARVEDPTLWDDPDAAQKLMRERQMLVDAMATHDSIKQEMADNIELIELGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + + E + L D LE+ AG GG+E+ + L R Sbjct: 91 --ADVVSDAENALRALEETAAKKELEALLDGEADSNDTFLEVNAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S SD D+ G K I+G + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSMSDGDEAGIKSATYKITGLNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P ID+++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIDIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNAAINEAHENK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R N + VL G +D + L + + ++ Sbjct: 328 YQMVKDLRTNFETSDTKGVLDGDLDGFMAATLALDASGKTRAEAQ 372 >gi|78356848|ref|YP_388297.1| peptide chain release factor 2 [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219253|gb|ABB38602.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 358 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 128/345 (37%), Positives = 182/345 (52%), Gaps = 16/345 (4%) Query: 15 RFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R EIE ++S + +A KLT E + + ++++ Q K + Q + + N+ Sbjct: 22 RLEEIEKQLSSPDAWNAPEKLTPVLREKSQLENSVARLDALRQAKDDMQGWLELAEEENT 81 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + L + L E LL +D + ILEI G GG+EA + Sbjct: 82 QEVLEQLE-----EQAGILEALLEETEVGLLLSAEEDKHAAILEIHPGAGGTEAQDWAEM 136 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A ++K E L D D+ G K + I G + +K E G+HR+ R+ Sbjct: 137 LLRMYVRWAESHEFKAEYLDYLDGDEAGIKSVTLKIDGTNAYGLLKGEKGIHRLIRISPY 196 Query: 192 EASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +ASGR HTS A+V V+P+A EI +DI D+RID R+SG GGQ VNTT SAVR+THIP Sbjct: 197 DASGRRHTSFASVDVIPDAGEEITIDIKDSDLRIDIFRSSGPGGQSVNTTSSAVRVTHIP 256 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIR 307 TGI +EKSQH N+ AM++LRARLY+ E +R E+ A+ K IG G +IR Sbjct: 257 TGITAQCQNEKSQHHNKETAMQILRARLYEAEIRRRDAEKQADYASKEAIGWG---SQIR 313 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 TY R + DHR N + +E VL G +D ++ L + Sbjct: 314 TYTLQPYRLVKDHRSNFEVGDVEAVLDGELDALMRNHLLYQHERR 358 >gi|260436566|ref|ZP_05790536.1| peptide chain release factor 2 [Synechococcus sp. WH 8109] gi|260414440|gb|EEX07736.1| peptide chain release factor 2 [Synechococcus sp. WH 8109] Length = 356 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 162/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ D ++ + + +++S + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWDDQQNAQKQMRRLDEVKAQLSQLAGWRGAVDDAQATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + + E ++R+ + L D + +L I AG GG++A Sbjct: 67 LYELDPD--EDLLQEAQNGLNQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E +DIP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKIEEDVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I + Sbjct: 245 LHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R N ++ V+ G +D I+ L Sbjct: 304 IRNYVFQPYQMVKDLRTNEETNDVQAVMDGALDPFIDACLRQ 345 >gi|163739752|ref|ZP_02147160.1| peptide chain release factor 2 [Phaeobacter gallaeciensis BS107] gi|163741027|ref|ZP_02148420.1| peptide chain release factor 2 [Phaeobacter gallaeciensis 2.10] gi|161386018|gb|EDQ10394.1| peptide chain release factor 2 [Phaeobacter gallaeciensis 2.10] gi|161386982|gb|EDQ11343.1| peptide chain release factor 2 [Phaeobacter gallaeciensis BS107] Length = 374 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 118/339 (34%), Positives = 174/339 (51%), Gaps = 5/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D ++ I Y KQ+ D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDADAAQALMRDRQMLVDAIDTYKSIKQDLSDNMELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 ++ E + + E E+ LL + + LEI AG GG+E+ + L R Sbjct: 91 AEVISDAEAALKTLKEKAAEKELEALLDGEADSN--DTFLEINAGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSESAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS ++V V P I++D+ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFSSVWVYPVVDDNIEIDVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHEPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R + +A + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNADINAAHEAK-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D + L + A Sbjct: 328 YQMVKDLRTSHETSDTKGVLDGDLDGFMAATLALNVAGK 366 >gi|154250427|ref|YP_001411252.1| peptide chain release factor 2 [Fervidobacterium nodosum Rt17-B1] gi|154154363|gb|ABS61595.1| peptide chain release factor 2 [Fervidobacterium nodosum Rt17-B1] Length = 364 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 111/341 (32%), Positives = 179/341 (52%), Gaps = 8/341 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D K + E+E + + K + I I + ++ K +D+ I Sbjct: 22 EDKKEKLKELESETLKPDFWNDQKKAQQINREIQRIRRIVEDMEKIKVLFEDIEVGIELA 81 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D +++ + V + ++IRE E L+ D + L I G GG+E+ + Sbjct: 82 EEDPSMQEHLEQIVDEVGEKIREFEL----ALILNGKFDGSNAYLSIHPGAGGTESQDWA 137 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + VE++ + ++ G K I G + +K+E GVHR+ R+ Sbjct: 138 SMLLRMYMRWAERKGFSVELVDYQEGEEAGIKSATLYIKGDFAYGYLKYERGVHRLVRIS 197 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V VLP +ID++I ED+R+DT RASG+GGQ+VN T+SA+RITH Sbjct: 198 PFDANKRRHTSFASVNVLPEIEDDIDIEIRPEDLRVDTYRASGAGGQYVNKTESAIRITH 257 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QNR AMK+L+ARLY +E ++ + + ++ +IR Sbjct: 258 LPTGIVVTCQTERSQLQNRETAMKMLKARLYQLELEKRRKQIEQI-QGELRDISWGNQIR 316 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F + DHR ++ +E V+ G ID I L + Sbjct: 317 SYVFQPYTMVKDHRTDVETGNIEAVMDGEIDMFIEAELVYY 357 >gi|213965439|ref|ZP_03393634.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46] gi|213951823|gb|EEB63210.1| peptide chain release factor 2 [Corynebacterium amycolatum SK46] Length = 370 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 107/349 (30%), Positives = 171/349 (48%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + +L +R E+E + ++ D + +A+S +K+ D + DL + Sbjct: 24 DVDELSDRIRELEAQAADPSLWDDPDHAQQVTSALSQAQAKMKKIDSLRGRLDDLSVMYE 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + SDS+ ++A E + I LE D++ ++ IR+G GG +A Sbjct: 84 LAEEESDSDAVEMADAERAELRAAIESLEVTTM----LSGPYDEREAVINIRSGAGGVDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A KVEV +S ++ G K + G ++ + E G HR+ Sbjct: 140 ADWAEMLMRMYLRWADKHGHKVEVYDTSYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRL 199 Query: 186 QRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A + +DIP D+RID R+SG GGQ VNTTDSAV Sbjct: 200 VRISPFDNQGRRQTSFAEVEVLPVVEETDHIDIPESDLRIDVYRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +EKSQHQN+ AM+VL+A+L + +R+ E A G+ Sbjct: 260 RLTHVPTGIVVTCQNEKSQHQNKASAMRVLQAKLLEKKRQEERAELDAL--GAGGNASWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R + + VL G +D I + A+ Sbjct: 318 NQMRSYVLHPYQMVKDLRTEYEVNNPQSVLDGDLDGFIEAGIRWRMAQQ 366 >gi|114776305|ref|ZP_01451350.1| peptide chain release factor 2 [Mariprofundus ferrooxydans PV-1] gi|114553135|gb|EAU55533.1| peptide chain release factor 2 [Mariprofundus ferrooxydans PV-1] Length = 372 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 168/346 (48%), Gaps = 13/346 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + + E+ R+ + D + + + I + + + D T+ Sbjct: 25 HFDVDAREEELRELNARIEDPTLWDRPEEAQKLMQEKTRIERTLQTFHNSTEALDDALTL 84 Query: 66 IGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 SD + + A + +++ E+ LE D +S L+I AG+GG+ Sbjct: 85 FEMGAEESDPDTQMEAVETLDSVQAELEALELARM----LGGETDAESAFLDINAGSGGT 140 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA + L RMY R+A + +K E++ + ++ G K +I G + +K E GVH Sbjct: 141 EAQDWAEMLLRMYLRWAERKGFKTELMECTAGEEAGIKSATVSIKGEYAYGFLKAEVGVH 200 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R ++ R HTS A+V P+ + ++DI D+R DT RASG+GGQH+N TDS Sbjct: 201 RLVRKSPYDSGNRRHTSFASVFAYPDIEKDIEIDIDPSDVRTDTYRASGAGGQHINKTDS 260 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGS 299 AVR+TH+PT I+V +++SQH+NR A +L+ARLY+ E E+ K IG Sbjct: 261 AVRLTHVPTNIVVQCQNDRSQHKNRAAAWSMLKARLYEHELNLRNAEKQEIEDGKTDIGW 320 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 G +IR+Y Q RI D R + + L G ID I L Sbjct: 321 G---HQIRSYVLDQSRIKDLRTGMETGNTQAFLDGDIDAFIQAELM 363 >gi|152977397|ref|YP_001376914.1| peptide chain release factor 2 [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026149|gb|ABS23919.1| peptide chain release factor 2 [Bacillus cytotoxicus NVH 391-98] Length = 327 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 111/333 (33%), Positives = 168/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E+ D + ++ K D+ + + H ++ + +L Sbjct: 1 MMEAGFWDDQQGAQTVINEANALKDMVGKFRQLDETFENLEVTHELLKEEYDKDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKSLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED+++DT RASG+GGQHVNTTDSAVRITHIPT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKVDTYRASGAGGQHVNTTDSAVRITHIPTNTIVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G ID I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEIDPFIDAYLRSR 325 >gi|302342486|ref|YP_003807015.1| LigA [Desulfarculus baarsii DSM 2075] gi|301639099|gb|ADK84421.1| LigA [Desulfarculus baarsii DSM 2075] Length = 371 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 178/346 (51%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R AE++ + + + + E ++ + ++ ++ ++ + L + Sbjct: 22 ESKTKRLAELDKIVGANDFWEDQNAAKAVMRERTDLAQSLEELDALNRSMEDAEVLLELA 81 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + S ++ Q + + L DD + IL I AG GG++A Sbjct: 82 VEEDDASLTAEIDQAH-----DALERQIGRLEAARLLGGPDDHRGAILAINAGAGGADAQ 136 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L R+Y RYA + ++V L D+ G K + I+G + +K ESGVHR+ Sbjct: 137 DWAQMLTRLYGRYAERQGFQVVELDFQAGDEAGVKSVTMEINGPRAYGLLKGESGVHRLV 196 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +AS R HT+ A+V V P+ +I++++ DIRIDT RASG+GGQHVN T SAVR Sbjct: 197 RISPFDASHRRHTAFASVYVSPQVDDDIEIEVKDADIRIDTYRASGAGGQHVNKTSSAVR 256 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDR 302 ITH PTG++V +EKSQH+N+ AMKVLRARLY++E + E+ +I G Sbjct: 257 ITHFPTGVVVQCQNEKSQHRNKDMAMKVLRARLYELEIHKREAEKREVHASHQEIAWG-- 314 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + R + DHR + + ++ VL G +DD I L Sbjct: 315 -SQIRSYVLAPYRLVKDHRTGVEVGNVDSVLDGQLDDFIQGYLLWR 359 >gi|325694230|gb|EGD36146.1| peptide chain release factor RF2 [Streptococcus sanguinis SK150] Length = 325 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 179/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + + Q + + ++ D ++ + + Sbjct: 1 MTEPDFWDDNIAAQKTSQDLNELKQTYENFHQMTELFDESEILLDFLAEDESVQGELEEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +EK + E LL + D+ + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LAELEKMMTSYE----MTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKQVAEVDSLKGDKKEISWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|325925182|ref|ZP_08186595.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas perforans 91-118] gi|325544436|gb|EGD15806.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas perforans 91-118] Length = 329 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 107/324 (33%), Positives = 160/324 (49%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L E + + + I+ + DL + + D + ++ Sbjct: 3 NDAERAQALGRERSMLEKTVIGIADVLSGLADAGDLLELA-ESEQDEDTALAVIADLDNY 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + +LE + D + ++I+AG GG+EA + L RMY R+A R WK Sbjct: 62 QAHVEKLEFQRM----FSGQMDSANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K I G + +K E GVHR+ R ++ R HTS +V V Sbjct: 118 TELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQ Sbjct: 178 SPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+L A+LY++E ++ E+ A K IG G +IR Y Q RI D R Sbjct: 238 NRDNAMKMLAAKLYELEVQKRNAEKDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D+ + L A Sbjct: 295 IERSDTQKVLDGDLDEFVEASLKA 318 >gi|294786673|ref|ZP_06751927.1| peptide chain release factor 2 [Parascardovia denticolens F0305] gi|294485506|gb|EFG33140.1| peptide chain release factor 2 [Parascardovia denticolens F0305] Length = 377 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 99/356 (27%), Positives = 174/356 (48%), Gaps = 15/356 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--I 66 + L+ + AE+E + S D + +S ++ + Q D+ T+ + Sbjct: 26 LDSLRGKIAELEKQASAPGLWDDPETAQRVTSNLSASQAEYKRLTEAGQRLDDIDTLYSL 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 G D + + A E+ + K++ ++E + D+++ ++ IR+G GG +AA Sbjct: 86 GMEEEDEDSKQEAWSELKKLSKDLSDIEIQTL----LDGEYDNRAAVVTIRSGAGGVDAA 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A ++KV+V+ +S ++ G K + + ++ E G HR+ Sbjct: 142 DWAQMLMRMYIRWAERHQYKVQVIDTSYAEEAGIKSATFRVDAPYAYGKLSVEGGTHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + + R TS A V V+P +D+P D+R+DT + G GGQ VNTT SAVR Sbjct: 202 RISPFDNNSRRQTSFAAVEVIPLVEPTDHIDVPDSDVRVDTYMSHGPGGQGVNTTYSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDR 302 +TH+PTGI+V E+SQ QNR AM VL++RL ++++ E +A +K G Sbjct: 262 LTHLPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLKQE----EEAAKKKELAGDIKASW 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + V G ID I+ + + + E Sbjct: 318 GDQMRSYVLHPYQMVKDLRTGYETSDPQAVFDGDIDGFIDAGIRWRHQQRKEARQE 373 >gi|328949576|ref|YP_004366911.1| hypothetical protein Marky_0036 [Marinithermus hydrothermalis DSM 14884] gi|328449900|gb|AEB10801.1| hypothetical protein Marky_0036 [Marinithermus hydrothermalis DSM 14884] Length = 367 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 107/352 (30%), Positives = 172/352 (48%), Gaps = 9/352 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + R AE+E +++ + + + I + Y + + + L + Sbjct: 18 DIPAKERRLAELEAELNDPNLWNDAERARRISQEAARIRRTVETYRTLEADLEGLVELWN 77 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + E + E E L +K+ IL I+ G GG+EA Sbjct: 78 ELDPEEREALAGEAEEAQKKLEALYHE------TLLTFPHAEKNAILTIQPGAGGTEACD 131 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R A + VEV+ + + G + G + + E+GVHR+ R Sbjct: 132 WAEMLLRMYRRLADRLGFSVEVVDVTPGAEAGIDYAQIIVRGENAYGLLSVENGVHRLVR 191 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +ASGR HTS A V V+PE + +V+I ED+RID R+ G GGQ VNTTDSAVRI Sbjct: 192 PSPFDASGRRHTSFAGVEVMPEVDDTVEVEIKPEDLRIDVFRSQGHGGQGVNTTDSAVRI 251 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTGI+V + +SQH+N+ A+KVL++RL+ +E K+ E + R ++ + + Sbjct: 252 VHLPTGIIVTCQNTRSQHKNKEIALKVLKSRLFQLEWKKKQEELAKLR-GEVKPIEWGSQ 310 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR+Y + + DHR L + + VL G I+D I L + A++ Sbjct: 311 IRSYVLDKQYVKDHRTGLMRHDPQNVLDGDIEDFIWAGLEWKAGRREAVAAD 362 >gi|149202750|ref|ZP_01879722.1| peptide chain release factor 2 [Roseovarius sp. TM1035] gi|149144032|gb|EDM32066.1| peptide chain release factor 2 [Roseovarius sp. TM1035] Length = 375 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 114/337 (33%), Positives = 174/337 (51%), Gaps = 5/337 (1%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++R E R+ + D + ++ + +D K E +D +I ++ Sbjct: 29 RHRLEEFNARVEDPTLWDDPARAQTLMRERQALVDALETHDGIKNELEDNLGLIELGEAE 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 S+ + + E E+ LL + + LEI AG GG+E+ + L Sbjct: 89 SDAEVVGEAEAAIKALAKVAAAKELEALLDGEADSN--DTFLEINAGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R + VE+ S S D+ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKRGYTVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ++ + HTS ++V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH+PT Sbjct: 207 SAAKRHTSFSSVWVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHMPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSS+KSQHQNR AMK L++RLY +E R + + G +IR+Y Sbjct: 267 GIVVTSSQKSQHQNRDIAMKALKSRLYQLELDRRNAAINEAHDAK-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +D+ + L + Sbjct: 326 QPYQMVKDLRTGVETSDTKGVLDGDLDEFMAATLAMN 362 >gi|15923744|ref|NP_371278.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu50] gi|15926431|ref|NP_373964.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus N315] gi|82750458|ref|YP_416199.1| peptide chain release factor 2 [Staphylococcus aureus RF122] gi|156979082|ref|YP_001441341.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu3] gi|253731382|ref|ZP_04865547.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|255005545|ref|ZP_05144146.2| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794925|ref|ZP_05643904.1| peptide chain release factor 2 [Staphylococcus aureus A9781] gi|262052329|ref|ZP_06024532.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3] gi|296275163|ref|ZP_06857670.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MR1] gi|13700645|dbj|BAB41942.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus N315] gi|14246523|dbj|BAB56916.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu50] gi|82655989|emb|CAI80394.1| peptide chain release factor 2 [Staphylococcus aureus RF122] gi|156721217|dbj|BAF77634.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Mu3] gi|253724907|gb|EES93636.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|257788897|gb|EEV27237.1| peptide chain release factor 2 [Staphylococcus aureus A9781] gi|259159769|gb|EEW44810.1| peptide chain release factor 2 [Staphylococcus aureus 930918-3] gi|283470047|emb|CAQ49258.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ST398] gi|285816456|gb|ADC36943.1| Peptide chain release factor 2 [Staphylococcus aureus 04-02981] gi|298694086|gb|ADI97308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ED133] gi|312829246|emb|CBX34088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ECT-R 2] gi|320141998|gb|EFW33826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MRSA177] gi|329313475|gb|AEB87888.1| Peptide chain release factor 2 [Staphylococcus aureus subsp. aureus T0131] Length = 330 Score = 217 bits (552), Expect = 2e-54, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 168/333 (50%), Gaps = 17/333 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D K + A+ I++ + + ++ + + DL Sbjct: 1 MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + K LL D + ILE+ G GG+E+ + LFRMY+RY Sbjct: 61 QEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 SMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 325 >gi|291397162|ref|XP_002714988.1| PREDICTED: mitochondrial translational release factor 1-like [Oryctolagus cuniculus] Length = 380 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 138/314 (43%), Positives = 204/314 (64%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + +K+QE ++ ++ D N D +R LA+ E+ +KEI +L+ +I LL+P Sbjct: 63 ELVAAAKLLSEKEQELRETEHLLRDENED--LRRLAENEITLCQKEITQLKQQIVLLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ +LE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLVLEVTAGIGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ + +D+R Sbjct: 181 SASIGGSEAYKLMKFEGGVHRVQRVPKTERQGRIHTSTMTVAILPQPTEINLVVNPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +NR AMK L A+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLKNREMAMKKLCAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + ++R RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +++ LE ++G +D++I Sbjct: 301 EEETSKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSVHDLEAFMKGDYQLDEMI 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKDYANYESLLE 374 >gi|229817216|ref|ZP_04447498.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM 20098] gi|229785005|gb|EEP21119.1| hypothetical protein BIFANG_02476 [Bifidobacterium angulatum DSM 20098] Length = 373 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 107/355 (30%), Positives = 173/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + LK + AE+E + +E D + + +S S++ + Q D+ T+ Sbjct: 25 DMDRLKAQIAELEQQAAEPGLWDDPENAQKVTSRLSAAQSQLKRLNSASQRIDDVETLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D++ AQ EV I+ ++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGQEEEDADTLAEAQEEVKKIQSDLDDMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDSDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG++V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGLVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G +D I + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDLDGFIQAGIRWRHEQRHAEDAE 373 >gi|126434177|ref|YP_001069868.1| peptide chain release factor 2 [Mycobacterium sp. JLS] gi|166225109|sp|A3PWV0|RF2_MYCSJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|126233977|gb|ABN97377.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp. JLS] Length = 371 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 100/347 (28%), Positives = 167/347 (48%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + + +S +++ ++ +Q +DL + Sbjct: 24 DVDGLRDRIQKLEQEASDPNLWDDQSRAQKVTSELSHAQNELRRVEELRQRVEDLPVLYE 83 Query: 68 DH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E A ++R + L D++ ++ IR+G GG +AA Sbjct: 84 MAAEEEGQDAENAGAEADAELAKLRVDIEAMEVRTLLSGEYDEREAVVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +D+P D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFADVEVLPVVETTDHIDVPETDLRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AM+VL+A+L +++ A K GS Sbjct: 264 LTHIPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLARKKQEERAALDAL-KGDGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + + Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPSAVLDGDIDGFLEAGIRWRNRR 368 >gi|114561768|ref|YP_749281.1| peptide chain release factor 2 [Shewanella frigidimarina NCIMB 400] gi|114333061|gb|ABI70443.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella frigidimarina NCIMB 400] Length = 320 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 101/323 (31%), Positives = 160/323 (49%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E AA+ ++ I D ++ Q L + + + + D A Sbjct: 3 NEPERAQALGKERAALVVVVKTIDDMDTGLEDIQGLLELAIEEDDEETFNDAAAELEELD 62 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + + + D +C L+I++G+GG+EA + + RMY R+ + Sbjct: 63 TRLAD-----LEFRRMFSGKSDASNCYLDIQSGSGGTEAQDWANMVLRMYLRWGDAHGYS 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ +D D G K +G F M+ E+GVHR+ R ++SG+ HTS +V V Sbjct: 118 PELMEVTDGDVAGIKGATIKFTGEYAFGWMRTETGVHRLVRKSPFDSSGKRHTSFCSVFV 177 Query: 207 LPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + D+RIDT RASG+GGQHVN TDSA+RITH+PT +V +++SQH+ Sbjct: 178 YPEIDDDIEIDINPSDLRIDTYRASGAGGQHVNKTDSAIRITHLPTNTVVQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR A K L+A+LY++E + + + + K IG G +IR+Y RI D R Sbjct: 238 NRDSAFKQLKAKLYELEMHKQNADKQAAEDAKSDIGWG---SQIRSYVLDDARIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 295 VENRNTQTVLDGDLDKFIEASLK 317 >gi|253575894|ref|ZP_04853228.1| peptide chain release factor 2 [Paenibacillus sp. oral taxon 786 str. D14] gi|251844688|gb|EES72702.1| peptide chain release factor 2 [Paenibacillus sp. oral taxon 786 str. D14] Length = 342 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 115/339 (33%), Positives = 175/339 (51%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + A E +M+ D K A ++ + S + Y + E + + Sbjct: 2 KQEMIANYEEKMAAPDFWDDNEKAQGIIAEMNAVKSSVDQYTALQNEYD--ELEMMAELA 59 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + EV +++ + E LL D + ILE+ G GG+E+ + Sbjct: 60 EEEGDESLAAEVADSVEKLVKKLEEFELQLLLNQPYDKMNAILELHPGAGGTESQDWGQM 119 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A R +KVE L D+ G K + I G + +K E GVHR+ R+ Sbjct: 120 LLRMYTRWAEKRGFKVETLDYLPGDEAGIKSVTLLIKGYNAYGYLKAEKGVHRLVRISPF 179 Query: 192 EASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +ASGR HTS + V+PE ++ +++I ED++IDT RASG+GGQH+NTTDSAVRITHIP Sbjct: 180 DASGRRHTSFVSCDVVPEISDDVEIEIRNEDLKIDTYRASGAGGQHINTTDSAVRITHIP 239 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+V +E+SQ +NR RAM +LR++LY+ + + E R Q +IR+Y Sbjct: 240 TGIVVTCQNERSQIKNRERAMTMLRSKLYERKIEEQQRELDEIRGEQ-SDIAWGSQIRSY 298 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + DHR N+ + V+ G +D I+ L + Sbjct: 299 VFHPYSMVKDHRTNVETGNVGAVMDGDLDAFIDGYLRSQ 337 >gi|311739769|ref|ZP_07713603.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium ATCC 33035] gi|311304842|gb|EFQ80911.1| peptide chain release factor RF2 [Corynebacterium pseudogenitalium ATCC 33035] Length = 367 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 158/345 (45%), Gaps = 10/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L R E+E + + D + + +S +K+ + + +D+ + Sbjct: 26 EALAARIRELEAQAGDPSLWDDPAHAQQVTSELSAAQAKVRKLESLRVRLEDMPVMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + + + D + ++ IR+G GG +AA + Sbjct: 86 EEEGDT-----SLADDELDSLESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWA 140 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV+V S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 141 EMLMRMYTRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRIS 200 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 201 PFDNQGRRQTSFAEVEVLPVVEQTDHIDIPDNDVRVDVYRSSGPGGQSVNTTDSAVRLTH 260 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 261 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEEQAELDAL--GAGGNASWGNQMR 318 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + + D R N + VL G ID + + + Sbjct: 319 SYVLHPYQMVKDLRTNFEVGDPSKVLDGDIDGFLESGIRWRMQQQ 363 >gi|47459025|ref|YP_015887.1| peptide chain release factor 1 [Mycoplasma mobile 163K] gi|61214626|sp|Q6KIA0|RF1_MYCMO RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|47458353|gb|AAT27676.1| peptide chain release factor 1 [Mycoplasma mobile 163K] Length = 358 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 149/361 (41%), Positives = 228/361 (63%), Gaps = 9/361 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +K + +K ++ E ++ + Y K+++E +IS I+ + + +Q Sbjct: 1 MEDTLYKSLKSIKEKYDSNEKKLLLPEVFNNIKEYTKISKENNSISEIVENFNKFLINEQ 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +D ++ + D E+ A+ E+ E E +ELE ++ L+LPKD +D+++ I+EIR Sbjct: 61 TIKDAKILLDEK--DEEMVSFAKNEIHKSELENQELEKKLRILILPKDENDERNVIIEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 GG EA +F GDL +MY ++A + K K+++L ++ GG+ ++ + G +S++K Sbjct: 119 GAAGGDEANIFAGDLLKMYNKWADINKMKLKLLDYANASSGGFSQVTFLVEGDKAYSKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQR+P TE GRVHTS TV V+PE ++ +V+I D++IDT R+SG GGQ Sbjct: 179 FESGVHRVQRIPVTETQGRVHTSTTTVTVMPEVDDVAEVEINPVDLKIDTFRSSGPGGQS 238 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+P+GI+V+ EKSQ NR A+K+L+++LYD+E K+ E RKL Sbjct: 239 VNTTDSAVRITHLPSGIVVSSQDEKSQISNRESALKILKSKLYDLEIKKRNEETGKFRKL 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 GSG RSE+IRTYN+ Q RITDHRI + L+ ++G I++II L QA+ I A Sbjct: 299 A-GSGARSEKIRTYNYPQDRITDHRIGFSTS-LKIAMEGKINNIIEALHAEEQAEKIKEA 356 Query: 356 S 356 + Sbjct: 357 N 357 >gi|326511439|dbj|BAJ87733.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 517 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 97/353 (27%), Positives = 163/353 (46%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L A +E + +S D K E A++ + K+ + + K + ++ T++ Sbjct: 165 LEQLLEEIASLENKSGDSTLWDDPSKAQELLVALTELKEKVKLLNDFKSQVEEADTIVQL 224 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D ++ I AG GG++A + Sbjct: 225 TEELDSIDTGLLEEASKIIKALNKALDNFEMTRLLSGPYDKDGAVITISAGAGGTDAQDW 284 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 285 ADMLLRMYVRWGEKQRYKSRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQ 344 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P E +D IP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 345 SPFNAKGLRQTSFAGVEVMPLLPEESLDVEIPEEDLDISFTRAGGKGGQNVNKVETAVRM 404 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V + E+SQ N+++A++ L+A+L + ++ A+E R + + ++ Sbjct: 405 VHIPTGIAVRCAEERSQLANKIKALRRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 463 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR Y F + + D R + V+ G +D I L + +A+E Sbjct: 464 IRNYVFHPYKLVKDVRTACETSDISGVMDGELDPFIKAYLQY----KLSAAAE 512 >gi|261367680|ref|ZP_05980563.1| peptide chain release factor 2 [Subdoligranulum variabile DSM 15176] gi|282570473|gb|EFB76008.1| peptide chain release factor 2 [Subdoligranulum variabile DSM 15176] Length = 373 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 172/343 (50%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R AE+E +M+ D K + + + +K+ + + + ++ T++ Sbjct: 27 IEASEKRLAELEHQMTLPGFYDDQEKSQRVISEMGEVKNKLERFGKLSTQYEEAETLLEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +++ ++ E E E + + D + IL AGTGG+EA + Sbjct: 87 IEEENDPSLASEGEQAVEGVEKAIDEL--QLMTMLNGEYDHNNAILTFHAGTGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+A + VEVL D D+ G K I G + +K E GVHR+ R+ Sbjct: 145 AEMLYRMYTRWAEAHGYSVEVLDVLDGDEAGIKSASMMIKGANAYGMLKSEHGVHRLVRI 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A++ V+PE I ++I DI + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFASLEVMPELNDNIQIEINPADIEMQVYRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+ +++SQ QNR AM++++A+LY + ++ ++ + + +I G Sbjct: 265 HKPTGIVTSCQTQRSQLQNREYAMEMMKAKLYQIALQQHKDKIDDIKGVQNEIAWG---H 321 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N ++ V+ G +D I L A Sbjct: 322 QIRSYVFMPYTLVKDHRTNYESGNVQAVMDGDLDGFIYAYLKA 364 >gi|71276052|ref|ZP_00652333.1| Peptide chain release factor 2 [Xylella fastidiosa Dixon] gi|71899474|ref|ZP_00681632.1| Peptide chain release factor 2 [Xylella fastidiosa Ann-1] gi|170729664|ref|YP_001775097.1| peptide chain release factor 2 [Xylella fastidiosa M12] gi|71163135|gb|EAO12856.1| Peptide chain release factor 2 [Xylella fastidiosa Dixon] gi|71730787|gb|EAO32860.1| Peptide chain release factor 2 [Xylella fastidiosa Ann-1] gi|167964457|gb|ACA11467.1| peptide chain release factor RF-2 [Xylella fastidiosa M12] Length = 338 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 166/333 (49%), Gaps = 15/333 (4%) Query: 21 LRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 + + +L E + + ++ I+ E + + + D E+ Sbjct: 3 RELESPTIWNTPDYAQQLGRERSLLDKTVTGIAHVLNGVAEASEFLDLA-EIEQDQEMLQ 61 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 +V + ++ +LE + D + ++I+AG GG+EA + L RMY Sbjct: 62 AVLNDVDIYQLQVEKLEFQRM----FSGKMDGANAFVDIQAGAGGTEAQDWAEMLLRMYL 117 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+A R WK E+L S + G K + G + +K E+GVHR+ R ++ R Sbjct: 118 RWAEGRGWKAELLEVSGGEVAGIKSATFRVEGDFAYGWLKTETGVHRLVRKSPFDSDNRR 177 Query: 198 HTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS +V V PE ID++I D++ D R+SG+GGQHVN T+SAVRITH+P+GI+V Sbjct: 178 HTSFTSVFVSPEVDDNIDIEINPADLKTDVYRSSGAGGQHVNKTESAVRITHVPSGIVVA 237 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQ 313 +E+SQH NR RAMK+L A+LY+ E ++ E+ K IG G +IR Y Q Sbjct: 238 CQTERSQHANRDRAMKMLAAKLYESEIQKRNAEKDVLEASKSDIGWG---SQIRNYVLDQ 294 Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D+ I L A Sbjct: 295 SRIKDLRTGVERSDTQKVLDGDLDEFIEASLKA 327 >gi|325922147|ref|ZP_08183937.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas gardneri ATCC 19865] gi|325547382|gb|EGD18446.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas gardneri ATCC 19865] Length = 329 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 109/324 (33%), Positives = 161/324 (49%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L E + + + I+ + DL + + D + ++ Sbjct: 3 NDSERAQALGRERSMLEKTVIGIADVLAGLADAADLLELA-ESEQDEDTAVAVLADLDKY 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + +LE + D + ++I+AG GG+EA + L RMY R+A R WK Sbjct: 62 QVHVEKLEFQRM----FSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K I G V+ +K E GVHR+ R ++ R HTS +V V Sbjct: 118 TELMEVSGGEVAGIKSATIRIEGEFVYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQ Sbjct: 178 SPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+L A+LY++E ++ ER A K IG G +IR Y Q RI D R Sbjct: 238 NRDNAMKMLAAKLYELEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D+ + L A Sbjct: 295 IERSDTQKVLDGDLDEFVEASLKA 318 >gi|283769449|ref|ZP_06342347.1| peptide chain release factor 2 [Bulleidia extructa W1219] gi|283103974|gb|EFC05359.1| peptide chain release factor 2 [Bulleidia extructa W1219] Length = 346 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 91/348 (26%), Positives = 176/348 (50%), Gaps = 6/348 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + K + M++ + K + + + + + + + DL Sbjct: 1 MATRFDLDQKKQEIQKNNDLMAQEDFWNDQKKAQKIIKENNSLKDLVDQHTKLYETTLDL 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + S + + + V + + +L DD + ILEI G GG Sbjct: 61 --LASVTELQSSLDEDMKELVEEEYVQYDQDYALFEVRVLLSGPYDDHNAILEIHPGAGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + G L+RMY R+A + + ++VL ++ G K + +SG + +K E+GV Sbjct: 119 TEAMDWAGMLYRMYTRFAERKGYHLDVLDYQPGEEAGVKSVSMRVSGNMAYGYLKAENGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++ R HTS A+V ++PE + +++I +D+ + TMR+SG+GGQH+N TD Sbjct: 179 HRLVRISPFDSNARRHTSFASVEIMPEFEDDLEIEIEDKDLDVITMRSSGAGGQHINKTD 238 Query: 242 SAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+TH PTG + + S++SQ QNR + +L+++L ++ + +R++ K ++ + Sbjct: 239 SAVRMTHKPTGITVFSQSQRSQLQNRETCLNMLKSKLLQLKIRE-QEQRASEIKGEVKAN 297 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +IR+Y F+ + D R + ++ V+ G I+ I+ L + Sbjct: 298 EWGSQIRSYVFAPYTMVKDLRTGYEVGNVQSVMDGDIEGFIDSYLRSQ 345 >gi|312126885|ref|YP_003991759.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor hydrothermalis 108] gi|311776904|gb|ADQ06390.1| hypothetical protein Calhy_0649 [Caldicellulosiruptor hydrothermalis 108] Length = 370 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 118/353 (33%), Positives = 176/353 (49%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ +E S + I + KI + + + +DL Sbjct: 19 MRVSLDIDRLESELKSLESETSRPDFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDL 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + S E E+ ++ + +L D + IL I AG GG Sbjct: 79 KVLTEL--SLEEGNHEMAEELEKELLDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+AA + +KVE L ++ G K + I G + +K E GV Sbjct: 137 TEAQDWAEMLLRMYTRWAAKKGYKVETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT RASG+GGQHVN T+ Sbjct: 197 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTE 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 257 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIG 316 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 317 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 366 >gi|319401169|gb|EFV89384.1| peptide chain release factor 2 [Staphylococcus epidermidis FRI909] Length = 332 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 104/338 (30%), Positives = 167/338 (49%), Gaps = 17/338 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + A+ I+S + ++ + + ++L Sbjct: 1 MTDPDFWNDQTKAQDIIDKNNALKSIVSGYYQLTNAVDDMSATRELLQEEYDEDMKKELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ + LL D + ILE+ G GG+E+ + L RMY+RY Sbjct: 61 EEVQQFEEQIDQ-----YELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N K++ V+ G I I L + Sbjct: 293 SMVKDHRTNEETGKVDAVMDGEIGPFIEAYLRKEMDRQ 330 >gi|227514375|ref|ZP_03944424.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC 14931] gi|227087241|gb|EEI22553.1| peptide chain release factor RF2 [Lactobacillus fermentum ATCC 14931] Length = 355 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/349 (30%), Positives = 177/349 (50%), Gaps = 10/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L A+ E M+ D + E+ AA++ + + + + + ++L Sbjct: 9 DLDALNESIAQGENEMTAPDFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAE 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + + E+ ++E L D ILEI G GG+EA Sbjct: 69 MLQAEPDPE--LKAELDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQD 126 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + VE + ++ G K + I G + + E GVHR+ R Sbjct: 127 WGEMLLRMYMRWANQHGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVR 186 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V+P I+V+I D+R+DT RASG+GGQH+N T+SAVRI Sbjct: 187 ISPFDSAARRHTSFASVDVMPILDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRI 246 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRS 303 TH+PTGI+ + +E+SQ QNR+ AM +L+++LY++E ++ A ER+ Q IG G Sbjct: 247 THLPTGIVTSSQAERSQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWG--- 303 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + D R + + V+ G +D IN L + A+ Sbjct: 304 SQIRSYVFHPYTLVKDARTGYETHDVIGVMDGDLDPFINAYLQWNLAQK 352 >gi|299535985|ref|ZP_07049304.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1] gi|298728590|gb|EFI69146.1| peptide chain release factor 2 [Lysinibacillus fusiformis ZC1] Length = 328 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 109/332 (32%), Positives = 166/332 (50%), Gaps = 16/332 (4%) Query: 22 RMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M E D + I+++ + + ++ E + Sbjct: 1 MMLEPGFWDDQQGAQVIINEGNGLKAIVNEYKDLVETHENLDMTLELLR-----EEPDEE 55 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q E+ E ++ + LL D + ILE+ G GG+E+ + L RMY R Sbjct: 56 LQEELGKELAEFQQKMADFELQLLLSGPYDQNNAILELHPGAGGTESQDWGSMLLRMYTR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A R +KVE + D+ G K + +I G F ++ E GVHR+ R+ ++SGR H Sbjct: 116 WAEKRGFKVETVDYLPGDEAGIKSVTLSIKGHNAFGYLQAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS + V+PE + ++DI ED++IDT RA+G+GGQH+NTTDSAVRITHIPTG +V Sbjct: 176 TSFVSCDVMPEFDDNIEIDIRTEDLKIDTYRATGAGGQHINTTDSAVRITHIPTGTIVQC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR +AM +L+ +LY +E + + R Q IG G +IR+Y F Sbjct: 236 QAERSQIKNREKAMTMLKGKLYQLELDKQQAQLDEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + V+ G +D IN L Sbjct: 293 SMVKDHRTNEETGNVGAVMDGDLDPFINAYLR 324 >gi|257870245|ref|ZP_05649898.1| peptide chain release factor 2 [Enterococcus gallinarum EG2] gi|257804409|gb|EEV33231.1| peptide chain release factor 2 [Enterococcus gallinarum EG2] Length = 329 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 100/326 (30%), Positives = 170/326 (52%), Gaps = 6/326 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D + + + ++Q +E ++L ++ + + A++ Sbjct: 1 MADPTFWDDSEQAQKVINENNANKETYDQFNQLAEEFEELEVLLEMIQEEPDAEMEAELA 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +L + D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 ERIQALNEKM--GTYELSMLLDEPYDRNNAIIELHPGAGGTESQDWGSMLLRMYTRFCEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGYQVETLDYQAGDEAGIKSVTLLIKGHNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE ID++I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + +++ Sbjct: 179 SVDVMPELDGAIDIEINSDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +NR +AM +L+A+LY +E ++ E +A R Q+ G +IR+Y F + DH Sbjct: 239 SQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQMEIG-WGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLT 345 R N ++ V+ G +D I+ L Sbjct: 298 RTNFETGNVQAVMDGDLDGFIDAYLK 323 >gi|15837713|ref|NP_298401.1| peptide chain release factor 2 [Xylella fastidiosa 9a5c] gi|9106068|gb|AAF83921.1|AE003947_1 peptide chain release factor 2 [Xylella fastidiosa 9a5c] Length = 338 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 166/333 (49%), Gaps = 15/333 (4%) Query: 21 LRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 + + +L E + + ++ I+ E + + + D E+ Sbjct: 3 RELESPTIWNTPDYAQQLGRERSLLDKTVTGIAHVLNGVAEASEFLDLA-EIEQDQEMLQ 61 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 +V + ++ +LE + D + ++I+AG GG+EA + L RMY Sbjct: 62 AVLNDVDIYQLQVEKLEFQRM----FSGKMDGANAFVDIQAGAGGTEAQDWAEMLLRMYL 117 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+A R WK E+L S + G K + G + +K E+GVHR+ R ++ R Sbjct: 118 RWAEGRGWKAELLEVSGGEVAGIKSATFRVEGDFAYGWLKTETGVHRLVRKSPFDSDNRR 177 Query: 198 HTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS +V V PE ID++I D++ D R+SG+GGQHVN T+SAVRITH+P+GI+V Sbjct: 178 HTSFTSVFVSPEVDDNIDIEINPADLKTDVYRSSGAGGQHVNKTESAVRITHVPSGIVVA 237 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQ 313 +E+SQH NR RAMK+L A+LY+ E ++ E+ K IG G +IR Y Q Sbjct: 238 CQTERSQHANRDRAMKMLAAKLYESEIQKRNAEKDVLEASKSDIGWG---SQIRNYVLDQ 294 Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D+ I L A Sbjct: 295 SRIKDLRTGVERSDTQKVLDGDLDEFIEASLRA 327 >gi|269794320|ref|YP_003313775.1| peptide chain release factor 1 [Sanguibacter keddieii DSM 10542] gi|269096505|gb|ACZ20941.1| bacterial peptide chain release factor 1 (bRF-1) [Sanguibacter keddieii DSM 10542] Length = 361 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 137/347 (39%), Positives = 199/347 (57%), Gaps = 19/347 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L AEIE ++++ + L YA + +++ + + Sbjct: 9 EPLLAEHAEIEQQLADPAVHADAARARTLGRRYAELGQVVAAYRGWRSAVDDA------- 61 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + E+ A++ + ++ +L+P+D DD + ILEI+AG GG E+A Sbjct: 62 EAAAELAAEEPAFAEELPALQTAATDAAEKLRRVLIPRDPDDGRDVILEIKAGEGGEESA 121 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKFE 179 LF GDL RMY RYA R WK EV+ ++++D GGYK++ + G ++ +K+E Sbjct: 122 LFAGDLLRMYLRYAERRGWKTEVIEATESDLGGYKDVQVAVKAKGTVAPEDGPWANLKYE 181 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVN 238 GVHRVQRVP TE+ GR+HTSAA V V PE + +I D+RID R+SG GGQ VN Sbjct: 182 GGVHRVQRVPVTESQGRIHTSAAGVLVFPEVEDAGELEIDQNDLRIDVYRSSGPGGQSVN 241 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH+PTGI+V+ +EKSQ QNR +AM+VLRARL ++ A + R+ Q+ Sbjct: 242 TTDSAVRITHVPTGIVVSMQNEKSQLQNREQAMRVLRARLLAARQEEEAAAANDIRRSQV 301 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + DRSERIRTYN+ + RI DHR Y L+ VL G ++ ++ + Sbjct: 302 RTVDRSERIRTYNYPENRIADHRTGYKSYNLDQVLDGDLEPVVRSAI 348 >gi|315194373|gb|EFU24765.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus CGS00] Length = 330 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/333 (32%), Positives = 167/333 (50%), Gaps = 17/333 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D K + A+ I++ + + ++ + DL Sbjct: 1 MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + K LL D + ILE+ G GG+E+ + LFRMY+RY Sbjct: 61 QEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 SMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 325 >gi|118467007|ref|YP_883159.1| peptide chain release factor 2 [Mycobacterium avium 104] gi|166225107|sp|A0QJS1|RF2_MYCA1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|118168294|gb|ABK69191.1| peptide chain release factor 2 [Mycobacterium avium 104] Length = 370 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 163/346 (47%), Gaps = 5/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E S+ D + + +S ++ ++ + DL + Sbjct: 24 DVDGLRARIEKLEHEASDPQLWDDQARAQRVTSELSHAQGELRRIEELRARLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + E A E A K +R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEGEGAAEALAEADAELKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAAD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ R Sbjct: 144 WAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 204 ISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRL 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS + Sbjct: 264 THIPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRSEERAELDAL-KGEGGS-SWGNQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + K Sbjct: 322 MRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 367 >gi|260887225|ref|ZP_05898488.1| peptide chain release factor 2 [Selenomonas sputigena ATCC 35185] gi|260863287|gb|EEX77787.1| peptide chain release factor 2 [Selenomonas sputigena ATCC 35185] Length = 330 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 167/329 (50%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 M E D + + ++ I + Y + + D ++ +D+ + Q Sbjct: 1 MGEPTFWDNAEEAQKINQELAAIKGSVDKYKEIVSKTDDAQALLEMALEENDTSLEPEVQ 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E I+ +RELE +L D + IL + AG GG+EA + L RMY R+A Sbjct: 61 TEFETIKTAVRELEL----EVLLSGPYDANNAILTLHAGAGGTEAQDWTQMLLRMYGRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + V D+ G K I+G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 ERHGFSVVTADLLPGDEAGVKSATLFINGHNAYGYLKSEKGVHRLVRISPFDSNARRHTS 176 Query: 201 AATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 + ++PE + ++V I + D+R+DT RASG+GGQH+N T SAVR+TH+PTGI+V + Sbjct: 177 FSACDIMPEIDDAVEVAINMADVRVDTYRASGAGGQHINKTSSAVRMTHMPTGIVVQCQN 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 E+SQ QNR + MK+LRA+L+++E+++ E Q + +IR+Y F + Sbjct: 237 ERSQLQNREQCMKMLRAKLFELEQEKKEAEIQKLEGDQQK-IEWGSQIRSYVFQPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + ++ V+ G +D I L A Sbjct: 296 DMRTGMETGNVQAVMDGDLDAFIEAFLAA 324 >gi|293365065|ref|ZP_06611782.1| peptide chain release factor RF2 [Streptococcus oralis ATCC 35037] gi|307702226|ref|ZP_07639186.1| peptide chain release factor 2 [Streptococcus oralis ATCC 35037] gi|291316515|gb|EFE56951.1| peptide chain release factor RF2 [Streptococcus oralis ATCC 35037] gi|307624239|gb|EFO03216.1| peptide chain release factor 2 [Streptococcus oralis ATCC 35037] Length = 325 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 179/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVHDELVEQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ + LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LTELDMMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|56697430|ref|YP_167798.1| peptide chain release factor 2 [Ruegeria pomeroyi DSS-3] gi|56679167|gb|AAV95833.1| peptide chain release factor 2 [Ruegeria pomeroyi DSS-3] Length = 375 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 170/336 (50%), Gaps = 5/336 (1%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++R E R+ + D + ++ + IY + + D +I + Sbjct: 29 QHRLEEFNARVEDPNLWDNPENAQKLMRERQTLVDALDIYKGIETDLADNIELIELGEME 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + + E R E E+ L D LEI AG GG+E+ + L Sbjct: 89 DDQDVIKDAEAALKALRERAAEKELEAL--LDGEADGNDTFLEINAGAGGTESCDWASML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A + +KVE+ S S D+ G K ISG + +K ESGVHR+ R+ + Sbjct: 147 ARMYVRWAEKKGYKVELQSESAGDEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPYD 206 Query: 193 ASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 A+ + HTS ++V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITHIPT Sbjct: 207 AAAKRHTSFSSVWVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPT 266 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY E R E +A + + G +IR+Y Sbjct: 267 GIVVTSSEKSQHQNRDIAMKALKSRLYQQELDRRNAEINAAHEAK-GDAGWGNQIRSYVL 325 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + + D R + VL G +D + L Sbjct: 326 QPYQMVKDLRTGHETSDTKGVLDGALDGFMAATLAM 361 >gi|295398527|ref|ZP_06808561.1| peptide chain release factor RF2 [Aerococcus viridans ATCC 11563] gi|294973250|gb|EFG49043.1| peptide chain release factor RF2 [Aerococcus viridans ATCC 11563] Length = 353 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 167/343 (48%), Gaps = 10/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ AE E M + D K A + + ++ E ++L + Sbjct: 9 DLEKMEADLAEYEADMVQPGFWDDSEKAQSVIDANNALKKVYDEFNNLADEYEELTLLNE 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + ++ + + + +L D +LEI G GG+E+ Sbjct: 69 MVKEEPDPDLSKELVNRIQAFQAKI--SAYERNILLSGEYDHNDALLEIHPGAGGTESQD 126 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY+R+A ++V L + D+ G K + I G + +K E G+HR+ R Sbjct: 127 WASMLLRMYQRWADQHDYQVTTLDFQNGDEAGIKSVTLEIKGLNAYGFLKSEDGIHRLVR 186 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V ++P +++I DI +D RASG+GGQH+N T SAVR+ Sbjct: 187 ISPFDSNKRRHTSFASVEIMPVLDQNTEIEIDESDIEMDVFRASGAGGQHINKTSSAVRL 246 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 TH+PTGI+V + ++SQ QNR AMK+L+A+L + ++ A E R K +I G Sbjct: 247 THVPTGIVVASQGQRSQFQNRDTAMKMLQAKLAHLLAEKNAKELDEIRGEKSEIAWG--- 303 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + ++ V+ G +D I+ L Sbjct: 304 SQIRSYVFHPYNMVKDHRTDYETANVQGVMDGDLDGFIDAYLK 346 >gi|117928939|ref|YP_873490.1| peptide chain release factor 2 [Acidothermus cellulolyticus 11B] gi|166223620|sp|A0LVP4|RF2_ACIC1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|117649402|gb|ABK53504.1| bacterial peptide chain release factor 2 (bRF-2) [Acidothermus cellulolyticus 11B] Length = 369 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 11/340 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A++E + ++ + + +S + ++I + ++ D+ + Sbjct: 25 DLPAMRREAADLERQAADPGLWNDPENAQRVTSRLSFLQAEIRRVEGLRKRLDDVMVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D R A E+ A++K I +LE L D + ++ I + GG +A Sbjct: 85 LAEAENDEPTRTEALAEMAALQKAIDDLEV----RTLLSGEYDAREALVTINSQAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A + E+L +S ++ G K + + + E G HR+ Sbjct: 141 ADWAQMLLRMYLRWAERHGYPTEILDTSYAEEAGIKSATFIVHAPFTYGLLAAEHGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + R TS A V V+P +DIP ++IR+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQARRQTSFAGVDVVPVVEKTDHIDIPEDEIRVDVFRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V +E+SQ QNR AM VL+ARL + R+ A + +A R + Sbjct: 261 RITHLPTGIVVTCQNERSQLQNRATAMMVLQARLLERRRQEEAAKLAALRGE--TTTSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 +IR Y + + D R + VL G ID+ I+ Sbjct: 319 TQIRNYVLHPYQLVKDLRTEVETSNTAGVLDGEIDEFIDA 358 >gi|315604645|ref|ZP_07879708.1| peptide chain release factor RF1 [Actinomyces sp. oral taxon 180 str. F0310] gi|315313657|gb|EFU61711.1| peptide chain release factor RF1 [Actinomyces sp. oral taxon 180 str. F0310] Length = 364 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 133/347 (38%), Positives = 196/347 (56%), Gaps = 19/347 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + ++E +M++ ++ ++ YA + + + + Q + Sbjct: 10 LEPLLAEYEQVEAQMADPRTLADPQLMRRVGRRYAELGRVKAAADRLSAAAGDLQAAREL 69 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + S ++ + E A + + ++ L P+D +D ILEI+AG GG E+ Sbjct: 70 AVEDRSFADEIPALEEEEAAAHEALVKI-------LAPRDPEDAMDVILEIKAGEGGEES 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFSRMKF 178 ALF DL RMY RYA W V LS++ + GG+K++ I GV++ +K+ Sbjct: 123 ALFASDLARMYGRYAEAHGWSVTELSATHTELGGFKDVTLAIRAKGTPAPDEGVWAHLKY 182 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHV 237 E GVHRVQRVP TE+ GR+HTSA V V+PE + D + D+RID R+SG GGQ V Sbjct: 183 EGGVHRVQRVPITESQGRIHTSAVGVFVMPEIEDDDEIVIDPADLRIDVYRSSGPGGQSV 242 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRITH+P+GI+V+ +EKSQ QN+ A++VL +RL R + E SA R Q Sbjct: 243 NTTDSAVRITHLPSGIVVSMQNEKSQLQNKEAALRVLASRLAAEARAKREAEASAQRLSQ 302 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 + + DRSERIRTYNF + RI DHR + L+ VL G +D +I+ L Sbjct: 303 VRTVDRSERIRTYNFPENRIADHRTGFKAHNLDAVLSGALDAVISSL 349 >gi|73748409|ref|YP_307648.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1] gi|73660125|emb|CAI82732.1| peptide chain release factor 2 [Dehalococcoides sp. CBDB1] Length = 356 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 8/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E S + ++ ++ ++ DL + Sbjct: 15 DVSAKELEITELETASSNPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRINDLTELAV 74 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + + E+ + E+ LE L D+++ +L + AG GG E+ Sbjct: 75 LSREDPSLSNEIEHEISGLTAELDSLEVG----LAFSGQYDNRNALLTVHAGAGGVESQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RM+ R+A + + +E+L S ++ G K I G + +K E GVHR+ R Sbjct: 131 WAGMLLRMFMRWAEKKGFGMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIR 190 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A HTS A V ++PEA + D+DI EDI+ID R+SG GGQ+V +AVR+ Sbjct: 191 LSPFDADHARHTSFALVEIMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRV 250 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+GI+V + +E+SQHQNR AM++L ++L VE + A ER+ + +I S + + Sbjct: 251 THIPSGIVVASQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKLKGERI-SAEWGSQ 309 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + DHR + + E VL+G +D I+ L + Sbjct: 310 IRSYVLHPYKMVKDHRTDYEVGNAEAVLEGELDGFISAYLRQN 352 >gi|160931692|ref|ZP_02079086.1| hypothetical protein CLOLEP_00523 [Clostridium leptum DSM 753] gi|156869337|gb|EDO62709.1| hypothetical protein CLOLEP_00523 [Clostridium leptum DSM 753] Length = 374 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 118/344 (34%), Positives = 178/344 (51%), Gaps = 10/344 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + +K E+E + D K + S + +K+S Y+ +D T+I Sbjct: 27 LEAMKKEIGELEEAQTSPDFWDDMEKSQKIIQRTSMLKNKVSAYETLVSGYEDALTLIEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + ++ L + + E + L D + IL AG GG+EA + Sbjct: 87 GDEEEDLSILPDAQQEVEKVRKELEEQRLATL--LTGEYDANNAILTFHAGAGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+ +KV+ L D ++ G K V I G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYCRWGERHNFKVKTLDYLDGEEAGLKSAVVLIEGLNAYGYLKSEAGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +ASGR HTS A++ V+PE E +V+I EDI++D RASG+GGQ VN T SAVR+T Sbjct: 205 SPFDASGRRHTSFASLEVMPEINEDVEVEIAPEDIKMDVYRASGAGGQKVNKTSSAVRLT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 HIPTGI+V E+SQHQNR AMK+L ++L +++ + ++ S + +Q IG G Sbjct: 265 HIPTGIVVSCQVERSQHQNREVAMKMLASKLMEIKEREHLDKISDIKGVQKEIGWG---S 321 Query: 305 RIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + DHR N + + V+ G ID IN L Sbjct: 322 QIRSYVFMPYTLAKDHRTNYEMGNINAVMDGDIDGFINAYLKQE 365 >gi|323489912|ref|ZP_08095134.1| peptide chain release factor 2 [Planococcus donghaensis MPA1U2] gi|323396419|gb|EGA89243.1| peptide chain release factor 2 [Planococcus donghaensis MPA1U2] Length = 327 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/332 (32%), Positives = 169/332 (50%), Gaps = 10/332 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + + + ++ + ++ Y + ++++ + + + ++ Sbjct: 1 MLDPDFWNNQETAQTVISELNGLKEVVNAYYSFMETQENMEMSLELLREEDDEDLHEDVD 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + +L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 KDMKQFISDL--ADYELTMLLSEPYDKNNAILELHPGAGGTESQDWCSMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLAGDEAGVKSVTLGIRGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE EI++DI ED++IDT RASG+GGQH+NTTDSAVRITH PTG +V E+ Sbjct: 179 SCEVMPEFTGEIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHAPTGAVVTCQQER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AM++L+A+LY ++ + R Q IG G +IR+Y F + Sbjct: 239 SQIKNREKAMQMLKAKLYALKIEEEEARLLEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 DHR N L V+ G ID IN LL + Sbjct: 296 DHRTNFETGNLGAVMDGDIDGFINSLLRSKME 327 >gi|73663271|ref|YP_302052.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495786|dbj|BAE19107.1| peptide chain release factor 2 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 334 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 171/338 (50%), Gaps = 17/338 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ D K + A+ +++ + + ++ ++ + + ++ +DL Sbjct: 1 MTDPTFWDNQEKAQDVIDKNNALKSVVNAYRTLESELEDMDTTRALLLEEDDETMKQDLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + + LL D + I+E+ G GG+E+ + L RMY+RY Sbjct: 61 QSVQDFKNELDQ-----FELQLLLDGPYDANNAIMELHPGAGGTESQDWTNMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + VE+ D+ G K + + G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEQKGFNVEIADYLPGDEAGVKSVTLIVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ ++DI +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 SFASCDVIPQFNNTEIEIDINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKTLKSKLYQLKIEEQEQEMAEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N K++ V+ G I I L + + Sbjct: 293 AMVKDHRTNEETGKVDAVMDGDIGPFIEAFLRSQMDQH 330 >gi|148267214|ref|YP_001246157.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus JH9] gi|151220935|ref|YP_001331757.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus str. Newman] gi|221141228|ref|ZP_03565721.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253315812|ref|ZP_04839025.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|253732798|ref|ZP_04866963.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus TCH130] gi|258418241|ref|ZP_05682506.1| peptide chain release factor 2 [Staphylococcus aureus A9763] gi|258430733|ref|ZP_05688445.1| peptide chain release factor 2 [Staphylococcus aureus A9299] gi|258440954|ref|ZP_05690789.1| peptide chain release factor 2 [Staphylococcus aureus A8115] gi|258445784|ref|ZP_05693961.1| peptide chain release factor 2 [Staphylococcus aureus A6300] gi|258449595|ref|ZP_05697697.1| peptide chain release factor 2 [Staphylococcus aureus A6224] gi|258452962|ref|ZP_05700956.1| peptide chain release factor 2 [Staphylococcus aureus A5948] gi|258453995|ref|ZP_05701967.1| peptide chain release factor 2 [Staphylococcus aureus A5937] gi|269202375|ref|YP_003281644.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ED98] gi|282895050|ref|ZP_06303271.1| peptide chain release factor 2 [Staphylococcus aureus A8117] gi|282916096|ref|ZP_06323859.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus D139] gi|282922051|ref|ZP_06329748.1| peptide chain release factor 2 [Staphylococcus aureus A9765] gi|282926620|ref|ZP_06334250.1| peptide chain release factor 2 [Staphylococcus aureus A10102] gi|283769917|ref|ZP_06342809.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus H19] gi|297208519|ref|ZP_06924948.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300912611|ref|ZP_07130054.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus TCH70] gi|304381625|ref|ZP_07364275.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|147740283|gb|ABQ48581.1| bacterial peptide chain release factor 2 (bRF-2) [Staphylococcus aureus subsp. aureus JH9] gi|150373735|dbj|BAF66995.1| peptide chain release factor 2, programmed frameshift [Staphylococcus aureus subsp. aureus str. Newman] gi|253729163|gb|EES97892.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus TCH130] gi|257839034|gb|EEV63513.1| peptide chain release factor 2 [Staphylococcus aureus A9763] gi|257849405|gb|EEV73375.1| peptide chain release factor 2 [Staphylococcus aureus A9299] gi|257852468|gb|EEV76389.1| peptide chain release factor 2 [Staphylococcus aureus A8115] gi|257855360|gb|EEV78298.1| peptide chain release factor 2 [Staphylococcus aureus A6300] gi|257857103|gb|EEV80002.1| peptide chain release factor 2 [Staphylococcus aureus A6224] gi|257859473|gb|EEV82327.1| peptide chain release factor 2 [Staphylococcus aureus A5948] gi|257863860|gb|EEV86616.1| peptide chain release factor 2 [Staphylococcus aureus A5937] gi|262074665|gb|ACY10638.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus ED98] gi|282320044|gb|EFB50391.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus D139] gi|282591513|gb|EFB96585.1| peptide chain release factor 2 [Staphylococcus aureus A10102] gi|282593709|gb|EFB98701.1| peptide chain release factor 2 [Staphylococcus aureus A9765] gi|282762546|gb|EFC02685.1| peptide chain release factor 2 [Staphylococcus aureus A8117] gi|283460064|gb|EFC07154.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus H19] gi|296886774|gb|EFH25678.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300886857|gb|EFK82059.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus TCH70] gi|302332463|gb|ADL22656.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus JKD6159] gi|302750651|gb|ADL64828.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339988|gb|EFM05932.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|315129439|gb|EFT85432.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus CGS03] gi|315196430|gb|EFU26781.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus CGS01] gi|320139911|gb|EFW31772.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MRSA131] gi|323438713|gb|EGA96454.1| peptide chain release factor 2 [Staphylococcus aureus O11] gi|329723780|gb|EGG60308.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 21189] gi|329724575|gb|EGG61082.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 21172] gi|329729572|gb|EGG65973.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 21193] Length = 331 Score = 216 bits (551), Expect = 3e-54, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 326 >gi|290890028|ref|ZP_06553113.1| hypothetical protein AWRIB429_0503 [Oenococcus oeni AWRIB429] gi|290480375|gb|EFD89014.1| hypothetical protein AWRIB429_0503 [Oenococcus oeni AWRIB429] Length = 372 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L AE E +MS+ D + + + ++ + ++ +DL + Sbjct: 25 DLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRRDSFLSLQKSVEDLTAMAE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + D+ IEK ++LE LL + D + ILEI G GG+E+ Sbjct: 85 LLSEEDD-ADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDS-NNAILEIHPGEGGTESTD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A +KVEV D G I G + ++ E GVHR R Sbjct: 143 WASNLYRMYTRWAQAHDFKVEVTDYQTGDVAGIDSATLRIIGHNAYGFLRSEKGVHRFVR 202 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + +++GR HTS ++ V+P + EI+++I +D+++D R+ G+GGQ+VN +AVR Sbjct: 203 ISPFDSAGRRHTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +THIPTGI+V + E++Q+ NR AMK+L+A+LY+ E ++ E + KL + G Sbjct: 263 LTHIPTGIVVASQVERTQYGNRDIAMKMLKAKLYEREEQKREEEHAKLSGTKLDVAWG-- 320 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F R + D R + V+ G +D IN L ++ Sbjct: 321 -SQIRSYVFQPYRMVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLSQK 369 >gi|116490620|ref|YP_810164.1| peptide chain release factor 2 [Oenococcus oeni PSU-1] gi|122277196|sp|Q04GC3|RF2_OENOB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|116091345|gb|ABJ56499.1| bacterial peptide chain release factor 2 (bRF-2) [Oenococcus oeni PSU-1] Length = 372 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 177/350 (50%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L AE E +MS+ D + + + ++ + ++ +DL + Sbjct: 25 DLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRRDSFLSLQKSVEDLTAMAE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + D+ IEK ++LE LL + D + ILEI G GG+E+ Sbjct: 85 LLSEEDD-ADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDS-NNAILEIHPGEGGTESTD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A +KVEV D G I G + ++ E GVHR R Sbjct: 143 WASNLYRMYTRWAQAHDFKVEVTDYQTGDVAGIDSATLRIIGHNAYGFLRSEKGVHRFVR 202 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + +++GR HTS ++ V+P + EI+++I +D+++D R+ G+GGQ+VN +AVR Sbjct: 203 ISPFDSAGRRHTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +THIPTGI+V + E++Q+ NR AMK+L+A+LY+ E ++ E + KL + G Sbjct: 263 LTHIPTGIVVASQVERTQYGNRDIAMKMLKAKLYEQEEQKREEEHAKLSGTKLDVAWG-- 320 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F R + D R + V+ G +D IN L ++ Sbjct: 321 -SQIRSYVFQPYRMVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLSQK 369 >gi|294102045|ref|YP_003553903.1| hypothetical protein Amico_1055 [Aminobacterium colombiense DSM 12261] gi|293617025|gb|ADE57179.1| hypothetical protein Amico_1055 [Aminobacterium colombiense DSM 12261] Length = 368 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 103/348 (29%), Positives = 173/348 (49%), Gaps = 15/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L+ + E+E + + D K+T+E A + + ++ + + + Sbjct: 25 DLPILEIKIQELEEKTLKPDFWGSDEARKVTQELARYQDKLDSWKKIAEDYEDLEIIEEM 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D Q ++ + L + D + I+ + AG+GG ++ Sbjct: 85 LKEEEDRELQKDFEQKAFSLKKEI-----ERQQLIELLSEDYDQGNAIVSVHAGSGGLDS 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+ ++V+VL + +GG + + G + +K E GVHR+ Sbjct: 140 QDWAEMLYRMYARWMEQNDFRVKVLDLIKDSEGGISNVTLLVEGSYAYGYLKSEKGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++GR HTS A+V V + D++I ED+RIDT R+SG+GGQHVN TDSAV Sbjct: 200 VRISPFDSAGRRHTSFASVDIVPELPEDEDIEIRTEDLRIDTYRSSGAGGQHVNMTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGD 301 RITH P+GI+V +E+SQH N+ AM+VL+++LY+ + NE K +I G Sbjct: 260 RITHFPSGIVVSCQNERSQHMNKAVAMQVLKSKLYERAIEERRNEMDTIIGEKKEISWG- 318 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y + DHR ++ VL G IDD I L + Sbjct: 319 --SQIRSYVLHPYTLVKDHRTGEETGNVQAVLDGDIDDFIMAYLRWKK 364 >gi|308235215|ref|ZP_07665952.1| peptide chain release factor 2 [Gardnerella vaginalis ATCC 14018] gi|311114816|ref|YP_003986037.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019] gi|310946310|gb|ADP39014.1| peptide chain release factor RF2 [Gardnerella vaginalis ATCC 14019] Length = 380 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 101/355 (28%), Positives = 170/355 (47%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK A++E + SE D + + +S S++ +Q +D T+I Sbjct: 25 DVNSLKTAIADLEKQASEPGLWDDSDHAQQVTSKLSAAQSQLKRLQAVEQRIEDTKTLIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + +++ + +++ L D ++ ++ IR+G GG +AA Sbjct: 85 LGQEEEDADSMSEAQEELGSIAHEL--DDMEVQTLLDGEYDARAAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K +++ +S ++ G K + + R+ E G HR+ R Sbjct: 143 FAQMLLRMYLRWAERNGYKTKMMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRMVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR T + V V+P A +DIP DIR+DT +ASG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTGFSAVEVIPLVEATDHIDIPDSDIRVDTFQASGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 TH+PTG++V+ E+SQ QNR AM VL++RL ++ E +A +K G Sbjct: 263 THLPTGLVVSMQDERSQIQNRAAAMAVLQSRLLVLK----HAEEAAKKKELAGDIKASWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID I + + + + E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDGFIEAGIRWRHEQRVAAKKE 373 >gi|19552028|ref|NP_600030.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC 13032] gi|62389691|ref|YP_225093.1| peptide chain release factor 2 [Corynebacterium glutamicum ATCC 13032] gi|145294961|ref|YP_001137782.1| peptide chain release factor 2 [Corynebacterium glutamicum R] gi|24638152|sp|Q8NS78|RF2_CORGL RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|166223627|sp|A4QCD3|RF2_CORGB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|21323567|dbj|BAB98194.1| Protein chain release factor B [Corynebacterium glutamicum ATCC 13032] gi|41325026|emb|CAF19507.1| PEPTIDE CHAIN RELEASE FACTOR 2 [Corynebacterium glutamicum ATCC 13032] gi|140844881|dbj|BAF53880.1| hypothetical protein [Corynebacterium glutamicum R] Length = 368 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 171/344 (49%), Gaps = 9/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ +R E+E + ++ D + + +S + +++ +Q +DL ++ Sbjct: 26 QEMSDRVRELEAQAADPSLWDDPDHAQQVTSELSHVQAELRKITDLRQRIEDLPIMVELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + D ++R L + + + D + ++ IR+G GG +AA + Sbjct: 86 EEE----DGDTSIAEEELADLRSLIDALEVKTMLSGEYDAREAVINIRSGAGGVDAADWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV++ S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 142 EMLMRMYTRWAEKNGHKVDIYDISYAEEAGIKSATFVVHGDYMYGQLSVEQGAHRLVRIS 201 Query: 190 ATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP + +DIP D+R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 202 PFDNQGRRQTSFAEVEVLPVVEKVDSIDIPDADVRVDVYRSSGPGGQSVNTTDSAVRLTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 262 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAEMDAL--GAGGNASWGNQMR 319 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y + + D R N + + VL G ID ++ + A+ Sbjct: 320 SYVLHPYQMVKDLRTNFEVNDPQKVLDGDIDGLLEAGIRWRMAE 363 >gi|297805172|ref|XP_002870470.1| HCF109 [Arabidopsis lyrata subsp. lyrata] gi|297316306|gb|EFH46729.1| HCF109 [Arabidopsis lyrata subsp. lyrata] Length = 453 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 165/351 (47%), Gaps = 5/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + +++ D K E +A++ + ++ + + K +D T++ Sbjct: 101 LEQLEQEIANLESKATDTSFWDDRTKAQETLSALNDLKDRMRLLSEFKTMVEDAETIVKL 160 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E + I KE+ + + L D + ++ I AG GG++A + Sbjct: 161 TEEMDSTDVSLLEEAMGIIKELNKSLDRFELTQLLSGPYDKEGAVVYITAGAGGTDAQDW 220 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K +V+ S+ ++ G K I GR + + E G HR+ R Sbjct: 221 ADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQ 280 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + G TS + V V+P + ++IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 281 SPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRI 340 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+ RA+ L+A+L + ++ A E R + + ++ Sbjct: 341 THIPTGVAVRCTEERSQLANKTRALIRLKAKLLVIAEEQRATEIKEIRGDAVK-AEWGQQ 399 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IR Y F + + D R + V+ G +D I L + SA Sbjct: 400 IRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMASA 450 >gi|330719765|gb|EGG98281.1| Peptide chain release factor [gamma proteobacterium IMCC2047] Length = 365 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 171/329 (51%), Gaps = 15/329 (4%) Query: 25 ESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 +S D L +E + + I++ I D + +L + + + + + +++ Sbjct: 43 DSAVWDEPERAQALGKERSQLENIVATIDRLDSGISDGHELLAMAIEEDDEDTVNEVSAE 102 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 + + + + + D+ S L+I+AG+GG+EA + L RMY R+ Sbjct: 103 IETLDAQLAK-----LEFRRMFSGEMDENSAFLDIQAGSGGTEAQDWAEMLLRMYLRWGE 157 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + +KVE++ S D G K G F ++ E+GVHR+ R ++ R HTS Sbjct: 158 QKGFKVELMEVSAGDVAGIKGATIKFEGEYAFGWLRTETGVHRLVRKSPFDSGSRRHTSF 217 Query: 202 ATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 + V V PE + ++DI D+RIDT RASG+GGQHVN TDSAVRITH PT ++V S+ Sbjct: 218 SAVFVSPEIDDNVEIDINPADLRIDTYRASGAGGQHVNKTDSAVRITHEPTNVVVQCQSQ 277 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRIT 317 +SQHQN+ AMK LRA+LY++E ++ + + + K IG G +IR+Y RI Sbjct: 278 RSQHQNKDFAMKQLRAKLYELEMQKRNDAAQAQEDNKADIGWG---SQIRSYVLDSSRIK 334 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R N+ + VL G +D I L A Sbjct: 335 DLRTNVETSNTQAVLDGGLDMFIEASLKA 363 >gi|152971837|ref|YP_001336946.1| peptide chain release factor 2 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238896431|ref|YP_002921169.1| peptide chain release factor 2 [Klebsiella pneumoniae NTUH-K2044] gi|262042532|ref|ZP_06015689.1| peptide chain release factor 2 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330010996|ref|ZP_08306940.1| peptide chain release factor 2 [Klebsiella sp. MS 92-3] gi|150956686|gb|ABR78716.1| peptide chain release factor 2 [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548751|dbj|BAH65102.1| peptide chain release factor 2 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259040092|gb|EEW41206.1| peptide chain release factor 2 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328534333|gb|EGF60944.1| peptide chain release factor 2 [Klebsiella sp. MS 92-3] Length = 320 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 104/324 (32%), Positives = 172/324 (53%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E +++ I+ + Q ++ L + + + + + A Sbjct: 3 NEPERAQALGKERSSLEAIVDTLDQMSQGLEDVAGLLDLAVEADDEETFNEAV-----AE 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + E ++ + + D C L+I+AG+GG+EA + L RMY R+A R +K Sbjct: 58 LDTLEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLMRMYLRWAEARGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S+ + G K + I G + ++ E+GVHR+ R ++ GR HTS ++ V Sbjct: 118 TEIIEESEGEVAGIKSVTIKIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE +ID++I D+RID RASG+GGQHVN T+SAVRITHIPTG++ +++SQH+ Sbjct: 178 YPEVEDDIDIEINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGLVTQCQNDRSQHK 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK ++A+LY++E ++ E+ + K IG G +IR+Y RI D R Sbjct: 238 NKDQAMKQMKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D I L A Sbjct: 295 VETRNTQAVLDGSLDQFIEASLKA 318 >gi|314933063|ref|ZP_07840429.1| peptide chain release factor 2 [Staphylococcus caprae C87] gi|313654382|gb|EFS18138.1| peptide chain release factor 2 [Staphylococcus caprae C87] Length = 333 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 164/339 (48%), Gaps = 17/339 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M++ + K E A+ I++ + + ++ + + +L Sbjct: 1 MMADPDFWNDQSKAQEIIDKNNALKSIVNGYRDLANEVDDMSATRELLQEEYDEDMKEEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + + ++ ++ LL D + I E+ G GG+E+ + L RMY+R Sbjct: 61 E-----SDVIQFKDKMDQFELQLLLDGPHDANNAIFELHPGAGGTESQDWASMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + VE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEQNGFNVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY + E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQQKLDEQEREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRKEMDNQ 331 >gi|299472049|emb|CBN80132.1| conserved unknown protein [Ectocarpus siliculosus] Length = 466 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 8/357 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ S I L+ R AE++ +S+ D K + + + SK+ E Q Sbjct: 105 LLLSSRLDIPALEARLAELDALVSDPKLYDDSTKAGKIVKERAKVESKLENVKSLNSELQ 164 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + E L + + LL +C LE++AG Sbjct: 165 SWREMYEMASLEEEGDLLTECIEKVGALRKQAERARAETLLSLGGELSASNCYLELQAGA 224 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ + L++MY R+A + + ++ L+SS D+ G + ++ + G + ++ E+ Sbjct: 225 GGTESHDWTSMLYKMYTRWAETKAFTLQPLNSSPGDEAGLRSVMVFVEGESAYGWLRSEA 284 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-----IPLEDIRIDTMRASGSGGQ 235 GVHR+ R + +GR HTS + V V PEA D IP +D+++DTMRA G+GGQ Sbjct: 285 GVHRLVRNSPYDPNGRRHTSFSQVRVFPEAGGESGDAAKVEIPAKDLKVDTMRAQGAGGQ 344 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVR+TH+PTG++ + S++SQH+NR AM+ LRA+++ + + +R+ Sbjct: 345 HVNTTDSAVRLTHLPTGLVALSQSDRSQHKNRENAMRALRAKIFQRKEEERHAKRNEYAA 404 Query: 295 LQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G +IR+Y S + + DHR + VL G +D I+ L A +K Sbjct: 405 GL-GDNAFGNQIRSYVLSPYQMVKDHRTGKQEGDVSGVLDGGLDGFIDAALIAEHSK 460 >gi|227505562|ref|ZP_03935611.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940] gi|227197859|gb|EEI77907.1| peptide chain release factor 2 [Corynebacterium striatum ATCC 6940] Length = 370 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 160/351 (45%), Gaps = 10/351 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L + E+E + + D + +A+S +KI + + D+ + Sbjct: 26 AALAEQVRELEAQAGDPSLWDDPAHAQQVTSALSAAQAKIRKLESLRSRVDDMPVMFELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + + D + ++ IR+G GG +AA + Sbjct: 86 EEEGDTALADDELEDLGAAIEA-----LEVTTMLSGEYDPREAVINIRSGAGGVDAADWA 140 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV+V S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 141 EMLMRMYTRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRIS 200 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP +D+P D+R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 201 PFDNQGRRQTSFAEVEVLPVVEQTDHIDVPDGDVRVDVYRSSGPGGQSVNTTDSAVRLTH 260 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 261 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 318 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +Y + + D R N + VL G +D + + A+ + E Sbjct: 319 SYVLHPYQMVKDLRTNYEVGDPSKVLDGDLDGFLEAGIRWRMAEAQKAEKE 369 >gi|148985895|ref|ZP_01818989.1| peptide chain release factor 2 [Streptococcus pneumoniae SP3-BS71] gi|148989834|ref|ZP_01821128.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73] gi|149007634|ref|ZP_01831251.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74] gi|149020396|ref|ZP_01835288.1| peptide chain release factor 2 [Streptococcus pneumoniae SP23-BS72] gi|147760789|gb|EDK67760.1| peptide chain release factor 2 [Streptococcus pneumoniae SP18-BS74] gi|147922041|gb|EDK73165.1| peptide chain release factor 2 [Streptococcus pneumoniae SP3-BS71] gi|147924776|gb|EDK75860.1| peptide chain release factor 2 [Streptococcus pneumoniae SP6-BS73] gi|147930698|gb|EDK81680.1| peptide chain release factor 2 [Streptococcus pneumoniae SP23-BS72] gi|301799772|emb|CBW32341.1| peptide chain release factor 2 [Streptococcus pneumoniae OXC141] gi|332077171|gb|EGI87633.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17545] gi|332203909|gb|EGJ17976.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47368] Length = 325 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|257424874|ref|ZP_05601301.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257427542|ref|ZP_05603941.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257430173|ref|ZP_05606557.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 68-397] gi|257432874|ref|ZP_05609234.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus E1410] gi|257435778|ref|ZP_05611826.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus M876] gi|282913594|ref|ZP_06321383.1| peptide chain release factor 2, programmed [Staphylococcus aureus subsp. aureus M899] gi|282918547|ref|ZP_06326284.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C427] gi|282923513|ref|ZP_06331193.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C101] gi|283957586|ref|ZP_06375039.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|293500640|ref|ZP_06666491.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 58-424] gi|293509587|ref|ZP_06668298.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus M809] gi|293524173|ref|ZP_06670860.1| peptide chain release factor 2, programmed [Staphylococcus aureus subsp. aureus M1015] gi|297590314|ref|ZP_06948953.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus MN8] gi|257272444|gb|EEV04567.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 55/2053] gi|257275735|gb|EEV07208.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 65-1322] gi|257279370|gb|EEV09971.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 68-397] gi|257282289|gb|EEV12424.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus E1410] gi|257284969|gb|EEV15088.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus M876] gi|282314381|gb|EFB44771.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C101] gi|282317681|gb|EFB48053.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C427] gi|282322626|gb|EFB52948.1| peptide chain release factor 2, programmed [Staphylococcus aureus subsp. aureus M899] gi|283791037|gb|EFC29852.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus A017934/97] gi|290921136|gb|EFD98197.1| peptide chain release factor 2, programmed [Staphylococcus aureus subsp. aureus M1015] gi|291095645|gb|EFE25906.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 58-424] gi|291467684|gb|EFF10199.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus M809] gi|297576613|gb|EFH95328.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus MN8] gi|312438819|gb|ADQ77890.1| peptide chain release factor RF2 [Staphylococcus aureus subsp. aureus TCH60] Length = 331 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 167/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 326 >gi|331266735|ref|YP_004326365.1| peptide chain release factor 2 [Streptococcus oralis Uo5] gi|326683407|emb|CBZ01025.1| peptide chain release factor 2 [Streptococcus oralis Uo5] Length = 325 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 182/330 (55%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFRKMEELQDEVEILLDFLAEDESVHDELVEQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 LTELDKMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|222530070|ref|YP_002573952.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM 6725] gi|222456917|gb|ACM61179.1| hypothetical protein Athe_2103 [Caldicellulosiruptor bescii DSM 6725] Length = 372 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 178/353 (50%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ +E S+ I I KI + + + +DL Sbjct: 21 MGFLFDIDGLESELKSLETETSKPEFWQDIENSQRILQKIKRIKDKIERFQKLYSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + ++E I E + E +I L D + IL I AG GG Sbjct: 81 KVLTELSIEEGNHEMSEELEKELISLERKIDEFKIEIL--LNGPYDKNNAILSIHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+AA + +KVE L ++ G K + I G + +K E GV Sbjct: 139 TEAQDWAEMLLRMYTRWAAKKGYKVETLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT R+SG+GGQHVN T+ Sbjct: 199 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 259 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIG 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 319 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 368 >gi|192291110|ref|YP_001991715.1| hypothetical protein Rpal_2731 [Rhodopseudomonas palustris TIE-1] gi|192284859|gb|ACF01240.1| conserved hypothetical protein [Rhodopseudomonas palustris TIE-1] Length = 376 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 102/338 (30%), Positives = 167/338 (49%), Gaps = 10/338 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R AE+ + + K + + + ++ + ++E D +I ++E Sbjct: 31 RLAELNKLAEDPDLWNDPQKAQKLMQERTSLEDSLTGIGKVERELTDNIEMIEL--GEAE 88 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E K +++ L D LE+ AG GG+E+ + L R Sbjct: 89 GDEGIVKEAEDALKALKKEVARRELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A +K+E L S+ ++ G K ISG + +K E+GVHR+ R+ +++ Sbjct: 149 MYVRWAEKHGFKIEYLEESEGEEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSN 208 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS ++V + P +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ Sbjct: 209 ARRHTSFSSVQIFPVIDNSIKIDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGV 268 Query: 254 -MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYN 310 +V + +SQH+NR +A +LRARLY++E K+ K +IG G +IR+Y Sbjct: 269 AVVCQAGRSQHKNRAQAWDMLRARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYV 325 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D+ + L Sbjct: 326 LQPYQMVKDLRTGVQTSDTAGVLDGDLDEFMAATLAQR 363 >gi|167628822|ref|YP_001679321.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1] gi|167591562|gb|ABZ83310.1| peptide chain release factor 2 [Heliobacterium modesticaldum Ice1] Length = 333 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 111/330 (33%), Positives = 177/330 (53%), Gaps = 10/330 (3%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLA 79 + E D + + ++ + K+ Y + + +DL + +G +D+EI Sbjct: 1 MIQEPGFWDDTERAQKTMQELTGLKDKVKAYRDLRSQWEDLCVLRELGAEENDAEILAEI 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + I E+ + LL D + +L + AG GG+EA + L RMY R+ Sbjct: 61 EAGIQTITAELD----RWHLELLLNGPYDRNNALLTLHAGAGGTEAMDWNEMLLRMYIRW 116 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 R +KVE+L S D+ G K ++ G + +K E GVHR+ R+ ++SGR HT Sbjct: 117 GEKRGYKVELLDSLPGDEAGIKSATLSVVGENAYGYLKGEMGVHRLVRISPFDSSGRRHT 176 Query: 200 SAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE ++ ++ I ED+++DT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 177 SFASLEVLPEVSDGAEIQIRPEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVVACQ 236 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 SE+SQ QNR AM++L+A+L++ +R+ E + K +IR+Y F + Sbjct: 237 SERSQIQNRATAMRMLQAKLFERQRQEQEAEVNRL-KGDQQDIAFGSQIRSYVFHPYNLV 295 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + + V+ G +D+ I+ L Sbjct: 296 KDHRTNTEVGNVHAVMDGELDEFISAYLVW 325 >gi|262049538|ref|ZP_06022408.1| peptide chain release factor 2 [Staphylococcus aureus D30] gi|259162374|gb|EEW46946.1| peptide chain release factor 2 [Staphylococcus aureus D30] Length = 330 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 167/333 (50%), Gaps = 17/333 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D K + A+ I++ + + ++ + + L Sbjct: 1 MAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEYLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + K LL D + ILE+ G GG+E+ + LFRMY+RY Sbjct: 61 QEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 SMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 325 >gi|56416847|ref|YP_153921.1| peptide chain release factor 2 [Anaplasma marginale str. St. Maries] gi|56388079|gb|AAV86666.1| peptide chain release factor 2 [Anaplasma marginale str. St. Maries] Length = 338 Score = 216 bits (550), Expect = 4e-54, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 177/346 (51%), Gaps = 20/346 (5%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E++ R S + D KL E A + +++ +++ E +L + + +S+ Sbjct: 2 EELDSRCSSASLWDDQENAKKLLSERARVEEVLASFRALEKEYAECVELLDLADESDSE- 60 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + + ++ ++ + D C L IR G GG+E+ + L Sbjct: 61 -----FLDGLWSALTQLERRVSQKKAECMFSGEADGSGCFLVIRPGAGGTESNDWAAMLL 115 Query: 134 RMYERYA-ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A + E++ D + G K + ISG G + K ESGVHR+ R+ + Sbjct: 116 RMYVRWAGTFHGFTTEIVDKIDGEAAGLKSVTVKISGNGAYGWAKTESGVHRLVRISPFD 175 Query: 193 ASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 +S R HTS A+V V P +ID++I +D+RIDT RASG+GGQHVN T+SAVRITH+P+ Sbjct: 176 SSSRRHTSFASVEVSPIADDKIDIEILEKDLRIDTYRASGAGGQHVNKTESAVRITHMPS 235 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRT 308 GI+V + +SQHQNR A +LR+RLY++E + + + + + IG G +IR+ Sbjct: 236 GIVVQCQTSRSQHQNRAEAYSLLRSRLYEMELQEKEKKMAQEHDSRCDIGWG---HQIRS 292 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH--QAKM 351 Y R + D R ++ VL G +D I LT QA+ Sbjct: 293 YVMHPYRMVKDLRTGHETGDVDAVLDGDLDKFIAAALTYKLSQAQK 338 >gi|77164311|ref|YP_342836.1| peptide chain release factor 2 [Nitrosococcus oceani ATCC 19707] gi|254433270|ref|ZP_05046778.1| peptide chain release factor 2 [Nitrosococcus oceani AFC27] gi|76882625|gb|ABA57306.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrosococcus oceani ATCC 19707] gi|207089603|gb|EDZ66874.1| peptide chain release factor 2 [Nitrosococcus oceani AFC27] Length = 331 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 106/335 (31%), Positives = 174/335 (51%), Gaps = 15/335 (4%) Query: 18 EIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E++ ++ D +L +E A + +++ ++ + + ++L + + + Sbjct: 2 EVDRELAVPSVWDEPERAQQLGQERAQLQSVVAPLAELGGEIIQVRELFELAMEEGDEDT 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +++ +A + + ++ + + D + L+I+AG+GG+EA + L R Sbjct: 62 AQEI-----IAELDVVEQRLAKLEFQRMFAGEMDPNNAYLDIQAGSGGTEAQDWANMLLR 116 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+ +K E+ S+ + G K G F ++ E+GVHR+ R ++ Sbjct: 117 MYLRWGEKHSFKTELTEVSEGEVAGIKSAAIRFEGEYAFGWLRTETGVHRLVRKSPFDSG 176 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V V PE E D++I D+RIDT RASG+GGQHVN TDSAVRITH+P+ + Sbjct: 177 NRRHTSFASVFVYPEVDERIDIEINPADLRIDTYRASGAGGQHVNRTDSAVRITHLPSSL 236 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTYN 310 +V SE+SQHQN+ AM LRA+LY++E + E+ + K IG G +IR Y Sbjct: 237 VVQCQSERSQHQNKAHAMAQLRAKLYELEMRNRQAEKQAAEEAKADIGWG---SQIRNYV 293 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q RI D R + + + VL G +D I L Sbjct: 294 LDQSRIKDLRTGIEVGNTQGVLDGDLDSFIEASLK 328 >gi|152967725|ref|YP_001363509.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216] gi|226726318|sp|A6WEK6|RF2_KINRD RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|151362242|gb|ABS05245.1| peptide chain release factor 2 [Kineococcus radiotolerans SRS30216] Length = 367 Score = 216 bits (549), Expect = 4e-54, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 162/345 (46%), Gaps = 7/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++ + D + +S + +++ ++ DL ++ Sbjct: 24 DLDALRKELADLNDEAAAPSLWDDPEHAQTVTSRLSAVQAELDRIEKMGGRIDDLEVLVE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E + E E++E ++ L D + I+ IR+ GG +AA Sbjct: 84 LSED--EHDADSLAEAETELNEVKEQLAQLEVRTLLSGEYDSREAIVTIRSEAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A R +K EV +S ++ G K ++ + + E G HR+ R Sbjct: 142 FAEMLMRMYLRWAERRGYKSEVYDTSYAEEAGIKSATFKVAAPYAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP A VD+P ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAGVEVLPVVAETDHVDVPENEVRVDVYRSSGPGGQSVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +EKSQ QN+ AM+VL+A+L + RK E A + SG + Sbjct: 262 THLPTGIVVTCQNEKSQLQNKAAAMRVLQAKLLEKARKDRQAELDALKGDD--SGSWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y + + D R N + + G ID + + + Sbjct: 320 MRSYVLHPYQMVKDLRTNYEVGNTSSIFDGEIDSFLEAGIRWRKQ 364 >gi|297159934|gb|ADI09646.1| peptide chain release factor 2 [Streptomyces bingchenggensis BCW-1] Length = 383 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 158/346 (45%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ A +E + + D + + +S + ++ ++ + DL + Sbjct: 38 DLDKMRADIAVLEEQAAAPSLWDDPENAQKITSRLSYLQGQLRKAEELRSRIDDLEVLFE 97 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ + A+ E + L D + ++ IRA GG +AA Sbjct: 98 LADAEDDADARAEAVAELDSVRKAVDE--MEVRTLLSGEYDSREALVNIRAEAGGVDAAD 155 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K EV +S ++ G K + + + E G HR+ R Sbjct: 156 FAEQLQRMYLRWAERHGYKTEVYDTSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVR 215 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++RID R+SG GGQ VNTTDSAVR+ Sbjct: 216 ISPFDNQGRRQTSFAGVEVLPVVEKTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRL 275 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G + Sbjct: 276 THIPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWGNQ 333 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G +D + + + + Sbjct: 334 MRSYVLHPYQMVKDLRTEFEVGNPQAVLDGELDGFLEAGIRWRKQQ 379 >gi|323441389|gb|EGA99047.1| peptide chain release factor 2 [Staphylococcus aureus O46] Length = 331 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 168/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + ++VE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFEVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 326 >gi|227552028|ref|ZP_03982077.1| peptide chain release factor 2 [Enterococcus faecium TX1330] gi|257879881|ref|ZP_05659534.1| peptide chain release factor 2 [Enterococcus faecium 1,230,933] gi|257882725|ref|ZP_05662378.1| peptide chain release factor 2 [Enterococcus faecium 1,231,502] gi|257884039|ref|ZP_05663692.1| peptide chain release factor 2 [Enterococcus faecium 1,231,501] gi|257890396|ref|ZP_05670049.1| peptide chain release factor 2 [Enterococcus faecium 1,231,410] gi|257895380|ref|ZP_05675033.1| peptide chain release factor 2 [Enterococcus faecium Com12] gi|257897991|ref|ZP_05677644.1| peptide chain release factor 2 [Enterococcus faecium Com15] gi|260559609|ref|ZP_05831789.1| peptide chain release factor 2 [Enterococcus faecium C68] gi|261208674|ref|ZP_05923111.1| peptide chain release factor 2 [Enterococcus faecium TC 6] gi|289566068|ref|ZP_06446505.1| peptide chain release factor 2 [Enterococcus faecium D344SRF] gi|293378249|ref|ZP_06624418.1| peptide chain release factor 2 [Enterococcus faecium PC4.1] gi|293556398|ref|ZP_06674979.1| peptide chain release factor 2 [Enterococcus faecium E1039] gi|293560376|ref|ZP_06676869.1| peptide chain release factor 2 [Enterococcus faecium E1162] gi|293568705|ref|ZP_06680020.1| peptide chain release factor 2 [Enterococcus faecium E1071] gi|293572408|ref|ZP_06683388.1| peptide chain release factor 2 [Enterococcus faecium E980] gi|294616268|ref|ZP_06696061.1| peptide chain release factor 2 [Enterococcus faecium E1636] gi|294617600|ref|ZP_06697230.1| peptide chain release factor 2 [Enterococcus faecium E1679] gi|294622340|ref|ZP_06701373.1| peptide chain release factor 2 [Enterococcus faecium U0317] gi|314939593|ref|ZP_07846820.1| peptide chain release factor 2 [Enterococcus faecium TX0133a04] gi|314941219|ref|ZP_07848115.1| peptide chain release factor 2 [Enterococcus faecium TX0133C] gi|314948616|ref|ZP_07851991.1| peptide chain release factor 2 [Enterococcus faecium TX0082] gi|314953358|ref|ZP_07856285.1| peptide chain release factor 2 [Enterococcus faecium TX0133A] gi|314993437|ref|ZP_07858802.1| peptide chain release factor 2 [Enterococcus faecium TX0133B] gi|314995786|ref|ZP_07860875.1| peptide chain release factor 2 [Enterococcus faecium TX0133a01] gi|227178781|gb|EEI59753.1| peptide chain release factor 2 [Enterococcus faecium TX1330] gi|257814109|gb|EEV42867.1| peptide chain release factor 2 [Enterococcus faecium 1,230,933] gi|257818383|gb|EEV45711.1| peptide chain release factor 2 [Enterococcus faecium 1,231,502] gi|257819877|gb|EEV47025.1| peptide chain release factor 2 [Enterococcus faecium 1,231,501] gi|257826756|gb|EEV53382.1| peptide chain release factor 2 [Enterococcus faecium 1,231,410] gi|257831945|gb|EEV58366.1| peptide chain release factor 2 [Enterococcus faecium Com12] gi|257835903|gb|EEV60977.1| peptide chain release factor 2 [Enterococcus faecium Com15] gi|260074277|gb|EEW62599.1| peptide chain release factor 2 [Enterococcus faecium C68] gi|260077176|gb|EEW64896.1| peptide chain release factor 2 [Enterococcus faecium TC 6] gi|289162175|gb|EFD10038.1| peptide chain release factor 2 [Enterococcus faecium D344SRF] gi|291588665|gb|EFF20498.1| peptide chain release factor 2 [Enterococcus faecium E1071] gi|291590782|gb|EFF22498.1| peptide chain release factor 2 [Enterococcus faecium E1636] gi|291596206|gb|EFF27469.1| peptide chain release factor 2 [Enterococcus faecium E1679] gi|291598167|gb|EFF29266.1| peptide chain release factor 2 [Enterococcus faecium U0317] gi|291601465|gb|EFF31736.1| peptide chain release factor 2 [Enterococcus faecium E1039] gi|291605664|gb|EFF35105.1| peptide chain release factor 2 [Enterococcus faecium E1162] gi|291607470|gb|EFF36812.1| peptide chain release factor 2 [Enterococcus faecium E980] gi|292643113|gb|EFF61254.1| peptide chain release factor 2 [Enterococcus faecium PC4.1] gi|313590058|gb|EFR68903.1| peptide chain release factor 2 [Enterococcus faecium TX0133a01] gi|313592102|gb|EFR70947.1| peptide chain release factor 2 [Enterococcus faecium TX0133B] gi|313594634|gb|EFR73479.1| peptide chain release factor 2 [Enterococcus faecium TX0133A] gi|313599943|gb|EFR78786.1| peptide chain release factor 2 [Enterococcus faecium TX0133C] gi|313641133|gb|EFS05713.1| peptide chain release factor 2 [Enterococcus faecium TX0133a04] gi|313644947|gb|EFS09527.1| peptide chain release factor 2 [Enterococcus faecium TX0082] Length = 327 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 170/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT---VIGDHNSDSEIRDLA 79 M+E D + + + + +E +++ ++ + + + Sbjct: 1 MAEPGFWDDSEAAQKVISENNANKETYDQFHSLAEELEEIELMVEMLQEEPDAAMQEEAE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E +L D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 -----TRINALDEKMKTYELSMLLDGPYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A ++VE L D+ G K + I G F +K E GVHR+ R+ +++ R HT Sbjct: 116 AEQHGYQVETLDYQAGDEAGIKSVTLLIKGHNAFGYLKSEKGVHRLVRISPFDSAKRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V+PE ID++I +D++IDT RASG+GGQH+N T+SAVRITH+PTG +V + Sbjct: 176 SFCSVDVMPELDETIDIEINPDDLKIDTYRASGAGGQHINKTESAVRITHLPTGTVVASQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +++SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G +IR+Y F Sbjct: 236 AQRSQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N+ ++ V+ G +D I+ L H Sbjct: 293 MVKDHRTNVETGNVQAVMDGDLDLFIDGYLKMH 325 >gi|223932890|ref|ZP_03624886.1| peptide chain release factor 2 [Streptococcus suis 89/1591] gi|330832393|ref|YP_004401218.1| peptide chain release factor 2 [Streptococcus suis ST3] gi|223898471|gb|EEF64836.1| peptide chain release factor 2 [Streptococcus suis 89/1591] gi|329306616|gb|AEB81032.1| peptide chain release factor 2 [Streptococcus suis ST3] Length = 325 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 99/330 (30%), Positives = 178/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + + + ++ + + + Q + ++ D +RD + Sbjct: 1 MTEPDFWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ ++K + E LL D D + ILEI G+GG+EA + L RMY+RY Sbjct: 61 LVELDKTMTAYE----MTLLLSDPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + VE L D+ G K + + +G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFIVETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+++I +++++DT R+ G+GGQ+VN + VR+THIPTGI+ S+ ++ Sbjct: 177 SVEVMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + +++ V+ G +D I+ L Sbjct: 294 DHRTGYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|254820379|ref|ZP_05225380.1| peptide chain release factor 2 [Mycobacterium intracellulare ATCC 13950] Length = 370 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 163/346 (47%), Gaps = 5/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E S+ D + + +S ++ ++ + DL + Sbjct: 24 DVDGLRARIEKLEREASDPQLWDDQTRAQRVTSELSHAQGELRRIEELRGRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + E A E A K ++ L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEGEGAAEALAEADAELKALQAEIEATEVRTLLSGEYDEREALVTIRSGAGGVDAAD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A K+ VE+ +S ++ G K + + + E G HR+ R Sbjct: 144 WAEMLMRMYIRWAEQHKYPVELFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 204 ISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRL 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS + Sbjct: 264 THVPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRSEERAELDAL-KGEGGS-SWGNQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + K Sbjct: 322 MRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 367 >gi|114764683|ref|ZP_01443868.1| peptide chain release factor 2 [Pelagibaca bermudensis HTCC2601] gi|114542883|gb|EAU45904.1| peptide chain release factor 2 [Roseovarius sp. HTCC2601] Length = 373 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 120/339 (35%), Positives = 166/339 (48%), Gaps = 6/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ + Y KQE D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDPQAAQKLMRDRQFLVDAMETYTSIKQELSDNVELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 D E K + E + L D LEI AG GG+EA + L R Sbjct: 91 --DEVVSEAEGALKALAEKAGQKELEALLDGEADGNDTFLEINAGAGGTEACDWAAMLQR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A R ++VE+ S + G K + ISG + +K ESGVHR+ R+ Sbjct: 149 MYVRWAEKRGYEVELQSEEAGAEAGIKSVAYKISGTNAYGWLKSESGVHRLVRISPFGK- 207 Query: 195 GRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G TS A+V V P I++D+ DIR+DT R+SG+GGQHVNTTDSAVRITH+PTGI Sbjct: 208 GTRETSFASVWVYPVVDDNIEIDVNPSDIRVDTYRSSGAGGQHVNTTDSAVRITHMPTGI 267 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R E +A + + G +IR+Y Sbjct: 268 VVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNAEINAQHEAK-GDAGWGNQIRSYVLQP 326 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D + L A Sbjct: 327 YQMVKDLRTSHETSDTQGVLDGDLDPFMAATLAQKAAGK 365 >gi|118586958|ref|ZP_01544390.1| peptide chain release factor 2 [Oenococcus oeni ATCC BAA-1163] gi|118432580|gb|EAV39314.1| peptide chain release factor 2 [Oenococcus oeni ATCC BAA-1163] Length = 378 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 177/350 (50%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L AE E +MS+ D + + + ++ + ++ +DL + Sbjct: 31 DLDALDASIAENEDKMSQPGFWDDQQSAQKIIDETNTLKNRRDSFLSLQKSVEDLTAMAE 90 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + D+ IEK ++LE LL + D + ILEI G GG+E+ Sbjct: 91 LLSEEDD-ADMHAELDTDIEKTEKDLEKYNLNQLLTEKYDS-NNAILEIHPGEGGTESTD 148 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + +L+RMY R+A +KVEV D G I G + ++ E GVHR R Sbjct: 149 WASNLYRMYTRWAQAHDFKVEVTDYQTGDVAGIDSATLRIIGHNAYGFLRSEKGVHRFVR 208 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + +++GR HTS ++ V+P + EI+++I +D+++D R+ G+GGQ+VN +AVR Sbjct: 209 ISPFDSAGRRHTSFVSIDVMPELDDDEIEIEIKPQDVKMDVYRSGGAGGQNVNKVSTAVR 268 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +THIPTG++V + E++Q+ NR AMK+L+A+LY+ E ++ E + KL + G Sbjct: 269 LTHIPTGLVVASQVERTQYGNRDIAMKMLKAKLYEREEQKREEEHAKLSGTKLDVAWG-- 326 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F R + D R + V+ G +D IN L ++ Sbjct: 327 -SQIRSYVFQPYRMVKDLRSGYETGDTDGVMDGNLDPFINAYLKWKLSQK 375 >gi|242129269|gb|ACS83718.1| peptide chain release factor 2 [uncultured bacterium AOCefta2] Length = 367 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 172/342 (50%), Gaps = 14/342 (4%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSE 74 +E + + + E ++ + + +D ++ D + D Sbjct: 31 ERLEAESAAGDFWNDNQRAQEHLKKLTALKRVVEPWDALDRDTSDSLEMAEMLKAEGDES 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + + + + + +LE + + + +D L I G GG+E+ + L R Sbjct: 91 MAPELEKQAAELAQRLNDLE----FKSMLSEAEDVSDSFLHIHPGAGGTESCDWANMLLR 146 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE++ + G + + G F +K ESGVHR+ R+ +A+ Sbjct: 147 MYTRWAERKGFKVELIDLQPGEGAGISRVTLAVRGEYAFGYLKAESGVHRLVRISPFDAN 206 Query: 195 GRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V +I+V+I +D+RIDT R+SG+GGQHVN TDSAVRITHIPT I Sbjct: 207 KRRHTSFASVHAYAEVTDDIEVEILDKDLRIDTYRSSGAGGQHVNVTDSAVRITHIPTKI 266 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYN 310 +V +E+SQH+N+ AMKVLR+RLY + +++ +++A K I G +IR+Y Sbjct: 267 VVSCQNERSQHKNKATAMKVLRSRLYQLYKEQREADQAAKAGEKKDISWG---SQIRSYV 323 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 F + + D R ++ + V+ G ID I L + K Sbjct: 324 FQPYQMVKDLRTDVETSNIGAVMDGAIDPFIEAFLRSQMGKQ 365 >gi|218961845|ref|YP_001741620.1| Protein chain release factor B [Candidatus Cloacamonas acidaminovorans] gi|167730502|emb|CAO81414.1| Protein chain release factor B [Candidatus Cloacamonas acidaminovorans] Length = 340 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 107/343 (31%), Positives = 176/343 (51%), Gaps = 16/343 (4%) Query: 18 EIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 E+E +M+ + K++++ + + + + D K E + T++ D + Sbjct: 4 ELEQKMNAPDFWEDQTQAKKISKQLSQLRDELEHLKKLDTVKGELETYLTLL-----DED 58 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 E ++ I+ + D D +L I +G GG+E+ + L R Sbjct: 59 FNAELLAEAVSELPRIQSFIEKAEIECYLNDKYDHNDALLTIHSGAGGTESQDWAEMLLR 118 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY +A + +++ S ++ G K + I G + +K E GVHR+ R+ A Sbjct: 119 MYAHWAEKNDYSFDIIDSLPGEEAGLKSVSVEIKGDYAYGMLKSEIGVHRLVRISPFNAQ 178 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G+ TS A+V V PE E +++I +D++IDT RASG+GGQ+VNTTDSAVRITH+PT I Sbjct: 179 GKRQTSFASVFVYPEFDEDLEIEINPKDLKIDTFRASGAGGQYVNTTDSAVRITHLPTNI 238 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYN 310 V +E+SQ QNR +AM +L++RLY ++ E+ N K +IG G+ +IR+Y Sbjct: 239 TVTCQNERSQMQNREKAMSILKSRLYQYYEEQREKEKKNLENSKTEIGWGN---QIRSYV 295 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 F + I DHR N ++ V+ G ++D I L + + I Sbjct: 296 FHPYQMIKDHRTNYETGNVDKVMNGDLNDFIYAWLKYNAHQRI 338 >gi|237751447|ref|ZP_04581927.1| peptide chain release factor 2 [Helicobacter bilis ATCC 43879] gi|229372813|gb|EEO23204.1| peptide chain release factor 2 [Helicobacter bilis ATCC 43879] Length = 367 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 190/341 (55%), Gaps = 14/341 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L+ R EI S + K +T+E I+S + + + ++L + Sbjct: 27 DSLQKRLDEINALESHQEFWNDAKKAGEITKEKRKCERILSTYTEMKAELDDARELFEIA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + DS +L V +++ I+++E E+ D + I+ I+ G GG+E+ Sbjct: 87 -ESEGDSSTLELLFENVESLQSHIQKVEIEVM----LSGEFDSTNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R++ R +KVE+L D ++ G K I G + K E+GVHR+ Sbjct: 142 DWASMLYRMYLRWSERRGFKVELLDYQDGEEAGIKGAAFIIKGENAYGYAKSENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V V PE + +ID++I +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDANAKRHTSFASVQVSPELSEDIDIEILDKDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ AMK+L+++LY++ER + + + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKATAMKMLQSKLYELERLKQSEGVANAEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y + ++ D R N + VL G IDD+I +L Sbjct: 319 QIRSYVLAPYQQVKDLRSNYATSDTDGVLDGDIDDLIESVL 359 >gi|322392321|ref|ZP_08065782.1| peptide chain release factor RF2 [Streptococcus peroris ATCC 700780] gi|321144856|gb|EFX40256.1| peptide chain release factor RF2 [Streptococcus peroris ATCC 700780] Length = 325 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + + ++ ++ D ++D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKHTYNTFHKMDELQDEVEILLDFLAEDESVKDELVEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 LDELAQMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + +++ V+ G +D I+ L Sbjct: 294 DHRTNFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|296533603|ref|ZP_06896168.1| peptide chain release factor RF2 [Roseomonas cervicalis ATCC 49957] gi|296266065|gb|EFH12125.1| peptide chain release factor RF2 [Roseomonas cervicalis ATCC 49957] Length = 376 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 172/348 (49%), Gaps = 10/348 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R E+ R + + + + + ++ + +Q+ +D +I ++ Sbjct: 30 RRLDEVNARAEDPTLWEKPDEAQAVMRERNRLADQVEGVKKLEQDVKDALELIELAEAEG 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + L D + C +E+ AG GG+EA + L Sbjct: 90 DGATADAAIADLHSFAAEAK--RREIESLLSGEADMRDCFVEVNAGAGGTEAQDWAQMLL 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY+R+A R +KV++ S+ + G K ++G + +K ESGVHR+ R+ +A Sbjct: 148 RMYQRWAEKRGYKVQLTEESEGEQAGIKSATIQVTGPNAYGWLKTESGVHRLVRISPFDA 207 Query: 194 SGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + R TS A+V V P +I+++I D++ DT RASG+GGQHVN T+S VR THIPTG Sbjct: 208 AARRQTSFASVYVFPVIDDKIEIEINPADLKTDTFRASGAGGQHVNKTESGVRFTHIPTG 267 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 I+ ++ ++SQH+NR+ AM++L+ARLY++E ++ + K IG G +IR+Y Sbjct: 268 IVAASTQDRSQHRNRVIAMEMLKARLYELELRKREEITAGIEAGKTDIGWG---HQIRSY 324 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 + + + D R N+ + VL G +DD + L + AS Sbjct: 325 VLAPYQLVKDLRTNVEKGNPDAVLDGELDDFMAAALASRVGAHRSEAS 372 >gi|258651861|ref|YP_003201017.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233] gi|258555086|gb|ACV78028.1| peptide chain release factor 2 [Nakamurella multipartita DSM 44233] Length = 369 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 162/352 (46%), Gaps = 10/352 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L E+ S + + + +S +++ +Q DL + Sbjct: 24 DVDRLARSIDELSEAASAPDLWNDQENAQKVTSRLSHAQAELKRIKDLRQRLDDLEVLFE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + AQ E+L ++KEI E L D++ ++ IR+ GG +AA Sbjct: 84 LGDEDPDTYLEAQQELLGLQKEIDAQEV----RTLLSGEYDEREALVTIRSEAGGVDAAD 139 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R++ + EV +S ++ G K + + + E G HR+ R Sbjct: 140 FAEMLMRMYLRWSERHGYNTEVYDTSYAEEAGIKSTTFQVKAPYAYGTLSVEQGTHRLVR 199 Query: 188 VPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V VD+ +D+R+D R+SG GGQ VNTTDSAVRI Sbjct: 200 ISPFDNQGRRQTSFAGVEVAPVVETSDHVDVDEKDLRVDVYRSSGPGGQGVNTTDSAVRI 259 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+++L + R+ A + G+ + Sbjct: 260 THLPTGIVVSCQNERSQIQNKASAMAVLQSKLLERRRQEERAVMDALKDTGNSWGN---Q 316 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +R+Y + + D R N + V G IDD I + ++ +AS Sbjct: 317 MRSYVLHPYQMVKDLRTNFEVGNPSAVFDGEIDDFIEAGIRWRRSTEAEAAS 368 >gi|118473158|ref|YP_886446.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2 155] gi|166225108|sp|A0QU58|RF2_MYCS2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|118174445|gb|ABK75341.1| peptide chain release factor 2 [Mycobacterium smegmatis str. MC2 155] Length = 368 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 162/349 (46%), Gaps = 13/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 + L+NR ++E S+ D + + + +S +++ + +Q DL + Sbjct: 24 DVDGLRNRIEQLEKDASDPNLWDDQTRAQKVTSDLSHAQNELRRVEGLRQRLDDLPVLYE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + E+ + E L D++ ++ IR+G GG + Sbjct: 84 LAAEAGGPDEVAEADAELAKLREDIEAM-----EVRTLLSGEYDEREAVVTIRSGAGGVD 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A + VE+ +S ++ G K + + + E G HR Sbjct: 139 AADWAEMLMRMYIRWAEKHDYPVEIFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R TS A V VLP ++IP DIR+D R+SG GGQ VNTTDSA Sbjct: 199 LVRISPFDNQSRRQTSFADVEVLPVVETTDHIEIPENDIRVDVYRSSGPGGQSVNTTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 259 VRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLERKRLEERAELDAL-KGDGGS-SW 316 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 317 GNQMRSYVLHPYQMVKDLRTEYEVGNPASVLDGDIDGFLEAGIRWRNRK 365 >gi|87123562|ref|ZP_01079413.1| Peptide chain release factor 2 [Synechococcus sp. RS9917] gi|86169282|gb|EAQ70538.1| Peptide chain release factor 2 [Synechococcus sp. RS9917] Length = 356 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 99/342 (28%), Positives = 165/342 (48%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R ++E S+ D ++ + + +++ +Q + D + Sbjct: 7 DVPALKARQQDLEQLASQPDFWDDQPNAQKQMRRLDEVKAQLQQLEQWRGAIDDAQATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E D E +R + L D + +L I AG GG++A Sbjct: 67 LY--DLEPDDDMLSEAQEGLTTLRHALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHGMKVSVDELSEGEEAGIKSATIEIDGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E+D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKLEDEVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 245 LHIPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G++D I LL Sbjct: 304 IRNYVFHPYQMVKDLRTQEETTDVQGVMDGHLDPFIQALLRQ 345 >gi|172041186|ref|YP_001800900.1| peptide chain release factor 2 [Corynebacterium urealyticum DSM 7109] gi|171852490|emb|CAQ05466.1| peptide chain release factor RF-2 [Corynebacterium urealyticum DSM 7109] Length = 377 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 102/356 (28%), Positives = 172/356 (48%), Gaps = 9/356 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L R E+E + ++ D + + +S + +K+ + +Q +DL + Sbjct: 24 DLDELDWRARELEDQAADPSLWDDPDHAQQVTSELSRVQAKLKKIRELRQRLEDLPVLYN 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIREL----ENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ A + +A+ +E R + + D + ++ IR+G GG Sbjct: 84 MAEEEAAEDPAASEDAVAMAEEERSALRAAIESLEITTMLSGEYDQREALVNIRSGAGGV 143 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A KV++ S ++ G K I G ++ + E G H Sbjct: 144 DAADWAEMLLRMYTRWAEQHGHKVDIYDISYAEEAGIKSATFVIHGDYMYGTLSVEQGAH 203 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP +++P D+R+D R+SG GGQ VNTTDS Sbjct: 204 RLVRISPFDNQGRRQTSFAEVEVLPVVEQTDSIEVPDADVRVDVYRSSGPGGQSVNTTDS 263 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+THIPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ Sbjct: 264 AVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLQAKLLEKKRQEEKAEMDAL--GAGGNAS 321 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ++R+Y + + D R + + VL G +D +I + A+ + Sbjct: 322 WGNQMRSYVLHPYQMVKDLRTEYEVGDPQKVLDGDLDGLIEAGIRWRMAQQQEEGA 377 >gi|118444993|ref|YP_878978.1| peptide chain release factor 2 [Clostridium novyi NT] gi|118135449|gb|ABK62493.1| peptide chain release factor 2 [Clostridium novyi NT] Length = 337 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 117/342 (34%), Positives = 182/342 (53%), Gaps = 10/342 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ R E+E +M ES D K E I +I Y+ K +DL + S Sbjct: 1 MEKRLGELEHKMQESDFWDDINKAQEITQEAKGIKDRIDGYNSTKTRIEDLEVL--IEMS 58 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 E + + E+L +EI + + +L D + I+ + +G GG++A + Sbjct: 59 IEEEDESSIEEILNEVEEIESIIDNFKVEILLSGEYDKNNAIVTLHSGAGGTDAQDWTEM 118 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A R +KV+VL D+ G K I+G + +K E G+HR+ R+ Sbjct: 119 LLRMYTRWAEKRGYKVDVLDILPGDEAGIKSANLKITGEFAYGYLKAEKGIHRLVRISPF 178 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A++ V+PE D++I +D+RIDT RASG+GGQH+N TDSAVRITHIP Sbjct: 179 NANGKRQTSFASLEVIPELKENQDIEIKADDLRIDTYRASGAGGQHINKTDSAVRITHIP 238 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIR 307 TGI+V + SE+SQ QN+ AM +L+++L +++ + + +IG G +IR Sbjct: 239 TGIVVQSQSERSQFQNKDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEIGWG---SQIR 295 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +Y F + DHR N + ++ V+ G ID I L A+ Sbjct: 296 SYVFQPYTMVKDHRTNTEMGNVDAVMDGDIDIFILEYLKANN 337 >gi|30692908|ref|NP_851096.1| HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific [Arabidopsis thaliana] gi|8777302|dbj|BAA96892.1| translation releasing factor RF-2 [Arabidopsis thaliana] gi|15810391|gb|AAL07083.1| putative translation releasing factor RF-2 [Arabidopsis thaliana] gi|21436317|gb|AAM51328.1| putative translation releasing factor RF-2 [Arabidopsis thaliana] gi|21536944|gb|AAM61285.1| translation releasing factor RF-2 [Arabidopsis thaliana] gi|332006668|gb|AED94051.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] Length = 456 Score = 216 bits (549), Expect = 5e-54, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 5/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ +E + +++ D K E ++++ + ++ + + K +D T++ Sbjct: 104 LQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKL 163 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E + I KE+ + ++ L D + ++ I AG GG++A + Sbjct: 164 TEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDW 223 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K +V+ S+ ++ G K I GR + + E G HR+ R Sbjct: 224 ADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQ 283 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + G TS + V V+P + ++IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 284 SPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRI 343 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+ RA+ L+A+L + ++ A E R + + ++ Sbjct: 344 THIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVK-AEWGQQ 402 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IR Y F + + D R + V+ G +D I L + SA Sbjct: 403 IRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMASA 453 >gi|225847994|ref|YP_002728157.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense Az-Fu1] gi|225644274|gb|ACN99324.1| peptide chain release factor 2 [Sulfurihydrogenibium azorense Az-Fu1] Length = 370 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 115/350 (32%), Positives = 183/350 (52%), Gaps = 16/350 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVI 66 L+ ++ +M++ + K E + + + +I D+K ++ QD ++ Sbjct: 27 EKLQEEIKVLDSQMADPNFWNDPKKAQEISSKRNYLGEKLEEILKIDKKVKDLQDYIQLL 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 +S ++ + + + + L D D K+ IL ++AG+GG EA Sbjct: 87 EMEKDESLYTEVEKEINH-----LEKELERLEISSLLSDEMDSKNAILTLQAGSGGVEAC 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + ++VE++ +D G K I G + +K E GVHR+ Sbjct: 142 DWTQMLMRMYLRWAEGKGFQVEIVDYQPDDVAGIKSATIIIKGPFAYGYLKGEQGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ R HTS A V+V+PE E V+I ED+RIDT RASG+GGQHVN TDSAVR Sbjct: 202 RISPFDANKRRHTSFAAVSVIPEIDEEIKVEINEEDLRIDTFRASGAGGQHVNKTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDR 302 ITHIPTGI+V SE+SQ QN+L+A+ +L+A+LY +E ++ ++ K I G+ Sbjct: 262 ITHIPTGIVVACQSERSQLQNKLKALNMLKAKLYQLELQKQKEKQKELEGEKKDITWGN- 320 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + + D R + +E V+ G ID I L + Sbjct: 321 --QIRSYVFQPYQMVKDLRTGYEVGNVEAVMDGDIDGFIESYLKWKAKEK 368 >gi|149914781|ref|ZP_01903311.1| LexA repressor [Roseobacter sp. AzwK-3b] gi|149811574|gb|EDM71409.1| LexA repressor [Roseobacter sp. AzwK-3b] Length = 375 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 113/339 (33%), Positives = 176/339 (51%), Gaps = 9/339 (2%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHN 70 ++R E R+ + D K + ++ I+ +D +QE QD +I + Sbjct: 29 RHRLEEFNARVEDPQLWDDPAKAQKLMRDRQGLVDAITTHDTIQQEMQDNVELIELGEME 88 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D ++ A+ + A+ ++ + E L D LEI AG GG+E+ + Sbjct: 89 GDPDVVAEAEAAIKALARKAAQKEL----EALLNGEADANDAFLEIHAGAGGTESCDWAS 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + VE+ S + ++ G K + ++G + +K ESGVHR+ R+ Sbjct: 145 MLARMYVRWAEQHGYTVELQSETAGEEAGIKSVTYKVTGHNAYGWLKSESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ + HTS ++V V P I++++ DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 205 FDSAAKRHTSFSSVWVYPVVDDNIEIEVNPADIRIDTFRSSGAGGQHVNKTDSAVRITHH 264 Query: 250 PTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 PTGI+VTSSEKSQHQNR AMK L++RLY +E R + + G +IR+Y Sbjct: 265 PTGIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRNEAIAEAHDAK-GDAGWGNQIRSY 323 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R ++ + VL G +D + L Sbjct: 324 VLQPYQMVKDLRTSVETSDTKGVLDGDLDQFMAATLAMD 362 >gi|300857995|ref|YP_003782978.1| peptide chain release factor RF-2 [Corynebacterium pseudotuberculosis FRC41] gi|300685449|gb|ADK28371.1| peptide chain release factor RF-2 [Corynebacterium pseudotuberculosis FRC41] gi|302205723|gb|ADL10065.1| Peptide chain release factor 2 (RF-2) [Corynebacterium pseudotuberculosis C231] gi|302330275|gb|ADL20469.1| Peptide chain release factor 2 (RF-2) [Corynebacterium pseudotuberculosis 1002] gi|308275958|gb|ADO25857.1| Peptide chain release factor 2 (RF-2) [Corynebacterium pseudotuberculosis I19] Length = 366 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 170/345 (49%), Gaps = 9/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L +R E+E + S+ D + +S + +++ +Q D+ + Sbjct: 26 EELASRVRELEQQASDPTLWDNPDHAQKVTTELSSVQAQLKKLTSLRQRIDDMPVMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + +LA E+ + EI LE + D + ++ IR+G GG +AA + Sbjct: 86 EEEGDDTELADEELAELTSEIESLEV----KTMLSGEYDAREAVINIRSGAGGVDAADWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV++ S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 142 EMLMRMYVRWAEKNDRKVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRIS 201 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A + VLP +DIP ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 202 PFDNQGRRQTSFAEIEVLPVVEQTDHIDIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 262 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLEKKRQEERAELDAL--GAGGNASWGNQMR 319 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + + D R N + + VL G +D + + A+ Sbjct: 320 SYVLHPYQMVKDLRTNYEVNDPQKVLDGDLDGFLEAGIRWRMAQQ 364 >gi|224475896|ref|YP_002633502.1| peptide chain release factor RF-2, major part [Staphylococcus carnosus subsp. carnosus TM300] gi|222420503|emb|CAL27317.1| peptide chain release factor RF-2, major part [Staphylococcus carnosus subsp. carnosus TM300] Length = 333 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 168/333 (50%), Gaps = 17/333 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M++ D K E A+ +++ + + ++ H ++ + + DL Sbjct: 1 MMTDPNFWDDQNKAQEIIDKNNALKHVVNGYRDLEAELEDMSATHELLAEEFDEDLKADL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 ++ ++ LL D + ILE+ G GG+E+ + L RMY+R Sbjct: 61 E-----EEANAFKDKLDQFELQLLLNGPYDANNAILELHPGAGGTESQDWASMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 YA + +KVE D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YAEQQGFKVEFADYLPGDEAGVKSVTLVIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEIDVDI--PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS + V+PE + +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFVSCDVIPEFSNNEIEIEVNPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + V+ G I I L Sbjct: 293 YSMVKDHRTNEETGNVNAVMDGEIGPFIEAYLR 325 >gi|319442594|ref|ZP_07991750.1| peptide chain release factor 2 [Corynebacterium variabile DSM 44702] Length = 356 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 164/351 (46%), Gaps = 9/351 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L +R E+E + ++ D + + +S + S++ + DL + Sbjct: 3 DLDELDDRVRELEAQAADPSLWDDPDHAQQVTSQLSHVQSRLKKVRGLRSRLDDLPVMYE 62 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI----RELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + E + R + + DD+ ++ IR+ GG Sbjct: 63 MADEAAVEDAAEGAEAKELADAELADLRADIESLEVTTMLSGEYDDREAVVNIRSAAGGV 122 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A KVEV S ++ G K + G ++ + E G H Sbjct: 123 DAADWAEMLMRMYTRWAEKNGHKVEVYDISYAEEAGIKSATFVVHGDYMYGTLSVEQGTH 182 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP VDI D+R+D R+SG GGQ VNTTDS Sbjct: 183 RLVRISPFDNQGRRQTSFAEVEVLPVVETSDHVDIDENDVRVDVYRSSGPGGQSVNTTDS 242 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+THIPTGI+V +EKSQ QN+ AM+VL A+L + +R+ A E A R GS Sbjct: 243 AVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLAAKLLERKRQEEAAEMDALRGD--GSNS 300 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R N + VL G ID ++ + A+ Sbjct: 301 WGNQMRSYVLHPYQMVKDLRTNYEVNDPSKVLDGGIDGLLEAGIRWRMAQQ 351 >gi|253988706|ref|YP_003040062.1| peptide chain release factor 2 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|211637969|emb|CAR66597.1| peptide chain release factor 2 (rf-2) [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780156|emb|CAQ83317.1| peptide chain release factor 2 (rf-2) [Photorhabdus asymbiotica] Length = 310 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +++ I+ I +Q ++ Q L + + + + + A +++ Sbjct: 1 MGKERSSLEEIVETIDQLEQGLEDVQGLLELAVEADDEETFHEAV-----AELEQLEGKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D +C L+++AG+GG+EA + L RMY R+A + +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLMRMYLRWAESKGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 + G K I G + ++ E+GVHR+ R ++ GR HTS ++ + PE +I Sbjct: 116 GEVAGLKSATIRIMGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY++E ++ R K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYELEMQKKNANRQEMEENKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQS 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|15604144|ref|NP_220659.1| peptide chain release factor 2 [Rickettsia prowazekii str. Madrid E] gi|6225944|sp|Q9ZDQ2|RF2_RICPR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|3860836|emb|CAA14736.1| PEPTIDE CHAIN RELEASE FACTOR 2 (prfB) [Rickettsia prowazekii] Length = 369 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 101/350 (28%), Positives = 172/350 (49%), Gaps = 16/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I L R E+E ++ + L E + ++ + +E +L Sbjct: 24 DIEALTVRLTELEELTADPNLWNNNANAQTLLREKNNLEEKLNVFNKLKSNLKEILELEA 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + N ++ K++ + + L D +C LEI AG GG+E Sbjct: 84 MAEVENDLE-----TLNQIEQDFKKLSIITAKFETECLFSGETDCNNCFLEINAGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + + RMY R+A +K ++++ + ++ G K I G+ + K ESGVHR Sbjct: 139 SHDWASIMMRMYLRFAERLGFKTKIINMINGEEVGIKSCTIRIIGKRAYGWFKTESGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+G+ TS A+ + PE + + I +D+RIDT R+SG+GGQHVNTTDSA Sbjct: 199 LVRISPFNAAGKRMTSFASSWIYPEIDDDIAITIEDKDLRIDTFRSSGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSG 300 VRITHIPT + S++SQH+N+ +AMK+L+A+LY +E ++ ++ K G Sbjct: 259 VRITHIPTNTVTQCQSDRSQHKNKAQAMKMLQAKLYKLEMQKRNENVDKQNANKTDNSWG 318 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y + + D R N + VL G ++D ++ L+ + + Sbjct: 319 ---HQIRSYVLQPYQIVKDLRTNYETSDTKGVLDGNLEDFVSASLSMNNS 365 >gi|307708908|ref|ZP_07645368.1| peptide chain release factor 2 [Streptococcus mitis SK564] gi|307620244|gb|EFN99360.1| peptide chain release factor 2 [Streptococcus mitis SK564] Length = 325 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 182/330 (55%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D +++ + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVQEELVAQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LAELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|58582496|ref|YP_201512.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84624384|ref|YP_451756.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|166711947|ref|ZP_02243154.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzicola BLS256] gi|188575993|ref|YP_001912922.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae PXO99A] gi|58427090|gb|AAW76127.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae KACC10331] gi|84368324|dbj|BAE69482.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188520445|gb|ACD58390.1| peptide chain release factor 2 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 329 Score = 216 bits (549), Expect = 6e-54, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 161/324 (49%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L E + + + I+ + DL + + D + ++ Sbjct: 3 NDAERAQALGRERSMLEKTVIGIADVLSGLVDAGDLLELA-ESEQDEDTALAVIADLDKY 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + +LE + + D + ++I+AG GG+EA + L RMY R+A R WK Sbjct: 62 QTHVEKLE----FERMFSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K I G + +K E GVHR+ R ++ R HTS +V V Sbjct: 118 TELMEVSGGEVAGIKSATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQ Sbjct: 178 SPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+L A+LY++E ++ ER A K IG G +IR Y Q RI D R Sbjct: 238 NRDNAMKMLAAKLYELEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D+ + L A Sbjct: 295 IERSDTQKVLDGDLDEFVEASLKA 318 >gi|300722130|ref|YP_003711413.1| peptide chain release factor RF-2 [Xenorhabdus nematophila ATCC 19061] gi|297628630|emb|CBJ89208.1| peptide chain release factor RF-2 [Xenorhabdus nematophila ATCC 19061] Length = 310 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +++ I+ I DQ ++ L + + + + + A ++ E Sbjct: 1 MGKERSSLESIVETIDQLDQGLEDVNGLLELAVEADDEETFNEAV-----AELDQLEEKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + + D +C L+++AG+GG+EA + L RMY R+A + +K E++ SD Sbjct: 56 GLLEFRRMFSGEYDSANCYLDLQAGSGGTEAQDWASMLMRMYLRWAESKGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K I G + ++ E+GVHR+ R ++ GR HTS ++ + PE +I Sbjct: 116 GDVAGLKSATIKIIGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITH+PTGI+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHMPTGIVTQCQTDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY++E ++ ++ K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYELEMQKKNADKQAMEENKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQS 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|327441322|dbj|BAK17687.1| protein chain release factor B [Solibacillus silvestris StLB046] Length = 328 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 171/328 (52%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + + I + ++ Y + +++L + + + +I Sbjct: 1 MLEPEFWNDQNGAQAIINESNGIKAVVNEYKELVDTQENLEMTLELLREEPDEELQEEIG 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E + + E E+ L + D + ILE+ G GG+E+ + L RMY R+A Sbjct: 61 KELAEFQTKMEEFELQML--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KV + D+ G K + ISG + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVTTIDYLPGDEAGIKSVTLQISGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + ++DI ED+++DT RA+G+GGQH+NTTDSAVRITH+PTG++V SE+ Sbjct: 179 SCDVMPEFNDEIEIDIRTEDLKVDTYRATGAGGQHINTTDSAVRITHLPTGVVVQCQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR AMK+L+++LY +E ++ + R Q IG G +IR+Y F + Sbjct: 239 SQIKNRDAAMKMLKSKLYQLEIEKQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR + + V+ G +D I L Sbjct: 296 DHRTSAETGNVGAVMDGDLDIFITAYLR 323 >gi|289168241|ref|YP_003446510.1| peptide chain release factor 2 [Streptococcus mitis B6] gi|288907808|emb|CBJ22648.1| peptide chain release factor 2 [Streptococcus mitis B6] Length = 325 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + + + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHEELVTQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LSELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|219670742|ref|YP_002461177.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2] gi|219541002|gb|ACL22741.1| hypothetical protein Dhaf_4746 [Desulfitobacterium hafniense DCB-2] Length = 368 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 190/373 (50%), Gaps = 31/373 (8%) Query: 1 MVFLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISP 44 M+F K++ L+ R A++ E+ + D + +S Sbjct: 1 MIFEWKKELESLEVRLADLRVSLDVPQREDKISILEIELQRPDFWDNPEGAQKVMQELSY 60 Query: 45 IISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 K+ Y +Q+ D+ T+ D + + +LA+++ + LE +L Sbjct: 61 QQEKVKTYYTLQQQLDDMLTLYQMAVEEKDESLEPELEEGILALQQRLDGLEL----EIL 116 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D + I+ + AG GG+EA +V L+RMY RY +KVE + D+ G K Sbjct: 117 LSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKVETMDFLPGDEAGIKS 176 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLE 220 + +G F +K E GVHR+ R+ +ASGR HTS A+V V+PE E + + IP E Sbjct: 177 ATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVIPEVMEDNAEIQIPPE 236 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+++DT RASG+GGQHVN T SAVRITH+PTGI+V + SE+SQ QNR +++L+A+L + Sbjct: 237 DLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQNRAYCLRILQAKLLE 296 Query: 280 VERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYI 336 ++RK+ +E S R Q I G +IR+Y F + DHR N V+ G I Sbjct: 297 LKRKQQEDEISEIRGEQQEIAWG---SQIRSYVFHPYNMVKDHRTNEETANTGAVMDGEI 353 Query: 337 DDIINPLLTAHQA 349 D I L +A Sbjct: 354 DQFIAAYLQKTKA 366 >gi|312621634|ref|YP_004023247.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor kronotskyensis 2002] gi|312202101|gb|ADQ45428.1| hypothetical protein Calkro_0529 [Caldicellulosiruptor kronotskyensis 2002] Length = 372 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 179/353 (50%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ +E S+ + I I KI + + + +DL Sbjct: 21 MRVSLDIDGLESELKSLENETSKPEFWQDIENSQKVLQKIKRIKDKIERFQKLYSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + ++E I E + E +I L D + IL I AG GG Sbjct: 81 KVLTELSIEEGNHEMSEELEKELISLERKIDEFKIEIL--LNGPYDKNNAILSIHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+AA + +KVE L ++ G K + I G + +K E GV Sbjct: 139 TEAQDWAEMLLRMYTRWAAKKGYKVETLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT R+SG+GGQHVN T+ Sbjct: 199 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTYRSSGAGGQHVNKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 259 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIG 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 319 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 368 >gi|146319066|ref|YP_001198778.1| peptide chain release factor 2 [Streptococcus suis 05ZYH33] gi|146321272|ref|YP_001200983.1| peptide chain release factor 2 [Streptococcus suis 98HAH33] gi|145689872|gb|ABP90378.1| Protein chain release factor B [Streptococcus suis 05ZYH33] gi|145692078|gb|ABP92583.1| Protein chain release factor B [Streptococcus suis 98HAH33] gi|292558711|gb|ADE31712.1| Peptide chain release factor 2 [Streptococcus suis GZ1] gi|319758505|gb|ADV70447.1| peptide chain release factor 2 [Streptococcus suis JS14] Length = 325 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 98/330 (29%), Positives = 178/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + + + ++ + + + Q + ++ D +RD + Sbjct: 1 MTEPDFWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLDFLAEDESVRDELVEK 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ ++K + E LL + D + ILEI G+GG+EA + L RMY+RY Sbjct: 61 LVELDKTMTAYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + VE L D+ G K + + +G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFIVETLDYQAGDEAGIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+++I +++++DT R+ G+GGQ+VN + VR+THIPTGI+ S+ ++ Sbjct: 177 SVEVMPELDDTIEIEIRDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKLLQAKLYQLEQEKKAAEVDSLKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + +++ V+ G +D I+ L Sbjct: 294 DHRTGYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|322411427|gb|EFY02335.1| peptide chain release factor 2 [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 327 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 106/333 (31%), Positives = 181/333 (54%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ES + I + ++ + S + ++ + + D ++D + Sbjct: 1 MTESDFWNDNIAAQKTSQKLNELKSTYETFHNMQELSDETELYLEMLEEDDSVKDDLEAS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + E LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 61 LETLGQILASYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFV 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAAEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N + +++ V+ G I+ I+ L + Sbjct: 294 DHRTNYEVAQVDKVMDGDIEGFIDAYLKWRMSD 326 >gi|30692913|ref|NP_851097.1| HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific [Arabidopsis thaliana] gi|13568392|emb|CAC36322.1| translation releasing factor2 [Arabidopsis thaliana] gi|332006670|gb|AED94053.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] Length = 455 Score = 215 bits (548), Expect = 6e-54, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 165/351 (47%), Gaps = 5/351 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ +E + +++ D K E ++++ + ++ + + K +D T++ Sbjct: 103 LQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKL 162 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E + I KE+ + ++ L D + ++ I AG GG++A + Sbjct: 163 TEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDW 222 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K +V+ S+ ++ G K I GR + + E G HR+ R Sbjct: 223 ADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQ 282 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + G TS + V V+P + ++IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 283 SPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRI 342 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+ RA+ L+A+L + ++ A E R + + ++ Sbjct: 343 THIPTGVAVRCTEERSQLANKTRALIRLKAKLMVIAEEQRATEIKEIRGDAVK-AEWGQQ 401 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 IR Y F + + D R + V+ G +D I L + SA Sbjct: 402 IRNYVFHPYKLVKDVRTGHETSDITSVMDGDLDPFIKAYLKHKYTLAMASA 452 >gi|257877567|ref|ZP_05657220.1| peptide chain release factor 2 [Enterococcus casseliflavus EC20] gi|257811733|gb|EEV40553.1| peptide chain release factor 2 [Enterococcus casseliflavus EC20] Length = 329 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 175/328 (53%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D K + A + ++Q +E ++L ++ +++ A++E Sbjct: 1 MADPTFWDDSEKAQQVINANNANKETYDQFNQLAEELEELEVMLEMIQEEADPEMEAELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + +L + D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 ARITKLNEKM--ASYELSMLLDEPYDRNNAIIELHPGAGGTESQDWGSMLLRMYTRFCEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGYQVETLDYQAGDEAGIKSVTLLVKGHNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE IDV+I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + +++ Sbjct: 179 SVDVMPELDGAIDVEINSDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G +IR+Y F + Sbjct: 239 SQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQLEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNFETGNVQAVMDGDLDGFIDAYLK 323 >gi|111658353|ref|ZP_01409041.1| hypothetical protein SpneT_02000493 [Streptococcus pneumoniae TIGR4] gi|148997169|ref|ZP_01824823.1| peptide chain release factor 2 [Streptococcus pneumoniae SP11-BS70] gi|149010619|ref|ZP_01831990.1| peptide chain release factor 2 [Streptococcus pneumoniae SP19-BS75] gi|221231551|ref|YP_002510703.1| peptide chain release factor 2 [Streptococcus pneumoniae ATCC 700669] gi|298502540|ref|YP_003724480.1| peptide chain release factor RF2 [Streptococcus pneumoniae TCH8431/19A] gi|147756869|gb|EDK63909.1| peptide chain release factor 2 [Streptococcus pneumoniae SP11-BS70] gi|147765100|gb|EDK72029.1| peptide chain release factor 2 [Streptococcus pneumoniae SP19-BS75] gi|220674011|emb|CAR68524.1| peptide chain release factor 2 [Streptococcus pneumoniae ATCC 700669] gi|298238135|gb|ADI69266.1| peptide chain release factor RF2 [Streptococcus pneumoniae TCH8431/19A] gi|301793914|emb|CBW36310.1| peptide chain release factor 2 [Streptococcus pneumoniae INV104] gi|327390112|gb|EGE88455.1| peptide chain release factor 2 [Streptococcus pneumoniae GA04375] gi|332076034|gb|EGI86500.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41301] gi|332202619|gb|EGJ16688.1| peptide chain release factor 2 [Streptococcus pneumoniae GA41317] gi|332204764|gb|EGJ18829.1| peptide chain release factor 2 [Streptococcus pneumoniae GA47901] Length = 325 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 180/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+ + A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQDKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|119025481|ref|YP_909326.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC 15703] gi|154486912|ref|ZP_02028319.1| hypothetical protein BIFADO_00745 [Bifidobacterium adolescentis L2-32] gi|118765065|dbj|BAF39244.1| peptide chain release factor 2 [Bifidobacterium adolescentis ATCC 15703] gi|154084775|gb|EDN83820.1| hypothetical protein BIFADO_00745 [Bifidobacterium adolescentis L2-32] Length = 376 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 177/355 (49%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L ++E++ +E D + + +S + S++ Q +D+ T+ Sbjct: 25 DVDRLTAEAKDLEVKAAEPGLWDDPENAQKVTSKLSAVQSQLKRLASADQRIEDVETLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D++ A+ EV +I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGQEEEDADTLAEAKAEVESIQKDLDDMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +D+P +IR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDVPDSEIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID+ I + + +A E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDEFIEAGIRWRHEQRRAAAEE 373 >gi|294677084|ref|YP_003577699.1| peptide chain release factor 2 [Rhodobacter capsulatus SB 1003] gi|294475904|gb|ADE85292.1| peptide chain release factor 2 [Rhodobacter capsulatus SB 1003] Length = 375 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 113/346 (32%), Positives = 168/346 (48%), Gaps = 5/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +R E + + + ++ K+ Y + ++ D +I Sbjct: 24 DLETAPHRLEEFNAMIEHGDLWSDPARAQKLMRERQMLMDKLETYRRIDRDLTDNIELIE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + E + ++EL L D LEI AG GG+E+ Sbjct: 84 LGEMEDDPE--IVAEAEKSLRALKELAAAKELEALLDGEADGNDTFLEINAGAGGTESCD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + + VE+ S + D+ G + + ISG+ + +K ESGVHR R Sbjct: 142 WASMLARMYTRWAEKKGYTVELQSETAGDEAGIRSVAYKISGQNAYGWLKSESGVHRQVR 201 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS ++V V P I++DIP DIRIDT R+SG+GGQHVNTTDSAVRI Sbjct: 202 ISPYDSAARRHTSFSSVWVYPVVDDNIEIDIPASDIRIDTYRSSGAGGQHVNTTDSAVRI 261 Query: 247 THIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 TH+PT I+VTSS KSQHQNR AM LRARLY +E + +A + + G +I Sbjct: 262 THLPTNIVVTSSMKSQHQNREAAMNALRARLYQMELDKRNAAINAQHEAK-GEAGWGNQI 320 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+Y + + D R + VL G +D + L A Sbjct: 321 RSYVLQPYQMVKDLRTGHETSDTQGVLDGDLDAFMAATLAMDVAGK 366 >gi|149196339|ref|ZP_01873394.1| peptide chain release factor RF-2 [Lentisphaera araneosa HTCC2155] gi|149140600|gb|EDM28998.1| peptide chain release factor RF-2 [Lentisphaera araneosa HTCC2155] Length = 332 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 119/330 (36%), Positives = 175/330 (53%), Gaps = 14/330 (4%) Query: 23 MSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M S D +A+ ++ + + ++ L +I + + SE+ D A Sbjct: 1 MGSSSFWDDSNAAKSTVDRVSALKSVVVPYKELEARVEDFITLSELIEEEGASSELMDDA 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E +EK + +LE L D SC L I AG GG+E+ + L RMY R+ Sbjct: 61 GEESPELEKALDDLEL----LSFLSGKYDSGSCFLSINAGAGGTESCDWADMLLRMYRRW 116 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KV +S + ++ G K I G F +K E GVHR+ RV +++ R HT Sbjct: 117 AESKGFKVTFVSILEGEEAGIKNCTMFIEGPMAFGYLKAERGVHRLVRVSPFDSNKRRHT 176 Query: 200 SAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S ++ V+P+ E +VDI +D+R+DT RASG+GGQHVNTTDSA+R+TH+PTGI+V Sbjct: 177 SFTSIDVVPDIGDEAEVDIDAKDLRVDTFRASGAGGQHVNTTDSAIRLTHLPTGIVVSCQ 236 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR 315 E+SQH+NR AMK+L A+L ++++ E AN K IG G +IR+Y R Sbjct: 237 MERSQHKNRATAMKMLGAKLEELKQAEREAELDANAGEKNDIGWG---SQIRSYVLDDRR 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N + + VL G ID I L Sbjct: 294 VKDHRTNHSTSNTDKVLDGDIDPFIQSFLR 323 >gi|295109041|emb|CBL22994.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus obeum A2-162] Length = 334 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 101/327 (30%), Positives = 173/327 (52%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D ++ + + + IY + + +D+ T+I +++ E Sbjct: 1 MEAPDFWDDAEVSQKKMKELKSMKDDMEIYHSLESQMEDMETMIEMGYEENDPE--IIPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + E + + I L D ++ I+++ AG GG+EA + G L+RMY R+ Sbjct: 59 IQEMLDEFEKNFDSIRVKTLLSGEYDSENAIIKLNAGAGGTEACDWCGMLYRMYSRWVDR 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL D D+ G K + ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFTMEVLDYLDGDEAGIKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ + DV+I +DIRIDT R+SG+GGQH+N T SA+RITH PTGI+V +E+ Sbjct: 179 SCDVMPDIKKDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+A+L+ ++++ + S R ++ +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKAKLFLLKQQEAEAKLSGIR-GEVTDIGWGNQIRSYVMQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R + ++ VL G ID IN L Sbjct: 298 RTSEETGNVDAVLDGEIDPFINAYLKW 324 >gi|297562654|ref|YP_003681628.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847102|gb|ADH69122.1| peptide chain release factor 2 [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 372 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 170/349 (48%), Gaps = 13/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + + AE+ + ++ D K+T + +++ +++KI+ Q+ + L+ Sbjct: 25 DLEAMHTQIAELREQSADPELWADQDNAQKVTRQLSSLESMVNKINGIGQRLDDLGVLYE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D++ R A E+ + KEI ELE L D++ I+ I + GG + Sbjct: 85 LA-EAEDDADTRVEADRELDQLRKEIGELEV----RTLLNGPHDEREAIVTINSQAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A + +V +S ++ G K + + ++ E G HR Sbjct: 140 AADWAQMLQRMYLRWAERHGYPTDVYETSYAEEAGIKSTSFAVKTPFAYGTLRGEHGTHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R TS A V V+P ++I D+R+D R+SG GGQ VNTTDSA Sbjct: 200 LVRISPFDNQNRRQTSFAGVDVVPVVEQSDHIEIDDGDLRVDVYRSSGPGGQGVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V +E+SQ QN+ AM +L+A+L +R+ R + S Sbjct: 260 VRITHLPTGIVVSCQNERSQLQNKATAMSMLQAKLLARKREEEQAALDEIRGDSVSS--W 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R Y + + D R VL G ID+ I+ + +++ Sbjct: 318 GTQMRNYVLHPYQSVKDVRTGAETGNTSGVLDGDIDEFIDAEIRWMRSR 366 >gi|306833909|ref|ZP_07467033.1| peptide chain release factor RF2 [Streptococcus bovis ATCC 700338] gi|304423910|gb|EFM27052.1| peptide chain release factor RF2 [Streptococcus bovis ATCC 700338] Length = 325 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 179/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + +++ ++ + + + D ++ + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNGLKQTYETFNEMQELSDETELYLEMLDEDDSVQAELEES 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +++ ++ LL + D + ILEI G+GG+EA + LFRMY RY Sbjct: 61 ----LEKLDKIMTSYEMTLLLSEPYDRNNAILEIHPGSGGTEAQDWADMLFRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS + Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFS 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + +++ V+ G ID I+ L Sbjct: 294 DHRTGYEIAQVDKVMDGDIDGFIDAYLKWR 323 >gi|116074014|ref|ZP_01471276.1| peptide chain release factor 2 [Synechococcus sp. RS9916] gi|116069319|gb|EAU75071.1| peptide chain release factor 2 [Synechococcus sp. RS9916] Length = 356 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + LK R ++E ++ D ++ + + +++ +Q K+ D Sbjct: 7 DVPALKARQQDLEQLAAQPDFWDDQQNAQKQMRRLDEVKAQLEQLNQWKRAVDDADATVE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + + + R L D + +L I AG GG++ Sbjct: 67 LYALEPDDDMLGEAQTGLTQLRTELDRW-----ELERLLSGEYDKEGAVLSINAGAGGTD 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR Sbjct: 122 AQDWALMLMRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+ + TS A V V+P+ E +DIP +D+ I T R+ G+GGQ+VN ++A Sbjct: 182 LVRISPFNANDKRQTSFAGVEVMPKIEEDVQLDIPEKDLEITTSRSGGAGGQNVNKVETA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I Sbjct: 242 VRILHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAW 300 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R ++ V+ G +D I LL Sbjct: 301 GNQIRNYVFHPYQMVKDLRTQHETNDVQGVMDGDLDPFIQSLLHQ 345 >gi|15888668|ref|NP_354349.1| peptide chain release factor 2 [Agrobacterium tumefaciens str. C58] gi|15156400|gb|AAK87134.1| peptide chain release factor 2 [Agrobacterium tumefaciens str. C58] Length = 342 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 108/336 (32%), Positives = 163/336 (48%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + I+ + +Q+ ++ +L + D ++ Sbjct: 2 NNKAEDPTLWNDASEAQKLMRERQQLDDSINGVKALEQQLKDNIELIELGEMEGDDEIVK 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D + N + D +E+ +G GG+E+ + L RMY Sbjct: 62 DAEDALKALRSEA-----NRRQVEAMLSGEADSNDTYVEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + +KVEVL D D+ G K + G F MK ESGVHR+ R+ +++ R Sbjct: 117 TRWAERQGFKVEVLEIHDGDEAGIKSATILVKGHNAFGWMKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-M 254 HTS +++ V P I +DI D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI + Sbjct: 177 RHTSFSSIWVYPVVDDSIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIAV 236 Query: 255 VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRARLY+VE ++ A K IG G +IR+Y Sbjct: 237 ACQQERSQHKNRAKAWDMLRARLYEVELQKREEAANAQAASKTDIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +++ + L Sbjct: 294 PYQLVKDLRTGVESTAPGNVLDGDLNEFMEAALAHR 329 >gi|307705242|ref|ZP_07642109.1| peptide chain release factor 2 [Streptococcus mitis SK597] gi|307621191|gb|EFO00261.1| peptide chain release factor 2 [Streptococcus mitis SK597] Length = 325 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + + + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFQKMEELQDEVEILLDFLAEDESVHEELVEQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LSELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|319957316|ref|YP_004168579.1| bacterial peptide chain release factor 2 (brf-2) [Nitratifractor salsuginis DSM 16511] gi|319419720|gb|ADV46830.1| bacterial peptide chain release factor 2 (bRF-2) [Nitratifractor salsuginis DSM 16511] Length = 372 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 181/344 (52%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +++ R EIE D K+++E + ++K ++ Q+ + Sbjct: 27 EEIRKRLDEIEEMQQNPEFWTDSDRAAKISQEKTRLERTLAKYDEAKAALEDAQEYFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E ++ E +++ I++LE I D + I+ I G GG+E+ Sbjct: 87 K-SEGDEETLEMLYDEAENLKEHIQQLEVAIM----LSGEHDSANAIVTIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A +KVEVL ++ G K++ I G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRWAERHGFKVEVLDYQPGEEAGIKDVSFIIKGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS +V V PE + D++I +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDANAKRHTSFTSVMVSPEINDDIDIEIEDKDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+N+ AMK+L++RLY+ E + E K IG G Sbjct: 262 ITHIPTGIVVQCQNDRSQHKNKAAAMKMLKSRLYEYEMAKKQAEIDGIEKSDIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y ++ D R +E +L G ID ++ +L A Sbjct: 319 QIRSYVLQPYQQVKDTRSGQAFTNVEAILDGDIDKLLEGVLIAQ 362 >gi|332662344|ref|YP_004445132.1| hypothetical protein Halhy_0347 [Haliscomenobacter hydrossis DSM 1100] gi|332331158|gb|AEE48259.1| hypothetical protein Halhy_0347 [Haliscomenobacter hydrossis DSM 1100] Length = 358 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 103/362 (28%), Positives = 169/362 (46%), Gaps = 23/362 (6%) Query: 4 LSHKQICDLKNRF----------------AEIELRMSESPSVDAYIKLTEEYAAISPIIS 47 ++ +Q+ DL+ R E E + + + + + Sbjct: 1 MTIEQLRDLRERLVSLGRYLDVENRLIQIEEQEQLSLDPTFWNDPKRAETILKELKSHKN 60 Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 ++ Y + E D ++ + + + I LE + Sbjct: 61 WVAQYKAAEAEVDDAEVLLEFNKEGEATEEEVDQKYAEALAVIEGLEFH----TTLNQPE 116 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D+ + +LEI AG GG+EA + L+RMY +A R +K L+ D D G K I Sbjct: 117 DELNVVLEINAGAGGTEACDWAEMLYRMYMMWAQRRGFKFTELNRQDGDVAGLKSASIEI 176 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDT 226 G VF +K E+GVHR+ RV + G+ TS ++V V I+++I D+ DT Sbjct: 177 EGEYVFGLLKGENGVHRLVRVSPYNSQGKRMTSFSSVFVHPMVDDSIEIEINPADLEWDT 236 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 RASG+GGQHVN T+SAVR+ H+P+GI+ E+SQH NR +AM++L++RLY+ E ++ Sbjct: 237 FRASGAGGQHVNKTESAVRVRHLPSGIVAECQQERSQHMNRDKAMQMLKSRLYERELEKQ 296 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 E+ ++ + + +IR+Y R+ DHR + + VL G ID+ + L Sbjct: 297 KAEKETIESGKMKN-EWGSQIRSYVLDDRRVKDHRTGYQTSQTDAVLNGDIDEFLKAFLM 355 Query: 346 AH 347 H Sbjct: 356 HH 357 >gi|282905164|ref|ZP_06313021.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Btn1260] gi|282331571|gb|EFB61083.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus Btn1260] Length = 331 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 167/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFEGEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 326 >gi|260427583|ref|ZP_05781562.1| peptide chain release factor 2 [Citreicella sp. SE45] gi|260422075|gb|EEX15326.1| peptide chain release factor 2 [Citreicella sp. SE45] Length = 397 Score = 215 bits (548), Expect = 7e-54, Method: Composition-based stats. Identities = 115/339 (33%), Positives = 162/339 (47%), Gaps = 6/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ + Y KQE D +I + + Sbjct: 55 RLEEFNARVEDPNLWDDPQAAQKLMRDRQMLVDAMETYSSIKQELSDNVELIEMGEMEED 114 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +++ E + + L D LEI AG GG+EA + L R Sbjct: 115 DEVVSEAEAALRALAEKA--GQKELEALLDGEADGNDTFLEINAGAGGTEACDWAAMLQR 172 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A R + VE+ + G K ISG + +K ESGVHR+ R+ Sbjct: 173 MYVRWAEKRGYDVELQFEEAGAEAGTKSCGYKISGTNAYGWLKSESGVHRLVRISPFGK- 231 Query: 195 GRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G TS A+V V P I++D+ DIRIDT R+SG+GGQHVNTTDSAVRITHIPT I Sbjct: 232 GTRETSFASVWVYPVVDDNIEIDVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHIPTNI 291 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + E +A + + G +IR+Y Sbjct: 292 VVTSSEKSQHQNRDIAMKALKSRLYQMELDKRNAEINAQHEAK-GDAGWGNQIRSYVLQP 350 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + + VL G +D + L + Sbjct: 351 YQMVKDLRTSHETSDTQGVLDGDLDPFMAATLAQQASGK 389 >gi|302544934|ref|ZP_07297276.1| peptide chain release factor 2 [Streptomyces hygroscopicus ATCC 53653] gi|302462552|gb|EFL25645.1| peptide chain release factor 2 [Streptomyces himastatinicus ATCC 53653] Length = 370 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ A +E + + D + + +S + + ++ + DL + Sbjct: 25 DLDKMRADIAVLEEQAAAPSLWDDPENAQKVTSKLSYLQGHLRRAEELRGRIDDLEVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A+ E E + L D + ++ IRA GG +AA Sbjct: 85 LAADEGDEDARAEAEAELNAVRKAVDE--MEVRTLLSGEYDAREAVVNIRAEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K E+ +S ++ G K + + + E G HR+ R Sbjct: 143 FAEQLQRMYLRWAERHGYKTEIYETSYAEEAGIKSTTFAVQIPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++RID R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRIDVYRSSGPGGQGVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QNR AM VL+A+L D R+ + A + G + Sbjct: 263 THIPTGIVVSCQNERSQIQNRATAMNVLQAKLLDRRRQEEQAKMDALKGD--GGNSWGNQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G +D + + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEFEVGNPQAVLDGELDGFLEAGIRWRKQR 366 >gi|260584689|ref|ZP_05852435.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633] gi|260157712|gb|EEW92782.1| peptide chain release factor 2 [Granulicatella elegans ATCC 700633] Length = 331 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 168/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MSE D K + + + + Q + + +++ + + D E + E Sbjct: 1 MSEPGFWDDNEKAQMVIQKSNELKAVYDTFHQLELQVEEVELLFEMYKEDPE--EEIHDE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ + + + +L D S ILEI G GG+E+ + L RMY R+A Sbjct: 59 LVERVHSVEKELEKYELSMLLSGPHDKCSAILEIHPGAGGTESQDWGSMLLRMYTRWAEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +++E + D ++ G K + +I G + +K E GVHR+ R+ +A+G+ HTS Sbjct: 119 HGYRIETVDYQDGEEAGIKSVTLSIEGLNAYGYLKSEKGVHRLVRISPFDAAGKRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ ++P+ +ID++I +D++ID RASG+GGQH+N T SAVRITHIPTGI+ + +++ Sbjct: 179 SIDIMPQLEGDIDIEINPDDLKIDVYRASGAGGQHINKTSSAVRITHIPTGIVTQSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +N+ +AM +L+ +LY +E ++ A E + R Q +IR Y F + D Sbjct: 239 SQFKNKDQAMAMLKTKLYQLEEEKKAAELAEIRGEQ-KDIAWGSQIRNYVFHPYSLVKDL 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R + V+ G +D ++ L Sbjct: 298 RSGHETGNIGAVMDGDLDPFMDAYLKW 324 >gi|229823414|ref|ZP_04449483.1| hypothetical protein GCWU000282_00712 [Catonella morbi ATCC 51271] gi|229787189|gb|EEP23303.1| hypothetical protein GCWU000282_00712 [Catonella morbi ATCC 51271] Length = 331 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 173/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSDSEIRDLAQ 80 MS D K + + ++ S ++ D+ + D + D++I A+ Sbjct: 1 MSAPDFWDDNEKAQKIISQLNLAKETYSTIHALEEGVADIEVALELYDESEDADILAEAE 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 +V ++ ++ E LL D + ILEI G GG+E+ + L RMY+R+A Sbjct: 61 GQVAQVQADLDAYE----MKLLLSGPHDANNAILEIHPGAGGTESQDWGSMLLRMYQRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + +KV VL D ++ G K + I G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 DKQGFKVTVLDYQDGEEAGIKSVTLEIEGHNAYGYLKSEKGVHRLVRISPFDSNSRRHTS 176 Query: 201 AATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A+V V P I++DI +D+RIDT RASG+GGQH+N T SA+RITHIPTGI+ + S Sbjct: 177 FASVEVTPMLDDTIEIDINPDDLRIDTYRASGAGGQHINKTSSAIRITHIPTGIVTQSQS 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 ++SQ QNR AM +L+A+LY +E + A E +A + Q +IR+Y F + Sbjct: 237 QRSQFQNRDLAMAMLKAKLYQLEEENKAKELAALKGEQ-KDIAWGSQIRSYVFHPYAMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + V+ G ++ I+ L Sbjct: 296 DHRTSYEVGNTGAVMDGDLNGFIDAYLKWQ 325 >gi|159036572|ref|YP_001535825.1| peptide chain release factor 2 [Salinispora arenicola CNS-205] gi|189040003|sp|A8M3R1|RF2_SALAI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157915407|gb|ABV96834.1| peptide chain release factor 2 [Salinispora arenicola CNS-205] Length = 373 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 102/353 (28%), Positives = 161/353 (45%), Gaps = 10/353 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ K R E S D + + + +S + +I+ + D Sbjct: 24 LDIDRLRADKARLEE---AASAPDLWDDQARAQQVTSQLSYVNGEITKLTDLRSRLDDTQ 80 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++S+ L ++ E + L D + ++ IRAG GG Sbjct: 81 VLLELAEAESDPGVLTEVAAEITGLAKSIDE--MEVRTLLSGEYDSREALVAIRAGAGGV 138 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA F L RMY R+A + EV +S ++ G K T+ + + ESG H Sbjct: 139 DAADFAEMLLRMYLRWAERHGYPTEVYETSYAEEAGLKSATFTVKVPYAYGTLSVESGTH 198 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V VLP +DIP ++R D R+SG GGQ VNTTDS Sbjct: 199 RLVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIDIPENEMRTDVYRSSGPGGQSVNTTDS 258 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITHIPTGI+V +EKSQ QN+ A++VL+ARL + +R+ + + GS Sbjct: 259 AVRITHIPTGIVVTCQNEKSQLQNKASALRVLQARLLERKRQEEQAKLQGLKTDAAGS-- 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +++R+Y + + D R V G +D I + + + + Sbjct: 317 WGDQMRSYVLHPYQMVKDLRTEQETGSPSSVFDGELDAFIEAGIRWRKQQQLS 369 >gi|306829186|ref|ZP_07462376.1| peptide chain release factor RF2 [Streptococcus mitis ATCC 6249] gi|304428272|gb|EFM31362.1| peptide chain release factor RF2 [Streptococcus mitis ATCC 6249] Length = 325 Score = 215 bits (547), Expect = 8e-54, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 182/330 (55%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFCKMEELQDEVEILLDFLAEDESVHDELVEQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++K + E LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 LTELDKMMTSYE----MTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTG +V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGTVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|325916711|ref|ZP_08178968.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas vesicatoria ATCC 35937] gi|325537060|gb|EGD08799.1| bacterial peptide chain release factor 2 (bRF-2) [Xanthomonas vesicatoria ATCC 35937] Length = 329 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 108/324 (33%), Positives = 160/324 (49%), Gaps = 12/324 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L E + + + I+ + +L + D D + ++ Sbjct: 3 NDAERAQALGRERSMLEKTVIGIADVLAGLTDAGELLDLA-DSEQDEDTAVAVIADLDKY 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + +LE + D + ++I+AG GG+EA + L RMY R+A R WK Sbjct: 62 QAHVEKLEFQRM----FSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K I G + +K E GVHR+ R ++ R HTS +V V Sbjct: 118 TELMEVSGGEVAGIKSATIRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFV 177 Query: 207 LPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQ Sbjct: 178 SPEVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+L A+LY++E ++ ER A K IG G +IR Y Q RI D R Sbjct: 238 NRDNAMKMLAAKLYELEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 + + VL G +D+ + L A Sbjct: 295 IERSDTQKVLDGDLDEFVEASLKA 318 >gi|156389000|ref|XP_001634780.1| predicted protein [Nematostella vectensis] gi|156221867|gb|EDO42717.1| predicted protein [Nematostella vectensis] Length = 273 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 144/261 (55%), Positives = 193/261 (73%), Gaps = 3/261 (1%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 L+PKD D+ ILE+RAGTGG EA+LF ++F MY+R+AA +KWK ++L + +D Sbjct: 2 MKALIPKDEADENDAILEVRAGTGGQEASLFASEMFIMYQRFAAFKKWKFDILDIARSDT 61 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GGYKE A+ISG GVF +MKFE GVHRVQRVP TEA GRVHTS TVAVLP+ E+DV I Sbjct: 62 GGYKEASASISGYGVFGKMKFEVGVHRVQRVPVTEAQGRVHTSTMTVAVLPQPQEVDVII 121 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 D++IDT RASG+GGQHVNTTDSAVRITHIP+G++V + E+SQ +N+ +AM+VLRAR Sbjct: 122 SPNDLKIDTFRASGAGGQHVNTTDSAVRITHIPSGMVVSSQEERSQFKNKAKAMQVLRAR 181 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY- 335 LYD++R+ + R R+ QIG+ +RSE+IRTYNF QGR+TDHRI +T + ++ L+G Sbjct: 182 LYDLQRQEADSARVHARRTQIGTAERSEKIRTYNFPQGRVTDHRIGMTSHTVDKFLEGGV 241 Query: 336 -IDDIINPLLTAHQAKMIGSA 355 ++D+I+ L + + Sbjct: 242 LLEDMIDALRVQDERDALKEL 262 >gi|242279065|ref|YP_002991194.1| hypothetical protein Desal_1593 [Desulfovibrio salexigens DSM 2638] gi|242121959|gb|ACS79655.1| hypothetical protein Desal_1593 [Desulfovibrio salexigens DSM 2638] Length = 372 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 119/336 (35%), Positives = 177/336 (52%), Gaps = 16/336 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R EIE +S+ + D LT E + + ++ K + ++ + + Sbjct: 31 KERLEEIEHDLSKPGAWDKPDALTPVLREKSMLEEKVTSYDNLTSSKDDVEEWLMMASED 90 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + L+ +++ +L + L +D + ILEI G GG E+ + Sbjct: 91 QDQEILEALS-----ENVEKLAKLVEQTELAALLSGPEDKSTAILEIHPGAGGIESQDWA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A R WK L +D+ G K + I G + +K E+G+HR+ R+ Sbjct: 146 EMLLRMYLRWADKRNWKTSYLDYQPDDEAGIKSVTLRIEGLYAYGFLKGEAGIHRLIRIS 205 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V V PE + +I++++ EDIR+D RASG GGQHVN T+SAVRITH Sbjct: 206 PFDASGRRHTSFASVDVYPEISQDIEIEVKDEDIRLDVFRASGPGGQHVNKTNSAVRITH 265 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSER 305 +PT I+V +EKSQ +N+ AMKVL++RLY+ E KR + A+ K IG G + Sbjct: 266 LPTNIVVQCQNEKSQLKNKETAMKVLKSRLYEQELKRQEESKRADYATKDSIGFG---SQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDII 340 IRTY R + DHR +E VL G +D +I Sbjct: 323 IRTYTLQPYRLVKDHRCGAEDGNVEAVLDGELDGLI 358 >gi|313679114|ref|YP_004056853.1| bacterial peptide chain release factor 2 (brf-2) [Oceanithermus profundus DSM 14977] gi|313151829|gb|ADR35680.1| bacterial peptide chain release factor 2 (bRF-2) [Oceanithermus profundus DSM 14977] Length = 370 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 114/355 (32%), Positives = 181/355 (50%), Gaps = 15/355 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I K R E+E + + D KLT+E A + ++ Y+Q + + L Sbjct: 18 DIAGKKARLEELEKELGQEGLWDDPAAAQKLTQEAARLKKVVE---EYEQLSGDLESLIE 74 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + E R+ + E+ K++ +L + L +K+ IL I+ G GG+E Sbjct: 75 LWDEAS--PEERESLEPELEEAAKKLEDL----YHQTLLGFEHAEKNAILTIKPGAGGTE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A +KVE++ + + G + G + + E GVHR Sbjct: 129 AMDWAEMLLRMYTRWAERHGFKVELVDVTPGPEAGIDSAELIVRGENAYGLLSAERGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +++GR HTS A+V V PE + +++I ED+RID RA G GGQ VNTTDSA Sbjct: 189 LVRPSPFDSTGRRHTSFASVEVSPEVDDTVEIEIKPEDLRIDVFRAQGHGGQGVNTTDSA 248 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI H+PTGI+V + + +SQH+N+ AMKVL++RL++ E ++ E + R Q + Sbjct: 249 VRIVHLPTGIIVTSQATRSQHKNKELAMKVLKSRLFEREWQKRQEEMAKLRGEQKA-IEW 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +IR+Y + + DHR L + + VL G +DD+I L E Sbjct: 308 GSQIRSYVLDKQYVKDHRTGLMRHDPDKVLDGDLDDLIWAGLEWRAGLRQAEPHE 362 >gi|183603122|ref|ZP_02712622.2| peptide chain release factor 2 [Streptococcus pneumoniae SP195] gi|183573173|gb|EDT93701.1| peptide chain release factor 2 [Streptococcus pneumoniae SP195] Length = 329 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+T+IPTGI+V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|116492233|ref|YP_803968.1| peptide chain release factor 2 [Pediococcus pentosaceus ATCC 25745] gi|116102383|gb|ABJ67526.1| bacterial peptide chain release factor 2 (bRF-2) [Pediococcus pentosaceus ATCC 25745] Length = 343 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 105/336 (31%), Positives = 172/336 (51%), Gaps = 10/336 (2%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E D + + + K + ++L + + Sbjct: 9 EAKMAEPNFWDNQEQAQIVINENNELKQKYDNFKNLTDHVENLEVTAELLEMEDDP--DV 66 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q E + +L + LL D + I+EI G GG+E+ + L RMY R+ Sbjct: 67 QSEFESELAATAKLLQDYRLGLLLNGKYDANNAIIEIHPGAGGTESQDWGSMLLRMYTRW 126 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A ++KV++ + G + I G + ++ E GVHR+ R+ +++GR HT Sbjct: 127 AEQHQFKVQIEDYQAGEVAGISSVTMRIVGHNAYGYLRSEKGVHRLVRLSPFDSAGRRHT 186 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE ++V+I +D+R+D R+SG+GGQH+N T SAVRITH+PTGI+V + Sbjct: 187 SFASVDVMPELDDSVEVNINQDDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVVASQ 246 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ QNR AM +L+A+L+++E ++ A E++ +Q IG G +IR+Y F Sbjct: 247 AERSQLQNRATAMSMLKAKLFELEEQKKAEEKAKIEGIQLEIGWG---SQIRSYVFHPYS 303 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N ++ V+ G DD IN L + Sbjct: 304 MVKDHRSNFETANVQGVMDGDFDDFINAYLQWKLKE 339 >gi|89055024|ref|YP_510475.1| peptide chain release factor 2 [Jannaschia sp. CCS1] gi|88864573|gb|ABD55450.1| bacterial peptide chain release factor 2 (bRF-2) [Jannaschia sp. CCS1] Length = 375 Score = 215 bits (547), Expect = 9e-54, Method: Composition-based stats. Identities = 111/335 (33%), Positives = 168/335 (50%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + + K + ++ K+ Y+ +Q D +I + + Sbjct: 31 RLEEFNARVEDPNLWNDPEKAQKLMRDRQVLVDKMKQYETIRQGVDDNAELIELGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +A+ E L D LEI +G GG+E+ + L R Sbjct: 91 AEVVAEAEAALTALVDEA--AAKELEALLDGEADSNDTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + + V++ S S ++ G K V ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYTRWAEKQGYDVDLQSFSAGEEAGIKSAVYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDKRSAKVNEVHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G ID ++ +L Sbjct: 328 YQMVKDLRTAFETSDTQGVLDGNIDGLMASVLAMD 362 >gi|126311212|ref|XP_001381267.1| PREDICTED: similar to Mitochondrial translational release factor 1-like [Monodelphis domestica] Length = 567 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 138/303 (45%), Positives = 202/303 (66%), Gaps = 5/303 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + +K+QE Q++ ++ D N D +R LA+ E+++ +KE+ +L+ +I LL+P Sbjct: 66 ELAMAARKLREKEQELQEIERLLEDENED--LRKLAENEIISCQKELTKLKQKIILLLIP 123 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY+RYA +KW E+L ++ GG + Sbjct: 124 SEETDENDLILELTAGVGGQEAMLFTAEMFDMYQRYATYKKWHFEILEYFPSEIGGLRHA 183 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +++R Sbjct: 184 SASIGGPEAYRHMKFEGGVHRVQRVPKTEKQGRMHTSTMTVAILPQPTEINLVINPKELR 243 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 I+T RASG+GGQHVNTTDSAVRI H+PTG+ E+SQ +N+ AMK LRA+LY + Sbjct: 244 IETKRASGAGGQHVNTTDSAVRIVHLPTGVATECQQERSQIKNKEMAMKKLRAKLYSMLL 303 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R + RK+QIG+ RSE+IRTY+F Q R+TDHRI+ +LY ++ + G +D++I Sbjct: 304 EEETNKRYSARKIQIGTKGRSEKIRTYHFPQNRVTDHRISKSLYDIQSFMLGEYLLDELI 363 Query: 341 NPL 343 L Sbjct: 364 QSL 366 >gi|167646537|ref|YP_001684200.1| peptide chain release factor 2 [Caulobacter sp. K31] gi|189039999|sp|B0SXB7|RF2_CAUSK RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|167348967|gb|ABZ71702.1| peptide chain release factor 2 [Caulobacter sp. K31] Length = 367 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + E+ R+ + D ++ + A+++ + + + ++ + + Sbjct: 23 DAALRKLDELNARVEDPTLWDRPSEAQAVSRDRASLAARVGAVQELEGGLKDALEYAELA 82 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + D A K++++ L D C +EI +G GG+E+ Sbjct: 83 DMEGDEALLEDAR-----AQLKDLKDRAGRAELEALLSGEADGNDCYVEINSGAGGTESC 137 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L RMY R+A K VE++ + D G K + G + +K E+GVHR+ Sbjct: 138 DWAGMLLRMYSRWANAHKMSVELVEETAGDQVGIKSATLLVKGANAYGWLKTEAGVHRLV 197 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+ V P I++DI D+R DT RASG+GGQH+N TDSAVR Sbjct: 198 RISPYDAAAKRHTSFASAWVYPVVDDTIEIDINPSDVRTDTYRASGAGGQHINKTDSAVR 257 Query: 246 ITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +THIPTGI + + +SQHQNR A K+LRARLY+ E +R + ++K IG G Sbjct: 258 LTHIPTGIAVACQAGRSQHQNREEAWKMLRARLYEAELQRREAAQQALEDQKTDIGWG-- 315 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R N+ + VL G +D + L Sbjct: 316 -HQIRSYVLQPYQMVKDLRTNVETSDTQGVLDGDLDAFMGASLAQR 360 >gi|254386617|ref|ZP_05001914.1| peptide chain release factor 2 [Streptomyces sp. Mg1] gi|194345459|gb|EDX26425.1| peptide chain release factor 2 [Streptomyces sp. Mg1] Length = 369 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 157/346 (45%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDKLRAEIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + LA+ E E + L ++ ++ IRA GG +A+ Sbjct: 85 LAQEMDDADTLAEAENELTSVRKALDE--MEVRTLLSGEYAEREALVNIRAEAGGVDASD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + EV +S ++ G K + + + E G HR+ R Sbjct: 143 FAERLQRMYLRWAERHGYPTEVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP + V+I ++RID RASG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVESSDHVEIDEGELRIDVYRASGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMDALKD---GGSSWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G ID + + + + Sbjct: 320 MRSYVLHPYQMVKDLRTEFEVGNPQAVLDGEIDGFLEAGIRWRKQQ 365 >gi|212702489|ref|ZP_03310617.1| hypothetical protein DESPIG_00506 [Desulfovibrio piger ATCC 29098] gi|212674150|gb|EEB34633.1| hypothetical protein DESPIG_00506 [Desulfovibrio piger ATCC 29098] Length = 366 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 122/347 (35%), Positives = 179/347 (51%), Gaps = 16/347 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + R A IE +S + D LT E + +++++ + + + + Sbjct: 27 EQRLAAIETELSRPNAWDNPEALTPLLREKRQLEDEVARLNALKTCHDDMHEWLELAVES 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + LA + + L +E ++L +D++ ILEI G GG+E+ + Sbjct: 87 GEDEALESLA-----KQQDSLDALLDETELVMLLSGEEDNQDAILEIHPGAGGTESQDWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+AA R + VE L D+ G K + ISG F +K E G+HR+ R+ Sbjct: 142 EMLLRMYTRWAARRHFTVEELDYLPGDEAGIKSVTLRISGPHAFGFLKSERGIHRLIRIS 201 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V V+P+ +I +DI D+R DT R+SG GGQ VNTT SAVR+TH Sbjct: 202 PFDASGRRHTSFASVDVMPDVGDDIQLDIKETDLRFDTFRSSGPGGQSVNTTSSAVRVTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 IPTGI +EKSQH N+ A+ +L+ARLY++E ++ ER+A K I G + Sbjct: 262 IPTGISAQCQNEKSQHHNKEAALCILKARLYNLELQKREAERAAQYAGKDAIAFG---SQ 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IRTY R + DHR N +E VL G ID + L + Sbjct: 319 IRTYTLQPYRLVKDHRTNSECGDVEAVLDGQIDQFQHDYLLYRHEQQ 365 >gi|168215798|ref|ZP_02641423.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239] gi|182382266|gb|EDT79745.1| peptide chain release factor 2 [Clostridium perfringens NCTC 8239] Length = 323 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 162/326 (49%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETAQEIIS 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + + +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N + V+ G ID+ I L Sbjct: 296 HRTNFETSNVNGVMDGDIDNFIIAYL 321 >gi|15902709|ref|NP_358259.1| peptide chain release factor 2 [Streptococcus pneumoniae R6] gi|116516272|ref|YP_816152.1| peptide chain release factor 2 [Streptococcus pneumoniae D39] gi|182683675|ref|YP_001835422.1| peptide chain release factor 2 [Streptococcus pneumoniae CGSP14] gi|303255830|ref|ZP_07341871.1| peptide chain release factor 2 [Streptococcus pneumoniae BS455] gi|15458252|gb|AAK99469.1| Peptide chain release factor 2 [Streptococcus pneumoniae R6] gi|116076848|gb|ABJ54568.1| peptide chain release factor 2 [Streptococcus pneumoniae D39] gi|182629009|gb|ACB89957.1| peptide chain release factor 2 [Streptococcus pneumoniae CGSP14] gi|302597214|gb|EFL64319.1| peptide chain release factor 2 [Streptococcus pneumoniae BS455] Length = 329 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 102/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HT Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHT 177 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS 258 S +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+T+IPTGI+V S+ Sbjct: 178 SFTSVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQST 237 Query: 259 -EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG- 314 +++Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ Sbjct: 238 VDRTQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYT 294 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + + +++ V+ G +D I+ L Sbjct: 295 MVKDHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 327 >gi|153810056|ref|ZP_01962724.1| hypothetical protein RUMOBE_00437 [Ruminococcus obeum ATCC 29174] gi|149834234|gb|EDM89314.1| hypothetical protein RUMOBE_00437 [Ruminococcus obeum ATCC 29174] Length = 335 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 101/327 (30%), Positives = 175/327 (53%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D ++ + + + IY + + +D+ T+I +++ + +I+ Sbjct: 1 MEAPDFWDNAEVSQQKMKELKSMKDDMEIYHSLETQMEDMETMIEMGYEENDPEIIPEIQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E + + LL + + + I+++ AG GG+EA + G L+RMY R+ Sbjct: 61 EMLDEFQKNFDSIRVKTLLSGEYDSE--NAIIKLNAGAGGTEACDWCGMLYRMYSRWVDR 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +EVL D D+ G K + ++G + +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGFTMEVLDYLDGDEAGVKSVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ + DV+I +DIRIDT R+SG+GGQH+N T SA+RITH PTGI+V +E+ Sbjct: 179 SCDVMPDIKKDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+A+LY ++++ + S R ++ +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKAKLYLLKQQEAEAKLSGIR-GEVTDIGWGNQIRSYVMQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R + ++ VL G ID IN L Sbjct: 298 RTSEETGNVDAVLDGDIDPFINAYLKW 324 >gi|291542843|emb|CBL15953.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus bromii L2-63] Length = 372 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 110/340 (32%), Positives = 177/340 (52%), Gaps = 6/340 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + ++EL+ +E D K + + K+ Y+ + +D H +I Sbjct: 27 MKGMLSEIQQLELKATEPGFWDDVEKSQKVLQRTGSLKGKVEAYEGLVAKYEDTHALIEL 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N E L + +E LE + LL + D + IL AG+GG+EA + Sbjct: 87 ANE-EEDESLLEEAESEVEAVKENLEKQRLQTLLTGEYDK-NNAILTFHAGSGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+A +KV+ + D D+ G K V + G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYTRWAEAHGFKVKEVDYLDGDEAGLKSAVLLVEGENAYGYLKSEAGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++GR HTS +++ V+PE + +V IP EDI++D RASG+GGQ VN T SAVR+T Sbjct: 205 SPFDSAGRRHTSFSSLEVMPEIAKDTEVHIPPEDIKMDVYRASGAGGQKVNKTSSAVRLT 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGI+V + E+SQ+QNR AM +L ++L +++ + + + +Q +I Sbjct: 265 HIPTGIVVASQVERSQYQNRDVAMNMLISKLVEIKEREHLEKIEDIKGVQ-KEITWGSQI 323 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + DHR ++ V+ G +D IN L Sbjct: 324 RSYVFMPYTMVKDHRTGFETGNIQAVMDGDLDGFINAYLK 363 >gi|224373403|ref|YP_002607775.1| peptide chain release factor 2 [Nautilia profundicola AmH] gi|254790918|sp|B9L5Y7|RF2_NAUPA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|223589806|gb|ACM93542.1| peptide chain release factor 2 [Nautilia profundicola AmH] Length = 367 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 114/343 (33%), Positives = 189/343 (55%), Gaps = 8/343 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R EIE + + + + I+ K+ Y + K QD + Sbjct: 27 EKLEARLKEIEELENSPDFWNDPKTSAKVQKEKNAILRKLEKYKKAKTALQDNKDMFELA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + + EV ++++++ ++ ++ D +D K+ I+ I G GG+E+ + Sbjct: 87 SMEED--EETLNEVFNDVQDLKKIIRDLEIEVMLSDENDAKNAIISIHPGAGGTESHDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA R WKVEVL D+ G K++ + G + +K E+G+HR+ RV Sbjct: 145 SILYRMYLRYAERRGWKVEVLDYQAGDEAGIKDVSFLVKGENAYGYLKAENGIHRLVRVS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ GR HTS A+V V PE + DIRID RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSGGRRHTSFASVQVSPEIDDDIEIEIDPKDIRIDVFRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +++SQH+N+ AMK+L+++LY++E ++ E K ++G G +IR Sbjct: 265 IPTGIVVGCQTDRSQHKNKDMAMKMLKSKLYELELEKRKAEEEGKPKDEMGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +Y F ++ D+R N +++ +L G +D++I +L A + Sbjct: 322 SYVLFPYQQVKDNRSNKAYSRVDDILDGDLDEVIEDVLIAEKE 364 >gi|224282580|ref|ZP_03645902.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB 41171] gi|310287040|ref|YP_003938298.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium bifidum S17] gi|311063912|ref|YP_003970637.1| peptide chain release factor 2 (RF-2) PrfB [Bifidobacterium bifidum PRL2010] gi|313139738|ref|ZP_07801931.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB 41171] gi|309250976|gb|ADO52724.1| peptide chain release factor 2 with RF-1 domain [Bifidobacterium bifidum S17] gi|310866231|gb|ADP35600.1| PrfB Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium bifidum PRL2010] gi|313132248|gb|EFR49865.1| peptide chain release factor 2 [Bifidobacterium bifidum NCIMB 41171] Length = 375 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 101/353 (28%), Positives = 170/353 (48%), Gaps = 7/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I LK++ A +E ++ D + + +S +++ ++ + +D+ T++ Sbjct: 25 DIERLKSQIATLETEAAKPGLWDDPENAQKVTSRLSAAQAQLKRLNEANRRIEDVETLVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ L++ + +++ L D++S ++ IR+G GG +AA Sbjct: 85 LAQEEADADSLSEAQSEIGSIAQEL--DDMEIQTLLDGEYDERSAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ R Sbjct: 143 FAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S ++ Sbjct: 263 THLPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WGDQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +R+Y + + D R + + V G ID I + + +A E Sbjct: 321 MRSYVLHPYQMVKDLRTGCETSQTQAVFDGDIDAFIEAGIRWRHEQRRQAAEE 373 >gi|307706955|ref|ZP_07643754.1| peptide chain release factor 2 [Streptococcus mitis SK321] gi|307617669|gb|EFN96837.1| peptide chain release factor 2 [Streptococcus mitis SK321] Length = 325 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + + + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHEELVEQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LSELDKMMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|254461473|ref|ZP_05074889.1| peptide chain release factor 2 [Rhodobacterales bacterium HTCC2083] gi|206678062|gb|EDZ42549.1| peptide chain release factor 2 [Rhodobacteraceae bacterium HTCC2083] Length = 375 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 114/345 (33%), Positives = 171/345 (49%), Gaps = 5/345 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + + + ++ + Y KQE D +I + + Sbjct: 31 RLEEFNARVEDPDLWNDPDAAQKLMQERQALVDAMGTYTSIKQELSDQVEMIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + E + +L L D LEI +G GG+E+ + L R Sbjct: 91 --EDVVTEAEEALNALAKLAAAKELEALLDGEADSNDTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A R +KVE+ S S ++ G K ISG+ + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKRGYKVELQSESAGEEAGIKSAAYKISGQNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHAPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQIELDKRSALVNEAHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R N + VL G +D + L + A + ++ Sbjct: 328 YQMVKDLRTNHETSDTKGVLDGDLDGFMGATLAMNVAGKSRAEAQ 372 >gi|291276501|ref|YP_003516273.1| peptide chain release factor 2 [Helicobacter mustelae 12198] gi|290963695|emb|CBG39527.1| peptide chain release factor 2 [Helicobacter mustelae 12198] Length = 365 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 117/345 (33%), Positives = 191/345 (55%), Gaps = 10/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 LK R EIE + + + E S I ++ Y K D + Sbjct: 27 DTLKERLCEIEKLQQDPNFWNDAKRAGEIGKEKSKIERMLATYQNAKNSIDDARELFEIS 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D++ +L E +E+EI+++E E+ D + I+ I+ G GG+E+ + Sbjct: 87 ANDTDTLELLFAESQNLEQEIKKVEIEVM----LSGEHDGANAIVTIQPGAGGTESQDWG 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ R +K E+L D ++ G K + + G + MK ESGVHR+ R Sbjct: 143 SILYRMYLRWCERRGFKAEILDYQDGEEAGIKGVAFLVKGENAYGYMKTESGVHRLVRNS 202 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V PE I++DI +D+RIDT RASG+GGQH+N T+SA+RITH Sbjct: 203 PFDANTKRHTSFASVQVSPELDDNIEIDIEEKDLRIDTYRASGAGGQHINKTESAIRITH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +++SQH+N+ A+K+L+++LY++ER++ + + K +IG G +IR Sbjct: 263 LPTGIVVQCQNDRSQHKNKASALKMLQSKLYELEREKQNSSVATQEKSEIGWG---HQIR 319 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y S ++ D+R N+ +E +L G ID II +L + + Sbjct: 320 SYVLSPYQQVKDNRSNIAYSNVEAILDGDIDSIIEGVLISKTKEK 364 >gi|221128345|ref|XP_002163029.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 400 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 153/353 (43%), Positives = 227/353 (64%), Gaps = 11/353 (3%) Query: 9 ICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 I D+ ++ ++ ++ +S + + E + P + ++ +K++E +L + Sbjct: 43 IEDVMFKYKQLNEKLLDSKNLTPTEIKNYSSECHRMKPAVEIYNLLLKKREEIIELAALG 102 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D+ E+++ Q E+ A + I +LE + ++PKD DD + I+EIRAGTGG EAA Sbjct: 103 IDN---KEMKEFVQEEISACQVCIADLELRLLDSIIPKDKDDSNNAIMEIRAGTGGREAA 159 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 +F ++ MY++Y++ +WK EVL S++ DGG KE+ I G GVF ++K E GVHRVQ Sbjct: 160 IFAAEMLSMYDKYSSSNQWKFEVLDESESTDGGLKEVSVNIIGSGVFGKLKHEIGVHRVQ 219 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP TE+ GRVHTS TVAVLP+ IDV + ++D+++DT R+SG+GGQHVNTTDSAVR+ Sbjct: 220 RVPITESLGRVHTSTVTVAVLPQPESIDVVLNMKDVKVDTFRSSGAGGQHVNTTDSAVRL 279 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+G++V S++SQ +N+ RA+K+L A+LYD ER R+ ER R+ QIGSG RSER Sbjct: 280 THIPSGLVVAVQSQRSQIENKSRALKILSAQLYDFERTRVVQERVELRRTQIGSGHRSER 339 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSAS 356 IRTYNF Q RITDHRI TL L + G +++ L + + + S Sbjct: 340 IRTYNFPQDRITDHRIGETLSGLSDFMLGGSTFHKLVDMLRSH---EKLLSLG 389 >gi|227529549|ref|ZP_03959598.1| peptide chain release factor RF2 [Lactobacillus vaginalis ATCC 49540] gi|227350508|gb|EEJ40799.1| peptide chain release factor RF2 [Lactobacillus vaginalis ATCC 49540] Length = 356 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 113/361 (31%), Positives = 176/361 (48%), Gaps = 20/361 (5%) Query: 3 FLS----HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYA---AISPIISKISIYDQK 55 L + L AE E +M+E D + + + Sbjct: 1 MLPASGGLFDLDALDESIAENEQKMAEPGFWDDNVAAQKVINANNELKDKRDTFVKLRDN 60 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 Q ++ D + + + +ELE LL + D K+ ILE Sbjct: 61 IGNLQTSIELLELEPDDELQSEFEKSF----GETQKELEQYRLNQLLDGEYDA-KNAILE 115 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I G GG+EA + L RMY R+ + VE S ++ G K + I G F Sbjct: 116 IHPGAGGTEAQDWGAMLLRMYVRWGEQHGFNVETASYEAGEEAGIKSVTLLIKGHNAFGY 175 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGG 234 ++ E GVHR+ R+ +A+GR HTS A+V V+PE +++DI D+R+DT R+SG+GG Sbjct: 176 LRSEKGVHRLVRISPFDAAGRRHTSFASVDVMPELDESVNIDIDPSDLRVDTFRSSGAGG 235 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QH+N T+SAVRITHIPTGI+ + +E+SQ QNR+ AM +L+++LY++E ++ A +R+ Sbjct: 236 QHINKTESAVRITHIPTGIVTSSQAERSQLQNRVTAMNMLKSKLYELEEEKKAKKRAEIE 295 Query: 294 KLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 Q IG G +IR+Y F + D+R + + V+ G +D IN L ++ Sbjct: 296 GEQLEIGWG---SQIRSYVFHPYTLVKDNRSGHETHNGQAVMDGDLDPFINAYLQWKLSQ 352 Query: 351 M 351 Sbjct: 353 K 353 >gi|269958738|ref|YP_003328525.1| peptide chain release factor 2 [Anaplasma centrale str. Israel] gi|269848567|gb|ACZ49211.1| peptide chain release factor 2 [Anaplasma centrale str. Israel] Length = 338 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 174/344 (50%), Gaps = 16/344 (4%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEI 75 E++ R S + D + + + + ++ + ++E + ++ SDSE Sbjct: 2 EELDSRCSSASLWDDQENAKKLLSERARVEEVLASFRALEKEYAECVELLDVADESDSEF 61 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 D ++ ++ + D C L IR G GG+E+ + L RM Sbjct: 62 LDGLWSA----LTQLERRVSQKKAECMFSGEADGSGCFLVIRPGAGGTESNDWAAMLLRM 117 Query: 136 YERYA-ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 Y R+A + E++ D + G K + ISG G + K ESGVHR+ R+ ++S Sbjct: 118 YVRWAGTFHGFTTEIVDKIDGEAAGLKSVTVKISGNGAYGWAKTESGVHRLVRISPFDSS 177 Query: 195 GRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V V P +ID++I +D+RIDT RASG+GGQHVN T+SAVRITH+P+GI Sbjct: 178 SRRHTSFASVEVSPIADDKIDIEILEKDLRIDTYRASGAGGQHVNKTESAVRITHMPSGI 237 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYN 310 +V + +SQHQNR A +LR+RLY++E + + + + + IG G +IR+Y Sbjct: 238 VVQCQTSRSQHQNRAEAYSLLRSRLYEMELQEKEKKMAQEHDSRCDIGWG---HQIRSYV 294 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH--QAKM 351 R + D R ++ VL G +D I LT QA+ Sbjct: 295 MHPYRMVKDLRTGHETGDVDAVLDGDLDKFIAAALTYKLSQAQK 338 >gi|157164977|ref|YP_001467027.1| peptide chain release factor 2 [Campylobacter concisus 13826] gi|166223623|sp|A7ZE19|RF2_CAMC1 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|112800036|gb|EAT97380.1| peptide chain release factor 2 [Campylobacter concisus 13826] Length = 366 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 113/347 (32%), Positives = 189/347 (54%), Gaps = 14/347 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 D+K R EIE + + L +E IS +++K S +Q + ++L + Sbjct: 27 DDIKARLKEIEAIEQDPDFWQDIARAGALNKEKTKISNMLAKFSDANQAVSDAKELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N + + K + E + +L DD K+ I+ I G GG+E+ Sbjct: 87 NSENDEE-----TINSLFEDAKNLDEKIVNLEISMLLSGEDDGKNAIVSIHPGAGGTESN 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +KVE L + ++ G K++ + G + K E+G+HR+ Sbjct: 142 DWASMLYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFIVKGENAYGYFKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++GR HTS ++V V PE +I+++I +D++IDT RASG+GGQHVN T+SA+R Sbjct: 202 RTSPFDSAGRRHTSFSSVMVSPEVDDDIEIEIEEKDLKIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+NR AMK+L++RLY++E + ++ K +IG G Sbjct: 262 ITHIPTGIVVQCQNDRSQHKNRATAMKMLKSRLYELELMKQQEASNSVEKSEIGWG---H 318 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F ++ D+R + + +L G I +I +L A +A+ Sbjct: 319 QIRSYVLFPYQQVKDNRSGEAYSQTDAILDGDIKKMIEGVLIAQKAE 365 >gi|21909990|ref|NP_664258.1| peptide chain release factor 2 [Streptococcus pyogenes MGAS315] gi|21904179|gb|AAM79061.1| putative peptide chain release factor 2 [Streptococcus pyogenes MGAS315] Length = 326 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 181/333 (54%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K + ++ + ++ + D +++ + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDFLKEELEEN 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ + ++ LL + D + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LMQ----LDKITGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS A Sbjct: 117 NGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V+S+ ++ Sbjct: 177 SVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N L +++ V+ G I+ I+ L Sbjct: 294 DHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 326 >gi|145225030|ref|YP_001135708.1| peptide chain release factor 2 [Mycobacterium gilvum PYR-GCK] gi|189040001|sp|A4TDE5|RF2_MYCGI RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|145217516|gb|ABP46920.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium gilvum PYR-GCK] Length = 372 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 162/348 (46%), Gaps = 10/348 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HTV 65 + L+ R ++E S+ D + + + +S +++ ++ + DL + + Sbjct: 25 VDGLRGRIQQLESDASDPKLWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYEL 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + A+ + + + L D++ ++ IR+G GG +A Sbjct: 85 AAEEEGAGSSEAFAEADAELAKLREDI--AGMEVRTLLSGEYDEREALVNIRSGAGGVDA 142 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A + VEV +S ++ G K + + + E G HR+ Sbjct: 143 ADWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHRL 202 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAV Sbjct: 203 VRISPFDNQSRRQTSFADVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAV 262 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 263 RLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLERKRLEERAEMDAL-KGDGGS-SWG 320 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 321 NQMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNQK 368 >gi|315445399|ref|YP_004078278.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp. Spyr1] gi|315263702|gb|ADU00444.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium sp. Spyr1] Length = 372 Score = 215 bits (546), Expect = 1e-53, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 162/349 (46%), Gaps = 10/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 + L+ R ++E S+ D + + + +S +++ ++ + DL + Sbjct: 24 DVDGLRGRIQQLESDASDPKLWDDQARAQKVTSDLSHAQNELRRVEELRSRLDDLPVLYE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + A+ + + + L D++ ++ IR+G GG + Sbjct: 84 LAAEEEGAGSSEAFAEADAELAKLREDI--AGMEVRTLLSGEYDEREALVNIRSGAGGVD 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A + VEV +S ++ G K + + + E G HR Sbjct: 142 AADWAEMLMRMYIRWAEQHDYPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSA Sbjct: 202 LVRISPFDNQSRRQTSFADVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 262 VRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLERKRLEERAEMDAL-KGDGGS-SW 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 320 GNQMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNQK 368 >gi|332522300|ref|ZP_08398552.1| peptide chain release factor 2 [Streptococcus porcinus str. Jelinkova 176] gi|332313564|gb|EGJ26549.1| peptide chain release factor 2 [Streptococcus porcinus str. Jelinkova 176] Length = 327 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 179/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K + + ++ + D ++ E Sbjct: 1 MTEPDFWNDTISAQKTSQELNELKVKFDTFHNMENLSEETELYMEMLEEDESVK----GE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ ++ LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 57 LEESLLKLDQILAAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFQGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V+S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + +++ V+ G ID I+ L Sbjct: 294 DHRTNFEVAQVDKVMDGDIDGFIDAYLKWR 323 >gi|15639564|ref|NP_219014.1| peptide chain release factor 2 (prfB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025803|ref|YP_001933575.1| peptide chain release factor 2 [Treponema pallidum subsp. pallidum SS14] gi|6093958|sp|O83585|RF2_TREPA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|3322871|gb|AAC65552.1| peptide chain release factor 2 (prfB) [Treponema pallidum subsp. pallidum str. Nichols] gi|189018378|gb|ACD70996.1| peptide chain release factor 2 [Treponema pallidum subsp. pallidum SS14] gi|291059953|gb|ADD72688.1| peptide chain release factor 2 [Treponema pallidum subsp. pallidum str. Chicago] Length = 368 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 167/342 (48%), Gaps = 11/342 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R A +E + + A + + + + + ++E DL + Sbjct: 20 DVAAYEARIATLEAAAAAPDFWSERARAEALLAELKTLRATLEPWRALRRESADLRALYE 79 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + ++ L + R E + LL + D + I +G GG EA Sbjct: 80 LAREAQDASLEPELSSLFSDISARFEEASLTRLLHEEV--DRLDAFVTIHSGAGGVEACD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R + V ++ +++ GG K + I G F +K E+GVHR+ R Sbjct: 138 WAQMLMRMYTRWAERRSFCVHIVDLLESE-GGVKSVTLKICGSHAFGFLKGETGVHRLVR 196 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS + V P ++V I ED+R+DT R+ G+GGQHVN TDSAVRI Sbjct: 197 ISPFDSAARRHTSFTSTYVFPVLDDHVEVHIRSEDMRVDTYRSGGAGGQHVNKTDSAVRI 256 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRS 303 TH+PTGI+V +E+SQ NR A+ +LRARLY ER++ E R A+ K I G+ Sbjct: 257 THLPTGIVVTCQNERSQISNRATALSLLRARLYAYERQKKQQEHQRFASEKKDISWGN-- 314 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y F + DHR + V+ G ++ I L Sbjct: 315 -QIRSYVFHPYTMVKDHRSKCETGNIHAVMDGALEPFIRSYL 355 >gi|222823300|ref|YP_002574873.1| peptide chain release factor 2 [Campylobacter lari RM2100] gi|254790909|sp|B9KEY7|RF2_CAMLR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|222538521|gb|ACM63622.1| peptide chain release factor 2 [Campylobacter lari RM2100] Length = 366 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 186/344 (54%), Gaps = 8/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++K R EIE + + + I + + Y+ D + Sbjct: 27 EEIKARLKEIENLENSPSFWSDVKQAGIIGKEKTKISNLLKNYENAFNALNDASELFDLA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 NS++++ + + +L + +L +D K+ I+ I G GG+E+ + Sbjct: 87 NSENDL--DTIQALFDDAPNLEDLIVSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 145 SMLYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS ++V V P +I+++I +DIRID RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFSSVMVSPELDDDIEIEIEDKDIRIDYYRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +P+GI+V +++SQH+N+ A K+L++RLY++E + +E +++ K +IG G +IR Sbjct: 265 MPSGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDEANSSEKSEIGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F ++ D R N +++ +L G I +I +L A +A+ Sbjct: 322 SYVLFPYQQVKDTRSNEAFSQVDNILDGDIKKMIEGVLIAQKAQ 365 >gi|269128206|ref|YP_003301576.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183] gi|268313164|gb|ACY99538.1| peptide chain release factor 2 [Thermomonospora curvata DSM 43183] Length = 378 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 170/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A++ ++ + + +S + ++++ +Q +D+ T+ Sbjct: 25 DLDAMRAEIAKLREESADPDLWSDQERAQQVTRRLSYLENELNRVTSLRQRLEDVATLYE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D++ R A E+ ++ K+I++LE D + ++ I A GG +A Sbjct: 85 LAEEMDDADTRAEADAELESLRKDIQQLEVRTLMS----GEYDHREALITINAQAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A + E+ +S ++ G K + + ++ E G HR+ Sbjct: 141 ADWAQQLQRMYLRWAERHGYPTEIYETSYAEEAGIKSTTFAVKAPYAYGTLRGEHGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A + V+P V++ D+RID R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGLDVVPVVEQSDHVEVDENDLRIDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V +E+SQ QN+ AM VL+A+L + +R+ A + + R G+ Sbjct: 261 RITHIPTGIVVSCQNERSQLQNKATAMAVLKAKLLERKRQEEAAKMADLRGE--GTSSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR Y + + D R + VL G ID+ I + + + Sbjct: 319 TQIRNYVLHPYQIVKDLRTGVESGNPAAVLDGEIDEFIEAEIRWLRQR 366 >gi|331695045|ref|YP_004331284.1| peptide chain release factor 2 [Pseudonocardia dioxanivorans CB1190] gi|326949734|gb|AEA23431.1| Peptide chain release factor 2 [Pseudonocardia dioxanivorans CB1190] Length = 369 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 89/349 (25%), Positives = 159/349 (45%), Gaps = 8/349 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++E + + + + + ++ ++ + ++ DL + Sbjct: 24 DLPALRVEIADLEEQAGQPDLWNDTETAQKVTSRLAHANGELRRVEDLRRRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + +A + + + L D++ ++ IR+ GG +AA Sbjct: 84 LAEDEGDESAIADADRDRVALRAEI--ESLEVRTLLSGEYDEREALVTIRSEAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + V+V +S ++ G K + + + E G HR+ R Sbjct: 142 FAEMLMRMYLRWAERHGYGVDVYDTSYAEEAGIKSATFQVHAPYAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V + +DI +D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAGVEVAPVVESTDHIDIDEKDLRVDVYRSSGPGGQGVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QN+ AM VL+A+L + +R+ + + G+ + Sbjct: 262 THIPTGIVVSCQNERSQIQNKATAMVVLQAKLLERKRQEERALMDSLKDTGSSWGN---Q 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +R+Y + + D R + + VL G ID I + + + Sbjct: 319 MRSYVLHPYQMVKDLRTDFEVGNPGAVLDGDIDGFIEAGIRWRRQQQAE 367 >gi|256545449|ref|ZP_05472811.1| peptide chain release factor 2, programmed [Anaerococcus vaginalis ATCC 51170] gi|256398845|gb|EEU12460.1| peptide chain release factor 2, programmed [Anaerococcus vaginalis ATCC 51170] Length = 369 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 117/344 (34%), Positives = 174/344 (50%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVI 66 L EIE + E D K E A +S + K+E +D L +I Sbjct: 28 EKLNTEIKEIEKQTLEENFWDDSQKAQEIMADLSDKKDNFKTFTSFKEELKDQSDLLDII 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N D E + + + +++KEI D + L I AG GG EA Sbjct: 88 EESNEDLESLNEIEEILNSLKKEI----GSFKIKTELDGEYDKNNAYLVIHAGAGGLEAT 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R +K +V ++ + GG K + G + +K E GVHR+ Sbjct: 144 DWAEMLMRMYTRFFEKRNFKFDVTDLNNEEAGGIKSATIHVKGSFAYGYLKGEKGVHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ ++S R HTS A+V + PE ++ V+I +D+RIDT RASG+GGQHVN TDSAVR Sbjct: 204 RISPFDSSKRRHTSFASVDIFPELNDDMSVEIDPKDLRIDTYRASGAGGQHVNKTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDR 302 ITHIPTG++ + +E+SQ QN+ AMK+L A+L ++ + + + QI G+ Sbjct: 264 ITHIPTGVIASSQAERSQTQNKETAMKLLLAKLTQIKEEEHREKIEDIQGNYTQIAWGN- 322 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + +E V+ G ID I+ L Sbjct: 323 --QIRSYVFHPYTLVKDHRTNFEVGNVESVMDGDIDGFIDEYLA 364 >gi|312135785|ref|YP_004003123.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis OL] gi|311775836|gb|ADQ05323.1| hypothetical protein Calow_1789 [Caldicellulosiruptor owensensis OL] Length = 372 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 119/353 (33%), Positives = 176/353 (49%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L+N +E S + I + KI + + + +DL Sbjct: 21 MRVSLDIDRLENELKWLESETSNPDFWQDLENSQKVLQKIKRLKDKIERFQKLYSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + S E E+ ++ + +L D + IL I AG GG Sbjct: 81 KVLTEL--SLEEGNHDMAEELEKELLDLERKIEDFKIEVLLNGPYDKNNAILSIHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+AA + +KVE L ++ G K + I G + +K E GV Sbjct: 139 TEAQDWAEMLLRMYTRWAAKKGYKVETLDILPGEEAGIKNVTVRIVGENAYGYLKAEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT RASG+GGQHVN T+ Sbjct: 199 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 259 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTEIG 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 319 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 368 >gi|168213727|ref|ZP_02639352.1| peptide chain release factor 2 [Clostridium perfringens CPE str. F4969] gi|170714817|gb|EDT26999.1| peptide chain release factor 2 [Clostridium perfringens CPE str. F4969] Length = 323 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETAKEIIN 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + + +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N+ + V+ G ID+ I L Sbjct: 296 HRTNVETSNVNGVMDGDIDNFIIAYL 321 >gi|282865194|ref|ZP_06274247.1| peptide chain release factor 2 [Streptomyces sp. ACTE] gi|282560117|gb|EFB65666.1| peptide chain release factor 2 [Streptomyces sp. ACTE] Length = 368 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 159/345 (46%), Gaps = 7/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDALRADIAALEEQAAAPSLWDDPEAAQKITSRLSHLQAEVRKTEALRGRIDDLGVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + LA+ E + E + L D + ++ IRA GG +AA Sbjct: 85 LAEDEGDADALAEAEAELVSVRKALDE--MEVRTLLSGEYDAREAVVNIRAEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K E+ +S ++ G K T+ + + E G HR+ R Sbjct: 143 FAEKLQRMYLRWAEQHGYKTEIYETSYAEEAGIKSTTFTVQVPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMNALKGD--GGNSWGNQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y + + D R + E V G ID I + + Sbjct: 321 MRSYVLHPYQMVKDLRTEFEIGNPEAVFNGEIDGFIEAGIRWRKQ 365 >gi|282903384|ref|ZP_06311275.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C160] gi|282596339|gb|EFC01300.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus C160] Length = 331 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 167/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDGEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G + I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDVGPFIESYLRQ 326 >gi|257438202|ref|ZP_05613957.1| peptide chain release factor 2 [Faecalibacterium prausnitzii A2-165] gi|257199279|gb|EEU97563.1| peptide chain release factor 2 [Faecalibacterium prausnitzii A2-165] Length = 373 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 172/343 (50%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R E+E MS D + + + + K++ +++ + D T++ Sbjct: 27 IDASRKRVQELEHTMSRPGFYDDAELSKKVFDEVGDLKGKLNRFEKLQGLYDDAETMLVM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + + E E + + D + IL AGTGG+EA + Sbjct: 87 LDEEYDPDMVPEAEEAVNAVGKAVDEL--QLMTMLNGEYDHSNAILTFHAGTGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY ++A VEVL D D+ G K + G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYNKWAQAHGMTVEVLDYQDGDEAGMKSASMMVKGANAYGLLKSENGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A++ V+PE I VDI EDI + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFASLEVMPELDNTIQVDIRPEDIEMQVFRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTG++V +++SQ QNR AM++L+A+LY + +++ ++ + + +I G Sbjct: 265 HKPTGVVVSCQTQRSQFQNRDYAMEMLKAKLYQIAKQQHMDKIDDIKGVQNEIAWG---H 321 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N ++ V+ G +D I L A Sbjct: 322 QIRSYVFMPYTMVKDHRTNYETGNVDAVMDGDLDGFIFAYLKA 364 >gi|160893549|ref|ZP_02074333.1| hypothetical protein CLOL250_01103 [Clostridium sp. L2-50] gi|156864534|gb|EDO57965.1| hypothetical protein CLOL250_01103 [Clostridium sp. L2-50] Length = 329 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 106/327 (32%), Positives = 171/327 (52%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + D K T + + + Y + +Q+ D+ T+I + + + +I Sbjct: 1 MEQPGFWDDVAKSTSVSRQLKKLQDSLEEYQKLEQDFSDIETLIQMAEEEGDSSMIEEIG 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + LL D ++ + AG GG+E+ + L+RMY R+A Sbjct: 61 EMLTAFQKEF--ENYRISLLLSGEFDGYDAVMTLHAGAGGTESCDWTSMLYRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL + D+ G K + ISG+ + +K E GVHR+ R+ A+G+ TS A Sbjct: 119 HGFKVEVLDYLEGDEAGIKSVTIQISGQNAYGYLKSEKGVHRLVRISPFNAAGKRQTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE E +VDI +D+RIDT R+SG+GGQH+N T SAVRITHIPTGI+V +E+ Sbjct: 179 SCDVIPEIEEDLEVDINEDDLRIDTYRSSGAGGQHINKTSSAVRITHIPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+++LY ++++ ++ S R +I +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKSKLYLIKKQENLDKISDIR-GEILENGFGSQIRSYVMQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R + VL G +D +N L Sbjct: 298 RTGEESGNVAAVLDGELDGFMNAYLKW 324 >gi|54026461|ref|YP_120703.1| peptide chain release factor 2 [Nocardia farcinica IFM 10152] gi|76363350|sp|Q5YR52|RF2_NOCFA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|54017969|dbj|BAD59339.1| putative peptide chain release factor 2 [Nocardia farcinica IFM 10152] Length = 372 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 165/347 (47%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I +L+ R E+E + ++ + + +S ++ + ++ +DL + Sbjct: 24 DIEELRRRIDELEHQAADPDLWNDQDHAQRVTSELSHAQGELRRVEDLRRRLEDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + A +E E+ + + L D + ++ IR+G GG +AA Sbjct: 84 LAEGEEGEARTAALEEADAERAALHSDVEAMEVRTLLSGEYDKREALVNIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWADRHGYPVEVYDTSYAEEAGIKSATFAVKTPYAYGTLSVEMGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V VLP +++P +IR+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQGRRQTSFAEVEVLPVVETTDHIEVPETEIRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +EKSQ QN++ AM+VL+A+L + +R+ E A + + S Sbjct: 264 ITHIPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRQEERAEMDALKTNEGAS--WGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R N + VL G ID I + + Sbjct: 322 QMRSYVLHPYQMVKDLRTNYEVNNPSAVLNGDIDGFIESGIRWRMRE 368 >gi|85708766|ref|ZP_01039832.1| protein chain release factor B [Erythrobacter sp. NAP1] gi|85690300|gb|EAQ30303.1| protein chain release factor B [Erythrobacter sp. NAP1] Length = 375 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 167/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D K++ E + ++ ++ + + + + Sbjct: 30 RRLDELNARVQDPTLWDDPKEAQKISREQKQLEDAVNTVNEISAEMGDAVEFIEM----- 84 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++E + + L +++ + L D LEI AG GG+E+ + Sbjct: 85 GEAEGEESIVNDGLKSLEKLAARADADKVQALLSGEADGNDTYLEIHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 LFRMY R+A R +KVE + D G K + G + K ESGVHR+ R+ Sbjct: 145 MLFRMYGRWAERRGFKVETVEYQAGDQAGIKSATLLLKGDNAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ + HTS ++V V P + D++IDT RASG+GGQHVNTTDSAVRITH Sbjct: 205 YDSAAKRHTSFSSVWVYPVIDDDIDIEINPADLKIDTYRASGAGGQHVNTTDSAVRITHQ 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +L+ARL++ E S K +IG G +I Sbjct: 265 PTGIVVASQNDRSQHKNRATAMNMLKARLFEREMAEREAAASGEYQEKSEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R +T + VL G IDD I+ L Sbjct: 322 RSYVLQPYQMVKDLRTGVTSSSPDRVLDGDIDDYISAALAQR 363 >gi|254572401|ref|XP_002493310.1| hypothetical protein [Pichia pastoris GS115] gi|238033108|emb|CAY71131.1| hypothetical protein PAS_chr3_1249 [Pichia pastoris GS115] gi|328352673|emb|CCA39071.1| Peptide chain release factor 1 [Pichia pastoris CBS 7435] Length = 405 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 143/356 (40%), Positives = 217/356 (60%), Gaps = 12/356 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+ L ++ ++E ++S S Y + +Y+ + + + + ++ + ++L ++ Sbjct: 43 KKASRLSSQLKDLESKLSSSDEFS-YQD-SRDYSLLVSTVETYNEFLRETENVEELQRML 100 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D +++ + E+ +++ L +++ LLP DK CILE+R G GGSEA Sbjct: 101 HE---DPSLKEEIESELTQAAPKLKRLTSKLKTKLLPPHEFADKPCILELRPGIGGSEAN 157 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRV 185 LF DL MYE+YA +W E++S + + G G + I+ G ++R++FE+GVHRV Sbjct: 158 LFTEDLLSMYEKYAQHHRWSYEIISRNPHPSGNGLVDAAIVINEPGSYNRLRFEAGVHRV 217 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI----DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 QRVPATE+ GR HTS A V VLP+ E + +DIRID MRASGSGGQHVNTT+ Sbjct: 218 QRVPATESKGRTHTSTAAVVVLPKIDEDDTSLNRTFLPDDIRIDVMRASGSGGQHVNTTE 277 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+GI+V E+SQH+N+ +A+ +L+ARL + ER + A RK Q+ S Sbjct: 278 SAVRVTHIPSGIVVLIQDERSQHKNKAKALTILKARLAEKERVEKEEKELAERKGQVSST 337 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 DRS++IRTYNFSQ RITDHR +L+ +E L G +D+II+ LL A+ Sbjct: 338 DRSDKIRTYNFSQNRITDHRCGYSLHNVEGCLNGYKLDEIIDALLDKETAEKSDEL 393 >gi|319783261|ref|YP_004142737.1| hypothetical protein Mesci_3567 [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169149|gb|ADV12687.1| hypothetical protein Mesci_3567 [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 376 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 111/346 (32%), Positives = 168/346 (48%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + +R ++ + KL E ++ I+ + Q ++ L + Sbjct: 26 DQAIKRLEYLNVRAEDASLWNEPLEAQKLMRERQSLEEGIASVKGLTQALEDNIGLIELG 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + I + + L D LEI AG GG+E+ Sbjct: 86 EEERDEGVIAEAEAAIRSMQGEAKA-----RQVETLLSGEADSNDTYLEIHAGAGGTESQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R++KVEVL D ++ G K I G + MK ESGVHR+ Sbjct: 141 DWASMLLRMYTRWAERRRFKVEVLEMHDGEEAGIKSATLMIKGHNAYGWMKTESGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS A+V V P I++D+ D+RIDT R+SGSGGQHVNTTDSAVR Sbjct: 201 RISPYDSNARRHTSFASVWVYPVIDDTIEIDVSESDVRIDTYRSSGSGGQHVNTTDSAVR 260 Query: 246 ITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA--NERSANRKLQIGSGDR 302 ITH+ TGI + +E+SQH+N+ +A ++LR+RLY+ E K+ + K IG G Sbjct: 261 ITHLATGIAVACQAERSQHKNKAKAWEMLRSRLYEEELKKREAVANATEASKSDIGWG-- 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + VL G +DD + L+ Sbjct: 319 -HQIRSYVLQPYQLVKDLRTGVESTSPSSVLDGDLDDFMEASLSQR 363 >gi|168205594|ref|ZP_02631599.1| peptide chain release factor 2 [Clostridium perfringens E str. JGS1987] gi|169344216|ref|ZP_02865198.1| peptide chain release factor 2 [Clostridium perfringens C str. JGS1495] gi|169297675|gb|EDS79775.1| peptide chain release factor 2 [Clostridium perfringens C str. JGS1495] gi|170662903|gb|EDT15586.1| peptide chain release factor 2 [Clostridium perfringens E str. JGS1987] Length = 323 Score = 214 bits (545), Expect = 1e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETAKEIIS 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + + +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N+ + V+ G ID+ I L Sbjct: 296 HRTNVETSNVNGVMDGDIDNFIIAYL 321 >gi|284023776|ref|ZP_06378174.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus 132] Length = 331 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 168/334 (50%), Gaps = 17/334 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + + ++ + + DL Sbjct: 1 MMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K LL D + ILE+ G GG+E+ + LFRMY+R Sbjct: 61 EQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH P+GI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIRPFIESYLRQ 326 >gi|82703392|ref|YP_412958.1| peptide chain release factor 2 [Nitrosospira multiformis ATCC 25196] gi|82411457|gb|ABB75566.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrosospira multiformis ATCC 25196] Length = 310 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 107/316 (33%), Positives = 175/316 (55%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + ++ + ++ Q+ ++L + + + D+ ++ +A+ + + Sbjct: 1 MGREKKILESVVINLETISRQLQDARELFEMAEEEDDDATLQSVARDISH-----LEKAV 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 +++ + + + D +C ++I++G+GG+EA + L RMY RY R ++VEV+ S Sbjct: 56 SDMEFRRMFSNPMDTNNCFVDIQSGSGGTEAQDWAAMLERMYLRYCERRGYQVEVMEESP 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 + G K ISG + ++ E+GVHR+ R ++ R HTS A+V V PE E Sbjct: 116 GEVAGIKSASLKISGEYAYGYLRTETGVHRLVRKSPFDSGNRRHTSFASVFVYPEVDETI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R+DT RASG+GGQH+N TDSAVRITH PTGI+V S +SQH+NR AM + Sbjct: 176 EIDINPADLRVDTFRASGAGGQHINKTDSAVRITHNPTGIVVQCQSGRSQHRNRADAMAM 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L++RLY+ E ++ E+ A K IG G +IR+Y Q RI D R + + Sbjct: 236 LKSRLYEAELRKRNEEKQAIEDTKTDIGWG---HQIRSYVLDQARIKDLRTGVESGNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 +L G +DD I L Sbjct: 293 ILDGDLDDFIEASLKQ 308 >gi|312140591|ref|YP_004007927.1| peptide chain release factor prfb [Rhodococcus equi 103S] gi|325675787|ref|ZP_08155471.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707] gi|311889930|emb|CBH49247.1| peptide chain release factor PrfB [Rhodococcus equi 103S] gi|325553758|gb|EGD23436.1| peptide chain release factor RF2 [Rhodococcus equi ATCC 33707] Length = 367 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 166/346 (47%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E + S+ + + + +S S++ ++ + D+ + Sbjct: 24 DVEELRRRIDELEHQASDPELWNDQEHAQQVTSQLSHAQSELRRVEELRSRLDDMAVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + A + A ++R + + D + ++ IRAG GG +AA Sbjct: 84 LAEEEG---PEAVADAHAERAQLRTDIEAMEVKTMLSGEYDQRDALVNIRAGAGGVDAAD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R + VEV +S ++ G K + + + E G HR+ R Sbjct: 141 WAEMLMRMYIRWAEKRGYGVEVYDTSYAEEAGIKSATFAVKAPYSYGTLSIEMGTHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +DI D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 201 ISPFDNQGRRQTSFAEVEVLPVVETTDHIDIDENDVRVDVYRSSGPGGQSVNTTDSAVRL 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +EKSQ QN++ AM+VL+A+L + +R+ E A K GS + Sbjct: 261 THVPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLERKRQEERAEMDAL-KGDGGS-SWGNQ 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID I + ++ Sbjct: 319 MRSYVLHPYQMVKDLRTEYEVNNPSAVLDGEIDGFIEAGIRWRMSE 364 >gi|222475212|ref|YP_002563628.1| peptide chain release factor 2 (prfB) [Anaplasma marginale str. Florida] gi|255003190|ref|ZP_05278154.1| peptide chain release factor 2 (prfB) [Anaplasma marginale str. Puerto Rico] gi|222419349|gb|ACM49372.1| peptide chain release factor 2 (prfB) [Anaplasma marginale str. Florida] Length = 338 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 174/344 (50%), Gaps = 16/344 (4%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEI 75 E++ R S + D + + + + ++ + ++E + ++ SDSE Sbjct: 2 EELDSRCSSASLWDDQENAKKLLSERARVEEVLASFRALEKEYAECVELLDVADESDSEF 61 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 D ++ ++ + D C L IR G GG+E+ + L RM Sbjct: 62 LDGLWSA----LTQLERRVSQKKAECMFSGEADGSGCFLVIRPGAGGTESNDWAAMLLRM 117 Query: 136 YERYA-ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 Y R+A + E++ D + G K + ISG G + K ESGVHR+ R+ ++S Sbjct: 118 YIRWAGTFHGFTTEIVDKIDGEAAGLKSVTVKISGNGAYGWAKTESGVHRLVRISPFDSS 177 Query: 195 GRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS A+V V P +ID++I +D+RIDT RASG+GGQHVN T+SAVRITH+P+GI Sbjct: 178 SRRHTSFASVEVSPIADDKIDIEILEKDLRIDTYRASGAGGQHVNKTESAVRITHMPSGI 237 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYN 310 +V + +SQHQNR A +LR+RLY++E + + + + + IG G +IR+Y Sbjct: 238 VVQCQTSRSQHQNRAEAYSLLRSRLYEMELQEKEKKMAQEHDSRCDIGWG---HQIRSYV 294 Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH--QAKM 351 R + D R ++ VL G +D I LT QA+ Sbjct: 295 MHPYRMVKDLRTGHETGDVDAVLDGDLDKFIAAALTYKLSQAQK 338 >gi|78213950|ref|YP_382729.1| peptide chain release factor 2 [Synechococcus sp. CC9605] gi|78198409|gb|ABB36174.1| peptide chain release factor 2 [Synechococcus sp. CC9605] Length = 356 Score = 214 bits (545), Expect = 2e-53, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 162/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ D ++ + + +++S + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWDDQQNAQKQMRRLDEVKAQLSQLGGWRGAVDDAQATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + E ++R+ + L D + +L I AG GG++A Sbjct: 67 LYELEPD--EDLLQEAQNGLNQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E +DIP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKIEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I + Sbjct: 245 LHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R N ++ V+ G +D I+ L Sbjct: 304 IRNYVFQPYQMVKDLRTNEETNDVQAVMDGALDPFIDASLRQ 345 >gi|223038905|ref|ZP_03609197.1| peptide chain release factor 2 [Campylobacter rectus RM3267] gi|222879878|gb|EEF14967.1| peptide chain release factor 2 [Campylobacter rectus RM3267] Length = 366 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 182/346 (52%), Gaps = 14/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K R EIE ++ K + +E IS I++ + +DL+ + Sbjct: 27 ESIKTRLKEIEELENDQNFWQDIAKAGAIGKEKTKISNILNNFLNAKSAVDDAKDLYELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N + + A E+ + + +L DD K+ I+ I G GG+E+ Sbjct: 87 NSENDEE-----TINSLFAEAGELEDKIVNLEISMLLSGEDDGKNAIVTIHPGAGGTESN 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFIVKGVNAYGYLKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++GR HTS +V V P +I+++I +D++IDT RA G+GGQHVN T+SAVR Sbjct: 202 RTSPFDSAGRRHTSFTSVMVSPEIDDDIEIEIDEKDLKIDTYRAGGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ AMK+L++RLY++E + + K +IG G Sbjct: 262 ITHAPTGIVVQCQNDRSQHKNKATAMKMLKSRLYELELMKQQEAAGSIEKSEIGWG---H 318 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y F ++ D+R + + +L G I +I +L + ++ Sbjct: 319 QIRSYVLFPYQQVKDNRSGEAYSQTDAILDGDIKKLIEGVLVSQKS 364 >gi|329896805|ref|ZP_08271721.1| peptide chain release factor 2 [gamma proteobacterium IMCC3088] gi|328921560|gb|EGG28940.1| peptide chain release factor 2 [gamma proteobacterium IMCC3088] Length = 321 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 106/323 (32%), Positives = 167/323 (51%), Gaps = 12/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E AA+ I+ I + + DL ++ N + D+ + Sbjct: 3 DDPERAQALGKERAALEAIVVSIETLTEGANDTADLLDLVVAENDVDSLEDIKSEIQKLL 62 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 + + + D+ + L+I++G+GG+EA + L RMY R+ + +K Sbjct: 63 AILDE-----LEFRRMFSGEVDENNAYLDIQSGSGGTEAQDWAEMLLRMYLRWGEAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 E++ S + G K G F ++ E+GVHR+ R ++ R HTS A+V V Sbjct: 118 TELIECSAGEVAGIKSATIKFDGDYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFASVFV 177 Query: 207 LPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE + +++I D+R+DT RASG+GGQHVN TDSAVR+TH+PTG++V +E+SQHQ Sbjct: 178 SPEIDDNIEIEINPADLRVDTYRASGAGGQHVNKTDSAVRLTHLPTGVVVQCQTERSQHQ 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 NR AMK+LR +LY++E + + ++ + K IG G +IR+Y Q RI D R Sbjct: 238 NRDNAMKLLRGKLYELEMLKRSEKQQALEDSKADIGWG---SQIRSYVLDQSRIKDLRTG 294 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G ID I L Sbjct: 295 VETSNTQAVLDGAIDMFIQASLK 317 >gi|18311152|ref|NP_563086.1| peptide chain release factor 2 [Clostridium perfringens str. 13] gi|18145835|dbj|BAB81876.1| peptide chain release factor 2 [Clostridium perfringens str. 13] Length = 323 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFRNLNERIDDVEVLKELMEENDEETAKEIIS 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + + +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N+ + V+ G ID+ I L Sbjct: 296 HRTNVETSNVNGVMDGDIDNFIIAYL 321 >gi|160941606|ref|ZP_02088937.1| hypothetical protein CLOBOL_06506 [Clostridium bolteae ATCC BAA-613] gi|158435500|gb|EDP13267.1| hypothetical protein CLOBOL_06506 [Clostridium bolteae ATCC BAA-613] Length = 339 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 102/327 (31%), Positives = 170/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D + T + ++ Y +Q+ +D+ +I +++ L Sbjct: 1 MEEPGFWDEPEQSTRMVRESKNLKDEVDTYRALEQQYEDIQVMIQMGYEENDS-SLIPEI 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +E+ LEN LLL + D + IL + AG GG+E+ + L+RMY R+A Sbjct: 60 EEMLEQFKETLENMRMKLLLSGEYDS-NNAILRLNAGAGGTESCDWCSILYRMYCRWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +K VL D ++ G K + I G + ++ E GVHR+ R+ ++G+ TS Sbjct: 119 KGFKAHVLDFLDGEEAGIKSVTVQIDGENAYGYLRSEHGVHRLVRISPFNSAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P E D+++ +DIR+DT R+SG+GGQH+N T SA+RITH PTGI+V +E+ Sbjct: 179 SCDVMPNIEEDIDIEVNPDDIRVDTYRSSGAGGQHINKTSSAIRITHFPTGIVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ +AM++L+A+L V+++ A + + R + +IR+Y + DH Sbjct: 239 SQFQNKEKAMQMLKAKLLMVKQEEQAAKAAGIR-GDVKDIGWGSQIRSYVLQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ VL G ID+ I+ L Sbjct: 298 RTGEESGNVDAVLDGAIDNFISAYLRW 324 >gi|320531255|ref|ZP_08032234.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 171 str. F0337] gi|320136522|gb|EFW28491.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 171 str. F0337] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 168/349 (48%), Gaps = 6/349 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R AE+ + S D +A+S + + + + +DL ++ Sbjct: 26 EALRARIAELSEQASAPDLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + +E+ L D + ++ IR+G GG +AA F Sbjct: 86 GEEEGEDAAEILAEAEADLSAISKDLSELEIRTLLSGEYDPRDAVITIRSGAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A ++ V+VL++S ++ G K + I + + E G HR+ R+ Sbjct: 146 AEMLLRMYTRWAERHEYPVKVLNTSYAEEAGLKSVTFEIHAPYAYGTLSVEGGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P + +DIP DIRID R+SG GGQ VNTTDSAVRIT Sbjct: 206 SPFDNQGRRQTSFAAVEVIPLIESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRIT 265 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTG++V+ EKSQ QNR AM+VL++RL ++++ ++ S +++ Sbjct: 266 HLPTGLVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQQEEDAKKKELAGDVKAS--WGDQM 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+Y + + + D R N + + V G ID I+ + + + Sbjct: 324 RSYVLNPYQMVKDLRTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQETAE 372 >gi|239917286|ref|YP_002956844.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus luteus NCTC 2665] gi|239838493|gb|ACS30290.1| bacterial peptide chain release factor 2 (bRF-2) [Micrococcus luteus NCTC 2665] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 108/357 (30%), Positives = 180/357 (50%), Gaps = 16/357 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + +K AE+E + S D + + + +S + + + +DL T+ Sbjct: 25 DLDRIKADIAELEQQASAPDLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + D A E+ +I K + ELE D + ++ IRAG GG +A Sbjct: 85 LAAEEDEPSLLDDANQELTSIRKALEELEVVTL----LSGEYDQRDAVVTIRAGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R W +V+ +S ++ G K + ++ F + E+G HR+ Sbjct: 141 ADFAETLMRMYLRWAEQRGWSTKVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++ ++IP +I++D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLIESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 R+TH+PTGI+V+ +EKSQ QNR A++VL++RL + E A +K G Sbjct: 261 RMTHLPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLLR----KAEEDAKKKEMAGDVKAS 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + + D R V G+IDD ++ + +A+ + +A E Sbjct: 317 WGDQMRSYVLNPYQMVKDLRTGHEEGNPSSVFDGHIDDFVDAGIRW-RAEQVKAAQE 372 >gi|148240661|ref|YP_001226048.1| peptide chain release factor 2 [Synechococcus sp. WH 7803] gi|147849200|emb|CAK24751.1| Protein chain release factor B [Synechococcus sp. WH 7803] Length = 356 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ D ++ + + + + D + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWDDQQNAQKQMRRLDEVKAMLQQLDTWQGAVSDAQATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E D E + ++R + L D + +L I AG GG++A Sbjct: 67 LY--DLEPDDDMLGEAQSGLTQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDRGMKVTVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ ++D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 245 LHVPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G +D I LL Sbjct: 304 IRNYVFHPYQMVKDLRTQEETNDVQGVMDGDLDPFIQALLRQ 345 >gi|126657098|ref|ZP_01728269.1| peptide chain release factor 2 [Cyanothece sp. CCY0110] gi|126621641|gb|EAZ92351.1| peptide chain release factor 2 [Cyanothece sp. CCY0110] Length = 358 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 161/344 (46%), Gaps = 7/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK +E ++ D + ++ + S++ Y Q ++ +D + Sbjct: 13 DLPALKANIKNLENTAAQPQFWDEPETAQKTLQKLNDLKSQLEQYQQWCEQLEDTEAIAE 72 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + E ++ + L D K +L I AG GG++A Sbjct: 73 LLELEDDT--TLRREAQENITQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KV + S+ D+ G K I G F +K E G HR+ R Sbjct: 131 WAQMLLRMYTRWGEQQGYKVNLTELSEGDEAGIKSATLEIEGCYAFGYLKGEKGTHRLVR 190 Query: 188 VPATEASGRVHTSAATVAVLPEAAEID--VDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A V V+P E D VDIP +D+ I T R+ G GGQ+VN ++AVR Sbjct: 191 ISPFNANGKRQTSFAGVEVMPMLEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTGI V + E+SQ QN+ +A+ +L+A+L + +++ A E + R + Sbjct: 251 IVHVPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQEIAEIRGDMVE-AAWGN 309 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y F + + D R N+ + V+ G +D I L Sbjct: 310 QIRNYVFHPYQMVKDLRTNVETTDVTGVMDGNLDSFIEAYLRYD 353 >gi|328948955|ref|YP_004366292.1| hypothetical protein Tresu_2126 [Treponema succinifaciens DSM 2489] gi|328449279|gb|AEB14995.1| hypothetical protein Tresu_2126 [Treponema succinifaciens DSM 2489] Length = 381 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 122/346 (35%), Positives = 179/346 (51%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + D+ + AE E + D K T+ I + +I + Q DL + Sbjct: 28 DVDDINKKIAEKEALTTAPGFWDDNAKATKIMNDIKLLKGRIEPWQDLVQRVDDLEALYE 87 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G +D I + + + + + L L D D C L + AG GG+EA Sbjct: 88 LGLEENDKSIESELKEQYEKAKADYEH----QSILNLLSDEVDKNDCFLSVHAGAGGTEA 143 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY+R+A +KVEVLS + +GG K I ISG V+ K E+GVHR+ Sbjct: 144 CDWTFMLSRMYQRWAERHGYKVEVLS-QEEAEGGLKSINMKISGPYVYGYTKGEAGVHRL 202 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS A+V V P I+V+I +D+R+DT R+ G GGQHVN T+SAV Sbjct: 203 VRISPFDANARRHTSFASVYVFPVLDDSIEVNIDPKDLRVDTYRSGGKGGQHVNKTESAV 262 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 R THIPTGI+V SE+SQ NR AM +L++RLY+ ++ E S A K I G Sbjct: 263 RFTHIPTGIVVACDSERSQLMNRASAMSILKSRLYEYYKEEREKENSKFAGEKKDISFG- 321 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR ++ ++ V+ G ID ++ L+A Sbjct: 322 --SQIRSYVFQPYTMVKDHRTKYSVGNIQGVMDGDIDGFLDEFLSA 365 >gi|27467454|ref|NP_764091.1| peptide chain release factor RF-2 [Staphylococcus epidermidis ATCC 12228] gi|251810188|ref|ZP_04824661.1| peptide chain release factor 2 [Staphylococcus epidermidis BCM-HMP0060] gi|293368216|ref|ZP_06614845.1| peptide chain release factor RF2 [Staphylococcus epidermidis M23864:W2(grey)] gi|27314997|gb|AAO04133.1|AE016745_232 peptide chain release factor RF-2 [Staphylococcus epidermidis ATCC 12228] gi|251806240|gb|EES58897.1| peptide chain release factor 2 [Staphylococcus epidermidis BCM-HMP0060] gi|291317639|gb|EFE58056.1| peptide chain release factor RF2 [Staphylococcus epidermidis M23864:W2(grey)] Length = 332 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/334 (31%), Positives = 166/334 (49%), Gaps = 17/334 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + A+ I++ + ++ + + +L Sbjct: 1 MTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQEEYDEDMKIELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ + LL D + ILE+ G GG+E+ +V L RMY+RY Sbjct: 61 EEVQQFEEQIDQ-----YELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 CEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 SFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 I DHR N K++ V+ G I I L Sbjct: 293 SMIKDHRTNEETGKVDAVMDGEIGPFIEAYLRKE 326 >gi|325849490|ref|ZP_08170771.1| peptide chain release factor 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325480110|gb|EGC83185.1| peptide chain release factor 2 [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 369 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 109/341 (31%), Positives = 167/341 (48%), Gaps = 9/341 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L IE + D K E A +S + K+E +D +I Sbjct: 28 DNLFVEIKNIEKETLKENFWDDSQKAQEIMADLSDKKDDYKTFINLKEELKDQSDLIDII 87 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +E D ++ +E+ + D + + I AG GG EA + Sbjct: 88 EETNEELDSLVDVENSLNMLKKEISS-FKIKTELDGEYDRNNAYMVIHAGAGGLEATDWA 146 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+ R +K ++ ++ + GG K I G + +K E GVHR+ R+ Sbjct: 147 EMLMRMYTRFFERRNFKFDITDLNNEEAGGIKSATIHIKGSFAYGYLKGERGVHRLVRIS 206 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++S R HTS A++ + PE ++ V+I +D+RIDT RASG+GGQHVN TDSAVRITH Sbjct: 207 PFDSSKRRHTSFASIDIFPELNDDMSVEIDPKDLRIDTYRASGAGGQHVNKTDSAVRITH 266 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 IPTG++ + +E+SQ QN+ AMK+L A+L ++ + + + QI G + Sbjct: 267 IPTGVIASSQAERSQTQNKETAMKLLLAKLTQIKEEEHREKIEDIQGNYTQIAWG---SQ 323 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y F + DHR N + +E V+ G ID I+ L Sbjct: 324 IRSYVFHPYTLVKDHRTNFEVGNVESVMDGDIDGFIDAYLA 364 >gi|312115773|ref|YP_004013369.1| peptide chain release factor 2 [Rhodomicrobium vannielii ATCC 17100] gi|311220902|gb|ADP72270.1| Peptide chain release factor 2 [Rhodomicrobium vannielii ATCC 17100] Length = 376 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 163/343 (47%), Gaps = 10/343 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K R A + + + D + + + + ++ Y Q D +I Sbjct: 26 DKAKIRLANLNEIVEDPTLWDNPQRAQKLLRERQHLDTALTAYSQLAARLDDAVGLIELG 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +S+ + + E + + L D LE+ AG GG+E+ + Sbjct: 86 EEESDEEVVKEAEASLAVLQTEV--QKREVEALLSGEADGNDTFLEVHAGAGGTESQDWT 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +KVE++ S+ ++ G K + G F +K ESGVHR+ R+ Sbjct: 144 EMLLRMYMRWAEEQGYKVELIESAAGEEAGLKSATIQVKGSNAFGWLKTESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V P + + D RIDT RASG+GGQHVNTTDSAVRITH Sbjct: 204 PYDSNARRHTSFASVWVYPVVDDTIDIAVNESDCRIDTYRASGAGGQHVNTTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSER 305 +PTGI+V E+SQH+NR A +L+ARLY+ E K+ + +A K IG G + Sbjct: 264 VPTGIVVQCQMERSQHKNRATAWNMLKARLYEQELKKREDAAHAAAASKTDIGWG---HQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + + D R + VL G + I L Sbjct: 321 IRSYVLQPYQMVKDLRTGIVNTNPPAVLDGDLTAFIEAALAQR 363 >gi|225375950|ref|ZP_03753171.1| hypothetical protein ROSEINA2194_01587 [Roseburia inulinivorans DSM 16841] gi|225212203|gb|EEG94557.1| hypothetical protein ROSEINA2194_01587 [Roseburia inulinivorans DSM 16841] Length = 338 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 103/332 (31%), Positives = 174/332 (52%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + ++ ++ + + + L + + N S I ++ Sbjct: 1 MEDGDFWNDPVVSQNKMKTLKSMKDDVATYEKLATQFDDIETLIEMGYEENDASLIPEIE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ + + I L D + IL + AG GG+E+ + LFRMY ++ Sbjct: 61 EMLNEFVTTF-----DNIRIKTLLSGEYDGDNAILSLHAGAGGTESCDWAQMLFRMYSKW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +++ VL S D D+ G K I I+G + +K E GVHR+ R+ A+G+ T Sbjct: 116 ADSRGYELVVLDSLDGDEAGIKSITFQINGENAYGYLKSEKGVHRLVRISPFNAAGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+P+ E D++I +D+RIDT R+SG+GGQH+N T SA+RITH+PTGI+V Sbjct: 176 SFVSCDVMPDIEEDLDIEINEDDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQHQN+ +AM++L+A+LY ++ + A + + R +IG G+ +IR+Y Sbjct: 236 NERSQHQNKDKAMQMLKAKLYLLKEQENAEKAAGIRGEVTEIGWGN---QIRSYVMQPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR + ++ V+ G ID IN L Sbjct: 293 MVKDHRTGVETGNVDSVMDGKIDLFINGYLKW 324 >gi|270307933|ref|YP_003329991.1| peptide chain release factor 2 [Dehalococcoides sp. VS] gi|270153825|gb|ACZ61663.1| peptide chain release factor 2 [Dehalococcoides sp. VS] Length = 357 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 171/343 (49%), Gaps = 8/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E + ++ ++ ++ DL + Sbjct: 15 DVSAKELEITELENASASPDFWQDQQNAQRVMKKLAANKRTSELWRGLERRVNDLTELAV 74 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + + E+ + E+ LE L D+++ +L + AG GG E+ Sbjct: 75 LSYEDPSLSNEIEHEISGLTAELNSLEVG----LAFSGQYDNRNALLTVHAGAGGVESQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RM+ R+A + + +E+L S ++ G K I G + +K E GVHR+ R Sbjct: 131 WAGMLLRMFMRWAEKKGFGMEILDQSPGEEAGVKSATLQIDGEYAYGFLKSEHGVHRLIR 190 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A HTS A V ++PEA + D+DI EDI+I+ R+SG GGQ+V +AVRI Sbjct: 191 LSPFDADHARHTSFALVEIMPEAEDSVDIDIKPEDIKIEMFRSSGPGGQNVQKVSTAVRI 250 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+GI+V + +E+SQHQNR AM++L ++L VE + A ER+ + +I S + + Sbjct: 251 THIPSGIVVASQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKLKGERI-SAEWGNQ 309 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + DHR + + E VL+G +D IN L + Sbjct: 310 IRSYVLHPYKMVKDHRTDYEVGNAETVLEGELDGFINAYLRQN 352 >gi|325292702|ref|YP_004278566.1| peptide chain release factor 2 [Agrobacterium sp. H13-3] gi|325060555|gb|ADY64246.1| peptide chain release factor 2 [Agrobacterium sp. H13-3] Length = 342 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 109/336 (32%), Positives = 163/336 (48%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + I+ + +Q+ ++ +L + D ++ Sbjct: 2 NNKAEDPTLWNDATEAQKLMRERQQLDDSINGVKALEQQLKDNVELIELGEMEGDDEIVK 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D + N + D LE+ +G GG+E+ + L RMY Sbjct: 62 DAEDALKALRSEA-----NRRQVEAMLSGEADSNDTYLEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A +KVEVL D ++ G K + G F +K ESGVHR+ R+ +++ R Sbjct: 117 TRWADREGFKVEVLEVHDGEEAGIKSATILVKGHNAFGWLKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-M 254 HTS ++V V P I +DI D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI + Sbjct: 177 RHTSFSSVWVYPVVDDSIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIAV 236 Query: 255 VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRARLY+VE ++ + +A K IG G +IR+Y Sbjct: 237 ACQQERSQHKNRAKAWDMLRARLYEVELQKREDAANAQAASKTDIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + I D R + VL G ++ + L Sbjct: 294 PYQLIKDLRTGVESTAPGNVLDGDLNQFMEAALAHR 329 >gi|66044558|ref|YP_234399.1| peptide chain release factor 2 [Pseudomonas syringae pv. syringae B728a] gi|63255265|gb|AAY36361.1| Peptide chain release factor 2 [Pseudomonas syringae pv. syringae B728a] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 106/334 (31%), Positives = 166/334 (49%), Gaps = 15/334 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + +L E + ++ I+ + + +DL + + + + Sbjct: 2 NRELEDPNVWNNPAYAQELGRERSLLAQIVETLDEMSSGLADAKDLLLMSAEEEDQAAVD 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+A E + + + + D + L+I+AG+GG+EA + L RMY Sbjct: 62 DVAAEVERLRESLEK-----LEFRRMFSGDMDPNNAYLDIQAGSGGTEAQDWANILLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A R + ++ S + G K I G F ++ E GVHR+ R ++ R Sbjct: 117 LRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNR 176 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS + V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V Sbjct: 177 RHTSFSAVFVSPEIDDNIEIDINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFS 312 +E+SQH N+ AMK+LRARLY+ E ++ + + K IG G +IR+Y Sbjct: 237 SCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALEDTKSDIGWG---HQIRSYVLD 293 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R N+ + VL G ID+ + L Sbjct: 294 ASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 327 >gi|325571387|ref|ZP_08146887.1| peptide chain release factor RF2 [Enterococcus casseliflavus ATCC 12755] gi|325155863|gb|EGC68059.1| peptide chain release factor RF2 [Enterococcus casseliflavus ATCC 12755] Length = 329 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 103/328 (31%), Positives = 173/328 (52%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D K + A + ++Q +E ++L ++ +++ A+++ Sbjct: 1 MADPTFWDDSEKAQQVINANNANKETYDQFNQLAEELEELEVMLEMIQEEADPEMEAELD 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + +L + D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 ARIGKLNEKM--ASYELSMLLDEPYDRNNAIIELHPGAGGTESQDWGSMLLRMYTRFCEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + + G + +K E GVHR R+ +++ R HTS Sbjct: 119 HGYQVETLDYQAGDEAGIKSVTLLVKGHNAYGYLKSEKGVHRFVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE IDV+I +D++IDT RASG+GGQH+N T+SAVRITHIP G +V + +++ Sbjct: 179 SVDVMPELDGAIDVEINSDDLKIDTYRASGAGGQHINKTESAVRITHIPKGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G +IR+Y F + Sbjct: 239 SQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQLEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNFETGNVQAVMDGDLDGFIDAYLK 323 >gi|326771885|ref|ZP_08231170.1| peptide chain release factor 2 [Actinomyces viscosus C505] gi|326638018|gb|EGE38919.1| peptide chain release factor 2 [Actinomyces viscosus C505] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 6/349 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R AE+ + S D +A+S + + + + +DL ++ Sbjct: 26 EALRARIAELSEQASAPDLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + ++ + +++ L D + ++ IR+G GG +AA F Sbjct: 86 GEEEGEDAAEILAEAEMDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + V+VL++S ++ G K + + + + E G HR+ R+ Sbjct: 146 AEMLLRMYTRWAERHDYPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P + +DIP DIRID R+SG GGQ VNTTDSAVRIT Sbjct: 206 SPFDNQGRRQTSFAAVEVIPLIESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRIT 265 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTG++V+ EKSQ QNR AM+VL++RL ++++ ++ S +++ Sbjct: 266 HLPTGLVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQQEEDAKKKELAGDVKAS--WGDQM 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+Y + + + D R N + + V G ID I+ + + + Sbjct: 324 RSYVLNPYQMVKDLRTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQETAE 372 >gi|258405989|ref|YP_003198731.1| hypothetical protein Dret_1869 [Desulfohalobium retbaense DSM 5692] gi|257798216|gb|ACV69153.1| hypothetical protein Dret_1869 [Desulfohalobium retbaense DSM 5692] Length = 371 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 113/339 (33%), Positives = 176/339 (51%), Gaps = 16/339 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +R IE +++ + +LT E + ++ I ++ Q+ + + Sbjct: 32 DRLKTIEEELAKPEAWQNPEELTPILREKSRLTEEIESWEALRDLHEDLQEWLEMADEDQ 91 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ L++ + + + LL +D + ILEI G GG+EA + Sbjct: 92 GQEVLQALSETNANLAAQLNK-----VEMELLLSKPEDKGNAILEIHPGAGGTEAQDWAE 146 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ R +KV+ L S ++ G K + I G + ++ E G+HR+ R+ Sbjct: 147 MLLRMYLRWCERRGFKVQELDSLPGEEAGIKSVTLQIQGTFAYGLLQAEKGIHRLIRISP 206 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 + SGR HTS A+V V PE A +I++D+ EDIR+D R+SG GGQ+VN T SA+RITH Sbjct: 207 FDTSGRRHTSFASVDVYPEAADDIEIDVNDEDIRVDVFRSSGPGGQNVNKTSSAIRITHF 266 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 P+GI+V +EKSQ +N+ AMK+L++RLYD ERK+ ++ A K I G +I Sbjct: 267 PSGIVVQCQNEKSQRRNKETAMKILKSRLYDQERKKREADKQAEYASKEAIAWG---SQI 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 RTY R + DHR N ++ VL G ID + L Sbjct: 324 RTYTLQPYRLVKDHRTNTEAGDVDKVLDGDIDVFLRSYL 362 >gi|225025532|ref|ZP_03714724.1| hypothetical protein EIKCOROL_02432 [Eikenella corrodens ATCC 23834] gi|224941678|gb|EEG22887.1| hypothetical protein EIKCOROL_02432 [Eikenella corrodens ATCC 23834] Length = 367 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 168/344 (48%), Gaps = 15/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R E+ + + ++ +E + I+ + + + L + Sbjct: 30 DGKKDRLEEVVGLSEDPELWNDPKRAQEIGKERKVLEGIVLTLDNIAGGIDDNRLLIDMA 89 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ + + + D +C ++I AG GG+EA Sbjct: 90 LEEGDEDSFAAIEEDVAELEKQMAE-----LEFKRMFNQPADVNNCFIDITAGAGGTEAE 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + G L RMY RY + +KVE++ D + G + G + ++ E+GVHR+ Sbjct: 145 DWAGMLLRMYVRYGERKGFKVEIMEQDDGEIAGINRATIRLEGEYAYGLLRTETGVHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ + HTS A+V V PE +V+I D+R DT RASG+GGQH+N TDSAVR Sbjct: 205 RHSPFDSNNKRHTSFASVFVYPEVDDSFEVEINPADVRTDTFRASGAGGQHINKTDSAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +THIPTGI+V + + +SQH NR ++LRA+L+++E ++ E+ A K +G G Sbjct: 265 MTHIPTGIVVQSQNSRSQHDNRRVCEEMLRAKLFELEMRKRNEEKQALEEGKSDVGWG-- 322 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +DD I L Sbjct: 323 -SQIRSYVLDSSRIKDLRTSHETGNTKAVLDGDLDDFIEASLKQ 365 >gi|212716462|ref|ZP_03324590.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM 16992] gi|212660715|gb|EEB21290.1| hypothetical protein BIFCAT_01386 [Bifidobacterium catenulatum DSM 16992] Length = 376 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/355 (29%), Positives = 174/355 (49%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L + ++E++ +E D + + +S + S++ Q D+ T+ Sbjct: 25 DVDRLTAQAKDLEVQAAEPGLWDDPENAQKVTSKLSAVQSQLKRLSSASQRIDDVETLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D++ A+ EV +I+ ++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGQEEDDADTLAEARSEVESIQNDLADMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + RM E G HR+ Sbjct: 141 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +D+P +IR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDVPDSEIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G ID I + + + E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDAFIEAGIRWRHEQRRKAEEE 373 >gi|297171258|gb|ADI22265.1| protein chain release factor B [uncultured Gemmatimonadales bacterium HF0200_36I24] gi|297171357|gb|ADI22361.1| protein chain release factor B [uncultured nuHF2 cluster bacterium HF0500_02A10] Length = 334 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 169/331 (51%), Gaps = 14/331 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQ 80 M+ + D K +E A + + + + + + +L + + +H D ++ Sbjct: 1 MATAGFWDNQDKASEVIAESNRLKNWVKPWHDLNTKVSELTEIRDLLEHEDDEDLTHELI 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 EV IE I +LE + + DD + IL + G GG E+ + L RMY R+A Sbjct: 61 SEVDKIEGPIEDLEL----RTMLQGPDDHRGAILTVHPGAGGLESQDWAEMLTRMYSRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + + VL D+ G K + G + +K E G+HR+ R+ +A R HTS Sbjct: 117 ENHGYDLNVLDMQPGDEAGIKSATLEVVGGHAYGYLKAEKGIHRLVRISPFDAQSRRHTS 176 Query: 201 AATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A+V + P EI+++I D+R+DT RASG+GGQHVN TDSA+RITHIPTGI V Sbjct: 177 FASVFIYPLVDDEIEIEIAESDLRVDTFRASGAGGQHVNKTDSAIRITHIPTGIAVSCQQ 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-R 315 E+SQH NR AMK+L+A LY+ + E+ A K IG G+ +IR+Y F Sbjct: 237 ERSQHMNRATAMKMLQASLYERALEEKEQEKEAIEATKTDIGWGN---QIRSYVFQPYTM 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR +L + + V+ G +D I L Sbjct: 294 VNDHRTDLKISDVNKVMDGNLDPFIEAYLKQ 324 >gi|149038509|gb|EDL92839.1| rCG41113 [Rattus norvegicus] Length = 384 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 145/315 (46%), Positives = 204/315 (64%), Gaps = 5/315 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + + + ++K++E +D +++ D N D ++ LA+ E+ +KEI EL++ I LL+P Sbjct: 67 QLAAAARLLNEKERELRDTESLLHDENED--LKKLAESEIALCQKEIAELKHRIISLLVP 124 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 125 SEDMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 184 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI + I +D+R Sbjct: 185 SASIGGPEAYRHMKFEGGVHRVQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLR 244 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +NR AMK LRARLY + Sbjct: 245 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRL 304 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + +R + RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +DD+I Sbjct: 305 EEETAKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDCLLDDLI 364 Query: 341 NPLLTAHQAKMIGSA 355 L + + Sbjct: 365 QSLKDYSDYESLVEM 379 >gi|328870409|gb|EGG18783.1| peptide chain release factor 1 [Dictyostelium fasciculatum] Length = 530 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 152/346 (43%), Positives = 219/346 (63%), Gaps = 7/346 (2%) Query: 13 KNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + +F ++ + K+++E + ++ + K QE ++L ++ + Sbjct: 179 ETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMVSEVK- 237 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D E ++L ++ + +++++ E + LLP D DD+ + I+EIRAGTGGSEA LF + Sbjct: 238 DKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQLFALE 297 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MYE YA WK EVL D G ++ A+ISGRGVF +K ESGVHRVQR+ Sbjct: 298 MLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVHRVQRI 357 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE GRVHTS TVA+LPE E+D+ I ++RID R+SG+GGQ VNTTDSAVRITH Sbjct: 358 PETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSAVRITH 417 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG +V E+SQ NR +AMK+LRARLY+ ER R+ NERS++R QIG RSE+IR Sbjct: 418 LPTGTVVAMQDERSQLMNRAKAMKILRARLYEAERSRLHNERSSHRSSQIGDASRSEKIR 477 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 TYNF Q R+TDHR+N++ +E V+ G ++D+I ++ Q K + Sbjct: 478 TYNFPQDRVTDHRVNISTNNIESVMAGESLNDLIEEIILQLQTKDL 523 >gi|329116145|ref|ZP_08244862.1| peptide chain release factor 2 [Streptococcus parauberis NCFD 2020] gi|326906550|gb|EGE53464.1| peptide chain release factor 2 [Streptococcus parauberis NCFD 2020] Length = 327 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 182/330 (55%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MSE + I + ++ + K Y + ++ + + D +++ + Sbjct: 1 MSEPDFWNDNIAAQKTSQELNELKVKFDTYHDMQNLSEETELYLEMLDEDDSLQEELEAS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +++ ++ + LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 61 ----LEKLDQILSSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAEEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G+ID I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGFIDGFIDAYLKWR 323 >gi|296199479|ref|XP_002747187.1| PREDICTED: peptide chain release factor 1-like, mitochondrial [Callithrix jacchus] Length = 382 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 142/314 (45%), Positives = 208/314 (66%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELVAVVKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY+RYAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEMFDMYQRYAAFKRWHFETLEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AMK LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMKKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRI+ +L+ L+ +QG +D+++ Sbjct: 301 EEETNKRDNARKIQIGSKGRSEKIRTYNFPQNRVTDHRISKSLHDLQTFMQGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|126739118|ref|ZP_01754812.1| peptide chain release factor 2 [Roseobacter sp. SK209-2-6] gi|126719735|gb|EBA16443.1| peptide chain release factor 2 [Roseobacter sp. SK209-2-6] Length = 374 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 112/333 (33%), Positives = 170/333 (51%), Gaps = 5/333 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ + Y KQ+ D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDPEAAQKLMRERQTLVDAMDTYKGIKQDLADNIELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +A E + + E E+ LL + + LEI +G GG+E+ + L R Sbjct: 91 EEVVADAEEALKALQQKAAEKELEALLDGEADSN--DTFLEINSGAGGTESCDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S + ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSETAGEEAGIKSAAYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHNPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQIELDKRSALVNEVHESA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R + + VL G +D + L Sbjct: 328 YQMVKDLRTSHETSDTKGVLDGDLDGFMAATLA 360 >gi|37527422|ref|NP_930766.1| peptide chain release factor 2 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786857|emb|CAE15922.1| Peptide chain release factor 2 (RF-2) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 310 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 170/316 (53%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +++ I+ I +Q ++ Q L + + + + + +++ E Sbjct: 1 MGKERSSLEEIVETIDQLEQGLEDVQGLLELAVEADDEETFNEAVVE-----LEQLEEKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D C L+++AG+GG+EA + L RMY R+A + +K E++ SD Sbjct: 56 GQLEFRRMFSGEYDSADCYLDLQAGSGGTEAQDWASMLMRMYLRWAESKGFKTEIIEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 + G K I G + ++ E+GVHR+ R ++ GR HTS ++ + PE +I Sbjct: 116 GEVAGLKSATIKIMGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D++I D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK Sbjct: 176 DIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+LY++E ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLYELEMQKKNANKQEMEENKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQS 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGDLDKFIEASLKA 308 >gi|76798117|ref|ZP_00780371.1| peptide chain release factor 2 [Streptococcus agalactiae 18RS21] gi|77405443|ref|ZP_00782536.1| peptide chain release factor 2 [Streptococcus agalactiae H36B] gi|77408934|ref|ZP_00785658.1| peptide chain release factor 2 [Streptococcus agalactiae COH1] gi|77411593|ref|ZP_00787935.1| peptide chain release factor 2 [Streptococcus agalactiae CJB111] gi|209559087|ref|YP_002285559.1| peptide chain release factor 2 [Streptococcus pyogenes NZ131] gi|76586525|gb|EAO63029.1| peptide chain release factor 2 [Streptococcus agalactiae 18RS21] gi|77162378|gb|EAO73347.1| peptide chain release factor 2 [Streptococcus agalactiae CJB111] gi|77172476|gb|EAO75621.1| peptide chain release factor 2 [Streptococcus agalactiae COH1] gi|77175936|gb|EAO78712.1| peptide chain release factor 2 [Streptococcus agalactiae H36B] gi|209540288|gb|ACI60864.1| Peptide chain release factor 2 [Streptococcus pyogenes NZ131] Length = 326 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 181/333 (54%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K + ++ + ++ + D +++ + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEEN 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ + ++ LL + D + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS A Sbjct: 117 NGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V++ +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V+S+ ++ Sbjct: 177 SVEVMPELDDTIEVEVRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N L +++ V+ G I+ I+ L Sbjct: 294 DHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 326 >gi|313889933|ref|ZP_07823573.1| peptide chain release factor 2 [Streptococcus pseudoporcinus SPIN 20026] gi|313121699|gb|EFR44798.1| peptide chain release factor 2 [Streptococcus pseudoporcinus SPIN 20026] Length = 327 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/330 (31%), Positives = 178/330 (53%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K + + ++ + D ++ E Sbjct: 1 MTEPDFWNDTIAAQKTSQELNELKVKFDTFHNMENLSEETELYMEMLEEDESVK----GE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ ++ LL + D + ILEI G+GG+EA + LFRMY R+ Sbjct: 57 LEESLLKLDQILAAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWADMLFRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLSFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V+S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+ + A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQDKKAEEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + +++ V+ G ID I+ L Sbjct: 294 DHRTNFEVAQVDKVMDGDIDGFIDAYLKWR 323 >gi|152965225|ref|YP_001361009.1| peptide chain release factor 1 [Kineococcus radiotolerans SRS30216] gi|189039977|sp|A6W7F6|RF1_KINRD RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|151359742|gb|ABS02745.1| peptide chain release factor 1 [Kineococcus radiotolerans SRS30216] Length = 355 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 205/354 (57%), Gaps = 16/354 (4%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L + AE+E R+++ L YA + + + Sbjct: 8 LLDEHAELERRLADPAVHADAALARTLGRRYAELGAV-------VVAHAAWRAAADDAEA 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E+ A+++ E ++ LLLP+D DD + ILEI+AG GG E+ALF Sbjct: 61 ARELAAEDAAFAAELPALQRAAEEAGEKLRRLLLPRDPDDSRDVILEIKAGEGGEESALF 120 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV-----FSRMKFESGVH 183 GDL RMY RYA W EVL ++ +D GGYK++ + RG + R+K+E GVH Sbjct: 121 AGDLLRMYLRYAERHGWVTEVLDANPSDLGGYKDVSVAVKTRGAAAEGVWHRLKYEGGVH 180 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GRVHTSA V V+PEA E++V + D+R+D R+SG GGQ VNTTDSA Sbjct: 181 RVQRVPVTESQGRVHTSAVGVLVVPEAEEVEVAVDPNDLRVDVFRSSGPGGQSVNTTDSA 240 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTG++ +EKSQ QNR +AM++LRARL+ + ++ + SA R+ Q+ + DR Sbjct: 241 VRITHLPTGVVATCQNEKSQLQNREQAMRILRARLHALAQEAADAQASAARRSQVRTVDR 300 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 SER+RTYN+ + RI DHR Y L+ VL G +D +I + A +A + + S Sbjct: 301 SERVRTYNYGENRIADHRTGFKAYNLDTVLDGDLDPVIQSAIDADEAAQLAATS 354 >gi|302872499|ref|YP_003841135.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis OB47] gi|302575358|gb|ADL43149.1| hypothetical protein COB47_1880 [Caldicellulosiruptor obsidiansis OB47] Length = 372 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 117/353 (33%), Positives = 178/353 (50%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ +E S + I + KI + + + +DL Sbjct: 21 MRVSLDIDRLQSELKWLESETSNPDFWQDLENSQKVLQKIKRLKDKIERFQKLCSQWEDL 80 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + ++E ++ E + + +L D + IL I AG GG Sbjct: 81 KVLTELSIEEGNHEMAEELEKELLDLEKKI--EDFKIEVLLNGPYDKNNAILSIHAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY R+AA + +KVE L ++ G K + I G + +K E GV Sbjct: 139 TEAQDWAEMLLRMYTRWAAKKGYKVETLDILPGEEAGIKNVTIRIVGENAYGYLKAEKGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+GR HTS A V VLPE + D++I ED+ IDT RASG+GGQHVN T+ Sbjct: 199 HRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEIKEEDLEIDTFRASGAGGQHVNKTE 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+L +++ K + + Q IG Sbjct: 259 SAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAKLLELKEKERREKIQKLKGEQTDIG 318 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y F + DHR + +E V+ G ID IN L + + Sbjct: 319 WGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMDGEIDVFINAYLKKFRNE 368 >gi|27262208|gb|AAN87385.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis] gi|111074980|gb|ABH04839.1| bacterial peptide chain release factor 2 [Heliobacillus mobilis] Length = 341 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 119/338 (35%), Positives = 189/338 (55%), Gaps = 6/338 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + R AE+EL +++ + + + ++ + K+ + Q+ +DL + + + Sbjct: 4 KEERIAELELMITDPTFWEDQEQAQKTMQELTGLKDKVKSFFDLYQKWEDLGVL-RELGA 62 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E D+ Q I+ EL+ LLL D + ++ + AG GG+EA + Sbjct: 63 EEEDPDILQEIEEGIQTIQSELDRWHLQLLLNGPYDR-NNALVTLHAGAGGTEAMDWNEM 121 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ + +KV++L S D+ G K + SG + +K E GVHR+ R+ Sbjct: 122 LMRMYIRWGEKKGYKVDILDSLAGDEAGMKSATLSFSGENAYGYLKGEMGVHRLVRISPF 181 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +ASGR HTS A+V VLPE + +ID+ I ED+++DT RASG+GGQHVN T+SAVRITHIP Sbjct: 182 DASGRRHTSFASVEVLPEVSDDIDIQINSEDLKVDTFRASGAGGQHVNKTESAVRITHIP 241 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+V SE+SQ QNR AM++L+A+L++ +R+ A+E + K +IR+Y Sbjct: 242 TGIVVACQSERSQIQNRATAMRMLQAKLFERQRQEQADEVNRL-KGDQQDIAFGSQIRSY 300 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 F + DHR N + + V+ G IDD ++ + Sbjct: 301 VFHPYNLVKDHRTNCEVGAVYNVMDGEIDDFVSAYMIW 338 >gi|289706413|ref|ZP_06502771.1| peptide chain release factor 2 [Micrococcus luteus SK58] gi|289556908|gb|EFD50241.1| peptide chain release factor 2 [Micrococcus luteus SK58] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 107/357 (29%), Positives = 180/357 (50%), Gaps = 16/357 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + +K AE+E + S D + + + +S + + + +DL T+ Sbjct: 25 DLDRIKADIAELEQQASAPDLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + + A E+ +I K + ELE D + ++ IRAG GG +A Sbjct: 85 LAAEEDEPSLLEDANQELTSIRKALEELEVVTL----LSGEYDQRDAVVTIRAGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R W +V+ +S ++ G K + ++ F + E+G HR+ Sbjct: 141 ADFAETLMRMYLRWAEQRGWSTKVMDTSYAEEAGLKSVTFEVNAPFAFGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++ ++IP +I++D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLIESDDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 R+TH+PTGI+V+ +EKSQ QNR A++VL++RL + E A +K G Sbjct: 261 RMTHLPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLLR----KAEEDAKKKEMAGDVKAS 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + + D R V G+IDD ++ + +A+ + +A E Sbjct: 317 WGDQMRSYVLNPYQMVKDLRTGHEEGNPSSVFDGHIDDFVDAGIRW-RAEQVKAAQE 372 >gi|307128516|ref|YP_003880546.1| peptide chain release factor 1 [Candidatus Sulcia muelleri CARI] gi|306482978|gb|ADM89848.1| peptide chain release factor 1 [Candidatus Sulcia muelleri CARI] Length = 355 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 140/348 (40%), Positives = 209/348 (60%), Gaps = 5/348 (1%) Query: 1 MVFLSH---KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M+ + + K+I +K RF E+ + + + + Y I I+ Y+ K+ Sbjct: 1 MIKIDNFLLKKIESIKKRFYELYSLIIKPDIIHNNKNYIKIYKEYKNINKIINYYNNYKK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + ++L + DS+ L + + + + ++ ++ K+ ++E+R Sbjct: 61 KLKNLKEIENLIKLDSDKEFLELANIDKKSQILELKLILKKIQIYFENQNNHKNALMELR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +FV D+FRMY Y W E+L+ GYKEI+ I G+ V+ +K Sbjct: 121 AGTGGDEACIFVEDIFRMYTMYFKELCWNYEILNMQHGPIKGYKEIILEIQGKNVYGTLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQH 236 FESGVHRVQRVP TE+ GR+HTSA TVA+ P E + +++ L DI+ DT RASG+GGQH Sbjct: 181 FESGVHRVQRVPYTESQGRLHTSAITVAIFPEEDYKKKINLILSDIKRDTFRASGAGGQH 240 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+THIPTGI+ E+SQH+N +AMKVLRAR+Y E + + S RK Sbjct: 241 VNKTESAIRLTHIPTGIIAECQEERSQHKNYEKAMKVLRARIYQSELNQKKEKLSKERKD 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 I +GDRS +IRTYN+ QGR+TDHRIN ++Y L++ + G I+++I L Sbjct: 301 LISTGDRSAKIRTYNYPQGRVTDHRINKSIYNLDHFMNGKINEMITAL 348 >gi|291531340|emb|CBK96925.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium siraeum 70/3] Length = 370 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 110/342 (32%), Positives = 178/342 (52%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +LK A++E + ++ + + I + + Y++ ++ D+ T++ Sbjct: 26 DLDNLKTEIAKLEEQSAQPDFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + L +I+ LA L D + IL AG GG+EA Sbjct: 86 LAQEEDDESMLPEIQELAKHFRTEL--ESQKLATLLSGEFDHNNAILTFHAGAGGTEAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L+RMY +A KV VL D ++ G K + GR + +K E+GVHR+ R Sbjct: 144 WVEMLYRMYNHWAEQHGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V ++SGR HTS A+V V+PE E D++I ++I++D RASG+GGQ VN T SAVRI Sbjct: 204 VSPFDSSGRRHTSFASVEVMPEINEDIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+ +E+SQHQNR AM++L+++L +++ + ++ S + Q+ + Sbjct: 264 THIPTGIVCACQTERSQHQNREYAMRMLKSKLLEIKEREHLDKISDIKGEQL-QIAWGAQ 322 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR + + V+ G +D IN L A Sbjct: 323 IRSYVFMPYTMVKDHRTGYEMGNIGAVMDGDLDGFINAYLKA 364 >gi|15080204|gb|AAH11873.1| Mitochondrial translational release factor 1-like [Homo sapiens] gi|119568097|gb|EAW47712.1| mitochondrial translational release factor 1-like, isoform CRA_a [Homo sapiens] gi|119568101|gb|EAW47716.1| mitochondrial translational release factor 1-like, isoform CRA_a [Homo sapiens] gi|312151704|gb|ADQ32364.1| mitochondrial translational release factor 1-like [synthetic construct] Length = 380 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 145/314 (46%), Positives = 207/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 301 EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|332213665|ref|XP_003255945.1| PREDICTED: peptide chain release factor 1-like, mitochondrial isoform 1 [Nomascus leucogenys] Length = 380 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 207/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 301 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINRTLHDLETFMQGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|313113161|ref|ZP_07798787.1| peptide chain release factor 2 [Faecalibacterium cf. prausnitzii KLE1255] gi|310624500|gb|EFQ07829.1| peptide chain release factor 2 [Faecalibacterium cf. prausnitzii KLE1255] Length = 373 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 173/343 (50%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R E+E MS D + + + + K+S +++ + D T++ Sbjct: 27 IDASRKRVQELEHTMSRPGFYDDADLSKKVFDEVGDLKGKLSRFEKLQGLYDDAETMLEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + + E E + + D + IL AGTGG+EA + Sbjct: 87 LDEEYDPAMIPEAEESVNAVGKAVDEL--QLMTMLNGEYDHSNAILTFHAGTGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY ++A+ VEVL D D+ G K + G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYNKWASNHGMTVEVLDYQDGDEAGMKSASMMVKGANAYGLLKSENGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A++ V+PE I VDI EDI + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFASLEVMPELDNTIQVDISPEDIEMQVYRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTG++V +++SQ QNR AM++L+A+LY + +++ ++ + + +I G Sbjct: 265 HKPTGVVVSCQTQRSQFQNRDYAMEMLKAKLYQIAKQQHMDKIDDIKGVQNEIAWG---H 321 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N ++ V+ G +D I L A Sbjct: 322 QIRSYVFMPYTMVKDHRTNYETGNVDAVMDGDLDGFIFAYLKA 364 >gi|240168635|ref|ZP_04747294.1| peptide chain release factor 2 [Mycobacterium kansasii ATCC 12478] Length = 376 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 161/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ + ++E S+ D + + +S ++ +Q + DL + Sbjct: 28 DVDALRAKIDKLEHEASDPKLWDDQARAQRVTSELSHAQGELRRVEQLRSRLDDLPVLYE 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENE-INYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + E + E E L D++ ++ IR+G GG +AA Sbjct: 88 LAAEEEGEAAAEALAEADAELKALHAEIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 147 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 148 DWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 207 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 208 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 267 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS Sbjct: 268 LTHIPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLERKRLEERAELDAL-KGEGGS-SWGN 325 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 326 QMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 372 >gi|188997267|ref|YP_001931518.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1] gi|229576671|sp|B2V5M0|RF2_SULSY RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|188932334|gb|ACD66964.1| peptide chain release factor 2 [Sulfurihydrogenibium sp. YO3AOP1] Length = 369 Score = 214 bits (544), Expect = 2e-53, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 180/345 (52%), Gaps = 16/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L+ +++ M++ + +++ + + +I D+K D T++ Sbjct: 27 EKLEEEIKQLDDLMADPNFWNDTKKAQEISSRRNYLGEKLEEILTVDKKVNNLLDYITLL 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E+ + + E+ IEKEI LE + IL ++AG+GG EA Sbjct: 87 EMEE-DQELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNA----ILTVQAGSGGVEAC 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R ++VE++ +D G K I G + +K E GVHR+ Sbjct: 142 DWTEMLLRMYTRWAEKRGYQVELVDFQPDDVAGVKSATLIIKGPYAYGYLKGEQGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ R HTS + V+V+PE E V+I ED+RIDT RASG+GGQHVN TDSAVR Sbjct: 202 RISPFDANKRRHTSFSAVSVIPEIDEDIKVEINEEDLRIDTYRASGAGGQHVNKTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+V SE+SQ QN+L+A +L+A+LY +E ++ ++ K I G Sbjct: 262 ITHIPTGIVVACQSERSQLQNKLKATNMLKAKLYQLELEKRKEKQKELEGEKKDITWG-- 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + + D R +E V+ G IDD I L Sbjct: 320 -SQIRSYVFQPYQMVKDLRTGFETGNIEAVMDGEIDDFIESYLKW 363 >gi|325066934|ref|ZP_08125607.1| peptide chain release factor 2 [Actinomyces oris K20] Length = 373 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 102/351 (29%), Positives = 169/351 (48%), Gaps = 10/351 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R AE+ + S D +A+S + + + + +DL ++ Sbjct: 26 EALRARIAELSEQASAPDLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + +++ L D + ++ IR+G GG +AA F Sbjct: 86 GEEEGEDAAEILAEAETDLAAISKDLSDLEIRTLLSGEYDPRDAVITIRSGAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + V+VL++S ++ G K + + + + E G HR+ R+ Sbjct: 146 AEMLLRMYTRWAERHDYPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P + +DIP DIRID R+SG GGQ VNTTDSAVRIT Sbjct: 206 SPFDNQGRRQTSFAAVEVIPLIESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRIT 265 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSE 304 H+PTG++V+ EKSQ QNR AM+VL++RL ++++ E A +K G + Sbjct: 266 HLPTGLVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQQ----EEDAKKKELAGDVKASWGD 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + + + D R N + + V G ID I+ + + + Sbjct: 322 QMRSYVLNPYQMVKDLRTNFEVGNPDSVFDGDIDGFIDAGIRWRKQQETAE 372 >gi|296127692|ref|YP_003634944.1| hypothetical protein Bmur_2678 [Brachyspira murdochii DSM 12563] gi|296019508|gb|ADG72745.1| hypothetical protein Bmur_2678 [Brachyspira murdochii DSM 12563] Length = 367 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 167/346 (48%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R EI+ ++ + KL +E + I + + +L + Sbjct: 27 DSIYKRVKEIDEISAKDDFWNDNIKAQKLMKERMLLLDKIEPVENLIKNSNNIYELVEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++L + + L D K+ L + AG GG+E+ Sbjct: 87 IESNDIEMEKELEGECIELQRVFDE-----LETKNLFSGEFDSKNAYLTLNAGAGGTESC 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ + VE+ D+ G K+I + G + ++ E GVHR+ Sbjct: 142 DWASMLSRMYVRFCERHGFTVEITDELPGDEAGIKQISFYVQGLYAYGYLRSEIGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS V+V+P+ E +V+I D+R+DT RASG+GGQHVN T SA+R Sbjct: 202 RISPFDANAKRHTSFVAVSVMPDIDEDIEVEINPSDLRVDTYRASGAGGQHVNKTSSAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDR 302 ITHIPT I+V +E+SQH N+ AMK+L+A+LY +E+ ++ E+ K I G+ Sbjct: 262 ITHIPTNIVVQCQAERSQHNNKDMAMKMLKAKLYQLEKDKLDKEKQKIAGEKTDIAWGN- 320 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + + D R + V+ G ID+ I+ L Sbjct: 321 --QIRSYVFQPYQMVKDLRTGHETGNMNSVMDGNIDEFISAYLKQQ 364 >gi|167842463|gb|ACA03159.1| RF1 [Dictyostelium fasciculatum] Length = 515 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 152/346 (43%), Positives = 219/346 (63%), Gaps = 7/346 (2%) Query: 13 KNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + +F ++ + K+++E + ++ + K QE ++L ++ + Sbjct: 164 ETKFDGLQRLIESQSLPQSEIKKVSKELDELREQVNSWKVLLVKCQELRELEEMVSEVK- 222 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D E ++L ++ + +++++ E + LLP D DD+ + I+EIRAGTGGSEA LF + Sbjct: 223 DKEEKELMNQDLKEMVEQVKDSERALVMSLLPSDKDDEGNAIMEIRAGTGGSEAQLFALE 282 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MYE YA WK EVL D G ++ A+ISGRGVF +K ESGVHRVQR+ Sbjct: 283 MLGMYEGYAQTMGWKFEVLEIGWTDAVGNKACRDASASISGRGVFGFLKNESGVHRVQRI 342 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE GRVHTS TVA+LPE E+D+ I ++RID R+SG+GGQ VNTTDSAVRITH Sbjct: 343 PETETMGRVHTSTVTVAILPEPKEVDIKIRDSELRIDVYRSSGNGGQSVNTTDSAVRITH 402 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG +V E+SQ NR +AMK+LRARLY+ ER R+ NERS++R QIG RSE+IR Sbjct: 403 LPTGTVVAMQDERSQLMNRAKAMKILRARLYEAERSRLHNERSSHRSSQIGDASRSEKIR 462 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 TYNF Q R+TDHR+N++ +E V+ G ++D+I ++ Q K + Sbjct: 463 TYNFPQDRVTDHRVNISTNNIESVMAGESLNDLIEEIILQLQTKDL 508 >gi|148244437|ref|YP_001219131.1| peptide chain release factor RF-2 [Candidatus Vesicomyosocius okutanii HA] gi|146326264|dbj|BAF61407.1| peptide chain release factor RF-2 [Candidatus Vesicomyosocius okutanii HA] Length = 364 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 167/349 (47%), Gaps = 15/349 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 H + + R EI L M + + L E + + I + ++ Q+L Sbjct: 23 HLNLKKKQYRLEEILLEMEDPNIWENPNQAQSLGREKSKLISICQTFEQVNAILEDAQEL 82 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + N D+E + ++ + I +LE + + D S L+I++G+GG Sbjct: 83 LNLAQTEN-DTETANGIINDLDTAQSSIEKLE----FKRMFSGDLDANSAYLDIQSGSGG 137 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + + RMY R+ +K++++ S + G K G F ++ E G+ Sbjct: 138 TEAQDWAEMVLRMYLRWGEKHNFKIKLMEVSAGEVAGIKSATIHFKGEYAFGWLRTEIGI 197 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED-IRIDTMRASGSGGQHVNTTD 241 HR+ R A+G+ HTS +V V PE +RIDT RASG+GGQHVN T+ Sbjct: 198 HRLVRKSPFNANGKRHTSFCSVFVSPEIDSDIDIDISPSDLRIDTYRASGAGGQHVNKTE 257 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIG 298 SAVRITH+PT +V + +SQH N+ +A+K L+++LY +E ++ E+ K I Sbjct: 258 SAVRITHLPTNTVVQCQNGRSQHANKNQAIKQLQSKLYKLEMQKRNTEKQSLEQSKSDIS 317 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 G +IR+Y Q R+ D R + + +L+G +D + L + Sbjct: 318 WG---HQIRSYILDQSRVKDLRTGIESSNTQNILEGNLDQFMKASLKSR 363 >gi|282875665|ref|ZP_06284536.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135] gi|281295692|gb|EFA88215.1| peptide chain release factor 2 [Staphylococcus epidermidis SK135] gi|329723235|gb|EGG59765.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU144] gi|329736827|gb|EGG73092.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU028] gi|329737925|gb|EGG74149.1| peptide chain release factor 2 [Staphylococcus epidermidis VCU045] Length = 333 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 105/335 (31%), Positives = 166/335 (49%), Gaps = 17/335 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M++ + K + A+ I++ + ++ + + +L Sbjct: 1 MMTDPDFWNDQTKAQDIIDKNNALKSIVNGYYQLTNAVDDMSATRELLQEEYDEDMKIEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + E+ + LL D + ILE+ G GG+E+ +V L RMY+R Sbjct: 61 EEEVQQFEEQIDQ-----YELQLLLDGPHDANNAILELHPGAGGTESQDWVSMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEQNGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQEQEMAEIRGEQKDIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 I DHR N K++ V+ G I I L Sbjct: 293 YSMIKDHRTNEETGKVDAVMDGEIGPFIEAYLRKE 327 >gi|254454841|ref|ZP_05068278.1| peptide chain release factor 2 [Octadecabacter antarcticus 238] gi|198269247|gb|EDY93517.1| peptide chain release factor 2 [Octadecabacter antarcticus 238] Length = 375 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 114/335 (34%), Positives = 168/335 (50%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I+ Y+ +QE D +I + + Sbjct: 31 RLEEFNARVEDPTLWDDPDAAQKLMRDRQSLVDAIASYEAIRQELSDHVELIEMGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + E + E E+ L D LEI +G GG+EA + L R Sbjct: 91 AGVVTEAEDGLKVLAAKAAEKELEAL--LNGEADANDTFLEINSGAGGTEACDWAAMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAERKGYKVELQSESAGEEVGIKSASYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHAPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQIEMDKRSALVNEVHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D + L Sbjct: 328 YQMVKDLRTRHETSDTQGVLDGDLDAFMGATLAMD 362 >gi|149194096|ref|ZP_01871194.1| peptide chain release factor 2 [Caminibacter mediatlanticus TB-2] gi|149136049|gb|EDM24527.1| peptide chain release factor 2 [Caminibacter mediatlanticus TB-2] Length = 364 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 191/343 (55%), Gaps = 8/343 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R EI ++ + + + I+ K+ Y + K QD + Sbjct: 27 DELQKRLDEITQMENDPNFWNDPKNSAKIQKEKNAILRKLEKYKKAKNSLQDNKDMYELA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + EV KE+ ++ ++ ++ +DDK+ I+ I G GG+E+ + Sbjct: 87 TMEED--EETLNEVFNDVKELEKIIRDLEIEVMLSGENDDKNAIITIHPGAGGTESHDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA R WKV++L D+ G K+ + G + +K E+G+HR+ RV Sbjct: 145 SMLYRMYLRYAERRGWKVDILDYQAGDEAGIKDATILVKGENAYGYLKAENGIHRLVRVS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ GR HTS A+V V P +I+++I +DIRID RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSGGRRHTSFASVQVSPEIDDDIEIEIDEKDIRIDVYRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V ++SQH+N+ A K+L+++LY++E ++ E K ++G G +IR Sbjct: 265 IPTGIVVSCQQDRSQHKNKEMAFKMLKSKLYELELEKRKAEEEGKPKDEMGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +Y F ++ D+R N K++ +L G +D+II +L + Q+ Sbjct: 322 SYVLFPYQQVKDNRSNKAYSKVDDILDGDLDEIIEDVLISQQS 364 >gi|302338432|ref|YP_003803638.1| peptide chain release factor 2 [Spirochaeta smaragdinae DSM 11293] gi|301635617|gb|ADK81044.1| peptide chain release factor 2 [Spirochaeta smaragdinae DSM 11293] Length = 339 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 179/344 (52%), Gaps = 11/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + +E + + + + + ++ + +DL T+ Sbjct: 1 MAQEIKVLEAESGSPEFWEDRERAEKRLGELKRLHKRLDPWKDLLSSFEDLETLFELAAE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + + + ++ E+ + +N + + D + L I +G GG+EA + Sbjct: 61 EQD--ESQEHDIKRQLDEVGDTYRGLNLTEMFQGEFDGSNAFLTIHSGAGGTEACDWTAM 118 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A R++ V+ L + + GG K + I+G VF +K E GVHR+ R+ Sbjct: 119 LLRMYTRWAERREFSVQTLDLLEAE-GGVKSVTLQINGDFVFGYLKSEIGVHRLVRISPF 177 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++SGR HTS A+V + P +I+VDI E++RIDT RA G+GGQHVN TDSAVRITHI Sbjct: 178 DSSGRRHTSFASVYISPVIDDDIEVDIKPEELRIDTYRAQGAGGQHVNKTDSAVRITHIS 237 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSGDRSERIR 307 TGI+V +E+SQ++N+ A+K+LR+RLY+ +K E+ A K +I G+ +IR Sbjct: 238 TGIVVQCQNERSQYKNKAMALKILRSRLYEHYKKEQEKEQEKHAQEKKEISWGN---QIR 294 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F + DHR + ++ V+ G IDD I L Q + Sbjct: 295 SYVFQPYTMVKDHRTKHEVGNIQAVMDGEIDDFIIAFLNWMQTE 338 >gi|289432457|ref|YP_003462330.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT] gi|288946177|gb|ADC73874.1| hypothetical protein DehalGT_0507 [Dehalococcoides sp. GT] Length = 361 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 173/343 (50%), Gaps = 8/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E S + ++ ++ ++ DL + Sbjct: 20 DVSAKELEITELETASSNPDFWQDQQNAQKAMKKLAANKRTSELWRGLERRINDLTELAV 79 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + + E+ + E+ LE L D+++ +L + AG GG E+ Sbjct: 80 LSREDPSLSNEIEHEISGLTAELDSLEVG----LAFSGQYDNRNALLTVHAGAGGVESQD 135 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RM+ R+AA + + +E+L S ++ G K I G + +K E GVHR+ R Sbjct: 136 WAGMLLRMFMRWAAKKGFGMEILDQSLGEEAGIKSATLQIEGEYAYGFLKSEHGVHRLIR 195 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A HTS A V ++PEA + D+DI EDI+ID R+SG GGQ+V +AVR+ Sbjct: 196 LSPFDADHARHTSFALVEIMPEAEDSVDIDIKPEDIKIDMFRSSGPGGQNVQKVSTAVRV 255 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIP+GI+V + +E+SQHQNR AM++L ++L VE + A ER+ + +I S + + Sbjct: 256 THIPSGIVVASQTERSQHQNREIAMRILASKLLAVEIAKRAEERAKLKGERI-SAEWGSQ 314 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR+Y + DHR + + E VL+G +D I+ L + Sbjct: 315 IRSYVLHPYKMVKDHRTDYEVGNAEAVLEGELDGFISAYLRQN 357 >gi|226531101|ref|NP_001152654.1| peptide chain release factor 2 [Zea mays] gi|195658609|gb|ACG48772.1| peptide chain release factor 2 [Zea mays] gi|223950205|gb|ACN29186.1| unknown [Zea mays] Length = 449 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 96/341 (28%), Positives = 159/341 (46%), Gaps = 5/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + S+S D K +++ + K+ + + K + ++ T++ Sbjct: 101 LQQLEEDIASLENKSSDSSLWDDPSKAQGILVSLTEVKDKVKLLNDFKLQIEEAETIVKL 160 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D + ++ I AG GG++A + Sbjct: 161 TEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDW 220 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 221 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQ 280 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P + VDIP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 281 SPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLEISFTRAGGKGGQNVNKVETAVRM 340 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V S E+SQ N+++A+ L+A+L + ++ A+E R I + ++ Sbjct: 341 VHIPTGIAVRCSEERSQLANKIKALSRLKAKLLVIALEQRASEIKQIR-GDIVKAEWGQQ 399 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y F + + D R + V+ G +D I L Sbjct: 400 IRNYVFHPYKLVKDVRTGCETSDITGVMDGELDPFIRAYLK 440 >gi|315187113|gb|EFU20870.1| bacterial peptide chain release factor 2 (bRF-2) [Spirochaeta thermophila DSM 6578] Length = 364 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 177/350 (50%), Gaps = 10/350 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +K + + +E + E + + + + + QE +D+HT+ Sbjct: 16 SIKEQISRLEEETGRPDLWNDRKHAEEVLSRLRRLKVRYEGWASLVQEVEDIHTLYDLAA 75 Query: 71 SDSEI-RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +++ ++ + E+ E E+ L + D K L I AG GG EA + Sbjct: 76 EENDPSQEEEEEELRQQLAEAERKFRELRLRELLNEEYDQKDAYLTIHAGAGGMEACDWA 135 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+ + + +++ D+GG K + + G F +K E+GVHR+ R+ Sbjct: 136 SMLLRMYLRWLERKGFSTQIVDM-VEDEGGIKSVTVEVKGDYAFGYLKGEAGVHRLVRIS 194 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V V P + +VDI ED+RIDT R+ G+GGQHVN T+SAVRITH Sbjct: 195 PFDASGRRHTSFASVYVSPIIEDDIEVDIRPEDLRIDTYRSQGAGGQHVNKTESAVRITH 254 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK--RMANERSANRKLQIGSGDRSER 305 +PTGI+V +E+SQH+NR AM++LR+RLY+ ++ E+ A K I G+ + Sbjct: 255 LPTGIVVQCQNERSQHKNREIAMRMLRSRLYEYYQQLREEEQEKKAIEKKDISWGN---Q 311 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 IR+Y F + D R + ++ V+ G +D I L + + Sbjct: 312 IRSYVFQPYTMVKDLRTRVETGNIQAVMDGDLDMFIEAYLLQQWKERQEA 361 >gi|290968807|ref|ZP_06560344.1| peptide chain release factor 2 [Megasphaera genomosp. type_1 str. 28L] gi|290781103|gb|EFD93694.1| peptide chain release factor 2 [Megasphaera genomosp. type_1 str. 28L] Length = 352 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 173/351 (49%), Gaps = 12/351 (3%) Query: 9 ICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + R +++++MS+ D ++++E A+ + ++ + ++ + Sbjct: 1 MARKEERIMDLDIQMSDPDFWNHPDTARRISQEATALKEEVQGHRALMEQVADLREYLEL 60 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + S D+ + + + LL D + I+ AG GG+EA Sbjct: 61 AMEEKDTSLTADIEKQYEALAGEVEK-----REIRLLLSGEYDRCNAIVTFHAGAGGTEA 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + + ++ D+ G K ++ G + +K E GVHR+ Sbjct: 116 QDWTQMLIRMYTRWAERNGYVMRLMDLQPGDEAGVKSATFSVDGEYAYGYLKSEKGVHRL 175 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS V V+PE ++DV I ++++R+D RASG+GGQHVN T SAV Sbjct: 176 VRISPFDAAARRHTSFTAVDVMPELPDDVDVKINMDEVRVDYFRASGAGGQHVNKTSSAV 235 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ +K LRA+L+++E ++ A ++ + Sbjct: 236 RMTHLPTGIVVQCQNERSQLQNKEMCLKYLRAKLFELEEEKKAQLKAEIGGTHQA-IEWG 294 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IR+Y F + DHR ++ + V+ G +D I L + + Sbjct: 295 SQIRSYVFHPYNLVKDHRTDVETGNTQAVMDGELDKFIEGFLQREKNRKTA 345 >gi|313893701|ref|ZP_07827268.1| peptide chain release factor 2 [Veillonella sp. oral taxon 158 str. F0412] gi|313441715|gb|EFR60140.1| peptide chain release factor 2 [Veillonella sp. oral taxon 158 str. F0412] Length = 330 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 112/334 (33%), Positives = 177/334 (52%), Gaps = 18/334 (5%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 MS+ D K E + + + + Y Q + +D + ++ DS + + Sbjct: 1 MSDPTFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANVMLEMAIEEDDSSMESEIK 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 V AIE+ + + E LLL D + IL AG GG+EA + L RMY R+A Sbjct: 61 EYVKAIEETVEKQEV----LLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + +E++ D+ G K I G F +K E GVHR+ R+ +A+ R HTS Sbjct: 117 EKSGFSIELMDEQPGDEAGTKSSTFLIKGENAFGYLKSEKGVHRLVRISPFDAAARRHTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A V V+PE + +++I ++D+++DT RASG+GGQH+N TDSAVR+TH PTGI+V + Sbjct: 177 FAAVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQT 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS----GDRSERIRTYNFSQG 314 ++SQ QNR +A+++LRA+L+++E ++ A K QIG + +IR+Y F Sbjct: 237 QRSQMQNREQALRLLRAKLFELELEK-----QAEIKEQIGGTYQAIEWGSQIRSYVFHPY 291 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N+ ++ V+ G +D I L Sbjct: 292 NLVKDHRTNVETGNVQAVMDGNLDQFIEGFLKKE 325 >gi|289549137|ref|YP_003474125.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484] gi|289182754|gb|ADC89998.1| peptide chain release factor 2 [Thermocrinis albus DSM 14484] Length = 372 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 108/354 (30%), Positives = 183/354 (51%), Gaps = 12/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 ++ +K E++ M+ S + K + + I + ++ D+ ++ Sbjct: 24 KLDSMKEELKELDNLMASSHIWNQQEKAKKILQRRKWLEENIQQLEATEKVLSDIRELLH 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + ++ ++ ++ D K+ L I+AG GG EA Sbjct: 84 ITEEEDLETQTL---LKEELEKAEQMIKDMEIRAFLSGEMDAKNAYLTIQAGAGGVEACD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A ++VEV+ + +D G K I G + +K ESGVHR+ R Sbjct: 141 WAQMLLRMYRRWAEKHGYEVEVVDITPDDVAGIKSATLLIKGPYAYGYLKGESGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS A+V V+P+ E +++I EDI ++T RASG+GGQ+VN TD+AVRI Sbjct: 201 ISPFDANARRHTSFASVTVVPQIDESINIEIREEDIEMETFRASGAGGQYVNKTDTAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 H PTGI+V E+SQ+QNR++A+++L+A+LY ++ + + ++ A K +IG G Sbjct: 261 RHKPTGIVVTCQQERSQYQNRMKALELLKAKLYQLKLQELEEKKRALEGEKTEIGWG--- 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +IR+Y F + + D R + + +E V+ G ID I L +AK AS Sbjct: 318 HQIRSYVFQPYQLVKDLRTGVEIGDVESVMDGEIDPFIEAYLRW-KAKQEAQAS 370 >gi|114609863|ref|XP_518818.2| PREDICTED: mitochondrial translational release factor 1-like isoform 6 [Pan troglodytes] Length = 380 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 145/314 (46%), Positives = 207/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIRLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 301 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|237755833|ref|ZP_04584431.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691998|gb|EEP61008.1| peptide chain release factor 2 [Sulfurihydrogenibium yellowstonense SS-5] Length = 369 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 119/345 (34%), Positives = 180/345 (52%), Gaps = 16/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L+ +++ M++ + +++ + + +I D+K D T++ Sbjct: 27 EKLEEEIKQLDDLMADPNFWNDTKKAQEISSRRNYLGEKLEEILTVDEKINNLLDYITLL 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E+ + + E+ IEKEI LE + IL ++AG+GG EA Sbjct: 87 EMEE-DQELYNEVEKELKEIEKEISRLELGSLLSDEMDSKNA----ILTVQAGSGGVEAC 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A R ++VE++ +D G K I G + +K E GVHR+ Sbjct: 142 DWTEMLLRMYTRWAEKRGYQVELVDFQPDDVAGVKSATVIIKGPYAYGYLKGEQGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ R HTS + V+V+PE E V+I ED+RIDT RA G+GGQHVN TDSAVR Sbjct: 202 RISPFDANKRRHTSFSAVSVIPEIDEDIKVEINEEDLRIDTYRAGGAGGQHVNKTDSAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHIPTGI+V SE+SQ QN+L+AM +L+A+LY +E ++ ++ K I G Sbjct: 262 ITHIPTGIVVACQSERSQLQNKLKAMNMLKAKLYQLELEKRKEKQKELEGEKKDITWG-- 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + + D R +E V+ G IDD I L Sbjct: 320 -SQIRSYVFQPYQMVKDLRTGFETGNIEAVMDGEIDDFIESYLKW 363 >gi|160947120|ref|ZP_02094287.1| hypothetical protein PEPMIC_01052 [Parvimonas micra ATCC 33270] gi|158446254|gb|EDP23249.1| hypothetical protein PEPMIC_01052 [Parvimonas micra ATCC 33270] Length = 349 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 172/346 (49%), Gaps = 10/346 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + H I L++ + +E + + + + + KI + ++ +D Sbjct: 1 MIHFDISKLEDEYKNLESQSFKEDFWNDSKSAKSILDNMKNLKFKIETFTSLSRKIEDSI 60 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + + + + E L ++N L++ + + + ILEI AG GG+ Sbjct: 61 EFLEILSDEEFMEYEKEALKNIYNIEKEYLSLKLNTLMVGEYDSN--NAILEIHAGAGGT 118 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L R+Y R+ + + +L + + +GG K + + G+ + +K E GVH Sbjct: 119 DAQDWTEMLQRLYTRWINSKGFSFSILDYNSDTEGGIKSVTLKVDGKNAYGFLKGEKGVH 178 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ ++S + HTS A+V V P D++I +D+RIDT R+ G+GGQHVN TDS Sbjct: 179 RLVRISPYDSSNKRHTSFASVDVFPEIEEITDIEINPKDLRIDTYRSGGAGGQHVNKTDS 238 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGS 299 AVRITHIPTG+ V SE+SQ NR AM+ L A+L ++++ + + QI Sbjct: 239 AVRITHIPTGVTVSCQSERSQMFNRDTAMRQLIAKLLIIKQEENREKIEDIQGKYSQIAW 298 Query: 300 GDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 G +IR+Y F + DHR +E V+ G ID+ IN L Sbjct: 299 G---SQIRSYVFQPYTLVKDHRTGYETGNVESVMNGNIDEFINQYL 341 >gi|260655334|ref|ZP_05860822.1| peptide chain release factor 2 [Jonquetella anthropi E3_33 E1] gi|260629782|gb|EEX47976.1| peptide chain release factor 2 [Jonquetella anthropi E3_33 E1] Length = 348 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 107/344 (31%), Positives = 175/344 (50%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVD--AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 L+ + E+ LR S+ +++ + +S + S + +D ++ DL T+ Sbjct: 11 EGLRRQADELRLRSSDPAFWSTGDAKEVS---SQLSRLESSLEHWDHLERMFSDLETMAE 67 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + A+ + + E LL + D + I+ I AG+GG ++ Sbjct: 68 LLEIDDDPELAAEFDAKSGEYSREV--EHRQMDLLLSEAYDSRDAIVTIHAGSGGLDSQD 125 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +K +L +++ G K + T+SG + +K E+GVHR+ R Sbjct: 126 WAEMLYRMYLRWCEENGYKTRLLDLQQDEEAGLKSVTFTVSGSCAYGYLKSETGVHRLVR 185 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + + R HTS + V V P+ +++V I ED+RIDT R+SG+GGQHVN TDSAVRI Sbjct: 186 ISPFDTNKRRHTSFSGVVVSPQLPDDVEVAIRDEDLRIDTYRSSGAGGQHVNMTDSAVRI 245 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQH N+ AM+VLR++LYD++ + E + S + Sbjct: 246 THLPTGIVVSCQNERSQHMNKATAMQVLRSKLYDLQVQNRRQELDDLAGEKKES-SWGHQ 304 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y + DHR + VL G +D I L + Sbjct: 305 IRSYVLQPYTLVKDHRTGEETGNVAAVLDGDLDRFILAYLRWRK 348 >gi|218282777|ref|ZP_03488959.1| hypothetical protein EUBIFOR_01545 [Eubacterium biforme DSM 3989] gi|218216361|gb|EEC89899.1| hypothetical protein EUBIFOR_01545 [Eubacterium biforme DSM 3989] Length = 346 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 168/350 (48%), Gaps = 12/350 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEE---YAAISPIISKISIYDQKKQEEQ 60 +SH + + + + + E K + A+ I+ + D + Sbjct: 1 MSHFDLSSKNKQIEDYDKQTLEPDFWQDQKKAQQVIRAKNALKDIVDRYEELDLQLNSLN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D + SE + + ++ + +L D + ILEI G Sbjct: 61 DTADELK-----SEFDEELMMIAEEEYMDMDKKFENFEIQVLLSHEYDQNNAILEIHPGA 115 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ + L+RMY RYA +KV VL D+ G K + + G + +K E Sbjct: 116 GGTESCDWASMLYRMYTRYAEKHGFKVTVLDYLPGDEAGIKSVTFLVEGDKAYGYLKSEK 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ ++ R HTS A++ V+P+ + ++DI ED+ ++T RASG+GGQH+N Sbjct: 176 GVHRLVRISPFDSGARRHTSFASLDVMPQFNDEIEIDIKPEDLIVETKRASGAGGQHINK 235 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+ H PTGI+ + +SQH+NR ++VL++RLY +E + + + + +Q Sbjct: 236 TDSAVRMVHKPTGIVATCQNGRSQHENREECLRVLKSRLYQLEIEEQEKKIAQIKGVQ-S 294 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + +IR+Y + D R +++ VL G +D+ I L + Sbjct: 295 ANEWGSQIRSYVMHPYSLVKDVRTGYETSQVQSVLDGDLDEFIFAYLKSQ 344 >gi|77413702|ref|ZP_00789885.1| peptide chain release factor 2 [Streptococcus agalactiae 515] gi|77160247|gb|EAO71375.1| peptide chain release factor 2 [Streptococcus agalactiae 515] Length = 326 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 100/333 (30%), Positives = 176/333 (52%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K + ++ + ++ + D +++ + Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDEDDSLKEELEEN 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ + ++ LL + D + ILEI G+GG+EA + L RMY R+ Sbjct: 61 LMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDLLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS A Sbjct: 117 NGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFA 176 Query: 203 TVAVLPEAAEIDVDIPLED-IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE + + I++DT R+ G+GGQ+VN + VR+THIPTGI+V+S+ ++ Sbjct: 177 SVEVMPELDDTIEVEVRDYDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVSSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N L +++ V+ G I+ I+ L Sbjct: 294 DHRTNFELAQVDKVMDGEINGFIDAYLKWRIED 326 >gi|317133128|ref|YP_004092442.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3] gi|315471107|gb|ADU27711.1| peptide chain release factor 2 [Ethanoligenens harbinense YUAN-3] Length = 377 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 106/341 (31%), Positives = 176/341 (51%), Gaps = 6/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + E+E + ++ + + KI+ Y+ +++ D +I Sbjct: 30 LDAARAEVRELEEKAAQQDFWNDIENSQSVLQKTRQLKDKIASYEALRRKTDDTLALIEL 89 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + ++ LA+ + + + L D K+ IL AG GG+EA + Sbjct: 90 ADEEEDLSVLAEAAEAVDSVRAQI--DTMRLATLLTGEYDAKNAILTFHAGAGGTEAQDW 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY R+A + V+VL D ++ G K I G + +K E GVHR+ RV Sbjct: 148 AEMLYRMYTRWAERHGFNVQVLDYLDGEEAGLKSASVLIEGLNAYGYLKSEIGVHRLVRV 207 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS A+V V+PE + +VDI EDI++D R+SG+GGQH+N T SAVR+T Sbjct: 208 SPFDSSGRRHTSFASVEVMPEIDDSIEVDIRPEDIKMDVFRSSGAGGQHINKTSSAVRLT 267 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQHQNR AM++L+++L +++ + ++ + +Q +I Sbjct: 268 HLPTGIVVSCQNERSQHQNREMAMRMLKSKLVEIKEREHYDKIEDIKGVQ-KEIAWGSQI 326 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y F + DHR + + V+ G +D IN L A Sbjct: 327 RSYVFMPYTLVKDHRTSFESGNIGAVMDGDLDGFINAYLKA 367 >gi|323486370|ref|ZP_08091695.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum WAL-14163] gi|323695006|ref|ZP_08109153.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673] gi|323400352|gb|EGA92725.1| hypothetical protein HMPREF9474_03446 [Clostridium symbiosum WAL-14163] gi|323500950|gb|EGB16865.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673] Length = 335 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 105/329 (31%), Positives = 172/329 (52%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 M E D + T+ + + Y +Q+ +D+ +I +D + Q Sbjct: 1 MEEPGFWDDPERSTKTVREAKNLKDTVETYRHLEQQYEDIQIMIEMGYEENDPSMIPEIQ 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 + + ++ L D+ + IL++ AG GG+EA + L+RMY+R+A Sbjct: 61 EMLDEFINSLEDI----RTKTLLSGEYDNCNAILKLNAGAGGTEAMDWCSMLYRMYQRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + + EVL D D+ G K I I+G F +K E GVHR+ R+ A+G+ TS Sbjct: 117 DKKGYTTEVLDFLDGDEAGIKSITVQINGENAFGYLKSEKGVHRLVRISPFNAAGKRQTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 + V+P+ E D+++ +D+RIDT R+SG+GGQH+N T SA+RITHIPTGI+V + Sbjct: 177 FVSCDVMPDIEEDLDIEVNQDDLRIDTYRSSGAGGQHINKTSSAIRITHIPTGIVVQCQN 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 E+SQ QN+ +AM++L+A+LY ++++ A + S R + + +IR+Y + Sbjct: 237 ERSQFQNKDKAMQMLKAKLYLLKQQENAEKLSDIR-GDVKDINFGNQIRSYVMQPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + V+ G ID I+ L Sbjct: 296 DHRTNAENGNVNAVMDGDIDLFISAYLKW 324 >gi|320161067|ref|YP_004174291.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1] gi|319994920|dbj|BAJ63691.1| peptide chain release factor 2 [Anaerolinea thermophila UNI-1] Length = 351 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 170/349 (48%), Gaps = 14/349 (4%) Query: 9 ICDLKNR---FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I DL +R +++ D I+ + +I ++Q + QD + Sbjct: 6 IFDLSSREMLLEQLQKEAENPGIWDDPTSAQRLMKRIADLREEIEGWNQFLKRCQDGLEL 65 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + ++ + + + L D ++ +L I AG GG+++ Sbjct: 66 AESED------ESLREDLEKEISALEKELQQRELTTLLSGPYDHENALLTINAGAGGTDS 119 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ R + E+L S+ ++ G K + ++G + ++ E GVHR+ Sbjct: 120 QDWASMLMRMYLRWCERRGFDSEILDFSEGEEAGIKSVTIAVTGPYAYGYLRGEKGVHRL 179 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSA 243 R+ +A+ R HTS A V VLPE + D +I +D+RID R+S +GGQ+V +A Sbjct: 180 VRLSPFDAAHRRHTSFAQVEVLPEISNGDNEIQINPDDLRIDIYRSSSAGGQNVQKNATA 239 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V +E+SQ QNR AM+VLRARL +++R+ + + R I + Sbjct: 240 VRITHIPTGIVVSCQNERSQMQNRENAMRVLRARLAELKRQEQERQLAELRGEYIK-AEW 298 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y + + DHR + VL G +D I L + + K Sbjct: 299 GSQIRSYVLHPYQLVKDHRTEYETGNTQAVLDGELDGFIEAYLRSQKTK 347 >gi|115472651|ref|NP_001059924.1| Os07g0546600 [Oryza sativa Japonica Group] gi|33146529|dbj|BAC79675.1| putative translation releasing factor2 [Oryza sativa Japonica Group] gi|113611460|dbj|BAF21838.1| Os07g0546600 [Oryza sativa Japonica Group] Length = 460 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + ++S D K E A++ + ++ + + K + ++ T++ Sbjct: 108 LDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKL 167 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D + ++ I AG GG++A + Sbjct: 168 TEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDW 227 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 228 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQ 287 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P E +D IP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 288 SPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRM 347 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 348 VHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 406 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR Y F + + D R + V+ G +D I L + +A+E Sbjct: 407 IRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKY----KLSAAAE 455 >gi|313888002|ref|ZP_07821680.1| peptide chain release factor 2 [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845957|gb|EFR33340.1| peptide chain release factor 2 [Peptoniphilus harei ACS-146-V-Sch2b] Length = 371 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 119/342 (34%), Positives = 174/342 (50%), Gaps = 10/342 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I LK + E+ + E D + + KI YD+ D +I Sbjct: 28 IDSLKEKVVELNKKQMEPGFWDDNESAQKVIRETNSYQRKIDQYDKLIDLITDAEDLIAL 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + L E E E ++N LL + IL I AG GG+EA + Sbjct: 88 MEIEEDYSSYSDFQELVDEIEKDTAEFKLNTLLNGEYDSH--DAILSIHAGAGGTEAQDW 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RYA + +KVE L D+ G K + ISG + +K E GVHR+ R+ Sbjct: 146 ASMLLRMYTRYAENKGFKVETLDLLKEDEAGIKSVTLKISGDNAYGYLKGEKGVHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS ++V V PE + +I E+++IDT R+SG+GGQHVNTTDSAVRIT Sbjct: 206 SPFDSNKRRHTSFSSVDVFPEIDDDTEVEIKDEELKIDTYRSSGAGGQHVNTTDSAVRIT 265 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSE 304 HIPTGI+V +E+SQ QNR +AM +L+A+L + + + + QI G Sbjct: 266 HIPTGIVVQCQNERSQIQNREKAMNMLKAKLVALAEEEKKEKIEDLQGNYSQIAWG---S 322 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N+ + +E V+ G +D IN L Sbjct: 323 QIRSYVFQPYTMVKDHRTNVDVGDVEKVMDGDLDIFINAYLQ 364 >gi|295100603|emb|CBK98148.1| bacterial peptide chain release factor 2 (bRF-2) [Faecalibacterium prausnitzii L2-6] Length = 373 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 106/343 (30%), Positives = 172/343 (50%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R E+E MS D + + + + K++ +++ + D T++ Sbjct: 27 IDASRKRVQELEHTMSRPGFYDDAELSKKVFDEVGDLKGKLNRFEKLQGLYDDAETMLVM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + + E E + + D + IL AGTGG+EA + Sbjct: 87 LDEEYDPEMVPEAEEAVNAVGKAVDEL--QLMTMLNGEYDHSNAILTFHAGTGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY ++A VEVL D D+ G K + G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYNKWAQAHGMTVEVLDYQDGDEAGMKSASMMVKGANAYGLLKSENGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A++ V+PE I VDI EDI + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFASLEVMPELDNTIQVDIRPEDIEMQVYRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 H PTGI+V +++SQ QNR AM++L+A+LY + +++ ++ + +Q I G Sbjct: 265 HKPTGIVVSCQTQRSQFQNRDYAMEMLKAKLYQIAKQQHMDKIDDIKGVQNEIAWG---H 321 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR N ++ V+ G +D I L A Sbjct: 322 QIRSYVFMPYTMVKDHRTNYETGNVDAVMDGDLDGFIFAYLKA 364 >gi|227546362|ref|ZP_03976411.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|317482557|ref|ZP_07941572.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA] gi|227213343|gb|EEI81215.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis ATCC 55813] gi|316915979|gb|EFV37386.1| peptide chain release factor 2 [Bifidobacterium sp. 12_1_47BFAA] Length = 374 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK ++E + + D + + +S S++ + Q D+ T++ Sbjct: 25 DVDRLKADIKDLETQAAAPGLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGHEEGDQDSLDEAQGEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I+ I + + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373 >gi|269215856|ref|ZP_06159710.1| peptide chain release factor 2 [Slackia exigua ATCC 700122] gi|269130806|gb|EEZ61882.1| peptide chain release factor 2 [Slackia exigua ATCC 700122] Length = 364 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 161/342 (47%), Gaps = 8/342 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + + R +++ +S+ D S I S + Y +D + Sbjct: 25 IEENERRLHDLDAVISQPGFWDDAQAAQATSKRASDIRSTLDEYRAACATLEDARAALEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + + +E D D I+ + G+GG EA + Sbjct: 85 IEEDDAFAVEFDELRAGLSSALDRMEV----ESWFTDPSDACDAIVSVNPGSGGLEAQDW 140 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY RYA + WKV++L + G V I G+ F ++ E GVHR+ R+ Sbjct: 141 TDMLYRMYVRYAEKKGWKVKLLDVVPGEVIGLDRAVVQIEGKNAFGMLRSEHGVHRLVRI 200 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R T+ A V VLP +I+V+I D+R+D R+SG GGQ VNTTDSAVR+T Sbjct: 201 SPTDDKKRRQTTFAGVEVLPVVEDDIEVEINPSDVRVDVYRSSGPGGQCVNTTDSAVRLT 260 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +EKSQ QN+ A KVLRA+LY++ER++ +E A R + +I Sbjct: 261 HLPTGIVVTCQNEKSQLQNKESAFKVLRAKLYELERQKREDEMDALR-GEKRDNSFGSQI 319 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R Y + + D R + ++ VL G ID+ + Sbjct: 320 RNYVLYPYQLVKDVRSGVETGNVDAVLDGQIDEFVIGYHRWR 361 >gi|168210100|ref|ZP_02635725.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC 3626] gi|170711768|gb|EDT23950.1| peptide chain release factor 2 [Clostridium perfringens B str. ATCC 3626] Length = 323 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETAKEIIS 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYIRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + + +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKGYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N+ + V+ G ID+ I L Sbjct: 296 HRTNVETSNVNGVMDGDIDNFIIAYL 321 >gi|34556562|ref|NP_906377.1| peptide chain release factor 2 [Wolinella succinogenes DSM 1740] gi|81833248|sp|Q7MAP4|RF2_WOLSU RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|34482276|emb|CAE09277.1| PEPTIDE CHAIN RELEASE FACTOR 2 [Wolinella succinogenes] Length = 368 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 184/344 (53%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++NR EIE + K +E + I+ K +Q + ++L + Sbjct: 27 DSIENRLGEIEALEHSEGFWNDATKAGEVQKEKRKLERILKKYEEANQAINDAKELFEIA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N + + + + + ++ D + I+ I G GG+E+ Sbjct: 87 TQDNDEE-----TLGLLFEESGHLEKEIKSVEIEVMLSGEHDGSNAIITIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +KVEVL + ++ G K+ I G + +K E+G+HR+ Sbjct: 142 DWASILYRMYLRWAERRGFKVEVLDYQEGEEAGIKDASFIIKGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS +V V PE +ID++I +D+R+DT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDANAKRHTSFTSVMVSPEVDDDIDIEIEEKDLRLDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+N+ A K+L++RLY++E + + E + K +IG G Sbjct: 262 ITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELAKRSAEYDSMEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + ++ D R N+ +E +L G +D+++ +L + Sbjct: 319 QIRSYVLAPYQQVKDTRSNIAYSNIEAILDGDLDELLEGVLISQ 362 >gi|322688633|ref|YP_004208367.1| peptide chain release factor [Bifidobacterium longum subsp. infantis 157F] gi|320459969|dbj|BAJ70589.1| peptide chain release factor [Bifidobacterium longum subsp. infantis 157F] Length = 374 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK ++E + + D + + +S S++ + Q D+ T++ Sbjct: 25 DVDRLKADIKDLETQAAAPGLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGREEGDQDSLDEAQSEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I+ I + + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373 >gi|291456213|ref|ZP_06595603.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213] gi|291381490|gb|EFE89008.1| peptide chain release factor 2 [Bifidobacterium breve DSM 20213] Length = 374 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 108/355 (30%), Positives = 172/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + LK ++E + + D + + +S S++ Q D+ T+ Sbjct: 25 DVDRLKADIKDLEAQAAAPGLWDNPDNAQKITSKLSAAESQLKRLTSASQRIDDVETLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D E D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGQEEQDQESLDEAQNEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A VDIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHVDIPDTDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I++ I + + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINNFIEAGIRWRHEQRRAAENE 373 >gi|237729831|ref|ZP_04560312.1| peptide chain release factor 2 [Citrobacter sp. 30_2] gi|226908437|gb|EEH94355.1| peptide chain release factor 2 [Citrobacter sp. 30_2] Length = 310 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 167/316 (52%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E +++ I+ + Q ++ L + + + + + A + + Sbjct: 1 MGKERSSLEAIVDTLDQMSQGLEDVSGLLELAVEADDEETFNEAV-----AELDTLEDKL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + D C L+I+AG+GG+EA + L RMY R+A R +K E++ S+ Sbjct: 56 AQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESE 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID 214 + G K + I+G + ++ E+GVHR+ R ++ GR HTS ++ V PE + Sbjct: 116 GEVAGIKSVTIRIAGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDI 175 Query: 215 VDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D+RID RASG+GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK Sbjct: 176 DIDINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 ++A+LY++E ++ E+ + K IG G +IR+Y RI D R + + Sbjct: 236 MKAKLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGSLDQFIEASLKA 308 >gi|296169215|ref|ZP_06850868.1| peptide chain release factor RF2 [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896113|gb|EFG75780.1| peptide chain release factor RF2 [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 368 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 161/346 (46%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + +S ++ ++ +Q DL + Sbjct: 24 DVDGLRSRIEKLEHEASDPQLWDDQSNAQRVTSQLSHAQGELRRIEELRQRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + LA+ + L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEDAADALAEADAELKALRADI--EATEVRTLLSGEYDEREALVTIRSGAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ R Sbjct: 142 WAEMLMRMYLRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQSRRQTSFAEVEVLPVVDTTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVRL 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K + GS + Sbjct: 262 THIPTGIVVTCQNEKSQLQNKISAMRVLQAKLLERKRSEERAELDAL-KGEGGS-SWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + K Sbjct: 320 MRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDIDGFLEAGIRWRNRK 365 >gi|148992417|ref|ZP_01822112.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68] gi|147928734|gb|EDK79747.1| peptide chain release factor 2 [Streptococcus pneumoniae SP9-BS68] gi|332073119|gb|EGI83598.1| peptide chain release factor 2 [Streptococcus pneumoniae GA17570] Length = 325 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+T+IPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSYEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|166795303|ref|NP_061914.3| peptide chain release factor 1-like, mitochondrial isoform a [Homo sapiens] gi|74753314|sp|Q9UGC7|RF1ML_HUMAN RecName: Full=Peptide chain release factor 1-like, mitochondrial; AltName: Full=Mitochondrial translational release factor 1-like; AltName: Full=mtRF1a; Flags: Precursor gi|6706658|emb|CAB65994.1| mitochondrial translational release factor 1-like [Homo sapiens] gi|158254756|dbj|BAF83351.1| unnamed protein product [Homo sapiens] Length = 380 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 207/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K++E ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKERELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 301 EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|167750196|ref|ZP_02422323.1| hypothetical protein EUBSIR_01170 [Eubacterium siraeum DSM 15702] gi|167656758|gb|EDS00888.1| hypothetical protein EUBSIR_01170 [Eubacterium siraeum DSM 15702] gi|291556130|emb|CBL33247.1| bacterial peptide chain release factor 2 (bRF-2) [Eubacterium siraeum V10Sc8a] Length = 370 Score = 213 bits (542), Expect = 4e-53, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 177/342 (51%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +LK ++E + ++ + + I + + Y++ ++ D+ T++ Sbjct: 26 DLDNLKAEIVKLEEQSAQPDFWNDVENSQKISQKIGEDKNIVQSYEKLRESYDDVMTMLE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + L +I+ LA L D + IL AG GG+EA Sbjct: 86 LAQEEDDESMLPEIQELAKHFRTEL--ESQKLATLLSGEFDHNNAILTFHAGAGGTEAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L+RMY +A KV VL D ++ G K + GR + +K E+GVHR+ R Sbjct: 144 WVEMLYRMYNHWAEQHGMKVTVLDYLDGEEAGIKSASILVEGRNAYGYLKSENGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V ++SGR HTS A+V V+PE E D++I ++I++D RASG+GGQ VN T SAVRI Sbjct: 204 VSPFDSSGRRHTSFASVEVMPEINEDIDIEISEDEIKMDVYRASGAGGQKVNKTSSAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+ +E+SQHQNR AM++L+++L +++ + ++ S + Q+ + Sbjct: 264 THIPTGIVCACQTERSQHQNREYAMRMLKSKLLEIKEREHLDKISDIKGEQL-QIAWGAQ 322 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR + + V+ G +D IN L A Sbjct: 323 IRSYVFMPYTMVKDHRTGYEMGNIGAVMDGDLDGFINAYLKA 364 >gi|325971169|ref|YP_004247360.1| peptide chain release factor 2 [Spirochaeta sp. Buddy] gi|324026407|gb|ADY13166.1| peptide chain release factor 2 [Spirochaeta sp. Buddy] Length = 367 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 171/346 (49%), Gaps = 10/346 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + + ++E + E+ D + +A ++ + + + D+ ++ + Sbjct: 26 DKMLSEIQKLETKTLEAGFWDDRKGAEQLFAQLNGLKDSYYPWKELIDSLGDMAELMEIY 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + + I + + ++ L D C L I AG GG+EA+ + Sbjct: 86 ADEPDNPEEEAQIDAQITQLKEQY-GQLKLKTLLDGKFDKNDCFLTIHAGAGGNEASDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY RY +K EVL D+GG K +SG F +K E+GVHR+ R+ Sbjct: 145 NMLMRMYLRYCERNGFKSEVLDLL-EDEGGIKSATIRVSGPYSFGYLKGEAGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ R HTS +V P I++D+ ED R+DT RA G+GGQHVN TDSAVRITH Sbjct: 204 PFDSQKRRHTSFTSVYASPVIDDTIEIDLKPEDYRLDTYRAGGAGGQHVNKTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK--RMANERSANRKLQIGSGDRSER 305 +GI+V +E+SQ N+ A K+L++RLY+ R+ +++ A K +I G + Sbjct: 264 YESGIVVQCQNERSQVMNKDVAFKMLKSRLYEYYRELKEKEHQKDAIEKKEITWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F + DHR ++T+ ++ V+ G I D I L Q + Sbjct: 321 IRSYVFQPYTMVKDHRTSVTVGNIQAVMDGEIGDFIEGYLQWAQKE 366 >gi|152991913|ref|YP_001357634.1| peptide chain release factor 2 [Sulfurovum sp. NBC37-1] gi|166225117|sp|A6Q718|RF2_SULNB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|151423774|dbj|BAF71277.1| peptide chain release factor 2 [Sulfurovum sp. NBC37-1] Length = 364 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +LK R EIE + + K+++E I+ + + + + Sbjct: 27 DELKKRLDEIEEMQQDPNFWNDTANAGKISQEKTRTERILETYHNANDAVYDAIEYFEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E ++ + +++ LE ++ D + I+ I G GG+E+ Sbjct: 87 K-AEKDEETLEMLYEDAETLKERTNALEVQMM----LSGEHDSNNAIVSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A +KVEVL ++ G K++ I G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRWAERHGFKVEVLDYQPGEEAGIKDVSFIIKGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS +V V P +ID++I +D+RIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFTSVMVSPEIDDDIDIEIEDKDLRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ AMK+L++RLY+ E + E K IG G Sbjct: 262 ITHEPTGIVVQCQNDRSQHKNKSAAMKMLKSRLYEYEMAKKQAEIDGVEKSDIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y ++ D R ++ +L G ID ++ +L + Sbjct: 319 QIRSYVMQPYQQVKDTRSGQAFTNVDAILDGDIDKLLEGVLISQ 362 >gi|284029674|ref|YP_003379605.1| peptide chain release factor 2 [Kribbella flavida DSM 17836] gi|283808967|gb|ADB30806.1| peptide chain release factor 2 [Kribbella flavida DSM 17836] Length = 373 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 168/349 (48%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++ +++ D + + +S + + + + DL +I Sbjct: 25 DLDALRREIADLGEQVAAPDLWDDQANAQKVTSRLSSLQADVERVTNLRSRIDDLGVMIE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D++ ++ E+ A+ K I+ LE L D++ ++ IR+G GG +A Sbjct: 85 LSREENDADSLAESEKEIAALAKSIQSLEV----RTLLSGEYDEREALVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + EV +S ++ G K + + + ESG HR+ Sbjct: 141 ADFAEMLQRMYLRWAERHGYPTEVYDTSYAEEAGLKSTTFGVKAPYAYGTLSVESGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++D+P E++RID R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPVLEQTDEIDVPEEELRIDVYRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTG +V +EKSQ QN+ AM +L+A+L +++ + A R GS Sbjct: 261 RITHLPTGTVVSCQNEKSQLQNKASAMVILKAKLLALKKAEERAQIDALRGDVQGS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +++R+Y + + D R V G IDD + + + Sbjct: 319 DQMRSYVLHPYQMVKDLRTQYESGNTSGVFDGEIDDFVEAGIRWRRTGQ 367 >gi|301801602|emb|CBW34300.1| peptide chain release factor 2 [Streptococcus pneumoniae INV200] Length = 325 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 181/330 (54%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + + + + + ++ + ++ ++ D + D + Sbjct: 1 MTEPDFWNDNIAAQKMSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDELVAQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 61 ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+T+IPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTYIPTGIVVQSTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + + +++ V+ G +D I+ L Sbjct: 294 DHRTSFEVAQVDKVMDGDLDGFIDAYLKWR 323 >gi|329946372|ref|ZP_08293939.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str. F0386] gi|328527348|gb|EGF54346.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 170 str. F0386] Length = 373 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 170/349 (48%), Gaps = 6/349 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R AE+ + S D +A+S + + + + +DL ++ Sbjct: 26 EALRARIAELSEQASAPDLWDDPDSAQVVTSALSHAQADLKRVESLGERIEDLEAMVELA 85 Query: 70 -NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + E + I + +++ L D + ++ IR+G GG +AA F Sbjct: 86 GEEEGDDAAEILAEAESDLTAISKDLSDLEIRTLLSGEYDPRDAVVTIRSGAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A ++ V+VL++S ++ G K + + + + E G HR+ R+ Sbjct: 146 AEMLLRMYTRWAERHEYPVKVLNTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P + +DIP DIRID R+SG GGQ VNTTDSAVRIT Sbjct: 206 SPFDNQGRRQTSFAAVEVIPLIESTDHIDIPETDIRIDVFRSSGPGGQSVNTTDSAVRIT 265 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTG++V+ EKSQ QNR AM+VL++RL ++++ ++ S +++ Sbjct: 266 HLPTGLVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQQEEDAKKKELAGDVKAS--WGDQM 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+Y + + + D R + + + V G ID I+ + + + Sbjct: 324 RSYVLNPYQMVKDLRTSFEVGNPDSVFDGDIDGFIDAGIRWRKQQETAE 372 >gi|23465750|ref|NP_696353.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705] gi|189439805|ref|YP_001954886.1| peptide chain release factor 2 [Bifidobacterium longum DJO10A] gi|239622364|ref|ZP_04665395.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453666|ref|YP_003660809.1| peptide chain release factor 2 [Bifidobacterium longum subsp. longum JDM301] gi|312133211|ref|YP_004000550.1| prfb [Bifidobacterium longum subsp. longum BBMN68] gi|322690619|ref|YP_004220189.1| peptide chain release factor [Bifidobacterium longum subsp. longum JCM 1217] gi|23326435|gb|AAN24989.1| peptide chain release factor 2 [Bifidobacterium longum NCC2705] gi|189428240|gb|ACD98388.1| Protein chain release factor B [Bifidobacterium longum DJO10A] gi|239514361|gb|EEQ54228.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517272|emb|CBK70888.1| bacterial peptide chain release factor 2 (bRF-2) [Bifidobacterium longum subsp. longum F8] gi|296183097|gb|ADG99978.1| peptide chain release factor 2 [Bifidobacterium longum subsp. longum JDM301] gi|311772412|gb|ADQ01900.1| PrfB [Bifidobacterium longum subsp. longum BBMN68] gi|320455475|dbj|BAJ66097.1| peptide chain release factor [Bifidobacterium longum subsp. longum JCM 1217] Length = 374 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 105/355 (29%), Positives = 171/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK ++E + + D + + +S S++ + Q D+ T++ Sbjct: 25 DVDRLKADIKDLETQAAAPGLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I+ I + + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373 >gi|160944128|ref|ZP_02091358.1| hypothetical protein FAEPRAM212_01630 [Faecalibacterium prausnitzii M21/2] gi|158444804|gb|EDP21808.1| hypothetical protein FAEPRAM212_01630 [Faecalibacterium prausnitzii M21/2] gi|295105045|emb|CBL02589.1| bacterial peptide chain release factor 2 (bRF-2) [Faecalibacterium prausnitzii SL3/3] Length = 373 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 175/352 (49%), Gaps = 10/352 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R E+E MS D + + + + K++ +++ + D T++ Sbjct: 27 IEASRKRVQELEHTMSRPGFYDDAELSKKVFDEVGDLKGKLNRFEKLQGLYDDAETMLEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + + E E + + D + IL AGTGG+EA + Sbjct: 87 LDEEYDPAMIPEAEEAVNTVGKAVEEL--QLMTMLNGEYDHSNAILTFHAGTGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY ++A VEVL D D+ G K + G + +K E+GVHR+ RV Sbjct: 145 AEMLYRMYNKWAQAHGMTVEVLDYQDGDEAGLKSASMMVKGANAYGLLKSENGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A++ V+PE I V+I EDI + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFASLEVMPELDNTIQVNIRPEDIEMQVYRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +++SQ QNR AM++L+A+LY + +++ ++ + + +I G Sbjct: 265 HKPTGIVVNCQTQRSQFQNRDYAMEMLKAKLYQIAKQQHMDKIDDIKGVQNEIAWG---H 321 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +IR+Y F + DHR N ++ V+ G ID+ I L A + A Sbjct: 322 QIRSYVFMPYTMVKDHRTNYETGNVDAVMDGDIDEFIFAYLKAASRGELQDA 373 >gi|28493402|ref|NP_787563.1| peptide chain release factor RF-1 [Tropheryma whipplei str. Twist] gi|28572487|ref|NP_789267.1| peptide chain release factor 1 [Tropheryma whipplei TW08/27] gi|28410619|emb|CAD67005.1| peptide chain release factor 1 [Tropheryma whipplei TW08/27] gi|28476443|gb|AAO44532.1| peptide chain release factor RF-1 [Tropheryma whipplei str. Twist] Length = 347 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 139/349 (39%), Positives = 191/349 (54%), Gaps = 15/349 (4%) Query: 7 KQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + I L + IE R+S S L+ Y+ +S + + + + + + Sbjct: 3 ETIDTLLREHSIIEDRLSRCDASPSEMKDLSLRYSKLSRVKAAYEEFQKISLDLSAAREL 62 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + + L LL +D +D + I+EI+ G GG+E+ Sbjct: 63 A---DDDPGFLVEIPVLTEKLSDAQARL----QSLLTRRDENDHRDVIMEIKGGEGGAES 115 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRMKFES 180 ALF DL RMY +A WKVE+LS S+N GGYK++ I GV+ +K+E Sbjct: 116 ALFAADLLRMYAYFADSNGWKVEILSYSENTLGGYKDVQLAIRKTPSSTHGVWELLKYEG 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVPATE+ GR+HTS V V PE +++I ++IRID R+SG GGQ VNT Sbjct: 176 GVHRVQRVPATESQGRIHTSTTGVLVFPEVDAPGEIEITNDEIRIDVFRSSGPGGQSVNT 235 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +EKSQ QNR AM++LRARL + + A RK QI Sbjct: 236 TDSAVRITHLPTGIVVSCQNEKSQIQNRESAMRILRARLIAKRQDEIEKTTHAARKSQIR 295 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DRSERIRTYNF + R+ DHR Y L+ VL G + +I + A Sbjct: 296 AMDRSERIRTYNFPENRVVDHRTGYKAYNLDQVLNGDVSQLIRSCIEAD 344 >gi|309791264|ref|ZP_07685795.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG6] gi|308226690|gb|EFO80387.1| hypothetical protein OSCT_1746 [Oscillochloris trichoides DG6] Length = 361 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + + +E R +E + ++ + +++ + + + L +I Sbjct: 19 DLATKQEQISSLEERAAEPDLWNDPRTAQGVMQQLTRLKDEVAQWTNLESQLISLDELID 78 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + +I + + LL DD+ + I+AG GG++A Sbjct: 79 LTEAEGDATLYTEIAAEVRAAQKEL--AQRELALLLSGPYDDRDAFVSIQAGMGGTDAQD 136 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMY R+A R + V ++ S D+ G K + G + ++ E+GVHR+ R Sbjct: 137 WADMMLRMYLRWAETRGYSVTIVDMSAGDEAGIKSATLELRGPYAYGNIRAEAGVHRLIR 196 Query: 188 VPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ TS A V V+PE + +V I ED+RID R+ G GGQ VNTTDSAVR+ Sbjct: 197 LSPFNAAHTRQTSFARVEVVPEVDDAPEVTIKPEDLRIDVFRSGGHGGQGVNTTDSAVRL 256 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QNR AM+VLR RL + E +R ER+ R + + Sbjct: 257 THLPTGIVVTCQNERSQLQNRETAMRVLRGRLLERELQRQLEERARLR-GEHRDAAFGSQ 315 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +RTY + DHR + VL G +D I L + Sbjct: 316 MRTYYLHPSTLVKDHRTEHETSNVYAVLDGQLDPFIEAYLRWN 358 >gi|120402908|ref|YP_952737.1| peptide chain release factor 2 [Mycobacterium vanbaalenii PYR-1] gi|166225112|sp|A1T6D1|RF2_MYCVP RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|119955726|gb|ABM12731.1| bacterial peptide chain release factor 2 (bRF-2) [Mycobacterium vanbaalenii PYR-1] Length = 368 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 162/349 (46%), Gaps = 13/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 + L+ R ++E S+ D + + + +S ++ ++ + +DL + Sbjct: 24 DVDGLRGRIEQLEKDASDPQLWDDQARAQKVTSDLSHAQGELRRIEELRGRLEDLPVLYE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + E+ + E L D++ ++ IR+G GG + Sbjct: 84 LAAEEGGSDEVAEADAELTKLREDIEAM-----EVRTLLSGEYDEREALVTIRSGAGGVD 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A K+ VEV +S ++ G K + + + E G HR Sbjct: 139 AADWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPYAYGNLSVEQGTHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R TS A V VLP ++IP D+R+D R+SG GGQ VNTTDSA Sbjct: 199 LVRISPFDNQNRRQTSFADVEVLPVTETTDHIEIPEGDVRVDVYRSSGPGGQSVNTTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 259 VRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLERKRLEERAEMDAL-KGDGGS-SW 316 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 317 GNQMRSYVLHPYQMVKDLRTEYEVGNPSAVLDGDIDGFLEAGIRWRNRK 365 >gi|331090528|ref|ZP_08339381.1| peptide chain release factor 2 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405871|gb|EGG85399.1| peptide chain release factor 2 [Lachnospiraceae bacterium 2_1_46FAA] Length = 337 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 172/342 (50%), Gaps = 12/342 (3%) Query: 17 AEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E++ ++ E + K+ E + + ++ L ++ + N +S Sbjct: 2 EELQKKIEEPGFWEDTETSQKIMRELKGLQSFLENAESLLTSYEDIAMLIEMVYEDNDES 61 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + ++ + + I L D + I+ + AG GG+E+ + L+ Sbjct: 62 MVGEIRREIRQFEKNFEE-----IRINTLLSGPYDKDNAIVTLHAGAGGTESCDWASMLY 116 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + + + VL D D G K + ++G + ++ E GVHR+ R+ + Sbjct: 117 RMYSRWAERKGFSISVLDYLDGDITGIKTVTFEVNGENAYGYLQSEKGVHRLVRISPFNS 176 Query: 194 SGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ TS A+ V EID++I +D+++DT RASG+GGQHVN T SA+RITH+PTG Sbjct: 177 AGKRQTSFASCDVIPDIEDEIDIEINEDDLKVDTYRASGAGGQHVNKTSSAIRITHLPTG 236 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I+V +E+SQH NR +AM++L+A+LY ++++ A++ S R ++ +IR+Y Sbjct: 237 IVVQCQNERSQHSNREKAMQMLKAKLYLIKQQEQADKVSDIR-GEVKEIGFGNQIRSYVM 295 Query: 312 SQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 + DHR N+ + VL G I+ IN L + Sbjct: 296 QPYTLVKDHRTNVENGNVTAVLDGDIEPFINAYLKKRNEDEM 337 >gi|149184652|ref|ZP_01862970.1| protein chain release factor B [Erythrobacter sp. SD-21] gi|148831972|gb|EDL50405.1| protein chain release factor B [Erythrobacter sp. SD-21] Length = 375 Score = 213 bits (541), Expect = 4e-53, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 167/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E++ R+ + D +T+E + I+ + + + + + + Sbjct: 30 RRLDELDARVQDPTLWDDPKQAQAITQEQKRLETAINTVREIESEMGDAMEFVEMGEAEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + ++ R L D +EI AG GG+E+ + Sbjct: 90 DDDVVNEGLTSLSTLADRADR-----DKVQALLSGEADGNDSYIEIHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 LFRMY R+A R +KVE + D G K + G + K ESGVHR+ R+ Sbjct: 145 MLFRMYGRWAERRGFKVETVEYQAGDQAGIKSATLLLKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P +ID++I D++IDT RASG+GGQHVNTTDSAVRITH Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDDIDIEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHQ 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+N+ AM +L+ARL++ E S K IG G +I Sbjct: 265 PTGIVVASQNDRSQHKNKATAMNMLKARLFEREMAEREAAASGEYQEKSDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R +T + VL G +D I+ L Sbjct: 322 RSYVLQPYQMVKDLRTGVTSPTPDDVLDGALDPFISAALAQR 363 >gi|213692886|ref|YP_002323472.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213524347|gb|ACJ53094.1| peptide chain release factor 2 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320459060|dbj|BAJ69681.1| peptide chain release factor [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 374 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 106/355 (29%), Positives = 171/355 (48%), Gaps = 11/355 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I LK ++E + + D + + +S S++ + Q D+ T++ Sbjct: 25 DINRLKADIKDLETQAAAPGLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +DIP DIR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDIPDTDIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I+ I + + + +E Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 373 >gi|191637822|ref|YP_001986988.1| Peptide chain release factor 2 (RF-2) [Lactobacillus casei BL23] gi|190712124|emb|CAQ66130.1| Peptide chain release factor 2 (RF-2) [Lactobacillus casei BL23] Length = 332 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 104/335 (31%), Positives = 164/335 (48%), Gaps = 12/335 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M+E D + + + K + + E +DL ++ D ++ Sbjct: 1 MAEPGFWDDSEAAQKVIDNNNALKEKHDRFYALENELEDLEAGFELLQDEPDKDLQQEEE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 EK + LL D + ILEI G GG+E+ + L RMY+R+ Sbjct: 61 AKIKDLQEKLDK-----YEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +KVEV D+ G K + I+G + +K E GVHR+ R+ +++GR HT Sbjct: 116 ADQNGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE I+VD+ EDI+++ R+SG+GGQH+N T SAVR+ H+PTGI+ + Sbjct: 176 SFASVDVMPELDNSIEVDLRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +++SQ QN+ AM +L+A+LY E + + A + Q +IR+Y F + Sbjct: 236 AQRSQFQNKATAMAMLKAKLYQREEEAKRAKAKAIQGEQ-KDVAFGSQIRSYVFHPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR N V+ G ++ IN L A+ Sbjct: 295 KDHRTNYETGNGNAVMDGDLNPFINAYLQWELAQK 329 >gi|312898633|ref|ZP_07758023.1| peptide chain release factor 2 [Megasphaera micronuciformis F0359] gi|310620552|gb|EFQ04122.1| peptide chain release factor 2 [Megasphaera micronuciformis F0359] Length = 338 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 100/330 (30%), Positives = 167/330 (50%), Gaps = 12/330 (3%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 RMS+ ++ +++E + + + + +L+ + + S ++ Sbjct: 2 RMSDPDFWNSPDTAKAVSQEATKLKEEVQGHDDLVNEAADLSELYDLAAEDEDTSFTGEI 61 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + +++ + LLL D + I+ AG GG+EA + + RMY R Sbjct: 62 ERQYYRLVKELEK-----REVLLLLSGEYDSCNAIMAFHAGAGGTEAQDWTQMIVRMYSR 116 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A + + ++ D+ G K T+ G + +K E GVHR+ R+ + +GR H Sbjct: 117 WAEQHGYTIRMIDYQPGDEAGTKSCAFTVEGENAYGYLKSEKGVHRLVRISPFDTNGRRH 176 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS V V+PE + +V+I ++D+R+D RASG+GGQHVN T SAVR+THIPTGI+V Sbjct: 177 TSFTAVDVMPELPDDAEVEINMDDVRVDYFRASGAGGQHVNKTSSAVRMTHIPTGIVVQC 236 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-R 315 +E+SQ QNR MK LRA+L+++E ++ R+ Q S + +IR+Y F Sbjct: 237 QNERSQIQNREMCMKYLRAKLFELEEEKKEKLRAELTGTQ-QSIEWGSQIRSYVFHPYNL 295 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR + ++ V+ G ID I L Sbjct: 296 VKDHRTGVETSNIQSVMDGNIDMFIEGYLQ 325 >gi|306835540|ref|ZP_07468554.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC 49726] gi|304568597|gb|EFM44148.1| peptide chain release factor RF2 [Corynebacterium accolens ATCC 49726] Length = 370 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 157/344 (45%), Gaps = 10/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L R E+E + + D + + +S +K+ + + D+ + Sbjct: 29 EALAARIRELEAQAGDPSLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELA 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E+ + + D + ++ IR+G GG +AA + Sbjct: 89 EE-----EGTVSVADEDLAELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWA 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV++ S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 144 EMLMRMYTRWAGKHDHKVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLS 203 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP +D+P ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 204 PFDNQGRRQTSFAEVEVLPVVEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 264 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 321 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y + + D R N + VL G ID + + + Sbjct: 322 SYVLHPYQMVKDLRTNFEMGDPSKVLDGDIDGFLEAGIRWRMQQ 365 >gi|153952316|ref|YP_001398744.1| peptide chain release factor 2 [Campylobacter jejuni subsp. doylei 269.97] gi|166223625|sp|A7H5G4|RF2_CAMJD RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|152939762|gb|ABS44503.1| peptide chain release factor 2 [Campylobacter jejuni subsp. doylei 269.97] Length = 365 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 105/344 (30%), Positives = 187/344 (54%), Gaps = 8/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R EIE + + + + I + + Y+ D + Sbjct: 27 KNIQTRLKEIEELENSPSFWNDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 NS+++I L + ++ + + +L +D K+ I+ I G GG+E+ + Sbjct: 87 NSENDIETLQALFND--APKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 145 SILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTS 204 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 PTGI+V +++SQH+N+ A K+L++RLY++E + + +++ K +IG G +IR Sbjct: 265 FPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANSSEKSEIGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 322 SYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|303229877|ref|ZP_07316653.1| peptide chain release factor 2 [Veillonella atypica ACS-134-V-Col7a] gi|303232076|ref|ZP_07318779.1| peptide chain release factor 2 [Veillonella atypica ACS-049-V-Sch6] gi|302513182|gb|EFL55221.1| peptide chain release factor 2 [Veillonella atypica ACS-049-V-Sch6] gi|302515433|gb|EFL57399.1| peptide chain release factor 2 [Veillonella atypica ACS-134-V-Col7a] Length = 330 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 111/334 (33%), Positives = 175/334 (52%), Gaps = 18/334 (5%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 MS+ D K E + + + + Y Q + +D ++ D+ + + Sbjct: 1 MSDPTFWDNPDKAREISQEATQLKNSVEGYKQLVSDIEDASVMLDMAIEEEDTSMEGEIK 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 V I++ + + E LLL D + IL AG GG+EA + L RMY R+A Sbjct: 61 QFVNGIQEAVEKQEV----LLLLGGEYDQNNAILTFHAGAGGTEAQDWCSMLIRMYLRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + VE++ D+ G K I G F +K E GVHR+ R+ +A+ R HTS Sbjct: 117 EKTGFSVELMDEQPGDEAGIKSATFLIKGENAFGYLKSEKGVHRLVRISPFDAAARRHTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A V V+PE + +++I ++D+++DT RASG+GGQH+N TDSAVR+TH PTGI+V S Sbjct: 177 FAAVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQS 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS----GDRSERIRTYNFSQG 314 ++SQ QNR +A+++LRA+L+++E ++ A K QIG + +IR+Y F Sbjct: 237 QRSQMQNREQALRLLRAKLFELELEKQAEL-----KEQIGGTYQAIEWGSQIRSYVFHPY 291 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR ++ ++ V+ G ID I L Sbjct: 292 NMVKDHRTSVETGNVQAVMDGNIDQFIEGYLKKE 325 >gi|289423341|ref|ZP_06425149.1| peptide chain release factor 2 [Peptostreptococcus anaerobius 653-L] gi|289156272|gb|EFD04929.1| peptide chain release factor 2 [Peptostreptococcus anaerobius 653-L] Length = 350 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 116/348 (33%), Positives = 180/348 (51%), Gaps = 10/348 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R A+I M + + + SKI YD + +D+ +I Sbjct: 5 DLDSLKTRQADINASMEDQGFWEDSDHANRILQENKQLTSKIEDYDSLVGQLEDISVLIE 64 Query: 68 --DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + SDSE + +++A ++ E LL D + IL I +GTGG +A Sbjct: 65 MAEETSDSEEDKTIEDQLVAYISDVNEKIVNTTMELLFSGEYDSNNAILSINSGTGGLDA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R++ R KV++L + + G K +SG + +K E GVHR+ Sbjct: 125 QDWAQMLLRMYIRWSEGRGLKVKLLDIISDPEAGIKTASLMVSGVNAYGYLKSEKGVHRL 184 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SG+ HTS A+V VLPE + D++I D++IDT R+SG+GGQHVNTTDSAV Sbjct: 185 VRISPFDSSGKRHTSFASVDVLPEIEDDSDININPNDLKIDTYRSSGAGGQHVNTTDSAV 244 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGD 301 RITH+PTGI+V +E+SQ N+ AMK+L ++L ++ + + + QI G Sbjct: 245 RITHLPTGIVVQCQNERSQRINKDVAMKMLISKLIQIKEEENKEKIEDLQGKYTQISWG- 303 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y F + + DHR N ++ V+ G +DD + L Sbjct: 304 --SQIRSYVFQPYKLVKDHRTNKENTNVDAVMDGSLDDFMFEYLKKQN 349 >gi|220932479|ref|YP_002509387.1| bacterial peptide chain release factor 2 (bRF-2) [Halothermothrix orenii H 168] gi|219993789|gb|ACL70392.1| bacterial peptide chain release factor 2 (bRF-2) [Halothermothrix orenii H 168] Length = 331 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 114/328 (34%), Positives = 169/328 (51%), Gaps = 9/328 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ D K E + +I + + ++ +I D R+ E Sbjct: 1 MSDPGLWDDNKKAREITRKSKVVKDRIKSLKKLDELREEAEVMIELAEEDETNRE-LWSE 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V + E +++ DD + IL I G GG+E+ + L RMY R+A Sbjct: 60 VEDYINSLEEKIDKMELKFRLNGEYDDCNAILSIHPGAGGTESQDWADMLLRMYVRWAES 119 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVE L D+ G K + ISG + +K E GVHR+ R+ ++SGR HTS A Sbjct: 120 HGYKVETLDYLPGDEAGIKRVTLLISGEYSYGYLKGEKGVHRLVRISPFDSSGRRHTSFA 179 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + D++I+T RASG+GGQHVN TDSAVRITHIPTGI+V +E+ Sbjct: 180 SVNVIPEIDDDIEVDIDTGDLKIETYRASGAGGQHVNKTDSAVRITHIPTGIVVQCQNER 239 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RIT 317 SQH+N+ AM +L+ARL +++++ A + R +I G+ +IR+Y F I Sbjct: 240 SQHKNKKMAMMILKARLLELKKEARAEKIEELRGENKEIAWGN---QIRSYVFHPYNLIK 296 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR L ++ V+ GYID+ I L Sbjct: 297 DHRTGLEEGNVQKVMDGYIDEFIEAYLK 324 >gi|134097701|ref|YP_001103362.1| putative peptide chain release factor 2 [Saccharopolyspora erythraea NRRL 2338] gi|291006339|ref|ZP_06564312.1| putative peptide chain release factor 2 [Saccharopolyspora erythraea NRRL 2338] gi|166225115|sp|A4F8R2|RF2_SACEN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|133910324|emb|CAM00437.1| putative peptide chain release factor 2 [Saccharopolyspora erythraea NRRL 2338] Length = 367 Score = 213 bits (541), Expect = 5e-53, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 165/349 (47%), Gaps = 14/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI---SPIISKISIYDQKKQEEQDLHT 64 + L+ + AE+E + D + + + KI Q+ ++ + L+ Sbjct: 24 DLDALRAKIAELEEEAARPDLWDDVEHAQRVSSQLVHRQSELRKIKDLRQRVEDLEVLYE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D DS + + + + L D + ++ IRA GG + Sbjct: 84 LSEDEGDDSGLAEADSERTKLKKDLEA-----LEVRTLLSGDYDQREAVVTIRAEAGGVD 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA F L RMY R+A ++ VEV +S ++ G K ++ + + E G HR Sbjct: 139 AADFAEMLMRMYVRWAERHEYPVEVYDTSYAEEAGLKSATFRVNAPYAYGTLSVEQGTHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V VLP V+IP +DIR+D R+SG GGQ VNTTDSA Sbjct: 199 LVRISPFDNQGRRQTSFAGVEVLPVVEETDHVEIPEKDIRVDVFRSSGPGGQSVNTTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPTGI+V +EKSQ QN+ A++VL+++L ++++ E A + G+ Sbjct: 259 VRITHIPTGIVVSCQNEKSQLQNKAAALRVLQSKLLAKKKEQERAELDALKDSGSSWGN- 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + + VL G ID + + + + Sbjct: 318 --QMRSYVLHPYQMVKDLRTEFEVGNPDAVLDGQIDGFLEAGIRWRRQQ 364 >gi|255323494|ref|ZP_05364625.1| peptide chain release factor 2 [Campylobacter showae RM3277] gi|255299531|gb|EET78817.1| peptide chain release factor 2 [Campylobacter showae RM3277] Length = 366 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 181/343 (52%), Gaps = 8/343 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +K R EIE ++ K + I + ++ + K D + Sbjct: 27 ESIKARLKEIEEMENDQNFWQDIAKAGAIGKEKTKISNILNNFLNAKSAVDDAKELYELA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 NS+++ + + A E+ + + +L DD K+ I+ I G GG+E+ + Sbjct: 87 NSEND--EETINSLFAEADELEDKIVNLEISMLLSGEDDGKNAIVTIHPGAGGTESNDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 145 SMLYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFIVKGVNAYGYLKAENGIHRLVRTS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS +V V P +I+++I +D++IDT RA G+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFTSVMVSPEIDDDIEIEIDEKDLKIDTYRAGGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 PTGI+V +++SQH+N+ AMK+L++RLY++E + + K +IG G +IR Sbjct: 265 APTGIVVQCQNDRSQHKNKATAMKMLKSRLYELELMKQQEAAGSIEKSEIGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +Y F ++ D+R + + +L G I +I +L + ++ Sbjct: 322 SYVLFPYQQVKDNRSGEAYSQTDAILDGDIKKLIEGVLVSQKS 364 >gi|300781771|ref|ZP_07091625.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC 33030] gi|300533478|gb|EFK54539.1| peptide chain release factor RF2 [Corynebacterium genitalium ATCC 33030] Length = 364 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 10/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ R E+E + ++ D +S + +++ +Q DL + Sbjct: 24 DLDEMDARARELEQQAADPSLWDDPEHAQSVTTELSSVQARVRRVRSLRQRIDDLPVMYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + D + ++ IR+G GG +AA Sbjct: 84 LAAEEGDYTLAEDELADLTTAV-----ETLEVTTMLSGEYDQREAVVNIRSGAGGVDAAD 138 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV+V S ++ G K + G ++ ++ E G HR+ R Sbjct: 139 WAEMLMRMYIRWAEKNGHKVDVYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +DIP +IRID R+SG GGQ VNTTDSAVRI Sbjct: 199 ISPFDNQGRRQTSFAEVEVLPVVEKTDHIDIPDSEIRIDVYRSSGPGGQSVNTTDSAVRI 258 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +EKSQ QN+ AM VL+++L + +R+ E A G+ + Sbjct: 259 THEPTGIVVTCQNEKSQIQNKASAMNVLQSKLLERKRQEEKAELDAL--GAGGNASWGNQ 316 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R N + + VL G ID + + + Sbjct: 317 MRSYVLHPYQMVKDLRTNYEVGDPQKVLDGDIDGFLESGIRWRSTE 362 >gi|148243347|ref|YP_001228504.1| peptide chain release factor 2 [Synechococcus sp. RCC307] gi|147851657|emb|CAK29151.1| Protein chain release factor B [Synechococcus sp. RCC307] Length = 349 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 96/342 (28%), Positives = 166/342 (48%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ D ++ + + +++ + D + Sbjct: 1 DVPALTARQQDLEQLAAQPDFWDDQNNARKQMRQLDDVKAQLEQLRTWRASVDDAAATLE 60 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E D E +E+R + L T D + ++ I AG GG++A Sbjct: 61 LY--DLEPDDALLEEANGGLQELRLALDRWELERLLSGTYDQEGAVISINAGAGGTDAQD 118 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R KV V S+ ++ G K + GR + ++ E G HR+ R Sbjct: 119 WALMLMRMYTRWAEDRGMKVTVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVR 178 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E+D++IP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 179 ISPFNANDKRQTSFAGVEVMPKLEEEVDLEIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 238 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L+++L + +++ A E + R I + Sbjct: 239 LHIPTGLAVRCTQERSQLQNKEKAMALLKSKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 297 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R N ++ V+ G +D I LL Sbjct: 298 IRNYVFHPYQMVKDLRTNEETTDVQGVMDGDLDPFIQSLLRQ 339 >gi|257867488|ref|ZP_05647141.1| peptide chain release factor 2 [Enterococcus casseliflavus EC30] gi|257873817|ref|ZP_05653470.1| peptide chain release factor 2 [Enterococcus casseliflavus EC10] gi|257801544|gb|EEV30474.1| peptide chain release factor 2 [Enterococcus casseliflavus EC30] gi|257807981|gb|EEV36803.1| peptide chain release factor 2 [Enterococcus casseliflavus EC10] Length = 329 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 174/328 (53%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D K + A + ++Q +E ++L ++ +++ A++E Sbjct: 1 MAHPTFWDDSEKAQQVINANNANKETYDQFNQLAEELEELEVMLEMIQEEADPEMEAELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + +L + D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 ARITKLNEKM--ASYELSMLLDEPYDRNNAIIELHPGAGGTESQDWGSMLLRMYTRFCEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++VE L D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 119 HGYQVETLDYQAGDEAGIKSVTLLVKGHNAYGYLKSEKGVHRLVRISPFDSAKRRHTSFC 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE IDV+I +D++IDT RASG+GGQH+N T+SAVRITHIPTG +V + +++ Sbjct: 179 SVDVMPELDGAIDVEINSDDLKIDTYRASGAGGQHINKTESAVRITHIPTGTVVASQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR +AM +L+A+LY +E ++ E +A R Q IG G +IR+Y F + Sbjct: 239 SQLKNREQAMGMLKAKLYQLEVEKKEQEAAALRGEQLEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N ++ V+ G +D I+ L Sbjct: 296 DHRTNFETGNVQAVMDGDLDGFIDAYLK 323 >gi|284046044|ref|YP_003396384.1| peptide chain release factor 2 [Conexibacter woesei DSM 14684] gi|283950265|gb|ADB53009.1| peptide chain release factor 2 [Conexibacter woesei DSM 14684] Length = 372 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 100/344 (29%), Positives = 163/344 (47%), Gaps = 8/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ AE+E M D+ K + A + K+ Y + +DL + Sbjct: 34 KALEAHVAELEQEMGAPGFWDSQEKAAKTSAEHARASRKLDTYRTLVSDVEDLEPLAEMA 93 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D E+ ++ + E+ + ++ L D ++ + AG GG++A + Sbjct: 94 QEDPELEAELAEQIASAERRLE----QLEEERLFSGRYDGGDALVTVNAGAGGTDAQDWA 149 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 + RM R+A R + VE+L S ++ G K + G + E GVHR+ R+ Sbjct: 150 EMVLRMEMRWAEKRGFDVELLEVSAGEEAGIKSATFRVKGENAYGLYGAEKGVHRLVRLS 209 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R TS A V V +V+I +D+++DT RASG+GGQHVN TDSAVRITH Sbjct: 210 PFDSANRRQTSFAGVEVAPVVEDAAEVEIDDDDLQVDTYRASGAGGQHVNKTDSAVRITH 269 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 P+GI+V +E+SQ NR AM +LR++L ++E +R E + K + + +IR Sbjct: 270 RPSGIVVQCQNERSQSSNRATAMAMLRSKLVELEERRRQEEIAKE-KGEAQDVNFGSQIR 328 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y + DHR + VL G +D + L A+ Sbjct: 329 SYVLHPYSMVKDHRTEFEIGDTGRVLDGDLDGFVRAYLLQAAAR 372 >gi|239618275|ref|YP_002941597.1| peptide chain release factor 2 [Kosmotoga olearia TBF 19.5.1] gi|259585228|sp|C5CGS4|RF2_KOSOT RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|239507106|gb|ACR80593.1| peptide chain release factor 2 [Kosmotoga olearia TBF 19.5.1] Length = 370 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 106/339 (31%), Positives = 180/339 (53%), Gaps = 12/339 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +K + + IE +S+ + + + S++ + ++ ++ +++ + Sbjct: 25 DVDKIKEKLSRIEKELSDPSVWSDQRRAGKLGQQAQALRSQLDLLNKVQELFENIDIAVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + E ++E E I D + L + G GG+E+ Sbjct: 85 LSEEDESYLENLNELLKEAEDMVKEFELNIL----LSSPYDAYNAYLSVHPGAGGTESQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A +KV + ++ G K I+G + ++K+E+GVHR+ R Sbjct: 141 WASMLLRMYIRWAERNNYKVTTIEEQPGEEAGIKSATINIAGPYAYGKLKYEAGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS A+V+V PE + ++DI ED++IDT RA G+GGQHVN T+SAVRI Sbjct: 201 ISPFDANHRRHTSFASVSVFPEMDDDVEIDIRPEDLKIDTYRAGGAGGQHVNRTESAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 THIPTGI+V +E+SQHQN+ AMK+L+A+L+++E ++ E+ + I G+ Sbjct: 261 THIPTGIVVTCQNERSQHQNKATAMKILKAKLFELELEKKRQEKMKLMGEQKDIAWGN-- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIIN 341 +IR+Y F + DHR N ++ V+ GYIDD I Sbjct: 319 -QIRSYVFQPYTMVKDHRTNYETGDVQAVMDGYIDDFIE 356 >gi|195952400|ref|YP_002120690.1| peptide chain release factor 2 [Hydrogenobaculum sp. Y04AAS1] gi|195932012|gb|ACG56712.1| peptide chain release factor 2 [Hydrogenobaculum sp. Y04AAS1] Length = 375 Score = 212 bits (540), Expect = 5e-53, Method: Composition-based stats. Identities = 116/367 (31%), Positives = 190/367 (51%), Gaps = 33/367 (8%) Query: 11 DLKNRFAEIE----------------LRMSESPSVDAYIK---LTEEYAAISPIISKISI 51 D+K RF E+ MSE K ++++ A+ ++ + Sbjct: 10 DIKKRFEELSSSIDEEKIKKEIEKYDQMMSEPDFWSDQEKAKSISQKRKALQDKLNTYTS 69 Query: 52 YDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKS 111 + ++ ++ + + + + D+ + ++E + + + ELE D D + Sbjct: 70 LKSRIKDLDEMVSELKEEDLDTTLLISEELEAVEKDLKKFELE------TYLSDEMDINN 123 Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 L I+AG GG+EA + L RMY R+A ++V++ + +D G K I G Sbjct: 124 AYLTIQAGAGGTEACDWASMLLRMYTRWAEKHGYEVQLTDINPDDVAGIKSATLYIKGPY 183 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRAS 230 + +K E+GVHR+ R+ +A+ R HTS A+V V+PE E +++I ED+RIDT RAS Sbjct: 184 AYGYLKSENGVHRLVRISPFDANARRHTSFASVLVVPEVNEDVNIEIKEEDLRIDTYRAS 243 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQ+VN TD+AVRITHIPTGI+V E+SQ QNR +AM++L+ARLY +E +++ ++ Sbjct: 244 GAGGQYVNKTDTAVRITHIPTGIVVACQQERSQIQNRRKAMEMLKARLYQLELQKIEEKK 303 Query: 290 SANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y F + + D R +E V+ G ID+ I L Sbjct: 304 KSLEGPKTDIGWG---YKIRSYIFQPSQLVKDLRTGEESGNIEAVMDGEIDNFIEAYLRK 360 Query: 347 HQAKMIG 353 + Sbjct: 361 KALNQLS 367 >gi|307718929|ref|YP_003874461.1| peptide chain release factor 2 [Spirochaeta thermophila DSM 6192] gi|306532654|gb|ADN02188.1| peptide chain release factor 2 [Spirochaeta thermophila DSM 6192] Length = 361 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 110/349 (31%), Positives = 176/349 (50%), Gaps = 11/349 (3%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +K + + +E + E + + + + + QE +D+HT+ Sbjct: 16 SIKEQISRLEEETGRPDLWNDRKHAEEVLSRLRRLKVRYEGWASLVQEVEDIHTLYDLAA 75 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +++ ++ E E + E + L + D K L I AG GG EA + Sbjct: 76 EENDPSQEEELRQQLAEAERKFRELRLREL--LNEEYDQKDAYLTIHAGAGGMEACDWAS 133 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ + + +++ D+GG K + + G F +K E+GVHR+ R+ Sbjct: 134 MLLRMYLRWLERKGFSTQIVDM-VEDEGGIKSVTVEVKGDYAFGYLKGEAGVHRLVRISP 192 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +ASGR HTS A+V V P + +VDI ED+RIDT R+ G+GGQHVN T+SAVRITH+ Sbjct: 193 FDASGRRHTSFASVYVSPIIEDDIEVDIRPEDLRIDTYRSQGAGGQHVNKTESAVRITHL 252 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK--RMANERSANRKLQIGSGDRSERI 306 PTGI+V +E+SQH+NR AM++LR+RLY+ ++ E+ A K I G+ +I Sbjct: 253 PTGIVVQCQNERSQHKNREIAMRMLRSRLYEYYQQLREEEQEKKAIEKKDISWGN---QI 309 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+Y F + D R + ++ V+ G +D I L + + Sbjct: 310 RSYVFQPYTMVKDLRTRVETGNIQAVMDGDLDMFIEAYLLQQWKERQEA 358 >gi|223940442|ref|ZP_03632294.1| peptide chain release factor 2 [bacterium Ellin514] gi|223890887|gb|EEF57396.1| peptide chain release factor 2 [bacterium Ellin514] Length = 384 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 172/345 (49%), Gaps = 9/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +++ R E++ M+ + + + + K+ + +++ +D +I Sbjct: 28 DVANVQKRLGELDSLMAGESFWSNRDQAQKLIDESNSLRKKVEPLLKAEKQLEDYKVMIE 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP-KDTDDDKSCILEIRAGTGGSEAA 126 ++ + E + E E L + D +CIL I AG GG+E+ Sbjct: 88 LAEAEPAAEQEKYQNDVDRELVVFNKELENLELKVFLNGPHDKNNCILSINAGAGGTESC 147 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY+R+A LR W+VEV + + G K ISG + K E GVHR+ Sbjct: 148 DWANMLLRMYQRWAELRGWQVEVTDALPGETAGIKSATLLISGENAYGFCKAERGVHRLV 207 Query: 187 RVPATEASGRVHTSAATVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS A+V + E ++ IP + +DT R+ G GGQ+VN ++AVR Sbjct: 208 RISPFDSNKRRHTSFASVDAIAEIEEEGEIAIPPNEFHVDTFRSGGKGGQNVNKVETAVR 267 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDR 302 ITHIPTG++V + +++SQHQNR AMK+L +R++ ++ ER K + G+ Sbjct: 268 ITHIPTGLVVASQTQRSQHQNRATAMKLLLSRIFAQRLDAQKQEMERFYGEKGSVSWGN- 326 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F R + D R + ++ V+ G +D +N L A Sbjct: 327 --QIRSYVFQPYRMVKDLRTGVETSDVQGVMDGDLDPYVNGWLRA 369 >gi|315606122|ref|ZP_07881153.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180 str. F0310] gi|315312404|gb|EFU60490.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 180 str. F0310] Length = 372 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 166/348 (47%), Gaps = 5/348 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ + AE+ + + D E +A+S S++ Q + DL ++ Sbjct: 26 DKLREQIAELNEKAAAPDLWDDPSAAQEVTSALSHRQSELDRITQMSERIDDLEAMVEMA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + E +++R+ ++ L D+++ ++ IR+G GG +AA F Sbjct: 86 AEDPDEGAEILAEAEGDLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +V+ +S ++ G K + + + E+G HR+ R+ Sbjct: 146 EILLRMYLRWAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRIS 205 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++IP ++++D R+SG GGQ VNTTDSAVR+TH Sbjct: 206 PFDNQGRRQTSFAAVEVIPLIETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTH 265 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V+ EKSQ QNR A++VL++RL + + ++ S +++R Sbjct: 266 IPTGIVVSMQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAKKKELAGDVKAS--WGDQMR 323 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +Y + + D R + V G ID IN + + + + Sbjct: 324 SYVLQPYQMVKDLRTEFESGNPQSVFDGDIDGFINAGIRWRKNEQNAA 371 >gi|305679674|ref|ZP_07402484.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC 14266] gi|305660294|gb|EFM49791.1| peptide chain release factor 2 [Corynebacterium matruchotii ATCC 14266] Length = 368 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 164/345 (47%), Gaps = 9/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 DL +R E+ + ++ D + + +S + ++ + DL + Sbjct: 26 ADLSDRARELAAKAADPSLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E D+A E+ + +I LE D + ++ IR+G GG +AA + Sbjct: 86 EEEGEGTDIADEELTDLRADIDALEVTTM----LSGEYDSREALINIRSGAGGVDAADWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + KVEV S ++ G K + G ++ + E GVHR+ R+ Sbjct: 142 EMLMRMYIRWAEKQGRKVEVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRIS 201 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + R TS A V VLP +DIP ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 202 PFDNQARRQTSFAEVEVLPVVEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ A++VL+A+L + +R+ E A G+ ++R Sbjct: 262 IPTGIVVTCQNEKSQIQNKASALRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 319 Query: 308 TYNFSQ-GRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 Y + D R + + VL G +D + + + + Sbjct: 320 NYVLHPFQMVKDLRTGFEVGDPQKVLDGDLDKFLEAGIRWRKGQH 364 >gi|160902329|ref|YP_001567910.1| peptide chain release factor 2 [Petrotoga mobilis SJ95] gi|189040002|sp|A9BHH8|RF2_PETMO RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|160359973|gb|ABX31587.1| peptide chain release factor 2 [Petrotoga mobilis SJ95] Length = 366 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 179/336 (53%), Gaps = 8/336 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I ++ +++ M E + + + + +I + + + + ++L + Sbjct: 26 IDKVEEEVKKLDKEMMEPNFWNDQNRAKKISKMAQNLKDEIDEFKKLENDFEELEIAVEL 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + +V AI K I + +L + DD + L + G GG+E+ + Sbjct: 86 SEDDPSM----TAQVEAILKVIEKKIGSFRLRMLLSEEYDDANAFLSLHPGAGGTESQDW 141 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + +E + + D+ G K ISG + ++K+ESGVHR+ R+ Sbjct: 142 ASMLLRMYTRWADKNNYDIETIDFQEGDEAGIKSATIKISGPYAYGKLKYESGVHRLVRI 201 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+GR HTS A+++V+PE E +++I +D++IDT R+ G+GGQHVN TDSAVRIT Sbjct: 202 SPFDANGRRHTSFASISVMPEFDENVEIEINPDDLKIDTYRSGGAGGQHVNKTDSAVRIT 261 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQHQN+ A+K+L+A+LY++E ++ E+ R ++ +I Sbjct: 262 HLPTGIVVAVQNERSQHQNKATALKILKAKLYELEHQKKLEEKLRLR-GEVKDISWGNQI 320 Query: 307 RTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 R+Y + + D R + VL G ID+ I Sbjct: 321 RSYVLYPYTLVKDLRTEYETSNAQAVLDGEIDEFIE 356 >gi|255083621|ref|XP_002508385.1| predicted protein [Micromonas sp. RCC299] gi|226523662|gb|ACO69643.1| predicted protein [Micromonas sp. RCC299] Length = 366 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 157/362 (43%), Positives = 236/362 (65%), Gaps = 6/362 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSE--SPSVDAYIKLTEEYAAISPIISKISIYDQKKQE 58 M +++ + R + + P ++ +E A ++ + +++ E Sbjct: 1 MTPALERRLEAVSARHDALVAALVADPPPRAAEIARINKELARAERVVRAYAAVKERRHE 60 Query: 59 EQDLHTVIGDHNS-DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L VI + D+E+ +A+ E+ +E+ LE + +LLLP D DD ILE+R Sbjct: 61 TASLEQVIAESAGVDAEMAQMAEDELATLEETTPALEETLAHLLLPADEADDSGVILEVR 120 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EAALF DL RMYE +A W+ E+++++ ++ GG KE A+++G V+ R+K Sbjct: 121 AGAGGDEAALFAADLLRMYEMFARKTGWRFELVAANASEAGGVKEATASLAGDDVYGRLK 180 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 FESGVHRVQRVPATE GRVHTS A+VAVLP+A +++DI +D++IDTMRASG+GGQHV Sbjct: 181 FESGVHRVQRVPATETQGRVHTSTASVAVLPQAETVELDIRDDDLKIDTMRASGAGGQHV 240 Query: 238 NTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTT+SAVRITH+PTG +V E+SQH+N+ +AMKVLRAR+Y++ER+++A+ R+ R+ Sbjct: 241 NTTNSAVRITHVPTGVTVVMQDERSQHKNKEKAMKVLRARVYELERRKLADARADQRRSL 300 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 IGSGDRSER+RTYN+ +GR+ DHR+NL L L +L G + +++ L + +++ Sbjct: 301 IGSGDRSERVRTYNYKEGRVKDHRVNLLLNDLPGLLDGGDALTQMLDALKLEERRQLMAE 360 Query: 355 AS 356 S Sbjct: 361 FS 362 >gi|224438340|ref|ZP_03659267.1| peptide chain release factor 2 [Helicobacter cinaedi CCUG 18818] gi|313144782|ref|ZP_07806975.1| peptide chain release factor 2 [Helicobacter cinaedi CCUG 18818] gi|313129813|gb|EFR47430.1| peptide chain release factor 2 [Helicobacter cinaedi CCUG 18818] Length = 365 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 118/341 (34%), Positives = 190/341 (55%), Gaps = 14/341 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L+ R EI S + K +T+E I+S + + + ++L + Sbjct: 27 DSLQKRMDEINALESHQEFWNDAKKAGEITKEKRKCERILSTYTEMKAELDDAKELFEIA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + DS +L V +++ I+++E E+ D + I+ I+ G GG+E+ Sbjct: 87 -ESEGDSSTLELLFENVESLQSHIQKVEIEVM----LSGEFDSSNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R++ R +KVE+L D ++ G K I G + K E+GVHR+ Sbjct: 142 DWASMLYRMYLRWSERRGFKVELLDHQDGEEAGIKGAAFIIKGENAYGYAKSENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V V PE + +ID++I +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDANAKRHTSFASVQVSPELSEDIDIEILDKDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ AMK+L+++LY++ER + + + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKATAMKMLQSKLYELERLKQSEGVANAEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y + ++ D R N E VL G IDD+I +L Sbjct: 319 QIRSYVLAPYQQVKDLRSNYATSDTEGVLDGDIDDLIESVL 359 >gi|254445589|ref|ZP_05059065.1| peptide chain release factor 2 [Verrucomicrobiae bacterium DG1235] gi|198259897|gb|EDY84205.1| peptide chain release factor 2 [Verrucomicrobiae bacterium DG1235] Length = 368 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 171/347 (49%), Gaps = 13/347 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI---SPIISKISIYDQKKQEEQDLHT 64 + K E+E +MS + A +++ ++ + K + + + Sbjct: 13 DVDKKKTEIGELEAQMSAEGFWNDQKAAQAVIAQANLAKGVVNGMTAFMAKLDDARAMEE 72 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + D + +++ A+ + E D + +L + AG GG+E Sbjct: 73 LLNEEGVDELSDEAEELQAAAVALKEELDEL--EIQCYLNKPHDRCNALLSVNAGAGGTE 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L+RMY R+A R +KVEV+ ++ G ++ I G F E GVHR Sbjct: 131 SCDWAELLYRMYSRWAERRGFKVEVVDMLPGEEAGLDKVTLRIVGENAFGYANAERGVHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++ R HTS V V+ E + +D+R DT R+SG GGQHVN TDSA Sbjct: 191 LVRISPFDSQKRRHTSFCAVDVVAEIEDDIEIEIEAKDLREDTYRSSGKGGQHVNKTDSA 250 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVE--RKRMANERSANRKLQIGSG 300 VR+THIPTGI+ S++SQH+NR AMK+L+ARLY+ KR A E+ K +IG G Sbjct: 251 VRLTHIPTGIVAACQSDRSQHKNRSAAMKMLKARLYERMEDEKRSAMEKMYGEKGEIGWG 310 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + +IR+Y F + + D R + ++ V+ G ID ++ L A Sbjct: 311 N---QIRSYVFQPYQMVKDLRTGVETGNIQAVMDGDIDRFVSGWLRA 354 >gi|71043904|ref|NP_001020894.1| peptide chain release factor 1-like, mitochondrial precursor [Rattus norvegicus] gi|81907899|sp|Q4V7E5|RF1ML_RAT RecName: Full=Peptide chain release factor 1-like, mitochondrial; AltName: Full=Mitochondrial translational release factor 1-like; Flags: Precursor gi|66910900|gb|AAH97970.1| Mitochondrial translational release factor 1-like [Rattus norvegicus] Length = 373 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 145/315 (46%), Positives = 204/315 (64%), Gaps = 5/315 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + + + ++K++E +D +++ D N D ++ LA+ E+ +KEI EL++ I LL+P Sbjct: 56 QLAAAARLLNEKERELRDTESLLHDENED--LKKLAESEIALCQKEIAELKHRIISLLVP 113 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 114 SEDMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 173 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI + I +D+R Sbjct: 174 SASIGGPEAYRHMKFEGGVHRVQRVPKTERQGRIHTSTMTVAILPQPTEIKLVINPKDLR 233 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +NR AMK LRARLY + Sbjct: 234 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMRL 293 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + +R + RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +DD+I Sbjct: 294 EEETAKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDCLLDDLI 353 Query: 341 NPLLTAHQAKMIGSA 355 L + + Sbjct: 354 QSLKDYSDYESLVEM 368 >gi|30425080|ref|NP_780583.1| peptide chain release factor 1-like, mitochondrial precursor [Mus musculus] gi|81874010|sp|Q8BJU9|RF1ML_MOUSE RecName: Full=Peptide chain release factor 1-like, mitochondrial; AltName: Full=Mitochondrial translational release factor 1-like; Flags: Precursor gi|26347595|dbj|BAC37446.1| unnamed protein product [Mus musculus] gi|74186873|dbj|BAE20502.1| unnamed protein product [Mus musculus] gi|148671619|gb|EDL03566.1| mitochondrial translational release factor 1-like [Mus musculus] Length = 373 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 143/315 (45%), Positives = 203/315 (64%), Gaps = 5/315 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + + + +K++E +D +++ D N D ++ LA+ E+ +K+I EL+++I LL+P Sbjct: 56 QLAAAARLLSEKERELRDTESLLHDENED--LKKLAESEIALCQKQITELKHQIISLLVP 113 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 114 SEEMDGSDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 173 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A++ G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI + I +D+R Sbjct: 174 SASVGGPEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEIKLVINPKDLR 233 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +NR AMK LRARLY + Sbjct: 234 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIISECQQERSQLKNRELAMKKLRARLYSMHL 293 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + +R RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +DD+I Sbjct: 294 EEETAKRYNARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLESFMQGDCLLDDMI 353 Query: 341 NPLLTAHQAKMIGSA 355 L + + Sbjct: 354 QSLKDCSDYEALVEM 368 >gi|297626158|ref|YP_003687921.1| peptide chain release factor 2 (RF-2) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921923|emb|CBL56483.1| Peptide chain release factor 2 (RF-2) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 369 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 97/350 (27%), Positives = 156/350 (44%), Gaps = 8/350 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + E+E S + + +S + S + + D T++ Sbjct: 25 DVPAKNKQIEELETEASAPDLWNDQEHAQSVTSRLSRLQSSVEKVQTLRSRLDDASTLLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +S+ + E + + L D++ ++ IR+ GG +AA Sbjct: 85 LASEESDADTAQEAEKEIATLADEI--DTLEVQTLLSGEYDERDALVTIRSEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMYER+A + EV S ++ G K T+ + + E G HR+ R Sbjct: 143 FAAMLLRMYERWAERHAYSYEVYDISYAEEAGIKSATFTVKSPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++DIP +DIR+D ASG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEETDNIDIPEKDIRVDVFHASGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ ++VL+A+L + R+ E A + G + Sbjct: 263 THLPTGIVVTCQNERSQIQNKAAGLRVLQAKLLERARQEREAEMDALKSDGNSWG---SQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +R+Y + + D R + V G ID I + + + + Sbjct: 320 MRSYVLHPYQMVKDLRTGFESGSPDNVFDGDIDGFIERGIRWRRQEEQAA 369 >gi|157415680|ref|YP_001482936.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 81116] gi|172047182|sp|A8FNC2|RF2_CAMJ8 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157386644|gb|ABV52959.1| peptide chain release factor RF-2 [Campylobacter jejuni subsp. jejuni 81116] gi|307748321|gb|ADN91591.1| Peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni M1] gi|315930963|gb|EFV09938.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 327] Length = 365 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 185/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + +A K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|296118845|ref|ZP_06837421.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM 20306] gi|295968334|gb|EFG81583.1| peptide chain release factor 2 [Corynebacterium ammoniagenes DSM 20306] Length = 367 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 100/349 (28%), Positives = 163/349 (46%), Gaps = 14/349 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGD 68 ++ R E+E + + D + + +S +K+ + +DL + + + Sbjct: 27 AMEERVRELEAQAGDPSLWDDPDHAQKVTSELSSTQAKLRKLSALRGRLEDLPVMYELAE 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D+ + D V + + + D + ++ IR+G GG +AA + Sbjct: 87 EEGDASLADDELDAVRDAVETLE-------VTTMLSGDYDQREAVINIRSGAGGVDAADW 139 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A KV+V S ++ G K + G ++ + E G HR+ R+ Sbjct: 140 AEMLMRMYTRWAEKHGHKVDVYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAHRLVRL 199 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + R TS A V VLP ++IP ++R+D R+SG GGQ VNTTDSAVR+T Sbjct: 200 SPFDNQNRRQTSFAEVEVLPVVEQTDSIEIPDSEVRVDVYRSSGPGGQSVNTTDSAVRLT 259 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGIMV +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++ Sbjct: 260 HVPTGIMVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAEMDAL--GAGGNASWGNQM 317 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 R+Y + + D R N + VL G IDD + + A+ Sbjct: 318 RSYVLHPYQMVKDLRTNHEVGDPSKVLGGDIDDFLEAGIRWRMAEQTAQ 366 >gi|99035041|ref|ZP_01314835.1| hypothetical protein Wendoof_01000330 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 336 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 11/340 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E++ + S K E S I + + + + + + D +++ +++ Sbjct: 2 RLEELDSQASNDDLWQDNQKAQEVLKERSKIKNDVESFLKLESDYNDAISLMKSAIDEND 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + EV ++ +L L D+ +C LEI +G GG+E+ + L R Sbjct: 62 --EEFFSEVENELAKLEKLIKYKETESLFTGEADNNNCFLEIHSGAGGTESNDWAEMLMR 119 Query: 135 MYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY R+A +KVEV+ + + G K + I G + K ESG+HR+ R+ +A Sbjct: 120 MYIRWAEIYHNFKVEVVEKLEGESVGIKSAMIKIVGEKAYGWAKSESGIHRLVRISPFDA 179 Query: 194 SGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ HTS A+V V P + + +D++IDT RASG+GGQHVN T+SAVRITHIPTG Sbjct: 180 NGKRHTSFASVGVTPVIEDSIDIAVDEKDLKIDTYRASGAGGQHVNKTESAVRITHIPTG 239 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTY 309 ++V + +SQH+N+ A+K+L+ RLY +E ++ + + +K IG G+ +IR+Y Sbjct: 240 VVVQCQNGRSQHRNKDEALKLLKGRLYQIELEKKEQKMAEEYGKKCDIGWGN---QIRSY 296 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + D R + + V G ID I +LT Sbjct: 297 VMHPYQMVKDLRTGHEVGNINSVFDGNIDCFIVSVLTKQN 336 >gi|222148341|ref|YP_002549298.1| peptide chain release factor 2 [Agrobacterium vitis S4] gi|221735329|gb|ACM36292.1| peptide chain release factor 2 [Agrobacterium vitis S4] Length = 344 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 166/337 (49%), Gaps = 16/337 (4%) Query: 19 IELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 + + + + KL E + I+ + +Q+ ++ +L + + +S + Sbjct: 4 LNNKAEDPNLWNDAAEAQKLMRERQQLEDSIAGVRRLEQQMKDNIELIEMGEEEGDESIV 63 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 ++ + + + + D +E+ +G GG+E+ + L RM Sbjct: 64 KEAEDGLKALKAESGK-----LQVEAMLSGEADGNDTYVEVHSGAGGTESQDWANMLLRM 118 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A +KVE+L D ++ G K + G + MK ESGVHR+ R+ +++ Sbjct: 119 YTRWAERSGFKVELLEVHDGEEAGIKSATILVKGHNAYGWMKTESGVHRLVRISPYDSNA 178 Query: 196 RVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 R HTS +++ V P I +DI D RIDT R+SG+GGQHVNTTDSAVRITHIP+GI Sbjct: 179 RRHTSFSSIWVYPVVDDSIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPSGIA 238 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNF 311 V E+SQH+N+ +A +LRARLY+VE K+ A A K IG G +IR+Y Sbjct: 239 VSCQQERSQHKNKAKAWDMLRARLYEVELKKREEAANAEAASKTDIGWG---HQIRSYVL 295 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G I + L Sbjct: 296 QPYQLVKDLRTGVESTAPDDVLNGDISPFMEAALAHR 332 >gi|119960719|ref|YP_948373.1| peptide chain release factor 2 [Arthrobacter aurescens TC1] gi|119947578|gb|ABM06489.1| peptide chain release factor 2 [Arthrobacter aurescens TC1] Length = 398 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 164/352 (46%), Gaps = 7/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK AE+ + D + +S S++ + DL ++ Sbjct: 51 DVDALKTEIAELSEQAGAPDLWDDPASAQVITSRLSHRQSEVERLSKLASRIDDLEVLVE 110 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + +A+ E L D++ ++ IRAG GG +AA Sbjct: 111 LGQDEGDEDSMAEAAKELSSIRKALAEL--EITTLLSGEYDEREAVVTIRAGAGGVDAAD 168 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + V+ +S ++ G K + F + E+G HR+ R Sbjct: 169 FAEMLMRMYLRWAERHGYPTTVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVR 228 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P ++IP +IR+D R+SG GGQ VNTTDSAVR+ Sbjct: 229 ISPFDNQGRRQTSFAAVEVIPLIEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRL 288 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V+ +EKSQ QNR AM+VL++RL V++++ E+ A S ++ Sbjct: 289 THIPTGIVVSMQNEKSQLQNRAAAMRVLQSRLLLVKKEQQDAEKKALAGDVKAS--WGDQ 346 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +R+Y + + + D R + VL G IDD I+ + +A+ Sbjct: 347 MRSYVLNPYQMVKDLRTEHEVGNTSAVLDGDIDDFIDAGIRWRTGNRNAAAN 398 >gi|194476812|ref|YP_002048991.1| peptide chain release factor 2 [Paulinella chromatophora] gi|171191819|gb|ACB42781.1| peptide chain release factor 2 [Paulinella chromatophora] Length = 354 Score = 212 bits (540), Expect = 6e-53, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 166/342 (48%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R ++E S+ D + ++ + + ++ Q + D + Sbjct: 7 DVPALKARQQDLEQLASQPKFWDLQDQAQKQMRQLDEVREQLEKLRQWQGTIADAKATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +N + + + E + ++ + L T D ++ I AG GG++A Sbjct: 67 LYNIEPD--ESMLNEGNEGMQRLKNNLDRWELERLLNGTYDKGGAVISINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R++ KV + S+ ++ G K + I G + ++ E G HR+ R Sbjct: 125 WARMLLRMYTRWSEDHGMKVNICEISEGEEAGIKSVTFEIDGSYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ +ID+ IP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKLNEDIDMFIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R +I + Sbjct: 245 LHIPTGLAVRCTQERSQLQNKEKAMALLKAKLMVIAQEQRAAEIADIR-GEIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R N ++ V+ G +D I LL Sbjct: 304 IRNYVFHPYQMVKDLRTNKETTDVQGVMDGDLDLFIQALLRQ 345 >gi|323172435|gb|EFZ58072.1| peptide chain release factor 1 [Escherichia coli LT-68] Length = 227 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 129/225 (57%), Positives = 174/225 (77%), Gaps = 2/225 (0%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HRVQRVPATE+ Sbjct: 1 MYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQ 60 Query: 195 GRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI Sbjct: 61 GRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGI 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 +V E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDRS+R RTYNF Sbjct: 121 VVECQDERSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFP 180 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 QGR+TDHRINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 181 QGRVTDHRINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 225 >gi|148556746|ref|YP_001264328.1| peptide chain release factor 2 [Sphingomonas wittichii RW1] gi|148501936|gb|ABQ70190.1| bacterial peptide chain release factor 2 (bRF-2) [Sphingomonas wittichii RW1] Length = 375 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 175/342 (51%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D ++ E + +S + +Q++ + +L + + Sbjct: 30 RRLDELNNRVEDPKLWDDAKAAQEVMRERRRLDEAVSAVKAIEQERDDTIELIELAEAED 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + D Q E+ + L D + +E+ +G GG+E+ + G Sbjct: 90 DTALVDDGVQALAALAERAEK-----DKIGALLAGEADANNTYIEVNSGAGGTESQDWAG 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A +KVE++ + G K + G + K ESGVHR+ R+ Sbjct: 145 MLQRMYARWAERHGYKVELIDFHAGEQAGIKSATLLVRGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V PE +ID+++ +D++IDT R+SG+GGQHVNTTDSAVRITH+ Sbjct: 205 YDSAARRHTSFASVWVYPEVDDDIDIEVLEKDLKIDTYRSSGAGGQHVNTTDSAVRITHV 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERI 306 PTGI+V +++SQH+NR AMK L+ARLY+ E ++ E A K +IG G +I Sbjct: 265 PTGIIVACQNQRSQHKNRAEAMKQLKARLYEQELQKREAEAMAGYAAKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R T VL G +D + L+ Sbjct: 322 RSYVLQPYQMVKDLRTGTTSTAPSDVLDGDLDRFMAAALSQR 363 >gi|171741050|ref|ZP_02916857.1| hypothetical protein BIFDEN_00116 [Bifidobacterium dentium ATCC 27678] gi|283455565|ref|YP_003360129.1| peptide chain release factor 2 [Bifidobacterium dentium Bd1] gi|171276664|gb|EDT44325.1| hypothetical protein BIFDEN_00116 [Bifidobacterium dentium ATCC 27678] gi|283102199|gb|ADB09305.1| prfB Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium dentium Bd1] Length = 380 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 170/349 (48%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E+E++ +E D + + +S + S++ Q D+ T++ Sbjct: 29 DVDRLTAQAKELEVQAAEPGLWDDPENAQKITSKLSAVQSQLKRLSSASQRIDDVETLVE 88 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D++ + A+ E+ I ++ ++E + D++S ++ IR+G GG +A Sbjct: 89 LGREEEDADTLEEAKNEIEGIRHDLDDMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 144 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + RM E G HR+ Sbjct: 145 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRL 204 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +D+P +IR+DT +SG GGQ VNTT SAV Sbjct: 205 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDVPDSEIRVDTYCSSGPGGQGVNTTYSAV 264 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 265 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 322 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +++R+Y + + D R + + V G ID I + + Sbjct: 323 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDAFIEAGIRWRHEQR 371 >gi|283956828|ref|ZP_06374302.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 1336] gi|283791689|gb|EFC30484.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 1336] Length = 365 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 184/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 ++K R EIE + + + I + + Y+ D + + Sbjct: 27 ENIKTRLKEIEELENSPSFWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + + K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|58696790|ref|ZP_00372322.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila simulans] gi|58698424|ref|ZP_00373334.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila ananassae] gi|58698511|ref|ZP_00373415.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila ananassae] gi|225630212|ref|YP_002727003.1| Protein chain release factor B [Wolbachia sp. wRi] gi|58534979|gb|EAL59074.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila ananassae] gi|58535047|gb|EAL59136.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila ananassae] gi|58537012|gb|EAL60158.1| peptide chain release factor 2 [Wolbachia endosymbiont of Drosophila simulans] gi|225592193|gb|ACN95212.1| Protein chain release factor B [Wolbachia sp. wRi] Length = 336 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 105/340 (30%), Positives = 174/340 (51%), Gaps = 11/340 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E++ + S K E S I + + + + + + D +++ +++ Sbjct: 2 RLEELDSQASNDNLWQDNQKAQEILKERSKIKNDVESFLKLESDYNDAISLMKSAIDEND 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + EV ++ +L L D+ +C LEI +G GG+E+ + L R Sbjct: 62 --EEFFSEVENELAKLEKLIKYKETESLFTGEADNNNCFLEIHSGAGGTESNDWAEMLMR 119 Query: 135 MYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY R+A +KVEV+ + + G K + I G + K ESG+HR+ R+ +A Sbjct: 120 MYVRWAEIYHNFKVEVVEKLEGESVGIKSAMIKIVGEKAYGWAKSESGIHRLVRISPFDA 179 Query: 194 SGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ HTS A+V V P + + +D++IDT RASG+GGQHVN T+SAVRITHIPTG Sbjct: 180 NGKRHTSFASVGVTPVIEDSIDIAVDEKDLKIDTYRASGAGGQHVNKTESAVRITHIPTG 239 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTY 309 ++V + +SQH+N+ A+K+L+ RLY +E ++ + + +K IG G+ +IR+Y Sbjct: 240 VVVQCQNGRSQHRNKDEALKLLKGRLYQIELEKKEQKMAEEYGKKCDIGWGN---QIRSY 296 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + D R + + V G ID I +LT Sbjct: 297 VMHPYQMVKDLRTGHEVGNINSVFDGNIDCFIVSVLTKQN 336 >gi|290580262|ref|YP_003484654.1| putative peptide chain release factor [Streptococcus mutans NN2025] gi|254997161|dbj|BAH87762.1| putative peptide chain release factor [Streptococcus mutans NN2025] Length = 325 Score = 212 bits (539), Expect = 7e-53, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 179/332 (53%), Gaps = 12/332 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + K ++ ++ + + D D Q E Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKLKYETFNSMQELSDETELLQEMLEED----DSLQGE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ ++ LL + D + ILEI G+GG+EA + L RMY R+ Sbjct: 57 LEEDLVKLDKIMTSYEMTLLLSEPYDANNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KV+VL D+ G K + + G + +K E GVHR+ R+ +++ R HTS A Sbjct: 117 KGFKVDVLDYQAGDEAGIKSVALSFEGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI EDI++DT R+ G+GGQ+VN + VR+THIP+GI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPSGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 DHR N + +++ V+ G +D I+ L Sbjct: 294 DHRTNYEVSQVDRVMDGELDGFIDAFLKWRME 325 >gi|268679078|ref|YP_003303509.1| peptide chain release factor 2 [Sulfurospirillum deleyianum DSM 6946] gi|268617109|gb|ACZ11474.1| peptide chain release factor 2 [Sulfurospirillum deleyianum DSM 6946] Length = 364 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 190/345 (55%), Gaps = 14/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ R EIE + + + +E A++ ++++ + + DL+ + Sbjct: 27 EEIAKRLGEIEAIEQDPEFWNDAKRAAEMQKEKTALNSLLNRYTKAKNVVSDAVDLYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N ++ I + + + + + + ++ +D K+ I+ I G GG+E+ Sbjct: 87 NAENDETTIEE-----LFNDAQRVEDHITNLEIAMMLSGENDTKNAIVSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A +KVEVL + ++ G K++ ISG + +K E+G+HR+ Sbjct: 142 DWASILYRMYLRWAERSGFKVEVLDYQEGEEAGIKDVSFIISGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS ++V V PE + + D+++DT RASG+GGQHVN TDSA+R Sbjct: 202 RISPFDANAKRHTSFSSVMVSPEVDDDIDIVLEDRDLKVDTYRASGAGGQHVNKTDSAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+PTGI+V +++SQH+NR AMK+L++RLY++E ++ E+ K +IG G Sbjct: 262 ITHMPTGIVVQCQNDRSQHKNRASAMKMLKSRLYELELEKQQAEKDGIEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y + ++ D+R N+ ++ +L G I +I +L A + Sbjct: 319 QIRSYVLAPYQQVKDNRSNIAYSQVNAILDGDISKVIEDVLIAQK 363 >gi|297181318|gb|ADI17509.1| protein chain release factor b [uncultured bacterium HF0130_06E03] Length = 325 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 103/328 (31%), Positives = 163/328 (49%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ + I ++ + +DL + +D + + A + Sbjct: 1 MSDPSFWSDRKNAEKISKQARLFKESIEAWETLTSQHKDLCELQEMAAADGD--ESALSD 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E+ + + + DD K+ IL I +G GG+EAA + L RMY R+ Sbjct: 59 LENEVDELTKNVESFEFRSMLDGVDDSKNAILVIHSGAGGTEAADWAEMLLRMYNRWTER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 K +V+ ++ G K + +SG + +K E+GVHR+ R+ ++ GR HTS A Sbjct: 119 NGLKSKVMDIQPGEEAGIKGVTIEVSGEYAYGYLKAEAGVHRLVRISPFDSGGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V P+ +I+VD+ ED++I+ RA G+GGQHVN T SAVRITH+PTGI+V +E+ Sbjct: 179 SVFVYPDVDDDIEVDLKDEDLKIEVYRAGGAGGQHVNKTSSAVRITHVPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ +N+ A+KVL AR+Y + + + S D +IR+Y F + DH Sbjct: 239 SQFKNKATALKVLTARVYQNIKDEENKKLKEVENSK-KSIDFGSQIRSYVFHPYNLVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N ++ V+ G ID I LT Sbjct: 298 RTNYETGNVQAVMDGDIDKFIRAFLTLE 325 >gi|46580270|ref|YP_011078.1| peptide chain release factor 2, programmed frameshift [Desulfovibrio vulgaris str. Hildenborough] gi|46449687|gb|AAS96337.1| peptide chain release factor 2, programmed frameshift [Desulfovibrio vulgaris str. Hildenborough] gi|311233748|gb|ADP86602.1| hypothetical protein Deval_1446 [Desulfovibrio vulgaris RCH1] Length = 371 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 118/340 (34%), Positives = 184/340 (54%), Gaps = 16/340 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++R +EIE ++S + + KLT +E + + I+++ + + + + + + Sbjct: 31 RHRLSEIEKQLSTPDAWNNPEKLTPVLQEKSMLEGEINRLEALETCRNDVSEWLLLAEED 90 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S + L + +L E LL +D + +LEI G GG+EA + Sbjct: 91 ESAEALESLE-----EQIIRLEQLIEETEMNLLLSGKEDRFAALLEIHPGAGGTEAQDWA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A +K E L D D+ G K + I+G + +K E G+HR+ R+ Sbjct: 146 EMLLRMYLRWADTHGYKTEYLDYLDGDEAGIKSVTLRIAGPNAYGLLKGERGIHRLIRIS 205 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V V+P+ +I ++I D+RID R+SG GGQ VNTT SAVR+TH Sbjct: 206 PFDASGRRHTSFASVDVIPDVGQDIKIEIKDTDLRIDVFRSSGPGGQSVNTTSSAVRVTH 265 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSER 305 IPTGI+ +EKSQH N+ A+++LR RLY++E +++ E+ A K IG G + Sbjct: 266 IPTGIVAQCQNEKSQHHNKDSALQILRGRLYELELRKLEEEKKAQYGAKDAIGFG---SQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IRTY R + DHR N + +E VL G +D ++ L Sbjct: 323 IRTYTLQPYRLVKDHRTNTEVGDVEAVLDGRLDKLLRDYL 362 >gi|269218746|ref|ZP_06162600.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str. F0332] gi|269211857|gb|EEZ78197.1| peptide chain release factor 2 [Actinomyces sp. oral taxon 848 str. F0332] Length = 378 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 107/355 (30%), Positives = 167/355 (47%), Gaps = 9/355 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQDLHTVI 66 L+ R AE+ + D K + +S + KI+ + + L + Sbjct: 26 EGLRERIAELTEASAAPDLWDDQDKAQSVTSKLSHAQAELDKINAMSAALDDLETLKEMA 85 Query: 67 GDH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + SD E ++ ++ +E+ L D++ ++ IR+G GG +A Sbjct: 86 DEEAGSDPETAAELYSDLERELGQVGADMSELEIRTLLSGKYDEREAVVTIRSGAGGVDA 145 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R + +VL +S ++ G K +S + + E+G HR+ Sbjct: 146 ADFAQILQRMYLRWAERRGYSAKVLDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTHRL 205 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P +D+P DIR+D R+SG GGQ VNTTDSAV Sbjct: 206 VRISPFDNQGRRQTSFAAVEVIPLIEQTDHIDVPEADIRVDVFRSSGPGGQSVNTTDSAV 265 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V+ EKSQ QNR AM+VL++RL ++++ A E+ S Sbjct: 266 RITHIPTGIVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQEEEAREKKELAGDIKAS--WG 323 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R E V G ID I+ + + E Sbjct: 324 DQMRSYVLQPYQMVKDLRTGYEAGNPEAVFDGDIDGFIDAGIRWRATGVKAGEGE 378 >gi|115311854|sp|Q4L4H9|RF2_STAHJ RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 371 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 174/345 (50%), Gaps = 17/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVI 66 + + E E M+E D K + A+ +++ +++ ++ ++ Sbjct: 27 ENKETNIQEYEEMMTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELL 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + DL + +E ++ LL D + ILE+ G GG+E+ Sbjct: 87 QEELDGDVKSDLE-----QNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY+RY + +KVE + D+ G K + I G + +K E GVHR+ Sbjct: 142 DWASMLLRMYQRYGEQQGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS A+ V+PE +++I +DI +DT RASG+GGQH+N T+SA+ Sbjct: 202 RISPFDSSGRRHTSFASCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAI 261 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGD 301 RITH PTGI+V +E+SQ +NR AMK+L+A+LY ++ + E + R Q IG G Sbjct: 262 RITHHPTGIVVNNQNERSQIKNREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWG- 320 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N K++ V+ G I I L Sbjct: 321 --SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGEIGPFIESYLR 363 >gi|297679452|ref|XP_002817544.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like isoform 1 [Pongo abelii] Length = 380 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 208/314 (66%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG ++ Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRQA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE ++G +D+++ Sbjct: 301 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMRGDYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKEYADYESLVE 374 >gi|294791755|ref|ZP_06756903.1| peptide chain release factor 2 [Veillonella sp. 6_1_27] gi|294793616|ref|ZP_06758753.1| peptide chain release factor 2 [Veillonella sp. 3_1_44] gi|294455186|gb|EFG23558.1| peptide chain release factor 2 [Veillonella sp. 3_1_44] gi|294456985|gb|EFG25347.1| peptide chain release factor 2 [Veillonella sp. 6_1_27] Length = 330 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 174/332 (52%), Gaps = 14/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ D K E + + + + Y Q + +D + ++ + D + + Sbjct: 1 MSDPTFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANMML-EMAIDEDDLSMESEI 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +++ LE LLL D + IL AG GG+EA + L RMY R+A Sbjct: 60 KEYVKQIEETLEK-QEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +E++ D+ G K + G F +K E GVHR+ R+ +A+ R HTS A Sbjct: 119 SGFSIELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 V V+PE + +++I ++D+++DT RASG+GGQH+N TDSAVR+TH PTGI+V +++ Sbjct: 179 AVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQTQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS----GDRSERIRTYNFSQG-R 315 SQ QNR +A+++LRA+L+++E ++ A K QIG + +IR+Y F Sbjct: 239 SQMQNREQALRLLRAKLFELELEKQAEL-----KEQIGGTYQAIEWGSQIRSYVFHPYNL 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR ++ ++ V+ G +D I L Sbjct: 294 VKDHRTSVETGNVQAVMDGNLDPFIEGFLKKE 325 >gi|227502940|ref|ZP_03932989.1| peptide chain release factor 2 [Corynebacterium accolens ATCC 49725] gi|227076362|gb|EEI14325.1| peptide chain release factor 2 [Corynebacterium accolens ATCC 49725] Length = 367 Score = 212 bits (539), Expect = 8e-53, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 157/344 (45%), Gaps = 10/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L R E+E + + D + + +S +K+ + + D+ + Sbjct: 26 EALAARIRELEAQAGDPSLWDDPEHAQKVTSELSSAQAKVRKLESLRGRLDDMPVMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E+ + + D + ++ IR+G GG +AA + Sbjct: 86 EE-----EGTVSVADEDLAELESAIESLEVTTMLSGEYDPREAVINIRSGAGGVDAADWA 140 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A KV++ S ++ G K + G ++ ++ E G HR+ R+ Sbjct: 141 EMLMRMYTRWAGKHDHKVDIYDISYAEEAGIKSATFVVHGEYMYGQLSVEQGAHRLVRLS 200 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP +D+P ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 201 PFDNQGRRQTSFAEVEVLPVVEQTDHIDVPDNEVRVDVYRSSGPGGQSVNTTDSAVRLTH 260 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ ++R Sbjct: 261 IPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 318 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y + + D R N + VL G ID + + + Sbjct: 319 SYVLHPYQMVKDLRTNFEMGDPSKVLDGDIDGFLEAGIRWRMQQ 362 >gi|260904322|ref|ZP_05912644.1| peptide chain release factor 2 [Brevibacterium linens BL2] Length = 372 Score = 211 bits (538), Expect = 8e-53, Method: Composition-based stats. Identities = 102/357 (28%), Positives = 169/357 (47%), Gaps = 7/357 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L + +L++ AE+ + S D + A +S + ++ + D Sbjct: 20 LDVSDLDNLRSEVAEMTEQASAPSFWDDPDSAQKISATLSHKQGTLEKLEKFGERIDDAE 79 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + + + E + + E L D++S ++ +R+G GG Sbjct: 80 LIIEMSEDEGDEDSKVEAERDLKKLHDQLAEL--EISTLLNHEYDERSAVVTVRSGAGGD 137 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+A R + V+ L +S + G K ++ + + E+G H Sbjct: 138 DATDWAQMLIRMYVRWAENRGYNVQQLDTSYAEGAGIKSATIQVNAPYAYGTLSVEAGTH 197 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V V+P + V+I D+RID R+SG GGQ VNTTDS Sbjct: 198 RLVRISPFDNQGRRQTSFAAVEVVPLIESTDHVEIDENDLRIDVYRSSGPGGQSVNTTDS 257 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTG++V+ +EKSQ QNR AM+VL++RL D++RK A E+ S Sbjct: 258 AVRITHAPTGVVVSMQNEKSQIQNREAAMRVLQSRLLDLKRKEEAAEKKELAGDIKAS-- 315 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + V G +D +I + + + + SE Sbjct: 316 WGDQMRSYVTHPYQMVKDLRTGYEVNNPSNVFDGDLDGLIEAGIRWRKEQEMAEESE 372 >gi|227494927|ref|ZP_03925243.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436] gi|226831379|gb|EEH63762.1| peptide chain release factor RF2 [Actinomyces coleocanis DSM 15436] Length = 372 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 106/350 (30%), Positives = 173/350 (49%), Gaps = 9/350 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +LK R AE+ + + D + +S +++ ++ + DL T++ Sbjct: 26 DELKARIAELSEKAAVPDLWDNPEAAQAVTSELSHTQAELGRIEKMVERIDDLETIVEMA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + +DL E A IR+ ++ L D++S ++ IRAG GG +AA F Sbjct: 86 EEDLDEKDLLLEEAEADLAGIRQALADLEIKTLLSGEYDERSAVVTIRAGAGGVDAADFA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +V+ +S ++ G K ++ + + E+G HR+ R+ Sbjct: 146 EMLLRMYLRWAERNGYPTKVMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLVRIS 205 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++IP +++ID R+SG GGQ VNTTDSAVR+TH Sbjct: 206 PFDNQGRRQTSFAAVEVIPLIETTDHIEIPESELKIDVFRSSGPGGQSVNTTDSAVRMTH 265 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSER 305 IPTGI+V+ +EKSQ QNR A++VL++RL + + E A +K G ++ Sbjct: 266 IPTGIVVSMQNEKSQIQNRAAALRVLQSRLLQLRHE----EEQAAKKALAGDVKASWGDQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +R+Y + + D R + V G IDD IN + + + Sbjct: 322 MRSYVLQPYQMVKDLRTSHENGNTGAVFDGEIDDFINAGIRWRKDQAQEE 371 >gi|197302438|ref|ZP_03167493.1| hypothetical protein RUMLAC_01166 [Ruminococcus lactaris ATCC 29176] gi|197298336|gb|EDY32881.1| hypothetical protein RUMLAC_01166 [Ruminococcus lactaris ATCC 29176] Length = 339 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 97/335 (28%), Positives = 173/335 (51%), Gaps = 5/335 (1%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E R+ E D + + + + ++ + +D+ ++ D ++ + + Sbjct: 2 EKRLEEPGFWDNPEVSQQVMKELKGLQDSVKEIEKLYTDYEDML-LLIDMSAGEDEEEET 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 EV ++ + ++ L D + I+ + AG GG+EA + G L+RMY R+ Sbjct: 61 AEEVAEELQQFEAVFEQLRISTLLIGPYDRDNAIVTLHAGAGGTEAMDWTGMLYRMYSRW 120 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +++EVL + D G K + + G + ++ E GVHR+ R+ A+G+ T Sbjct: 121 AEKKGYELEVLDYLEGDVAGIKGVTFEVKGENAYGYLRSEKGVHRLVRISPFNAAGKRQT 180 Query: 200 SAATVAVLPEAAEIDVDIPLED-IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+ V+P+ E ED +RIDT R+SG+GGQH+N T SA+RITH+PTGI+V Sbjct: 181 SFASCDVIPDIEEDIDIEINEDELRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQ 240 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ +AM++L+++L ++++ A + S R ++ + +IR+Y + Sbjct: 241 NERSQHMNKDKAMQMLKSKLLLLKQQEQAEKMSDIR-GEVSDINFGNQIRSYVMQPYTMV 299 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR N + + V+ G ID IN L+ Sbjct: 300 KDHRTNAEISNVGAVMDGNIDPFINAYLSMDAEAQ 334 >gi|88809865|ref|ZP_01125371.1| peptide chain release factor 2 [Synechococcus sp. WH 7805] gi|88786249|gb|EAR17410.1| peptide chain release factor 2 [Synechococcus sp. WH 7805] Length = 356 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 94/342 (27%), Positives = 163/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ D ++ + + + + + + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWDDQQNAQKQMRRLDEVKAMLQQLETWQGAVSDAQATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E + E ++R + L D + +L I AG GG++A Sbjct: 67 LY--DLEPDEDMLGEAQGGLNQLRRDLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDRGMKVTVDELSEGEEAGIKSATIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ ++D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 245 LHIPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G ++ I LL Sbjct: 304 IRNYVFHPYQMVKDLRTQEETNDVQGVMDGDLEPFIQALLRQ 345 >gi|303327864|ref|ZP_07358304.1| peptide chain release factor 2 [Desulfovibrio sp. 3_1_syn3] gi|302862225|gb|EFL85159.1| peptide chain release factor 2 [Desulfovibrio sp. 3_1_syn3] Length = 366 Score = 211 bits (538), Expect = 9e-53, Method: Composition-based stats. Identities = 119/347 (34%), Positives = 181/347 (52%), Gaps = 16/347 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + R +IE +S + D LT +E + + +++ + + ++ + ++ Sbjct: 27 EQRLRDIETELSRPGAWDKPEALTPVLQEKRRLEDEVGRLTRLKTCRDDMEEWLVLASEN 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + L +KE+ L +E ++L +D + ILEI G GG+E+ + Sbjct: 87 EDQEALESLE-----QQQKELAALLDETELVMLLSAEEDGQDAILEIHPGAGGTESQDWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L R+Y R+AA RK+ VE + D+ G K + ISG F +K E G+HR+ R+ Sbjct: 142 EMLLRLYTRWAARRKYAVEEMDFLPGDEAGIKSVTLRISGPHAFGFLKSERGIHRLIRIS 201 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +ASGR HTS A+V V+P+A +I +DI D+R D R+SG GGQ VNTT SAVR+TH Sbjct: 202 PFDASGRRHTSFASVDVIPDAGNDIQLDIKESDLRFDIFRSSGPGGQSVNTTSSAVRVTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 +PTGI +EKSQH N+ A++VLRARLY++E ++ ER A K I G + Sbjct: 262 LPTGISAQCQNEKSQHHNKETALRVLRARLYNLELQKREAERQAEYAGKDAIAFG---SQ 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IRTY R + DHR ++ VL G ID + L + Sbjct: 319 IRTYTLQPYRLVKDHRTGSESGDVDAVLDGQIDQFQHDYLLYRHEQQ 365 >gi|301786516|ref|XP_002928673.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Ailuropoda melanoleuca] Length = 380 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 208/315 (66%), Gaps = 5/315 (1%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 S +++ + +K+QE Q+ ++ D N D +R LA+ E+ + +KEI +L+++I LL+ Sbjct: 62 SELLAAAKLLSEKEQELQETEHLLHDENED--LRKLAENEITSCQKEITQLKHQIILLLV 119 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 P + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 120 PSEETDANDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSEIGGLRH 179 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 A+I G + MKFE GVHRVQRVP TE GR+HTS TVAVLP+ EI++ I +D+ Sbjct: 180 ASASIGGLEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAVLPQPTEINLVINPKDL 239 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVE 281 RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR AMK LRA+LY + Sbjct: 240 RIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMY 299 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDI 339 + ++R + RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +D++ Sbjct: 300 LEEETSKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLLDEL 359 Query: 340 INPLLTAHQAKMIGS 354 + L + + Sbjct: 360 VQSLKDYADYESLVE 374 >gi|163942871|ref|YP_001647755.1| peptide chain release factor 2 [Bacillus weihenstephanensis KBAB4] gi|229014346|ref|ZP_04171465.1| Peptide chain release factor 2 [Bacillus mycoides DSM 2048] gi|229063835|ref|ZP_04200139.1| Peptide chain release factor 2 [Bacillus cereus AH603] gi|229135993|ref|ZP_04264753.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST196] gi|229169892|ref|ZP_04297588.1| Peptide chain release factor 2 [Bacillus cereus AH621] gi|163865068|gb|ABY46127.1| peptide chain release factor 2 [Bacillus weihenstephanensis KBAB4] gi|228613606|gb|EEK70735.1| Peptide chain release factor 2 [Bacillus cereus AH621] gi|228647451|gb|EEL03526.1| Peptide chain release factor 2 [Bacillus cereus BDRD-ST196] gi|228716472|gb|EEL68176.1| Peptide chain release factor 2 [Bacillus cereus AH603] gi|228746946|gb|EEL96830.1| Peptide chain release factor 2 [Bacillus mycoides DSM 2048] Length = 326 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 169/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ + D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQAVINEANALKDMVGRFRQLDETFENLEMTHDLLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKTLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R++KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRRFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++++ ED++IDT RASG+GGQHVNTTDSAVRITH+PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEVRTEDLKIDTYRASGAGGQHVNTTDSAVRITHLPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 SE+SQ +NR AMK+L+A+LY + + + R Q IG G +IR+Y F Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAQLDEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N + ++ V+ G I+ I+ L + Sbjct: 293 LVKDHRTNTEVGNVQAVMDGEINPFIDAYLRSR 325 >gi|256832101|ref|YP_003160828.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603] gi|256685632|gb|ACV08525.1| peptide chain release factor 2 [Jonesia denitrificans DSM 20603] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 111/348 (31%), Positives = 172/348 (49%), Gaps = 15/348 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L + AE+ + S D + + +A+S +++ + +Q DL ++ Sbjct: 26 EALTAKIAELSDQASAPDLWDDPAQAQQVTSALSLAQNELKRIESMQQRIDDLEVLVEMA 85 Query: 69 -HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +D++ A+ E AI+K++ +LE L D + ++ IRAG GG +AA Sbjct: 86 VEGNDADTLHEAEDEYAAIKKDLDQLEV----RTLLSGEYDAREAVVTIRAGAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + VL +S ++ G K + F + E+G HR+ R Sbjct: 142 FAEMLLRMYLRWAERHGYPTAVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P V+IP +IR+D R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAAVEVVPLIEQTDHVEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRL 261 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 THIPTGI+V+ +EKSQ QNR AM+VL++RL E A +K G Sbjct: 262 THIPTGIVVSMQNEKSQIQNRAAAMRVLQSRLLL----ERQAEEKAKKKELAGDIKASWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + + D R + V G+IDD I + ++K Sbjct: 318 DQMRSYVLQPYQMVKDLRTEHEVGNTNAVFDGHIDDFIEAGIRWRRSK 365 >gi|169832218|ref|YP_001718200.1| peptide chain release factor 2 [Candidatus Desulforudis audaxviator MP104C] gi|169639062|gb|ACA60568.1| peptide chain release factor 2 [Candidatus Desulforudis audaxviator MP104C] Length = 330 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 119/337 (35%), Positives = 176/337 (52%), Gaps = 12/337 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + E ++ + ++ ++D +++ +D ++ + ++E Sbjct: 1 METPDFWQQQERAQEVTRRLAGLRQQVEVFDTLRRDFEDAAVLLELGEEIEDPDTAREVE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E R E+ LL + + IL + AG GG EA +V LFRMY R+A Sbjct: 61 RSLAELGRRVAALELELLLSGPYDEA--NAILSLHAGAGGLEAQDWVEMLFRMYLRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R + VEVL +D+ G K + +SG + ++ E GVHR+ R+ +A GR HTS A Sbjct: 119 RGYAVEVLDILPDDEAGLKNVTFLVSGPMAYGYLRAEKGVHRLVRISPFDAGGRRHTSFA 178 Query: 203 TVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ VLPE AE +DI ED+RIDT R+ G+GGQHVN TDSAVRITH+PTGI+V +E+ Sbjct: 179 SLDVLPEVAENTAIDINPEDLRIDTYRSGGAGGQHVNKTDSAVRITHLPTGIVVSCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ NR AMK+L+ARL D+E +R E +A R Q I G +IR+Y F + Sbjct: 239 SQIANRNAAMKLLKARLLDLELRRREEEIAALRGEQPDIAWG---SQIRSYVFHPYSMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 DHR ++ V+ G ID+ I L + Sbjct: 296 DHRTKFEKGNVDAVMDGEIDEFIQAYLVW--KARLKE 330 >gi|331089985|ref|ZP_08338875.1| peptide chain release factor 2 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402899|gb|EGG82465.1| peptide chain release factor 2 [Lachnospiraceae bacterium 3_1_46FAA] Length = 332 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 98/331 (29%), Positives = 171/331 (51%), Gaps = 6/331 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D + + + + ++ + +D+ +I + +IE Sbjct: 1 MEEPGFWDDPEVSQQVMKELKGLQDSVKEIEKLYSDYEDMMLLIEMSEEEDSEETAEEIE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E E I L D + I+ + AG GG+E+ + G L+RMY R+A Sbjct: 61 EELQQFEETFEELRIGTL--LTGPYDRDNAIVTLHAGAGGTESCDWTGMLYRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +E L + D G K + + G + ++ E GVHR+ R+ ++G+ TS A Sbjct: 119 KGYSIEELDYLEGDVAGVKGVTFEVKGENAYGYLRSEKGVHRLVRISPFNSAGKRQTSFA 178 Query: 203 TVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V +ID++I +D++IDT R+SG+GGQH+N T SAVRITH+PTGI+V +E+ Sbjct: 179 SCDVIPDIEEDIDIEINDDDLKIDTYRSSGAGGQHINKTSSAVRITHLPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +AM++L+++LY ++++ A + S R ++ + +IR+Y + DH Sbjct: 239 SQHMNKDKAMQMLKSKLYLMKQQEQAEKMSDIR-GEVRDINFGNQIRSYVMQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R N + + V+ G ID IN L+A+ + Sbjct: 298 RTNAEVSNVGGVMDGNIDPFINAYLSANTEQ 328 >gi|170782441|ref|YP_001710774.1| chain release factor 2 [Clavibacter michiganensis subsp. sepedonicus] gi|169157010|emb|CAQ02182.1| chain release factor 2 [Clavibacter michiganensis subsp. sepedonicus] Length = 367 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 174/346 (50%), Gaps = 13/346 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ E+ + E D K + + +S S++ D+ ++ DL ++ Sbjct: 26 VERLQQEVEELSAQAGEPDLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDVLVEM 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E + A +E+ I K + ELE + D + ++ IRAG GG +AA F Sbjct: 86 AKDDEESAEEAVVELAGITKIMDELEVQTL----LNGEFDPRPAVVTIRAGAGGVDAADF 141 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + VL +S ++ G K I F + E+G HR+ R+ Sbjct: 142 AEMLMRMYLRWAEQHDYSATVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRM 201 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++G+ TS A V V+P ++IP D+R+D R+SG GGQ VNTTDSAVRIT Sbjct: 202 SPFNSAGKRQTSFAAVEVVPLIEQTESIEIPENDMRVDVFRSSGPGGQSVNTTDSAVRIT 261 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG--SGDRSE 304 H+PTGI+V +EKSQ QNR A++VL++RL V+R+ + +A +K G + + Sbjct: 262 HLPTGIVVTCQNEKSQIQNRAAALRVLQSRLLLVQRE----QEAATKKELAGNITASWGD 317 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 ++R+Y + + + D R + V G +D I+ + ++ Sbjct: 318 QMRSYVLAPYQMVKDLRTEHEVNNPSNVFDGDLDGFISAGIRWRKS 363 >gi|150865313|ref|XP_001384475.2| hypothetical protein PICST_58482 [Scheffersomyces stipitis CBS 6054] gi|149386569|gb|ABN66446.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 376 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 132/364 (36%), Positives = 202/364 (55%), Gaps = 13/364 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ +K F +E +MS +L+ +++ +S I+ Y ++L Sbjct: 8 LLLERAEVMKQEFDLVEEKMSSGDF---DQELSIKFSNLSVILENYEKYTSDLSTFEELK 64 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++I + N D E + A E + + + + LLP DK ILE+R G GGS Sbjct: 65 SIIVEPNQDPEFLEEAISEANVTIPHLEKSISTLQSRLLPPMKFSDKPAILEMRPGVGGS 124 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA+LF GDL +MY +A +WK ++S S+ + G E++ +I G ++ ++ ESGVH Sbjct: 125 EASLFAGDLMQMYINFANHMRWKYTIVSKSEGNGGFVNEVIMSIDTPGSYNVLRHESGVH 184 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQ 235 RVQR+P+TE+ GR+HTS A + VLP+ E + ++RIDTMRA G GGQ Sbjct: 185 RVQRIPSTESKGRIHTSTAAIVVLPKMSDGNESSLKEDERQFAPGEVRIDTMRAGGKGGQ 244 Query: 236 HVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVR+ HIPTG+ V + +SQ +N+ +A +LRARL +ER + E+ R Sbjct: 245 HVNTTDSAVRLVHIPTGVTVMQQDERSQPKNKAKAFSILRARLAALERDKEFAEQRKMRT 304 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIG 353 Q+ + DRS++IRTYN+ Q R+TDHR +L+ L + G + DII + + Sbjct: 305 DQVTTTDRSDKIRTYNYPQNRVTDHRCGFSLHDLTGCMAGNRLMDIIEKVEEHEFESRLR 364 Query: 354 SASE 357 E Sbjct: 365 DLIE 368 >gi|33866841|ref|NP_898400.1| peptide chain release factor 2 [Synechococcus sp. WH 8102] gi|81573750|sp|Q7U3W6|RF2_SYNPX RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|33639442|emb|CAE08826.1| peptide chain release factor RF-2 [Synechococcus sp. WH 8102] Length = 374 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 90/342 (26%), Positives = 161/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R ++E ++ D ++ + + +++ D + Sbjct: 25 DVPALKARQQDLEQLAAQPDFWDDQQAAQKQMRRLDEVKAQLQQLADWGGAVDDAKATLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + L + + + + L D + +L I AG GG++A Sbjct: 85 LYELEPDEEMLTEAQEGLNQLRQGL--DRWELERLLSGDYDKEGAVLTINAGAGGTDAQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K + GR + ++ E G HR+ R Sbjct: 143 WAQMLLRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEVEGRYAYGYLRNEKGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A + V+P+ E D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 203 ISPFNANDKRQTSFAGIEVMPKIDEEVDIDIPEKDLEVTTSRSGGAGGQNVNKVETAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 263 LHIPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 321 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R + ++ V+ G +D I+ L Sbjct: 322 IRNYVFHPYQMVKDLRTSEETNDVQAVMDGALDPFIDASLRQ 363 >gi|84502908|ref|ZP_01001021.1| peptide chain release factor 2 [Oceanicola batsensis HTCC2597] gi|84388891|gb|EAQ01761.1| peptide chain release factor 2 [Oceanicola batsensis HTCC2597] Length = 374 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 124/349 (35%), Positives = 176/349 (50%), Gaps = 8/349 (2%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++R E R+ + D K ++ I+++D +QE D +I + Sbjct: 29 QHRLEEFNARVEDPNLWDDPEKAQALMKDRQALVDSIAVHDSIRQELSDNAELIELGEME 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + +A+ E + R E E+ LL + + LEI AG GG+EA + L Sbjct: 89 DDQEVVAEAETALRALKERAAEKELEALLNGEADSN--DTFLEINAGAGGTEACDWAQML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R +KVE+ S + G K I+G + +K ESGVHR+ R+ Sbjct: 147 QRMYVRWAEKRGYKVELQSEEPGAEAGIKSCAYKITGHNAYGWLKSESGVHRLVRISPFG 206 Query: 193 ASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 G TS A+V V P ID+D+ DIRIDT R+SG+GGQHVNTTDSAVRITH PT Sbjct: 207 K-GTRETSFASVWVYPVVDDNIDIDVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHHPT 265 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E R + + + GS +IR+Y Sbjct: 266 GIVVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNAAINEAHENK-GSAGWGNQIRSYVL 324 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA--KMIGSASE 357 + + D R + VL G +D + L + +A+E Sbjct: 325 QPYQMVKDLRTEHETSDTQGVLDGNLDGFMAATLAMDVSGKSRAEAAAE 373 >gi|281345517|gb|EFB21101.1| hypothetical protein PANDA_018665 [Ailuropoda melanoleuca] Length = 379 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 144/315 (45%), Positives = 208/315 (66%), Gaps = 5/315 (1%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 S +++ + +K+QE Q+ ++ D N D +R LA+ E+ + +KEI +L+++I LL+ Sbjct: 62 SELLAAAKLLSEKEQELQETEHLLHDENED--LRKLAENEITSCQKEITQLKHQIILLLV 119 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 P + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 120 PSEETDANDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLEYFPSEIGGLRH 179 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 A+I G + MKFE GVHRVQRVP TE GR+HTS TVAVLP+ EI++ I +D+ Sbjct: 180 ASASIGGLEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAVLPQPTEINLVINPKDL 239 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVE 281 RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR AMK LRA+LY + Sbjct: 240 RIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMY 299 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDI 339 + ++R + RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +D++ Sbjct: 300 LEEETSKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLLDEL 359 Query: 340 INPLLTAHQAKMIGS 354 + L + + Sbjct: 360 VQSLKDYADYESLVE 374 >gi|227497420|ref|ZP_03927652.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM 15434] gi|226833096|gb|EEH65479.1| peptide chain release factor RF2 [Actinomyces urogenitalis DSM 15434] Length = 374 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 99/351 (28%), Positives = 162/351 (46%), Gaps = 10/351 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVI 66 L+ R AE+ + + D + +S + + + DL + Sbjct: 26 QALRARIAELSEQAAAPDLWDDPDAAQVVTSNLSHAQADLKRVEDLGSRIDDLEAMVEMA 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 G+ D LA+ E E L D + ++ IR+G GG +AA Sbjct: 86 GEEEGDDAAELLAEAESDLASISKDLSEL--EIRTLLSGEYDQRDAVVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + +VL +S ++ G K + + + + E G HR+ Sbjct: 144 DFAEMLLRMYLRWAERHGYATKVLDTSYAEEAGLKSVTFEVHAPYAYGTLSVEGGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P + +++P DIRID R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQGRRQTSFAAVEVIPLIESTDHIEVPETDIRIDVFRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+PTG++V+ EKSQ QNR AM+VL++RL ++++ ++ S + Sbjct: 264 ITHLPTGLVVSMQDEKSQIQNRAAAMRVLQSRLLLLKQQEEDAKKKELAGDVKAS--WGD 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + + + D R + + + V G ID I+ + + + Sbjct: 322 QMRSYVLNPYQMVKDLRTSYEVGNPDSVFDGDIDGFIDAGIRWRKQQEQAE 372 >gi|166154673|ref|YP_001654791.1| peptide chain release factor 2 [Chlamydia trachomatis 434/Bu] gi|238687385|sp|B0B832|RF2_CHLT2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|165930661|emb|CAP04158.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis 434/Bu] Length = 368 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 177/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D + + I+ + ++S +++ K + + + D Sbjct: 26 EGKENELKELEQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDE 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 86 ESSKDLEMQKELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWV 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 + RMY R+A+ W+VEV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 144 EMVLRMYMRWASSHSWRVEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 204 PFDSNAKRHTSFASVEVFPEIDDKIEVEIHPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 264 FPTGIVVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 321 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 364 >gi|238019424|ref|ZP_04599850.1| hypothetical protein VEIDISOL_01293 [Veillonella dispar ATCC 17748] gi|237864123|gb|EEP65413.1| hypothetical protein VEIDISOL_01293 [Veillonella dispar ATCC 17748] Length = 330 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 174/334 (52%), Gaps = 18/334 (5%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 MS+ D K E + + + + Y Q + +D + ++ D + + Sbjct: 1 MSDPTFWDDPDKAREISQEATQLKNAVESYKQLVSDIEDANVMLEMAIEEDDRSLEGEIK 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 V IE+ + + E LLL D + IL AG GG+EA + L RMY R+A Sbjct: 61 DYVQQIEETVEKQEV----LLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + +E++ D+ G K I G F +K E GVHR+ R+ +A+ R HTS Sbjct: 117 EKAGFSIELMDEQPGDEAGTKSATFLIKGENAFGYLKSEKGVHRLVRISPFDAAARRHTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A V V+PE + +++I ++D+++DT RASG+GGQH+N TDSAVR+TH PTGI+V + Sbjct: 177 FAAVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHRPTGIVVQCQT 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS----GDRSERIRTYNFSQG 314 ++SQ QNR +A+++LRA+L+++E ++ A K QIG + +IR+Y F Sbjct: 237 QRSQMQNREQALRLLRAKLFELELEKQAEL-----KEQIGGTYQAIEWGSQIRSYVFHPY 291 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + ++ V+ G +D + L Sbjct: 292 NLVKDHRTGVETGNVQSVMDGNLDQFMEGFLKKE 325 >gi|302534760|ref|ZP_07287102.1| peptide chain release factor 2 [Streptomyces sp. C] gi|302443655|gb|EFL15471.1| peptide chain release factor 2 [Streptomyces sp. C] Length = 369 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 156/346 (45%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLAVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + LA+ E + E + L ++ ++ IRA GG +A+ Sbjct: 85 LAQEMDDADTLAEAEAELVSVRKALDE--MEVRTLLSGEYAEREALVNIRAEAGGVDASD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + E+ +S ++ G K + + + E G HR+ R Sbjct: 143 FAERLQRMYLRWAERHGYPTEIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP V+I ++R+D RASG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVETSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ A + G + Sbjct: 263 THIPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQARMDALKD---GGSSWGNQ 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G ID + + + + Sbjct: 320 MRSYVLHPYQMVKDLRTEFEVGNPQAVLDGEIDGFLEAGIRWRKQQ 365 >gi|15836107|ref|NP_300631.1| peptide chain release factor 2 [Chlamydophila pneumoniae J138] gi|8978947|dbj|BAA98782.1| peptide chain release factor 2 [Chlamydophila pneumoniae J138] Length = 350 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 105/350 (30%), Positives = 167/350 (47%), Gaps = 11/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + +E SE + + I + +I Y + K + + Sbjct: 1 MRGLFDLDKKQKELQVLEEESSEENFWQDSVHAGKISEQIVSLRRQIQEYQELKSKIDAI 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D ++ + ++ + L D SC L I AG GG Sbjct: 61 EFFLEDADALEDPA--ICEDLEKEFLFCEKKLAVWETQRLLSGEADKNSCFLTINAGAGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ +V LFRMY R+A +W +EV+ D + G K + SG + K E GV Sbjct: 119 TESCDWVEMLFRMYSRWATKHQWALEVVDRLDGEVVGIKHVTVKFSGMYAYGYAKAERGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++G+ HTS A+V V PE + ++I D+RIDT R+SG+GGQHVN T+ Sbjct: 179 HRLVRISPFDSNGKRHTSFASVDVFPEIDDQIKIEIRPNDLRIDTFRSSGAGGQHVNVTE 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIG 298 SAVRITH+P+G++V +E+SQ QNR MK+L+A+LY + ++S +RK +I Sbjct: 239 SAVRITHLPSGVVVSCQNERSQIQNRESCMKMLQAKLYQQVLQERLEKQSLDRKDKKEIA 298 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTA 346 G +IR Y F + D R ++ +L G +D+ I L Sbjct: 299 WG---SQIRNYVFQPYTLVKDVRTGHETGNVQAMLDGELLDEFIKAYLAE 345 >gi|169630559|ref|YP_001704208.1| peptide chain release factor 2 [Mycobacterium abscessus ATCC 19977] gi|238688912|sp|B1MEU8|RF2_MYCA9 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|169242526|emb|CAM63554.1| Peptide chain release factor 2 (PrfB) [Mycobacterium abscessus] Length = 367 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 170/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ R +E ++ D + + + +S ++ ++ + DL + Sbjct: 24 DVDGLRARIKTLEEAAADPNLWDDQARGQQVTSQLSHAQGELRRVEELRSRLDDLPVLYE 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + D+ + A E + + ++I +E L D++ ++ IR+G GG +A Sbjct: 84 LAEESEDNSVVAEADAERVKLREDIEAMEV----RTLLSGEYDEREAVVTIRSGAGGVDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 140 ADWAEMLMRMYIRWAEAHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAV Sbjct: 200 VRISPFDNQSRRQTSFADVEVLPVVETTDHIDIPEGDLRVDVYRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +EKSQ QN++ AM+VL+ARL + +R+ E A K GS Sbjct: 260 RLTHIPTGIVVTCQNEKSQLQNKVAAMRVLQARLLERKRQEERAEMDAL-KGDGGS-SWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID I + + Sbjct: 318 TQMRSYVLQPYQMVKDLRTEYEVGNPAAVLDGDIDGFIEAGIRWRNRR 365 >gi|114052078|ref|NP_001039843.1| peptide chain release factor 1-like, mitochondrial precursor [Bos taurus] gi|122135943|sp|Q2KI15|RF1ML_BOVIN RecName: Full=Peptide chain release factor 1-like, mitochondrial; AltName: Full=Mitochondrial translational release factor 1-like; Flags: Precursor gi|86826548|gb|AAI12807.1| Mitochondrial translational release factor 1-like [Bos taurus] Length = 380 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 206/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + K+QE Q+ ++ D N D +R LA+ E+ + EKEI +L+++I LL+P Sbjct: 63 ELVAVAKLLSDKEQELQETQHLLHDENED--LRKLAENEITSCEKEIAQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDKNDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +N+ AMK LRA+LY ++ Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + ++R RK+QIG+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +D+++ Sbjct: 301 EEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKDYANYESLVE 374 >gi|57168993|ref|ZP_00368122.1| peptide chain release factor 2 [Campylobacter coli RM2228] gi|305432246|ref|ZP_07401409.1| peptide chain release factor RF2 [Campylobacter coli JV20] gi|57019659|gb|EAL56348.1| peptide chain release factor 2 [Campylobacter coli RM2228] gi|304444594|gb|EFM37244.1| peptide chain release factor RF2 [Campylobacter coli JV20] Length = 365 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 186/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWNDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASMLYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + +A K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANAGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L A +++ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKSE 365 >gi|226305794|ref|YP_002765754.1| peptide chain release factor 2 [Rhodococcus erythropolis PR4] gi|229491026|ref|ZP_04384859.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121] gi|259585230|sp|C0ZXD0|RF2_RHOE4 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226184911|dbj|BAH33015.1| peptide chain release factor 2 [Rhodococcus erythropolis PR4] gi|229322142|gb|EEN87930.1| peptide chain release factor 2 [Rhodococcus erythropolis SK121] Length = 368 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 102/349 (29%), Positives = 168/349 (48%), Gaps = 14/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHT 64 + +L+ R E+E + ++ + + + +S +++ ++ + L+ Sbjct: 24 DVEELRRRIDELEHQAADPGLWNDQEHAQQVTSQLSHAQAELRRIVALRERLDEMPILYE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D D+ + A +R+ + + D++ ++ IR+G GG + Sbjct: 84 LAEDEGPDA------VADADAERASLRDDIAAMEVKTMLSGEYDERDALINIRSGAGGID 137 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A + VEV +S ++ G K I G + + E G HR Sbjct: 138 AADWAEMLMRMYIRWAEKHDYGVEVYDTSYAEEAGLKSATFAIKGPYTYGTLSVEMGTHR 197 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V VLP ++I DIR+D R+SG GGQ VNTTDSA Sbjct: 198 LVRISPFDNQGRRQTSFAEVEVLPVVETTDHIEINENDIRVDVYRSSGPGGQSVNTTDSA 257 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+THIPTGI+V +EKSQ QN++ AM+VL+A+L V+R+ E A K GS Sbjct: 258 VRLTHIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLAVKRQEERAEMDAL-KGDSGS-SW 315 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + ++ Sbjct: 316 GNQMRSYVLHPYQMVKDLRTEYEVNNPSAVLDGDIDGFLEAGIRWRMSE 364 >gi|296483896|gb|DAA26011.1| peptide chain release factor 1-like, mitochondrial precursor [Bos taurus] Length = 380 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 144/314 (45%), Positives = 206/314 (65%), Gaps = 5/314 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + K+QE Q+ ++ D N D +R LA+ E+ + EKEI +L+++I LL+P Sbjct: 63 ELVAVAKLLSDKEQELQETQHLLHDENED--LRKLAENEITSCEKEIAQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDKNDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTGI+ E+SQ +N+ AMK LRA+LY ++ Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGIVSECQQERSQLKNKEMAMKKLRAKLYSLQL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + ++R RK+QIG+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +D+++ Sbjct: 301 EEETSKRYNARKIQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGEYLLDELV 360 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 361 QSLKDYANYESLVE 374 >gi|317968157|ref|ZP_07969547.1| peptide chain release factor 2 [Synechococcus sp. CB0205] Length = 356 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---T 64 + LK R ++E S+ D + + + +++ Q K D Sbjct: 7 DVAALKARQQDLEQLASQPDFWDDQKLAQSKMRQLDEVKAQLEQLSQWKGAVADAEATVE 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + G D + + R L T D + ++ I AG GG++ Sbjct: 67 IYGLEPDDELLSESDAALKKLRADLDRW-----ELERLLSGTYDKEGAVISINAGAGGTD 121 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A KV V SD ++ G K I GR + ++ E G HR Sbjct: 122 AQDWALMLMRMYTRWAEDHGMKVTVDELSDGEEAGIKSCTIEIEGRYAYGYLRNEKGTHR 181 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+ + TS A V V+P+ E +DIP +D+ I T R+ G+GGQ+VN ++A Sbjct: 182 LVRISPFNANDKRQTSFAGVEVMPKIEEEVKLDIPEKDLEITTSRSGGAGGQNVNKVETA 241 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I Sbjct: 242 VRILHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAW 300 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R ++ V+ G +D I LL A Sbjct: 301 GNQIRNYVFHPYQMVKDLRTQHETTDVQGVMDGDLDPFIQSLLHA 345 >gi|309777858|ref|ZP_07672804.1| peptide chain release factor 2 [Erysipelotrichaceae bacterium 3_1_53] gi|308914419|gb|EFP60213.1| peptide chain release factor 2 [Erysipelotrichaceae bacterium 3_1_53] Length = 327 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 90/327 (27%), Positives = 161/327 (49%), Gaps = 12/327 (3%) Query: 25 ESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 + + I I+ + + ++ H ++ + D Sbjct: 4 QDDFWSDPQHAQTLIRQLNGIKDIVESYEKLNSALEGLEETHDLLKEDYDDEIFELFEAE 63 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 + E+ + ++ +L D S ILE+ G GG+E+ + L+RMY R+A Sbjct: 64 YM-----EMEKNFDDFEIKILLSHEYDHSSAILELHPGAGGTESCDWADMLYRMYSRWAE 118 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + +KV VL ++ G K + + G + +K E GVHR+ R+ ++ GR HTS Sbjct: 119 KKGFKVSVLDYLPGEEAGIKSVTFLVEGDMAYGYLKAEKGVHRLVRISPFDSGGRRHTSF 178 Query: 202 ATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A++ V+P+ + +++I ED+ ++T RASG+GGQH+N TDSAVR+ H PTG++ + Sbjct: 179 ASLDVMPQFNDEIEIEIKPEDLIVETKRASGAGGQHINKTDSAVRMVHKPTGLVATCQNG 238 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQH+NR A++VL++RLY + + + + Q + + +IR+Y F + D Sbjct: 239 RSQHENREEALRVLKSRLYQKMIEEQEAKLAEIKGEQKAN-EWGSQIRSYVFHPYSMVKD 297 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLT 345 HR + ++ V+ G +D I L Sbjct: 298 HRTSCETSDVQGVMDGDLDAFIFAYLK 324 >gi|220910508|ref|YP_002485819.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425] gi|219867119|gb|ACL47458.1| peptide chain release factor 2 [Cyanothece sp. PCC 7425] Length = 361 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 88/348 (25%), Positives = 163/348 (46%), Gaps = 12/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 + L+ + +++E ++ D +E + + ++ + + Sbjct: 16 DVPALQAKISDLEQVAAQPNFWDDQATAQVTLQELNELKSHLEQLHRWQATLSDAVAALE 75 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ +S +++ + ++ + L T D +L I AG GG++ Sbjct: 76 LVELEPDESLLQEASDNLKQLDQQLSQW-----ELEQLLSGTYDRNGAVLTINAGAGGTD 130 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A +KV + S+ D+ G K I GR + ++ E G HR Sbjct: 131 AQDWAEMLLRMYTRWAEQHGYKVHLAELSEGDEAGIKSATLEIDGRYAYGYLRSEKGTHR 190 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+G+ TS A V V+P+ ++IP +D+ I T R+ G GGQ+VN ++A Sbjct: 191 LVRISPFNANGKRQTSFAGVEVMPQLDHSVQLEIPDKDLEITTSRSGGKGGQNVNKVETA 250 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI H+PTG+ V + E+SQ QN+ +A+ +L+A+L + +++ A E + R + Sbjct: 251 VRIVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLIIAQEQKAQEIADIRGDAVE-AAW 309 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R + +E V+ G +D+ I L Sbjct: 310 GTQIRNYVFDPYKLVKDVRTGVETQAIEVVMNGELDEFIQAYLRQENQ 357 >gi|256828464|ref|YP_003157192.1| bacterial peptide chain release factor 2 (bRF- 2) [Desulfomicrobium baculatum DSM 4028] gi|256577640|gb|ACU88776.1| bacterial peptide chain release factor 2 (bRF- 2) [Desulfomicrobium baculatum DSM 4028] Length = 369 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 124/337 (36%), Positives = 187/337 (55%), Gaps = 10/337 (2%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R EIE ++S + D LT + + S++ ++ Q + + +++ Sbjct: 31 KERLNEIEKQISSPGAWDKPELLTPVLQEKTQLESRVDEWEALLQARDNALEWVEMASTE 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 +++ Q A+E+ +LE L D +D ILEI G GG+E+ + L Sbjct: 91 Q-TQEMLQALEEALEEMSAKLEA-AQMRTLLSDPEDVSEAILEIHPGAGGTESQDWAEML 148 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A +KVE+L D+ G K + I G + ++K E G HR+ R+ + Sbjct: 149 LRMYRRFAERVGFKVELLDLLPGDEAGIKSVTLHIHGPYAYGQLKGEKGTHRLIRISPFD 208 Query: 193 ASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 +SGR HTS A+V V P+A +I+++I ED+R+D R+SG GGQ VNTTDSAVR+THIPT Sbjct: 209 SSGRRHTSFASVDVYPDAGQDIEIEIRDEDVRVDIFRSSGPGGQSVNTTDSAVRVTHIPT 268 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRT 308 G++ +EKSQH+N+ AMKVL+ARLY++E +++A+ER A K I G +IRT Sbjct: 269 GLVAQCQNEKSQHKNKEAAMKVLKARLYELELQKIASERQAEYVAKGAIAFG---SQIRT 325 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 Y R + DHR ++ VL G ID I+ L Sbjct: 326 YTLQPYRLVKDHRTGTDTSNVDSVLDGNIDAFIHNYL 362 >gi|328882777|emb|CCA56016.1| Peptide chain release factor 2 [Streptomyces venezuelae ATCC 10712] Length = 367 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 160/346 (46%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLEKLRADIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLAVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + LA+ E E + L D++ ++ IRA GG +A+ Sbjct: 85 LAEEMDDPDTLAEAEAELTSVRKALDE--MEVRTLLSGEYDEREALVNIRAEAGGVDASD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + EV +S ++ G K + + + E G HR+ R Sbjct: 143 FAERLQRMYLRWAERHGYSTEVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V +LP + V+I ++R+D RASG GGQ VNTTDSAVRI Sbjct: 203 ISPFDNQGRRQTSFAGVEILPVVESSDHVEIDESELRVDVYRASGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + +R+ + A + G+ + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERQRQEERAKMDALKDSGSSWGN---Q 319 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + + VL G ID + + + + Sbjct: 320 MRSYVLHPYQMVKDLRTEFEVGNPQSVLDGEIDGFLEAGIRWRKQQ 365 >gi|46406291|emb|CAG25777.1| putative translation releasing factor 2 [Cucumis sativus] Length = 453 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 163/341 (47%), Gaps = 5/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L A++E + +++ D K + A++ + KI + K + ++ T++ Sbjct: 103 LLQLDQELADLESKAADNSFWDDRSKAQKVLMAMTDVKDKIKMLTDFKTQVEEAETIVKL 162 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E I K++ + ++ L D + ++ I AG GG++A + Sbjct: 163 TEEMDSVDVGLLEEATKIIKDLNKALDQFELSELLSGPYDKEGAVISISAGAGGTDAQDW 222 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K I GR + + E G HR+ R Sbjct: 223 ADMLLRMYVRWGEKQRYKTRVVEKSAGEEAGIKSATIEIEGRYAYGYISGEKGTHRIVRQ 282 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + G TS + V V+P ++V++P ED+ I RA G GGQ+VN ++AVRI Sbjct: 283 SPFNSKGLRQTSFSGVEVMPLLPDESMNVELPEEDLEISFSRAGGKGGQNVNKVETAVRI 342 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 343 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 401 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y F + + D R + V+ G ++ I L Sbjct: 402 IRNYVFHPYKLVKDVRTGYETSDIVSVMDGELEPFIKAYLK 442 >gi|219849743|ref|YP_002464176.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485] gi|254790911|sp|B8G607|RF2_CHLAD RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|219544002|gb|ACL25740.1| hypothetical protein Cagg_2879 [Chloroflexus aggregans DSM 9485] Length = 367 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 110/351 (31%), Positives = 172/351 (49%), Gaps = 12/351 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 H + + ++E+R S+ + +L + + ++ + D + +L Sbjct: 22 HLDLAAKQAEIEQLEVRASDPELWNTPRVAQELMQRLTRLKEEVALWNDLDHRMTSLAEL 81 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + +S DLA + + +L DD+ L I+AG GG Sbjct: 82 IELAEQEGDESLAADLAAELRAVQREVAQ-----RELEILLSGPYDDRDAFLSIQAGMGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 ++A + L RMY R+A R + V ++ S+ ++ G K I G + + E+GV Sbjct: 137 TDAQDWAAMLLRMYTRWAERRGYTVNLIDLSEGEEAGIKSATIEIRGPYAYGYARAEAGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ A+ TS A V V+PE + +V+I ED+RID R+ G GGQ VNTTD Sbjct: 197 HRLIRLSPFNAAHTRQTSFARVEVMPEVDDAPEVEIKPEDLRIDVFRSGGHGGQGVNTTD 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTGI+V +E+SQ QNR A++VLRARL + E +R A ER+ R + Sbjct: 257 SAVRITHLPTGIVVTCQNERSQIQNRETALRVLRARLLERELQRQAEERARLR-GEYREA 315 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++RTY + DHR + ++ VL G ID I L A+ + Sbjct: 316 AFGNQMRTYYLHPSTLVKDHRTDYETSNVQAVLDGEIDPFIEAFLRANVRE 366 >gi|86149455|ref|ZP_01067686.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CF93-6] gi|86151896|ref|ZP_01070109.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 260.94] gi|88596537|ref|ZP_01099774.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 84-25] gi|148925627|ref|ZP_01809315.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CG8486] gi|205356111|ref|ZP_03222878.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|218563058|ref|YP_002344837.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124892|ref|YP_004066896.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|24638160|sp|Q9PMK5|RF2_CAMJE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|85840237|gb|EAQ57495.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CF93-6] gi|85841004|gb|EAQ58253.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 260.94] gi|88191378|gb|EAQ95350.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 84-25] gi|112360764|emb|CAL35563.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|145845637|gb|EDK22728.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CG8486] gi|205345954|gb|EDZ32590.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni CG8421] gi|284926663|gb|ADC29015.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni IA3902] gi|315018614|gb|ADT66707.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315927400|gb|EFV06738.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930833|gb|EFV09825.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 305] Length = 365 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 184/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + + K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|166155548|ref|YP_001653803.1| peptide chain release factor 2 [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|238687484|sp|B0BC97|RF2_CHLTB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|165931536|emb|CAP07112.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 368 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 177/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D + + I+ + ++S +++ K + + + D Sbjct: 26 EGKENELKELEQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDE 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 86 ESSKDLEMQKELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWV 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 + RMY R+A+ W+VEV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 144 EMVLRMYMRWASSHSWRVEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 204 PFDSNAKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 264 FPTGIVVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 321 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 364 >gi|148272488|ref|YP_001222049.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147830418|emb|CAN01353.1| peptide chain release factor RF-2 [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 367 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 174/346 (50%), Gaps = 13/346 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ E+ + E D K + + +S S++ D+ ++ DL ++ Sbjct: 26 VERLQQEVEELSAQAGEPDLWDDTEKAQKVTSDLSHRQSELKRIDELQRRLDDLDVLVEM 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E + A +E+ I K + ELE + D + ++ IRAG GG +AA F Sbjct: 86 AKDDEESAEEAVVELAGITKIMDELEVQTL----LNGEFDPRPAVVTIRAGAGGVDAADF 141 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + VL +S ++ G K I F + E+G HR+ R+ Sbjct: 142 AEMLMRMYLRWAEQHDYSATVLDTSYAEEAGIKSATFEIDAPYAFGTLSVEAGTHRLVRM 201 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++G+ TS A V V+P ++IP ++R+D R+SG GGQ VNTTDSAVRIT Sbjct: 202 SPFNSAGKRQTSFAAVEVVPLIEQTESIEIPENEMRVDVFRSSGPGGQSVNTTDSAVRIT 261 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG--SGDRSE 304 H+PTGI+V +EKSQ QNR A++VL++RL V+R+ + +A +K G + + Sbjct: 262 HLPTGIVVTCQNEKSQIQNRAAALRVLQSRLLLVQRE----QEAATKKELAGNITASWGD 317 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 ++R+Y + + + D R + V G +D I+ + ++ Sbjct: 318 QMRSYVLAPYQMVKDLRTEHEVNNPSNVFDGDLDGFISAGIRWRKS 363 >gi|111023366|ref|YP_706338.1| peptide chain release factor 2 [Rhodococcus jostii RHA1] gi|123339715|sp|Q0S2Q6|RF2_RHOSR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|110822896|gb|ABG98180.1| peptide chain release factor RF2 [Rhodococcus jostii RHA1] Length = 368 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E + ++ + + + +S +++ ++ + D+ + Sbjct: 24 DVEELRRRIDELEHQAADPELWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +E + + D++ ++ IR+G GG +AA Sbjct: 84 LAEDEGADAIADADAERHSLRED---IAAMEVKTMLSGEYDERDALVNIRSGAGGVDAAD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + VEV +S ++ G K + + + E G HR+ R Sbjct: 141 WAEMLMRMYVRWAEKHGYGVEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +D+ D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 201 ISPFDNQGRRQTSFAEVEVLPVVETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRL 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L +V+RK E A K GS + Sbjct: 261 THIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLEVKRKEERAEMDAL-KGDGGS-SWGNQ 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + + Sbjct: 319 MRSYVLHPYQMVKDLRTEYEVNNPSAVLDGDIDGFLESGIRWRMRE 364 >gi|256826989|ref|YP_003150948.1| peptide chain release factor 2 [Cryptobacterium curtum DSM 15641] gi|256583132|gb|ACU94266.1| peptide chain release factor 2 [Cryptobacterium curtum DSM 15641] Length = 364 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 167/345 (48%), Gaps = 8/345 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K R AE++ + ++ D + S I + + Y+ D + Sbjct: 23 IDARKQRLAELDQQTAQPGFWDDIDRAQAVSKEASDIRTLLDTYEHAHTLLDDWRCALDL 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + E E+ L ++ + D+ CI+ I G+GG EA + Sbjct: 83 AQDDPDFA----TEAQKAADELSRLLDDFEIESWFGNRFDEGDCIVTINPGSGGLEAQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LF MY +YA R WKV VL + + G + I GR + ++ E GVHR+ R+ Sbjct: 139 CDMLFHMYTKYAENRGWKVRVLDAPLGEVIGIEHASFQIEGRFAYGMLRSEIGVHRLVRI 198 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R HT+ A+V V+P +I+V++ D+R+D RASG GGQ VNTTDSAVR+T Sbjct: 199 SPTDDKKRRHTTFASVEVMPVLPDDIEVNLNPADVRVDVYRASGPGGQCVNTTDSAVRLT 258 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG +V ++KSQ QN+ A ++LRARL+++E ++ E A R + +I Sbjct: 259 HIPTGTVVTCQNQKSQLQNKEAAFRILRARLFELEERKRQEEIEALR-GEKRENSFGSQI 317 Query: 307 RTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R Y + + D R + ++ VL G +D + + ++ Sbjct: 318 RNYVLYPYQMVKDLRSGIETGNVDAVLGGDLDQFVIGYHRWNASR 362 >gi|182624026|ref|ZP_02951814.1| peptide chain release factor 2 [Clostridium perfringens D str. JGS1721] gi|177910919|gb|EDT73273.1| peptide chain release factor 2 [Clostridium perfringens D str. JGS1721] Length = 323 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/326 (32%), Positives = 163/326 (50%), Gaps = 9/326 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-DHNSDSEIRDLAQI 81 M E+ D K E + KI + + D+ + +D E Sbjct: 1 MQEAGFWDDVQKAQEVTQEAKRVKDKIDKFKNLNERIDDVEVLKELMEENDEETAKEIIS 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 EV A+ KEI L + D IL + G GGS+A + L RMY R+ Sbjct: 61 EVKALSKEIDTL----KIETILSGEYDRNDAILTLHTGVGGSDANDWTEMLLRMYTRWCE 116 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +++ +E + D+ G K + + G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 KKEYSLETIDYLPGDEAGVKSVTLKVKGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE ++ D++I D+RIDT RA G+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 177 ASVEVLPELTSDQDIEINPVDLRIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQ NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 237 RSQFSNRDTAMGMLKSKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKD 295 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLL 344 HR N + V+ G ID+ I L Sbjct: 296 HRTNFETSNVNGVMDGDIDNFIIAYL 321 >gi|54020410|ref|YP_115756.1| peptide chain release factor 1 [Mycoplasma hyopneumoniae 232] gi|61214589|sp|Q601F9|RF1_MYCH2 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|53987583|gb|AAV27784.1| peptide chain release factor 1 (RF-1), peptide termination factor [Mycoplasma hyopneumoniae 232] Length = 361 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 151/349 (43%), Positives = 234/349 (67%), Gaps = 8/349 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ +++ + ++ + + +E A+I+ II + ++ +D T+ Sbjct: 9 LMKIHQKYQDLKQLLETDQILNDQKQYLQIAKEIASITEIIEVFQKFLDDQKVLEDAKTI 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ LA++E+ + K I E E ++ L+LPKD +D+K I+EIR GG EA Sbjct: 69 LIQE-DDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAAGGDEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +FVGDLF+MY ++A +K KV+VLSSS GG+ +I+ ISG+ ++S++KFESGVHRV Sbjct: 128 NIFVGDLFKMYHKWADSQKAKVKVLSSSLALAGGFSQIIFQISGQKIYSKLKFESGVHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVPATE GR+HTS ATV V+P+ E +++I D++IDT R+SG+GGQ VNTTDSAV Sbjct: 188 QRVPATETMGRIHTSTATVTVMPKIDEKIEIEINPSDLKIDTYRSSGAGGQSVNTTDSAV 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V + E+SQ N+ AM +L++++Y++E ++ ++S RKL GSG RS Sbjct: 248 RITHIPTGIVVTSQDERSQIGNKEIAMGILKSKIYNLELQKQQQKQSDFRKLA-GSGARS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 E+IRTYN+ Q R+TDHRIN + L+ ++QG ++ II LL + ++I Sbjct: 307 EKIRTYNYPQDRLTDHRINFSTS-LKPIIQGNLNPIIEALLAQEKTELI 354 >gi|148543602|ref|YP_001270972.1| peptide chain release factor 2 [Lactobacillus reuteri DSM 20016] gi|184153010|ref|YP_001841351.1| peptide chain release factor 2 [Lactobacillus reuteri JCM 1112] gi|227363435|ref|ZP_03847559.1| peptide chain release factor RF2 [Lactobacillus reuteri MM2-3] gi|325681956|ref|ZP_08161474.1| peptide chain release factor RF2 [Lactobacillus reuteri MM4-1A] gi|148530636|gb|ABQ82635.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus reuteri DSM 20016] gi|183224354|dbj|BAG24871.1| peptide chain release factor 2 [Lactobacillus reuteri JCM 1112] gi|227071535|gb|EEI09834.1| peptide chain release factor RF2 [Lactobacillus reuteri MM2-3] gi|324978600|gb|EGC15549.1| peptide chain release factor RF2 [Lactobacillus reuteri MM4-1A] Length = 332 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 106/337 (31%), Positives = 171/337 (50%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M++ + + + A + + K + + + DL ++ D ++ Sbjct: 1 MAQPDFWNDNEQAQKVIAENNILKEKRDTFVNLRDQIGDLETSLELLAVEPDDDLQKEFE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L D K+ ILEI G GG+EA + L RMY R+ Sbjct: 61 ASFTNTQKALEQ-----YRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYVRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + VE S D+ G K + I G F ++ E GVHR+ R+ +A+GR HT Sbjct: 116 GEQHGFSVETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE ++VDI D+R+DT R+SG+GGQH+N T+SAVRITHIPTGI+ + Sbjct: 176 SFASVDVMPELDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ QNR+ AM +L+++LY++E ++ A +R+ Q IG G +IR+Y F Sbjct: 236 AERSQLQNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWG---SQIRSYVFHPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + D+R + + V+ G +D I+ L ++ Sbjct: 293 LVKDNRTGYETHNGQAVMDGDLDPFIDAFLQWKLSQK 329 >gi|149744102|ref|XP_001501636.1| PREDICTED: similar to Mitochondrial translational release factor 1-like [Equus caballus] Length = 380 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 142/303 (46%), Positives = 204/303 (67%), Gaps = 5/303 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + +K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELVAVARLLSEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + ++ ILE+ AG GG EA LF ++F MY+RYAA ++W E L ++ GG + Sbjct: 121 SEETNENDLILEVTAGVGGQEAMLFTSEIFDMYQRYAAFKRWHFETLEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR AMK LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSMHV 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + ++R RK+QIG+ RSE+IRTYNF Q R+TDHRIN +L+ LE +QG +D+++ Sbjct: 301 EEETSKRYNARKVQIGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLETFMQGENLLDELV 360 Query: 341 NPL 343 L Sbjct: 361 QSL 363 >gi|147732321|sp|Q68X96|RF2_RICTY RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 369 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 178/347 (51%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 I L R E+E ++ + + I K+++++ K +D+ + Sbjct: 24 DIESLTIRLTELEELTADPSLWNNNANAQILLREKTNIEEKLNVFNNLKSNFEDILELEA 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D E + + + + +LE L D D +C LEI AG GG+E+ Sbjct: 84 MAEVENDFETLNQIEQDFKKLSIIAAKLET----ECLFSDESDYNNCFLEINAGAGGTES 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K ++++ + ++ G K I G+ + K E+GVHR+ Sbjct: 140 HDWASIMMRMYLRFAERLGFKTQIINMINGEEVGIKSCTIRIIGKRAYGWFKTEAGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAV Sbjct: 200 VRISPFNAAGKRMTSFASSWVYPEIDDDIAITIEDKDLRIDTFRASGAGGQHVNTTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGD 301 RITHIPT + S++SQH+N+ +AMK+L+A+LY +E ++ + ++ K G Sbjct: 260 RITHIPTNTVTQCQSDRSQHKNKAQAMKMLQAKLYKLEMQKRTDSVDKQNANKTDNSWG- 318 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ ++ L + Sbjct: 319 --HQIRSYVLQPYQIVKDLRTDYETSDTKGVLDGNLENFVSASLAMN 363 >gi|188586825|ref|YP_001918370.1| peptide chain release factor 2 (bRF-2) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351512|gb|ACB85782.1| peptide chain release factor 2 (bRF-2) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 344 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 124/351 (35%), Positives = 189/351 (53%), Gaps = 15/351 (4%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 ++ R E+E +M+E D K+T+E + + +I D+ K E + + + Sbjct: 1 MEKRLKELEKQMTEPGFWDDQDRAKKVTQERQELKEHLDEIKELDELKDEVSVMIELSEE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +D E+ + E +EI + KD D+ + I+ + AG GG+E+ + Sbjct: 61 DETDG----TNMKEIKQALFQFEEQLSEIRLKNMLKDRYDENNAIISLHAGAGGTESQDW 116 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V L RMY R+ R + E L D+ G K + + G+ F +K E+GVHR+ RV Sbjct: 117 VEMLHRMYIRWMEHRGFNYETLDFLPGDEAGVKSVTMMVKGKYAFGYLKSEAGVHRLVRV 176 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS A++ V+P +I++DI +D++IDT RASG+GGQHVNTTDSAVRIT Sbjct: 177 SPFDSSGRRHTSFASMDVVPEIDDDIEIDIKDDDLKIDTYRASGAGGQHVNTTDSAVRIT 236 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 H PTGI+V +E+SQH+NR AMK+L+A+L +E ++ E+ A R K +I G Sbjct: 237 HHPTGIVVQCQNERSQHKNREVAMKILKAKLAAIEEEKRRQEQEAMRGDKKEIAWG---S 293 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +IR+Y F + DHR NL + VL G +D I L + Sbjct: 294 QIRSYVFHPYTMVKDHRTNLEEGNADAVLDGKLDHFIQEYLKQRMNDRMSQ 344 >gi|312601125|gb|ADQ90380.1| Peptide chain release factor 1 [Mycoplasma hyopneumoniae 168] Length = 357 Score = 211 bits (537), Expect = 1e-52, Method: Composition-based stats. Identities = 151/349 (43%), Positives = 233/349 (66%), Gaps = 8/349 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ +++ + ++ + + +E A+IS II + ++ +D T+ Sbjct: 5 LMKIHQKYQDLKQLLETDQILNDQKQYLQIAKEIASISEIIEVFQKFLDDQKVLEDAKTI 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ LA++E+ + K I E E ++ L+LPKD +D+K I+EIR GG EA Sbjct: 65 LIQE-DDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAAGGDEA 123 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +FVGDLF+MY ++A +K KV+VLSSS GG+ +I+ ISG+ ++S++KFESGVHRV Sbjct: 124 NIFVGDLFKMYHKWADSQKAKVKVLSSSLALAGGFSQIIFQISGQKIYSKLKFESGVHRV 183 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVPATE GR+HTS ATV V+P+ E +++I D++IDT R+SG+GGQ VNTTDSAV Sbjct: 184 QRVPATETMGRIHTSTATVTVMPKIDEKIEIEINPSDLKIDTYRSSGAGGQSVNTTDSAV 243 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+ + E+SQ N+ AM +L++++Y++E ++ ++S RKL GSG RS Sbjct: 244 RITHIPTGIVATSQDERSQIGNKEIAMGILKSKIYNLELQKQQQKQSDFRKLA-GSGARS 302 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 E+IRTYN+ Q R+TDHRIN + L+ ++QG ++ II LL + ++I Sbjct: 303 EKIRTYNYPQDRLTDHRINFSTS-LKPIIQGNLNPIIEALLAQEKTELI 350 >gi|258591448|emb|CBE67749.1| Peptide chain release factor 2 (RF-2) [NC10 bacterium 'Dutch sediment'] Length = 334 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 167/332 (50%), Gaps = 16/332 (4%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + ++ +E A+ ++ ++ + + L ++ + +++L Sbjct: 1 MLHSQEFWADTSRAREIMKEQRALKDVVDQLVAIGGELDDLAVLLGLLREEEDPQALKEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + + + + D + IL I G GG+E+ + L RMY R Sbjct: 61 ESS-----LRSLEGQIGALELTTFMAEEYDSGNAILSINPGAGGTESQDWAQMLLRMYLR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +K E++ ++ G K T+SG+ + R+K E GVHR+ R+ +A+ R H Sbjct: 116 WAETGSYKTEIIDLLPAEEAGIKSATVTVSGKYAYGRLKAEIGVHRLVRISPFDANHRRH 175 Query: 199 TSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V V PE E I +D+RIDT R+SG+GGQHVN TDSAVRITH+PT I+V Sbjct: 176 TSFASVFVYPEIDETIDVAIDDKDLRIDTYRSSGAGGQHVNVTDSAVRITHLPTNIVVSC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 +E+SQH+N+ AMKVLRARLYD R+ E + K I G +IR+Y + Sbjct: 236 QNERSQHKNKAMAMKVLRARLYDHYRREQEKEMAKLEGEKKDIAWG---SQIRSYVLAPY 292 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + DHR L ++ VL G I+ I+ L Sbjct: 293 QLVKDHRTGLETSNVDKVLDGEIEPFIDAFLM 324 >gi|114798643|ref|YP_760613.1| peptide chain release factor 2, programmed frameshift [Hyphomonas neptunium ATCC 15444] gi|123128746|sp|Q0C0Y0|RF2_HYPNA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|114738817|gb|ABI76942.1| peptide chain release factor 2, programmed frameshift [Hyphomonas neptunium ATCC 15444] Length = 368 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 108/338 (31%), Positives = 161/338 (47%), Gaps = 12/338 (3%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R E+ D + + I++ +++ D ++ D+ Sbjct: 30 KRLDELTALSERPNFWDDPQEAQAMMRERQKLADGIALVQTLEKDVADAPELMELAEGDA 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + + + E L D C L+I AG GG+E+ + L Sbjct: 90 SMLADLEATLRRAAARA----AEAELAALLSGEADGNDCYLQINAGEGGTESQDWASILR 145 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A R + VE+L D ++ G K I G + +K E GVHR+ R+ ++ Sbjct: 146 RMYVRWAEKRGYGVELLDERDGEEAGIKSATLQIKGENAYGWLKSEQGVHRLVRISPFDS 205 Query: 194 SGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 S R HTS ++VAV P +IDV+I D+R DT RASG+GGQHVN TDSAVR+THIPT Sbjct: 206 SARRHTSFSSVAVSPVIDDKIDVEINPSDVRTDTYRASGAGGQHVNRTDSAVRLTHIPTN 265 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTY 309 +V + +SQHQNR A K+LR++LY++E ++ A K IG G +IR+Y Sbjct: 266 TVVQCQAGRSQHQNRDEAWKMLRSKLYELELQKRRAVADAQYADKSAIGFG---HQIRSY 322 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + + D R + VL G ID ++ L A Sbjct: 323 VLQPYQMVKDLRTEVETSDTSGVLDGDIDRFLSAALAA 360 >gi|87300848|ref|ZP_01083690.1| peptide chain release factor 2 [Synechococcus sp. WH 5701] gi|87284719|gb|EAQ76671.1| peptide chain release factor 2 [Synechococcus sp. WH 5701] Length = 355 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 164/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E S+ D + ++ + + +++ Q + D + Sbjct: 7 DVPALNARQQDLEQLASQPDFWDDQQQAQKQMRQLDEVKAQLEQLQQWRTAVDDARATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E + E + ++ + L D + ++ I AG GG++A Sbjct: 67 LY--DLEPDEELLSEANGGLQSLKAALDRWELERLLSGPYDKEGAVISINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WALMLMRMYTRWAEDHGMKVSVDELSEGEEAGIKSCTIEIDGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ ++ +DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKLEEDVKLDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTG+ V + E+SQ QN+ +AM +L A+L + +++ A+E + R I + Sbjct: 245 LHVPTGLAVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRASEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R + ++ V+ G +D I LL Sbjct: 304 IRNYVFHPYQMVKDLRTAVETTDVQGVMDGDLDPFIQALLRQ 345 >gi|312278454|gb|ADQ63111.1| Bacterial peptide chain release factor 2 (BRF-2) [Streptococcus thermophilus ND03] Length = 326 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 105/333 (31%), Positives = 179/333 (53%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E + I + ++ + K ++ K+ + + D D Q E Sbjct: 1 MTEPDFWNDNIAAQKTSQELNELKIKYETFNNMKELSDETELYLEMLEED----DSVQEE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +++ ++ LL + D + ILEI G+GG+EA + L RMY+RY Sbjct: 57 LEETLEKLDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWAEMLLRMYQRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVETLDYQAGDEAGIKSVTLAFEGPNAYGFLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVEIRDDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E +A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAEEVNALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR + +++ V+ G I+ I+ L + Sbjct: 294 DHRTGYGVAQVDKVIDGDIEGFIDAYLKWRMEE 326 >gi|226365870|ref|YP_002783653.1| peptide chain release factor 2 [Rhodococcus opacus B4] gi|254790919|sp|C1B1L3|RF2_RHOOB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|226244360|dbj|BAH54708.1| peptide chain release factor 2 [Rhodococcus opacus B4] Length = 368 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 97/346 (28%), Positives = 162/346 (46%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L+ R E+E + ++ + + + +S +++ ++ + D+ + Sbjct: 24 DVEELRRRIDELEHQAADPELWNDQEHAQQVTSQLSHSQAELRRVEELRTRLDDMPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +E + + D++ ++ IR+G GG +AA Sbjct: 84 LAEDEGAEAIADADAERHSLRED---IAAMEVKTMLSGEYDERDALVNIRSGAGGVDAAD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + VEV +S ++ G K + + + E G HR+ R Sbjct: 141 WAEMLMRMYIRWAEKHGYGVEVYDTSYAEEAGIKSATFAVKAPYSYGTLSVEMGTHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP +D+ D+R+D R+SG GGQ VNTTDSAVR+ Sbjct: 201 ISPFDNQGRRQTSFAEVEVLPVVETTDHIDVNENDVRVDVYRSSGPGGQSVNTTDSAVRL 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN++ AM+VL+A+L +V+RK E A K GS + Sbjct: 261 THIPTGIVVTCQNEKSQLQNKVSAMRVLQAKLLEVKRKEERAEMDAL-KGDGGS-SWGNQ 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + VL G ID + + + Sbjct: 319 MRSYVLHPYQMVKDLRTEYEVNNPSSVLDGDIDGFLESGIRWRMRE 364 >gi|256848105|ref|ZP_05553549.1| peptide chain release factor 2 [Lactobacillus coleohominis 101-4-CHN] gi|256715165|gb|EEU30142.1| peptide chain release factor 2 [Lactobacillus coleohominis 101-4-CHN] Length = 332 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 105/337 (31%), Positives = 174/337 (51%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M+ + + + + + + + + + DL ++ + D ++L Sbjct: 1 MTAPDFWNDSEQAQKLINDNNQLKERRDTFTNLRDQLADLATSVELLKEMPDDDLQKELD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q ++ + + L D + ILEI G GG+EA + L RMY R+ Sbjct: 61 QK-----LPQVEKQLEQYRLSQLLSGPYDANNAILEIHPGAGGTEAQDWGEMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + VE + ++ G K + I G F + E GVHR+ R+ +A+GR HT Sbjct: 116 ADQHSFDVETAAYEAGEEAGIKSVTLLIKGHNAFGYLHPEKGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE ++VDI D+R+DT R+SG+GGQH+N T+SAVRITH+PTGI+ + Sbjct: 176 SFASVDVMPELDESVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHLPTGIVTSSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ QNR+ AM +L+++LY++E+++ A +R+ Q IG G +IR+Y F Sbjct: 236 AERSQLQNRVTAMNMLKSKLYELEQEKQAKQRAELEGEQLEIGWG---SQIRSYVFHPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + D+R + + V+ G +D IN L +K Sbjct: 293 LVKDNRTGYETHDGQSVMDGDLDPFINAYLQWQLSKK 329 >gi|210631232|ref|ZP_03296815.1| hypothetical protein COLSTE_00700 [Collinsella stercoris DSM 13279] gi|210160119|gb|EEA91090.1| hypothetical protein COLSTE_00700 [Collinsella stercoris DSM 13279] Length = 376 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 109/350 (31%), Positives = 172/350 (49%), Gaps = 11/350 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + + R E+E + D A ++ + + + D+ + D + Sbjct: 30 IEEARGRVTELEEASAAPGFWDDAEAARAYMAELAQVKGDVGLVDRAHERLSDARAALEL 89 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + E A +E+ +E+ D S IL I+ G GG EA + Sbjct: 90 ADEMGQDGAEFIAEAAAAAEELTRAIDEMELSSWFTGEFDHGSAILSIKPGQGGLEAQDW 149 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LF+MY +Y A R WKV V + G T+ G+ F ++ E+GVHR+ R+ Sbjct: 150 TFMLFKMYMKYFARRGWKVTVNDCPAAEVIGIDRATITVEGKDAFGMLRAEAGVHRLVRI 209 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+A R T+ A V V+P +I++++ +DIR+D ASG GGQ VNTTDSAVR+T Sbjct: 210 SPTDAKKRRQTTFAGVEVIPVLPDDIEIEVAPDDIRVDVYHASGPGGQGVNTTDSAVRVT 269 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTGI+V +E+SQ QN+ M++L+ARLY++E ++ A R K +IG G+ Sbjct: 270 HIPTGIVVTCQNERSQIQNKAACMQILKARLYELELEKRAETLDEIRGPKTEIGFGN--- 326 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTA--HQAK 350 +IR+Y + + D R + ++ VL G +D I QA+ Sbjct: 327 QIRSYVLYPYQMVKDLRSGVETSNVDSVLEDGDLDPFIIGYHRWATEQAE 376 >gi|260663162|ref|ZP_05864054.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN] gi|260552354|gb|EEX25405.1| peptide chain release factor 2 [Lactobacillus fermentum 28-3-CHN] Length = 332 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 105/334 (31%), Positives = 172/334 (51%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D + E+ AA++ + + + + + ++L ++ + + E Sbjct: 1 MTAPDFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEPDPE--LKAE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++E L D ILEI G GG+EA + L RMY R+A Sbjct: 59 LDNNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + VE + ++ G K + I G + + E GVHR+ R+ +++ R HTS A Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+P I+V+I D+R+DT RASG+GGQH+N T+SAVRITH+PTGI+ + +E+ Sbjct: 179 SVDVMPILDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQAER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR+ AM +L+++LY++E ++ A ER+ Q IG G +IR+Y F + Sbjct: 239 SQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWG---SQIRSYVFHPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 D R + + V+ G +D IN L + A+ Sbjct: 296 DARTGYETHDVIGVMDGDLDPFINAYLQWNLAQK 329 >gi|315658891|ref|ZP_07911758.1| peptide chain release factor RF2 [Staphylococcus lugdunensis M23590] gi|315496015|gb|EFU84343.1| peptide chain release factor RF2 [Staphylococcus lugdunensis M23590] Length = 334 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 17/338 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I D + ++ ++ + + +L Sbjct: 1 MMTEPNFWDDQNKAQDIIDKNNALKAITMGYHDLDNEVEDMFATTELLQEEYDEDMKAEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + +K + LL D + ILE+ G GG+E+ + L RMY+R Sbjct: 61 EMNVLAFNDKLDQ-----FELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y +KVE + D+ G K + + G + +K E GVHR+ R+ +ASGR H Sbjct: 116 YCEQNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 175 Query: 199 TSAATVAVLPEA--AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ EI+++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAQEMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N K++ V+ G I I L + Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRQQMDQ 330 >gi|24379740|ref|NP_721695.1| peptide chain release factor 2 [Streptococcus mutans UA159] gi|24377701|gb|AAN59001.1|AE014966_11 putative peptide chain release factor (RF-2) [Streptococcus mutans UA159] Length = 325 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 180/332 (54%), Gaps = 12/332 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + K ++ ++ + + D D Q E Sbjct: 1 MTEPDFWDDNIAAQKTSQELNELKLKYETFNSMQELSDETELLQEMLEED----DSLQGE 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ ++ LL + D + ILEI G+GG+EA + L RMY R+ Sbjct: 57 LEEDLVKLDKIMTSYEMTLLLSEPYDANNAILEIHPGSGGTEAQDWGDMLLRMYTRFGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KV+VL D+ G K + + G+ + +K E GVHR+ R+ +++ R HTS A Sbjct: 117 KGFKVDVLDYQAGDEAGIKSVALSFEGQNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 +V V+PE I+VDI EDI++DT R+ G+GGQ+VN + VR+THIP+GI+V S+ ++ Sbjct: 177 SVEVMPELDDTIEVDIRDEDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPSGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E A + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQMEQEKKAQEVDALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 DHR N + +++ V+ G +D I+ L Sbjct: 294 DHRTNYEVSQVDRVMDGELDGFIDAFLKWRME 325 >gi|294812911|ref|ZP_06771554.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC 27064] gi|326441313|ref|ZP_08216047.1| peptide chain release factor 2 [Streptomyces clavuligerus ATCC 27064] gi|294325510|gb|EFG07153.1| Peptide chain release factor 2 [Streptomyces clavuligerus ATCC 27064] Length = 368 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 165/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDRMRADIAVLEEQAAAPSLWDDPEAAQKITSRLSHLQAELRKTEALRARIDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D++ A+ E+ A+ K + E+E L D++ ++ IRA GG +A Sbjct: 85 LAEAEDDADTLAEAETELAAVRKALDEMEV----RTLLSGEYDEREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + F L RMY R+A + E+ +S ++ G K + + + E G HR+ Sbjct: 141 SDFAERLQRMYMRWAERHGYATEIYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP V+I ++R+D RASG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQSDHVEIDETELRVDVYRASGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V +E+SQ QN+ AM VL+A+L + R+ A + G Sbjct: 261 RITHIPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQARMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + + VL G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEFEVGNPQAVLDGEIDGFLEAAIRWRRRQ 366 >gi|330817652|ref|YP_004361357.1| peptide chain release factor 2 [Burkholderia gladioli BSR3] gi|327370045|gb|AEA61401.1| peptide chain release factor 2 [Burkholderia gladioli BSR3] Length = 299 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 ++ ++ D ++ QDL + + N + + ++ I + + + Sbjct: 1 MTTLTTLDGDLRDAQDLFELAREENDEDTLLASEGEAAELEKRVAE-----IEFRRMFSN 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 56 PADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKTEVLEESDGDVAGIKNATI 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 ++G + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ D+RI Sbjct: 116 KVTGDYAYGFLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPADLRI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 176 DTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEMR 235 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K +G G +IR+Y Q R+ D R N+ + VL G +DD I Sbjct: 236 KRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLDDFIG 292 Query: 342 PLLTA 346 L Sbjct: 293 ASLKQ 297 >gi|302820696|ref|XP_002992014.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii] gi|300140136|gb|EFJ06863.1| hypothetical protein SELMODRAFT_134701 [Selaginella moellendorffii] Length = 382 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 94/351 (26%), Positives = 169/351 (48%), Gaps = 5/351 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L + + A++E + S+ + K + + ++ I ++++Y + + D Sbjct: 26 LLDSADLEQQEAVLADLENQASDPAFWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDA 85 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ ++E I + L T D + + I AG GG Sbjct: 86 QCIVELLEEMESPDAALKLEAAETVSWITAAMDRFELNKLLSGTYDKEGARITITAGAGG 145 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 ++A + L RMY+R+A +K V+ SS ++ G K I GR + + E G Sbjct: 146 TDAQDWAEMLLRMYQRWATRSGFKSTVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGT 205 Query: 183 HRVQRVPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HR+ R + G TS A V V+P E +EI+V+IP D+ I T R+ G GGQ+VN Sbjct: 206 HRLVRQSPFNSKGLRQTSFAGVEVMPLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKV 265 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVR+THIPTGI + S E+SQ QN+++A+ +L+++L + + A E R + Sbjct: 266 ETAVRVTHIPTGIALRCSEERSQLQNKIKAIALLKSKLLVILEDQRAAEIKEIR-GDVVK 324 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + ++IR Y F + + D R N+ + ++ G ++ ++ L + Q+ Sbjct: 325 AEWGQQIRNYVFHPYKLVKDLRTNVETSDISGIMDGNLEPLLTAYLMSKQS 375 >gi|149924687|ref|ZP_01913037.1| peptide chain release factor 2 [Plesiocystis pacifica SIR-1] gi|149814444|gb|EDM74035.1| peptide chain release factor 2 [Plesiocystis pacifica SIR-1] Length = 354 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 99/346 (28%), Positives = 175/346 (50%), Gaps = 18/346 (5%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R E E+ + + K+ E + + ++ +I Q + ++L+ + + Sbjct: 12 KRERLEEYEIATGDPSFWEDNERAQKILREQSTLKKLVEQIDDVQQTIDDGRELYELGRE 71 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + I + + L ++ + + T D+ S +L I AG GG ++ + Sbjct: 72 ESDTESIVEA-----WENLGQADALLGKLEFRRMLSGTHDEDSALLSINAGAGGVDSQDW 126 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R+ + + V+VL + D G + I G + ++ E GVHR+ R+ Sbjct: 127 AEMLLRMYQRWGERQGFDVKVLDIQEGDQAGIRGADLAIEGDYAYGWLRSEIGVHRLVRI 186 Query: 189 PATEASGRVHTSAATVAVLP---EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 ++ R TS A++ VLP + + ++++ D+R+D RASG+GGQHVN T+SAVR Sbjct: 187 SPFDSQARRQTSFASIMVLPDLGDGKDFEIEVNPADLRVDKYRASGAGGQHVNKTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +TH PTGI+V E+SQH+N AM++L+A+L+D+E++R ++E SA K I G Sbjct: 247 LTHEPTGIVVACQMERSQHKNMATAMRMLKAKLWDLEQQRRSDEISALEGDKKAIEWG-- 304 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y ++ DHR L ++ VL G + + L Sbjct: 305 -SQIRSYVIHPYQQVNDHRTELKQGNVDAVLDGDLGSYMEAFLLMQ 349 >gi|262377202|ref|ZP_06070427.1| peptide chain release factor 2 [Acinetobacter lwoffii SH145] gi|262307940|gb|EEY89078.1| peptide chain release factor 2 [Acinetobacter lwoffii SH145] Length = 310 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 161/316 (50%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +++ + + ++ Q L + + + +S + D+ A E Sbjct: 1 MAKEKGELENVLNVLDRLSTQLEDAQALLDLAVEADDESLLEDVQ-----AELSTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C LEI+AG+GG+EA + L RMY R+ +K EV+ SD Sbjct: 56 AKLEFRRMFNNPMDPNPCYLEIQAGSGGTEAQDWASMLLRMYLRWIERHGFKAEVMEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V V PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFVSPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +++I D+R DT RASG+GGQH+N TDSAVR+TH PTGI+V +++SQH NR A K Sbjct: 176 EIEINPSDVRTDTYRASGAGGQHINKTDSAVRLTHAPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E + + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMSKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDKFIEASLKQ 308 >gi|293189308|ref|ZP_06608031.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309] gi|292821771|gb|EFF80707.1| peptide chain release factor 2 [Actinomyces odontolyticus F0309] Length = 373 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 96/349 (27%), Positives = 166/349 (47%), Gaps = 5/349 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ + AE+ + + D +A+S S++ Q + DL ++ Sbjct: 26 DKLREQIAELNEKAAAPDLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + E A +++R+ ++ L D+++ ++ IR+G GG +AA F Sbjct: 86 AEDPDEGADILAEAEADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +V+ +S ++ G K + + + E+G HR+ R+ Sbjct: 146 EILLRMYLRWAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRIS 205 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++IP ++++D R+SG GGQ VNTTDSAVR+TH Sbjct: 206 PFDNQGRRQTSFAAVEVIPLIETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTH 265 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V+ EKSQ QNR A++VL++RL + + ++ S +++R Sbjct: 266 IPTGIVVSMQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAKKKELAGDVKAS--WGDQMR 323 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +Y + + D R + V G ID IN + + + + Sbjct: 324 SYVLQPYQMVKDLRTEYESGNPQSVFDGDIDGFINAGIRWRKNEQKAAQ 372 >gi|194468150|ref|ZP_03074136.1| peptide chain release factor 2 [Lactobacillus reuteri 100-23] gi|194453003|gb|EDX41901.1| peptide chain release factor 2 [Lactobacillus reuteri 100-23] Length = 332 Score = 211 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 112/334 (33%), Positives = 178/334 (53%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + + + A + + K + + + DL T I + + DL + Sbjct: 1 MAQPDFWNDNEQAQKVIAENNILKEKRDTFVNLRDQIGDLETSIELLTVEPDD-DLQRDF 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ K + LE LL + D K+ ILEI G GG+EA + L RMY R+ Sbjct: 60 EVSFTKTQKALEQYRLTQLLDGEYDA-KNAILEIHPGAGGTEAQDWGEMLLRMYVRWGEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + VE S D+ G K + I G F ++ E GVHR+ R+ +A+GR HTS A Sbjct: 119 HGFSVETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE ++VDI D+R+DT R+SG+GGQH+N +SAVRITHIPTGI+ + +E+ Sbjct: 179 SVDVMPELDDSVEVDIDPSDLRVDTFRSSGAGGQHINKIESAVRITHIPTGIVTSSQAER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR+ AM +L+++LY++E ++ A +R+ Q IG G +IR+Y F + Sbjct: 239 SQLQNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWG---SQIRSYVFHPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 D+R + + V+ G +D I+ L ++ Sbjct: 296 DNRTGYETHNGQAVMDGDLDPFIDAFLQWKLSQK 329 >gi|121612135|ref|YP_001001104.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 81-176] gi|167005998|ref|ZP_02271756.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 81-176] gi|166223626|sp|A1W163|RF2_CAMJJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|87249819|gb|EAQ72778.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 81-176] Length = 365 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 184/344 (53%), Gaps = 8/344 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDANELFDLA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 NS+++ L + ++ + + +L +D K+ I+ I G GG+E+ + Sbjct: 87 NSENDTETLEALFND--ASKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 145 SILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTS 204 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 PTGI+V +++SQH+N+ A K+L++RLY++E + + + K +IG G +IR Sbjct: 265 FPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 322 SYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|302759765|ref|XP_002963305.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii] gi|300168573|gb|EFJ35176.1| hypothetical protein SELMODRAFT_405087 [Selaginella moellendorffii] Length = 927 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 154/336 (45%), Positives = 222/336 (66%), Gaps = 10/336 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + K++ +++R A + + E D IK+ +E + + I K++E Sbjct: 16 ILRILEKRMISIEDRHACLSKALLEPGIASDELIKMNKELRKLDYSVDMIKALRAKEKEV 75 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L ++ + D E+R LA E+ +E+R+ ++++ L+PKD D + G Sbjct: 76 IGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEADSR--------G 127 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG EA++F DLF+MYE+Y A W+ EVLS + D GYKE A ISG GV+ +KFE Sbjct: 128 AGGDEASIFASDLFKMYEKYTANNSWRFEVLSITTTDTRGYKEASAVISGDGVYGALKFE 187 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE +GR+HTS A+VA+LPEA E+DV+I ++I+IDT RA G+GGQHVNT Sbjct: 188 SGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGGAGGQHVNT 247 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH PTGI+V E+SQH+N+ +A+ +L ARLY++ER R A RS R+ QIG Sbjct: 248 TCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAAASRSELRQDQIG 307 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 S DRSERIRTYNF QGR+TDH++ +T + +E +++G Sbjct: 308 SSDRSERIRTYNFPQGRVTDHQVGVTQHAIEQIMEG 343 >gi|88607366|ref|YP_505078.1| peptide chain release factor 2, programmed frameshift [Anaplasma phagocytophilum HZ] gi|88598429|gb|ABD43899.1| peptide chain release factor 2 [Anaplasma phagocytophilum HZ] Length = 376 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 176/343 (51%), Gaps = 17/343 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L++ ++L S D K L E + +S +++ + +++ ++ +L +I D Sbjct: 30 LESTLESLDLECSSPSLWDDAEKAKSLLSERSRVSAVLTSFRVLEKEHKDLAELAEMISD 89 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + A + ++ ++ + D SC L IR+G GG+E++ + Sbjct: 90 SDD-----RDFLATINAELQSLKLRISQKKTECMFSHEADANSCFLTIRSGAGGTESSDW 144 Query: 129 VGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 V L RMY ++A ++ VE + S D ++ G K + I G G + + ESG+HR+ R Sbjct: 145 VCMLLRMYTKWAESFHEFTVETVDSVDGEETGLKAVTVKICGIGAYGWARTESGIHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIP-LEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + + + HTS A+V V P +D+RIDT RASG+GGQHVN T+SAVRI Sbjct: 205 ISPFDHAAKRHTSFASVEVSPVVDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVRI 264 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 THIP+G++V + +SQHQNR A +L++RLY++E + + + K +IG G Sbjct: 265 THIPSGMVVQCQTSRSQHQNRAEAYSLLKSRLYEMELQEKEKRMAQDHQNKCEIGWG--- 321 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R + D R ++ V+ G +D I L Sbjct: 322 HQIRSYVMHPYRMVKDLRTGHETGNVDAVMNGDLDAFITAALM 364 >gi|299782886|gb|ADJ40884.1| Peptide chain release factor RF2 [Lactobacillus fermentum CECT 5716] Length = 332 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 105/334 (31%), Positives = 172/334 (51%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ D + E+ AA++ + + + + + ++L ++ + + E Sbjct: 1 MTAPDFWDDNQRAQEKVAALNELKKRRDNFLTLQDQVEELALTAEMLQAEPDPE--LKAE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++E L D ILEI G GG+EA + L RMY R+A Sbjct: 59 LDDNFPGVQEHLRAYRLEQLLDGPYDQSDAILEIHPGAGGTEAQDWGEMLLRMYMRWANQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + VE + ++ G K + I G + + E GVHR+ R+ +++ R HTS A Sbjct: 119 HGFAVETANYEAGEEAGIKSVTLLIKGHNAYGYLHPEKGVHRLVRISPFDSAARRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+P I+V+I D+R+DT RASG+GGQH+N T+SAVRITH+PTGI+ + +E+ Sbjct: 179 SVDVMPILDESIEVEIDPSDLRVDTFRASGAGGQHINKTESAVRITHLPTGIVTSSQAER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR+ AM +L+++LY++E ++ A ER+ Q IG G +IR+Y F + Sbjct: 239 SQLQNRITAMNMLKSKLYELEEEKKAKERAQIEGEQREIGWG---SQIRSYVFHPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 D R + + V+ G +D IN L + A+ Sbjct: 296 DARTGYETHDVIGVMDGDLDPFINAYLQWNLAQK 329 >gi|325679774|ref|ZP_08159348.1| peptide chain release factor 2 [Ruminococcus albus 8] gi|324108589|gb|EGC02831.1| peptide chain release factor 2 [Ruminococcus albus 8] Length = 378 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 164/343 (47%), Gaps = 5/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + + E+ + +E D K + K+ Y++ D+ +I Sbjct: 28 DIENAAEKIEELHEKAAEPGFWDDPEKSQVVLQQTRNLEGKVERYNKFNGAADDIEVMIE 87 Query: 68 DH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + + E+ A +++ + + L D + IL AG GG+EA Sbjct: 88 MAGEEDEDTQAELVEEIKAELDKLKADLDAASLETLLTGEYDHSNAILNFHAGAGGTEAQ 147 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY ++A + +++ + D G K I G + +K ESG+HR+ Sbjct: 148 DWTEMLIRMYTKWADSHGFNAKIMDILEGGDAGIKSCSMFIEGENAYGYLKSESGIHRLV 207 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ ++SG HTS + V V+PE I+V+I EDI ++ RASG+GGQH+N T SAVR Sbjct: 208 RISPFDSSGSRHTSFSAVEVMPELDDNIEVEIRPEDIEMEVYRASGAGGQHINKTSSAVR 267 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H PTGI+ +++SQ QNR AMK+L+A+L +++ + + + +Q Sbjct: 268 LIHKPTGIVTACQTQRSQFQNRDYAMKMLKAKLIEIKEREHLEKIEDIKGVQ-KEIAWGS 326 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + D R ++ V+ G +D IN L A Sbjct: 327 QIRSYVFMPYTLVKDLRTGYEYNNVKAVMDGDLDGFINAYLKA 369 >gi|289551384|ref|YP_003472288.1| peptide chain release factor 2 [Staphylococcus lugdunensis HKU09-01] gi|289180915|gb|ADC88160.1| peptide chain release factor 2 [Staphylococcus lugdunensis HKU09-01] Length = 334 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 109/338 (32%), Positives = 170/338 (50%), Gaps = 17/338 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I D + ++ ++ + + +L Sbjct: 1 MMTEPNFWDDQNKAQDIIDKNNALKAITMGYHDLDNEVEDMFATTELLQEEYDEDMKAEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + +K + LL D + ILE+ G GG+E+ + L RMY+R Sbjct: 61 EMDVLAFNDKLDQ-----FELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y +KVE + D+ G K + + G + +K E GVHR+ R+ +ASGR H Sbjct: 116 YCEQNGFKVETVDYLPGDEAGIKSVTLLVKGHNAYGYLKAEKGVHRLVRISPFDASGRRH 175 Query: 199 TSAATVAVLPEA--AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ EI+++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPDFNNNEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQAQEMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N K++ V+ G I I L + Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRQQMDQ 330 >gi|284989796|ref|YP_003408350.1| peptide chain release factor 2 [Geodermatophilus obscurus DSM 43160] gi|284063041|gb|ADB73979.1| peptide chain release factor 2 [Geodermatophilus obscurus DSM 43160] Length = 370 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 156/346 (45%), Gaps = 8/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ AE+E + S + + +S + + ++ + D+ + Sbjct: 24 DVDRLRREVAELEQQASAPDLWNDVEAAQALTSKLSYLQGDLRRVEELRSRLDDVGLLHE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +S+ A+ E E L D + ++ IR+ GG +AA Sbjct: 84 MAVEESDEATAAEAERELASLRQAIDEL--EVRTLLSGEYDSREALVTIRSEAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A ++ VE+ S ++ G K + + + E G HR+ R Sbjct: 142 FAEMLMRMYLRWAERHRYPVELYDVSYAEEAGIKSATFAVKQPYAYGTLSVEQGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP VDIP +IRID R+SG GGQ VNTTDSAVRI Sbjct: 202 ISPFDNQGRRQTSFAGVEVLPVVEQTDHVDIPENEIRIDVFRSSGPGGQSVNTTDSAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +EKSQ QNR AM+VL+ARL ++ E A R G+ + Sbjct: 262 THLPTGIVVSCQNEKSQIQNRAAAMRVLQARLLARRQEEQRAEMDALRGEGSSWGN---Q 318 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R VL G ID I + + + Sbjct: 319 MRSYVLHPYQMVKDLRTEQETGNTSAVLDGDIDPFIEAGIRWRRQQ 364 >gi|307155327|ref|YP_003890711.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822] gi|306985555|gb|ADN17436.1| hypothetical protein Cyan7822_5564 [Cyanothece sp. PCC 7822] Length = 370 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 168/345 (48%), Gaps = 11/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + ++E ++ D+ ++ + S + +Y Q + + +D ++ Sbjct: 25 DLPTLGAKIKDLEQVAAQPEFWDSPDMAQTTLQELNELKSALELYQQWQTQLEDAKAIVE 84 Query: 68 --DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D+ + + AQ + + E+ E + D K +L I AG GG++A Sbjct: 85 LLELEEDTSLLEEAQTNLEQLNHELERWELQQL----LSGLYDAKGAVLTINAGAGGTDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ + +KV + S+ D+ G K I GR + +K E G HR+ Sbjct: 141 QDWAEMLLRMYTRWGEKQGYKVHLAEISEGDEAGLKSATLEIEGRYAYGYLKGEKGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 R+ A+G+ TS A V V+P ++V+IP +D+ I T R+ G GGQ+VN ++A Sbjct: 201 VRISPFNANGKRQTSFAGVEVMPNLGVEAVNVEIPEKDLEITTSRSGGKGGQNVNKVETA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ HIPTG+ V + E+SQ QN+ +A+ +L+A+L + ++ A E + R + Sbjct: 261 VRVVHIPTGLAVRCTQERSQLQNKEKALALLKAKLLVILTEQRAKEIAQIRGDMVE-AAW 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R N+ + V+ G ++ I L Sbjct: 320 GNQIRNYVFHPYQMVKDLRTNVETSDVGAVMDGDLNGFIEAYLRQ 364 >gi|15605186|ref|NP_219972.1| peptide chain release factor 2 [Chlamydia trachomatis D/UW-3/CX] gi|76789195|ref|YP_328281.1| peptide chain release factor 2 [Chlamydia trachomatis A/HAR-13] gi|7388051|sp|O84465|RF2_CHLTR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|123606855|sp|Q3KLN9|RF2_CHLTA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|3328893|gb|AAC68059.1| Peptide Chain Release Factor 2 [Chlamydia trachomatis D/UW-3/CX] gi|76167725|gb|AAX50733.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis A/HAR-13] Length = 369 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D ++ + I+ + ++S +++ K + + + D Sbjct: 27 EGKENELKELEQQAVQDGFWDDVVRAGKISERIARLKQQLSEFNELKNKVSAIQFFLEDE 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 87 ESSKDLEMQKELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWV 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A+ W++EV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 145 EMLLRMYMRWASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 205 PFDSNAKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 265 FPTGIVVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 321 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 322 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 365 >gi|254437327|ref|ZP_05050821.1| peptide chain release factor 2 [Octadecabacter antarcticus 307] gi|198252773|gb|EDY77087.1| peptide chain release factor 2 [Octadecabacter antarcticus 307] Length = 375 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 113/335 (33%), Positives = 165/335 (49%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I+ Y+ KQE D +I + + Sbjct: 31 RLEEFNARVEDPTLWDDPEAAQKLMRDRQSLVDAIASYEVIKQELSDHIELIEMGEMEDD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 E K + + L D LEI +G GG+EA + L R Sbjct: 91 --SDIVTEAEEALKVLAAKAAKKELEALLNGEADANDTFLEINSGAGGTEACDWAAMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KV++ S S ++ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYIRWAERKGYKVDLQSESAGEEVGIKSASYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPSDIRIDTYRSSGAGGQHVNTTDSAVRITHAPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQIELDKRSALVNEVHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D + L Sbjct: 328 YQMVKDLRTRHETSDTQGVLDGDLDAFMGATLAMD 362 >gi|171910508|ref|ZP_02925978.1| peptide chain release factor 2 [Verrucomicrobium spinosum DSM 4136] Length = 359 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 91/347 (26%), Positives = 170/347 (48%), Gaps = 16/347 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVIG 67 LK+ +E ++ D + + ++ + ++I ++ ++ +D L + Sbjct: 12 KLKSDLETLEDELARPEFWDNQERARKTIDTVNNLKNRILPLEELERRLEDFFVLGEIAQ 71 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N + ++ + + + ++ +L D K + I G GG+E+ Sbjct: 72 HENDLASWTEVEKEYH-----AMEKALSDFELAMLLTGELDKKGAFVTIHCGAGGTESCD 126 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY+R+ +K E++ + ++ G + V ++G F ++ E GVHR+ R Sbjct: 127 WADMLLRMYQRWCERSGYKTEMVDFAPGEEVGVRSAVFRVTGDYAFGKLNCERGVHRLVR 186 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ R HTS A+V V PE +I +++ DI+ +T R+ G GGQ+VN ++AVR+ Sbjct: 187 ISPFDSAKRRHTSFASVDVTPEVDEDIGIELNEADIKFETYRSGGKGGQNVNKVETAVRL 246 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDRS 303 H PTGI+V ++SQ +NR AM +L+A+LY +E+ K+ ER K + G Sbjct: 247 IHEPTGIIVNCQVQRSQGKNREMAMNMLKAKLYQLEQDKKKTEMERQYGEKGDVAWG--- 303 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y F + + DHR + V+ G +D I L +A Sbjct: 304 SQIRSYVFQPYQMVKDHRTGEKTGNVGNVMDGDLDAFIEAKLRGRKA 350 >gi|304439754|ref|ZP_07399652.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371741|gb|EFM25349.1| peptide chain release factor RF2 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 368 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 118/346 (34%), Positives = 173/346 (50%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I +K + ++ + E D K +E+ + I + + +DL Sbjct: 27 DIDGMKAKLRDLNDKQMEEGFWDDTESAQKTIKEFNHYNRKIENLKSLTDEISSLKDLLE 86 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ S +D ++ + + L D DD IL+I AG GG+E Sbjct: 87 IMEMEGDYSSYKDFK-----DDLIKLEKHAEDFKIATLLNDKYDDNDVILQIHAGAGGTE 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY RY + + E+L D+ G K I G + +K E GVHR Sbjct: 142 AQDWASMLLRMYTRYCEQKGFSAEILDLQKEDEAGIKSATLLIKGDSCYGYLKGEKGVHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS ++V V PE DVDI ED++IDT R+SG+GGQHVNTTDSA Sbjct: 202 LVRISPFDSNKRRHTSFSSVDVYPELEDVEDVDIKPEDLKIDTYRSSGAGGQHVNTTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARL--YDVERKRMANERSANRKLQIGSG 300 VRITHIPTG++V +E+SQ QNR AMK+L+A+L E ++ A E + QI G Sbjct: 262 VRITHIPTGVVVQCQNERSQIQNRETAMKLLKAKLISLAQEEQKEAIEDLSGNYSQIAWG 321 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N + +E V+ G +D IN L Sbjct: 322 ---SQIRSYVFQPYTMVKDHRTNEEIGDVESVMDGNLDPFINAYLQ 364 >gi|172039100|ref|YP_001805601.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142] gi|171700554|gb|ACB53535.1| peptide chain release factor 2 [Cyanothece sp. ATCC 51142] Length = 358 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 97/344 (28%), Positives = 163/344 (47%), Gaps = 7/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK +E ++ D ++ + S++ Y + + +D + Sbjct: 13 DLPALKAAIKNLENTAAQPQFWDDPETAQTTLQELNDLKSQLEQYQRWCHQLEDTKAIAE 72 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + E ++ + L D K IL I AG GG++A Sbjct: 73 LLELEDDT--TLRQEAQENITQLNHNLDRWELQQLLSGIYDTKGAILTINAGAGGTDAQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KV++ S+ D+ G K I GR F +K E G HR+ R Sbjct: 131 WAQMLLRMYTRWGEQQGYKVDLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVR 190 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A V V+P E ++ V+IP +D+ I T R+ G GGQ+VN ++AVR Sbjct: 191 ISPFNANGKRQTSFAGVEVMPALEEDDLKVEIPDKDLEISTSRSGGKGGQNVNKVETAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + HIPTGI V + E+SQ QN+ +A+ +L+A+L + +++ A E + R + Sbjct: 251 VVHIPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQEIAEIRGDMV-DAAWGN 309 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y F + + D R N+ + V+ GY+D I L Sbjct: 310 QIRNYVFHPYQMVKDLRTNIETTDITGVMDGYLDPFIEAYLRYD 353 >gi|85374178|ref|YP_458240.1| protein chain release factor B [Erythrobacter litoralis HTCC2594] gi|84787261|gb|ABC63443.1| protein chain release factor B [Erythrobacter litoralis HTCC2594] Length = 375 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 162/342 (47%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + + ++ E + + + + + + + Sbjct: 30 RRLDELNARVQDPDLWNDPKEAQAISREQKTLETAVKTVREIGSEMADAIEFVELGEAEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + +++ ++ L D +EI AG GG+E+ + Sbjct: 90 DEDVVKEGLASLQKLADRADA-----DKVQALLSGEADGNDTYIEIHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +KVE + D G K + G + K ESGVHR+ R+ Sbjct: 145 MLLRMYARWAERRGFKVETVEYQAGDQAGIKSATLLVKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P I+++I D++IDT RASG+GGQHVNTTDSAVRITH Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDNIEIEINDSDLKIDTYRASGAGGQHVNTTDSAVRITHQ 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +L+ARL++ E S K +IG G +I Sbjct: 265 PTGIVVASQNDRSQHKNRATAMNMLKARLFEREMAEREAAASGEYQEKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R +T + VL G +D I+ L Sbjct: 322 RSYVLQPYQMVKDLRTGVTSSSPDDVLDGALDPYISAALAQR 363 >gi|315638344|ref|ZP_07893523.1| peptide chain release factor RF2 [Campylobacter upsaliensis JV21] gi|315481555|gb|EFU72180.1| peptide chain release factor RF2 [Campylobacter upsaliensis JV21] Length = 370 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 186/347 (53%), Gaps = 14/347 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +L+ + +EIE + ++ + L +E I+ ++ + +L + Sbjct: 27 DELRVKLSEIETQENDPNFWNNAKNAAILGKEKTKITNLLKAYENAFNALNDANELFDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D ++ + ++ + + +L +D+K+ I+ I G GG+E+ Sbjct: 87 NSESDDETLKA-----LFEDAPKLEDSITSLEISMLLSGENDNKNAIVSIHPGAGGTESN 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +KVE L + D+ G K++ + G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRFCEREGFKVETLDFQEGDEAGLKDVSFLVKGENAYGYLKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++GR HTS ++V V PE +I+++I +D+RID RASG+GGQHVN T+SAVR Sbjct: 202 RTSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDLRIDFYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPT I+V +++SQH+N+ A K+LR+RLY++E + ++ K ++G G Sbjct: 262 ITHIPTNIVVQCQNDRSQHKNKATAFKMLRSRLYELELMKQEAAANSGEKSEMGWG---H 318 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F ++ D R N E +L G I +I +L A +A+ Sbjct: 319 QIRSYVLFPYQQVKDTRSNEAFSNAEGILDGDIKKMIEGVLIAMKAQ 365 >gi|260944632|ref|XP_002616614.1| hypothetical protein CLUG_03855 [Clavispora lusitaniae ATCC 42720] gi|238850263|gb|EEQ39727.1| hypothetical protein CLUG_03855 [Clavispora lusitaniae ATCC 42720] Length = 406 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 130/362 (35%), Positives = 206/362 (56%), Gaps = 14/362 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L ++ + F+ +E +MS + + + +++IS ++ K Y Q + L Sbjct: 43 LLQTRVETMTKEFSVLEKQMSSNEF--DQDTVVK-FSSISSVLDKYHTYQQDMENLSSLL 99 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + + D+E+ + A E+ + + + + + LLP +K ILE+R G GGS Sbjct: 100 EIINE-DLDAELVEEANEELKEVVPRVVKASSSLKKRLLPPIVHSNKPAILELRPGVGGS 158 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF DL MY +A W ++LS S + +G E + +I G ++ ++ ESGVH Sbjct: 159 EAALFTQDLLNMYINFANYMSWPYKILSESHSSNGFLNEAIISIDAPGAYNVLRHESGVH 218 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQ 235 RVQR+PATE+ GR+HTS A V VLP+ E + +IRIDTMR+ G GGQ Sbjct: 219 RVQRIPATESKGRIHTSTAAVVVLPKMSDGTEQSLKEDERSFAPGEIRIDTMRSGGKGGQ 278 Query: 236 HVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVRI HIPTG ++V E+SQ +N+ +A +LR+RL +ER++ E+ R Sbjct: 279 HVNTTDSAVRIVHIPTGIMVVQQDERSQPKNKAKAFSILRSRLAQMEREKEIAEQKKLRS 338 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIG 353 Q+ + DRS++IRTYN+ Q R+TDHR N +++ L + G ++++I + + + Sbjct: 339 DQVTTTDRSDKIRTYNYPQNRVTDHRCNYSVHDLPGFMAGPKLEEMIEKMDEHEFEERLQ 398 Query: 354 SA 355 Sbjct: 399 ML 400 >gi|12642654|gb|AAK00335.1|AF320250_8 RF2 [Lactobacillus delbrueckii] Length = 371 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 173/341 (50%), Gaps = 6/341 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ E +M+E D K + + + + K + K++ D T + Sbjct: 27 DNISESIEINEAKMAEPGFWDNQEKAQKLISETNLLKEKRDSFLALKKDLTDEETALELL 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +++ E + + ++ LL DD + ++EI G GG+EA + Sbjct: 87 RLEADADLQKDTEDQLAKLQEEF--HQYELNLLLSGEYDDHNALMEIHPGAGGTEAMDWG 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY+RY R K EV + D+ G K + ISG+ + +K E GVHR+ R+ Sbjct: 145 NMLLRMYQRYCDSRGLKFEVNNFEPGDEAGLKSVSVRISGKNAYGLLKSEHGVHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V+PE I++DI +D+RID R+SG+GGQH+N T SAVRITH Sbjct: 205 PFDSAKRRHTSFASVEVIPEVDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITH 264 Query: 249 IPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+ + +++SQ QNR AM +RA+L+ +E ++ E++A + Q+ +IR Sbjct: 265 IPTGIVTTSQAQRSQFQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQL-DIAWGSQIR 323 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y F + DHR + V+ G +D I L Sbjct: 324 SYVFHPYSMVKDHRTGYETADVGGVMDGKLDPFIYAYLQWR 364 >gi|302383300|ref|YP_003819123.1| hypothetical protein Bresu_2190 [Brevundimonas subvibrioides ATCC 15264] gi|302193928|gb|ADL01500.1| conserved hypothetical protein [Brevundimonas subvibrioides ATCC 15264] Length = 373 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 104/342 (30%), Positives = 169/342 (49%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+ R+ + + ++ E + + I + + +E L + + Sbjct: 30 RKLDELNARVEDPTLWNDPDAAQAVSRERSRLKTQIDTVLEMESGLEEGVMLADMADEEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 ++ + + ++ R L D LE+ +G GG+E+ + G Sbjct: 90 DEATLEEARAALKAIKDRASR-----AELEALLSGEADGNDAYLEVNSGAGGTESCDWAG 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A ++V++ +S D D G K ++G + +K ESGVHR+ R+ Sbjct: 145 MLLRMYSRWAKAHGYEVQIEASEDGDQAGIKSATILVTGPNAYGWLKSESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +A+ + HTS A+V V P I++DI D+R DT RASGSGGQH+N TDSAVR+THI Sbjct: 205 YDAAAKRHTSFASVGVSPVVDDTIEIDINPADVRTDTYRASGSGGQHINKTDSAVRLTHI 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA--NERSANRKLQIGSGDRSERI 306 PT +V + +SQHQNR +A K+LR RLY++E ++ + A+ K IG G +I Sbjct: 265 PTNTVVACQAGRSQHQNREQAWKMLRGRLYELELQKREAAAQALADAKTDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R + + VL G +D + L A Sbjct: 322 RSYVLQPYQMVKDLRTEVETSDTQGVLDGDLDAFMGAALAAR 363 >gi|302875854|ref|YP_003844487.1| peptide chain release factor 2 [Clostridium cellulovorans 743B] gi|302578711|gb|ADL52723.1| peptide chain release factor 2 [Clostridium cellulovorans 743B] Length = 369 Score = 210 bits (535), Expect = 2e-52, Method: Composition-based stats. Identities = 104/354 (29%), Positives = 176/354 (49%), Gaps = 10/354 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + I L E+E M ES D + A I +I +Y+ + +D+ Sbjct: 21 MGALLDIPKLTLTLEELEGSMQESGFWDNLERAQSVTARAKGIKDRIDLYNNFQSSVEDI 80 Query: 63 HTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +I +DS + E+ + + L L+ D + I+ + +G Sbjct: 81 KVLIEMAIEENDSSLVTEVYNEISTLSDSVENL----RLELMLSGEYDTNNAIVTLHSGV 136 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG++A + L RMY R+ + + VE L D+ G K ++G + +K E Sbjct: 137 GGTDAMDWTEMLLRMYTRWCEKKAFNVETLDLQVGDEAGIKSATLKVTGLYAYGYLKAEK 196 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 G+HR+ R+ A+G+ TS A++ V PE + +V+I D+++DT RASG+GGQHVN Sbjct: 197 GIHRLVRISPFNANGKRQTSFASLEVTPELRQDQNVEINPSDLKVDTYRASGAGGQHVNK 256 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA+RITHIPTGI+V +E+SQ QNR A+ +L+++L +++ +R E+ + + Sbjct: 257 TESAIRITHIPTGIVVQCQNERSQIQNRETALNMLKSKLVELK-ERAHKEKIEDLTGDLK 315 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F + DHR N+ + + V+ G +D I L + + K Sbjct: 316 DMGWGSQIRSYVFHPYTMVKDHRTNIQVNDVYKVMDGELDVFIKGYLHSDENKR 369 >gi|88812905|ref|ZP_01128149.1| hypothetical protein NB231_00155 [Nitrococcus mobilis Nb-231] gi|88789827|gb|EAR20950.1| hypothetical protein NB231_00155 [Nitrococcus mobilis Nb-231] Length = 325 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 168/331 (50%), Gaps = 15/331 (4%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + +L E + ++S + + + +L + N ++ + +L Sbjct: 1 MEQPDVWNDPERAHELNRERVRLQTLVSSLERLTRGLADTAELLELARTENDEATLAELD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + + D+++ L+I+AG+GG+EA + L RMY R+ Sbjct: 61 ADVTGYQSEIEA-----LEFRRMFSGEMDERNAFLDIQAGSGGTEAQDWANMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +++ E++ S+ + G K I G F ++ E+GVHR+ R ++ R HT Sbjct: 116 VEQKRFTAEIIEFSEGEVAGIKSATLRIEGDYAFGWLRTETGVHRLVRKSPFDSGNRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A V V PE ++V+I D+RID RASG+GGQHVN T+SAVRITH+PTGI+ Sbjct: 176 SFAAVFVSPELDDAVEVEINPADLRIDVYRASGAGGQHVNRTESAVRITHMPTGIVTQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +++SQH+N+ AMK LRA+LY++E + + K IG G +IR+Y Q R Sbjct: 236 NDRSQHKNKATAMKQLRAKLYELEMHKRREQADQVEESKADIGWG---SQIRSYVLDQSR 292 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I D R + + + VL G +D I L A Sbjct: 293 IKDLRTGVEIGHTQAVLNGALDPFIEASLKA 323 >gi|297183299|gb|ADI19436.1| protein chain release factor b [uncultured bacterium HF0500_16O16] Length = 361 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 110/352 (31%), Positives = 174/352 (49%), Gaps = 19/352 (5%) Query: 9 ICDLKNR---FAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDL 62 I D++ R A ++ M+ + + + T+E + + + + +L Sbjct: 17 IFDIETRQKTLASLDEEMASNEFWNDRQRAEQVTKEARTLRDLTQPWQELKGRLDDLAEL 76 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + D + ++DL E + + + D DD K +L I +G GG Sbjct: 77 LELSADEDDADTLKDLQIELSDVDETLGE-----LEFFSMLSDEDDPKDALLVIHSGAGG 131 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EAA + L RMY R+ R + E++ D+ G K + G + +K E+GV Sbjct: 132 TEAADWAEMLMRMYGRWIERRGFTSEIMDLQPGDEAGIKGATIEVKGSYAYGYLKAEAGV 191 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+ R HTS A+V V P+ I ++ ED++IDT +A G+GGQHVN T Sbjct: 192 HRLVRISPFDANKRRHTSFASVFVYPDVDSIPDVELRDEDLQIDTYKAGGAGGQHVNKTS 251 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIG 298 SAVRITH+PTGI+V +E+SQ +N+ AMKVL ARLYD ++ + A K I Sbjct: 252 SAVRITHLPTGIVVNCQNERSQLKNKGTAMKVLTARLYDHYKQEEMKKMEAVESTKKAI- 310 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 D +IR+Y F + DHR ++ ++ G +D IN L+A Q Sbjct: 311 --DFGSQIRSYVFQPYTLVKDHRTGHESGNVQAIMDGDLDGFINAFLSAAQT 360 >gi|116671212|ref|YP_832145.1| peptide chain release factor 2 [Arthrobacter sp. FB24] gi|229576665|sp|A0JYC5|RF2_ARTS2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|116611321|gb|ABK04045.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter sp. FB24] Length = 371 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 172/351 (49%), Gaps = 11/351 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--I 66 + +LK AE+ R E D + + +S S++ + DL + + Sbjct: 26 VEELKEDIAELSERAGEPNLWDDPAAAQKITSRLSHRQSELERLNTLVSRIDDLEVLVEL 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 G D++ A E+ +I K +++LE D++ ++ IRAG GG +AA Sbjct: 86 GQDEDDADSMGEAAAELESIRKSLKDLEVVTL----LSGEFDEREAVVTIRAGAGGVDAA 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + ++ +S ++ G K ++ + + E+G HR+ Sbjct: 142 DFAEMLLRMYLRWAERHGYPTTIMDTSYAEEAGLKSATFEVNAPYAYGTLSVEAGTHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P +DIP +IR+D R+SG GGQ VNTTDSAVR Sbjct: 202 RISPFDNQGRRQTSFAAVEVIPLIEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAVR 261 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTG +V+ +EKSQ QNR A++VL++RL +++++ E+ A S + Sbjct: 262 LTHIPTGTVVSMQNEKSQLQNRAAALRVLQSRLLLLKKEQEDAEKKAFAGDVKAS--WGD 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + + + D R + V G IDD I+ + + Sbjct: 320 QMRSYVLNPYQMVKDLRTEHEVGNTSAVFDGEIDDFIDAGIRWRTDNRNAA 370 >gi|262280476|ref|ZP_06058260.1| peptide chain release factor 2 [Acinetobacter calcoaceticus RUH2202] gi|262258254|gb|EEY76988.1| peptide chain release factor 2 [Acinetobacter calcoaceticus RUH2202] Length = 310 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 99/316 (31%), Positives = 162/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + + Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELGAAEDEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI++G+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQSGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+TH PTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHTPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E ++ + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|199597236|ref|ZP_03210667.1| Protein chain release factor B [Lactobacillus rhamnosus HN001] gi|229551742|ref|ZP_04440467.1| peptide chain release factor RF2 [Lactobacillus rhamnosus LMS2-1] gi|258539140|ref|YP_003173639.1| peptide chain release factor B-like protein [Lactobacillus rhamnosus Lc 705] gi|199591752|gb|EDY99827.1| Protein chain release factor B [Lactobacillus rhamnosus HN001] gi|229314873|gb|EEN80846.1| peptide chain release factor RF2 [Lactobacillus rhamnosus LMS2-1] gi|257150816|emb|CAR89788.1| Peptide chain release factor 2 [Lactobacillus rhamnosus Lc 705] Length = 332 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 6/332 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + A + + K + + E +DL + + + Q E Sbjct: 1 MAEPGFWDDSEAAQKVIDANNKLKEKHDRFYALENELEDLEAGLELLQDEPDP--DLQHE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 K+++E ++ LL D + ILEI G GG+E+ + L RMY+R+A Sbjct: 59 EETKLKDLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEV D+ G K + I+G + +K E GVHR+ R+ +++GR HTS A Sbjct: 119 NGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE I+VDI EDI+++ R+SG+GGQH+N T SAVR+ H+PTGI+ + +++ Sbjct: 179 SVDVMPELDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ AM +L+A+LY E + + A + Q +IR+Y F + DH Sbjct: 239 SQFQNKATAMAMLKAKLYQREEEAKKAKAKAIQGEQ-KDVAFGSQIRSYVFHPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R N + V+ G ++ IN L A+ Sbjct: 298 RTNYETGNGQAVMDGDLNPFINAYLQWELAQK 329 >gi|282848898|ref|ZP_06258288.1| peptide chain release factor 2 [Veillonella parvula ATCC 17745] gi|282581403|gb|EFB86796.1| peptide chain release factor 2 [Veillonella parvula ATCC 17745] Length = 330 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 174/332 (52%), Gaps = 14/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ D K E + + + + Y Q + +D + ++ + D + + Sbjct: 1 MSDPTFWDNPDKAREISQEATQLKNAVESYKQLVSDIEDANMML-EMAIDEDDLSMESEI 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +++ LE LLL D + IL AG GG+EA + L RMY R+A Sbjct: 60 KEYVKQIEETLEK-QEVLLLLSGEYDANNAILTFHAGAGGTEAQDWCSMLIRMYLRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +E++ D+ G K + G F +K E GVHR+ R+ +A+ R HTS A Sbjct: 119 SGFSIELMDEQPGDEAGIKSATFLVKGENAFGYLKSEKGVHRLVRISPFDAAARRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 V V+PE + +++I ++D+++DT RASG+GGQH+N TDSAVR+TH PTGI+V +++ Sbjct: 179 AVDVMPEIDDTVEINIDMKDVQVDTYRASGAGGQHINKTDSAVRMTHKPTGIVVQCQTQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS----GDRSERIRTYNFSQG-R 315 SQ QNR +A+++LRA+L+++E ++ A K QIG + +IR+Y F Sbjct: 239 SQMQNREQALRLLRAKLFELELEKQAEL-----KEQIGGTYQAIEWGSQIRSYVFHPYNL 293 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR ++ ++ V+ G +D + L Sbjct: 294 VKDHRTSVETGNVQAVMDGNLDPFVEGFLKKE 325 >gi|228474266|ref|ZP_04059001.1| peptide chain release factor 2 [Staphylococcus hominis SK119] gi|314936947|ref|ZP_07844294.1| peptide chain release factor 2 [Staphylococcus hominis subsp. hominis C80] gi|228271625|gb|EEK12972.1| peptide chain release factor 2 [Staphylococcus hominis SK119] gi|313655566|gb|EFS19311.1| peptide chain release factor 2 [Staphylococcus hominis subsp. hominis C80] Length = 332 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 110/338 (32%), Positives = 172/338 (50%), Gaps = 17/338 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D K + A+ I++ + K ++ ++ + D DL Sbjct: 1 MMTEPDFWDNQNKAQDVIDKNNALKSIVNGYYELNHKLEDMDATWELLQEEYDDEIKEDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q V E+ + LL D + ILE+ G GG+E+ + L RMY+R Sbjct: 61 EQDIVSFREQIDQ-----FELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +K+E + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YGEQQGFKIETIDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+PE +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPEFDNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR N K++ V+ G I I L ++ Sbjct: 293 YSMVKDHRTNEETAKVDAVMDGDIAPFIEAYLRQTMSQ 330 >gi|14195074|sp|P58105|RF2_CHLMU RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 369 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 116/344 (33%), Positives = 173/344 (50%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + + +E + D + I+ + ++ Y++ K + + + D Sbjct: 27 EEKETELKNLEQLSIQDSFWDDVSRAGRISEKIARLKQQLLEYNELKNKINSIKFFLEDE 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E I E + E L L D SC L I AG GG+E+ +V Sbjct: 87 ESSKDLEIQKELEKEFIFCEKKIAE--WETLRLLAGELDRNSCFLSINAGAGGTESCDWV 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY R+A WKVEV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 145 EMLFRMYSRWANSHGWKVEVIDRLDGEVAGIKHITLKLIGEYAYGYAKAESGVHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 205 PFDSNAKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 PTGI+V SE+SQ QNR M +LRAR+Y + +++ NR K +I G + Sbjct: 265 FPTGIVVSCQSERSQIQNREACMNMLRARIYQKLLQERLEKQNTNRKEKKEISWG---SQ 321 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 322 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLADY 365 >gi|262380518|ref|ZP_06073672.1| peptide chain release factor 2 [Acinetobacter radioresistens SH164] gi|262297964|gb|EEY85879.1| peptide chain release factor 2 [Acinetobacter radioresistens SH164] Length = 310 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 162/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ Q + + + + +S + D+ A E Sbjct: 1 MAKEKGELENVINVLEGLSTQLEDAQAMLDLAVEADDESLLADVQ-----AELSSAEEAL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V V PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFVSPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+TH+PTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHMPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E + + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMSKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDKFIEASLKQ 308 >gi|257069075|ref|YP_003155330.1| peptide chain release factor 1 [Brachybacterium faecium DSM 4810] gi|256559893|gb|ACU85740.1| bacterial peptide chain release factor 1 (bRF-1) [Brachybacterium faecium DSM 4810] Length = 378 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 140/366 (38%), Positives = 208/366 (56%), Gaps = 21/366 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYA---AISPIISKISIYDQKKQEEQDLH 63 ++ L+ A ++ M++ + + + ++ + + + + +H Sbjct: 8 DRLAPLRREHAALQEAMADPALHEDAARARRVGRRYAELEGVLDAAARLEATAADLETVH 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D E+ A +E+E LE+ LL P+D DD + ILEI+AG GG Sbjct: 68 ELEALGEGDEELAREAAQLRERLEQEREHLED----LLAPRDPDDARDVILEIKAGAGGE 123 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-------VFSRM 176 E+ALF ++ RMY YA + W+VEVL+S++++ GG+K++ I+ RG V++ + Sbjct: 124 ESALFAAEMLRMYRAYAESQGWRVEVLTSAESELGGFKDVTVAIAARGAGGSGSGVYAHL 183 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD------IPLEDIRIDTMRAS 230 K E+GVHRVQRVP TE+ GR+HTSA V VLPEA E D + ++RID R+S Sbjct: 184 KHEAGVHRVQRVPVTESQGRIHTSAVGVLVLPEADEADESELLAEAMAPANLRIDVFRSS 243 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQ VNTTDSAVRITH+PTG++V +KSQ QNR +A+++LR RL D R + Sbjct: 244 GPGGQSVNTTDSAVRITHLPTGVVVSCQDQKSQLQNREQALRILRTRLLDARRAEQEAQS 303 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 SA R+ Q+ + DRSERIRTYNF + R+ DHR L VL G ++D+I A +A Sbjct: 304 SAARRSQVRTVDRSERIRTYNFPESRVADHRTGYKAGNLAQVLSGDLEDLIASSREAERA 363 Query: 350 KMIGSA 355 + A Sbjct: 364 ARLADA 369 >gi|317124427|ref|YP_004098539.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium calvum DSM 43043] gi|315588515|gb|ADU47812.1| bacterial peptide chain release factor 2 (bRF-2) [Intrasporangium calvum DSM 43043] Length = 370 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 102/352 (28%), Positives = 170/352 (48%), Gaps = 11/352 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E+E + SE D K + +A+S ++ DL T++ Sbjct: 24 DLDVLAKQIVELERQASEPNLWDDQDKAQQVTSALSRANAERDRVLSMDSRINDLETLVE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +S+ + + + + E E+ LL + + ++ IRAG GG +AA Sbjct: 84 MATEESDQDTMDEALRDLAKIKKDLGELEVRTLLSGEYDER--EAVVTIRAGAGGVDAAD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + +V+ +S ++ G K ++ F + E G HR+ R Sbjct: 142 FAEMLMRMYLRWAERHGYPTKVMDTSYAEEAGLKSATFEVNVPYAFGHLNVEGGTHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P ++ ++IP +++ID R+SG GGQ VNTTDSAVR+ Sbjct: 202 ISPFDNQGRRQTSFAAVEVIPLIESDDSIEIPENELKIDVFRSSGPGGQSVNTTDSAVRM 261 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 TH+PTGI+V+ +EKSQ QNR A++VL++RL + E +A +K G Sbjct: 262 THLPTGIVVSMQNEKSQIQNRAAALRVLQSRLLL----QRKAEEAAVKKEMAGDVKASWG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + + + D R + V G ID I + A+ + Sbjct: 318 DQMRSYVLNPYQMVKDLRTDFETGNPAAVFDGDIDGFIEAGIRWQIAQKKAA 369 >gi|299768411|ref|YP_003730437.1| peptide chain release factor 2 [Acinetobacter sp. DR1] gi|298698499|gb|ADI89064.1| peptide chain release factor 2 [Acinetobacter sp. DR1] Length = 310 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 162/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + + Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELSAAEDEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI++G+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQSGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+TH PTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHTPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRARLY++E ++ + K IG G +IR+Y RI D R + Sbjct: 236 LRARLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|302829783|ref|XP_002946458.1| hypothetical protein VOLCADRAFT_103042 [Volvox carteri f. nagariensis] gi|300268204|gb|EFJ52385.1| hypothetical protein VOLCADRAFT_103042 [Volvox carteri f. nagariensis] Length = 400 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 147/358 (41%), Positives = 212/358 (59%), Gaps = 37/358 (10%) Query: 33 IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRE 92 + EY+ + P+ + + ++E +DL ++ D DS +R +A+ E ++++ Sbjct: 26 RDVGREYSLLKPLATAYERLLRVRRELEDLAALLKDP--DSRVRAMAEEEGRELQQQAAG 83 Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSS 152 L + L+P+D D ++ +LE+RAG GG EAALF G+L MY ++A R W +V+ Sbjct: 84 LTRRLLLALVPRDPRDGRAALLEMRAGAGGQEAALFCGELLEMYRKFAMSRGWSWQVVEL 143 Query: 153 SDNDD-GGYKEIVATISGRG-------------------------------VFSRMKFES 180 + ++ GG K +VA ++ V+ + ES Sbjct: 144 TASEVPGGVKHVVAAVADGRGAGRRAGEIGDGGEGYDGGEGNGDQDGDAIGVYGTLLPES 203 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TEA GRVHTS V VLP+A E+DV + ED+RI+TMRASG+GGQHVN T Sbjct: 204 GVHRVQRVPVTEAQGRVHTSTVAVVVLPQADEVDVKLRDEDLRIETMRASGAGGQHVNVT 263 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRITH+PTG++V +E+SQH NR A+K+LRARLYD+E ++ A E R + S Sbjct: 264 DSAVRITHVPTGLVVSCQNERSQHLNRAAALKILRARLYDLEMQKRAKEMDEQRSALVAS 323 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSA 355 DRSERIRTYNF QGR+TDHR +LTL+ L+ VL G + ++ L A + + + Sbjct: 324 ADRSERIRTYNFPQGRVTDHRTHLTLHDLDSVLVGGEGLQRLMGVLRAAREEEALRRL 381 >gi|237802887|ref|YP_002888081.1| peptide chain release factor 2 [Chlamydia trachomatis B/Jali20/OT] gi|237804809|ref|YP_002888963.1| peptide chain release factor 2 [Chlamydia trachomatis B/TZ1A828/OT] gi|231273109|emb|CAX10022.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis B/TZ1A828/OT] gi|231274121|emb|CAX10915.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis B/Jali20/OT] Length = 368 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D ++ + I+ + ++S +++ K + + + D Sbjct: 26 EGKENELKELEQQAVQDGFWDDVVRAGKISERIARLKQQLSEFNELKNKVSAIQFFLEDE 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 86 ESSKDLEMQKELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWV 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A+ W++EV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 144 EMLLRMYMRWASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 204 PFDSNAKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 264 FPTGIVVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 321 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 364 >gi|89100645|ref|ZP_01173503.1| peptide chain release factor 2 [Bacillus sp. NRRL B-14911] gi|89084669|gb|EAR63812.1| peptide chain release factor 2 [Bacillus sp. NRRL B-14911] Length = 328 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 172/333 (51%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M D + + + ++ + + ++L ++ + + + +LA Sbjct: 1 MLHPNFWDDQKAAQVVISESNALKDQVHEFHDLYETFENLELTYELVKEESDEDLQNELA 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ + LL + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 EELTELTKRLAQ-----FELQLLLSEEYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKKGFKVETLDYLPGDEAGIKSVTLAIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + ++DI ED++IDT RASG+GGQH+NTTDSAVRITH+PT ++V Sbjct: 176 SFVSCEVMPEFNDEIEIDIRTEDLKIDTYRASGAGGQHINTTDSAVRITHLPTNVVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ +NR RAMK+L+A+LY + + E R Q IG G +IR+Y F Sbjct: 236 TERSQIKNRERAMKMLQAKLYQKKIEEQEQELLEIRGEQKEIGWG---SQIRSYVFHPYS 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR + ++ V+ G +D IN L + Sbjct: 293 MVKDHRTSTESGNVQGVMDGDLDPFINAYLRSR 325 >gi|325123846|gb|ADY83369.1| peptide chain release factor 2 [Acinetobacter calcoaceticus PHEA-2] Length = 310 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 101/316 (31%), Positives = 163/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + + Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELGAAEDEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI++G+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQSGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRARLY++E ++ + K IG G +IR+Y RI D R + Sbjct: 236 LRARLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|283955061|ref|ZP_06372564.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 414] gi|283793428|gb|EFC32194.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni 414] Length = 366 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/347 (30%), Positives = 185/347 (53%), Gaps = 12/347 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGVIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + +V +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDVPKLEDTITSLEISML----LSGENDSKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + +A K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELLKQQDNANAGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IR+Y F ++ D+R +++ +L G I +I +L A + + Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKVEQ 366 >gi|289525504|emb|CBJ14981.1| bacterial peptide chain release factor 2 [Chlamydia trachomatis Sweden2] Length = 368 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 111/344 (32%), Positives = 176/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D + + I+ + ++S +++ K + + + D Sbjct: 26 EGKENELKELEQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDE 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 86 ESSKDLEMQKELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWV 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A+ W++EV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 144 EMLLRMYMRWASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS +V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 204 PFDSNAKRHTSFVSVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 263 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 264 FPTGIVVSCQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 321 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 364 >gi|260438124|ref|ZP_05791940.1| peptide chain release factor 2 [Butyrivibrio crossotus DSM 2876] gi|292809448|gb|EFF68653.1| peptide chain release factor 2 [Butyrivibrio crossotus DSM 2876] Length = 372 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 105/342 (30%), Positives = 179/342 (52%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + E+E+ M + + ++ + + + Y++ ++ D T + Sbjct: 26 DLDNKAKKIEELEMHMEDQGFWNDPETSQKKLKELKALKDAFTNYNELEKLRDDARTFME 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D E ++ + E + L ++ L + D+ + IL++ AG GG+E+ Sbjct: 86 IA--DEENDTSIIPDIEELVNEFKNLFEKVRISTLLSEEYDNCNAILKLNAGAGGTESCD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + + VE L D D+ G K + I+G + +K E GVHR+ R Sbjct: 144 WASMLLRMYTRWAESKGYTVETLDYLDGDEAGVKSVTIQINGENAYGYLKSERGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS + V+P+ E DVDI +D+RIDT R+SG+GGQH+N T SA+RI Sbjct: 204 ISPFNANGKRQTSFVSCDVMPDIEEDLDVDINEDDLRIDTYRSSGAGGQHINKTSSAIRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +E+SQHQN+ +AM++L+A+LY ++++ A + + R ++ + Sbjct: 264 THIPTGIVVQCQNERSQHQNKDKAMQMLKAKLYLLKQQENAEKEAGIR-GEVKEIGWGNQ 322 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y + DHR N + VL G ID + L Sbjct: 323 IRSYILQPYTLVKDHRTNAESGNAQAVLDGNIDLFLGEYLKW 364 >gi|297194069|ref|ZP_06911467.1| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC 25486] gi|297152097|gb|EDY64812.2| peptide chain release factor 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 340 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 93/335 (27%), Positives = 154/335 (45%), Gaps = 7/335 (2%) Query: 19 IELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 +E + + D + + +S + +++ + + DL + ++ + Sbjct: 8 LEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTEALRGRIDDLEILFELAEAEDDPDAR 67 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 A+ E E + L D++ ++ IRA GG +AA F L RMY R Sbjct: 68 AEAEAELESVRKALDE--MEVRTLLSGEYDEREALVNIRAEAGGVDAADFAEQLQRMYLR 125 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A + EV +S ++ G K + + + E G HR+ R+ + GR Sbjct: 126 WAERHNYGTEVYETSYAEEAGIKSTTFVVKAPYAYGTLSVEQGTHRLVRISPFDNQGRRQ 185 Query: 199 TSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A V VLP ++I ++R+D RASG GGQ VNTTDSAVR+THIPTGI+V Sbjct: 186 TSFAGVEVLPVVEKTDHIEIDESELRVDVYRASGPGGQGVNTTDSAVRLTHIPTGIVVSC 245 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR- 315 +E+SQ QN+ AM VL+A+L + R+ A + G ++R+Y + Sbjct: 246 QNERSQIQNKASAMNVLQAKLLERRRQEEQARMDALKGD--GGNSWGNQMRSYVLHPYQM 303 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + D R + + + VL G ID + + + + Sbjct: 304 VKDLRTDFEVGNPQSVLDGEIDGFLEAGIRWRKQQ 338 >gi|50309221|ref|XP_454617.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|1172907|sp|P41767|RF1M_KLULA RecName: Full=Peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|641909|gb|AAB18362.1| peptide termination factor [Kluyveromyces lactis] gi|49643752|emb|CAG99704.1| KLLA0E14807p [Kluyveromyces lactis] Length = 396 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 142/351 (40%), Positives = 211/351 (60%), Gaps = 17/351 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 N E+E +S+ S D ++ + +A +S I+ S Y ++ + ++L ++ D Sbjct: 45 NELRELEDLLSQGGSFD--LEKQKNFAKLSTIVDSYSKYREEVNQYKELQEILEL---DP 99 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 +R+ A+ ++ A+ ++ + + + LLP DK ILE+R G GGSEA +F DL Sbjct: 100 SLREEAEADIAALLPDLNKTGDSLLNKLLPPHPFADKPSILELRPGVGGSEAMIFTQDLL 159 Query: 134 RMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 MY YA KWK ++S ++N G G E + I G + ++KFE+GVHRVQRVPATE Sbjct: 160 NMYINYANYHKWKWNLISKTENASGSGVLEAILNIDEPGSYDKLKFEAGVHRVQRVPATE 219 Query: 193 ASGRVHTSAATVAVLPEA------AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + GR HTS A V VLP+ + ++IRID MRASG GGQHVNTTDSAVR+ Sbjct: 220 SKGRTHTSTAAVIVLPKMGEESESDAYERTFKPDEIRIDVMRASGKGGQHVNTTDSAVRL 279 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH P+GI+++ E+SQH+N+ +A +LRARL + ER + RK Q+ + DRS++ Sbjct: 280 THYPSGIVISMQEERSQHRNKAKAFAILRARLAEKERLEKEEKERNARKDQVSTTDRSDK 339 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDII---NPLLTAHQAKMI 352 IRTYN+ Q RITDHR TLY +E V++G +DD+I + + +AK + Sbjct: 340 IRTYNYPQNRITDHRCGFTLYDIEGVMKGERLDDVIDAMDAFSSEQKAKQL 390 >gi|258507895|ref|YP_003170646.1| peptide chain release factor 2 [Lactobacillus rhamnosus GG] gi|257147822|emb|CAR86795.1| Peptide chain release factor 2 [Lactobacillus rhamnosus GG] gi|259649221|dbj|BAI41383.1| protein chain release factor B [Lactobacillus rhamnosus GG] Length = 332 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 6/332 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + A + + K + + E +DL + + + Q E Sbjct: 1 MAEPGFWDDSEAAQKVIDANNKLKEKHDRFYALENELEDLEAGLELLQDEPDP--DLQRE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 K+++E ++ LL D + ILEI G GG+E+ + L RMY+R+A Sbjct: 59 EETKLKDLQEKLDQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSMLMRMYQRWADQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KVEV D+ G K + I+G + +K E GVHR+ R+ +++GR HTS A Sbjct: 119 NGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPFDSAGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE I+VDI EDI+++ R+SG+GGQH+N T SAVR+ H+PTGI+ + +++ Sbjct: 179 SVDVMPELDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ AM +L+A+LY E + + A + Q +IR+Y F + DH Sbjct: 239 SQFQNKATAMAMLKAKLYQREEEAKKAKAKAIQGEQ-KDVAFGSQIRSYVFHPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R N + V+ G ++ IN L A+ Sbjct: 298 RTNYETGNGQAVMDGDLNPFINAYLQWELAQK 329 >gi|300783176|ref|YP_003763467.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32] gi|299792690|gb|ADJ43065.1| peptide chain release factor RF-2 [Amycolatopsis mediterranei U32] Length = 357 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 162/345 (46%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ + A++E + S D + + +S ++ +Q DL + Sbjct: 16 DLDALRAQVADLEQQASSPNLWDDPEAAQKVTSQLSHRQGELRRVSDLRQRLDDLGVLYE 75 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + DS A+ E+ + K I LE L DD++ ++ IR+ GG +A Sbjct: 76 LAEAEGDSGSMAEAEAELTDLGKAIDGLEV----RTLLSGEYDDRNAVVTIRSEAGGVDA 131 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V S ++ G K +S V+ + E G HR+ Sbjct: 132 ADFAEMLLRMYLRWAERHGYPTDVYDISYAEEAGIKSATFKVSAPYVYGTLSVEQGTHRL 191 Query: 186 QRVPATEASGRVHTSAAT-VAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + R TS A + VD+ +DIR+D R+SG GGQ VNTTDSAV Sbjct: 192 VRISPFDNQSRRQTSFAHVEVLPEVEEVDHVDVAEKDIRVDVYRSSGPGGQSVNTTDSAV 251 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V +EKSQ QN+ AMKVL+ARL +++ E A R G Sbjct: 252 RITHLPTGIVVSCQNEKSQLQNKAAAMKVLQARLMLRKKEEERAEMDALRD---GGSSWG 308 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 ++R+Y + + D R + + VL G ID ++ + Sbjct: 309 NQMRSYVLHPYQMVKDLRTDYEVGNPTAVLDGDIDGFLDAGIRWR 353 >gi|326436517|gb|EGD82087.1| peptide chain release factor 2 [Salpingoeca sp. ATCC 50818] Length = 449 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 150/360 (41%), Positives = 227/360 (63%), Gaps = 13/360 (3%) Query: 9 ICDLKNRFAEIEL---RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + R +++ R++E ++ ++ T+ A + S + +E ++L + Sbjct: 81 LDRVLERRRDLQTTIVRLAEEGDSESVVEKTQLLAKTDALAEAASAWFDLSKEMEELEHM 140 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D +++ +A E+ + E+E + ++P D DD S I+EIRAGTGG+EA Sbjct: 141 -QRTETDPDLKAMAVSELKEVRARAPEVEQLLLSAMVPHDDADDGSAIVEIRAGTGGTEA 199 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDND----DGGYKEIVATISGRGVFSRMKFESG 181 A+F DL+++Y+ A R W+V+ +++S + D G KE+ +++G+ F +KFESG Sbjct: 200 AIFAKDLYKLYQHLAVRRGWRVQEMTTSYTEGVGSDDGLKEVTFSVNGQDAFGSLKFESG 259 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TEA+GR+HTS ATVAVLP+A+E+ V I DI++DT R+ G+GGQHVNTTD Sbjct: 260 VHRVQRVPITEAAGRIHTSTATVAVLPQASEVTVSIHERDIKMDTYRSGGAGGQHVNTTD 319 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS- 299 SAVR+THIPTGI+V SE+SQH+NR AMK++RAR+Y ER++ ER+ R+ IG Sbjct: 320 SAVRLTHIPTGIVVAVQSERSQHRNRDVAMKMIRARVYQQEREKAQLERAEQRRALIGGT 379 Query: 300 -GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 G RS+RIRTYNF Q R+TDHR+N+ L VL+ +D II+ L + + E Sbjct: 380 PGSRSDRIRTYNFPQDRVTDHRVNVRAS-LSSVLEDDGLDGIISSLRQHDNMERLLHVLE 438 >gi|57238478|ref|YP_179609.1| peptide chain release factor 2 [Campylobacter jejuni RM1221] gi|73621535|sp|Q5HSX6|RF2_CAMJR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|57167282|gb|AAW36061.1| peptide chain release factor 2 [Campylobacter jejuni RM1221] gi|315058910|gb|ADT73239.1| Peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni S3] Length = 365 Score = 210 bits (534), Expect = 3e-52, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 184/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGVIGKEKTKITNLLKNYENAFNALNDASELFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + + K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L + +A+ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLISLKAE 365 >gi|291279507|ref|YP_003496342.1| peptide chain release factor RF-2 [Deferribacter desulfuricans SSM1] gi|290754209|dbj|BAI80586.1| peptide chain release factor RF-2 [Deferribacter desulfuricans SSM1] Length = 375 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 186/346 (53%), Gaps = 17/346 (4%) Query: 10 CDLKNRFAEIELR-MSESPSVDA--YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ + I+ M + + +L +E A++ +S+ +++ L + Sbjct: 29 DEINKKIEAIDKMSMEDPDFWNKKESKQLLKEQASLKKFLSEWEELLTIREDIDVLIELF 88 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++++ E+++ ++ L+ D + I+ I AG GG+EA Sbjct: 89 KEGSEE------VKEDIISNLNELKKRVSDFELKLILNGEHDINNAIVTIHAGAGGTEAC 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 +V LFRMY R+ +K+K E+L D+ G K I + G + +K ESGVHR+ Sbjct: 143 DWVSMLFRMYTRWVERKKYKYEILDMLPGDEAGIKSITFNVIGEYSYGYLKGESGVHRLV 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS A+V VLPE + E D++I+T RASG+GGQHVNTTDSAVR Sbjct: 203 RISPFDSNNRRHTSFASVFVLPEIDDEIDIEINESDLKIETFRASGAGGQHVNTTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PTGI+V +E+SQH+N+ AMK+L+ARLY+ E ++ E+ + K +IG G+ Sbjct: 263 ITHLPTGIVVSCQNERSQHKNKAHAMKILKARLYEYEMEKRNKEKEKLESSKTEIGWGN- 321 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + D R ++ V+ G IDD I L Sbjct: 322 --QIRSYVMHPYKMVKDLRTRYETGNVDAVMDGDIDDFIKTYLLME 365 >gi|168025410|ref|XP_001765227.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683546|gb|EDQ69955.1| predicted protein [Physcomitrella patens subsp. patens] Length = 406 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 90/347 (25%), Positives = 159/347 (45%), Gaps = 5/347 (1%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L+ I + K R A++EL+ S+ D + ++ + + + Q + + ++ Sbjct: 50 LASSDIAEKKARLADLELQASQDTLWDDPDAAQRTLSDLAEVKENLDLLQQFENKVEEAQ 109 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I E I + ++ L D + + I AG GG+ Sbjct: 110 LIIELMGEKEGPDGGLVQEASEIVSWLSNALDKFELAKLLSGPYDRRGARVTISAGAGGT 169 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+A + + V+V+ S ++ G K + + GR + + E G H Sbjct: 170 DAQDWAEMLLRMYSRWAEKQGYTVKVMEKSPGEEAGIKSVTFEVDGRFAYGYLASEKGTH 229 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTD 241 R+ R A G TS A V V+P E +D IP ++ + T RA G GGQ+VN + Sbjct: 230 RLVRQSPFNAKGLRQTSFAGVEVMPIFEEESLDVEIPETELEVTTTRAGGKGGQNVNKVE 289 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +AVRI HIPTGI V + E+SQ N+++ +++L+A+L + ++ A++ R + Sbjct: 290 TAVRIVHIPTGIAVRCTEERSQLANKIKGLRLLKAKLLVIALEQKASDLKEIR-GDVVKA 348 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + ++IR Y F + + D R + V+ G + I L Sbjct: 349 EWGQQIRNYVFHPYKLVKDVRTATETSDVAGVMDGELGSFITAFLRW 395 >gi|188590075|ref|YP_001919915.1| peptide chain release factor 2 [Clostridium botulinum E3 str. Alaska E43] gi|188500356|gb|ACD53492.1| peptide chain release factor 2 [Clostridium botulinum E3 str. Alaska E43] Length = 344 Score = 210 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 109/340 (32%), Positives = 183/340 (53%), Gaps = 13/340 (3%) Query: 12 LKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L+ + +E+E +M E + ++T+E I I ++ K + + L ++ D Sbjct: 9 LEKQLSELEFQMQEDGFWNDTKRAEEITKESKRIKDKIQRVESVQSKLDDIEVLKEMMDD 68 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +S + I+ + E + +E +L D + IL + G GG++A + Sbjct: 69 DDEESAYEIINNIKEIEEEIDNYNME------ILLSGEYDKNNAILTLHVGVGGTDANDW 122 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ + +KVEV+ + D+ G K + + G + +K E G+HR+ R+ Sbjct: 123 TEMLLRMYTRWCEKKNYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRI 182 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A++ VLPE E D+DI EDI++DT RASG+GGQH+N TDSAVRIT Sbjct: 183 SPFNANGKRQTSFASMEVLPELTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRIT 242 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTG++V +E+SQ N+ AM +L+A+L +++ +R E+ + ++ +I Sbjct: 243 HIPTGVVVQCQNERSQFSNKDTAMGMLKAKLIELK-ERAHKEKIEDLTGELKDMGWGSQI 301 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + DHR N+ + + V+ G +D IN L Sbjct: 302 RSYVFHPYNLVKDHRTNVEVSNVTAVMDGDLDLFINSYLK 341 >gi|259419215|ref|ZP_05743132.1| peptide chain release factor 2 [Silicibacter sp. TrichCH4B] gi|259345437|gb|EEW57291.1| peptide chain release factor 2 [Silicibacter sp. TrichCH4B] Length = 374 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 160/339 (47%), Gaps = 6/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ I Y +Q+ D +I + + Sbjct: 31 RLEEFNARVEDPNLWDDPAAAQKLMRDRQSLVDAIDTYKGIRQDLDDSVELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 D + K ++E + L D LEI+AG GG+EA + L R Sbjct: 91 --DEVVKDAEETLKALKEKAAQKELEALLDGETDPNDAFLEIKAGAGGTEACDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A R + V++ + G K I G + +K ESG HR+ R+ Sbjct: 149 MYVRWAESRGFSVDLQEEQAGAEAGIKSATYQIKGHNAYGWLKSESGTHRLVRISPFGK- 207 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G TS A V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 208 GTRETSFAAVGAYPVIDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHEPTGI 267 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R E +A + + G +IR+Y Sbjct: 268 VVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNAEVNALHEAK-GDAGWGNQIRSYVMQP 326 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R N + VL G +D + L A Sbjct: 327 YQMVKDLRTNHETADTKGVLDGDLDGFMAATLAMKVAGK 365 >gi|283457761|ref|YP_003362349.1| protein chain release factor B [Rothia mucilaginosa DY-18] gi|283133764|dbj|BAI64529.1| protein chain release factor B [Rothia mucilaginosa DY-18] Length = 421 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 168/353 (47%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I ++ ++ + + D + +A+S S+++ D+ ++ Sbjct: 71 DIEGIERAIEDLSAQAAAPDLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVE 130 Query: 68 DHNSDSEIRDLAQ-IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ E + EIR E+ L+L D + ++ IR+G GG +AA Sbjct: 131 LAEAEDEETAAELLADAERECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAA 190 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + +VL +S ++ G K + ++ F R+ E+G HR+ Sbjct: 191 DFAEMLLRMYLRWAEKNGYPTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLV 250 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P ++IP +I++D R+SG GGQ VNTTDSAVR Sbjct: 251 RISPFDNQGRRQTSFAAVEVIPLIEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVR 310 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+PTGI+V+ +EKSQ QNR A++VL++RL + +++ ++ S + Sbjct: 311 MTHLPTGIVVSMQNEKSQLQNRAAALRVLQSRLLLLRKEQEDAKKKELAGDIKAS--WGD 368 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ++R+Y + + D R VL G ++ I+ + + S Sbjct: 369 QMRSYVLHPYQMVKDLRTGYEEGNTSNVLDGGLNAFIDAGIRWRASGRAAEES 421 >gi|319891756|ref|YP_004148631.1| Peptide chain release factor 2 [Staphylococcus pseudintermedius HKU10-03] gi|317161452|gb|ADV04995.1| Peptide chain release factor 2 [Staphylococcus pseudintermedius HKU10-03] gi|323465075|gb|ADX77228.1| peptide chain release factor 2 [Staphylococcus pseudintermedius ED99] Length = 329 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 168/337 (49%), Gaps = 17/337 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M++ D + AI +++ + +E + ++ + D DL Sbjct: 1 MMADPQFWDNQERAQTIIDQNNAIKSVVNNYYEVAETLEEMIATYELLQEEYDDEMKDDL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 Q + K + LL D + ILE+ G GG+E+ + L RMY+R Sbjct: 61 EQEVIGFQTKVDQ-----FELQLLLDGEHDANNAILELHPGAGGTESQDWTNMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + +KVE++ D+ G K + + G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEQQGFKVEIVDYQAGDEAGVKSVTMLVKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEIDV--DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+PE + +I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPEFNNEKIEVEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+A+LY +E ++ E +A R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKAKLYQLELEQKEQELAAIRGEQKDIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + DHR N + V+ G I I L Sbjct: 293 YSMVKDHRTNEETGNVNAVMDGEIGPFIEAYLRHQMQ 329 >gi|71893491|ref|YP_278937.1| peptide chain release factor 1 [Mycoplasma hyopneumoniae J] gi|119361562|sp|Q4AAJ5|RF1_MYCHJ RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71851618|gb|AAZ44226.1| peptide chain release factor RF-1 [Mycoplasma hyopneumoniae J] Length = 361 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 152/349 (43%), Positives = 234/349 (67%), Gaps = 8/349 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ +++ + ++ + + +E A+IS II + ++ +D T+ Sbjct: 9 LMKIHQKYQDLKQLLETDQILNDQKQYLQIAKEIASISEIIEVFQKFLDDQKVLEDAKTI 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ LA++E+ + K I E E ++ L+LPKD +D+K I+EIR GG EA Sbjct: 69 LIQE-DDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAAGGDEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +FVGDLF+MY ++A +K KV+VLSSS GG+ +I+ ISG+ ++S++KFESGVHRV Sbjct: 128 NIFVGDLFKMYHKWADSQKAKVKVLSSSLALAGGFSQIIFQISGQKIYSKLKFESGVHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVPATE GR+HTS ATV V+P+ E +++I D++IDT R+SG+GGQ VNTTDSAV Sbjct: 188 QRVPATETMGRIHTSTATVTVMPKIDEKIEIEINPSDLKIDTYRSSGAGGQSVNTTDSAV 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V + E+SQ N+ AM +L++++Y++E ++ ++S RKL GSG RS Sbjct: 248 RITHIPTGIVVTSQDERSQIGNKEIAMGILKSKIYNLELQKQQQKQSDFRKLA-GSGARS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 E+IRTYN+ Q R+TDHRIN + L+ ++QG ++ II LL + ++I Sbjct: 307 EKIRTYNYPQDRLTDHRINFSTS-LKPIIQGSLNPIIEALLAQEKTELI 354 >gi|269795803|ref|YP_003315258.1| peptide chain release factor 2 [Sanguibacter keddieii DSM 10542] gi|269097988|gb|ACZ22424.1| bacterial peptide chain release factor 2 (bRF-2) [Sanguibacter keddieii DSM 10542] Length = 372 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 112/351 (31%), Positives = 168/351 (47%), Gaps = 18/351 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG-- 67 LK R AE+ + S D + A+S +++ + DL ++ Sbjct: 27 EALKIRIAELSDQASAPDLWDDTDAAQKVTTALSQAQTELDRIVNMESRIDDLEVLVEMA 86 Query: 68 ---DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 D D E + AQ ++ I +++ +LE L D + ++ IRAG GG + Sbjct: 87 TEGDGADDVETLEEAQKDLDGIRRDLGDLEV----RTLLSGEWDAREAVVSIRAGAGGVD 142 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA F L RMY R+A + VL +S ++ G K + F + E+G HR Sbjct: 143 AADFAEMLMRMYLRWAERHGYPTAVLDTSYAEEAGLKSATFEVKAPYAFGNLSVEAGTHR 202 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V V+P + VDIP +IR+D R+SG GGQ VNTTDSA Sbjct: 203 LVRISPFDNQGRRQTSFAAVEVIPLIESTDHVDIPDNEIRVDVFRSSGPGGQSVNTTDSA 262 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--G 300 VR+THIPTGI+V+ +EKSQ QNR AM+VL++RL + A +K G Sbjct: 263 VRLTHIPTGIVVSMQNEKSQIQNRAAAMRVLQSRLLL----ERQAQEKAMKKEMAGDVKA 318 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + + D R + V G IDD I + ++K Sbjct: 319 SWGDQMRSYVLQPYQMVKDLRTEHEVGNTSAVFDGEIDDFIEAGIRWRRSK 369 >gi|139438906|ref|ZP_01772366.1| Hypothetical protein COLAER_01370 [Collinsella aerofaciens ATCC 25986] gi|133775617|gb|EBA39437.1| Hypothetical protein COLAER_01370 [Collinsella aerofaciens ATCC 25986] Length = 382 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 166/347 (47%), Gaps = 13/347 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + + R +E+E + D EE A I+ + + + + + Sbjct: 28 LDEKRTRVSELEAKSVAPGFWDDADAARATMEEIARTKEDIAAVDTARGELSDARAALEL 87 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + L + E+ R + +E+ D I+ I+ G GG EA Sbjct: 88 AEEMGDDPDAAALREEAAATAERLARAI-DELELSSWFTGEFDHGDAIVTIKPGQGGLEA 146 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + LF+MY +Y R WKV + + G T+ G+ F ++ E+GVHR+ Sbjct: 147 QDWTFMLFKMYMKYCQRRGWKVTINDCPAAEVIGIDRATFTVEGKDAFGMLRAEAGVHRL 206 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ T+ R T+ A V V+P +ID++I +DIR+D ASG GGQ VNTTDSAV Sbjct: 207 VRISPTDDKRRRQTTFAGVEVIPVLPDDIDIEISPDDIRVDVYHASGPGGQGVNTTDSAV 266 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 R+TH P+GI+V +E+SQ QN+ M++L+ARLY++E ++ A R K IG G+ Sbjct: 267 RVTHFPSGIVVTCQNERSQIQNKAACMQILKARLYEIELEKRAEALDEIRGPKTTIGFGN 326 Query: 302 RSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTA 346 +IR+Y + + D R + +E VL G +D + Sbjct: 327 ---QIRSYVLYPYQMVKDLRSGVETSNVEAVLDDGDLDPFVIGYHRW 370 >gi|310822818|ref|YP_003955176.1| peptide chain release factor 2 [Stigmatella aurantiaca DW4/3-1] gi|309395890|gb|ADO73349.1| Peptide chain release factor 2 [Stigmatella aurantiaca DW4/3-1] Length = 380 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 16/343 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 + ++R + I+ + D K +E + + + + + Q L Sbjct: 31 DLDRKRSRISLIDRDSTLPNFWDDNTKAQALLKEKSTLEASVGAFDKALRGLDDAQTLME 90 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + N ++ ++ + + ++ + +D +C ++I AG GG++ Sbjct: 91 LAREANDEASAQEAEGL-----LPTLEGDIAKLELARMLSGENDRSNCFMDINAGAGGTD 145 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+ R W+VE+ ++ G+K + I G + +K E GVHR Sbjct: 146 SMDWAAMLMRMYTRFCEERGWEVEISDMVAGEEAGFKNVSLHIRGEYAYGYLKAEVGVHR 205 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ R T+ A+V V PE I +DIP +D + +R G+GGQ VN T S Sbjct: 206 LVRISPFDANARRQTAFASVDVYPEVDDSIRIDIPEKDYELKFIRGGGAGGQKVNKTSST 265 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER--SANRKLQIGSG 300 ++ H+PT I++ +E+SQ N+ A K+LRARLY++E K+ ER + +K I G Sbjct: 266 AQLRHLPTNILITCQTERSQSANKDMAFKILRARLYELELKKREAERDAAEAQKKDISFG 325 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 +IR+Y + R + D R + ++ VL G ++ + Sbjct: 326 ---SQIRSYVLAPYRMVKDLRTGVETGNVDAVLDGDLEQFVTA 365 >gi|169794367|ref|YP_001712160.1| peptide chain release factor 2 [Acinetobacter baumannii AYE] gi|184159830|ref|YP_001848169.1| protein chain release factor B [Acinetobacter baumannii ACICU] gi|213159055|ref|YP_002321053.1| peptide chain release factor 2 [Acinetobacter baumannii AB0057] gi|215481924|ref|YP_002324106.1| peptide chain release factor 2 [Acinetobacter baumannii AB307-0294] gi|239503845|ref|ZP_04663155.1| peptide chain release factor 2 [Acinetobacter baumannii AB900] gi|260557921|ref|ZP_05830134.1| peptide chain release factor 2 [Acinetobacter baumannii ATCC 19606] gi|332854818|ref|ZP_08435581.1| peptide chain release factor 2 [Acinetobacter baumannii 6013150] gi|332868948|ref|ZP_08438507.1| peptide chain release factor 2 [Acinetobacter baumannii 6013113] gi|332872826|ref|ZP_08440791.1| peptide chain release factor 2 [Acinetobacter baumannii 6014059] gi|169147294|emb|CAM85155.1| peptide chain release factor 2 [Acinetobacter baumannii AYE] gi|183211424|gb|ACC58822.1| Protein chain release factor B [Acinetobacter baumannii ACICU] gi|213058215|gb|ACJ43117.1| peptide chain release factor 2 [Acinetobacter baumannii AB0057] gi|213988530|gb|ACJ58829.1| peptide chain release factor 2 [Acinetobacter baumannii AB307-0294] gi|260408712|gb|EEX02017.1| peptide chain release factor 2 [Acinetobacter baumannii ATCC 19606] gi|322509742|gb|ADX05196.1| Peptide chain release factor 2 [Acinetobacter baumannii 1656-2] gi|323519757|gb|ADX94138.1| protein chain release factor B [Acinetobacter baumannii TCDC-AB0715] gi|332727820|gb|EGJ59224.1| peptide chain release factor 2 [Acinetobacter baumannii 6013150] gi|332732991|gb|EGJ64193.1| peptide chain release factor 2 [Acinetobacter baumannii 6013113] gi|332738987|gb|EGJ69849.1| peptide chain release factor 2 [Acinetobacter baumannii 6014059] Length = 310 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 163/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + E Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELSTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E ++ + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|222637229|gb|EEE67361.1| hypothetical protein OsJ_24645 [Oryza sativa Japonica Group] Length = 498 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 165/353 (46%), Gaps = 9/353 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + ++S D K E A++ + ++ + + K + ++ T++ Sbjct: 146 LDQLEEEIASLEKKSADSSLWDDPSKAQEILVALTEVKDRVKLLNDLKLQVEEAETIVKL 205 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D + ++ I AG GG++A + Sbjct: 206 TEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINITAGAGGTDAQDW 265 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 266 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQ 325 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P E +D IP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 326 SPFNAKGLRQTSFAGVEVMPLLPEESMDVEIPEEDLEISFTRAGGKGGQNVNKVETAVRM 385 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 386 VHIPTGIAVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 444 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 IR Y F + + D R + V+ G +D I L + +A+E Sbjct: 445 IRNYVFHPYKLVKDVRTACETSDITGVMDGELDTFIRAYLKY----KLSAAAE 493 >gi|220905200|ref|YP_002480512.1| hypothetical protein Ddes_1938 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869499|gb|ACL49834.1| hypothetical protein Ddes_1938 [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 370 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 116/347 (33%), Positives = 179/347 (51%), Gaps = 16/347 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + R IE +S + D LT +E + +++++ + + + + Sbjct: 31 EKRLQAIETEISRPGAWDKPEALTPLLQEKRRLEDEVARLNKLKTCHDDMNEWLALAAES 90 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + LA +K++ L +E ++L +D + ILEI G GG+E+ + Sbjct: 91 EDPEALESLA-----QQQKDLAALLDETELVMLLSAEEDSQDAILEIHPGAGGTESQDWA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+AA +KVE L D+ G K + + G F +K E G+HR+ R+ Sbjct: 146 EMLLRMYTRWAADHDYKVEELDFLPGDEAGVKSVTLRVGGPHAFGFLKSERGIHRLIRIS 205 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++SGR HTS A+V V+P+A +I++D+ D+R+D R+SG GGQ VNTT SAVRITH Sbjct: 206 PFDSSGRRHTSFASVDVIPDAGDDIELDLKEADLRVDIFRSSGPGGQSVNTTSSAVRITH 265 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 IP+GI +EKSQH N+ A++VLRARLY++E ++ R A K I G + Sbjct: 266 IPSGISAQCQNEKSQHHNKETALRVLRARLYNMELEKREAARQAQYAGKDAIAFG---SQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IRTY R + DHR + ++ VL G ID + L + Sbjct: 323 IRTYTLQPYRLVKDHRTGTEVGDVDAVLDGQIDAFQHDYLLHRHEQQ 369 >gi|86152591|ref|ZP_01070796.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843476|gb|EAQ60686.1| peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni HB93-13] Length = 365 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 106/346 (30%), Positives = 184/346 (53%), Gaps = 12/346 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +++ R EIE + + + I + + Y+ D + + Sbjct: 27 ENIQTRLKEIEELENSPSFWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDASGLFDLA 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +D+E + + +E I LE + +D K+ I+ I G GG+E+ Sbjct: 87 NSENDTETLEALFNDAPKLEDTITSLEISML----LSGENDGKNAIVSIHPGAGGTESND 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ +KVE L + ++ G K++ + G + +K E+G+HR+ R Sbjct: 143 WASILYRMYLRFCEREGFKVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS ++V V PE +I+++I +DIRID RASG+GGQHVN T+SAVRI Sbjct: 203 TSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH PTGI+V +++SQH+N+ A K+L++RLY++E + + + K +IG G + Sbjct: 263 THFPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWG---HQ 319 Query: 306 IRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR+Y F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 320 IRSYVLFPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 365 >gi|119358306|ref|YP_912950.1| peptide chain release factor 2 [Chlorobium phaeobacteroides DSM 266] gi|119355655|gb|ABL66526.1| bacterial peptide chain release factor 2 (bRF-2) [Chlorobium phaeobacteroides DSM 266] Length = 363 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 104/343 (30%), Positives = 167/343 (48%), Gaps = 9/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + K + ++E ++ + + +S S +D+ + + + Sbjct: 23 DVDERKEKIDDLEKITADPGFWNDQQEANRTLKELSEHKSWTGAFDKLEAAAKTSGEELT 82 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + E++A I I + + DD + I+ I AG GG+EA Sbjct: 83 IA--DELQDESFADELIASIAAIESGIAAIEFRNMLSGKDDPGNAIITIHAGAGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A + +KV + D G K I G + +K E+GVHR+ R Sbjct: 141 WAEMLYRMYMRWAERKGFKVFTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +++ R HTS A+V PEA ++D+ ED+ + T R+ G GGQ+VN ++AVRI Sbjct: 201 VSPFDSNARRHTSFASVYTYPEAPPDVEIDVRKEDLELSTFRSGGKGGQNVNKVETAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 HIP+GI+V E+SQ QNR RAMK+L A+LY +R+ + +K +I G Sbjct: 261 KHIPSGIVVGCQQERSQFQNRERAMKMLMAQLYQRQREEEDARKREIEGKKKKIEWG--- 317 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI DHR N + +E VL G +D + L+ Sbjct: 318 SQIRSYVLDDRRIKDHRTNYERFDVETVLDGDLDTFMEKYLSE 360 >gi|89068846|ref|ZP_01156229.1| peptide chain release factor 2 [Oceanicola granulosus HTCC2516] gi|89045616|gb|EAR51679.1| peptide chain release factor 2 [Oceanicola granulosus HTCC2516] Length = 374 Score = 210 bits (533), Expect = 4e-52, Method: Composition-based stats. Identities = 121/336 (36%), Positives = 170/336 (50%), Gaps = 10/336 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSD 72 R E R+ + D + ++ I YD +E D +I + D Sbjct: 31 RLEEFNARVEDPTLWDDPAAAQKLMRERQALVDSIETYDGIARELADNVELIELGEMEDD 90 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 SE+ A+ + A+++ + E L D LEI AG GG+EA + L Sbjct: 91 SEVVAEAEAALAALKERAAQKEL----EALLDGEADGNDTFLEINAGAGGTEACDWAQML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R +KVE+ S + G K + ISG + +K ESGVHR+ R+ Sbjct: 147 QRMYVRWAEKRGYKVELQSEEAGTEAGIKSVSYKISGPNAYGWLKSESGVHRLVRISPFG 206 Query: 193 ASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 G TS A+V V P I+++I +IR+DT R+SG+GGQHVNTTDSAVRITH+PT Sbjct: 207 K-GTRETSFASVWVYPVVDDNIEIEINPSEIRLDTYRSSGAGGQHVNTTDSAVRITHLPT 265 Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 GI+VTSSEKSQHQNR AMK L++RLY +E R + +A + + GS +IR+Y Sbjct: 266 GIVVTSSEKSQHQNRDIAMKALKSRLYQMELDRRTADINAAHEAK-GSAGWGNQIRSYVL 324 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + + D R VL G +D + L Sbjct: 325 QPYQMVKDLRTGHETSDTGGVLDGALDGFMAATLAM 360 >gi|15618982|ref|NP_224772.1| peptide chain release factor 2 [Chlamydophila pneumoniae CWL029] gi|7388054|sp|P56906|RF2_CHLPN RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 369 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 167/345 (48%), Gaps = 11/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + +E SE + + I + +I Y + K + + + Sbjct: 25 DLDKKQKELQVLEEESSEENFWQDSVHAGKISEQIVSLRRQIQEYQELKSKIDAIEFFLE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D ++ + ++ + L D SC L I AG GG+E+ Sbjct: 85 DADALEDPA--ICEDLEKEFLFCEKKLAVWETQRLLSGEADKNSCFLTINAGAGGTESCD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V LFRMY R+A +W +EV+ D + G K + SG + K E GVHR+ R Sbjct: 143 WVEMLFRMYSRWATKHQWALEVVDRLDGEVVGIKHVTVKFSGMYAYGYAKAERGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++G+ HTS A+V V PE + ++I D+RIDT R+SG+GGQHVN T+SAVRI Sbjct: 203 ISPFDSNGKRHTSFASVDVFPEIDDQIKIEIRPNDLRIDTFRSSGAGGQHVNVTESAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+P+G++V +E+SQ QNR MK+L+A+LY + ++S +RK +I G Sbjct: 263 THLPSGVVVSCQNERSQIQNRESCMKMLQAKLYQQVLQERLEKQSLDRKDKKEIAWG--- 319 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTA 346 +IR Y F + D R ++ +L G +D+ I L Sbjct: 320 SQIRNYVFQPYTLVKDVRTGHETGNVQAMLDGELLDEFIKAYLAE 364 >gi|299739044|ref|XP_001835016.2| peptide chain release factor 1 [Coprinopsis cinerea okayama7#130] gi|298403596|gb|EAU86782.2| peptide chain release factor 1 [Coprinopsis cinerea okayama7#130] Length = 345 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 143/344 (41%), Positives = 204/344 (59%), Gaps = 13/344 (3%) Query: 19 IELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 I MS+ V ++ P+ + + ++ + + ++ D D +R + Sbjct: 4 ISEDMSDKDDVSRLKQV----KESEPLQEAWDQWKETRKLLDETNALLSDP--DPSMRAM 57 Query: 79 AQIEVLAIEKEIREL-ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 A E A+ ++ L E+ LLLP S +LE+++G GGSE++LF GDL RMY+ Sbjct: 58 ASEESTALNSTLQTLVESTFPSLLLPPSPTAQLSALLELKSGVGGSESSLFAGDLLRMYQ 117 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R A R WK E+ + +D DDGG K+++ I G G + +++ESGVHRVQRVPATE+ GRV Sbjct: 118 RLAVQRGWKAEIAAKNDTDDGGVKDVIMEIKGVGAYDALRWESGVHRVQRVPATESKGRV 177 Query: 198 HTSAATVAVLP----EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 HTSA V VLP + +ED++I+ MRA G+GGQHVN T+SAVR+THIP+GI Sbjct: 178 HTSAVAVLVLPLVEENDTHGEDLFKMEDVKIEVMRARGAGGQHVNRTESAVRLTHIPSGI 237 Query: 254 MVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 V+ E+SQHQNR RA +VLR+RL D + R ER A R+ + DRS++IRTYNF Sbjct: 238 TVSMQDERSQHQNRRRAFQVLRSRLLDQKIHREMAERRATRRNLVSGSDRSDKIRTYNFP 297 Query: 313 QGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 Q R+TDHRI LTL L VL+G ++D I+ + + Sbjct: 298 QERVTDHRIGLTLTNLSSVLEGEGLEDFIDAIQKHQNETAMEEM 341 >gi|72080478|ref|YP_287536.1| peptide chain release factor 1 [Mycoplasma hyopneumoniae 7448] gi|119361561|sp|Q4A8M6|RF1_MYCH7 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|71913602|gb|AAZ53513.1| peptide chain release factor RF-1 [Mycoplasma hyopneumoniae 7448] Length = 361 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 151/349 (43%), Positives = 234/349 (67%), Gaps = 8/349 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + ++ +++ + ++ + + +E A+I+ II + ++ +D T+ Sbjct: 9 LMKIHQKYQDLKQLLETDQILNDQKQYLQIAKEIASITEIIEVFQKFLDDQKVLEDAKTI 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ LA++E+ + K I E E ++ L+LPKD +D+K I+EIR GG EA Sbjct: 69 LIQE-DDPELIQLAKVEIATMSKNIEEYEKKLLILMLPKDKNDEKDVIVEIRGAAGGDEA 127 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +FVGDLF+MY ++A +K KV+VLSSS GG+ +I+ ISG+ ++S++KFESGVHRV Sbjct: 128 NIFVGDLFKMYHKWADSQKAKVKVLSSSLALAGGFSQIIFQISGQKIYSKLKFESGVHRV 187 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVPATE GR+HTS ATV V+P+ E +++I D++IDT R+SG+GGQ VNTTDSAV Sbjct: 188 QRVPATETMGRIHTSTATVTVMPKIDEKIEIEINPSDLKIDTYRSSGAGGQSVNTTDSAV 247 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V + E+SQ N+ AM +L++++Y++E ++ ++S RKL GSG RS Sbjct: 248 RITHIPTGIVVTSQDERSQIGNKEIAMGILKSKIYNLELQKQQQKQSDFRKLA-GSGARS 306 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 E+IRTYN+ Q R+TDHRIN + L+ ++QG ++ II LL + ++I Sbjct: 307 EKIRTYNYPQDRLTDHRINFSTS-LKPIIQGSLNPIIEALLAQEKTELI 354 >gi|238796545|ref|ZP_04640052.1| Peptide chain release factor 2 [Yersinia mollaretii ATCC 43969] gi|238719523|gb|EEQ11332.1| Peptide chain release factor 2 [Yersinia mollaretii ATCC 43969] Length = 303 Score = 209 bits (532), Expect = 4e-52, Method: Composition-based stats. Identities = 104/308 (33%), Positives = 164/308 (53%), Gaps = 12/308 (3%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 I++ I DQ ++ L + + + + + A + ++ + + Sbjct: 2 EEIVTTIDQLDQGMEDVTGLLELAIEADDEETFNEAV-----AELDILDGKLGQLEFRRM 56 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D +C L+++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 FSGEYDSANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESKGFKTEIIEESDGDVAGLKS 116 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLED 221 I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D Sbjct: 117 ATIKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPAD 176 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ Sbjct: 177 LRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEF 236 Query: 281 ERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 EMQKKNADKQVLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDK 293 Query: 339 IINPLLTA 346 I L A Sbjct: 294 FIEASLKA 301 >gi|297735238|emb|CBI17600.3| unnamed protein product [Vitis vinifera] Length = 451 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 5/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E++ ++S D K E A++ + KI + K + +D T++ Sbjct: 101 LQQLEEELAALEMKAADSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKL 160 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I KE+ + + L D + ++ I AG GG++A + Sbjct: 161 TEEMDSIDTGLLEEAANIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDW 220 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 221 ADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQ 280 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS + V V+P E +D IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 281 SPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRI 340 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 341 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 399 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y F + + D R + V+ G ++ I L Sbjct: 400 IRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPFIKAYLK 440 >gi|241998776|ref|XP_002434031.1| protein releasing factor, putative [Ixodes scapularis] gi|215495790|gb|EEC05431.1| protein releasing factor, putative [Ixodes scapularis] Length = 356 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 136/345 (39%), Positives = 209/345 (60%), Gaps = 6/345 (1%) Query: 16 FAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN--SD 72 ++E + + S +LT + + +S I++ + ++ +E + L + D D Sbjct: 6 LKQVEEELEKCSHDSQRTRELTAKMSRLSSIVALVKKINELNREMEGLKDLERDFTRTGD 65 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 ++ +A + + E+++L ++I ++P D D +LE+ AG GG EA LF D+ Sbjct: 66 KDMVSMAVDDQKNCQAELKQLNDQILDQIVPPDPIDTTEVLLEVTAGVGGQEAMLFTKDV 125 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 MY RYA+ + W ++ +D GG + + GR +KFESGVHRVQRVP TE Sbjct: 126 LDMYVRYASWKGWSCRIVDYETSDMGGVRHASLNVGGRDAGKCLKFESGVHRVQRVPQTE 185 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +GR+HTS VAVLP AE+DV + +D+ + T RASG GGQHVNTT+SAV+I HIP+G Sbjct: 186 RAGRIHTSTMAVAVLPLPAEVDVVLNSKDLVMKTKRASGPGGQHVNTTESAVQIQHIPSG 245 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 IMV +S E+SQ QN+ A+K LRA+LY++E + + RKLQ+G+ RSE+IRTYNF Sbjct: 246 IMVESSQERSQLQNKELALKKLRAKLYEIELNKKTSSHVTQRKLQVGTRGRSEKIRTYNF 305 Query: 312 SQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +Q R+TDHRI +T++ +E L G +D +I LL + +++ Sbjct: 306 AQDRVTDHRIPVTVHNVEDFLHGQDNLDSVIRRLLDESRKEILLE 350 >gi|182438348|ref|YP_001826067.1| peptide chain release factor 2 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326778999|ref|ZP_08238264.1| Peptide chain release factor 2 [Streptomyces cf. griseus XylebKG-1] gi|238688991|sp|B1VV08|RF2_STRGG RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|178466864|dbj|BAG21384.1| putative peptide chain release factor 2 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326659332|gb|EGE44178.1| Peptide chain release factor 2 [Streptomyces cf. griseus XylebKG-1] Length = 368 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 93/345 (26%), Positives = 156/345 (45%), Gaps = 7/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDALRADIAALEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKAETLRGRIDDLEVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + A+ E E + L D + ++ IRA GG +AA Sbjct: 85 LAADEGDADAQAEAEAELESVRKALDE--MEVRTLLSGEYDAREALVTIRAEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K EV ++ ++ G K + + + E G HR+ R Sbjct: 143 FAEKLQRMYLRWAEQHNYKTEVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMNALKGD--GGNSWGNQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y + + D R + E V G ID + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEFEMGNPEAVFNGEIDGFVEAGIRWRKQ 365 >gi|50730809|ref|XP_417026.1| PREDICTED: hypothetical protein [Gallus gallus] Length = 455 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 208/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + +++ + ++S + L A +SP+ + + + E Q+L T Sbjct: 83 QKYLETLSKEYQQVDHLLNADSKNEFEQRTLRRRRADLSPVATAFQEIREAESELQELET 142 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + + + + ++ +LA E ++K+I L ++ LL+PK+ D ILE+ AG T Sbjct: 143 MCRELDSRDEKQLLELALEEKETLDKKINTLCRKLFQLLVPKEKYDKSHVILEVTAGRTT 202 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ YA + W ++L+ + GG A ISG V+ +K+E Sbjct: 203 GGDICQQFTKEMFEMYQNYADYKCWTFDILNYVPAEIGGLHHAAAHISGDDVYRHLKYEG 262 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G HRVQR+P T S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 263 GTHRVQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHV 322 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRI H+PTG++V E+SQ N+ A++ LRA+LY ++ ++ + RKLQ Sbjct: 323 NKTDSAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQLSQEQSARKLQ 382 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI+ ++ +L G +D +IN LL + + + Sbjct: 383 LGTRAQSERIRTYNFTQDRVTDHRISYDARNIKEILSGKEELDKLINRLLEFAEMEALTE 442 Query: 355 ASE 357 E Sbjct: 443 YLE 445 >gi|145222895|ref|YP_001133573.1| peptide chain release factor 1 [Mycobacterium gilvum PYR-GCK] gi|315443360|ref|YP_004076239.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium sp. Spyr1] gi|189039980|sp|A4T8L3|RF1_MYCGI RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|145215381|gb|ABP44785.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium gilvum PYR-GCK] gi|315261663|gb|ADT98404.1| bacterial peptide chain release factor 1 (bRF-1) [Mycobacterium sp. Spyr1] Length = 357 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 140/328 (42%), Positives = 194/328 (59%), Gaps = 17/328 (5%) Query: 14 NRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + E+E R+++ K+ +A ISPI++ + + + + + D Sbjct: 13 AEYGELEQRLADPDLHADAGAARKVGRRFAQISPIVATYRKLEAARGDLEAARELAADDA 72 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 S + D ++ L+ + LL P+D D +LE+++G GG E+ALF Sbjct: 73 SFAAEVDELTDQIGD-------LDRALTDLLAPRDPHDADDIVLEVKSGEGGEESALFAA 125 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-----RGVFSRMKFESGVHRV 185 DL RMY RYA W V +L + +D GGYK+ +I+ GV++R+KFE GVHRV Sbjct: 126 DLARMYIRYAERHGWTVTMLGETTSDLGGYKDATLSIASKGDSADGVWARLKFEGGVHRV 185 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 QRVP TE+ GRVHTSAA V V PE E V I D+R+D R+SG GGQ VNTTDSAV Sbjct: 186 QRVPVTESQGRVHTSAAGVLVYPEPDEVEQVQIDESDLRVDVYRSSGKGGQGVNTTDSAV 245 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ + + SA+R QI + DRS Sbjct: 246 RITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQASADASADRASQIRTVDRS 305 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYV 331 ERIRTYNF + RI DHRIN + L+ V Sbjct: 306 ERIRTYNFPENRIADHRINFKAHNLDQV 333 >gi|70727136|ref|YP_254052.1| peptide chain release factor 2 [Staphylococcus haemolyticus JCSC1435] gi|68447862|dbj|BAE05446.1| peptide chain release factor 2 [Staphylococcus haemolyticus JCSC1435] Length = 332 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 107/332 (32%), Positives = 170/332 (51%), Gaps = 17/332 (5%) Query: 23 MSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D K + A+ +++ +++ ++ ++ + DL Sbjct: 1 MTEPDFWDDQNKAQDVIDKNNALKSVVNGYHELEEEVEDMTATWELLQEELDGDVKSDLE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + +E ++ LL D + ILE+ G GG+E+ + L RMY+RY Sbjct: 61 -----QNVLDFKEKVDQFELQLLLDGPHDANNAILELHPGAGGTESQDWASMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 GEQQGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A+ V+PE +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 SFASCDVIPEFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNN 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG 314 +E+SQ +NR AMK+L+A+LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 QNERSQIKNREAAMKMLKAKLYQLKLEEQEREMAEIRGEQKEIGWG---SQIRSYVFHPY 292 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N K++ V+ G I I L Sbjct: 293 SMVKDHRTNEETGKVDAVMDGEIGPFIESYLR 324 >gi|169634751|ref|YP_001708487.1| peptide chain release factor 2 [Acinetobacter baumannii SDF] gi|169153543|emb|CAP02711.1| peptide chain release factor 2 [Acinetobacter baumannii] Length = 310 Score = 209 bits (532), Expect = 5e-52, Method: Composition-based stats. Identities = 103/316 (32%), Positives = 163/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + E Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELSTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E ++ A K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMQKRNEAAQALEDLKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|307243612|ref|ZP_07525755.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM 17678] gi|306492981|gb|EFM64991.1| peptide chain release factor 2 [Peptostreptococcus stomatis DSM 17678] Length = 348 Score = 209 bits (531), Expect = 5e-52, Method: Composition-based stats. Identities = 112/349 (32%), Positives = 186/349 (53%), Gaps = 9/349 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +SH + L++R +IE M+E + K + I +++ Y Q +D++ Sbjct: 1 MSHFDLKGLESRKVDIEKLMAEQDFWEDTDKSNKILQENKTIEVRLTQYSQLITSIEDIN 60 Query: 64 TVIGDHNSDSEIRDLAQIE-VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ DS D ++ K+ RE + + +L D + IL + +GTGG Sbjct: 61 ILLELSEEDSTEEDQEIENSIIDQVKDARENLDRMTMEMLFSGQYDSNNAILSVNSGTGG 120 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +A + L RMY R++ +KV+++ + + + G K + G+ + +K E GV Sbjct: 121 LDAQDWAQMLLRMYIRWSESSGYKVKLIDINSDPEAGIKTATILVQGQNAYGHLKSEKGV 180 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ ++SG+ HTS A++ V+PE +I V+I D++IDT R+SG+GGQHVNTTD Sbjct: 181 HRLVRISPFDSSGKRHTSFASIDVVPELNEDIKVEINQTDLKIDTYRSSGAGGQHVNTTD 240 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIG 298 SAVRITHIPTGI+V +E+SQH N+ AMK+L A+L ++ + + QI Sbjct: 241 SAVRITHIPTGIVVQCQNERSQHSNKDIAMKLLMAKLIQLKEEENKERIEDLQGKYSQIT 300 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + + DHR N ++ V+ G +D+ + L Sbjct: 301 WG---SQIRSYVFQPYKLVKDHRTNEENANVDAVMDGKLDNFMFEYLKQ 346 >gi|225430898|ref|XP_002276037.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 454 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 162/341 (47%), Gaps = 5/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E++ ++S D K E A++ + KI + K + +D T++ Sbjct: 104 LQQLEEELAALEMKAADSSFWDDRAKAQETLLALTDVKDKIKLLTDFKTQVEDAETIVKL 163 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I KE+ + + L D + ++ I AG GG++A + Sbjct: 164 TEEMDSIDTGLLEEAANIIKELNKALDRFELTQLLSGPYDKEGAVISITAGAGGTDAQDW 223 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 224 ADMLLRMYVRWGEKQRYKTRVVEKSMGEEAGIKSATIELEGRYAYGYLSGEKGTHRIVRQ 283 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS + V V+P E +D IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 284 SPFNAKGLRQTSFSGVEVMPLLPEESMDVEIPEEDLEISFSRAGGKGGQNVNKVETAVRI 343 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 344 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQ 402 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y F + + D R + V+ G ++ I L Sbjct: 403 IRNYVFHPYKLVKDVRTGYETSDITSVMDGELEPFIKAYLK 443 >gi|57241933|ref|ZP_00369873.1| peptide chain release factor 2 [Campylobacter upsaliensis RM3195] gi|57017125|gb|EAL53906.1| peptide chain release factor 2 [Campylobacter upsaliensis RM3195] Length = 368 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 187/347 (53%), Gaps = 14/347 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +L+ + +EIE++ ++ + L +E I+ ++ + +L + Sbjct: 27 NELRVKLSEIEMQENDPNFWNNAKNAAVLGKEKTKITNLLKAYENAFNALNDANELFDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N D ++ + ++ + + +L +D+K+ I+ I G GG+E+ Sbjct: 87 NSENDDETLKA-----LFEDAPKLEDNITSLEISMLLSGENDNKNAIVSIHPGAGGTESN 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +KVE L + D+ G K++ + G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRFCEREGFKVETLDFQEGDEAGLKDVSFLVKGENAYGYLKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++GR HTS ++V V PE +I+++I +D+RID RASG+GGQHVN T+SAVR Sbjct: 202 RTSPFDSAGRRHTSFSSVMVSPELDDDIEIEIEEKDLRIDFYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPT I+V +++SQH+N+ A K+LR+RLY++E + ++ K ++G G Sbjct: 262 ITHIPTNIVVQCQNDRSQHKNKATAFKMLRSRLYELELMKQEAVANSGEKSEMGWG---H 318 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F ++ D R N E +L G I +I +L A +A+ Sbjct: 319 QIRSYVLFPYQQVKDTRSNEAFSNAEGILDGDIKKMIEGVLIAMKAQ 365 >gi|225350864|ref|ZP_03741887.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158320|gb|EEG71562.1| hypothetical protein BIFPSEUDO_02438 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 376 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 105/348 (30%), Positives = 172/348 (49%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L + ++E++ +E D + + +S + S++ Q D+ T+ Sbjct: 25 DVDRLTAQAKDLEVQAAEPGLWDNPENAQKVTSKLSAVQSQLKRLASASQRIDDVETLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D++ AQ EV +I+ ++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGQEEEDADTLAEAQSEVESIQNDLADMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + RM E G HR+ Sbjct: 141 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +D+P +IR+DT +SG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDVPDSEIRVDTYCSSGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + + D R + + V G ID I + + Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDAFIEAGIRWRHEQ 366 >gi|306823395|ref|ZP_07456770.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC 27679] gi|309802644|ref|ZP_07696748.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022] gi|304553102|gb|EFM41014.1| peptide chain release factor RF2 [Bifidobacterium dentium ATCC 27679] gi|308220708|gb|EFO77016.1| peptide chain release factor 2 [Bifidobacterium dentium JCVIHMP022] Length = 380 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 170/349 (48%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E+E++ +E D + + +S + S++ Q D+ T++ Sbjct: 29 DVDRLTVQAKELEVQATEPGLWDDPENAQKITSKLSAVQSQLKRLASASQRIDDVETLVE 88 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D++ + A+ E+ I ++ ++E + D++S ++ IR+G GG +A Sbjct: 89 LGREEEDADTLEEAKNEIEGIRHDLDDMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 144 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + RM E G HR+ Sbjct: 145 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRMSVEGGTHRL 204 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +D+P +IR+DT +SG GGQ VNTT SAV Sbjct: 205 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIDVPDSEIRVDTYCSSGPGGQGVNTTYSAV 264 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 265 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 322 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +++R+Y + + D R + + V G ID I + + Sbjct: 323 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDIDAFIEAGIRWRHEQR 371 >gi|317057134|ref|YP_004105601.1| peptide chain release factor 2 [Ruminococcus albus 7] gi|315449403|gb|ADU22967.1| peptide chain release factor 2 [Ruminococcus albus 7] Length = 378 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 167/352 (47%), Gaps = 7/352 (1%) Query: 1 MVFLSHK--QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQE 58 M+ H I + + E+ + +E D K + K+ Y++ Sbjct: 19 MIRELHDVYDIENAAEKIEELHEKAAEPGFWDDPEKSQVVLQQTRNLEGKVERYNKFNGA 78 Query: 59 EQDLHTVIGDH-NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 D+ +I D + + E+ A +++ + + L D + IL Sbjct: 79 ADDIEVMIEMAAEEDEDTQAELVEEIKAELDKLKADLDAASLETLLTGEYDHSNAILNFH 138 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG+EA + L RMY ++A + +++ + D G K I G + +K Sbjct: 139 AGAGGTEAQDWTEMLIRMYTKWADSHGFSAKIMDILEGGDAGIKSCSMFIEGENAYGYLK 198 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 ESG+HR+ R+ ++SG HTS + V V+PE I+V+I EDI ++ RASG+GGQH Sbjct: 199 SESGIHRLVRISPFDSSGSRHTSFSAVEVMPELDDTIEVEIRPEDIEMEVYRASGAGGQH 258 Query: 237 VNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N T SAVR+ H PTGI+ +++SQ QN+ AMK+L+A+L +++ + + + + Sbjct: 259 INKTSSAVRLIHKPTGIVTACQTQRSQFQNKDYAMKMLKAKLIEIKEREHLEKIEDIKGV 318 Query: 296 QIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q +IR+Y F + D R ++ V+ G +D IN L A Sbjct: 319 Q-KEIAWGSQIRSYVFMPYTLVKDLRTGFEYNNVKAVMDGDLDGFINAYLKA 369 >gi|154507630|ref|ZP_02043272.1| hypothetical protein ACTODO_00111 [Actinomyces odontolyticus ATCC 17982] gi|153797264|gb|EDN79684.1| hypothetical protein ACTODO_00111 [Actinomyces odontolyticus ATCC 17982] Length = 373 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 95/349 (27%), Positives = 165/349 (47%), Gaps = 5/349 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ + E+ + + D +A+S S++ Q + DL ++ Sbjct: 26 DKLREQIVELNEKAAAPDLWDDPSAAQAVTSALSHRQSELDRITQMSERIDDLEAMVDMA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + E A +++R+ ++ L D+++ ++ IR+G GG +AA F Sbjct: 86 AEDPDEGADILAEAEADLEKLRKDLGDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +V+ +S ++ G K + + + E+G HR+ R+ Sbjct: 146 EILLRMYLRWAERHGYPTKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRIS 205 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++IP ++++D R+SG GGQ VNTTDSAVR+TH Sbjct: 206 PFDNQGRRQTSFAAVEVIPLIETTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTH 265 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V+ EKSQ QNR A++VL++RL + + ++ S +++R Sbjct: 266 IPTGIVVSMQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAKKKELAGDVKAS--WGDQMR 323 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +Y + + D R + V G ID IN + + + + Sbjct: 324 SYVLQPYQMVKDLRTEYESGNPQSVFDGDIDGFINAGIRWRKNEQKAAQ 372 >gi|301100688|ref|XP_002899433.1| peptide chain release factor, putative [Phytophthora infestans T30-4] gi|262103741|gb|EEY61793.1| peptide chain release factor, putative [Phytophthora infestans T30-4] Length = 378 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 178/345 (51%), Gaps = 15/345 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 AE+ ++ D + AA+ +++ ++ + ++L+ + + Sbjct: 32 QELAELRQEAADPKLWDDASNAASVVQRLAALESRETRVHELHRQFLDTKELYVLAKEEE 91 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +S + D + + + + L D SC LEI+AG GG+++ + Sbjct: 92 DESMLGDCVSAMTVVRAEAQQ-----LRLEFLLSHETDAHSCFLEIQAGAGGTDSCDWTA 146 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R++ +R ++V+ + S D+ G++ +V + G + K E+GVHR+ R+ Sbjct: 147 MLARMYARWSEMRGFQVQYVDESVGDEAGFRSVVLKLDGVYAYGWAKNEAGVHRLVRISP 206 Query: 191 TEASGRVHTSAATVAVLPE----AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 +++GR HTS A V V P + ++++ +D+RIDT R+SG GGQHVN+TDSA+RI Sbjct: 207 FDSAGRRHTSFAQVRVYPMAAEGRSSAEIEVSTKDLRIDTFRSSGPGGQHVNSTDSAIRI 266 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+ TGI+V + S++SQH+N+ AM +LRA+LY + + A R + G + Sbjct: 267 THLRTGIVVQSQSDRSQHRNKAEAMAMLRAKLYQRKLEEEAKARQKFAQGL-GDNAWGNQ 325 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 IR+Y + + DHR N + + VL G ID I +L A Sbjct: 326 IRSYVLHPYQLVKDHRTNYSEGNIAQVLDGDIDRFIEKMLLHQTA 370 >gi|126735602|ref|ZP_01751347.1| peptide chain release factor 2 [Roseobacter sp. CCS2] gi|126714789|gb|EBA11655.1| peptide chain release factor 2 [Roseobacter sp. CCS2] Length = 374 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 111/335 (33%), Positives = 168/335 (50%), Gaps = 5/335 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ + YD QE D +I + + Sbjct: 31 RLEEFNARVEDPTLWDDPEAAQKLMRERQLLVDAMGNYDSINQELSDNIELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +A+ E ++ + + L D LEI AG GG+E+ + L R Sbjct: 91 AEVVAEAEAALVKLADKA--AKKELEALLDGEADGNDTFLEINAGAGGTESCDWANMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ + D+ G K ISG + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQAEQSGDEAGIKSASYKISGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIR+DT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPADIRLDTYRSSGAGGQHVNTTDSAVRITHHPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR A+K L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAIKALKSRLYQMELDKRSTLVNEAHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R N + VL G +D ++ L Sbjct: 328 YQMVKDLRTNFETSDTKGVLDGDLDGLMAATLAMD 362 >gi|260550208|ref|ZP_05824421.1| peptide chain release factor 2 [Acinetobacter sp. RUH2624] gi|260406736|gb|EEX00216.1| peptide chain release factor 2 [Acinetobacter sp. RUH2624] Length = 310 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 101/316 (31%), Positives = 163/316 (51%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + E Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLVDVQ-----SELGTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+THIP+GI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPSGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E ++ + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDRFIEASLKQ 308 >gi|299144433|ref|ZP_07037513.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518918|gb|EFI42657.1| peptide chain release factor 2 [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 348 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 115/353 (32%), Positives = 185/353 (52%), Gaps = 10/353 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ + +++N+ E+ + + D + + SKI YD+ + + Sbjct: 1 MVNLFDLSEMRNKVKELNDKQMDVGFWDNAENAQKVIREQNHYQSKIDKYDKLIKSINEA 60 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I + + ++ + I +L N+ L D +CI+ I AG GG Sbjct: 61 EDLIDLMEMEDDY--SFYGDLKLDLENIEKLSNDFKLETLLNGEYDSNNCIISIHAGAGG 118 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA + L RMY RYA R ++VE L ++ G K + I+G + +K E GV Sbjct: 119 TEAQDWASMLNRMYVRYAEKRGFRVETLDMLKEEEAGIKSVTLLITGDNAYGYLKGEKGV 178 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+ R HTS A++ V P+ + +V+I ED++IDT R+SG+GGQHVNTTD Sbjct: 179 HRLVRISPFDANKRRHTSFASLDVYPQLDDDNEVEIKAEDLKIDTYRSSGAGGQHVNTTD 238 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIG 298 SAVRITHIPTGI+V +E+SQ QNR +AM +L+A+L + + + + QI Sbjct: 239 SAVRITHIPTGIVVQCQNERSQIQNRDKAMNMLKAKLIALAEEEKKEKIEDLQGNYSQIA 298 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G +IR+Y F + DHR N + + V+ GY+D+ IN L + +K Sbjct: 299 WG---SQIRSYVFQPYTLVKDHRTNTEIGDVNKVMDGYLDEFINSYLQLNASK 348 >gi|183602511|ref|ZP_02963876.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis HN019] gi|219683556|ref|YP_002469939.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis AD011] gi|241190585|ref|YP_002967979.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195991|ref|YP_002969546.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218152|gb|EDT88798.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis HN019] gi|219621206|gb|ACL29363.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis AD011] gi|240248977|gb|ACS45917.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250545|gb|ACS47484.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis DSM 10140] gi|289178324|gb|ADC85570.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Bifidobacterium animalis subsp. lactis BB-12] gi|295793572|gb|ADG33107.1| peptide chain release factor 2 [Bifidobacterium animalis subsp. lactis V9] Length = 377 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 172/348 (49%), Gaps = 11/348 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 LK++ AE+E + S D + + +S S++ D+ T+I Sbjct: 27 DRLKSQEAELEQQASAPGLWDDSEHAQKVMSQLSACQSQLKHLSSAASRLDDVATLIELG 86 Query: 69 -HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +D++ AQ E+ +I+K++ ++E E D +S ++ IR+G GG +AA Sbjct: 87 QEENDADTLHEAQTEIESIQKDLDQMEIETLM----DGEYDSRSAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K +V+ +S ++ G K I + RM E G HR+ R Sbjct: 143 FAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQIDAPYAYGRMSVEGGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P A +++P +IR+DT ASG GGQ VNTT SAVRI Sbjct: 203 ISPFDNQGRRQTSFAAVEVVPLVEATDHIEVPDSEIRVDTYCASGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S ++ Sbjct: 263 THLPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WGDQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 +R+Y + + D R + + V G ID+ I + + + Sbjct: 321 MRSYVLHPYQMVKDLRTGCETSQTQAVFDGDIDEFIQAGIRWRHEQRL 368 >gi|312865919|ref|ZP_07726140.1| peptide chain release factor 2 [Streptococcus downei F0415] gi|311098323|gb|EFQ56546.1| peptide chain release factor 2 [Streptococcus downei F0415] Length = 326 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D I + ++ + ++Q ++ ++ + D+ ++ + Sbjct: 1 MTEPDFWDDNITAQKTSQELNELKQTYDTFNQMEELSEESELYLEMLEEDASVQ----GD 56 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ ++ LL + D+ + ILEI G+GG+EA + L RMY+RY Sbjct: 57 LEETLAKLDKMMTSYEMTLLLSEPYDNNNAILEIHPGSGGTEAQDWGDMLLRMYQRYGNA 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVEVL D+ G K + + G + +K E GVHR+ R+ +++ R HTS Sbjct: 117 KGFKVEVLDYQAGDEAGIKSVTLSFEGPHAYGLLKSEMGVHRLVRISPFDSAKRRHTSFT 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EK 260 ++ V+PE I+V+I +D+++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ ++ Sbjct: 177 SIEVMPELDDTIEVEIRDDDLKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVASTVDR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RIT 317 +Q+ NR RAMK+L+A+LY +E+++ A E SA + K +I G +IR+Y F+ + Sbjct: 237 TQYGNRDRAMKMLQAKLYQLEQEKKAQEVSALKGDKKEITWG---SQIRSYVFTPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR + +++ V+ G ID I+ L + Sbjct: 294 DHRTGYEVAQVDKVMDGDIDGFIDAYLKWRLEE 326 >gi|268611479|ref|ZP_06145206.1| hypothetical protein RflaF_18501 [Ruminococcus flavefaciens FD-1] Length = 372 Score = 209 bits (531), Expect = 6e-52, Method: Composition-based stats. Identities = 112/345 (32%), Positives = 175/345 (50%), Gaps = 16/345 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I + K R AE+ ++ D K+ +E ++ I K + + ++ L + Sbjct: 27 IENAKKRVAELGDETAKEGFWDDLENSQKVLKEQKSLERKIEKFNKLNDSLEDLITLIEL 86 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +S+I ++ A + + + L D + IL AG GG+EA Sbjct: 87 SIEAEDESDIEEIK-----AEAESFKSKLEDEKLSTLLTGEYDGANAILTFHAGAGGTEA 141 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+A ++KVE+L D D+ G K I G + MK ESGVHR+ Sbjct: 142 QDWAEMLYRMYNRWAERHEFKVELLDYLDGDEAGMKSASILIEGENAYGYMKSESGVHRL 201 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 RV +A GR HTS A + V+PE I+VDI EDI ++ R+SG+GGQ VN T SAV Sbjct: 202 VRVSPFDAQGRRHTSFAALEVMPELDDSIEVDIRPEDIEMEVYRSSGAGGQKVNKTSSAV 261 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 R+ H PTGI+V +++SQ+QN+ AMK+LR++L +++ + + + + QI G Sbjct: 262 RLIHKPTGIVVSCQTQRSQYQNKDYAMKMLRSKLIEIKEREHLEKIEDIKGVQNQIAWG- 320 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + D R ++ V+ G ID IN L Sbjct: 321 --SQIRSYVFMPYTLVKDTRTGFENGNIQAVMDGDIDGFINAYLK 363 >gi|302325967|gb|ADL25168.1| peptide chain release factor 2 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 389 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 5/339 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +E + + K I + I + + Q DL + Sbjct: 46 DLEAKTEELYVLEKDSGDPNLWNDQEKAQSMMKKIGNLKGLIDSWKEVSQTCDDLAELY- 104 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + D E DL I +E + + + DD +C++ I G GG+E+ Sbjct: 105 EMSKDEESADLTATLESDIADLKSRVEA-MEFKKMLNGPDDACACLMSIHPGAGGTESQD 163 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LFRMY + K +V+ + +D G K +S + ++ E GVHR+ R Sbjct: 164 WALMLFRMYTHFFEREKMDFKVVDFQEAEDAGLKSATIEVSCENAYGLLRSEIGVHRLVR 223 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + +A+ R HTS V + PE +++ D+ + ++R+DT R+SG+GGQ++N TDSAVR+T Sbjct: 224 ISPFDANARRHTSFTAVYLYPEHEDVEFDLDMSEVRVDTYRSSGAGGQYINKTDSAVRMT 283 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGIM +E+SQ QNR K+L+ + + R +R A R + + +I Sbjct: 284 HLPTGIMASCQTERSQIQNRETCYKMLKTMVAEHYRLEEEAKRDA-RMAEKKKVEWGSQI 342 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+Y + + D R + VL G I I+ L Sbjct: 343 RSYVLQPYQLVKDLRTGVETSDTAGVLDGKIKPFIDAYL 381 >gi|297200074|ref|ZP_06917471.1| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083] gi|297147562|gb|EDY54581.2| peptide chain release factor 2 [Streptomyces sviceus ATCC 29083] Length = 368 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ D + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKADALRSRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + DS+ A+ E+ +++K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDSDTLAEAESELTSVKKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQKGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAAMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTDFEVGNPEAVFNGEIDGFLEAGIRWRKQQ 366 >gi|295105719|emb|CBL03262.1| peptide chain release factor 2 [Gordonibacter pamelaeae 7-10-1-b] Length = 363 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 108/347 (31%), Positives = 162/347 (46%), Gaps = 18/347 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I D A+++ ++ D S + I YD+ +D + Sbjct: 24 IDDKTAELAKLDEEIAAPGFWDDAAHAQGVSKQASNLRETIREYDEAAALLEDARAALEL 83 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D A + + + LE + D IL + G+GG EA + Sbjct: 84 AGEDEAFAAEADDALARLSDLLDALE----ITSWFSERFDGGDAILTVNPGSGGLEAQDW 139 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY RYA + WKV +L + G + I GR F +K E+GVHR+ R+ Sbjct: 140 TDMLYRMYVRYAEKKDWKVTILDVVPGEGIGLDKATIQIEGRNAFGMLKSENGVHRLVRI 199 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R HT+ A V VLP +I+VD+ D+R+D R+SG GGQ VNTTDSAVR+T Sbjct: 200 SPTDDKKRRHTTFAGVEVLPVLPDDIEVDLNPADVRVDVYRSSGPGGQCVNTTDSAVRLT 259 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR---- 302 HIPT I+V +EKSQ QN+ A +VL+A+LY+ E ++ A E + R GDR Sbjct: 260 HIPTNIVVTCQNEKSQLQNKEAAFRVLKAKLYEREEQKRAQELAELR------GDRMDNT 313 Query: 303 -SERIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y + + D R + ++ VL G +++ + Sbjct: 314 FGSQIRNYVLYPYQMVKDVRSGVETGNVDAVLDGDLEEFVIGYHKWR 360 >gi|224125026|ref|XP_002319484.1| predicted protein [Populus trichocarpa] gi|222857860|gb|EEE95407.1| predicted protein [Populus trichocarpa] Length = 488 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 169/346 (48%), Gaps = 17/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R + +++++ D + K++ E+ ++ + K+ +Q+ E D+ + Sbjct: 138 KKLMVRLDLLSVQLNKPDLWDDPVHAGKISREHGSLMAKMKKVRTLEQELLEHIDMIKLA 197 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + ++ + + L D C +E++AG GG+E+ Sbjct: 198 REEDDNELESEMLKALLQMRRNSNE-----KEQEALLSGEQDSCPCYIEVQAGAGGTESM 252 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + +MY+ +A + V V+ + G K + G F K E+GVHR+ Sbjct: 253 DWAKMVMQMYKSWAQRHGYGVTVVDEMPGEIAGIKRATIKVDGEYAFGYAKAEAGVHRLV 312 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE--DIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++ R HTS A VAV+P + +P+ D+RI+ RA G+GGQHVNTT+SAV Sbjct: 313 RISPFDSGKRRHTSFAAVAVIPILRDGFTHVPINESDLRIERFRAGGAGGQHVNTTESAV 372 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGD 301 RI HIPTGI +E+SQH N+ AM VL++RL E R A + + + IG G+ Sbjct: 373 RIVHIPTGITATCQNERSQHMNKDSAMAVLQSRLDQREMARQAQMNAYHTQSLTDIGWGN 432 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y R + D R N + + VL+G ID I L+A Sbjct: 433 ---QIRSYVLHPYRMVKDLRTNYEVTNPDSVLEGEIDGFILSYLSA 475 >gi|72162878|ref|YP_290535.1| peptide chain release factor 2 [Thermobifida fusca YX] gi|71916610|gb|AAZ56512.1| bacterial peptide chain release factor 2 (bRF-2) [Thermobifida fusca YX] Length = 375 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 97/345 (28%), Positives = 163/345 (47%), Gaps = 13/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + ++ + ++ + K+T + + +SK+ + + L Sbjct: 25 DLDAKRTEIEQLREQSADPELWNDQANAQKVTRRLSFLESEVSKVENIRSRIDDLGVLFE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + +D+E A+ E+ A+ K+I +LE L D++ ++ I A GG + Sbjct: 85 LAA-AENDAETLAEARRELAALRKDISDLEV----RTLLSGPYDEREALISINAQAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA + L RMY R+A + E+ +S ++ G K + + ++ E G HR Sbjct: 140 AADWTQMLQRMYLRWAERHGYPTEIYETSYAEEAGIKSTTFVVKAPYAYGMLRGEHGTHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R TS A V V+P ++I ++RID R+SG GGQ VNTTDSA Sbjct: 200 LVRISPFDNQSRRQTSFAGVDVVPVVEQSDHIEIDESELRIDVYRSSGPGGQGVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V +E+SQ QNR AM +L+A+L + +R+ E +A R Sbjct: 260 VRITHLPTGIVVSCQNERSQLQNRATAMSILQAKLLERKRQEEEAELAALRGESAR--AW 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 ++R Y + + D R + VL G ID+ IN + Sbjct: 318 GTQMRNYVLHPYQSVKDIRTGVETGNTSAVLDGEIDEFINAGIRW 362 >gi|318040666|ref|ZP_07972622.1| peptide chain release factor 2 [Synechococcus sp. CB0101] Length = 356 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 94/340 (27%), Positives = 159/340 (46%), Gaps = 6/340 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK R ++E S+ D + + + + +++ Q + D + Sbjct: 7 DVPALKARQQDLEQLASQPDFWDDQKQAQAKMRQLDEVKAQLEQLSQWQGAVADAEATVE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + L++ + + L D + ++ I AG GG++A Sbjct: 67 IYGLEPDEELLSESNEALQKLRSDL--DRWELERLLSGPYDKEGAVISINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A KV V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 125 WALMLMRMYTRWAEDHGMKVTVDELSEGEEAGIKSCTIEIEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E DIP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGVEVMPKIEEEVKLDIPDKDLEITTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +AM +L A+L + +++ A E + R I + Sbjct: 245 LHIPTGLFVRCTQERSQLQNKEKAMALLMAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IR Y F + + D R ++ V+ G +D I LL Sbjct: 304 IRNYVFHPYQMVKDLRTQHETTDVQGVMDGDLDPFIQSLL 343 >gi|116072022|ref|ZP_01469290.1| peptide chain release factor 2 [Synechococcus sp. BL107] gi|116065645|gb|EAU71403.1| peptide chain release factor 2 [Synechococcus sp. BL107] Length = 356 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 164/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ + ++ + + +++ + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWNDQQNAQKQMRRLDEVKAQLKQLADWRSAIDDAKATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +++ + E E+R+ + L D + +L I AG GG++A Sbjct: 67 LYELEAD--EDMLGEAQQGLTELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A +V + S+ ++ G K + GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHDMRVTIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A + V+P+ ++D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGIEVMPKLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 245 QHLPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G +D I+ L Sbjct: 304 IRNYVFHPYQMVKDLRTQEETNDVQAVMDGALDPFIDASLRQ 345 >gi|262370876|ref|ZP_06064200.1| peptide chain release factor 2 [Acinetobacter johnsonii SH046] gi|262314238|gb|EEY95281.1| peptide chain release factor 2 [Acinetobacter johnsonii SH046] Length = 310 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 102/316 (32%), Positives = 160/316 (50%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +++ + + ++ Q + + + + +S + D+ E Sbjct: 1 MAKEKGELENVLNVLDGLATQLEDAQAMLDLAVEADDESLLADVQAE-----LTSAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEESD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V V PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFVSPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+TH PTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHAPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E + + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEMSKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L Sbjct: 293 VLDGDLDKFIEASLKQ 308 >gi|149910167|ref|ZP_01898813.1| putative peptide chain release factor 2 [Moritella sp. PE36] gi|149806753|gb|EDM66717.1| putative peptide chain release factor 2 [Moritella sp. PE36] Length = 301 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 98/305 (32%), Positives = 159/305 (52%), Gaps = 12/305 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 I+ I + + L + + + + + + + + + + Sbjct: 2 IVKTIDDLGTGCDDVEGLVELAVEAEDEETFAEAQHEIIGLEAQLAK-----LEFRRMFS 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D C L+I++G+GG+EA + L RM+ R+ K+KVE++ S D G K Sbjct: 57 GKHDANDCYLDIQSGSGGTEAQDWANMLLRMFLRWGEAHKFKVELIEVSSGDVAGIKGAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIR 223 + G + ++ E+GVHR+ R ++SGR HTS A++ V PE + ++D+ D+R Sbjct: 117 IRLGGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASIFVYPEIDDSIEIDLNPSDLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVNTT+SAVRITH+PT ++V +++SQH+N+ AMK +RA+L+D E Sbjct: 177 IDVYRASGAGGQHVNTTESAVRITHLPTNLVVQCQNDRSQHKNKDAAMKQMRAKLFDHEM 236 Query: 283 KRMANE--RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 ++ E + + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 QKQNAEKQIAEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFI 293 Query: 341 NPLLT 345 L Sbjct: 294 EASLK 298 >gi|307720247|ref|YP_003891387.1| bacterial peptide chain release factor 2 (bRF-2) [Sulfurimonas autotrophica DSM 16294] gi|306978340|gb|ADN08375.1| bacterial peptide chain release factor 2 (bRF-2) [Sulfurimonas autotrophica DSM 16294] Length = 365 Score = 209 bits (531), Expect = 7e-52, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 183/343 (53%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ R EI+ ++ + K+ +E + + K + ++ ++L+ + Sbjct: 27 KKIQTRLQEIQELENDQDFWNNADYAAKIQKEKTQLQRKLDKYNTAKNAVEDAKELYDMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + + + ++ +L D + IL I G GG+E+ Sbjct: 87 KEEDDSESLEA-----LYEDAPNLEKQIRDMEIEVLLSGETDANNAILSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY+R+A R +KVEVL D+ G K++ I G + +K E+G+HR+ Sbjct: 142 DWAEMLLRMYKRWAERRGFKVEVLDYQAGDEAGIKDVSVLIKGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS A+V V P +ID+ I +DIRIDT R+SG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFASVMVSPEIDDDIDITIEDKDIRIDTYRSSGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THI TG++V +++SQH+N+ AMK+L++RLY++E + + + K +IG G Sbjct: 262 LTHIETGVVVQCQNDRSQHKNKATAMKMLKSRLYELELEEQKAKEAGIAKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y ++ D R N + +L G ID++I +L A Sbjct: 319 QIRSYVMQPYQQVKDTRSNEAYSNVSGILDGDIDNMIEGVLIA 361 >gi|294659861|ref|XP_002770657.1| DEHA2G17204p [Debaryomyces hansenii CBS767] gi|199434289|emb|CAR65990.1| DEHA2G17204p [Debaryomyces hansenii] Length = 411 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 133/362 (36%), Positives = 205/362 (56%), Gaps = 14/362 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L K+ +K+ F +E ++SE + +++ IS I+ Y + + Q L Sbjct: 48 LLLKRAESMKDEFKILETKISEGSF---DQETNVKFSNISVILDNYHKYQHEIENLQSLL 104 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + D+E+ A E+ + ++ + LLP T D+ +LE+R G GGS Sbjct: 105 EILHEEE-DAEMVHEASNELKEVIPKVFNFTKVLQSRLLPPVTHSDRPAMLELRPGVGGS 163 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDL MY +A KWK ++S S ++G E + +I G +S ++ ESGVH Sbjct: 164 EAALFAGDLLNMYINFANHMKWKWTMISESHGNNGSVNEAIISIDNPGAYSILRHESGVH 223 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQ 235 RVQR+P+TE GR+HTS A V VLP+ + + ++RIDTMRA G GGQ Sbjct: 224 RVQRIPSTETKGRIHTSTAAVVVLPKMSEGTESSLKDDERQFQPGEVRIDTMRAGGKGGQ 283 Query: 236 HVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVR+THIPTGI V + +SQ +N+ +A +LRARL +ER + E+ R Sbjct: 284 HVNTTDSAVRLTHIPTGIQVQQQDERSQPKNKAKAFSILRARLAALERDKEIAEQRKLRT 343 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIG 353 Q+ + DRS++IRTYN+ Q R+TDHR +LY ++ ++G +++I+ + + + Sbjct: 344 DQVTTTDRSDKIRTYNYPQNRVTDHRCGFSLYDIDGCMEGYRLNEIVENVEQHEFEERLE 403 Query: 354 SA 355 Sbjct: 404 DL 405 >gi|154496274|ref|ZP_02034970.1| hypothetical protein BACCAP_00559 [Bacteroides capillosus ATCC 29799] gi|150274357|gb|EDN01434.1| hypothetical protein BACCAP_00559 [Bacteroides capillosus ATCC 29799] Length = 373 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 169/340 (49%), Gaps = 6/340 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + +E + + K + I + K+ ++ E +DL T+ Sbjct: 27 LEAAERELEMLESESASDGFWNNLEKAQKIQQRIKQLHHKVDGQKKRLGEWEDLLTLCEM 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + + + ++E + E ++ L + D+ + +L I AG GG+EA + Sbjct: 87 GNEEEDESLVPELEEGFNKLTANMEEARLSTLFTGEYDDN--NVVLAIHAGAGGTEAQDW 144 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A ++ +V+ D D+ G K I G + ++ E GVHR+ RV Sbjct: 145 AQMLLRMYTRWAERHDFEYQVVDFQDGDEAGIKSATVMIQGENAYGHLRSEHGVHRLVRV 204 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +A+ R TS A V V+P+ + DV+I E+ + R+SG+GGQH+N T SAVR+ Sbjct: 205 SPFDANARRQTSFAAVEVMPDLPEDADVEIRPEEYEMQVFRSSGAGGQHINKTSSAVRLI 264 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H TGI+V +E+SQ QN+ +++LRA+L +++ ++ A + S + +Q+ + +I Sbjct: 265 HHATGIVVSCQTERSQFQNKDTCLRMLRAKLVELKMQQHAEKLSDIKGVQLK-IEWGSQI 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + + D+R + V+ G ID IN L Sbjct: 324 RSYVFMPYQLVKDNRSGFETSNVNGVMDGDIDGFINAYLK 363 >gi|47558936|gb|AAT35568.1| protein release factor 2 [Chlamydia trachomatis] Length = 368 Score = 208 bits (530), Expect = 7e-52, Method: Composition-based stats. Identities = 112/344 (32%), Positives = 178/344 (51%), Gaps = 11/344 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +N E+E + + D + + I+ + ++S +++ K + + + D Sbjct: 26 EGKENELKELEQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDE 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S ++ ++E + E + E L L D SC L I AG GG+E+ +V Sbjct: 86 ESSKDLEMQKELEKEFVFCERKITE--WETLRLLSGELDRSSCFLSINAGAGGTESCDWV 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 + RMY R+A+ W+VEV+ D + G K I + G + K ESGVHR+ R+ Sbjct: 144 EMVLRMYMRWASSHSWRVEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH Sbjct: 204 PFDSNAKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITH 263 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 PTGI+V+ +E+SQ QNR M +LRAR+Y + +++ +RK +I G + Sbjct: 264 FPTGIVVSRQNERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 IR Y F + D R + ++ ++ G +D I L + Sbjct: 321 IRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 364 >gi|320095989|ref|ZP_08027602.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178 str. F0338] gi|319977060|gb|EFW08790.1| peptide chain release factor RF2 [Actinomyces sp. oral taxon 178 str. F0338] Length = 372 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 95/342 (27%), Positives = 167/342 (48%), Gaps = 5/342 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ + AE+ + + D + E +A+S S++ + + DL ++ Sbjct: 26 ERLRAQIAELNEKAAAPDLWDDPARAQEVTSALSHRQSELDRVVRMGERIDDLEAMVEMA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + + E A +++ +++ L D+++ ++ IR+G GG +AA F Sbjct: 86 GEDPDEAEEILDEAAADLDTLKKDVSDLEIRTLLDGEYDERNAVITIRSGAGGVDAADFA 145 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +V+ +S ++ G K + + + E+G HR+ R+ Sbjct: 146 EILLRMYLRWAERHGYATKVMDTSYAEEAGLKSATFEVQAPYAYGTLSVEAGTHRLVRIS 205 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P + ++IP ++++D R+SG GGQ VNTTDSAVR+TH Sbjct: 206 PFDNQGRRQTSFAAVEVIPLIESTDHIEIPESELKVDVFRSSGPGGQSVNTTDSAVRMTH 265 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V+ EKSQ QNR A++VL++RL + + ++ S +++R Sbjct: 266 IPTGIVVSMQDEKSQIQNRAAALRVLQSRLLVLRHEEEQAKKKELAGDVKAS--WGDQMR 323 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +Y + + D R + V G ID IN + + Sbjct: 324 SYVLQPYQMVKDLRTEFESGNPQAVFDGDIDGFINAGIRWRK 365 >gi|307297404|ref|ZP_07577210.1| peptide chain release factor 2 [Thermotogales bacterium mesG1.Ag.4.2] gi|306916664|gb|EFN47046.1| peptide chain release factor 2 [Thermotogales bacterium mesG1.Ag.4.2] Length = 370 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 105/339 (30%), Positives = 179/339 (52%), Gaps = 12/339 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + EIE RMS+ + E + + + ++ ++ I Sbjct: 25 DLERIDEKLKEIEKRMSDPSIWND----QREASNLGREAQSYRSTIELLRDVEEEFESIE 80 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 S + V + + + E +L D +C + I G GG+E+ Sbjct: 81 IAVELSGEDESYVKHVEELVRSAEKKVREFELTILLSGEYDINNCFISIHPGAGGTESQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A ++K+ ++ ++ G K + ++G + +MKFE+GVHR+ R Sbjct: 141 WASMLMRMYMRWAEANRFKITIVDELPGEEAGIKSVTINLAGPHAYGKMKFEAGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS A+V+V PE E +++I ED++IDT R+ G+GGQHVN TDSAVRI Sbjct: 201 ISPFDANHRRHTSFASVSVFPEMDEVPEIEIRPEDLKIDTYRSGGAGGQHVNKTDSAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 TH+PTGI+V +E+SQHQN+ AMK+L A+L+++E ++ +E+ + +I G+ Sbjct: 261 THLPTGIVVACQTERSQHQNKANAMKMLYAKLFEIEIEKKRSEKLKLMGDQKEISWGN-- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIIN 341 +IR+Y F + DHR + ++ V+ G ID+ I Sbjct: 319 -QIRSYVFQPYTLVKDHRTDFETGDIQSVMNGEIDEFIE 356 >gi|297171663|gb|ADI22657.1| protein chain release factor B [uncultured Gemmatimonadales bacterium HF0500_22O06] Length = 356 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 164/346 (47%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVD--AYIKLTE-EYAAISPIISKISIYDQKKQEEQDLHT 64 + + R ++ M + D K T E + + S D + E Sbjct: 11 DLESRQERLRVLDQEMVQPGFWDSPDQAKATIDESNRLKGWVDPWSSLDARVSELT---- 66 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + E + E + + + + + DD + ++ I G GG E Sbjct: 67 -ALVELLEEEEDADLEAEFTRGLASVEKDLEVLEVRTMLQGGDDHRDALVTIHPGAGGLE 125 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + G L RMY R++ R + VEVL ++GG K I G + +K E GVHR Sbjct: 126 SQDWAGMLMRMYTRWSERRGFGVEVLDLQSAEEGGIKSATLEIKGECAYGYLKAEGGVHR 185 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + R HTS A+V + P I++DI D+RIDT RASG+GGQHVN TDSA Sbjct: 186 LVRISPFDQQSRRHTSFASVFIYPLVEDGIEIDIDESDLRIDTYRASGAGGQHVNKTDSA 245 Query: 244 VRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSG 300 VRITH PTGI+ E+SQH+NR AMK+LRA LY + ER+ K +IG G Sbjct: 246 VRITHEPTGIVTTCQQERSQHKNRSTAMKMLRAALYQHALQEQERERAVLEATKTEIGFG 305 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y F + DHR L + ++ V+ G +D I L Sbjct: 306 N---QIRSYVFQPYTMVNDHRTELKITNVQGVMDGDLDPFIEAYLK 348 >gi|257785087|ref|YP_003180304.1| peptide chain release factor 2 [Atopobium parvulum DSM 20469] gi|257473594|gb|ACV51713.1| peptide chain release factor 2 [Atopobium parvulum DSM 20469] Length = 369 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 163/344 (47%), Gaps = 11/344 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + + +E+E + D + ++ + ++ D+ K++ D Sbjct: 25 LAEKRQQISELEAESARPNFWDDAEAAQKIMTQLASLRDDVAGIDRAKEKLGDAEAAFEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + LA+ E E D D I+ I+ G GG E+ + Sbjct: 85 GTELGDQASFDESRALAVSLEKDLSEL--ELSSWFTDELDHGDAIVTIKPGQGGLESQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LF MY +Y R WKV++ + + G T+SG+ + ++ E GVHR+ R+ Sbjct: 143 CEMLFHMYLKYCDRRGWKVDINDAPAAEVIGLDRATFTVSGKNAYGMLRAEQGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R TS A V VLP +I+VDI D+RID ASG GGQ VNTTDSAVRIT Sbjct: 203 SPTDDKKRRQTSFAGVEVLPVLPEDIEVDIDPNDLRIDVYHASGPGGQGVNTTDSAVRIT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTG +V +E+SQ QN+ AM +LR+RLY++E+++ E R K +I G+ Sbjct: 263 HIPTGTVVTCQNERSQLQNKAAAMNILRSRLYEIEKEKREAELDELRGPKREISFGN--- 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVL-QGYIDDIINPLLTA 346 +IR+Y + I D R +E V G +D I Sbjct: 320 QIRSYVLYPYQLIKDLRTGAETGNVESVFSDGDLDQFIIAYHRW 363 >gi|221195492|ref|ZP_03568547.1| peptide chain release factor 2 [Atopobium rimae ATCC 49626] gi|221184679|gb|EEE17071.1| peptide chain release factor 2 [Atopobium rimae ATCC 49626] Length = 371 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 171/349 (48%), Gaps = 11/349 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + + A + +++ + + A ++ + ++ D + +D + Sbjct: 25 IDEKREEIASLTQISAKADFWNDADFARQTMARLASLKDDVAGIDAAHAKLEDAKAALEL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + LA+ E LA E D D I+ ++ G GG EA + Sbjct: 85 GSETEDAGLLAESEHLADSLARDLSEL--ELSSWFTDELDHGDAIVTVKPGQGGLEAQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LF MY RYAA R W V++ ++ + G T+SG+ + ++ E GVHR+ R+ Sbjct: 143 ADMLFHMYLRYAARRGWSVDIAEATPAEVIGIDRATFTVSGKNAYGMLRAEQGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R TS A V VLP AEI+VDI D+RID ASG GGQ VNTTDSAVRIT Sbjct: 203 SPTDDKKRRQTSFAGVEVLPVLPAEIEVDIDPSDLRIDVYHASGPGGQGVNTTDSAVRIT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSE 304 HIPTG++V +E+SQ QN+ AM +LR+RLY++ER++ E R K +I G+ Sbjct: 263 HIPTGVVVTCQNERSQLQNKAAAMNILRSRLYEIEREKREAELDELRGPKHEISFGN--- 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKM 351 +IR+Y + + D R ++ VL G +D I ++ Sbjct: 320 QIRSYVLYPYQLVKDLRTGEETGNVDAVLDDGDLDPFIIAYHRWRTSQK 368 >gi|294790676|ref|ZP_06755834.1| peptide chain release factor 2 [Scardovia inopinata F0304] gi|294458573|gb|EFG26926.1| peptide chain release factor 2 [Scardovia inopinata F0304] Length = 370 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 169/352 (48%), Gaps = 15/352 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IG 67 +L + +E S D + +S ++ D ++ D+ T+ +G Sbjct: 27 QNLAEKIVSLEKEASAPGLWDDQENAQLVTSRLSQTQNEAKRLDDLERRLDDIATLYELG 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + A+ E+ A+ ++ +LE + D+++ ++ IR+G GG +AA Sbjct: 87 SEEDDQDSKAEAEKELTAVRSDLSDLEIQTL----LDGEYDNRAAVVTIRSGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A +KV+++ +S ++ G K + + ++ E G HR+ R Sbjct: 143 WAQMLMRMYLRWAERHHYKVQIMDTSYAEEAGIKSATFEVDAPYAYGKLSVEGGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + + R TS A V V+P +DIP DIR+DT + G GGQ VNTT SAVRI Sbjct: 203 ISPFDNNSRRQTSFAAVEVIPLVEPTDHIDIPDSDIRVDTYMSHGPGGQGVNTTYSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRS 303 THIPTGI+V E+SQ QNR AM VL++RL ++++ E +A +K G Sbjct: 263 THIPTGIVVTMQDERSQIQNRAAAMSVLQSRLLVMKQE----EEAAKKKELAGDVKASWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + + D R + V G ID I+ + + Sbjct: 319 DQMRSYVLHPYQMVKDLRTGYETSDPQKVFDGDIDAFIDAGIRWRHRERAKE 370 >gi|310659612|ref|YP_003937333.1| prfb [Clostridium sticklandii DSM 519] gi|308826390|emb|CBH22428.1| PrfB [Clostridium sticklandii] Length = 328 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 12/331 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MSE + K + I K+ + + E +D + + D+ + Sbjct: 1 MSEPEFWNEVEKAQQTMQKNKVIEDKLEQFASLESELEDAFVLFELADEDASLEKELHSA 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++E++I EL L D + I+ I AG+GG +A + L RMY+R+A Sbjct: 61 LNSLEEKIDEL----KIATLLSGQYDMNNAIVSIHAGSGGLDAQDWTKMLLRMYDRFAQS 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 ++V L + + G K + I G + +K E GVHR+ R+ + SG+ HTS A Sbjct: 117 MGFRVIELDMIADPEAGIKSVTLKIEGANAYGYLKSEKGVHRIVRISPFDTSGKRHTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE I++DI D++IDT RASG+GGQHVN T+SA+RITH+PTGI+V +++ Sbjct: 177 SVDVIPELDDSIEIDINPADLKIDTYRASGAGGQHVNKTESAIRITHLPTGIVVQCQNQR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RIT 317 SQH N+ AMK+L A+L +++ ++ + QI G +IR+Y F + Sbjct: 237 SQHSNKETAMKMLMAKLIELKELEHKDKIEDLQGEYSQISWG---SQIRSYVFQPYTMVK 293 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR N + ++ V+ G I IN L +Q Sbjct: 294 DHRTNTEIGHVQSVMDGNIMPFINAYLKENQ 324 >gi|163840102|ref|YP_001624507.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC 33209] gi|229470354|sp|A9WPT6|RF2_RENSM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|162953578|gb|ABY23093.1| peptide chain release factor 2 [Renibacterium salmoninarum ATCC 33209] Length = 374 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 164/348 (47%), Gaps = 7/348 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ A + + D + + + +S SK+ + DL ++ Sbjct: 30 DSLRKDIAVLSEQAGVPDLWDNPAEAQKVTSKLSHAQSKLERLETLTARIDDLEVLVELA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S+ + LA+ + + E + L D++ ++ IR+G GG +AA F Sbjct: 90 ESEHDEDSLAEASKELVSLQKSLQEL--EVVTLLAGEYDEREAVVTIRSGAGGVDAADFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + VL +S ++ G K + F + E+G HR+ R+ Sbjct: 148 EMLLRMYLRWAERHGYPTSVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++IP DIR+D R+SG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAAVEVIPLIEQTDSIEIPDNDIRVDVFRSSGPGGQSVNTTDSAVRLTH 267 Query: 249 IPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG +V+ +EKSQ QNR A +VL++RL +++++ E+ A S +++R Sbjct: 268 LPTGTVVSMQNEKSQLQNRAAATRVLQSRLLLLKKQQEDAEKKALAGDVKAS--WGDQMR 325 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +Y + + + D R + VL G IDD I+ + + Sbjct: 326 SYVLNPYQMVKDLRTEHEVGNTSGVLDGDIDDFIDAGIRWRANNRNAA 373 >gi|56551094|ref|YP_161933.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis ZM4] gi|241761334|ref|ZP_04759422.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753249|ref|YP_003226142.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542668|gb|AAV88822.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis ZM4] gi|241374241|gb|EER63738.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552612|gb|ACV75558.1| peptide chain release factor 2 [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 375 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 110/339 (32%), Positives = 167/339 (49%), Gaps = 10/339 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R E+ R+ + D E + I+ E Q+ +I ++ Sbjct: 30 RRLDELNARVEDPSLWDDARAAQEVMRERGRLDESIAATRAIATELQENIELIEMAEAEG 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E + R + L D +E+ AG GG+E+ + L Sbjct: 90 EEEMVQDAISALESLAERA--DRDKVKALLSGEADGNDTYIEVNAGAGGTESQDWAEMLS 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY+R+A + +KVE++ + G K + G + K E+GVHR+ R+ ++ Sbjct: 148 RMYQRWAERQGFKVELVDYHAGEQAGIKSATLLVKGESAYGYAKTENGVHRLVRISPFDS 207 Query: 194 SGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + R HTS A+VAV P +ID+++ +D++IDT R+SG+GGQHVNTTDSAVRITH+PTG Sbjct: 208 NARRHTSFASVAVYPVVDDDIDIEVLDKDLKIDTYRSSGAGGQHVNTTDSAVRITHMPTG 267 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTY 309 I+V +++SQH+NR AMK L+ARLY+ E + E SA K +IG G +IR+Y Sbjct: 268 IVVACQNQRSQHKNRAEAMKQLKARLYERELQIREAEASAGYAAKSEIGWG---HQIRSY 324 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R +T VL G +D I L Sbjct: 325 VLQPYQLVKDLRTGITSTAPADVLDGNLDAFIAAALAQR 363 >gi|227545120|ref|ZP_03975169.1| peptide chain release factor RF2 [Lactobacillus reuteri CF48-3A] gi|300909208|ref|ZP_07126669.1| peptide chain release factor RF2 [Lactobacillus reuteri SD2112] gi|227184908|gb|EEI64979.1| peptide chain release factor RF2 [Lactobacillus reuteri CF48-3A] gi|300893073|gb|EFK86432.1| peptide chain release factor RF2 [Lactobacillus reuteri SD2112] Length = 332 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 107/337 (31%), Positives = 171/337 (50%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGDHNSDSEIRDLA 79 M++ + + + A + + K + + + DL ++ D +D Sbjct: 1 MAQPDFWNDNEQAQKVIAENNILKEKRDTFVNLRDQISDLETSLELLAVEPDDDLQKDFE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + L D K+ ILEI G GG+EA + L RMY R+ Sbjct: 61 ASFTNTQKALEQ-----YRLTQLLDGEYDAKNAILEIHPGAGGTEAQDWGEMLLRMYIRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + VE S D+ G K + I G F ++ E GVHR+ R+ +A+GR HT Sbjct: 116 GEQHAFSVETASYEAGDEAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDAAGRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE ++VDI D+R+DT R+SG+GGQH+N T+SAVRITHIPTGI+ + Sbjct: 176 SFASVDVMPELDDSVEVDIDPSDLRVDTFRSSGAGGQHINKTESAVRITHIPTGIVTSSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +E+SQ QNR+ AM +L+++LY++E ++ A +R+ Q IG G +IR+Y F Sbjct: 236 AERSQLQNRVTAMNMLKSKLYELEEEKKAKKRAEIEGEQLDIGWG---SQIRSYVFHPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + D+R + + V+ G +D I+ L ++ Sbjct: 293 LVKDNRTGYETHNGQAVMDGDLDPFIDAFLQWKLSQK 329 >gi|160878415|ref|YP_001557383.1| peptide chain release factor 2 [Clostridium phytofermentans ISDg] gi|160427081|gb|ABX40644.1| peptide chain release factor 2 [Clostridium phytofermentans ISDg] Length = 333 Score = 208 bits (530), Expect = 8e-52, Method: Composition-based stats. Identities = 108/330 (32%), Positives = 172/330 (52%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E D+ K +E + I+S+ + Q+ + L + + I ++ Sbjct: 1 MEEPNFWDSQEKSQAYMKELKNLKDIVSEYNGLKQQYDDILTLLEMGYEEEDPDLIPEIE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q I+ + L D D + IL + AG GG+E+ + L+RMY+R+ Sbjct: 61 QELEQFIDALEE-----LRLNTLLSDEYDKDNAILTLHAGAGGTESCDWASMLYRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + + E+L D ++ GYK + I+G + +K E GVHR+ R+ A+G+ T Sbjct: 116 ADKKGYTTELLDFLDGEEAGYKSVTLQINGLNAYGHLKSERGVHRLVRISPFNAAGKRQT 175 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+P +ID++I +D+RIDT R+SG+GGQHVN T SA+RITHIPTG +V Sbjct: 176 SFVSCDVMPDIEEDIDIEINDDDLRIDTYRSSGAGGQHVNKTSSAIRITHIPTGTVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ +AM++L+A+LY +++ A + S R +I + +IR+Y + Sbjct: 236 NERSQFQNKDKAMQMLKAKLYLKKKEENAAKESGIR-GEIRDINFGNQIRSYVLQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + VL G ID IN L Sbjct: 295 KDHRTNTDVSNALGVLDGNIDPFINAYLKW 324 >gi|298706071|emb|CBJ29181.1| peptide chain release factor [Ectocarpus siliculosus] Length = 789 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 85/356 (23%), Positives = 157/356 (44%), Gaps = 11/356 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ +E SE+ + + ++ + ++ + + E D TVI Sbjct: 111 AKLEGELEYLEGVSSEAEFWNDANSARKTLGDLNRLKLQLDRLHRWRGWEADAETVIELC 170 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENE---INYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + + ++ L+ + L D+ C L I AG GG+EA Sbjct: 171 GEEEGGDEETVAMLDEAMEALQLLQRDLDAWELQQLLSGKYDNCGCRLTIMAGAGGTEAQ 230 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+ R +K +++ + G K + G + + E G HR+ Sbjct: 231 DWAEMLQRMYIRFFQRRGFKYKMVEEESGEVAGIKSCEMQVEGDFAYGYLAGEKGTHRLV 290 Query: 187 RVPATEASGRVHTSAATVA---VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 R A + TS A V ++ + D+ +P ++ + TMR+ GSGGQ+VN ++ Sbjct: 291 RQSPFNAQAKRQTSFAGVESFPIIEQDDLSDLVVPEGELEVSTMRSGGSGGQNVNKVETG 350 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ HIPTGI V + E+SQ N+ A+ +L+ +L V +++ + + R + Sbjct: 351 VRMKHIPTGIAVRCTQERSQMLNKELALNMLKEKLVVVMQEQQTRDLAEIRGDMVE-ASW 409 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ++IR Y F + + D R +++ V+ G +D +I L A+ + A E Sbjct: 410 GQQIRNYVFHPYKLVKDTRTGAETVQVQDVMDGDLDALIEAYLRH--ARGLVGAEE 463 >gi|224101237|ref|XP_002312196.1| predicted protein [Populus trichocarpa] gi|222852016|gb|EEE89563.1| predicted protein [Populus trichocarpa] Length = 379 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 97/349 (27%), Positives = 169/349 (48%), Gaps = 5/349 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L+ A++E + ++S D K E A++ + KI + + K + ++ T++ Sbjct: 30 LEQELADLESKAADSSLWDDRAKAQETLLALTDVKDKIKLLAEFKTKVEEAETIVKLTEE 89 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 E I KE+ + ++ L D + +L I AG GG++A + Sbjct: 90 MDSTDAGFLEEATGIIKELNKALDKYELTQLLSGPYDKEGAVLSITAGAGGTDAQDWADM 149 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +++K +V+ SS ++ G K + GR + + E G HR+ R Sbjct: 150 LLRMYVRWGEKQRYKTKVVESSPGEEAGIKSATVEVEGRYAYGYLSGEKGTHRIVRQSPF 209 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDI--PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 + G TS + V V+P E +D+ P ED+ I T RA G GGQ+VN ++AVRITHI Sbjct: 210 NSKGLRQTSFSGVEVMPLLPEESMDVELPEEDLEISTSRAGGKGGQNVNKVETAVRITHI 269 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTG+ V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++IR Sbjct: 270 PTGVTVRCTEERSQLSNKIKALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRN 328 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 Y F + + D R + V+ G +D I L + + ++ Sbjct: 329 YVFHPYKLVKDVRTGHETSDIASVMDGELDPFIRAYLKHKYSMTLSASE 377 >gi|84393962|ref|ZP_00992702.1| peptide chain release factor 2 [Vibrio splendidus 12B01] gi|84375406|gb|EAP92313.1| peptide chain release factor 2 [Vibrio splendidus 12B01] Length = 303 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 163/307 (53%), Gaps = 12/307 (3%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++ I DQ ++ + L + + ++ E+ ++ + + Sbjct: 2 EAVVETIDQLDQGVEDVEGLLELAVEEEDQETFDEIEPE-----LAELEAKLEKLEFRRM 56 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D C +++++G+GG+EA + + RMY R+A + +K EV+ SD D G K Sbjct: 57 FAGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWADSKGFKTEVIEVSDGDVAGLKG 116 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLED 221 ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI D Sbjct: 117 ATVRISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNITIDINPSD 176 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++ Sbjct: 177 LRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFEL 236 Query: 281 ERKRMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 E ++ E+ S K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 EIQKQNAEKQASEETKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDK 293 Query: 339 IINPLLT 345 I L Sbjct: 294 FIEASLK 300 >gi|302762182|ref|XP_002964513.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii] gi|300168242|gb|EFJ34846.1| hypothetical protein SELMODRAFT_64370 [Selaginella moellendorffii] Length = 366 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 93/347 (26%), Positives = 167/347 (48%), Gaps = 5/347 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L + + A++E + S+ + K + + ++ I ++++Y + + D Sbjct: 19 LLDSADLEQQEAVLADLENQASDPAFWEERSKAQKILSELNEIKDRVNLYKTFRAKVDDA 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ ++E I + L T D + + I AG GG Sbjct: 79 QCIVELLEEMESPDAALKLEAAETVSWITAAMDRFELNKLLSGTYDKEGARITITAGAGG 138 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 ++A + L RMY+R+A +K V+ SS ++ G K I GR + + E G Sbjct: 139 TDAQDWAEMLLRMYQRWATRSGFKSTVVESSPGEEAGIKSATLEIDGRYAYGYISGEKGT 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HR+ R + G TS A V V+P E +EI+V+IP D+ I T R+ G GGQ+VN Sbjct: 199 HRLVRQSPFNSKGLRQTSFAGVEVMPLLEESEIEVEIPEGDLEITTCRSGGKGGQNVNKV 258 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++AVR+THIPTGI + S E+SQ QN+++A+ +L+++L + ++ A E R + Sbjct: 259 ETAVRVTHIPTGIALRCSEERSQLQNKIKAIALLKSKLLVILEEQRAAEIKEIR-GDVVK 317 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + ++IR Y F + + D R N+ + ++ G ++ ++ L Sbjct: 318 AEWGQQIRNYVFHPYKLVKDLRTNVETSDISGIMDGNLEPLLTAYLM 364 >gi|113953765|ref|YP_731847.1| peptide chain release factor 2 [Synechococcus sp. CC9311] gi|113881116|gb|ABI46074.1| peptide chain release factor 2, programmed frameshift [Synechococcus sp. CC9311] Length = 375 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 88/342 (25%), Positives = 163/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + ++E ++ + ++ + + +++ + D + Sbjct: 26 DVPALNAKQQDLEQLAAQPDFWNDQQNAQKQMRRLDEVKAQLQQLVDWRGAIDDGQATLE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 H + + + E ++R+ + L D + +L I AG GG++A Sbjct: 86 LHELEPD--EDLLGEAQQGLNQLRQALDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + V V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 144 WAQMLLRMYTRWAEDQGMSVSVNELSEGEEAGIKSTTIEIEGRYAYGYLRNEKGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A V V+P+ E+++DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 204 ISPFNANDKRQTSFAGVEVMPKLDEEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 264 LHVPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G ++ I LL Sbjct: 323 IRNYVFHPYQMVKDLRTQEETTDVQGVMDGDLNPFIQALLRQ 364 >gi|103488652|ref|YP_618213.1| peptide chain release factor 2 [Sphingopyxis alaskensis RB2256] gi|98978729|gb|ABF54880.1| bacterial peptide chain release factor 2 (bRF-2) [Sphingopyxis alaskensis RB2256] Length = 375 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 107/341 (31%), Positives = 165/341 (48%), Gaps = 16/341 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ ++ + D E + I+ +++ + +L + Sbjct: 30 RRLDELNAKVEDPTLWDNPKAAQDVMRERRRLDEAITATRAIERECADTAELIELAEMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + E +A + E L D +E+ AG GG+E+ + Sbjct: 90 D-----EAMVDEAVASLAALAARAEEDKVKALLAGEADGNDAYIEVHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R KVE++ + G K + G + K ESGVHR+ R+ Sbjct: 145 MLQRMYMRWAEKRGMKVELIEYQAGEQAGIKSATMLVKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P I+++I D++IDT RASG+GGQHVNTTDSAVRITHI Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDNIEIEINEGDLKIDTYRASGAGGQHVNTTDSAVRITHI 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +L+ARLY+ E ++ S K +IG G +I Sbjct: 265 PTGIVVASQNDRSQHKNRATAMGMLKARLYEAELQKREAAASGEYQAKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + + D R +T VL G +D + L+ Sbjct: 322 RSYVLQPYQLVKDLRTGVTSTAPGDVLDGALDPFMAAALSQ 362 >gi|311107121|ref|YP_003979974.1| peptide chain release factor [Achromobacter xylosoxidans A8] gi|310761810|gb|ADP17259.1| peptide chain release factor 2 [Achromobacter xylosoxidans A8] Length = 300 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ + +L + + D+ + + +LE + + + + Sbjct: 2 VETLTALGSGLADSNELFELAASDDDDATLE----SIEQDADAFQEKLEA-LEFRRMFSN 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C L+I+AG GG+EA + L R Y +YA + +K EVL SD D G K Sbjct: 57 PADPLNCFLDIQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEVLEESDGDVAGLKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G F ++ E+GVHR+ R ++SG HTS A+V V PE +V++ D+R+ Sbjct: 117 KIEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH+NR AM++L+++LY++E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRLTHIPTGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 E+ + K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 NRMAEQQKLEDSKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQ 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|51473471|ref|YP_067228.1| peptide chain release factor 2 [Rickettsia typhi str. Wilmington] gi|51459783|gb|AAU03746.1| peptide chain release factor 2 (RF-2) [Rickettsia typhi str. Wilmington] Length = 340 Score = 208 bits (530), Expect = 9e-52, Method: Composition-based stats. Identities = 101/340 (29%), Positives = 176/340 (51%), Gaps = 14/340 (4%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSD 72 R E+E ++ + + I K+++++ K +D+ + + + +D Sbjct: 2 RLTELEELTADPSLWNNNANAQILLREKTNIEEKLNVFNNLKSNFEDILELEAMAEVEND 61 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E + + + + +LE L D D +C LEI AG GG+E+ + + Sbjct: 62 FETLNQIEQDFKKLSIIAAKLET----ECLFSDESDYNNCFLEINAGAGGTESHDWASIM 117 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A +K ++++ + ++ G K I G+ + K E+GVHR+ R+ Sbjct: 118 MRMYLRFAERLGFKTQIINMINGEEVGIKSCTIRIIGKRAYGWFKTEAGVHRLVRISPFN 177 Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPT Sbjct: 178 AAGKRMTSFASSWVYPEIDDDIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPT 237 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRT 308 + S++SQH+N+ +AMK+L+A+LY +E ++ + ++ K G +IR+ Sbjct: 238 NTVTQCQSDRSQHKNKAQAMKMLQAKLYKLEMQKRTDSVDKQNANKTDNSWG---HQIRS 294 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 Y + + D R + + VL G +++ ++ L + Sbjct: 295 YVLQPYQIVKDLRTDYETSDTKGVLDGNLENFVSASLAMN 334 >gi|294629650|ref|ZP_06708210.1| peptide chain release factor 2 [Streptomyces sp. e14] gi|292832983|gb|EFF91332.1| peptide chain release factor 2 [Streptomyces sp. e14] Length = 371 Score = 208 bits (529), Expect = 9e-52, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 168/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A+ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELTAVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K EV +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQRGYKTEVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTDFEVGNPEAVFNGEIDGFLEAGIRWRKQQ 366 >gi|257063623|ref|YP_003143295.1| peptide chain release factor 2 [Slackia heliotrinireducens DSM 20476] gi|256791276|gb|ACV21946.1| peptide chain release factor 2 [Slackia heliotrinireducens DSM 20476] Length = 369 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 103/348 (29%), Positives = 166/348 (47%), Gaps = 8/348 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + ++ ++ ++ + + S + S + Y+ +D T Sbjct: 27 INENESLLEKLNEEIASPDFWNDSQNALQVSKRASEVRSILDEYEHVASLLEDARTADEL 86 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + + + LE D I+ I G GG EA + Sbjct: 87 SADDEMFAEERDELRRQLSDLLDGLEV----SSWFSGEMDPCDAIVSINPGQGGLEAQDW 142 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V L++MY +YA + WKV +L + + G V I G+ + ++ E+GVHR+ R+ Sbjct: 143 VDMLYKMYSKYAEKKGWKVRLLDITPGEVIGLDRAVIQIEGKNAYGMLRSENGVHRLVRI 202 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R T+ A V VLP EI+VD+ + D+R+D R+SG GGQ VNTTDSAVR+T Sbjct: 203 SPTDDKKRRQTTFAGVEVLPVVDDEIEVDLNVNDVRVDVYRSSGPGGQCVNTTDSAVRLT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGI+V ++KSQ QN+ A KVLRA+LY++ER++ E A R ++ +I Sbjct: 263 HIPTGIVVTCQNQKSQLQNKDAAFKVLRAKLYELERQKREEEIDALRGERM-DNSFGSQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 R Y + + D R + ++ VL G I++ + A+ + Sbjct: 322 RNYVLYPYQLVKDLRSGIETGNVDAVLSGDIEEFVIGYHRWRVAQRLA 369 >gi|84494447|ref|ZP_00993566.1| peptide chain release factor 2 [Janibacter sp. HTCC2649] gi|84383940|gb|EAP99820.1| peptide chain release factor 2 [Janibacter sp. HTCC2649] Length = 370 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 104/354 (29%), Positives = 172/354 (48%), Gaps = 15/354 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++E +++ D K + +S ++ + DL ++ Sbjct: 24 DLTALEATIADLEEQVAAPDLWDDQEKAQAVTSLLSRAKAEYDRVTGMDTKVDDLEALVE 83 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D+E A+ E+ ++K + ELE L D++S ++ IRAG GG +A Sbjct: 84 MGQEENDAETLLEAEKELKIVKKAVGELEV----RTLLSGEWDERSAVVTIRAGAGGVDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V+ +S ++ G K ++ F + E G HR+ Sbjct: 140 ADFAEMLMRMYLRWAERHGYPTKVMDTSYAEEAGIKSATFEVNVPYAFGNLSVEGGTHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS V V+P ++IP D++ID R+SG GGQ VNTTDSAV Sbjct: 200 VRISPFDNQGRRQTSFVAVEVIPLIEGTDSIEIPENDLKIDVFRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 R+THIPTG +V+ +EKSQ QNR A++V+++RL ++R E +A +K G Sbjct: 260 RMTHIPTGTVVSMQNEKSQIQNRAAALRVMQSRLLLLKR----AEEAAVKKEMAGDVKAS 315 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + + + D R V G ID I + A+ + Sbjct: 316 WGDQMRSYVLNPYQMVKDLRTEFETGNPTAVFDGDIDGFIEAGIRWQIAERKAA 369 >gi|302524557|ref|ZP_07276899.1| peptide chain release factor 2 [Streptomyces sp. AA4] gi|302433452|gb|EFL05268.1| peptide chain release factor 2 [Streptomyces sp. AA4] Length = 376 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 98/345 (28%), Positives = 160/345 (46%), Gaps = 8/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ + AE+E + S D + + + +S +++ + +Q DL + Sbjct: 33 DLEALRAQVAELEEQASSPTLWDNVEEAQKVTSQLSHRQAELRRVSELRQRLDDLGVLYE 92 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + E + + + L DD++ ++ IR+ GG +AA Sbjct: 93 LAADEGDSGSMTEAEGDLADLAKDI--DALEVRTLLSGEYDDRNAVVNIRSEAGGVDAAD 150 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + +V S ++ G K ++ V+ + E G HR+ R Sbjct: 151 FAEMLLRMYLRWAERHGYPTDVFDISYAEEAGIKSATFKVTAPYVYGTLSVEQGTHRLVR 210 Query: 188 VPATEASGRVHTSAAT-VAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A + VDIP +DIR+D R+SG GGQ VNTTDSAVR+ Sbjct: 211 ISPFDNQSRRQTSFAHVEVLPEVEEVDHVDIPEKDIRVDVYRSSGPGGQSVNTTDSAVRL 270 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTGI+V +EKSQ QN+ AMKVL+ARL +++ E A + G + Sbjct: 271 THIPTGIVVSCQNEKSQLQNKAAAMKVLQARLLQRKKEEERAEMDALKD---GGSSWGNQ 327 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y + + D R + VL G ID + + + Sbjct: 328 MRSYVLHPYQMVKDLRTEFEVGNPTAVLDGDIDGFLEAGIRWRKQ 372 >gi|86147405|ref|ZP_01065718.1| peptide chain release factor 2 [Vibrio sp. MED222] gi|218708550|ref|YP_002416171.1| peptide chain release factor 2 [Vibrio splendidus LGP32] gi|85834833|gb|EAQ52978.1| peptide chain release factor 2 [Vibrio sp. MED222] gi|218321569|emb|CAV17521.1| Peptide chain release factor 2 [Vibrio splendidus LGP32] Length = 303 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 102/307 (33%), Positives = 162/307 (52%), Gaps = 12/307 (3%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++ I DQ ++ L + + ++ E+ ++ + + Sbjct: 2 EAVVETIDQLDQGVEDVDGLLELAVEEEDQETFDEIEPE-----LAELEAKLEKLEFRRM 56 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D C +++++G+GG+EA + + RMY R+A + +K EV+ SD D G K Sbjct: 57 FSGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWADSKGFKTEVIEVSDGDVAGLKG 116 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLED 221 ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI D Sbjct: 117 ATVRISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNITIDINPSD 176 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++ Sbjct: 177 LRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFEL 236 Query: 281 ERKRMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 E ++ E+ S K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 EIQKQNAEKQASEETKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDK 293 Query: 339 IINPLLT 345 I L Sbjct: 294 FIEASLK 300 >gi|311243768|ref|XP_003121185.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Sus scrofa] Length = 380 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 139/303 (45%), Positives = 205/303 (67%), Gaps = 5/303 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ + +K++E + ++ D + D +R LA+ E+++ +KEI +L+++I LL+P Sbjct: 63 ELVAVAKLLTEKERELLETEHLLHDESED--LRKLAENEIISCQKEIAQLKHQIVLLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E+L ++ GG + Sbjct: 121 SEEADENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFEILEYFPSEIGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR AMK LRA+LY + Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAMKKLRAKLYSLHL 300 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + ++R RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +LY L +QG +D+++ Sbjct: 301 EEETSKRYNARKVQVGTKGRSEKIRTYNFPQNRVTDHRINKSLYDLGTFMQGEYLLDELV 360 Query: 341 NPL 343 L Sbjct: 361 QSL 363 >gi|154253713|ref|YP_001414537.1| peptide chain release factor 2 [Parvibaculum lavamentivorans DS-1] gi|154157663|gb|ABS64880.1| peptide chain release factor 2 [Parvibaculum lavamentivorans DS-1] Length = 322 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 160/318 (50%), Gaps = 13/318 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + I + + + +L + + + + A + Sbjct: 1 MMRERTRLEEAIGRYRALEASLNDNLELIEMGEAEGDAAIVAEAEAALKAARDVAAE--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D +EI AG GG+E+ + L RMY R+A + +KVE++ D Sbjct: 58 --AEIETLLSGEADANDTYVEIHAGAGGTESQDWAQMLLRMYTRWAERKGYKVELMERHD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 ++ G K + G F +K ESGVHR+ R+ +++ R HTS ++V V P +I Sbjct: 116 GEEAGIKSATILVKGHNAFGWLKTESGVHRLVRISPYDSAARRHTSFSSVWVYPVVDDKI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D+++ D+RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V +E+SQH+NR A + Sbjct: 176 DIEVSEADVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVACQNERSQHKNRATAWDM 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E ++ + +A K IG G +IR+Y + + D R + + Sbjct: 236 LRARLYEAELQKREDAAAAQASGKTDIGWG---HQIRSYVLQPYQMVKDLRTGVETSDTD 292 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +D + L A Sbjct: 293 GVLGGDLDPFMAAALAAR 310 >gi|332671116|ref|YP_004454124.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484] gi|332340154|gb|AEE46737.1| peptide chain release factor 2 [Cellulomonas fimi ATCC 484] Length = 382 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 170/351 (48%), Gaps = 15/351 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD-- 68 LK + A + + S D + +A+S +++ + DL T++ Sbjct: 40 ALKAKIALLSEQASVPNLWDDPDAAQKVTSALSATQAELDRVAKLGGRIDDLETLVELGV 99 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + A++E+ I K++ ELE L D + ++ IR+G GG +AA F Sbjct: 100 EMEDEDSLAEAEVELTGIRKDLGELEV----RTLLNGEYDQREAVVTIRSGAGGVDAADF 155 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + VL +S ++ G K + F + E+G HR+ R+ Sbjct: 156 AEMLLRMYLRWAERHGYPTTVLDTSYAEEAGLKSATFEVKAPYAFGHLSVEAGTHRLVRI 215 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P ++IP +I++D R+SG GGQ VNTTDSAVR+T Sbjct: 216 SPFDNQGRRQTSFAAVEVIPLIEQTDSIEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMT 275 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSE 304 HIPTGI+V+ +EKSQ QNR A++VL++RL V E A +K G + Sbjct: 276 HIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLVR----KAEEDAKKKELAGDIKASWGD 331 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + + D R + V G IDD I + +++ + + Sbjct: 332 QMRSYVLQPYQMVKDLRTEHEVGNPSAVFDGDIDDFIEAGIRWRRSQSVEA 382 >gi|313906145|ref|ZP_07839494.1| peptide chain release factor 2 [Eubacterium cellulosolvens 6] gi|313469032|gb|EFR64385.1| peptide chain release factor 2 [Eubacterium cellulosolvens 6] Length = 332 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 100/332 (30%), Positives = 175/332 (52%), Gaps = 6/332 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + + ++ + + + Y + ++D+ +I + + + E Sbjct: 1 MEEPDFWNNPDEAQKQTKELGDLKNDRDTYAKLVSTKEDIEMMIEMGEEEDD--ESIVPE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V + + E + + L + D + I+ + AG GG+EA + G L+RMY R+A Sbjct: 59 VREMLDDFIETLDGVRIKTLLSEEYDVNNAIIRLNAGAGGTEAMDWCGMLYRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +E L + D+ G K ++ ++G + +K ESGVHR+ R+ A + TS Sbjct: 119 KGFAIEELDMQEGDEAGIKSVMFQVNGTNAYGLLKSESGVHRLVRISPFNAQAKRQTSFV 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE +ID+++ EDIR+DT R+SG+GGQH+N T SA+RITH+PTGI+V +E+ Sbjct: 179 SCDVMPELNDDIDIEVRDEDIRVDTYRSSGAGGQHINKTSSAIRITHLPTGIVVTCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ +AM+VL+A+LY +E+++ A + + R ++ +IR+Y + D Sbjct: 239 SQFQNKDKAMQVLKAKLYMLEQEKQAEKAAGIR-GEVTDIAWGHQIRSYVLQPYTMVKDL 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R N + VL G +D IN L + Sbjct: 298 RTNAEKAQASAVLDGDLDPFINAYLKWQALRK 329 >gi|225020766|ref|ZP_03709958.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii ATCC 33806] gi|224946468|gb|EEG27677.1| hypothetical protein CORMATOL_00773 [Corynebacterium matruchotii ATCC 33806] Length = 368 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 102/345 (29%), Positives = 164/345 (47%), Gaps = 9/345 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 DL +R E+ + ++ D + + +S + ++ + DL + Sbjct: 26 ADLSDRARELAAKAADPSLWDDPEHAQQVTSELSQVQVQLKRLQSLRSRLTDLPIMYELA 85 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E D+A E+ + +I LE D + ++ IR+G GG +AA + Sbjct: 86 EEEGEGADIADEELADLRADIDALEVTTM----LSGEYDSREALINIRSGAGGVDAADWA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + KVEV S ++ G K + G ++ + E GVHR+ R+ Sbjct: 142 EMLMRMYIRWAEKQGRKVEVYDISYAEEAGIKSATFIVHGEYMYGTLSVEQGVHRLVRIS 201 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + R TS A V VLP +DIP ++R+D R+SG GGQ VNTTDSAVR+TH Sbjct: 202 PFDNQARRQTSFAEVEVLPVVEITDHIDIPDSELRVDVYRSSGPGGQSVNTTDSAVRLTH 261 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +EKSQ QN+ A++VL+A+L + +R+ E A G+ ++R Sbjct: 262 IPTGIVVTCQNEKSQIQNKASALRVLQAKLLERKRQEERAELDAL--GAGGNASWGNQMR 319 Query: 308 TYNFSQ-GRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 Y + D R + + VL G +D + + + + Sbjct: 320 NYVLHPFQMVKDLRTGFEVGDPQKVLDGDLDKFLEAGIRWRKGQH 364 >gi|99080709|ref|YP_612863.1| peptide chain release factor 2 [Ruegeria sp. TM1040] gi|122984362|sp|Q1GIB5|RF2_SILST RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|99036989|gb|ABF63601.1| bacterial peptide chain release factor 2 (bRF-2) [Ruegeria sp. TM1040] Length = 374 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 160/339 (47%), Gaps = 6/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E R+ + D + ++ + Y +Q+ QD +I + + Sbjct: 31 RLEEFNARVEDPNLWDDPAAAQKLMRDRQSLVDAMDTYKSIRQDLQDSVELIELGEMEED 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + K ++E + L D LEI+AG GG+EA + L R Sbjct: 91 AE--VVKDAEDTLKALKEKAAQKELEALLDGETDPNDAFLEIKAGAGGTEACDWASMLAR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A R + VE+ + G K I G + +K ESG HR+ R+ Sbjct: 149 MYVRWAESRGFSVELQEEQAGAEAGIKSATYQIKGHNAYGWLKSESGTHRLVRISPFGK- 207 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 G TS A V P I++++ DIRIDT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 208 GTRETSFAAVGAYPVIDDNIEIEVNPADIRIDTYRSSGAGGQHVNTTDSAVRITHEPTGI 267 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E R E +A + + G +IR+Y Sbjct: 268 VVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNAEVNALHEAK-GDAGWGNQIRSYVMQP 326 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R N + VL G +D + L A Sbjct: 327 YQMVKDLRTNHETADTKGVLDGDLDGFMAATLAMKVAGK 365 >gi|24216466|ref|NP_713947.1| peptidyl-tRNA hydrolase [Leptospira interrogans serovar Lai str. 56601] gi|59798086|sp|Q8EZT4|RF2_LEPIN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|24197768|gb|AAN50965.1| peptidyl-tRNA hydrolase involved in peptide chain release [Leptospira interrogans serovar Lai str. 56601] Length = 367 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 169/345 (48%), Gaps = 16/345 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + K+R + + + + + +++ + ++ Q + DL + Sbjct: 29 LEQDKDRLKSLTEKAEDPNLWNNPEEARLVSQKKNELEKKLNPWFTIQQDILDFPDLVDL 88 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D ++ + +L+ EK + L K+ +D K L I G GG+E+ Sbjct: 89 TLDEKGENGVGELSSEYNRLQEKFEE-----LELLGALKNPEDLKPAFLNIHPGAGGTES 143 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY RY + ++ ++ D G K + G F +K E+GVHR+ Sbjct: 144 QDWAEMLLRMYTRYFEKKGYQYSLIDVQAGDGAGIKNATLHVIGDFAFGFLKGENGVHRL 203 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS +V V P +ID+ I +DIR+D R+SG+GGQHVNTTDSAV Sbjct: 204 VRISPFDANKRRHTSFVSVHVSPEIDDDIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAV 263 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD--VERKRMANERSANRKLQIGSGD 301 RITH+P+GI+V +E+SQ +NR A K+L+ARLY+ E+ + E+ + K I G Sbjct: 264 RITHMPSGIVVACQNERSQIKNRDTAFKMLKARLYELEQEKAKEELEKKSGEKKDIAWG- 322 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + + V+ G I+ I L Sbjct: 323 --SQIRSYVFHPYNLVKDHRTDHETGNVAAVMDGDIEPFILAYLK 365 >gi|87200328|ref|YP_497585.1| peptide chain release factor 2 [Novosphingobium aromaticivorans DSM 12444] gi|87136009|gb|ABD26751.1| bacterial peptide chain release factor 2 (bRF-2) [Novosphingobium aromaticivorans DSM 12444] Length = 375 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 165/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D K E + I ++ Q+ + + + Sbjct: 30 RRLDELNARVEDPKLWDDPKKAEEVMRERRRLEASIGTVNQIGQEMADAIEFVELGEMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + I + E+ + L D + LE+ AG GG+E+ + Sbjct: 90 DEDTINEGLATLAALAERA-----DNDKVQALLAGEADANNAFLEVHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A +KVE++ + G K I G + K ESGVHR+ R+ Sbjct: 145 MLQRMYTRWAERHGYKVELVDYHAGEAAGIKSATLLIKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V PE + +V+I D++IDT RASG+GGQHVNTTDSAVRITH+ Sbjct: 205 YDSSARRHTSFSSVWVYPEIDDNIEVEINPADLKIDTYRASGAGGQHVNTTDSAVRITHV 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +L+AR+Y+ E + S K +IG G +I Sbjct: 265 PTGIIVASQNDRSQHKNRATAMGMLKARIYEAELAKREAAASGEYAAKTEIGWG---HQI 321 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y ++ D R + VL G +D + L+ Sbjct: 322 RSYVLQPYQQVKDLRTGVVSTNPTEVLDGALDPFMAAALSQR 363 >gi|86143360|ref|ZP_01061762.1| Peptide chain release factor 2 [Leeuwenhoekiella blandensis MED217] gi|85830265|gb|EAQ48725.1| Peptide chain release factor 2 [Leeuwenhoekiella blandensis MED217] Length = 368 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 95/363 (26%), Positives = 168/363 (46%), Gaps = 24/363 (6%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ QI DL R + E + + + + + + Sbjct: 1 MITSDQIKDLVQRLDALKMHLGIDQKRVEIQNEEEKTFDPNFWNDPKEAEQFMRMLREKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + + Y+Q +DL ++ H + + + + + +E + + D Sbjct: 61 NWVKDYEQAVTLTEDLEVLLEFHKEGDASEEEVDKQYDKVTRLVEAME----FKNMLSDE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 DD S +L+I AG GG+E+ + L RMY ++ +KV+ L+ + D G K + Sbjct: 117 GDDLSAVLQITAGAGGTESCDWASMLMRMYLMWSEKNGFKVKELNYQEGDVAGIKTVTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI DI D Sbjct: 177 IEGAYAFGWLKSENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDSIEIDINPADISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 R+SG+GGQ+VN ++ +TH PTGI++ S +SQ +NR +AM++L+++LY++E K+ Sbjct: 237 FARSSGAGGQNVNKVETKAILTHHPTGIVIHNSETRSQLENREKAMQMLKSQLYEIELKK 296 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPL 343 R + S + +IR Y + I D R + VL G +D+ + Sbjct: 297 RQAARDEIE-AEKKSIEWGSQIRNYVLHPYKLIKDVRTGEETGNTDAVLDGDLDNFLKAY 355 Query: 344 LTA 346 L Sbjct: 356 LMM 358 >gi|159898428|ref|YP_001544675.1| peptide chain release factor 2 [Herpetosiphon aurantiacus ATCC 23779] gi|159891467|gb|ABX04547.1| peptide chain release factor 2 [Herpetosiphon aurantiacus ATCC 23779] Length = 337 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 99/335 (29%), Positives = 163/335 (48%), Gaps = 10/335 (2%) Query: 18 EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 ++E + +E D + ++ + ++ ++D + L ++ D++ Sbjct: 3 DLEHQAAEPSLWDNPQQAQSILQRLARMQEELKMWDSLAVDLATLRDLLQLSADDADSLS 62 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + EV + K + +LE +L + D + + I++G GG E+ + L RMY Sbjct: 63 QIEREVNGLTKSVDQLEL----SILLGEKYDSTNAFISIQSGAGGVESQDWAQMLLRMYS 118 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+ + ++ ++ D ++ G K + G + K E+G+HR+ R+ +A+ R Sbjct: 119 RWGESQGFRTTIVDMMDGEEAGIKSATLELRGPYAYGYAKAEAGIHRLVRLSPFDANHRR 178 Query: 198 HTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---- 252 HTS A V VLPE + +V I ED+R+D RA G GGQ VNTTDSAVR+ + Sbjct: 179 HTSFARVEVLPEVDDAAEVKINPEDLRVDVYRAGGHGGQGVNTTDSAVRLVYRGGTPDEI 238 Query: 253 IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 I+ +E+SQ QN+ AM VLRARL + E R ER+ K + +IR+Y Sbjct: 239 IVTCQNERSQLQNKETAMNVLRARLLERELARQVAERAKL-KGEHRDAAWGNQIRSYVLD 297 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+ DHR N+ + VL G ID I+ L Sbjct: 298 DRRVKDHRTNVETSNTQAVLDGEIDLFIDAFLRWR 332 >gi|37520802|ref|NP_924179.1| peptide chain release factor 2 [Gloeobacter violaceus PCC 7421] gi|35211797|dbj|BAC89174.1| peptide chain release factor [Gloeobacter violaceus PCC 7421] Length = 354 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 12/339 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPII---SKISIYDQKKQEEQDLHTVIGDHNS 71 R A +E + S D + ++ + + + + + + ++ + Sbjct: 19 RIAALEQQASAPDFWDDQAAAQKALQNLNNLKQPLEQFGRWRNLLSDAEVVLELVQETGD 78 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +S + + + + + L D++ IL I AG GG++A + Sbjct: 79 ESLLPEAEGNIEALVGEL-----DRWELEQLLSGPYDERGAILSINAGAGGTDAQDWAEM 133 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + ++ +L S+ ++ G K I GR + + E G HR+ R+ Sbjct: 134 LLRMYTRWAERQGYQAHLLELSEGEEAGVKSATLEIDGRYAYGYLSAEKGTHRLVRISPF 193 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+ + TS A V V+P + VDI +DI IDT R+ G GGQ+VN ++ VR+TH P Sbjct: 194 NANDKRQTSFAGVEVMPVLDDSVQVDIRPDDIEIDTFRSGGKGGQNVNKVETGVRVTHKP 253 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI V + E++Q QNR +AM++L+ARL +E ++ S R + +IR+Y Sbjct: 254 TGISVRCTQERAQLQNRNKAMEMLKARLLVLEEEKRQQHLSDIRGEAV-DAAWGNQIRSY 312 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R + V+ G I+ I L Sbjct: 313 VFHPYQMVKDLRTEEETSDVTGVMNGKIEPFIERYLRRQ 351 >gi|194337758|ref|YP_002019552.1| peptide chain release factor 2 [Pelodictyon phaeoclathratiforme BU-1] gi|194310235|gb|ACF44935.1| peptide chain release factor 2 [Pelodictyon phaeoclathratiforme BU-1] Length = 363 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 102/346 (29%), Positives = 169/346 (48%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKK---QEEQDLHT 64 + + K + ++E + + + ++ S Y++ + QD Sbjct: 23 DVDERKEKIEDLEKISFDPAFWNDQKAANKVLKELNEHKSWTDAYEKIILKARSCQDEFD 82 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + +S +L + I + I + + DD + ++ I AG GG+E Sbjct: 83 IAIELDDESFGEELTAL-----IASIEHDISAIEFKNMLSGKDDAGNAMITIHAGAGGTE 137 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+A + +K+ + D G K I G + +K E+GVHR Sbjct: 138 AQDWAEMLYRMYMRWAERKGFKIYTDDYQEGDGAGIKTATLEIEGPYAYGYLKAENGVHR 197 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + RV +++ R HTS A+V PEA ++D+ ED+ + T R+ G GGQ+VN ++A Sbjct: 198 LVRVSPFDSNARRHTSFASVFTYPEAPPDVEIDVRKEDLELSTFRSGGKGGQNVNKVETA 257 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRI H+PTGI+V E+SQ QNR RAMK+L A+LY +R + +K +I G Sbjct: 258 VRIKHLPTGIVVGCQEERSQFQNRERAMKMLMAQLYQRQRDEEDARKREIEGKKKKIEWG 317 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI DHR N + +E VL G +D+ + L+ Sbjct: 318 ---SQIRSYVLDDRRIKDHRTNYERFDVETVLDGDLDEFMEKYLSE 360 >gi|312130867|ref|YP_003998207.1| bacterial peptide chain release factor 2 (brf-2) [Leadbetterella byssophila DSM 17132] gi|311907413|gb|ADQ17854.1| bacterial peptide chain release factor 2 (bRF-2) [Leadbetterella byssophila DSM 17132] Length = 358 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 161/343 (46%), Gaps = 12/343 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + K + ++E + ++ + I + + Y++ + DL T+ + Sbjct: 23 DNRKEKLGDLENQQAQPEFWNDSDHAQTVVKEIQVLKNWTEAYEEAEASISDLETLFEFY 82 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E + I ELE + +D S I+EI +G GG+E+ + Sbjct: 83 QEGEVEEEEVDTEAKKTVQIIEELEL----KKMLSSEEDQFSAIIEINSGAGGTESQDWA 138 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY +A +KV + +D D G K I G + +K E+GVHR+ R+ Sbjct: 139 SMLYRMYLMWAQKHGYKVTQVDWTDGDGAGIKSASMQIDGPLAYGYLKSENGVHRLVRIS 198 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V P I+V++ DI T R+ G+GGQ+VN ++ V++TH Sbjct: 199 PFDSNARRHTSFASVYAYPLVDDTIEVEVKDADIEWQTSRSGGAGGQNVNKVETKVQLTH 258 Query: 249 IPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSER 305 PTGI+ V E+SQ N+ AM +L++RLY +E ++ R+ K +I G + Sbjct: 259 KPTGIVIVCQIERSQLANKEHAMNMLKSRLYQIELEKRNAARADIEASKKKIEWG---SQ 315 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR Y F + + D R ++ V+ G IDD I L Sbjct: 316 IRNYVFHPYKLVKDARTGHETSDIQRVMDGEIDDFIKAYLMLD 358 >gi|78185691|ref|YP_378125.1| peptide chain release factor 2 [Synechococcus sp. CC9902] gi|78169985|gb|ABB27082.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus sp. CC9902] Length = 356 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 86/342 (25%), Positives = 164/342 (47%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ + ++ + + +++ + D + Sbjct: 7 DVPALNARQQDLEQLAAQPDFWNDQQNAQKQMRRLDEVKAQLQQLADWRSAIDDAKATLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +++ + E E+R+ + L D + +L I AG GG++A Sbjct: 67 LYELEAD--EEMLGEAQQGLTELRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A +V + S+ ++ G K + GR + ++ E G HR+ R Sbjct: 125 WAQMLLRMYTRWAEDHDMRVTIDEISEGEEAGIKSATIEVEGRYAYGYLRNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+ + TS A + V+P+ ++D+DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANDKRQTSFAGIEVMPKLEEDVDIDIPDKDLEVTTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTG+ V + E+SQ QN+ +AM +L+A+L + +++ A E + R I + Sbjct: 245 QHLPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRAAEIADIR-GDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G +D I+ L Sbjct: 304 IRNYVFHPYQMVKDLRTQEETNDVQAVMDGALDPFIDASLRQ 345 >gi|300932665|ref|ZP_07147921.1| peptide chain release factor 2 [Corynebacterium resistens DSM 45100] Length = 378 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 101/352 (28%), Positives = 165/352 (46%), Gaps = 10/352 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E+E R ++ D + + +S + K+ +Q +DL + Sbjct: 24 DLEALADSARELEDRAADPSLWDDPDHAQKVTSELSRVQGKLRKVKSLRQRLEDLPVMYD 83 Query: 68 DHNS----DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D + D A E+R+ + + D + ++ IR+G GG Sbjct: 84 MAEEAAAEDPDTADEAMEMADEERAELRKEIESLEVTTMLSGEYDQREAVVNIRSGAGGV 143 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A KV++ S ++ G K + G ++ + E G H Sbjct: 144 DAADWAEMLMRMYTRWAEKSGHKVDIYDISYAEEAGIKSATFVVHGEYMYGTLSVEQGAH 203 Query: 184 RVQRVPATEASG-RVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 R+ R+ + G + TS A V VLP +DIP ++R+D R+SG GGQ VNTTD Sbjct: 204 RLVRLSPFGSGGDKRQTSFAEVEVLPVVEQTDHIDIPDAEVRVDVYRSSGPGGQSVNTTD 263 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIPTGI+V +EKSQ QN+ AM+VL+A+L + +R+ E A G+ Sbjct: 264 SAVRLTHIPTGIVVTCQNEKSQIQNKASAMRVLQAKLLERKRQEERAELDAL--GAGGNA 321 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R N + VL G +D + + ++ Sbjct: 322 SWGNQMRSYVLHPYQMVKDLRTNYEVNDPSKVLDGDLDGFLEAGIRWRMSEQ 373 >gi|302551795|ref|ZP_07304137.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM 40736] gi|302469413|gb|EFL32506.1| peptide chain release factor 2 [Streptomyces viridochromogenes DSM 40736] Length = 368 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 167/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A+ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELAAVRKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQRGYKTEIYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHIPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWRKQQ 366 >gi|29831645|ref|NP_826279.1| peptide chain release factor 2 [Streptomyces avermitilis MA-4680] gi|81717933|sp|Q82D82|RF2_STRAW RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|29608761|dbj|BAC72814.1| putative peptide chain release factor 2 [Streptomyces avermitilis MA-4680] Length = 368 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 98/348 (28%), Positives = 167/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLSVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A++K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELTAVKKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQRGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVETTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L D R+ + A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLDRRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G I+ + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEYEVGNPEAVFNGEIEGFLEAGIRWRKQQ 366 >gi|149927857|ref|ZP_01916108.1| peptide chain release factor 2 [Limnobacter sp. MED105] gi|149823479|gb|EDM82710.1| peptide chain release factor 2 [Limnobacter sp. MED105] Length = 304 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 166/309 (53%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + ++ ++ + ++L + + D + + + EV EK I +LE + Sbjct: 2 LDGVVVTMNTVQSNISDSKELVEMA-EAEGDFDTLEAIESEVAEYEKVIADLE----FRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I AG GG+EA + L R Y RY + +KVEV+ SD + G K Sbjct: 57 MFSNPADPANCFIDITAGAGGTEAQDWASILLRQYLRYCERKGFKVEVMEQSDGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 + G F ++ E+GVHR+ R ++SG HTS A++ V PE +++I Sbjct: 117 SATIKVEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASLFVYPEVDDSFEIEINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH+NR A +L+A+LY+ Sbjct: 177 DVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVQCQNDRSQHRNRDEAWGMLKAKLYE 236 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y RI D R + + + VL G +D Sbjct: 237 FEMRKRMAEQQALEDTKTDVGWG---HQIRSYVLDNSRIKDLRTGVEISNTQRVLDGDLD 293 Query: 338 DIINPLLTA 346 I L Sbjct: 294 PFIEASLKQ 302 >gi|86133579|ref|ZP_01052161.1| peptide chain release factor 2 [Polaribacter sp. MED152] gi|85820442|gb|EAQ41589.1| peptide chain release factor 2 [Polaribacter sp. MED152] Length = 367 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 87/362 (24%), Positives = 166/362 (45%), Gaps = 24/362 (6%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R ++ E + + + + Sbjct: 1 MITQDQLKDISTRIDKLKSYLEIDKKLIEIANEEEKTANPDFWNDPKAAELVMKELRFKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y+ + +DL + D + + ++E + + D Sbjct: 61 KWVEDYNTIIRLNEDLIVFYEFYKEDEADEKDVVQQYEKTIALLEDIE----FKNMLSDE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D S +++I AG GG+E+ + LFRMY ++ + +K++ L+ D G K + Sbjct: 117 GDSLSAVIQITAGAGGTESCDWAEMLFRMYTMWSEKQGFKLKTLNYQAGDAAGIKTVTVE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 + G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI DI I Sbjct: 177 VEGDYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPVADDSIEIDINPADIEIT 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SG+GGQ+VN ++ V++TH P+GI + S+ +SQH NR AM++L+++LY++E ++ Sbjct: 237 TARSSGAGGQNVNKVETKVQLTHKPSGIQISCSNSRSQHDNRATAMQMLKSQLYEIELQK 296 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPL 343 R ++ + + +IR Y + + D R ++ V+ G I+ + Sbjct: 297 QQAARDDIEANKMKN-EWGSQIRNYVMHPYKLVKDVRTAHETGNVDAVMDGNINAFLKAY 355 Query: 344 LT 345 L Sbjct: 356 LM 357 >gi|329936498|ref|ZP_08286234.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus M045] gi|329304013|gb|EGG47895.1| peptide chain release factor 2 [Streptomyces griseoaurantiacus M045] Length = 368 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 101/348 (29%), Positives = 168/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A+ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELTAVRKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K EV +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQRGYKTEVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP V+I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPYDNQGRRQTSFAGVEILPVVEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHIPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTDFEVGNPEAVFNGEIDGFLEAGIRWRKQQ 366 >gi|307294100|ref|ZP_07573944.1| peptide chain release factor 2 [Sphingobium chlorophenolicum L-1] gi|306880251|gb|EFN11468.1| peptide chain release factor 2 [Sphingobium chlorophenolicum L-1] Length = 375 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 166/341 (48%), Gaps = 16/341 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D ++ E + I D +K + +L + Sbjct: 30 RRLDELNARVEDPTLWDNQKLAQEVMRERTRLEAAIGATRAIDSEKTDTAELIEMADAEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + ++ L D LEI AG GG+E+ + Sbjct: 90 DEDMVTEAIASLKALADRADE-----DKIKALLAGEADASDTYLEIHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +KVE++ D G K G + K ESGVHR+ R+ Sbjct: 145 MLSRMYRRWAERRGYKVELVDYQAGDQAGIKSATFLFKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P I++++ D++IDT RASG+GGQHVNTTDSAVRITH+ Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDNIEIEVNESDLKIDTYRASGAGGQHVNTTDSAVRITHV 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 P+GI+V + +++SQH+NR AM +L+ARLY+ E +R S K +IG G +I Sbjct: 265 PSGIIVASQNDRSQHKNRATAMNMLKARLYEAELRRREEAASGEYQAKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + + D R +T + VL G +D + L+ Sbjct: 322 RSYVLQPYQLVKDLRTGVTSTSPDDVLDGALDPFMAAALSQ 362 >gi|302560365|ref|ZP_07312707.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000] gi|302477983|gb|EFL41076.1| peptide chain release factor 2 [Streptomyces griseoflavus Tu4000] Length = 368 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 168/348 (48%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAAPSLWDNPEEAQKITSKLSHLQAEVRKAEGLRGRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ ++K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELTLVKKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K E++ +S ++ G K ++ + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQHGYKTELIETSYAEEAGIKSTTFSVQAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWRKQQ 366 >gi|15807620|ref|NP_293897.1| peptide chain release factor 2 [Deinococcus radiodurans R1] Length = 421 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 168/350 (48%), Gaps = 10/350 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I R E++ +S+ + + + + + Y + Q L ++ Sbjct: 73 DIPGKTRRLNELDRELSDPDLWNDQSRARQVTQEAGSVRKIVEEYAGLTSDAQGLSEMLD 132 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + L + E L D + I+ ++ G GG+EA Sbjct: 133 LADEEERELLEDEQAGLQKRVDDLYRE------TLFTMKHADTAAIVRVKGGAGGTEAQD 186 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + G L RMY R+A R +KV++L D GY+ I I G F M E GVHR+ R Sbjct: 187 WAGMLARMYMRWAERRGYKVDILDEVAGDQAGYQSIEFIIRGEKAFGMMAPEHGVHRLVR 246 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLED--IRIDTMRASGSGGQHVNTTDSAVR 245 V +++ R TS A+V V+PE E +++I + D +R D R+ G+GGQ VNTTDSAVR Sbjct: 247 VSPFDSNNRRQTSFASVDVVPEVPEEEINIHIPDSDLRRDVFRSQGAGGQGVNTTDSAVR 306 Query: 246 ITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+PTGI + +SQ +N A+++L+ RLYD+E K+ E A R Q + Sbjct: 307 LTHLPTGIAVACQITRSQIKNHELALQILKQRLYDIEMKKREAEELAARGQQ-AKVEWGS 365 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + I DHR L ++ + VL G +D+++ L K + Sbjct: 366 QMRSYVLDKQYIKDHRTGLMMHNPDDVLDGDLDELMWAGLEWMAGKRVAE 415 >gi|310778152|ref|YP_003966485.1| bacterial peptide chain release factor 2 (bRF-2) [Ilyobacter polytropus DSM 2926] gi|309747475|gb|ADO82137.1| bacterial peptide chain release factor 2 (bRF-2) [Ilyobacter polytropus DSM 2926] Length = 365 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 110/347 (31%), Positives = 174/347 (50%), Gaps = 17/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + +N+ E+E + + KL +E A+ II + ++ E L Sbjct: 25 DLEGKENKVKELEKETLKDGFWNDKRESEKLIKEMNALKEIIGEYRSIEKLSDEVSVLLE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + + ++ + LL D + I+ I +G GG+E Sbjct: 85 FVEMGEDEFLEE------LETKHRGLDKVIGAFDVKLLLDGEFDANNAIVTIHSGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+ R +K+ L + G K I + G + +K E G+HR Sbjct: 139 ACDWADMLYRMYSRWCNNRGYKITELDFMPGEMVGIKSITILVEGMRAYGYLKNEKGIHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ + HTS A+V V+PE D++I D++IDT RASG+GGQHVNTTDSA Sbjct: 199 LVRISPFDANKKRHTSFASVDVMPEVDETTDIEINTGDLKIDTYRASGAGGQHVNTTDSA 258 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRITH+P+G++V E+SQ QNR AMK+LR++L ++E K+ E + IG G Sbjct: 259 VRITHLPSGVVVTCQRERSQLQNRETAMKLLRSKLLELEMKKREEELKKIQGEQSDIGWG 318 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR + ++ V+ G IDD IN L Sbjct: 319 ---SQIRSYVFQPYTLVKDHRTLVESGNIKAVMDGDIDDFINGHLRW 362 >gi|67920292|ref|ZP_00513812.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501] gi|67857776|gb|EAM53015.1| Peptide chain release factor 2 [Crocosphaera watsonii WH 8501] Length = 358 Score = 208 bits (528), Expect = 1e-51, Method: Composition-based stats. Identities = 96/348 (27%), Positives = 162/348 (46%), Gaps = 7/348 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK ++E ++ D ++ + S++ Y Q + D + Sbjct: 13 DLPALKAVIKDLENTSAQPQFWDQPETAQTTLQELNDLKSQLEQYQQWCLQLDDTKAIAE 72 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + E ++ + L D K +L I AG GG++A Sbjct: 73 LLELEDD--ATLRQEAEDNIIQLNHNLDRWELQQLLSGIYDTKGAVLTINAGAGGTDAQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KV + S+ D+ G K I GR F +K E G HR+ R Sbjct: 131 WAQMLLRMYTRWGEQQGYKVHLTELSEGDEAGIKSATLEIEGRYAFGYLKGEKGTHRLVR 190 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A + ++P E ++ VDIP +D+ I T R+ G GGQ+VN ++AVR Sbjct: 191 ISPFNANGKRQTSFAGIEIMPALEEDDLKVDIPDKDLDISTSRSGGKGGQNVNKVETAVR 250 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H+PTGI V + E+SQ QN+ +A+ +L+A+L + ++ A E + R I Sbjct: 251 VVHVPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAEEQRAQEIAEIR-GDIVEAAWGT 309 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR Y F + + D R N+ + V+ G +D+ I L A Sbjct: 310 QIRNYVFHPYQMVKDLRTNIETTDVNGVMDGSLDEFIEAYLRFDTAPK 357 >gi|291517989|emb|CBK73210.1| bacterial peptide chain release factor 2 (bRF-2) [Butyrivibrio fibrisolvens 16/4] Length = 338 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 166/332 (50%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M +E ++ ++ I + +E +D + + D EI D Sbjct: 1 MEAPDFWTDAQVSTAKMKELKSMKDDVAVIDKLEDLYKEIEDYIELGNEEE-DQEIVDTV 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + E ++ L L D S I+ + +G GG EA +V L+RMY R+ Sbjct: 60 ALLIEEFENDLESL----RMKTLLSGEYDSDSAIVTLHSGAGGVEACDWVQMLYRMYSRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ + V+ L + D+ G K + ++G + +K E G+HR+ R+ A G+ T Sbjct: 116 ASDMGFAVDELDYQEGDEAGIKSVTFQVNGDNAYGYLKSEKGIHRLVRISPFNAQGKRQT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+ V+P+ E DV+I EDIRIDT R+SG+GGQH+N T SA+RITH PTGI+V Sbjct: 176 SFASCDVMPDIEEDVDVEIRDEDIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQ QN+ +AM++L+ +L ++++ A + S R +IG G+ +IR+Y Sbjct: 236 NERSQFQNKDKAMQMLKTKLLLLKQEENAAKASGIRGEVSEIGWGN---QIRSYVLQPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R + VL G + +N L Sbjct: 293 MVKDLRTGEESGNADAVLDGKLTPFMNAYLKW 324 >gi|213019226|ref|ZP_03335033.1| protein chain release factor b [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995335|gb|EEB55976.1| protein chain release factor b [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 337 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 108/339 (31%), Positives = 172/339 (50%), Gaps = 11/339 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 +K R E++ + S K E S I +I + + + + D +++ Sbjct: 1 MKLRLEELDSQASNDNLWQDNQKAQEILKERSKIKHEIESFSKLESDYNDSISLMRSAID 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ + EV ++ +L L D+ +C LEI +G GG+E+ + Sbjct: 61 END--EEFFSEVKGELVKLEKLIKLKETESLFTGEADNNNCFLEIHSGAGGTESNDWTEM 118 Query: 132 LFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A +KVEV+ D D G K I G + K ESGVHR+ R+ Sbjct: 119 LMRMYTRWAEIYHNFKVEVVEKLDGDAVGIKSTTIKIIGEKAYGWAKSESGVHRLVRISP 178 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +A+G+ HTS A+V V P + + +D++IDT RASG+GGQHVN T+SAVRITHI Sbjct: 179 FDANGKRHTSFASVGVTPVIEDSIDIVVDEKDLKIDTYRASGAGGQHVNKTESAVRITHI 238 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTG++ + +SQH+N+ A+K+L+ RLY +E ++ + + +K IG G +I Sbjct: 239 PTGVVAQCQNGRSQHKNKDEALKLLKGRLYQIELEKKEQKMAEEYGKKCDIGWG---SQI 295 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+Y + + D R + + V G ID I +L Sbjct: 296 RSYVMHPYQMVKDLRTGHEVGNINSVFDGNIDCFIVSVL 334 >gi|206601601|gb|EDZ38084.1| Peptide chain release factor 2 [Leptospirillum sp. Group II '5-way CG'] Length = 370 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 117/348 (33%), Positives = 170/348 (48%), Gaps = 21/348 (6%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 LK +I+ + D K+ E + + +S I D++ + + L + Sbjct: 17 DRLKVTLEQIDAQSQSPEFWKDSDRARKMLREKSRLEKRLSLIQGIDREDADIRALFELA 76 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 SD + V + ++ E + + D LEI G GG+E+ Sbjct: 77 ----SDPDFLAELSRRVPEFSESVKAFEL----EEILSEAKSDNPAFLEIHPGAGGTESQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A VEV+ ++ G K + G F + ESG+HR+ Sbjct: 129 DWAQMLLRMYIRWAERHGMTVEVIDIQSGEEAGIKSATILVRGEHAFGYLMSESGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ R HTS +V V PE ++ V+I EDIRIDT RAS +GGQHVN T SA+R Sbjct: 189 RISPFDANKRRHTSFTSVFVYPELEDDVPVEIRDEDIRIDTFRASSAGGQHVNKTSSAIR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER----SANRKLQIGSG 300 +TH+PTGI++ + +E+SQ QNR A KVLRA+LY++E KR E A K IG G Sbjct: 249 LTHLPTGIVISSQNERSQLQNREMAFKVLRAKLYELEEKRKKEELDKISGAQNKKDIGWG 308 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + I DHR L K+ VL G +D I L A Sbjct: 309 ---HQIRSYVLQPYQLIKDHRTGLETGKVSEVLDGDLDMFIRGYLLAR 353 >gi|224371835|ref|YP_002605999.1| PrfB [Desulfobacterium autotrophicum HRM2] gi|223694552|gb|ACN17835.1| PrfB [Desulfobacterium autotrophicum HRM2] Length = 329 Score = 208 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 107/328 (32%), Positives = 174/328 (53%), Gaps = 10/328 (3%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 +++ + T + + I I +D+ E +D T++ + + + ++ Sbjct: 1 MIAQEDFWNDPDTATAKLKERTRISDLIETWDKIFAEIEDAETLLELAHEEEDKEVEREV 60 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 E+ + + + ++ DD KS I+ I AG GG+++ + LFRMY R+ Sbjct: 61 ELQLNRLGQKVK--KFSVAIMLDGEDDTKSAIVSINAGAGGTDSQDWTEMLFRMYTRWID 118 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 + K++++ D+ G K + ++SG + +K ESGVHR+ R+ A G+ TS Sbjct: 119 KKGLKLQMIDYQPGDEAGIKGVTFSVSGEYSYGLLKVESGVHRLVRISPFNAGGKRQTSF 178 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V V PE EI V+I D+RID RASG+GGQHVN T SAVRITH+PTG++V E Sbjct: 179 ASVFVYPELKDEIRVEIDEGDLRIDVYRASGAGGQHVNKTSSAVRITHLPTGVVVQCQQE 238 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-I 316 SQH+N+ AMKVL++RLY +E+++ + + K I G +IR+Y R + Sbjct: 239 PSQHRNKEIAMKVLQSRLYQLEKEKQNRKMQDLHDTKDDIAWG---SQIRSYVLHPYRMV 295 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLL 344 DHR + + ++ VL G +D I L Sbjct: 296 KDHRTDYEVGDVDRVLDGDLDQFIEETL 323 >gi|159902739|ref|YP_001550083.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9211] gi|159887915|gb|ABX08129.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT 9211] Length = 356 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 91/331 (27%), Positives = 161/331 (48%), Gaps = 6/331 (1%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 ++E S+ + K +E + + +++ +D + + + + Sbjct: 16 KDLEQIASQPEFWNDQQKAKKEMRRLDEVKAQLKKLVDWDAAIEDAQVSLELYELEPDDE 75 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 LA+ + + L D + +L I AG GG++A + L RMY Sbjct: 76 MLAEAIKGLDNLKSDL--DLWELERLLSGQYDKEGVVLSINAGAGGTDAQDWAQMLLRMY 133 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A KV V S+ ++ G K I GR + ++ E G HR+ R+ A+G+ Sbjct: 134 TRWADDHGMKVTVDELSEGEEAGIKSATLEIDGRYAYGYLQNEKGTHRLVRISPFNANGK 193 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 TS A V ++P+ E+++DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P+G+ V Sbjct: 194 RQTSFAGVEIMPKLEEEVELDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLPSGLAV 253 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 + E+SQ QN+ +AM +L+A+L + +++ A++ + R I +IR Y F Sbjct: 254 RCTQERSQLQNKEKAMALLKAKLMIIAQEQRASQIADIR-GDIVEAAWGNQIRNYVFHPY 312 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + + D R +E V+ G +D I LL Sbjct: 313 QMVKDLRTGKESTDVEGVMNGDLDPFIQALL 343 >gi|330828582|ref|YP_004391534.1| peptide chain release factor 2 [Aeromonas veronii B565] gi|328803718|gb|AEB48917.1| Peptide chain release factor 2 [Aeromonas veronii B565] Length = 300 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 95/304 (31%), Positives = 157/304 (51%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I Q + + L ++ + + + +A +++ ++ + + Sbjct: 2 VGTIDTLTQGVDDVEMLVSLAVEGEDEETFNEA-----IAESEQLEAKLVDLEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C ++I++G+GG+EA + + RMY R+ +K E++ S+ D G K Sbjct: 57 QHDGSDCYIDIQSGSGGTEAQDWANMVLRMYLRWGDAHGYKPELIECSEGDVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 +G F ++ E+GVHR+ R ++ GR HTS +V V PE + D+RI Sbjct: 117 KFTGEYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFCSVFVYPEIDDDIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITH+PTG++V +++SQH+N+ + MK L+A+LY++E + Sbjct: 177 DVYRASGAGGQHVNRTESAVRITHVPTGVVVQCQNDRSQHKNKDQCMKQLKAKLYELEIQ 236 Query: 284 RMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ A K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 KQNAEKQALEETKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|254294252|ref|YP_003060275.1| hypothetical protein Hbal_1892 [Hirschia baltica ATCC 49814] gi|254042783|gb|ACT59578.1| hypothetical protein Hbal_1892 [Hirschia baltica ATCC 49814] Length = 370 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 167/340 (49%), Gaps = 14/340 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN--S 71 R E+ + + + + I++ + + E D + Sbjct: 30 KRLEELNALSEDPDFWNDAENAQKLMRERTKIVTAMDDITALETEISDAEEMAEMAEMEG 89 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D + + + A E L D C +EI AG GG+E+ + Sbjct: 90 DDSLLEDIVESMKAALIRAERAEL----SALLSGEVDGNDCFVEINAGAGGTESQDWANM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A KVE L S D ++ G K +SG + +K ESGVHR+ R+ Sbjct: 146 LRRMYVRWANAHGMKVEELDSHDGEEAGIKSATLKVSGENAYGWLKSESGVHRLVRISPF 205 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++ + HTS ++VAV P I+V+I +D+R DT RASGSGGQH+N TDSA+R+TH P Sbjct: 206 DSNAKRHTSFSSVAVSPVLDDTIEVEIEDKDVRTDTYRASGSGGQHINKTDSAIRLTHAP 265 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIR 307 TGI+V S++SQH+NR A +LRAR+Y+++ + A + +A+ K IG G +IR Sbjct: 266 TGIVVACQSDRSQHKNRASAWNMLRARIYELKMRERAEAAQANADAKTDIGWG---HQIR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y + I D R + + VL G +D + L+A Sbjct: 323 SYVLQPYQMIKDLRTGVETSDTKGVLDGDLDKFLAASLSA 362 >gi|218779410|ref|YP_002430728.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans AK-01] gi|218760794|gb|ACL03260.1| peptide chain release factor 2 [Desulfatibacillum alkenivorans AK-01] Length = 327 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 177/330 (53%), Gaps = 16/330 (4%) Query: 23 MSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ D+ K + +E +I+ ++ ++ E + L + + I + Sbjct: 1 MAQDGFWDSPDKNTAILKERTSITSLVEGWEKLAEELSEAEVLLELGVEEEDGQTIEEAR 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 +I + ++++ + DD ++ I+ I AG GG++A + L RMY R+ Sbjct: 61 -----QHLVKIEKGIDKLSLSRMLDGEDDARNAIVAINAGAGGTDAQDWAEMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + ++ D+ G K + T++G + +K E GVHR+ R+ ++G+ T Sbjct: 116 VEQKGFSYSIIDYQPGDEAGVKGVTFTVTGDYAYGYLKTEEGVHRLVRISPFNSNGKRQT 175 Query: 200 SAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+VAV PE + VD+ +D+RID RASG+GGQHVN T SAVRI HIPTGI+V Sbjct: 176 SFASVAVYPEIDQEIVVDVNEKDLRIDVFRASGAGGQHVNKTSSAVRILHIPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR 315 EKSQH+NR AMKVL+ARLY VE+++ + K +IG G+ +IR+Y + Sbjct: 236 QEKSQHRNRDLAMKVLKARLYQVEQEQQQKQMQDNYEAKEEIGFGN---QIRSYVLHPYQ 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + DHRIN+ + + VL G ID I +L Sbjct: 293 MVKDHRINMDVGNVNAVLDGDIDPFIEAVL 322 >gi|94987335|ref|YP_595268.1| protein chain release factor B [Lawsonia intracellularis PHE/MN1-00] gi|94731584|emb|CAJ54947.1| Protein chain release factor B [Lawsonia intracellularis PHE/MN1-00] Length = 362 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 129/344 (37%), Positives = 177/344 (51%), Gaps = 16/344 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 KNR +EIE +S + LT +E + + + E D ++ + Sbjct: 14 KNRLSEIEKILSAPDAWSNPEALTPILKEKSQLEADNLRFEKLHLCHTEMIDWFELVQEF 73 Query: 69 ---HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + S +E + L ++K +E YLLL + D ILEI G GG+EA Sbjct: 74 LTTNESSTEFLEALTALELQVKKFQDAMEEAEMYLLLGAEEDKM-DAILEIHPGAGGTEA 132 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A L + E + D+ G K + ISG + +K E G+HR+ Sbjct: 133 QDWAEMLERMYLRWADLHGFSKEEMDYLPGDEAGIKSVTLRISGENAYGLLKGERGIHRL 192 Query: 186 QRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++SGR HTS A+V V+P+A E+ +DI D+RID R+SG GGQ VNTT SAV Sbjct: 193 IRISPFDSSGRRHTSFASVDVIPDAGEEVVIDIKDSDLRIDVFRSSGPGGQSVNTTSSAV 252 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTGI+ +EKSQH N+ AM++LRARLY+ E K + A K I G Sbjct: 253 RITHIPTGIVAQCQNEKSQHHNKESAMRILRARLYEQEIKLRDAAKQAQYMGKEAISFG- 311 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IRTY R + DHR N +E VL G ID IN L Sbjct: 312 --SQIRTYTMQPYRLVKDHRTNCESSDVEAVLGGQIDKFINSYL 353 >gi|282891215|ref|ZP_06299718.1| hypothetical protein pah_c048o046 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498908|gb|EFB41224.1| hypothetical protein pah_c048o046 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 341 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 174/343 (50%), Gaps = 10/343 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + +E M D + A + + + Y K+ ++ ++ + Sbjct: 1 MASKEAKVKALETEMEAPTFWDDNDAAQKVIAECNALKAWTIPYHDLKERYSNVSELLQE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E + E++ I E+ + D K+ L I AG GG+EA + Sbjct: 61 AFDLGE--ESLIQELVEELDSIEASLKELEIRKMLAGELDSKNAFLSINAGAGGTEACDW 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V L RMY+R+AA + WKVEV+ + D D G K I +G + K E GVHR+ R+ Sbjct: 119 VLMLSRMYQRWAAKKNWKVEVIDTVDGDVAGIKSITYKFTGPFAYGYAKAEKGVHRLVRI 178 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V + PE +I ++I ED+R+DT RASG+GGQHVN TDSAVR+T Sbjct: 179 SPFDSNAKRHTSFASVDITPEITDDIQIEIRPEDLRVDTFRASGAGGQHVNRTDSAVRLT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSE 304 H+PTGI+V +++SQ QN+ K+LR++LY++E N A K +I G Sbjct: 239 HLPTGIVVSCQAQRSQLQNKETCYKMLRSKLYEMEVTARENALKAMGGEKKEIAWG---S 295 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + D R + ++ V+ G +DD +N L Sbjct: 296 QIRNYVFQPYTLVKDTRTKVECGNIQAVMDGELDDFVNAYLME 338 >gi|218248175|ref|YP_002373546.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801] gi|226739124|sp|B7K0A6|RF2_CYAP8 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|218168653|gb|ACK67390.1| hypothetical protein PCC8801_3422 [Cyanothece sp. PCC 8801] Length = 365 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 161/344 (46%), Gaps = 7/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L ++E ++ D + ++ + S + Y Q + +DL + Sbjct: 25 DLPALNANIQDLEQIAAQPDFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + E + + L D K +L I AG GG++A Sbjct: 85 LLELEEDATLNEEAEANLTQLNHEL--DRWELQRLLSGIYDSKGAVLTINAGAGGTDAQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KV + S+ D+ G K I GR + +K E G HR+ R Sbjct: 143 WAEMLLRMYTRWGEQQGYKVHLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A + V+P E ++ V+IP +D+ I T R+ G GGQ+VN ++AVR Sbjct: 203 ISPFNANGKRQTSFAGIEVMPALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H+PTGI V + E+SQ QN+ +A+ +L+A+L + +++ A + R + Sbjct: 263 VVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVE-AAWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y F + + D R N + V+ G +D I L ++ Sbjct: 322 QIRNYVFHPYQMVKDVRTNTETTDVNGVMDGKLDLFIESYLRSN 365 >gi|15610242|ref|NP_217621.1| peptide chain release factor 2 [Mycobacterium tuberculosis H37Rv] gi|31794284|ref|NP_856777.1| peptide chain release factor 2 [Mycobacterium bovis AF2122/97] gi|121638990|ref|YP_979214.1| peptide chain release factor 2 [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148662959|ref|YP_001284482.1| peptide chain release factor 2 [Mycobacterium tuberculosis H37Ra] gi|148824297|ref|YP_001289051.1| peptide chain release factor 2 [Mycobacterium tuberculosis F11] gi|167969713|ref|ZP_02551990.1| peptide chain release factor 2 [Mycobacterium tuberculosis H37Ra] gi|215405101|ref|ZP_03417282.1| peptide chain release factor 2 [Mycobacterium tuberculosis 02_1987] gi|215412969|ref|ZP_03421670.1| peptide chain release factor 2 [Mycobacterium tuberculosis 94_M4241A] gi|215428558|ref|ZP_03426477.1| peptide chain release factor 2 [Mycobacterium tuberculosis T92] gi|215432061|ref|ZP_03429980.1| peptide chain release factor 2 [Mycobacterium tuberculosis EAS054] gi|215447387|ref|ZP_03434139.1| peptide chain release factor 2 [Mycobacterium tuberculosis T85] gi|218754875|ref|ZP_03533671.1| peptide chain release factor 2 [Mycobacterium tuberculosis GM 1503] gi|224991482|ref|YP_002646171.1| peptide chain release factor 2 [Mycobacterium bovis BCG str. Tokyo 172] gi|253797794|ref|YP_003030795.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis KZN 1435] gi|254233729|ref|ZP_04927054.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis C] gi|254365733|ref|ZP_04981778.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis str. Haarlem] gi|254552185|ref|ZP_05142632.1| peptide chain release factor 2 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260188141|ref|ZP_05765615.1| peptide chain release factor 2 [Mycobacterium tuberculosis CPHL_A] gi|260202247|ref|ZP_05769738.1| peptide chain release factor 2 [Mycobacterium tuberculosis T46] gi|289444669|ref|ZP_06434413.1| peptide chain release factor 2 [Mycobacterium tuberculosis T46] gi|289448784|ref|ZP_06438528.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis CPHL_A] gi|289553103|ref|ZP_06442313.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis KZN 605] gi|289571312|ref|ZP_06451539.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T17] gi|289575817|ref|ZP_06456044.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis K85] gi|289746915|ref|ZP_06506293.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis 02_1987] gi|289751781|ref|ZP_06511159.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T92] gi|289755223|ref|ZP_06514601.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis EAS054] gi|289759231|ref|ZP_06518609.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T85] gi|289763284|ref|ZP_06522662.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis GM 1503] gi|294993388|ref|ZP_06799079.1| peptide chain release factor 2 [Mycobacterium tuberculosis 210] gi|297635740|ref|ZP_06953520.1| peptide chain release factor 2 [Mycobacterium tuberculosis KZN 4207] gi|297732739|ref|ZP_06961857.1| peptide chain release factor 2 [Mycobacterium tuberculosis KZN R506] gi|298526578|ref|ZP_07013987.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis 94_M4241A] gi|306777415|ref|ZP_07415752.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu001] gi|313660071|ref|ZP_07816951.1| peptide chain release factor 2 [Mycobacterium tuberculosis KZN V2475] gi|2076680|emb|CAB08395.1| PROBABLE PEPTIDE CHAIN RELEASE FACTOR 2 PRFB (RF-2) [Mycobacterium tuberculosis H37Rv] gi|31619879|emb|CAD96819.1| PROBABLE PEPTIDE CHAIN RELEASE FACTOR 2 PRFB (RF-2) [Mycobacterium bovis AF2122/97] gi|121494638|emb|CAL73119.1| Probable peptide chain release factor 2 prfB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124599258|gb|EAY58362.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis C] gi|134151246|gb|EBA43291.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis str. Haarlem] gi|148507111|gb|ABQ74920.1| peptide chain release factor 2 [Mycobacterium tuberculosis H37Ra] gi|148722824|gb|ABR07449.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis F11] gi|224774597|dbj|BAH27403.1| peptide chain release factor 2 [Mycobacterium bovis BCG str. Tokyo 172] gi|253319297|gb|ACT23900.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis KZN 1435] gi|289417588|gb|EFD14828.1| peptide chain release factor 2 [Mycobacterium tuberculosis T46] gi|289421742|gb|EFD18943.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis CPHL_A] gi|289437735|gb|EFD20228.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis KZN 605] gi|289540248|gb|EFD44826.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis K85] gi|289545066|gb|EFD48714.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T17] gi|289687443|gb|EFD54931.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis 02_1987] gi|289692368|gb|EFD59797.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T92] gi|289695810|gb|EFD63239.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis EAS054] gi|289710790|gb|EFD74806.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis GM 1503] gi|289714795|gb|EFD78807.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis T85] gi|298496372|gb|EFI31666.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis 94_M4241A] gi|308214303|gb|EFO73702.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu001] gi|326902672|gb|EGE49605.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis W-148] gi|328457573|gb|AEB02996.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis KZN 4207] Length = 378 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 162/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + +S ++ ++ ++ DL + Sbjct: 31 DVEGLRSRIEKLEHEASDPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYE 90 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI-RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + E + R L D++ ++ IR+G GG +AA Sbjct: 91 LAAEEAGAAAADAVAEADAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 150 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 151 DWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 210 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 211 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 270 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIP+GI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 271 LTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERKRLEERAELDAL-KADGGS-SWGN 328 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G +D + + + Sbjct: 329 QMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDLDGFLEAGIRWRNRR 375 >gi|293606108|ref|ZP_06688473.1| peptide chain release factor RF2 [Achromobacter piechaudii ATCC 43553] gi|292815563|gb|EFF74679.1| peptide chain release factor RF2 [Achromobacter piechaudii ATCC 43553] Length = 300 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 106/305 (34%), Positives = 169/305 (55%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ + +L + + D + + + A ++++ LE + + + Sbjct: 2 VETLTSLGTGLADANELFELAK-ADDDDSTLESIEKDADAFQEKLENLE----FRRMFSN 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C L+I+AG GG+EA + L R Y RYA + +KVEVL S+ D G K Sbjct: 57 PADPLNCFLDIQAGAGGTEAQDWASMLLRQYLRYAERKGFKVEVLEESEGDVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 + G F ++ E+GVHR+ R ++SG HTS A+V V PE +V++ D+R+ Sbjct: 117 KMEGEYAFGYLRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH+NR AM++L+++LY++E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRLTHIPTGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 E+ + K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 NRMAEQQKLEDSKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQ 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|294624919|ref|ZP_06703574.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666711|ref|ZP_06731947.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292600798|gb|EFF44880.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603536|gb|EFF46951.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 313 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 156/309 (50%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + + I+ + DL + + D + ++ + + +LE + Sbjct: 2 LEKTVIGIADVLSGLADAGDLLELA-ESEQDEDTAVAVIADLDNYQAHVEKLEFQRM--- 57 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 D + ++I+AG GG+EA + L RMY R+A R WK E++ S + G K Sbjct: 58 -FSGQMDSANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G + +K E GVHR+ R ++ R HTS +V V PE I++DI Sbjct: 117 SATVRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQNR AMK+L A+LY+ Sbjct: 177 DLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYE 236 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ A K IG G +IR Y Q RI D R + + VL G +D Sbjct: 237 LEVQKRNAEKDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + + L A Sbjct: 294 EFVEASLKA 302 >gi|239941657|ref|ZP_04693594.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL 15998] gi|239988119|ref|ZP_04708783.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL 11379] Length = 352 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 9 DLDALRADIAALEEQAAAPSLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFE 68 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + A+ E + E + L D + ++ IRA GG +AA Sbjct: 69 LAEAEGDADAQAEAETELESVKKALDE--MEVRTLLSGEYDAREALVTIRAEAGGVDAAD 126 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K EV ++ ++ G K + + + E G HR+ R Sbjct: 127 FAEKLQRMYLRWAEQHNYKTEVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVR 186 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 187 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 246 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G + Sbjct: 247 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMNALKGD--GGNSWGNQ 304 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + E V G ID + + + + Sbjct: 305 MRSYVLHPYQMVKDLRTEFEMGNPEAVFNGEIDGFVEAGIRWRKQR 350 >gi|170743911|ref|YP_001772566.1| peptide chain release factor 2 [Methylobacterium sp. 4-46] gi|168198185|gb|ACA20132.1| peptide chain release factor 2 [Methylobacterium sp. 4-46] Length = 321 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 161/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + ++ I +Q ++ L + ++ IR+ + + R Sbjct: 1 MRDRNDLEEAVASIRRLEQGLEDAATLIELGEMEGDEASIREGEEQIRAVQAEAAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A RK+KV+++ S+ Sbjct: 57 -RQIETLLAGEADGNDTYLEVHAGAGGTESQDWANMLQRMYARWAERRKYKVDIVEWSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS A+V V P I Sbjct: 116 EEAGIKGATLLIKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASVWVYPVVDDRIT 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +++ D RIDT R+SG+GGQHVNTTDSAVRITH+PTGI+V E+SQH+NR A +L Sbjct: 176 IEVKESDCRIDTYRSSGAGGQHVNTTDSAVRITHLPTGIVVACQQERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ + +A K IG G +IR+Y + + D R + Sbjct: 236 RARLYELELKKREEKANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGTQSTSPDD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G ID I L Sbjct: 293 VLDGDIDPFIEASLAQR 309 >gi|95929408|ref|ZP_01312151.1| peptide chain release factor 2 [Desulfuromonas acetoxidans DSM 684] gi|95134524|gb|EAT16180.1| peptide chain release factor 2 [Desulfuromonas acetoxidans DSM 684] Length = 312 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 174/316 (55%), Gaps = 13/316 (4%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 +E A+ ++ + Q ++ + L + + ++ ++ ++ E+ ++ Sbjct: 3 KERTALQKLVDGWTSAAQTVEDLEVLVELGAESEDEATRDEVREL-----LPELERQVDK 57 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 + + + D + IL I AG GG+EA + L RMY R+ ++ +K ++ D Sbjct: 58 MEFARMLSGEHDSSNAILSINAGAGGTEAQDWADMLLRMYLRFCDIKGFKTKITDYQPGD 117 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDV 215 D G K + T+ G + ++ E G+HR+ R+ +A+ + HTS +V V PE I+V Sbjct: 118 DAGVKSVTFTVEGDYAYGWLRPEMGIHRLVRISPFDAASKRHTSFCSVFVFPELDDSIEV 177 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 ++ +D++IDT RASG+GGQH+N TDSA+RITHIP+GI+V ++SQH N+ A++ L+ Sbjct: 178 ELLDKDMKIDTFRASGAGGQHINKTDSAIRITHIPSGIVVACQDQRSQHNNKAEAIRQLK 237 Query: 275 ARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 ARLY++ER++ E +A K +IG G +IR+Y R + DHR + + V Sbjct: 238 ARLYELERQKKEEEANALSGDKKEIGWG---SQIRSYVLHPYRMVKDHRTGFEVGNADSV 294 Query: 332 LQGYIDDIINPLLTAH 347 L G+I+ I L A+ Sbjct: 295 LDGHIEGFIEAYLLAN 310 >gi|323342407|ref|ZP_08082639.1| peptide chain release factor RF2 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463519|gb|EFY08713.1| peptide chain release factor RF2 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 347 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 172/350 (49%), Gaps = 12/350 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + H + + + E+E M E D + ++ + + ++ ++ Sbjct: 1 MIHFDLAQKEAKIKELESEMVEDGFWDDHRHSSQHIQKLNQLKKVVETHHDLLERLMSCS 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D ++ + + L ++ + L+L D K+ I+EI G Sbjct: 61 DSILLLKEEADEEFQNSLEVEVKEIQKEM-----ESFSVLVLLSHDYDQKNAIVEIHPGA 115 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ F L+RMY R+A +K+ VL+ D D+ G K + ++SG + +K E Sbjct: 116 GGTESQDFAEMLYRMYTRWAQDHGFKISVLNYLDGDEAGLKSVSFSVSGMFAYGYLKAEK 175 Query: 181 GVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHR+ R+ ++SGR HTS A+V V I++ I EDI +DTMRA+G+GGQHVN Sbjct: 176 GVHRLVRISPFDSSGRRHTSFASVDVAPEFDNSIEITILPEDIDVDTMRATGAGGQHVNK 235 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH TGI+V + +SQ QNR A+ +L+++LY E + + +A K + Sbjct: 236 TDSAVRITHKKTGIVVTCQAGRSQLQNREEALMMLKSKLYQREIEEKQAQLAAI-KGEHK 294 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +IR+Y + DHR + VL G IDD I L + Sbjct: 295 LIEWGSQIRSYVAHPYTMVKDHRTKFETSQYGDVLDGDIDDFIEAFLKMN 344 >gi|223558105|gb|ACM91108.1| peptide chain release factor 2 [uncultured bacterium Rlip2] Length = 330 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 101/330 (30%), Positives = 164/330 (49%), Gaps = 12/330 (3%) Query: 23 MSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M D L +E A + + + K + L + + + D+ Sbjct: 1 MGAPDFWDDAEAAQALNQELADLKGGVDTYNALVAKTDDLMTLWEMGMEEKDEGVEADVK 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++ + LL D + LE+ AG GG+EA + L RMY R+ Sbjct: 61 AEY-----DSLKNELRSLELELLLSGEYDANNAYLELHAGAGGTEAQDWTQMLLRMYGRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + VE L D+ G K ++ + G + +K E GVHR+ R+ +++ R HT Sbjct: 116 AERHGFSVETLDLQPGDEAGVKSVMLFVKGHNAYGYLKSEKGVHRLVRISPFDSNARRHT 175 Query: 200 SAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +V+I ++D+R+DT R+SG+GGQH+N T SAVR+TH+PTGI+V Sbjct: 176 SFSACDVMPEMEDAKEVEIDMDDVRVDTYRSSGAGGQHINKTSSAVRMTHMPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QNR +++LRA+L+++E K+ ER+ +Q + +IR+Y F + Sbjct: 236 NERSQIQNREVCLRMLRAKLFELEEKKKEEERAKLEGVQQK-IEWGSQIRSYVFQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR ++ V+ G ID I L A Sbjct: 295 KDHRTGEETGNVQAVMDGEIDPFIESFLAA 324 >gi|218885659|ref|YP_002434980.1| peptide chain release factor 2 [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|65736690|dbj|BAD98502.1| peptide release factor 2 [Desulfovibrio vulgaris] gi|218756613|gb|ACL07512.1| Peptide chain release factor 2 [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 376 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 11/340 (3%) Query: 13 KNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +NR EIE ++S + + KLT +E + + I+++ + +++ + T+ + Sbjct: 31 RNRLDEIERQLSSPDAWNNPEKLTPVLQEKSQLEGEITRLERLETCRRDVTEWLTLAEEE 90 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + E A + ++ L E +L +D I+EI G GG+EA + Sbjct: 91 EAAGEPGQEALESLAEQVTVLQNLLQETEMNMLLSGKEDRMPAIVEIHPGAGGTEAQDWA 150 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A K E L D+ G K + ++G + +K E G+HR+ R+ Sbjct: 151 EMLVRMYLRWADTHDMKAEYLDYLAGDEAGVKSVTLRMAGPNAYGLLKGEKGIHRLIRIS 210 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++SGR HTS A+V V+P+ EI VDI D+RID R+SG GGQ VNTT SAVRITH Sbjct: 211 PFDSSGRRHTSFASVDVIPDVGQEITVDIKETDLRIDIFRSSGPGGQSVNTTSSAVRITH 270 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 +PTGI +EKSQH NR AM++LRARLY++E +++ E+ A K IG G + Sbjct: 271 LPTGISAQCQNEKSQHSNRDTAMQILRARLYELELRKLEEEKKAQYAGKDAIGFG---SQ 327 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IRTY R + DHR N + +E VL G ID ++ L Sbjct: 328 IRTYTLQPYRLVKDHRTNTEIGDVEAVLDGRIDQLLRDYL 367 >gi|84515548|ref|ZP_01002910.1| peptide chain release factor 2 [Loktanella vestfoldensis SKA53] gi|84510831|gb|EAQ07286.1| peptide chain release factor 2 [Loktanella vestfoldensis SKA53] Length = 374 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 112/339 (33%), Positives = 170/339 (50%), Gaps = 5/339 (1%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E + R+ + D + ++ ++++D KQE D +I + + Sbjct: 31 RLEEFDARVEDPTLWDDPDAAQKLMRDRQVLVDTLTMHDTIKQELADNIELIEMGEMEGD 90 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 E K +RE + L D LE+ AG GG+E+ + L R Sbjct: 91 --ADIITEAEEALKSLREKAAQKELEALLDGEADANDTFLEVNAGAGGTESCDWANMLSR 148 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + +KVE+ S D+ G K + I G + +K ESGVHR+ R+ +++ Sbjct: 149 MYVRWAEKKGYKVELQSMQSGDEAGIKSVTYKIMGHNAYGWLKSESGVHRLVRISPFDSA 208 Query: 195 GRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS +V V P I++++ DIR+DT R+SG+GGQHVNTTDSAVRITH PTGI Sbjct: 209 AKRHTSFTSVKVYPVVDDNIEIEVNPSDIRLDTYRSSGAGGQHVNTTDSAVRITHFPTGI 268 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +VTSSEKSQHQNR AMK L++RLY +E + + + + G +IR+Y Sbjct: 269 VVTSSEKSQHQNRDIAMKALKSRLYQMELDKRSALVNEAHENA-GDAGWGNQIRSYVLQP 327 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + + D R + VL G +D ++ L + Sbjct: 328 YQMVKDLRTGFETSDTKGVLDGDLDGLMGATLALDMSGK 366 >gi|308233416|ref|ZP_07664153.1| peptide chain release factor 1 [Atopobium vaginae DSM 15829] Length = 300 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 152/303 (50%), Positives = 206/303 (67%), Gaps = 7/303 (2%) Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + + ++ D ++D R++ Q ++ A E+++ LE+EI +L+P D +D+K I+E Sbjct: 1 LDDIEAAKEMLHDADADE--REMLQEDIAANEEKLPALEDEIKIMLIPGDPNDEKDTIVE 58 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 IRAG GG EAA+F GDL++MYER+A + WKVE+LSSS ++ GG+K I + G V+S Sbjct: 59 IRAGVGGDEAAIFAGDLYKMYERFAESKNWKVEILSSSPSEVGGFKTIEFKMLGEKVYSV 118 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 MK+ESGVHRVQRVP TE+ GR+ TS ATVAVLPEA EID+ I D+RIDT ASG GGQ Sbjct: 119 MKYESGVHRVQRVPKTESQGRIQTSTATVAVLPEADEIDIQIDPTDLRIDTYCASGPGGQ 178 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTT SAVRITH+PT +V + ++SQ QNR M++LRARLY++E ++ E+ A R Sbjct: 179 CVNTTYSAVRITHLPTNTVVQSQDQRSQIQNREVCMQMLRARLYEMELEKQQEEQGAARL 238 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 QIG G+RSE+IRTYN Q R+TDHRI Y VL G + II L A +A+ + Sbjct: 239 SQIGHGNRSEKIRTYNQPQDRVTDHRIGFNATYN--GVLLGDTLISIIEALAAAERAEKL 296 Query: 353 GSA 355 A Sbjct: 297 AKA 299 >gi|94495879|ref|ZP_01302458.1| protein chain release factor B [Sphingomonas sp. SKA58] gi|94424571|gb|EAT09593.1| protein chain release factor B [Sphingomonas sp. SKA58] Length = 377 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 170/341 (49%), Gaps = 16/341 (4%) Query: 14 NRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D ++ E + I + +K + +L + Sbjct: 32 RRLDELNARVEDPTLWDNAKQAQEVMRERTRLDSAIGATRAIEAEKSDTAELIEMAEAEG 91 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + ++ L D LEI AG GG+E+ + Sbjct: 92 DEGMVDEAVAALKALADRADE-----DKIKALLAGEADSYDTYLEIHAGAGGTESQDWAE 146 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +KVE++ D G K + G + K ESGVHR+ R+ Sbjct: 147 MLSRMYRRWAERRGYKVELVDYQAGDQAGIKSATFLMKGENAYGYAKTESGVHRLVRISP 206 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P +ID+++ D++IDT RASG+GGQHVNTTDSAVRITH+ Sbjct: 207 YDSSARRHTSFSSVWVYPVIDDDIDIEVKESDLKIDTYRASGAGGQHVNTTDSAVRITHV 266 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 P+GI+V + +++SQH+NR AM +L+ARLY+ E +R S++ K +IG G +I Sbjct: 267 PSGIIVASQNDRSQHKNRATAMNMLKARLYEAELRRREEAASSDYQAKTEIGWG---HQI 323 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + + D R +T + VL G +D + L+ Sbjct: 324 RSYVLQPYQLVKDLRTGVTSTSPDDVLDGALDPFMAAALSQ 364 >gi|229586524|ref|YP_002845025.1| peptide chain release factor 2 [Rickettsia africae ESF-5] gi|259585246|sp|C3PMX2|RF2_RICAE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|228021574|gb|ACP53282.1| Peptide chain release factor RF-2 [Rickettsia africae ESF-5] Length = 368 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 175/339 (51%), Gaps = 10/339 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R +E ++ + + S + K++ +++ K +D + +++ Sbjct: 30 ERLNALEELTADPSLWNDQANAQKLLREKSNLEEKLNAFNKLKSNLKDALELEEMAEAEN 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 ++ L+Q + K + + + L D +C LEI AG GG+E+ + + Sbjct: 90 DLETLSQ--IEQDLKNLSIIAAKFETECLFSGEADGNNCFLEINAGAGGTESHDWASIMM 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ R+ A Sbjct: 148 RMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTETGVHRLVRISPFNA 207 Query: 194 SGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPTG Sbjct: 208 AGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPTG 267 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G +IR+Y Sbjct: 268 TVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNATKTDNSWG---HQIRSY 324 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R + + VL G +++ ++ L + Sbjct: 325 VLQPYHMVKDLRTDYETSDTKGVLDGDLEEFVSANLAMN 363 >gi|217034219|ref|ZP_03439638.1| hypothetical protein HP9810_886g56 [Helicobacter pylori 98-10] gi|216943387|gb|EEC22846.1| hypothetical protein HP9810_886g56 [Helicobacter pylori 98-10] Length = 381 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 45 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 104 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 105 QNDND-----EVTLSLLYEEAPILEHSVQKVEIKIMLSGENDASNAIITIQPGAGGTESQ 159 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 160 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 219 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 220 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 279 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 280 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 336 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 337 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 379 >gi|190571741|ref|YP_001976099.1| protein chain release factor b [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190358013|emb|CAQ55482.1| protein chain release factor b [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 335 Score = 207 bits (527), Expect = 2e-51, Method: Composition-based stats. Identities = 107/336 (31%), Positives = 170/336 (50%), Gaps = 11/336 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E++ + S K E S I +I + + + + D +++ +++ Sbjct: 2 RLEELDSQASNDNLWQDNQKAQEILKERSKIKHEIESFSKLESDYNDSISLMRSAIDEND 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + EV ++ +L L D+ +C LEI +G GG+E+ + L R Sbjct: 62 --EEFFSEVKGELVKLEKLIKLKETESLFTGEADNNNCFLEIHSGAGGTESNDWTEMLMR 119 Query: 135 MYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY R+A +KVEV+ D D G K I G + K ESGVHR+ R+ +A Sbjct: 120 MYTRWAEIYHNFKVEVVEKLDGDAVGIKSTTIKIIGEKAYGWAKSESGVHRLVRISPFDA 179 Query: 194 SGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ HTS A+V V P + + +D++IDT RASG+GGQHVN T+SAVRITHIPTG Sbjct: 180 NGKRHTSFASVGVTPVIEDSIDIVVDEKDLKIDTYRASGAGGQHVNKTESAVRITHIPTG 239 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTY 309 ++ + +SQH+N+ A+K+L+ RLY +E ++ + + +K IG G +IR+Y Sbjct: 240 VVAQCQNGRSQHKNKDEALKLLKGRLYQIELEKKEQKMAEEYGKKCDIGWG---SQIRSY 296 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + + D R + + V G ID I +L Sbjct: 297 VMHPYQMVKDLRTGHEVGNINSVFDGNIDCFIVSVL 332 >gi|309810763|ref|ZP_07704570.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185] gi|308435300|gb|EFP59125.1| peptide chain release factor 2 [Dermacoccus sp. Ellin185] Length = 370 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 171/347 (49%), Gaps = 11/347 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK + ++E + + D + +A+S ++ + DL ++ Sbjct: 24 DLEKLKKQIVDLEEQSAAPDLWDDPDAAQKITSALSRANAENDRVENMDAAIDDLEVLVE 83 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D++ A+ E+ ++K + ELE L D++ ++ IRAG GG +A Sbjct: 84 MGTEENDADTLAEAERELKKLQKAVGELEV----RTLLNGEFDEREAVVTIRAGAGGVDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V+ +S ++ G K + ++ F + E+G HR+ Sbjct: 140 ADFAEMLMRMYLRWAERHGYPTKVMDTSYAEEAGLKSVTFEVNVPYAFGNLSVEAGTHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++IP +++ID R+SG GGQ VNTTDSAV Sbjct: 200 VRISPFDNQGRRQTSFAAVEVVPLIETTDTIEIPENELKIDVFRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG +V+ +EKSQ QNR A++V+++RL ++++ ++ S Sbjct: 260 RMTHIPTGTVVSMQNEKSQIQNRAAALRVMQSRLLLLKKQEEDAQKKELAGDIKAS--WG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +++R+Y + + D R + V G ID I + +A Sbjct: 318 DQMRSYVLHPYQMVKDLRTEYEVGNTSGVFDGDIDGFIEAGIRWKRA 364 >gi|291445100|ref|ZP_06584490.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL 15998] gi|291348047|gb|EFE74951.1| peptide chain release factor 2 [Streptomyces roseosporus NRRL 15998] Length = 368 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 93/346 (26%), Positives = 159/346 (45%), Gaps = 7/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDALRADIAALEEQAAAPSLWDDPDAAQKITSKLSHLQAEVRKAEALRGRIDDLEVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + A+ E + E + L D + ++ IRA GG +AA Sbjct: 85 LAEAEGDADAQAEAETELESVKKALDE--MEVRTLLSGEYDAREALVTIRAEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K EV ++ ++ G K + + + E G HR+ R Sbjct: 143 FAEKLQRMYLRWAEQHNYKTEVYETAYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMNALKGD--GGNSWGNQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +R+Y + + D R + E V G ID + + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEFEMGNPEAVFNGEIDGFVEAGIRWRKQR 366 >gi|188582408|ref|YP_001925853.1| peptide chain release factor 2 [Methylobacterium populi BJ001] gi|179345906|gb|ACB81318.1| peptide chain release factor 2 [Methylobacterium populi BJ001] Length = 321 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ I +Q ++ L + + I + K + + Sbjct: 1 MRERQELDEAVTAIKKLEQDLEDAATLIELGEMEGDQASITEGENAI-----KAVEKEAA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A RK+KVE++ +D Sbjct: 56 SRQVETLLSGEADGFDTYLEVHAGAGGTESQDWANMLQRMYARWAERRKFKVEIVEMTDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS A+V V P I+ Sbjct: 116 EEAGIKGATLLIKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASVWVYPVIDDRIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D RIDT R+SG+GGQHVNTTDSAVRITH PTGI+V E+SQH+NR A +L Sbjct: 176 IEIKESDCRIDTYRSSGAGGQHVNTTDSAVRITHNPTGIVVACQQERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ + +A K IG G +IR+Y + + D R + Sbjct: 236 RARLYEAELKKREEKANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGTQSTDPDE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDPFMEASLAQR 309 >gi|332185456|ref|ZP_08387204.1| peptide chain release factor 2 [Sphingomonas sp. S17] gi|332014434|gb|EGI56491.1| peptide chain release factor 2 [Sphingomonas sp. S17] Length = 375 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 103/342 (30%), Positives = 159/342 (46%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + + + E + I+ + + +L + Sbjct: 30 RRLDELNARVEDQALWNDPKQAQAVMRERRRLDEAITATRAIENELSGTVELIELAEMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + ++ ++ L D +EI AG GG+E+ + G Sbjct: 90 DEELEKEAVTSLGDLAKRAEA-----DKVKALLAGEADANDSYIEINAGAGGTESQDWAG 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R KVE++ + G K + G + K ESGVHR+ R+ Sbjct: 145 MLQRMYTRWAERRGMKVELIDYHAGEQAGIKSATLLVKGENAYGYAKVESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS ++V V P I+V+I ++RIDT RASG+GGQH+NTTDSAVRITH+ Sbjct: 205 YDSAARRHTSFSSVWVYPVIDDNIEVEINESELRIDTYRASGAGGQHINTTDSAVRITHL 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERI 306 PTGI+V +++SQH+N+ A LRARLY+ E +A K IG G +I Sbjct: 265 PTGIVVQCQNQRSQHKNKAEAYNQLRARLYERELAEREAVANAENATKTDIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R +T VL G +D + L+ Sbjct: 322 RSYVLQPYQLVKDLRTGVTSTAPGDVLDGDLDAFMAAALSQR 363 >gi|317051343|ref|YP_004112459.1| peptide chain release factor 2 [Desulfurispirillum indicum S5] gi|316946427|gb|ADU65903.1| Peptide chain release factor 2 [Desulfurispirillum indicum S5] Length = 367 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 108/348 (31%), Positives = 175/348 (50%), Gaps = 18/348 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 + + R AE+ + + + + E + ++ + + ++ + LH Sbjct: 24 DVPAKEERLAELVPMIEDPTLWNDPQQAQGILREDKMLKDALADFNEIHRLLEDVKVLHE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + S+ + ++ +L + +L D D + L I AG GG+E Sbjct: 84 FCQEDESNVDEL-------TQNLAKLEKLVADYELTVLLSDEHDPSNAYLTINAGAGGTE 136 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A RK+KV ++ + ++ G K + I G + +K E+GVHR Sbjct: 137 SQDWGSMLMRMYTRWAEKRKFKVTIMEYQEGEEAGIKSVTLFIEGLYAYGNLKSETGVHR 196 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS +V V PE + +VDI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 197 LVRISPFDSNARRHTSFTSVFVSPEIDDSIEVDIRESDLRIDTYRSSGAGGQHVNTTDSA 256 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSG 300 VRITH PTG++ SE+SQHQN+ +AMK+LRA+LY++E ++ + K+ I G Sbjct: 257 VRITHTPTGVVTQCQSERSQHQNKEQAMKMLRAKLYELELEKKRQGLREVEDSKMDIAWG 316 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + D R E VL G +D+ I L Sbjct: 317 ---SQIRSYVLHPYKMVKDLRTRHETGNAEAVLDGALDEFIKAYLQWQ 361 >gi|239636633|ref|ZP_04677635.1| peptide chain release factor 2 [Staphylococcus warneri L37603] gi|239597988|gb|EEQ80483.1| peptide chain release factor 2 [Staphylococcus warneri L37603] Length = 330 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 104/335 (31%), Positives = 169/335 (50%), Gaps = 17/335 (5%) Query: 22 RMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 M+E D + + A+ +++ ++ ++ ++ + + ++L Sbjct: 1 MMTEPNFWDDQNRAQDIIDKNNALKSMVNGYYELEESVEDMSATVELLQEEFDEDMKQEL 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 V + + LL D + ILE+ G GG+E+ +V L RMY+R Sbjct: 61 ENNVVEFKAEI-----DHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR H Sbjct: 116 YCEQSGFKVETVDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRH 175 Query: 199 TSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V Sbjct: 176 TSFASCDVIPDFDNDEIEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVN 235 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQ 313 +E+SQ +NR AMK+L+++LY ++ + E + R Q IG G +IR+Y F Sbjct: 236 NQNERSQIKNREAAMKMLKSKLYQLKLEEQEREMAEIRGEQKEIGWG---SQIRSYVFHP 292 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N K++ V+ G I I L Sbjct: 293 YSMVKDHRTNEETGKVDAVMDGDIGPFIEAYLRHQ 327 >gi|45656368|ref|YP_000454.1| peptide chain release factor 2 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|59798054|sp|Q72V33|RF2_LEPIC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|45599602|gb|AAS69091.1| peptide chain release factor 2 [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 367 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 169/345 (48%), Gaps = 16/345 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + K+R + + + + + +++ + ++ Q + DL + Sbjct: 29 LEQDKDRLKSLTEKAEDPNLWNNPEEARLVSQKKNELEKKLNPWFTIQQDILDFPDLVDL 88 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D ++ + +L+ EK + L K+ +D K L I G GG+E+ Sbjct: 89 TLDEKGENGVGELSSEYNRLQEKFEE-----LELLGALKNPEDLKPAFLNIHPGAGGTES 143 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY RY + ++ ++ D G K + G F +K E+GVHR+ Sbjct: 144 QDWAEMLLRMYTRYFEKKGYQYSLIDVQAGDGAGIKNATLHVIGDFAFGFLKGENGVHRL 203 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS +V V P +ID+ I +DIR+D R+SG+GGQHVNTTDSAV Sbjct: 204 VRISPFDANKRRHTSFVSVHVSPEIDDDIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAV 263 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD--VERKRMANERSANRKLQIGSGD 301 RITH+P+GI+V +E+SQ +NR A K+L+ARLY+ E+ + E+ + K I G Sbjct: 264 RITHMPSGIVVACQNERSQIKNRDTAFKMLKARLYELEQEKAKEELEKKSGEKKDITWG- 322 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + + V+ G I+ I L Sbjct: 323 --SQIRSYVFHPYNLVKDHRTDHETGNVAAVMDGDIEPFILAYLK 365 >gi|326914097|ref|XP_003203364.1| PREDICTED: peptide chain release factor 1, mitochondrial-like [Meleagris gallopavo] Length = 455 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 128/363 (35%), Positives = 199/363 (54%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + ++ + ++S + L A +SP+ + + + E ++L T Sbjct: 83 QKYLETLSKEYQQVNSLLNADSKNEFEQRTLRRRSADLSPVATAFQEIKEAEGELRELET 142 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRE--LENEINYLLLPKDTDDDKSCILEIRAG--T 120 + + S E + L + L ++ LL+PK+ D ILE+ AG T Sbjct: 143 MCRELGSREEKQLLELALEEKETLNKKINTLCRKLFQLLVPKEKYDKSHVILEVTAGRTT 202 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ YA + W ++L+ + GG A ISG V+ +K+E Sbjct: 203 GGDICQQFTKEMFEMYQNYADYKCWTFDILNYVPAEIGGLHHAAAHISGDDVYRHLKYEG 262 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G HRVQR+P T S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 263 GTHRVQRIPETGLSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGGQHV 322 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRI H+PTG++V E+SQ N+ A++ LRA+LY ++ ++ + RKLQ Sbjct: 323 NKTDSAVRIVHLPTGVVVECQQERSQQMNKEIALRTLRAKLYQQIIEKQLSQEQSARKLQ 382 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI+ ++ +L G +D +IN LL + + + Sbjct: 383 LGTRAQSERIRTYNFTQDRVTDHRISYDARNIKEILSGKEELDKLINRLLEFAEMEALTE 442 Query: 355 ASE 357 E Sbjct: 443 YLE 445 >gi|15896100|ref|NP_349449.1| peptide chain release factor 2 [Clostridium acetobutylicum ATCC 824] gi|15025890|gb|AAK80789.1|AE007782_3 Protein chain release factor B [Clostridium acetobutylicum ATCC 824] gi|325510254|gb|ADZ21890.1| peptide chain release factor 2 [Clostridium acetobutylicum EA 2018] Length = 329 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 167/332 (50%), Gaps = 6/332 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + + E I + +I ++ + +D + +I D + +I Sbjct: 1 MQEPDFWNDVKRAQEISMEIKFLKGRIDRFNSIESRIEDDNVLIEMCREDENEEEADEIL 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + ++ D + IL + G GG++A + L RMY R+A Sbjct: 61 KEVRDLHEEV--DNFKIEIILSGEYDRNNAILNLHTGVGGTDAQDWTQMLLRMYTRWAEA 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KV+++ D+ G K + I G + +K E G+HR+ R+ A+G+ TS A Sbjct: 119 KGFKVDIIDMLPGDEAGIKSVSINIDGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFA 178 Query: 203 TVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V VLP+ + I ED+++DT RASG+GGQHVN T+SAVRITH+PTGI+V SE+ Sbjct: 179 SVEVLPQLTQSQDIVIRPEDLKVDTYRASGAGGQHVNKTESAVRITHLPTGIVVQCQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ AM +L+++L +++ +RM E+ + ++ +IR+Y F + DH Sbjct: 239 SQHSNKETAMNMLKSKLVELK-ERMHKEKVEDLAGELKDMGWGNQIRSYVFQPYTMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R + ++ V+ G ID I L ++ Sbjct: 298 RTGVETSNVDAVMDGEIDKFIIEYLNKENSQK 329 >gi|317179974|dbj|BAJ57760.1| peptide chain release factor 2 [Helicobacter pylori F32] Length = 381 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 45 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 104 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 105 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 159 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 160 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 219 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 220 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 279 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 280 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 336 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 337 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 379 >gi|157803496|ref|YP_001492045.1| peptide chain release factor 2 [Rickettsia canadensis str. McKiel] gi|157784759|gb|ABV73260.1| peptide chain release factor 2 [Rickettsia canadensis str. McKiel] Length = 350 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 99/353 (28%), Positives = 170/353 (48%), Gaps = 16/353 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 I R E+ + + L E + + ++ ++ ++ Sbjct: 1 MRGLFDIKTATKRLKELAELTTNPDLWNDQVNAQTLLREKSTLEEKLNTLNKLKSNLKDT 60 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +L + N + + Q K + + + L D +C LEI AG Sbjct: 61 LELEALAETENDLETLAQVKQD-----LKNLSIIAAKFETEYLFSGEADCNNCFLEINAG 115 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+E+ + + RMY R+A +K E+++ + ++ G K I G+ + K E Sbjct: 116 AGGTESHDWASIMMRMYLRFAERLDFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTE 175 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVN 238 +GVHR+ R+ A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVN Sbjct: 176 AGVHRLVRISPFNAAGKRMTSFASSWVYPEIDDNISITIDDKDLRIDTFRASGAGGQHVN 235 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 TTDSAVRITHIPTG + S++SQH+N+ +AM++L+A+LY++E ++ + + K Sbjct: 236 TTDSAVRITHIPTGTVTQCQSDRSQHKNKAQAMRMLKAKLYELEMQKRTDNINEQNAAKT 295 Query: 296 QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 G +IR+Y + + D R + VL G +++ ++ L + Sbjct: 296 DNSWG---HQIRSYILQPYQMVKDLRTDYETSDTRGVLDGNLEEFVSASLAMN 345 >gi|291453772|ref|ZP_06593162.1| peptide chain release factor 2 [Streptomyces albus J1074] gi|291356721|gb|EFE83623.1| peptide chain release factor 2 [Streptomyces albus J1074] Length = 371 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDRLRAEIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTEALRSRLDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D++ R A+ E+ ++ K + E+E L D + ++ IRA GG +A Sbjct: 85 LAEAEDDADTRAEAESELASVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K EV +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQRGYKTEVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEEEMGNPEAVFNGEIDGFLEAGIRWRKQR 366 >gi|296283820|ref|ZP_06861818.1| peptide chain release factor 2 [Citromicrobium bathyomarinum JL354] Length = 375 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 159/342 (46%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 E+ R+ + D + E + I ++ + + + + Sbjct: 30 RELDELNARVEDPTLWDDPKQAQAIMREQKRLESAIGTVNTISSEMADAIEFVEMGEAEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + + L D LE+ AG GG+E+ + Sbjct: 90 DDDIVNEGLTSLEKLAARADA-----DKVQALLSGEADANDAYLEVHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +KVE + + G K + I G + K ESGVHR+ R+ Sbjct: 145 MLMRMYVRWAEKRGFKVETVEYQSGEQAGIKSVTLHIKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P +I+++I D++IDT RASG+GGQHVNTTDSAVRITH Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDDIEIEINESDLKIDTYRASGAGGQHVNTTDSAVRITHQ 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +L+ARL++ E S K +IG G +I Sbjct: 265 PTGIVVASQNDRSQHKNRATAMSMLKARLFEREMAEREAAASGEYAEKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R T VL G ID I+ L Sbjct: 322 RSYVLQPYQLVKDLRTGETSTAPGDVLDGAIDPFISAALAQR 363 >gi|323135929|ref|ZP_08071012.1| peptide chain release factor 2 [Methylocystis sp. ATCC 49242] gi|322399020|gb|EFY01539.1| peptide chain release factor 2 [Methylocystis sp. ATCC 49242] Length = 322 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 161/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + + I + ++ L + + + ++ + ++ Sbjct: 1 MRERTQLEEQMGAIDKLSRDLEDALTLVELGEEAGDEDTEKEGVEALKAVLKDA-----Q 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D +EI +G GG+E+ + LFRMY R+A +K+KVEV+ + Sbjct: 56 RRQIEALFSGEADGNDTFIEIHSGAGGTESQDWARMLFRMYARWAERKKFKVEVIEETAG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G K ESGVHR+ R+ +++ R HTS A+V V P I+ Sbjct: 116 EEAGIKSGTLLVKGHNAHGWAKTESGVHRLVRISPFDSNARRHTSFASVWVYPVVDDRIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V+I D RIDT R+SG+GGQHVNTTDSA+RITHIPTGI+V +E+SQH+NR A +L Sbjct: 176 VNINESDCRIDTYRSSGAGGQHVNTTDSAIRITHIPTGIVVACQAERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E ++ E ++A K IG G +IR+Y + + D R +T Sbjct: 236 RARLYELELEKREAEANKAAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVTSGTPSE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L Sbjct: 293 VLDGELDDFMQASLAQR 309 >gi|126729874|ref|ZP_01745687.1| peptide chain release factor 2 [Sagittula stellata E-37] gi|126709993|gb|EBA09046.1| peptide chain release factor 2 [Sagittula stellata E-37] Length = 374 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 114/348 (32%), Positives = 164/348 (47%), Gaps = 8/348 (2%) Query: 2 VFLSHKQI--CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + L +++ ++R E R+ + D + ++ + Y KQE Sbjct: 16 LDLLKQRLGWETAQHRLEEFNARVEDPNLWDNPEAAQKLMRDRQSLVDALESYTSLKQEL 75 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +D +I + + +A E + L D LEI+AG Sbjct: 76 EDQVELIELGEMEEDAEVVADAEAALKALVET--SAKKELEALLDGETDGNDAFLEIKAG 133 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+EA + L RMY R+A R ++V++ + G K I G+ + +K E Sbjct: 134 AGGTEACDWANMLARMYVRWAEKRGFEVDLQEEQAGAEAGIKSATYQIKGKNAYGWLKSE 193 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 SG HR+ R+ G TS A V P I+V + DIRIDT R+SG+GGQHVN Sbjct: 194 SGTHRLVRISPFGK-GTRETSFAAVGAYPVIDDNIEVTVNPADIRIDTFRSSGAGGQHVN 252 Query: 239 TTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TTDSAVRITH PTGI+VTSSEKSQHQNR AMK L++RLY +E R E +A + + G Sbjct: 253 TTDSAVRITHHPTGIVVTSSEKSQHQNRDIAMKALKSRLYQLELDRRNAEVNALHEAK-G 311 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + + D R + VL G +D + L Sbjct: 312 DAGWGNQIRSYVLQPYQMVKDLRTQYETADTQGVLDGDLDPFMEATLA 359 >gi|21221417|ref|NP_627196.1| peptide chain release factor 2 [Streptomyces coelicolor A3(2)] gi|256787399|ref|ZP_05525830.1| peptide chain release factor 2 [Streptomyces lividans TK24] gi|289771299|ref|ZP_06530677.1| peptide chain release factor 2 [Streptomyces lividans TK24] gi|19864260|sp|Q53915|RF2_STRCO RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|6912002|emb|CAB72218.1| chain release factor 2 [Streptomyces coelicolor A3(2)] gi|289701498|gb|EFD68927.1| peptide chain release factor 2 [Streptomyces lividans TK24] Length = 368 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 165/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDRLRADIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A+ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELAAVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K EV +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQHGYKTEVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHIPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQR 366 >gi|302334951|ref|YP_003800158.1| bacterial peptide chain release factor 2 (bRF-2) [Olsenella uli DSM 7084] gi|301318791|gb|ADK67278.1| bacterial peptide chain release factor 2 (bRF-2) [Olsenella uli DSM 7084] Length = 370 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 112/369 (30%), Positives = 166/369 (44%), Gaps = 31/369 (8%) Query: 2 VFLSHKQICDLKNRFA----------------EIELRMSESPSVDAYIKLTEEYAAISPI 45 + +S I L R E+E R + D + ++ Sbjct: 1 MDVSKADIEALARRLDEVESYLHIDERRRVVAELEERSARPGFWDDADAASRSMTELTRA 60 Query: 46 ISKISIYDQKKQEEQDLHTVIG--DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + + + D + D ++ D A A+E E+ E+ Sbjct: 61 KEDVQGIEDARTRLGDASAALELGLETGDGDLLDEAARICGALEDEL----GELELSSWF 116 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 D D I+ + G GG EA + LF+MY RY R WKV V + + G Sbjct: 117 ADDLDHGDAIVTVTPGQGGLEAQDWCDMLFKMYLRYCDRRGWKVTVNDAPAAEAIGIDRA 176 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDI 222 T+SG+ + ++ E GVHR+ R+ T+ R T+ A V VLP +++VDI D+ Sbjct: 177 TFTVSGKNAYGMLRAEQGVHRLVRISPTDDKKRRQTTFAGVEVLPVLPDDVEVDIDPGDL 236 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 RID ASG GGQ VNTTDSAVRITH+PTG +V +E+SQ QN+ AM +LR+RLY++E Sbjct: 237 RIDVYHASGHGGQGVNTTDSAVRITHLPTGTVVTCQNERSQIQNKAIAMGILRSRLYELE 296 Query: 282 RKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVL-QGYID 337 + E R K +IG G+ +IR+Y + + D R + +E VL G +D Sbjct: 297 LAKREAEIDELRGPKHEIGFGN---QIRSYVLYPYQLVKDLRTGVETGNVESVLDDGDLD 353 Query: 338 DIINPLLTA 346 I Sbjct: 354 KFIVGYHRW 362 >gi|239981919|ref|ZP_04704443.1| peptide chain release factor 2 [Streptomyces albus J1074] Length = 355 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 167/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 9 DLDRLRAEIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTEALRSRLDDLGVLFE 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D++ R A+ E+ ++ K + E+E L D + ++ IRA GG +A Sbjct: 69 LAEAEDDADTRAEAESELASVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K EV +S ++ G K + + + E G HR+ Sbjct: 125 ADFAEKLQRMYLRWAEQRGYKTEVYETSYAEEAGIKSTTFAVQAPYAYGTLSVEQGTHRL 184 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 185 VRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 244 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 245 RLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 302 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 303 NQMRSYVLHPYQMVKDLRTEEEMGNPEAVFNGEIDGFLEAGIRWRKQR 350 >gi|254422250|ref|ZP_05035968.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335] gi|196189739|gb|EDX84703.1| peptide chain release factor 2 [Synechococcus sp. PCC 7335] Length = 345 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 83/345 (24%), Positives = 164/345 (47%), Gaps = 6/345 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + + ++E ++ D + ++ + + + +D ++ Sbjct: 1 MNAKIKDLEQLSAQPDFWDEQESAQKSLQELNDYKANLDQVEGWSTSLEDSEAILELL-- 58 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D E + +E + + + ++ L D +L I AG GG++A + Sbjct: 59 DLEQDESLLLEAESTVNRLSKELDQWELQQLLSGPYDKAGAVLTINAGAGGTDAQDWSEM 118 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R++ ++ +++ S+ D+ G K + + GR + +K E G HR+ R+ Sbjct: 119 LLRMYTRWSEQNGYQFKLIEKSEGDEAGLKSVTMEVYGRYAYGYLKGEKGTHRLVRISPF 178 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P ++++DIP +D+ I T R+ G+GGQ+VN ++AVRITH+P Sbjct: 179 NANGKRQTSFAGVEVMPILDQKVELDIPDKDLEIKTSRSGGAGGQNVNKVETAVRITHLP 238 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 T I V + E+SQ QN+ +AM +L ++L + +++ + R + +IR Y Sbjct: 239 TSISVRCTQERSQLQNKEKAMALLTSKLLVIAQEQRTQAIADIRGDMVE-AAWGNQIRNY 297 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 F + + D R ++ ++ V+ G ++ I L ++ Sbjct: 298 VFHPYQMVKDLRTSVETTAVDDVMNGDLEAFIQAYLHQENQLILE 342 >gi|78044242|ref|YP_359035.1| peptide chain release factor 2 [Carboxydothermus hydrogenoformans Z-2901] gi|77996357|gb|ABB15256.1| peptide chain release factor 2 [Carboxydothermus hydrogenoformans Z-2901] Length = 371 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 110/350 (31%), Positives = 180/350 (51%), Gaps = 11/350 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I K ++ + E D Y + + ++ + I Y++ + ++ Sbjct: 19 MRVSLDIPGKKELVEKLTAKTYEPDFWDNYTEAQKTLKELNRLKDDIEKYEELLKAQE-- 76 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + E + +E K++ E + + LL D S I+ + AG GG Sbjct: 77 ELTVLLQLLEEEENEELAVEAQDKAKKLMEKLHRMEIELLLSGPYDKNSAIVSLHAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +V L+RMY R+A + +KVE++ ++ G K + ++ G G + +K E GV Sbjct: 137 TEAQDWVEMLYRMYTRWAEDKGYKVELIDRLLGEEAGLKSVTFSVEGFGAYGYLKAERGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 HR+ R+ + SGR HTS A+V VLPE ++++ E+++I+T R+ G+GGQHVN T Sbjct: 197 HRLIRISPFDFSGRRHTSFASVDVLPEVAEDIPEIELKEEELKIETFRSGGAGGQHVNKT 256 Query: 241 DSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--I 297 +SAVRITH+PTG +V +E+SQ NR A K+L+A+L D+E K+ E + R Q I Sbjct: 257 ESAVRITHLPTGITVVCQNERSQLMNRALAEKLLKAKLLDLEMKKKEEEMAKLRGEQKEI 316 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IRTY F + DHR + + ++ V+ G ID I L Sbjct: 317 AWG---SQIRTYVFHPYSLVKDHRTGVEVGDVQGVMDGEIDIFIEAYLKM 363 >gi|187250476|ref|YP_001874958.1| peptide chain release factor 2 [Elusimicrobium minutum Pei191] gi|186970636|gb|ACC97621.1| Peptide chain release factor 2 [Elusimicrobium minutum Pei191] Length = 371 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 175/343 (51%), Gaps = 12/343 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL---HT 64 ++ + K + A++E +S+ + + + +++ + ++E D + Sbjct: 28 RVGEKKEKLAKLEAEISKESFWNDSDNARQVSKEADAVKTELETFSALQKEMDDAVTYYE 87 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + NS++E+ +++ + + I + + D D + I+ I AG GG+E Sbjct: 88 MALEENSETEMGEISSFLIKIENELKE-----IEFKIKLSDPADRLNAIMHIHAGAGGTE 142 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A KV++ ++ G K + I G + +K E+GVHR Sbjct: 143 SCDWAQMLLRMYTRWAENHGLKVKITDILPGEEAGVKSVSLMIEGLYAYGYLKSENGVHR 202 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ R HTS A+ VLP EI ++I +D+ +DT R+ G+GGQ+VN ++A Sbjct: 203 LVRISPFDANSRRHTSFASCDVLPDIEDEIKIEIEEKDLEVDTFRSGGAGGQNVNKVETA 262 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI HIPTGI+V E+SQ QNR AMK+LRA+LY +E + +E Q G Sbjct: 263 VRIKHIPTGIVVACQIERSQLQNRQTAMKMLRAKLYQIEADKKRSEM-EKHYGQKGDIAW 321 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y F + + D R +++ V+ G +D + L Sbjct: 322 GHQIRSYVFMPYQLVKDLRTGYETSQVQAVMDGDLDAFMQSYL 364 >gi|325963891|ref|YP_004241797.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter phenanthrenivorans Sphe3] gi|323469978|gb|ADX73663.1| bacterial peptide chain release factor 2 (bRF-2) [Arthrobacter phenanthrenivorans Sphe3] Length = 371 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 162/350 (46%), Gaps = 7/350 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK AE+ R E D + + +S S++ + DL ++ Sbjct: 25 DVEALKEDIAELSERAGEPDLWDDPSAAQKITSRLSHRQSELERLNNLASRIDDLEVLVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + + E + L D++ ++ IRAG GG +AA Sbjct: 85 LGQDEDDAASMGEAAAELESIKKALKEL--EVVTLLSGEYDEREAVVSIRAGAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + V+ +S ++ G K + + + E+G HR+ R Sbjct: 143 FAEMLMRMYLRWAERHGYPTTVMDTSYAEEAGLKSATFEVKAPYAYGTLSVEAGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P ++IP +IR+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAAVEVIPLIEQTDSIEIPDNEIRVDVFRSSGPGGQSVNTTDSAVRL 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG +V+ +EKSQ QNR AM+VL++RL +++++ E+ A S ++ Sbjct: 263 THIPTGTVVSMQNEKSQLQNRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS--WGDQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +R+Y + + + D R + V G IDD I+ + Sbjct: 321 MRSYVLNPYQMVKDLRTEHEVGNTSAVFDGEIDDFIDAGIRWRTDNRNAE 370 >gi|320010490|gb|ADW05340.1| peptide chain release factor 2 [Streptomyces flavogriseus ATCC 33331] Length = 368 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 157/345 (45%), Gaps = 7/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDALRVDIAALEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKTETLRGRIDDLEVLFE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + LA+ E E + L D + ++ IRA GG +AA Sbjct: 85 LAEDEGDADALAEAESELESVRKALDE--MEVRTLLSGEYDAREALVTIRAEAGGVDAAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A +K EV ++ ++ G K + + + E G HR+ R Sbjct: 143 FAEKLQRMYLRWAERHNYKTEVYETAYAEEAGIKSTTFAVEVPYAYGTLSVEQGTHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V VLP V+I ++R+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFDNQGRRQTSFAGVEVLPVVEQTDHVEIDESELRVDVYRSSGPGGQGVNTTDSAVRL 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G + Sbjct: 263 THLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQAKMNALKGD--GGNSWGNQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y + + D R + E V G ID + + + Sbjct: 321 MRSYVLHPYQMVKDLRTEFEMGNPEAVFNGEIDGFVEAGIRWRKQ 365 >gi|229815728|ref|ZP_04446053.1| hypothetical protein COLINT_02777 [Collinsella intestinalis DSM 13280] gi|229808644|gb|EEP44421.1| hypothetical protein COLINT_02777 [Collinsella intestinalis DSM 13280] Length = 377 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 106/351 (30%), Positives = 167/351 (47%), Gaps = 12/351 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + + R E+E + D A ++ + +++ D ++ D + Sbjct: 30 IDEARGRVGELEQASAAPGFWDDADAARAHMAELAQVKGDVALVDGARERLSDARAALEL 89 Query: 69 HNSDSEIRDLAQIEVLAIEKEI-RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E + +E+ D S IL I+ G GG EA Sbjct: 90 AEEMGEEGGAEFVAEATEAAAELTHSIDEMELSSWFTGEFDHGSAILSIKPGQGGLEAQD 149 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LF+MY +Y A R WKV V + G T+ G+ F ++ E+GVHR+ R Sbjct: 150 WTFMLFKMYMKYCARRGWKVTVNDCPAAEVIGIDRATITVEGKDAFGMLRAEAGVHRLVR 209 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + T+A R T+ A V V+P +I +++ +DIR+D ASG GGQ VNTTDSAVR+ Sbjct: 210 ISPTDAKKRRQTTFAGVEVIPVLPDDIQIEVAPDDIRVDVYHASGPGGQGVNTTDSAVRV 269 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPTGI+V +E+SQ QN+ M++L+ARLY++E ++ + R K +IG G+ Sbjct: 270 THIPTGIVVTCQNERSQIQNKAACMQILKARLYELELQKREDTLDEIRGPKTEIGFGN-- 327 Query: 304 ERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTA--HQAK 350 +IR+Y + + D R + ++ VL G +D I QA+ Sbjct: 328 -QIRSYVLYPYQMVKDLRCGVETSNVDGVLEDGDLDPFIIGYHRWATEQAE 377 >gi|317506166|ref|ZP_07963987.1| peptide chain release factor 1 protein [Segniliparus rugosus ATCC BAA-974] gi|316255511|gb|EFV14760.1| peptide chain release factor 1 protein [Segniliparus rugosus ATCC BAA-974] Length = 354 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 144/354 (40%), Positives = 214/354 (60%), Gaps = 19/354 (5%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L + ++ R ++ V A K+ + A ++PI + + + + H + Sbjct: 5 LDELIAEYESLQERWADPSLQEDVAAAKKVGKRVAELAPIYEAHAQREAAQADLAAAHEL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + A+ EV + I EL+ E++ LL P+D D + +LE++AG GG E+ Sbjct: 65 AELD------PEFAKEEVERLTGRISELDEELDELLAPRDPHDGEDVVLEVKAGAGGEES 118 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG--------RGVFSRMK 177 ALF GDL RMY ++A R+W+VEVLS +++D GG K+ +I +GV++ +K Sbjct: 119 ALFAGDLIRMYTKFAERRRWRVEVLSIAESDLGGVKDATISIKRTGGDQSPAQGVWAWLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQH 236 E GVHRVQRVPATE+ GR+HTSAA V PE + +V I ++RID R+SG GGQ Sbjct: 179 HEGGVHRVQRVPATESQGRIHTSAAGVLAYPEPEDAPEVVIDESELRIDVYRSSGKGGQG 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++V +E+SQ QN+ RAM VL ARL + ++ A + ++ RK Sbjct: 239 VNTTDSAVRITHLPTGLVVTCQNERSQLQNKARAMVVLAARLEQLREEKAAADAASGRKE 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 QI + DRSERIRTYNF + RI DHRI L+ VL+G ++ +++ L +A Sbjct: 299 QIRTVDRSERIRTYNFPENRIADHRIGYKASNLDMVLEGDLEPMLSELRLKLKA 352 >gi|125543555|gb|EAY89694.1| hypothetical protein OsI_11230 [Oryza sativa Indica Group] Length = 468 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 159/343 (46%), Gaps = 17/343 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R ++ + + D + K++ E+ + I ++ ++Q+ E D+ + + Sbjct: 127 ILERSRQLSVVLERPDLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLARE 186 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + L +D SC +E++AG GG+E+ + Sbjct: 187 EDDNELETETMRALAEMRRSAKE-----KELNALLSGDNDSCSCFIEVQAGAGGTESMDW 241 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MY +A R + V ++ + G K + G F K E GVHR+ R+ Sbjct: 242 AAMVMNMYSSWAQRRGYTVSIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRI 301 Query: 189 PATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++ R HTS A VAV+P I D+RI+ R+ G GGQH N T+SAVRI Sbjct: 302 SPFDSGKRRHTSFAAVAVVPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRI 361 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 HIPTGI +E+SQH N+ AM VL++RL +E R A + + + +I G+ Sbjct: 362 VHIPTGITATCQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNADHTQSLSEISWGN-- 419 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R + D R N + + VL G +DD I L+ Sbjct: 420 -QIRSYVLHPYRMVKDLRTNYEVSDPDSVLNGDLDDFILNFLS 461 >gi|154175392|ref|YP_001408592.1| peptide chain release factor 2 [Campylobacter curvus 525.92] gi|112803979|gb|EAU01323.1| peptide chain release factor 2 [Campylobacter curvus 525.92] Length = 372 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 107/346 (30%), Positives = 186/346 (53%), Gaps = 14/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K R EIE E K L +E IS +++K + + ++L+ + Sbjct: 31 QSIKERLQEIERLEHEPDFWQDIAKAGALNKEKTKISNMLAKFTNAKAAVDDAKELYELA 90 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + E+ + +L DD+K+ I+ I G GG+E+ Sbjct: 91 NSESDEE-----TLNSLFDDATELENKITALEISMLLSGEDDNKNAIISIHPGAGGTESN 145 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +KVE L + D+ G K++ + G + +K E+G+HR+ Sbjct: 146 DWASMLYRMYLRFCEREGFKVETLDFQEGDEAGLKDVSFIVKGENAYGYLKAENGIHRLV 205 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++GR HTS ++V V P +I+++I +D++IDT RASG+GGQHVN T+SA+R Sbjct: 206 RTSPFDSAGRRHTSFSSVMVSPEIDDDIEIEIEEKDLKIDTYRASGAGGQHVNKTESAIR 265 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+PTGI+V +++SQH+NR AMK+L++RLY++E + ++ K +IG G Sbjct: 266 ITHMPTGIVVQCQNDRSQHKNRATAMKMLKSRLYELELMKQQEASNSVEKSEIGWG---H 322 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y F ++ D+R + + +L G I +I +L + ++ Sbjct: 323 QIRSYVLFPYQQVKDNRSGQAFSQTDAILDGDIKKMIEGVLISQKS 368 >gi|310766541|gb|ADP11491.1| peptide chain release factor 2 [Erwinia sp. Ejp617] Length = 300 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + Q ++ L + + + + +K + + + Sbjct: 2 VETLDQMTQGLEDVSGLLELAVEAEDEETFNEAVAELDGLDKKLGE-----LEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C ++I+AG+GG+EA + L RMY R+A + +K E++ SD + G K Sbjct: 57 EYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGEVAGTKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G F ++ E+GVHR+ R ++ GR HTS ++V + PE ID++I D+RI Sbjct: 117 KIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDNIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ E + Sbjct: 177 DVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQ 236 Query: 284 RMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + ++ + + K IG G +IR+Y RI D R ++ + VL G +D I Sbjct: 237 KKNADKQTAEDNKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIE 293 Query: 342 PLLTA 346 L A Sbjct: 294 ASLKA 298 >gi|15892291|ref|NP_360005.1| peptide chain release factor 2 [Rickettsia conorii str. Malish 7] gi|24638155|sp|Q92IQ2|RF2_RICCN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|15619432|gb|AAL02906.1| peptide chain release factor RF-2 [Rickettsia conorii str. Malish 7] Length = 368 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 175/339 (51%), Gaps = 10/339 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R +E ++ + + S + K++ +++ K +D + +++ Sbjct: 30 ERLNALEELTADPSLWNDQANAQKLLREKSNLEEKLNAFNKLKSNLKDALELEEMAEAEN 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 ++ L+Q + K + + + L D +C LEI AG GG+E+ + + Sbjct: 90 DLETLSQ--IEQDLKNLSIIAAKFETECLFSGEADGNNCFLEINAGAGGTESHDWASIMM 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ R+ A Sbjct: 148 RMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTETGVHRLVRISPFNA 207 Query: 194 SGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPTG Sbjct: 208 AGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPTG 267 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G +IR+Y Sbjct: 268 TVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG---HQIRSY 324 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R + + VL G +++ ++ L + Sbjct: 325 VLQPYHMVKDLRTDYETSDTKGVLDGDLEEFVSAHLAMN 363 >gi|301029486|ref|ZP_07192568.1| putative peptide chain release factor 1 [Escherichia coli MS 196-1] gi|299877629|gb|EFI85840.1| putative peptide chain release factor 1 [Escherichia coli MS 196-1] Length = 219 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 124/217 (57%), Positives = 169/217 (77%), Gaps = 2/217 (0%) Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTSA Sbjct: 1 RRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSAC 60 Query: 203 TVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+ Sbjct: 61 TVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDER 120 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDRS+R RTYNF QGR+TDHR Sbjct: 121 SQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHR 180 Query: 321 INLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 INLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 181 INLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 217 >gi|209527406|ref|ZP_03275912.1| peptide chain release factor 2 [Arthrospira maxima CS-328] gi|209492141|gb|EDZ92490.1| peptide chain release factor 2 [Arthrospira maxima CS-328] Length = 339 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 91/337 (27%), Positives = 154/337 (45%), Gaps = 13/337 (3%) Query: 20 ELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E ++ D + + + + ++ + + + ++ + ++ + +S + Sbjct: 2 EQLAAQPNFWDDQTQAQKTLQTLSDLKSVLQQQQDWRKTLEDTGAIAELLELEDDESLRQ 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + V R L D +L I AG GG++A + L RMY Sbjct: 62 EAESNVVHLGRDIDRW-----ELQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+ + +KV + S+ D+ G K + G + +K E G HR+ R+ A+G+ Sbjct: 117 TRWGEAQGYKVHLAEISEGDEAGIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGK 176 Query: 197 VHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 TS A V ++P E I++DIP +D+ I T RA G GGQ+VN ++AVRI HIPTGI Sbjct: 177 RQTSFAGVEIMPILDEGAINLDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIA 236 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V + E+SQ QNR +AM +L+A+L V +++ A + R + +IR Y F Sbjct: 237 VRCTQERSQLQNREKAMALLKAKLLVVAQEQRAQAIAEIRGDLVE-AAWGNQIRNYVFHP 295 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + + D R + V+ G +D I L Sbjct: 296 YQMVKDLRTGEETTAINDVMNGELDGFIQAYLRQENQ 332 >gi|1402638|dbj|BAA13170.1| PrfB [Streptomyces coelicolor] Length = 368 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 100/348 (28%), Positives = 165/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + +S + +++ + + DL + Sbjct: 25 DLDRLRADIAVLEEQAAAPSLWDDPEAAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ A+ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELAAVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K EV +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQHGYKTEVYETSYAEEAGIKSTTFAVQSPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V +LP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEILPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTGI+V +E+SQ QN+ AM VL+A+L + R+ + A + G Sbjct: 261 RLTHIPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R+R+Y + + D R + E V G ID + + + + Sbjct: 319 NRVRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQR 366 >gi|257060501|ref|YP_003138389.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802] gi|256590667|gb|ACV01554.1| hypothetical protein Cyan8802_2694 [Cyanothece sp. PCC 8802] Length = 375 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 161/344 (46%), Gaps = 7/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L ++E ++ D + ++ + S + Y Q + +DL + Sbjct: 35 DLPALNANIQDLEQIAAQPDFWDNQETAQKTLQQLNDLKSSVEEYHQWMGQLEDLKAIAE 94 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + E + + L D K +L I AG GG++A Sbjct: 95 LLELEEDATLNEEAEANLTQLNHEL--DRWELQRLLSGIYDSKGAVLTINAGAGGTDAQD 152 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+ + +KV + S+ D+ G K I GR + +K E G HR+ R Sbjct: 153 WAEMLLRMYTRWGEQQGYKVHLTEISEGDEAGIKSATLEIEGRYAYGYLKGEKGTHRLVR 212 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A + V+P E ++ V+IP +D+ I T R+ G GGQ+VN ++AVR Sbjct: 213 ISPFNANGKRQTSFAGIEVMPALEEEDLKVEIPEKDLEITTTRSGGKGGQNVNKVETAVR 272 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H+PTGI V + E+SQ QN+ +A+ +L+A+L + +++ A + R + Sbjct: 273 VVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQEQRAQAIAEIRGDMVE-AAWGN 331 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y F + + D R N + V+ G +D I L ++ Sbjct: 332 QIRNYVFHPYQMVKDVRTNTETTDVNGVMDGKLDLFIESYLRSN 375 >gi|188534903|ref|YP_001908700.1| Putative peptide chain release factor 2 [Erwinia tasmaniensis Et1/99] gi|188029945|emb|CAO97829.1| Putative peptide chain release factor 2 [Erwinia tasmaniensis Et1/99] Length = 300 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 160/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + Q ++ L + + + + +K + + + Sbjct: 2 VDTLDQMTQGLEDVSGLLELAVEAEDEETFNEAVAELDGLDKKLAE-----LEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C ++I+AG+GG+EA + L RMY R+A + +K E++ SD + G K Sbjct: 57 EYDSADCYMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGEVAGTKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G F ++ E+GVHR+ R ++ GR HTS ++V + PE ID++I D+RI Sbjct: 117 KIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDNIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ E + Sbjct: 177 DVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQ 236 Query: 284 RMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + ++ + + K IG G +IR+Y RI D R ++ + VL G +D I Sbjct: 237 KKNADKQTAEDNKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIE 293 Query: 342 PLLTA 346 L A Sbjct: 294 ASLKA 298 >gi|115452569|ref|NP_001049885.1| Os03g0305700 [Oryza sativa Japonica Group] gi|108707729|gb|ABF95524.1| peptide chain release factor 2 family protein, expressed [Oryza sativa Japonica Group] gi|113548356|dbj|BAF11799.1| Os03g0305700 [Oryza sativa Japonica Group] gi|215707188|dbj|BAG93648.1| unnamed protein product [Oryza sativa Japonica Group] Length = 468 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 159/343 (46%), Gaps = 17/343 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R ++ + + D + K++ E+ + I ++ ++Q+ E D+ + + Sbjct: 127 ILERSRQLSVVLERPDLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLARE 186 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + L +D SC +E++AG GG+E+ + Sbjct: 187 EDDNELETETMRALAEMRRSAKE-----KELNALLSGDNDSCSCFIEVQAGAGGTESMDW 241 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MY +A R + V ++ + G K + G F K E GVHR+ R+ Sbjct: 242 AAMVMNMYSSWAQRRGYTVSIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRI 301 Query: 189 PATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++ R HTS A VAV+P I D+RI+ R+ G GGQH N T+SAVRI Sbjct: 302 SPFDSGKRRHTSFAAVAVVPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRI 361 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 HIPTGI +E+SQH N+ AM VL++RL +E R A + + + +I G+ Sbjct: 362 VHIPTGITATCQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNADHTQSLSEISWGN-- 419 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R + D R N + + VL G +DD I L+ Sbjct: 420 -QIRSYVLHPYRMVKDLRTNYEVSDPDSVLNGDLDDFILNFLS 461 >gi|157363562|ref|YP_001470329.1| peptide chain release factor 2 [Thermotoga lettingae TMO] gi|166977374|sp|A8F531|RF2_THELT RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157314166|gb|ABV33265.1| peptide chain release factor 2 [Thermotoga lettingae TMO] Length = 367 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 170/336 (50%), Gaps = 8/336 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L ++E MS+ K E + I +S + ++ +D+ I Sbjct: 27 DKLNMELKKMESEMSDPEIWKDQRKAGEISKKVRRIKELLSDISEIERNFEDIDVGIELS 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D I + I +E+ + L+ D D + L I G GG+E+ + Sbjct: 87 EEDPGIAQD----IEKIVQEVEKNIRRFQLELILNDPLDQNNAYLSIHPGAGGTESHDWA 142 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + + VE+L ++ G K + G + +K E GVHR+ R+ Sbjct: 143 QMLLRMYMRWAERKGFIVELLDFQPGEEAGLKSATILVKGEYAYGYLKHERGVHRLVRIS 202 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ R HTS A+V V+PE + +IDV+I EDIRIDT RASG GGQ+VN TDSAVRITH Sbjct: 203 PFDAAKRRHTSFASVNVVPEISDDIDVEIKPEDIRIDTFRASGHGGQYVNRTDSAVRITH 262 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V SE+SQHQN+ AMKVL+A+LY +E + + + ++ +IR Sbjct: 263 LPTGIVVSCQSERSQHQNKALAMKVLKAKLYQLELAKRREQLDEI-QGELKEISWGNQIR 321 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINP 342 +Y + DHR ++ + VL G +D I Sbjct: 322 SYILQPYTLVKDHRTDIETGNFDAVLDGELDQFIEA 357 >gi|300853467|ref|YP_003778451.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528] gi|300433582|gb|ADK13349.1| peptide chain release factor B [Clostridium ljungdahlii DSM 13528] Length = 329 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 174/329 (52%), Gaps = 6/329 (1%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 +M E D + E + + K+ +Y++ + D + + ++ D Sbjct: 2 KMQEPNFWDHLERAQEVTSEEKFLNEKLDMYNKLESRINDAEILAHIAEEEEDVSD--CK 59 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 ++L+ ++I + +++ +L D + IL + G GG++A + L RMY R+A Sbjct: 60 DILSEVEDIENIIDKLKIEILLSGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYTRWAE 119 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +KVE L DD G K + I G + +K E G+HR+ R+ A+G+ TS Sbjct: 120 KSGYKVETLDILPADDAGIKSVSLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 179 Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V VLPE + D+DI ED+R+DT R+SG+GGQHVN T+SAVRITHIPTGI+V +E Sbjct: 180 ASVEVLPELTKDQDIDIRPEDLRVDTYRSSGAGGQHVNKTESAVRITHIPTGIVVQCQNE 239 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITD 318 +SQH NR AM +L+++L +++ +R E+ + ++ +IR+Y F + D Sbjct: 240 RSQHYNRETAMLMLKSKLVELK-ERAHKEKIEDLAGELKDMGWGSQIRSYVFHPYTLVKD 298 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAH 347 HR + + V+ G ID+ I L Sbjct: 299 HRTGVENGNVSSVMDGEIDNFILAYLRQQ 327 >gi|120555185|ref|YP_959536.1| peptide chain release factor 2 [Marinobacter aquaeolei VT8] gi|120325034|gb|ABM19349.1| bacterial peptide chain release factor 2 (bRF-2) [Marinobacter aquaeolei VT8] Length = 310 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 97/316 (30%), Positives = 166/316 (52%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + + I+ I + + L + + + + ++++ ++ + Sbjct: 1 MGKERSDLELIVKTIDNLTNGLADAESLLDMAVEEDDEGTVQEIEADLENLDKELEK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + + D + L+I+AG+GG+EA + L RMY R+A R +K E++ + Sbjct: 58 --LEFRRMFSGEMDANNAYLDIQAGSGGTEAQDWGNMLLRMYLRWAERRGFKAEIVELQE 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 + G K I G + ++ E+GVHR+ R ++ R HTS ++V V PE Sbjct: 116 GEVAGIKSATIHIQGDYAYGWLRTETGVHRLVRKSPFDSGNRRHTSFSSVFVSPEVDDSF 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +++I D+R+D RASG+GGQHVN T+SAVR+TH PTGI+V + +SQHQN+ +AMK Sbjct: 176 EIEINPADLRVDVYRASGAGGQHVNRTESAVRLTHNPTGIVVACQAGRSQHQNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANER--SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+L+++E ++ E+ + + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLFELEMQKRNEEKQKAEDSKSDIGWG---SQIRSYVLDDSRIKDLRTKVETSNTQS 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G ID I L Sbjct: 293 VLDGDIDKFIEASLKM 308 >gi|289678406|ref|ZP_06499296.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae FF5] Length = 219 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 123/219 (56%), Positives = 161/219 (73%), Gaps = 2/219 (0%) Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 R +VE+LS ++ + GGYKE++A + G V+ ++KFESG HRVQRVP TE+ GR+HTS Sbjct: 1 ERRGGRVEILSENEGEHGGYKEVIARVEGDSVYGKLKFESGAHRVQRVPETESQGRIHTS 60 Query: 201 AATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A TVAVLPE E ++I D+R+DT R+SG+GGQHVN TDSA+RITH+P+GI+V Sbjct: 61 ACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQHVNKTDSAIRITHLPSGIVVECQE 120 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITD 318 E+SQH+NR RAM L A+L D + AN ++ RKL +GSGDRSERIRTYNF QGR+TD Sbjct: 121 ERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERIRTYNFPQGRVTD 180 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 HR+NLTLY L+ VL G +D +I PLL +QA + + E Sbjct: 181 HRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAALGE 219 >gi|124515298|gb|EAY56808.1| Peptide chain release factor 2 [Leptospirillum rubarum] Length = 370 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 118/348 (33%), Positives = 171/348 (49%), Gaps = 21/348 (6%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 LK +I+ + D K+ E + + +S I +++ + + L + Sbjct: 17 DRLKVTLEQIDAQSQSPEFWKDSDRARKMLREKSRLEKRLSLIQGIEKEDADIRALFELA 76 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 SD + V + ++ E + D D LEI G GG+E+ Sbjct: 77 ----SDPDFLAELSRRVPEFSESVKAFEL----EEILSDAKSDNPAFLEIHPGAGGTESQ 128 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A VEV+ ++ G K + G F + ESG+HR+ Sbjct: 129 DWAQMLLRMYIRWAERHGMTVEVIDIQSGEEAGIKSATILVRGEHAFGYLMSESGIHRLV 188 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ R HTS +V V PE +I V+I EDIRIDT RAS +GGQHVN T SA+R Sbjct: 189 RISPFDANKRRHTSFTSVFVYPELEDDIPVEIRDEDIRIDTFRASSAGGQHVNKTSSAIR 248 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER----SANRKLQIGSG 300 +TH+PTGI++ + +E+SQ QNR A KVLRA+LY++E KR E A K +IG G Sbjct: 249 LTHLPTGIVISSQNERSQLQNREMAFKVLRAKLYELEEKRKKEELDKISGAQNKKEIGWG 308 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + I DHR L K+ VL G +D I L A Sbjct: 309 ---HQIRSYVLQPYQLIKDHRTGLETGKVSEVLDGDLDMFIRGYLLAR 353 >gi|108759158|ref|YP_632896.1| peptide chain release factor 2 [Myxococcus xanthus DK 1622] gi|108463038|gb|ABF88223.1| peptide chain release factor 2 [Myxococcus xanthus DK 1622] Length = 373 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 94/345 (27%), Positives = 165/345 (47%), Gaps = 16/345 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDL 62 H + ++R A IE + D K +E + + + + + Q L Sbjct: 22 HLDLDRKRSRIALIERDSTLPTFWDDNTKAQALLKEKSTLEASVGAYDKVMRGLDDAQVL 81 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + N ++ ++ + ++ + D SC ++I AG GG Sbjct: 82 FELAVEANDEATTQEAEGS-----LTGLEGDVAKLELARMLSGEQDRSSCFMDINAGAGG 136 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +++ + L RMY RY + WKVE+ ++ G+K + I G + +K E GV Sbjct: 137 TDSMDWAAMLLRMYTRYCENKGWKVEINDEVPGEEAGFKNVSLRIEGDFAYGYLKAEVGV 196 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +A+ R T+ A+V V PE I +DIP +DI + +R G+GGQ VN T Sbjct: 197 HRLVRISPFDANARRQTAFASVDVYPEVDDTIQIDIPEKDIDLKFIRGGGAGGQKVNKTS 256 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR--MANERSANRKLQIG 298 S ++ H+PTGI++ +E+SQ N+ A K+LR RLY++E K+ A + + +K I Sbjct: 257 STAQLRHLPTGIIITCQTERSQSANKDMAFKILRGRLYELEMKKREAARDAAEAQKKDIS 316 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 G +IR+Y + R + D R + ++ VL G +++ + Sbjct: 317 FG---SQIRSYVLAPYRMVKDLRTGIETGNVDAVLDGDLEEFVTS 358 >gi|291439311|ref|ZP_06578701.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] gi|291342206|gb|EFE69162.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] Length = 368 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 165/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDRMRADIAVLEEQAAAPSLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ + K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAEAELADVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQHGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP VDI D+R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQSDHVDIDESDLRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V +E+SQ QNR AM VL+A+L + R+ + A + G Sbjct: 261 RITHIPTGIVVSCQNERSQIQNRATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWRKQQ 366 >gi|291287317|ref|YP_003504133.1| peptide chain release factor 2 [Denitrovibrio acetiphilus DSM 12809] gi|290884477|gb|ADD68177.1| peptide chain release factor 2 [Denitrovibrio acetiphilus DSM 12809] Length = 371 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 105/345 (30%), Positives = 172/345 (49%), Gaps = 17/345 (4%) Query: 10 CDLKNRFAEIELR-MSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +LK +E++ MS+ ++ L +E A + + ++ + L + Sbjct: 27 DELKKAISEVDNLSMSDPNFWNSKESKVLMKEQAINKKKLEEWHELTGLLEDTEVLIELY 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + E ++ + + + L+ +D + I+ I +G GG+EA Sbjct: 87 KEGEQGVE------ADIETSIRTLEKTIAHFELKLVLSGQNDGNNAIITINSGAGGTEAN 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY YA +K ++L + ++ G K I G + +K E+GVHR+ Sbjct: 141 DWAAMLYRMYTHYAERNGYKCDILDYMEGEEAGIKNATINIKGAFTYGYLKGETGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS A V V+PE + E D+ IDT RASG+GGQHVNTTDSAVR Sbjct: 201 RISPYDSANRRHTSFAAVFVMPEIEDDIEIDISEADLHIDTYRASGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITH+PTG +V SE+SQH+N+ AMK+L++RLY++E + E+ K +IG G+ Sbjct: 261 ITHVPTGTVVTCQSERSQHKNKAHAMKILKSRLYELEIDKKNEEKQKLESTKTEIGWGN- 319 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + D R ++ V+ G +D I L Sbjct: 320 --QIRSYVMHPYKMVKDLRTRHETGNVDAVMDGNLDAFIRAYLLH 362 >gi|254577375|ref|XP_002494674.1| ZYRO0A07040p [Zygosaccharomyces rouxii] gi|238937563|emb|CAR25741.1| ZYRO0A07040p [Zygosaccharomyces rouxii] Length = 393 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 145/361 (40%), Positives = 205/361 (56%), Gaps = 15/361 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+ +++ +S+ D + + Y+ +S I S Y + + L +I Sbjct: 38 KKAHQSVQEIVQLDQALSKGDGFD--AETQKTYSRVSSIRSMYEEYQELLDNLKGLQEMI 95 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 +D ++D A+ E + R++ N + LLP +K+CILE+R G GG+EA Sbjct: 96 Q---TDPSLKDDAKSEFDNSLPQFRQVSNNLLRKLLPPHPFAEKACILELRPGVGGTEAM 152 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRV 185 +F DL MY YA WK V++ ++N G G + + +I G + ++K+ESGVHRV Sbjct: 153 IFTQDLLNMYIGYAQYHHWKYHVIAQNENQSGNGLVDAILSIDEPGAYDKLKYESGVHRV 212 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVD-------IPLEDIRIDTMRASGSGGQHVN 238 QR+PATE GR HTS A V VLP+ E D ++IRID MRA G GGQHVN Sbjct: 213 QRIPATETKGRTHTSTAAVIVLPQIVESVKDAEQSERSFRPDEIRIDVMRAGGKGGQHVN 272 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVRITH P+GI+V E+SQH+N+ +A VLRARL + ERK N A RK Q+ Sbjct: 273 TTDSAVRITHFPSGIVVAMQDERSQHKNKAKAFAVLRARLAERERKEKENSERAARKDQV 332 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 + DRS++IRTYN+ Q RITDHR N TLY +E V G +D++I+ + + S Sbjct: 333 TTTDRSDKIRTYNYPQNRITDHRCNFTLYDIEGVTSGVKLDEVIDSMAARDFEERSKSLI 392 Query: 357 E 357 E Sbjct: 393 E 393 >gi|159027417|emb|CAO86901.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 330 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 153/324 (47%), Gaps = 7/324 (2%) Query: 26 SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 D + ++ S + Y ++ +D +I +S+ L + Sbjct: 5 PTFWDNPDTAQKTLQELNECKSSLETYQSWCEQLEDTKAIIELLELESDRALLEEATDNI 64 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKW 145 + + L D K +L I AG GG++A + L RMY R+A + + Sbjct: 65 THLQHDL--DRWELQQLLNGPYDPKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGY 122 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + S+ D+ G K + I+G + +K E G HR+ R+ A+G+ TS A V Sbjct: 123 KVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVE 182 Query: 206 VLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V+P + V+IP +D+ I T R+ G GGQ+VN ++AVR+ H+PTGI V + E+SQ Sbjct: 183 VMPILGDDVVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQ 242 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRI 321 QN+ +A+ +L+A+L + R++ A + R + +IR Y F + + D R Sbjct: 243 LQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVE-AAWGNQIRNYVFHPYQLVKDLRS 301 Query: 322 NLTLYKLEYVLQGYIDDIINPLLT 345 N+ + V+ G +D I L Sbjct: 302 NVETTDVTGVMNGDLDSFIEAYLR 325 >gi|210620542|ref|ZP_03292090.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275] gi|210155256|gb|EEA86262.1| hypothetical protein CLOHIR_00033 [Clostridium hiranonis DSM 13275] Length = 349 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 177/343 (51%), Gaps = 9/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I LK + E E M + + + + ++Q ++ +D+ +I Sbjct: 5 DIERLKEKIIENEQDMERQDFWEDNENAHKVLQENKKLCETVEKFEQLQKNLEDIEVLIE 64 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + D+ + +I + ++ LL + D + I+ I AGTGG +A Sbjct: 65 LGLEEDDSEDIEKEVSDSINQLKDVIDEMTIQTLLSGEYDK-NNAIVSINAGTGGLDAQD 123 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A R +KV++L + + G K V I G + +K E GVHR+ R Sbjct: 124 WAQMLLRMYIRWAEGRDYKVKLLDLISDPEAGIKTAVMLIQGDNAYGYLKGEKGVHRIVR 183 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + SG+ HTS A+V V+PE I+V+I D++IDT RASG+GGQHVNTTDSAVRI Sbjct: 184 ISPFDPSGKRHTSFASVDVIPELDENIEVEINQSDLKIDTYRASGAGGQHVNTTDSAVRI 243 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRS 303 TH+PTGI V +E+SQH NR AM++L A+L D++ + + QI G Sbjct: 244 THLPTGITVQCQNERSQHLNREVAMRMLMAKLIDIKEMEQKEKIEDLQGKYTQITWG--- 300 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N ++ V+ G ID IN LT Sbjct: 301 SQIRSYVFQPYKMVKDHRTNTETGNVDAVMNGNIDIFINSYLT 343 >gi|315586172|gb|ADU40553.1| peptide chain release factor RF2 [Helicobacter pylori 35A] Length = 385 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 49 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESAELFELA 108 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 109 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 163 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 164 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 223 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 224 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 283 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 284 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 340 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 341 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 383 >gi|239930935|ref|ZP_04687888.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] Length = 352 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 165/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A +E + + D + + + +S + +++ + + DL + Sbjct: 9 DLDRMRADIAVLEEQAAAPSLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFE 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ + K + E+E L D + ++ IRA GG +A Sbjct: 69 MAEEEDDPDTRAEAEAELADVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K E+ +S ++ G K + + + E G HR+ Sbjct: 125 ADFAEKLQRMYLRWAEQHGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 184 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP VDI D+R+D R+SG GGQ VNTTDSAV Sbjct: 185 VRISPFDNQGRRQTSFAGVEVLPVVEQSDHVDIDESDLRVDVYRSSGPGGQGVNTTDSAV 244 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V +E+SQ QNR AM VL+A+L + R+ + A + G Sbjct: 245 RITHIPTGIVVSCQNERSQIQNRATAMNVLQAKLLERRRQEEQAKMDALKGD--GGNSWG 302 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G ID + + + + Sbjct: 303 NQMRSYVLHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWRKQQ 350 >gi|313847717|emb|CBY16707.1| putative peptide chain release factor 2 [Chlamydophila psittaci RD1] Length = 368 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 114/346 (32%), Positives = 171/346 (49%), Gaps = 11/346 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + +E + + + I+ + +IS Y++ K +L + Sbjct: 24 DLEGKRQELSILEEQTLKEDFWQDVTSAGKVSERIASLKRQISHYEEFKVRVDNLAFFLN 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D D + ++ + +E L D C L I AG GG+E+ Sbjct: 84 D--GDVSADPELREDLEKEFAICENILSEWETQRLLSGEVDKNPCFLTINAGAGGTESCD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V LFRMY R+AA +WKVEV+ + D G K + SG + K E GVHR+ R Sbjct: 142 WVEMLFRMYCRWAAQHQWKVEVIDRQEGDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P EI++DI D+RIDT R+SG+GGQHVN TDSAVRI Sbjct: 202 ISPFDSNAKRHTSFASVDVYPEIDDEIEIDIRPNDLRIDTFRSSGAGGQHVNVTDSAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 THIPTGIMV E+SQ QNR MK+LRAR+Y + ++ +RK +I G Sbjct: 262 THIPTGIMVSCQRERSQIQNRESCMKMLRARMYQQILQERLEKQLIDRKNKKEIAWG--- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 +IR Y F + D R ++ ++ G +DD + L + Sbjct: 319 SQIRNYVFQPYTLVKDVRTGHETGNVQAMMDGELLDDFVKAYLAEY 364 >gi|91205413|ref|YP_537768.1| peptide chain release factor 2 [Rickettsia bellii RML369-C] gi|122425715|sp|Q1RIY5|RF2_RICBR RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|91068957|gb|ABE04679.1| Peptide chain release factor RF-2 [Rickettsia bellii RML369-C] Length = 368 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 100/339 (29%), Positives = 175/339 (51%), Gaps = 10/339 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R AE+E + + + S + ++ Y++ + +D + +++ Sbjct: 30 ARLAELEELAASPDLWNDQANAQKLLREKSNLEEQLGAYNKIRSNLKDALELEEMAEAEN 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 ++ +V + + + + L D +C LEI AG GG+E+ + + Sbjct: 90 DLE--IMQQVEKDLQSLSTIAAKFETECLFSGEADSNNCFLEINAGAGGTESHDWASIMM 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A +K E+++ + ++ G K I GR + +K E+GVHR+ R+ A Sbjct: 148 RMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGRRAYGWLKTEAGVHRLVRISPFNA 207 Query: 194 SGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 +G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPTG Sbjct: 208 AGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPTG 267 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G +IR+Y Sbjct: 268 TVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG---HQIRSY 324 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +++ ++ L + Sbjct: 325 VLQPYQMVKDLRTDYETSDTKGVLDGDLEEFVSASLAMN 363 >gi|294010764|ref|YP_003544224.1| peptide chain release factor RF-2 [Sphingobium japonicum UT26S] gi|292674094|dbj|BAI95612.1| peptide chain release factor RF-2 [Sphingobium japonicum UT26S] Length = 375 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 166/341 (48%), Gaps = 16/341 (4%) Query: 14 NRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E+ R+ + D ++ E + I D +K + +L + Sbjct: 30 RRLDELNARVEDPTLWDNQRQAQEVMRERTRLDAAIGATRAIDSEKTDTAELIEMAEAEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + ++ L D LEI AG GG+E+ + Sbjct: 90 DEDMVNEAIASLKALADRADE-----DKIKALLAGEADASDTYLEIHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A R +KVE++ D G K G + K ESGVHR+ R+ Sbjct: 145 MLSRMYRRWAERRGYKVELVDYQAGDQAGIKSATFLFKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V P I++++ D++IDT RASG+GGQHVNTTDSAVRITH+ Sbjct: 205 YDSSARRHTSFSSVWVYPVIDDNIEIEVNESDLKIDTYRASGAGGQHVNTTDSAVRITHV 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 P+GI+V + +++SQH+NR AM +L+ARLY+ E +R S K +IG G +I Sbjct: 265 PSGIIVASQNDRSQHKNRATAMNMLKARLYEAELRRREEAASGEYQAKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y + + D R +T + VL G +D + L+ Sbjct: 322 RSYVLQPYQLVKDLRTGVTSTSPDDVLDGALDPFMAAALSQ 362 >gi|148560211|ref|YP_001258893.1| peptide chain release factor 2 [Brucella ovis ATCC 25840] gi|256369345|ref|YP_003106853.1| peptide chain release factor 2 [Brucella microti CCM 4915] gi|148371468|gb|ABQ61447.1| peptide chain release factor 2 [Brucella ovis ATCC 25840] gi|255999505|gb|ACU47904.1| peptide chain release factor 2 [Brucella microti CCM 4915] Length = 375 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 109/346 (31%), Positives = 164/346 (47%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + R + + KL E + I+ I+ Q + +L + Sbjct: 26 DQAVKRLGYLNQRAEDPTLWNDAQEAQKLMRERQQLEDSINGINHLKQTLNDSVELIAMG 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + S + D + ++ + +L D LE+ AG GG+E+ Sbjct: 86 EEEGDKSIVEDAEKTIRDLKDEI-----DRRQIDMLLSGEADANDTYLEVHAGAGGTESQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A KVEV+ + ++ G K + G + +K ESGVHR+ Sbjct: 141 DWASMLLRMYTRWAERNGRKVEVMEVHEGEEAGIKSATILVKGHNSYGMLKTESGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS A++ V P I+V + D+RIDT RASG+GGQHVNTTDSAVR Sbjct: 201 RISPYDSNARRHTSFASIWVYPVIDDNIEVQVTEADVRIDTYRASGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 ITHI TGI+V +E+SQH+NR +A +LRARLY+ E K+ A K IG G Sbjct: 261 ITHIATGIVVQCQAERSQHKNREKAWSMLRARLYEEELKKREEATDAANATKTDIGWG-- 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G + + L Sbjct: 319 -HQIRSYVLQPYQLVKDLRTGVESTNPQEVLDGAVTPFMEAALAHR 363 >gi|225872704|ref|YP_002754161.1| peptide chain release factor 2, programmed frameshift [Acidobacterium capsulatum ATCC 51196] gi|225792505|gb|ACO32595.1| peptide chain release factor 2, programmed frameshift [Acidobacterium capsulatum ATCC 51196] Length = 384 Score = 206 bits (525), Expect = 3e-51, Method: Composition-based stats. Identities = 108/345 (31%), Positives = 177/345 (51%), Gaps = 11/345 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L++ A IE ++++ L + I ++ + ++ + + + Sbjct: 28 LRSELAAIETKLADPALWSNPQLSQPLMRDRKRIEEQLAYDTELARRSGDIDAYFELARE 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E + ++ + E ++ + D + I+ + G GG+E+ + Sbjct: 88 SEAAGEADANLEADLSREISALGEYVEKLESRTMLSGETDALNAIVTVHPGAGGTESQDW 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + +K E+ D ++ G K TI G F ++ E+GVHR+ R+ Sbjct: 148 AEMLMRMYLRWAEQQGFKTEMNDYQDGEEAGIKSATFTIIGDYAFGQLSGETGVHRLVRI 207 Query: 189 PATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + + R HTS A+V V PE + +DI +++R DT R+ G GGQHVNTTDSAVRIT Sbjct: 208 SPFDQAKRRHTSFASVFVSPEIDDSIQIDIKPDELRTDTYRSGGKGGQHVNTTDSAVRIT 267 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSE 304 HIPTGI+V +E+SQH+NR +AMK+LR+RLY+ E + E + + KL I + Sbjct: 268 HIPTGIVVQCQNERSQHKNREKAMKMLRSRLYEYELAKKQAETKKLEDSKLDI---NFGS 324 Query: 305 RIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y RI DHR + + ++ VL GY+D I LT + Sbjct: 325 QIRSYVLQPYRIAKDHRTKVEVGDVDRVLDGYLDPFIRGYLTMRR 369 >gi|297571771|ref|YP_003697545.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM 20595] gi|296932118|gb|ADH92926.1| peptide chain release factor 2 [Arcanobacterium haemolyticum DSM 20595] Length = 376 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 175/353 (49%), Gaps = 13/353 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ + A++ + D K + +S S++ + + DL T+ Sbjct: 24 DVTALQTKIADLTEQSGAPDLWDDPEKAQGVTSQLSHAQSELDRVVKMGERVADLETLYD 83 Query: 66 --IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + SD+ + EV + +R +E+ L D++ ++ IR+G GG Sbjct: 84 MAVEESESDAAMGAELFAEVDGELERVRTDLSELEIKTLLSGEYDERDAVVTIRSGAGGV 143 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A R +K +V+ +S ++ G K +S + + E+G H Sbjct: 144 DAADWAQMLQRMYLRWAERRGYKTKVMDTSYAEEAGIKSTTFEVSAPYAYGTLSVEAGTH 203 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + GR TS A V V+P +DIP +++ID R+SG GGQ VNTTDS Sbjct: 204 RLVRISPFDNQGRRQTSFAAVEVIPLIETTDHIDIPESELKIDVFRSSGPGGQSVNTTDS 263 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS-- 299 AVR+THIPTGI+V+ EKSQ QNR A++VL++RL ++ E +A +K G Sbjct: 264 AVRMTHIPTGIVVSMQDEKSQIQNRAAALRVLQSRLL----QKRHEEEAAIKKELAGDVK 319 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 G +++R+Y + + D R + E V G ID I+ + +M Sbjct: 320 GAWGDQMRSYVLHPYQMVKDLRTGFEVGNTESVFDGDIDGFIDAGIRWRHGQM 372 >gi|256842745|ref|ZP_05548233.1| peptide chain release factor 2 [Lactobacillus crispatus 125-2-CHN] gi|256614165|gb|EEU19366.1| peptide chain release factor 2 [Lactobacillus crispatus 125-2-CHN] Length = 354 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 100/354 (28%), Positives = 169/354 (47%), Gaps = 16/354 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + + E +M++ + K + + + + K + + + + Sbjct: 1 MTLGGLFDLDAIDESIEINENKMAQPDFWNNQEKAQKLISETNRLKEKRDSFLKLQTSYE 60 Query: 61 D---LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 D ++ + +++ E + LL D + ++EI Sbjct: 61 DETTAVELLREEPDPDLQKEVEADLATLQEDF-----HNYELDLLLSGKYDSHNALMEIH 115 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 G GG+EA + L RMY+RY +K E+ ++ G K + A I G+ + +K Sbjct: 116 PGAGGTEAMDWGQMLLRMYQRYCDTAGFKFEINDYEPGEEAGLKSVSARIVGKNAYGMLK 175 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E+GVHR+ R+ +A+ R HTS A+V V+PE I +DI +D+R+D R+SG+GGQH Sbjct: 176 SENGVHRLVRISPFDAAKRRHTSFASVEVIPEVDDSIQIDIDPKDLRVDVYRSSGAGGQH 235 Query: 237 VNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 +N T SAVRITH+PTGI+ + +++SQ QNR AM LRA+L+ +E ++ ++ A + Sbjct: 236 INKTSSAVRITHLPTGIVTTSQAQRSQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGD 295 Query: 296 Q--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Q IG G +IR+Y F + D R + V+ G + I L Sbjct: 296 QKEIGWG---SQIRSYVFHPYNLVKDLRTGHETADAQGVMDGKLQPFIYSYLQW 346 >gi|78776561|ref|YP_392876.1| peptide chain release factor 2 [Sulfurimonas denitrificans DSM 1251] gi|123550812|sp|Q30TP0|RF2_SULDN RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|78497101|gb|ABB43641.1| bacterial peptide chain release factor 2 (bRF-2) [Sulfurimonas denitrificans DSM 1251] Length = 365 Score = 206 bits (525), Expect = 4e-51, Method: Composition-based stats. Identities = 106/345 (30%), Positives = 177/345 (51%), Gaps = 14/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R A+I+ + + ++ + K ++ + ++L+ + Sbjct: 27 DKLYKRVAQIDELENSQDFWNDSSNAALVQKDKTQCERKLKKYNLAKNAIDDAKELYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + I + +L + +L + D + IL I G GG+E+ Sbjct: 87 KEENDEDLIAECFNGAQHI-----EDLIRTMEIEVLLSEETDGNNAILSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY+R+A R W VEVL D+ G K++ ISG + +K E+G+HR+ Sbjct: 142 DWASILLRMYKRFAERRGWSVEVLDYQAGDEAGIKDVSLLISGENAYGYLKVENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS ++V V PE + I DIR+DT R+SG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFSSVMVSPEVDDDINIVIEDRDIRVDTYRSSGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHI TG++V +++SQH+NR AMK+L++RLY++E + E + K +IG G Sbjct: 262 ITHIATGVVVQCQNDRSQHKNRATAMKMLKSRLYELELENQKAEIAGIAKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y +I D R N+ + +L G ID +I +L + Sbjct: 319 QIRSYVMQPYQQIKDTRSNIAYSNVSAILDGDIDKMIEDVLISQN 363 >gi|190348057|gb|EDK40443.2| hypothetical protein PGUG_04541 [Meyerozyma guilliermondii ATCC 6260] Length = 421 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 130/352 (36%), Positives = 198/352 (56%), Gaps = 14/352 (3%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 ++ +E +++ + Y+ +S I+ Y Q + L +I + +D Sbjct: 69 KEYSVLEEAITKGNF---DQETNVRYSNLSVILDNYHRYVQDMENVAALKEMIAEE-TDP 124 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E++ A E+ + ++ + LLP + DK+ ILE+R G GGSEAALF GDL Sbjct: 125 EMQQEAIKELQHLVPNVQRSVKVLQARLLPPVSHSDKATILELRPGVGGSEAALFCGDLV 184 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY +A +KWK +S + G E++ +I G ++ ++ ESGVHRVQR+PATE Sbjct: 185 NMYINFANNKKWKWTKISEGLTNSGSLNEVIMSIDVPGSYNLLRHESGVHRVQRIPATET 244 Query: 194 SGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 GR+HTS A V VLP+ + + ++RIDTMRA G GGQHVNTTDSAVR Sbjct: 245 KGRIHTSTAAVVVLPKISEGTESSLKDDERQFAPGEVRIDTMRAGGKGGQHVNTTDSAVR 304 Query: 246 ITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI V + +SQ +N+ +A +LRARL +ER + E+ R Q+ + DRS+ Sbjct: 305 LTHIPTGIQVQQQDERSQPKNKAKAFSILRARLAALERDKEIAEQRKLRTDQVTTTDRSD 364 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 +IRTYNF Q R+TDHR +L+ ++ +QG +++II + + + Sbjct: 365 KIRTYNFPQNRVTDHRCGFSLHDIDGCMQGYKLEEIIEHVEEKELEDRLEAL 416 >gi|189218067|ref|YP_001938709.1| protein chain release factor B [Methylacidiphilum infernorum V4] gi|189184925|gb|ACD82110.1| Protein chain release factor B [Methylacidiphilum infernorum V4] Length = 337 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 110/330 (33%), Positives = 170/330 (51%), Gaps = 16/330 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKK---QEEQDLHTVIGDHNSDSEIRDLA 79 M+ K + + + +K S Y ++ + L+ ++ + S ++L Sbjct: 1 MASPSFWQTPEKAEKALSRSKELKAKFSDYKTLVNRFKDIEALYDLLQESEDPSLEKELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q +L + I L+ D D K+ IL + +G GG+EA + L RMY+RY Sbjct: 61 QE-----INAYSDLLDSIEVKLVLSDPMDQKNAILSVHSGAGGTEACDWAAMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +KV ++ ++ G K ISG + +K E GVHR+ R+ A G+ T Sbjct: 116 AERHGFKVSLIDILPGEEAGIKSASLLISGSYAYGYLKAERGVHRLVRISPFNAQGKRQT 175 Query: 200 SAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTS 257 S A+V V+ I+++I D+RID R+ G GGQ VNTTDSAVRITH+PTGI +V Sbjct: 176 SFASVDVVAEVDESIEIEIKESDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVVVCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQG- 314 +E+SQ QN+ AMK+LR+RLY++E+ + E +K +IG G +IR+Y Sbjct: 236 NERSQIQNKATAMKILRSRLYELEKDKKRAEMERIYGQKGEIGWG---RQIRSYVLQPYK 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + D R +T ++E VL G +D I L Sbjct: 293 MVKDLRTGVTKTQVEEVLDGDLDSFIWAYL 322 >gi|332654908|ref|ZP_08420650.1| peptide chain release factor 2 [Ruminococcaceae bacterium D16] gi|332516251|gb|EGJ45859.1| peptide chain release factor 2 [Ruminococcaceae bacterium D16] Length = 373 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 101/345 (29%), Positives = 168/345 (48%), Gaps = 6/345 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++ + + K + I + +K+ + ++KQ DL + Sbjct: 26 DLESAERELDMLQAESAADGFWNNLEKAQKVQQRIKTLQTKVDKHHKRKQHWDDLMALCE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N + + E+ + E E L D + IL I G GG+EA Sbjct: 86 MGNEFED--ESLVPELEEGYAALEEEMEEARLQTLLTGEYDSSNVILTIHPGAGGTEAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+ + +++ D D+ G K I G + ++ E GVHR+ R Sbjct: 144 WAQMLYRMYTRWTERHGFTYQIMDYQDGDEAGIKSATIMIEGENAYGYLRGEHGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +A+ R TS A+V V+P+ +++V+I EDI + RASG+GGQHVN T SAVR+ Sbjct: 204 VSPFDANARRQTSFASVEVMPDLPEDVEVEIRPEDIEMQVYRASGAGGQHVNKTSSAVRL 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H PTGI+V + E+SQ QN+ MK+LRA+L +++ + A + S + +Q+ + + Sbjct: 264 IHKPTGIVVASQQERSQFQNKDNCMKMLRAKLVELQMQEKAEKISDLKGVQLK-IEWGSQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 IR+Y F + + D+R + V+ G +D IN LTA Sbjct: 323 IRSYVFMPYQLVKDNRTAYETSNIGAVMDGELDGFINAYLTAEAT 367 >gi|32033623|ref|ZP_00133934.1| COG1186: Protein chain release factor B [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207810|ref|YP_001053035.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae L20] gi|126096602|gb|ABN73430.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 301 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 159/306 (51%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 +++ I DQ ++ + L + + + + A E+ E ++ + + Sbjct: 2 VVNTIRTLDQGVEDVEGLIELAVEAEDEDTFNEAQ-----AEANELEEKLAKLEFQRMFS 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 GQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIR 223 I+G F ++ E+G+HR+ R +++ R HTS A V PE + D+R Sbjct: 117 VKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ + MK L+A+LY++E Sbjct: 177 IDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEM 236 Query: 283 KRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + E+ K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 MKKNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFI 293 Query: 341 NPLLTA 346 L A Sbjct: 294 EASLKA 299 >gi|299066996|emb|CBJ38191.1| peptide chain release factor RF-2; programmed frameshift [Ralstonia solanacearum CMR15] Length = 300 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ D+ +L + + D I + + + Sbjct: 2 VFALTKLDEDLTGGAELFELAREEGDDDTIEAVETDTAGMRAIVEDM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K EVL S+ D G K Sbjct: 57 PMDAANCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKTEVLEESEGDVAGIKSASL 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R +++G HTS +++ V PE + ++++ D+R+ Sbjct: 117 KVEGEYAFGFLRTETGVHRLVRKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITHIPTGI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 KRQAEADKLEASKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|301617313|ref|XP_002938091.1| PREDICTED: LOW QUALITY PROTEIN: peptide chain release factor 1, mitochondrial-like [Xenopus (Silurana) tropicalis] Length = 446 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 132/365 (36%), Positives = 203/365 (55%), Gaps = 11/365 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + L + + ++ D + ++ +S +I + + +Q+ ++L Sbjct: 74 IFQNYLQSLSKEHERLTEMLGQTSVREDDRRSASRRHSELSRLIGLLRDIKETEQDVREL 133 Query: 63 HTVIGDHNSDSE--IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG- 119 + N E + LA E +++ I +L ++ LLP + D +LE+ +G Sbjct: 134 ELMCAGKNXLEEGQMLALALEEKNTLKQNINKLRGKLLQALLPHEKYDMNDAVLEVTSGR 193 Query: 120 -TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 TGG F ++F MY+ YA + W E+L+ S + GG A ISG GV+ R+K+ Sbjct: 194 TTGGDICQQFTKEIFDMYQNYAYYKSWSFEILNYSPAEYGGLHHAAARISGEGVYKRLKY 253 Query: 179 ESGVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 E G HRVQR+P S R+ HT TV VLP+ E++V I +D+RIDT R+ G+GGQ Sbjct: 254 EGGTHRVQRIPEVGLSSRMQRIHTGTMTVIVLPQPDEVEVKIDSKDLRIDTFRSKGAGGQ 313 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVRI HIPTGI V E+SQ N+ +A+++LR RLY+ ++ ER + RK Sbjct: 314 HVNTTDSAVRIVHIPTGIAVECQQERSQIANKEKALRILRMRLYEQTVEQELLERRSARK 373 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMI 352 LQ+G+ +SERIRTYNF+Q R+TDHRI+ + ++ L G +DD+I L + + I Sbjct: 374 LQVGTRAQSERIRTYNFTQDRLTDHRIHYEVRNIKEFLNGEELLDDLIQKLQESADTEAI 433 Query: 353 GSASE 357 E Sbjct: 434 LELIE 438 >gi|183219678|ref|YP_001837674.1| peptide chain release factor 2 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909814|ref|YP_001961369.1| peptide chain release factor 2 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774490|gb|ABZ92791.1| Peptide chain release factor 2 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167778100|gb|ABZ96398.1| Peptide chain release factor 2 [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 375 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 106/340 (31%), Positives = 171/340 (50%), Gaps = 16/340 (4%) Query: 14 NRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +R + + ++ D +T++ + + ++ + DL + + Sbjct: 33 DRLLSLIEKANDPKLWDSPDQAKNVTQKRNELQMKLDPWLGLKKELLDFPDLIELTSEEM 92 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +S ++ L E + L DD K+ + I G GG+E+ + Sbjct: 93 GESGLKSLNDDFDRMFESF-----ENLQMLDALSGKDDGKAAFINIHPGAGGTESQDWAD 147 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + ++ E++ + G K I G F +K ESGVHR+ R+ Sbjct: 148 MLLRMYTRFAEQKGYRAELVDYQPGETAGIKNATLYIQGDHPFGYLKCESGVHRLVRISP 207 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V PE +I V+I +D+R+D R+SG+GGQHVNTTDSAVRITHI Sbjct: 208 FDSNKRRHTSFASVYVTPEVDDDIQVNIEEKDLRVDVYRSSGAGGQHVNTTDSAVRITHI 267 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTG++V E+SQ +NR AMK+L+ARLY++E+++ E + K I G +I Sbjct: 268 PTGVVVSCQMERSQIKNRDTAMKMLKARLYEMEKQKAEEENAKKAGEKRDIAWG---SQI 324 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + DHR + + V+ G ++D I L Sbjct: 325 RSYVFHPYNLVKDHRTDFETGNVHAVMDGDLEDFIIAYLK 364 >gi|329114780|ref|ZP_08243537.1| Peptide chain release factor 2 [Acetobacter pomorum DM001] gi|326695911|gb|EGE47595.1| Peptide chain release factor 2 [Acetobacter pomorum DM001] Length = 333 Score = 206 bits (524), Expect = 4e-51, Method: Composition-based stats. Identities = 105/326 (32%), Positives = 169/326 (51%), Gaps = 13/326 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 DA K+ E ++ I + + ++ +L + + D+++ + + Sbjct: 3 NDSDAAQKMMRERTLLANQIEGVEALETNVRDTSELIELA-EAEGDADLVAEGMATLRDL 61 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 +E + E L D C LE+ AG GG+EA + L RMY R+A +K Sbjct: 62 AEEAKRRET----ESLLSGEADSNDCYLEVNAGAGGTEAQDWTEMLLRMYTRWAEAHGYK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 V ++ SS+ + G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V Sbjct: 118 VTLMESSEGEQAGLKSATIQVSGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWV 177 Query: 207 LP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 P I+++I D+++DT RASG+GGQHVN TDSA+RITH+PTGI+V +++SQH+ Sbjct: 178 YPVIDDSIEIEINDADLKVDTFRASGAGGQHVNKTDSAIRITHMPTGIVVACQTDRSQHR 237 Query: 265 NRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRI 321 NR AM++LRARLY+ E ++ + K IG G +IR+Y + + + D R Sbjct: 238 NRATAMQMLRARLYEAELQKREAEAAAAEAAKTDIGWG---HQIRSYVLAPYQMVKDLRT 294 Query: 322 NLTLYKLEYVLQGYIDDIINPLLTAH 347 + + VL G +D + L Sbjct: 295 GVETGNPDAVLDGDLDAFMAAALAMR 320 >gi|313683376|ref|YP_004061114.1| bacterial peptide chain release factor 2 (brf-2) [Sulfuricurvum kujiense DSM 16994] gi|313156236|gb|ADR34914.1| bacterial peptide chain release factor 2 (bRF-2) [Sulfuricurvum kujiense DSM 16994] Length = 369 Score = 206 bits (524), Expect = 5e-51, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ R +EIE + + + +E + ++K S + DL+ + Sbjct: 27 QEISARLSEIEALENSDGFWNDAAAAGVIQKEKTQLERRLAKYSKTFNTLGDAVDLYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + I + A + + +L D + I+ I G GG+E+ Sbjct: 87 KEEGDEETIES-----LFADAGSLENNVKSMEVEVLLSGEHDSHNAIVTIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + VE+L ++ G K+ I G V+ +K E+G+HR+ Sbjct: 142 DWASMLLRMYTRWAERHDFTVEMLDYQAGEEAGIKDAALLIKGVNVYGYLKNENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS +V V PE +ID+DI DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPYDSAAKRHTSFTSVMVSPELDDDIDIDIEDRDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+N+ A K+L++RLY++E ++ K + G G Sbjct: 262 ITHIPTGIVVQCQNDRSQHKNKATAFKMLKSRLYELEMEKKQAAVDGIEKSENGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R + + +L G ID++I +L A Sbjct: 319 QIRSYVLAPYQQVKDTRSGIPYSNISNILDGDIDEMIEGVLIA 361 >gi|332673011|gb|AEE69828.1| peptide chain release factor RF2 [Helicobacter pylori 83] Length = 385 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 49 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 108 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 109 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 163 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 164 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 223 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 224 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 283 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 284 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 340 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 341 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 383 >gi|301064303|ref|ZP_07204737.1| peptide chain release factor 2 [delta proteobacterium NaphS2] gi|300441582|gb|EFK05913.1| peptide chain release factor 2 [delta proteobacterium NaphS2] Length = 326 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 113/331 (34%), Positives = 184/331 (55%), Gaps = 13/331 (3%) Query: 23 MSESPSVDAYIK----LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 MS++ + L +E +A+S I +K ++ L + + + + ++ Sbjct: 1 MSKADFWQRDQEEISRLNQERSALSEQIDTWEDLFRKTEDAALLAEMALEEKDKTTLSEV 60 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + + + + L DD ++ I+ I AG GG+EA +V LFRMY R Sbjct: 61 TRD-----VERLEREIKRLELRSLLGKPDDRRNAIVAINAGAGGTEAQDWVEMLFRMYTR 115 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A + KVEV+ D+ G K + T++G + +K E G+HR+ R+ +A+GR H Sbjct: 116 WAEAKGMKVEVIDFLAGDEAGIKNVDFTVTGPYAYGYLKSEHGIHRMVRISPFDATGRRH 175 Query: 199 TSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V+VLPE +I++++ D+RIDT RASG GGQHVN T SA+RITH+PT I+V Sbjct: 176 TSFASVSVLPEVDLDINIEVDENDLRIDTYRASGPGGQHVNKTSSAIRITHLPTKIVVQC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR- 315 +EKSQH+N+ AMKVL+++LY++E+ ++ ++ Q +IR+Y F+ R Sbjct: 236 QNEKSQHRNKDMAMKVLKSKLYELEKNKLEQKKQEIHDTQ-KDIAWGSQIRSYVFNPYRM 294 Query: 316 ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR NL ++ V+ G ID+ I+ L Sbjct: 295 VKDHRTNLDDGNVDKVMDGDIDEFIDAYLRM 325 >gi|17545749|ref|NP_519151.1| peptide chain release factor 2 protein [Ralstonia solanacearum GMI1000] gi|17428043|emb|CAD14732.1| probable peptide chain release factor 2 (rf-2) protein [Ralstonia solanacearum GMI1000] Length = 300 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ D+ +L + + D I + + + Sbjct: 2 VFALTKLDEDLTGGAELFELAREEGDDDTIEAVEADTAGMRAIVEDM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K EVL S+ D G K Sbjct: 57 PMDAANCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKTEVLEESEGDVAGIKSASL 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R +++G HTS +++ V PE + ++++ D+R+ Sbjct: 117 KVEGEYAFGFLRTETGVHRLVRKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITHIPTGI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 KRQAEADKLEASKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|34496516|ref|NP_900731.1| peptide chain release factor RF-2 [Chromobacterium violaceum ATCC 12472] gi|34102370|gb|AAQ58736.1| peptide chain release factor RF-2 [Chromobacterium violaceum ATCC 12472] Length = 299 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 105/302 (34%), Positives = 166/302 (54%), Gaps = 12/302 (3%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 + + + ++L + D I + A +E+ ++ + + D D Sbjct: 4 LDGINATIGDSRELFDMGKSEEDDDTILAVQ-----ADLEEVEAKVAQLEFRRMFHDPMD 58 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 +C ++I+AG GG+EA + G L RMY RYA + +KV+VL S+ + G I Sbjct: 59 PTNCFIDIQAGAGGTEAQDWAGMLLRMYTRYAERKGFKVDVLELSEGEVAGVTSATLKIE 118 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTM 227 G + ++ E GVHR+ RV +++ R HTS ++V V PE ++DI D+R DT Sbjct: 119 GEYAYGLLRTEVGVHRLVRVSPFDSNARRHTSFSSVFVYPEVDDSFEIDINPADVRTDTY 178 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH+NR A ++LRA+LY++E K+ Sbjct: 179 RASGAGGQHINKTDSAVRLTHIPTGIVVQCQNDRSQHRNRDEAWQMLRAKLYELELKKRN 238 Query: 287 NERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + + K +G G +IR+Y F Q RI D R + + ++ V+ G +D I L Sbjct: 239 EAKQALEDTKTDVGWG---HQIRSYVFDQSRIKDLRTSYEVGNIKGVMDGDLDGFIEASL 295 Query: 345 TA 346 Sbjct: 296 KH 297 >gi|317008842|gb|ADU79422.1| peptide chain release factor 2 [Helicobacter pylori India7] Length = 363 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 176/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + + +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDINKEKVRLNRLLETYQKTKNALDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|261417352|ref|YP_003251035.1| hypothetical protein Fisuc_2973 [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373808|gb|ACX76553.1| hypothetical protein Fisuc_2973 [Fibrobacter succinogenes subsp. succinogenes S85] Length = 368 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 93/339 (27%), Positives = 156/339 (46%), Gaps = 5/339 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +E + + K I + I + + Q DL + Sbjct: 25 DLEAKTEELYVLEKDSGDPNLWNDQEKAQSMMKKIGNLKGLIDSWKEVSQTCDDLAELY- 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + D E DL I +E + + + DD +C++ I G GG+E+ Sbjct: 84 EMSKDEESADLTATLESDIADLKSRVEA-MEFKKMLNGPDDACACLMSIHPGAGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LFRMY + K +V+ + +D G K +S + ++ E GVHR+ R Sbjct: 143 WALMLFRMYTHFFEREKMDFKVVDFQEAEDAGLKSATIEVSCENAYGLLRSEIGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + +A+ R HTS V + PE +++ D+ + ++R+DT R+SG+GGQ++N TDSAVR+T Sbjct: 203 ISPFDANARRHTSFTAVYLYPEHEDVEFDLDMSEVRVDTYRSSGAGGQYINKTDSAVRMT 262 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGIM +E+SQ QNR K+L+ + + R +R A R + + +I Sbjct: 263 HLPTGIMASCQTERSQIQNRETCYKMLKTMVAEHYRLEEEAKRDA-RMAEKKKVEWGSQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R+Y + + D R + VL G I I+ L Sbjct: 322 RSYVLQPYQLVKDLRTGVETSDTAGVLDGKIKPFIDAYL 360 >gi|333024883|ref|ZP_08452947.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071] gi|332744735|gb|EGJ75176.1| putative peptide chain release factor 2 [Streptomyces sp. Tu6071] Length = 373 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 13/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQDLHT 64 + ++ A +E + + D + + +S + + K + + L Sbjct: 27 DLDKMREDIASLEEQAAAPSLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFE 86 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + Q + L D + ++ IRA GG + Sbjct: 87 LAADEGDADTQEEAEQELAAVRKALDEM-----EVRTLLSGEYDSREAVVTIRAEAGGVD 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+ F L RMY R+A +K E+ +S ++ G K + + + E G HR Sbjct: 142 ASDFAERLQRMYLRWAERLGYKTELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSA Sbjct: 202 LVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G Sbjct: 262 VRLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQEKMNALKGD--GGNSW 319 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ++R+Y + + D R + E V G ID + + + + SA Sbjct: 320 GNQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQQEQQSA 373 >gi|295982099|pdb|2X9R|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release gi|295982158|pdb|2X9T|Y Chain Y, Structure Of The 70s Ribosome Bound To Release Factor 2 And A Substrate Analog Provides Insights Into Catalysis Of Peptide Release Length = 351 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+E R+ + + K+++E A + + + Q +L Sbjct: 13 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELME 72 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ +L + E + L +K+ IL I+ G GG+E Sbjct: 73 ELPAEEREALKPELEEAAKKLDELYHQTL---------LNFPHAEKNAILTIQPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VEV+ + + G + G + + E+GVHR Sbjct: 124 ACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHR 183 Query: 185 VQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +ASGR HTS A + E++V + E++RID MRASG GGQ VNTTDSA Sbjct: 184 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V + +SQ +N+ A+K+L+ARLY++ERK+ E A R ++ + Sbjct: 244 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVRPIEW 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR L + E VL G + D+I L + Sbjct: 303 GSQIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 351 >gi|165975783|ref|YP_001651376.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875884|gb|ABY68932.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 301 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 +++ I DQ ++ + L + + + + A E+ E ++ + + Sbjct: 2 VVNTIRALDQGVEDVEGLIELAVEAEDEDTFNEAQ-----AEANELEEKLAKLEFQRMFS 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 GQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIR 223 I+G F ++ E+G+HR+ R +++ R HTS A V PE + D+R Sbjct: 117 VKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVN T+SAVRITHIP+ I+V + +SQHQN+ + MK L+A+LY++E Sbjct: 177 IDVYRASGAGGQHVNKTESAVRITHIPSSIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEM 236 Query: 283 KRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + E+ K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 MKKNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFI 293 Query: 341 NPLLTA 346 L A Sbjct: 294 EASLKA 299 >gi|255037742|ref|YP_003088363.1| peptide chain release factor 2 [Dyadobacter fermentans DSM 18053] gi|254950498|gb|ACT95198.1| bacterial peptide chain release factor 2 (bRF- 2) [Dyadobacter fermentans DSM 18053] Length = 357 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 94/361 (26%), Positives = 170/361 (47%), Gaps = 23/361 (6%) Query: 4 LSHKQICDLKNRFA----------------EIELRMSESPSVDAYIKLTEEYAAISPIIS 47 ++ +Q+ DLK R ++E + + + + I + Sbjct: 1 MTAEQLKDLKARVEALGRYLDYANRKQQLGQLEQQTVQPEFWTDSARAEKVMKEIRGLKF 60 Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + Y++ + DL T+ + +D + E + ++ E+E + Sbjct: 61 WTNGYEELARLRDDLDTIWEFYEADEATEEEVDEEGKKLADKLDEIEFRKMM----GEEG 116 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D+ ++EI AG GG+E+ + L RMY +A +KV + D D G K + I Sbjct: 117 DELPAVIEINAGAGGTESQDWASMLMRMYIMWAEKNGYKVRQVDLQDGDVAGVKSVTLEI 176 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 G + +K E+GVHR+ R+ +++ R HTS +V V P I++++ + DI DT Sbjct: 177 DGEYAYGNLKSENGVHRLVRISPFDSNARRHTSFTSVYVYPLADDNIEIEVNMADITWDT 236 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+ G+GGQ+VN ++AVR+ H P+GI++ E+SQ N+ A+++L++RLY +E ++ Sbjct: 237 YRSGGAGGQNVNKVETAVRLHHKPSGIIIACQQERSQLMNKEVAIRLLKSRLYQIELEKR 296 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + R+ + + +IR+Y R+ DHR + E VL G I+ I L Sbjct: 297 NSARAEVEASK-RKIEWGSQIRSYVLDDRRVKDHRTDYQTSNTEAVLNGDINAFIKAYLM 355 Query: 346 A 346 Sbjct: 356 E 356 >gi|67459393|ref|YP_247017.1| peptide chain release factor 2 [Rickettsia felis URRWXCal2] gi|75536187|sp|Q4UKS1|RF2_RICFE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|67004926|gb|AAY61852.1| Peptide chain release factor RF-2 [Rickettsia felis URRWXCal2] Length = 368 Score = 206 bits (523), Expect = 5e-51, Method: Composition-based stats. Identities = 104/345 (30%), Positives = 177/345 (51%), Gaps = 10/345 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + R E+E S+ + S + K++ +++ K +D + Sbjct: 24 DVESSTERLNELEELTSDPSLWNDQANAQTLLREKSNLEEKLNAFNKLKSNLKDTLELEE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++++ L+QIE + + + L D +C LEI AG GG+E+ Sbjct: 84 MAEAENDLETLSQIEQDLKNLSV--IAAKFETECLFSGEADGNNCFLEINAGAGGTESHD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V + RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ R Sbjct: 142 WVSIMMRMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTEAGVHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRI Sbjct: 202 ISPFNAAGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 THIPT + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G Sbjct: 262 THIPTNTVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG--- 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G ++D ++ L + Sbjct: 319 HQIRSYVLQPYQMVKDLRTDYETSDTKGVLDGDLEDFVSASLAMN 363 >gi|163852399|ref|YP_001640442.1| peptide chain release factor 2 [Methylobacterium extorquens PA1] gi|218531158|ref|YP_002421974.1| peptide chain release factor 2 [Methylobacterium chloromethanicum CM4] gi|240139734|ref|YP_002964211.1| peptide chain release factor RF-2 [Methylobacterium extorquens AM1] gi|254562146|ref|YP_003069241.1| peptide chain release factor RF-2 [Methylobacterium extorquens DM4] gi|163664004|gb|ABY31371.1| peptide chain release factor 2 [Methylobacterium extorquens PA1] gi|218523461|gb|ACK84046.1| peptide chain release factor 2 [Methylobacterium chloromethanicum CM4] gi|240009708|gb|ACS40934.1| peptide chain release factor RF-2 [Methylobacterium extorquens AM1] gi|254269424|emb|CAX25390.1| peptide chain release factor RF-2 [Methylobacterium extorquens DM4] Length = 321 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 159/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ I ++ ++ L + + I + A K + + Sbjct: 1 MRERQELDEAVTAIKKLERDLEDGATLIELGEMEGDQASISEGE-----ATIKAVEKEAA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A RK+KVE++ +D Sbjct: 56 SRQVETLLSGEADGFDTYLEVHAGAGGTESQDWANMLQRMYARWAERRKFKVEIVEMTDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS A+V V P I+ Sbjct: 116 EEAGIKGATLLIKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASVWVYPVVDDRIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D RIDT R+SG+GGQHVNTTDSAVRITH PTGI+V E+SQH+NR A +L Sbjct: 176 IEIKESDCRIDTYRSSGAGGQHVNTTDSAVRITHNPTGIVVACQQERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ + +A K IG G +IR+Y + + D R + Sbjct: 236 RARLYEAELKKREEKANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGTQSTDPDE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDPFMEASLAQR 309 >gi|317181479|dbj|BAJ59263.1| peptide chain release factor 2 [Helicobacter pylori F57] Length = 381 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 45 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVHLNRLLETYQKTKNSLDESTELFELA 104 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 105 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 159 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 160 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 219 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 220 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 279 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ N K +IG G Sbjct: 280 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQNTAKNEEKSEIGWG---H 336 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 337 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 379 >gi|310829208|ref|YP_003961565.1| peptide chain release factor 2 [Eubacterium limosum KIST612] gi|308740942|gb|ADO38602.1| peptide chain release factor 2 [Eubacterium limosum KIST612] Length = 310 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 100/318 (31%), Positives = 160/318 (50%), Gaps = 13/318 (4%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + K YD+ K D+ + + E+ +L ++ + Sbjct: 1 MKELKILRQKKGEYDKLKDNLDDILVMFELIDEGEEMDELPDTIEAFGKELEK-----FK 55 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + I+ + G GG+E+ + L RMY R+A + +KV+ L D Sbjct: 56 LETLLSGEYDSNNAIISLHPGAGGTESQDWAEMLLRMYTRWAERKGFKVKSLDLQPGDVA 115 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDI 217 G K I G + +K E GVHR+ R+ ++SGR HTS A++ V PE + +++I Sbjct: 116 GIKSATLLIEGINAYGYLKTERGVHRLVRISPFDSSGRRHTSFASLDVTPEVDDSVEIEI 175 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +DIR+DT RASG+GGQHVN T SA+RITHIPTG++V +E+SQHQN+ AM +L+ + Sbjct: 176 NPDDIRVDTYRASGAGGQHVNKTSSAIRITHIPTGVVVQCQNERSQHQNKEVAMNMLKGK 235 Query: 277 LYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQ 333 L ++ + + QI G +IR+Y F + DHR N+ + ++ V+ Sbjct: 236 LVEIMEQEQKEKLDDVVGDYSQIAWG---SQIRSYVFHPYNMVKDHRTNVEVGNIQSVMD 292 Query: 334 GYIDDIINPLLTAHQAKM 351 G +D +N L A+ Sbjct: 293 GDLDQFMNAYLQQTAAQQ 310 >gi|224419024|ref|ZP_03657030.1| peptide chain release factor 2 [Helicobacter canadensis MIT 98-5491] gi|253827969|ref|ZP_04870854.1| peptide chain release factor 2 [Helicobacter canadensis MIT 98-5491] gi|313142536|ref|ZP_07804729.1| peptide chain release factor 2 [Helicobacter canadensis MIT 98-5491] gi|253511375|gb|EES90034.1| peptide chain release factor 2 [Helicobacter canadensis MIT 98-5491] gi|313131567|gb|EFR49184.1| peptide chain release factor 2 [Helicobacter canadensis MIT 98-5491] Length = 363 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 107/339 (31%), Positives = 184/339 (54%), Gaps = 10/339 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L++R EIE + + K E + ++ Y + D + + Sbjct: 28 QLQSRIEEIESLEQQKEFWEDSKKAGEYQKEKKRCLRQLEKYKEASLALSDAKELFELSS 87 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D E + E +E++I++ E E+ D + I I G GG+E+ + Sbjct: 88 DDEETLNELFNEAPMLEEQIKKAEIEVM----LSGELDSNNAIFTITPGAGGTESQDWAS 143 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY R+A +KVE+L + D+ G K+ I G + K E+G+HR+ R+ Sbjct: 144 MLYRMYLRWAERCGFKVELLDYQEGDEAGIKDASFIIKGENAYGYTKVENGIHRLVRISP 203 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ + HTS A+V V PE + ++I +D+RIDT RASG+GGQH+N T+SA+RITHI Sbjct: 204 FDSNAKRHTSFASVQVTPEIDDNISIEIEEKDLRIDTYRASGAGGQHINKTESAIRITHI 263 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTGI+V +++SQH+N+ A+K+L+++LY++E+++ + + + K +IG G +IR+ Sbjct: 264 PTGIVVQCQNDRSQHKNKATALKMLKSKLYELEQQKRNEQIANDDKSEIGWG---HQIRS 320 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y + ++ D R N+ +E +L G ID I+ +L Sbjct: 321 YVLAPYQQVKDLRSNIAYSNVEAILDGDIDSILEGVLIH 359 >gi|302521474|ref|ZP_07273816.1| peptide chain release factor 2 [Streptomyces sp. SPB78] gi|318056789|ref|ZP_07975512.1| peptide chain release factor 2 [Streptomyces sp. SA3_actG] gi|318081122|ref|ZP_07988454.1| peptide chain release factor 2 [Streptomyces sp. SA3_actF] gi|302430369|gb|EFL02185.1| peptide chain release factor 2 [Streptomyces sp. SPB78] Length = 371 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 13/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQDLHT 64 + ++ A +E + + D + + +S + + K + + L Sbjct: 25 DLDKMREDIASLEEQAAAPSLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + Q + L D + ++ IRA GG + Sbjct: 85 LAADEGDADTQEEAEQELAAVRKALDEM-----EVRTLLSGEYDSREAVVTIRAEAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+ F L RMY R+A +K E+ +S ++ G K + + + E G HR Sbjct: 140 ASDFAERLQRMYLRWAERLGYKTELYETSYAEEAGIKSTTFAVHVPYAYGTLSVEQGTHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSA Sbjct: 200 LVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G Sbjct: 260 VRLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLERRRQEEQEKMNALKGD--GGNSW 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ++R+Y + + D R + E V G ID + + + + SA Sbjct: 318 GNQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQQEQQSA 371 >gi|94969367|ref|YP_591415.1| peptide chain release factor 2 [Candidatus Koribacter versatilis Ellin345] gi|94551417|gb|ABF41341.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus Koribacter versatilis Ellin345] Length = 343 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 100/342 (29%), Positives = 170/342 (49%), Gaps = 18/342 (5%) Query: 17 AEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 AE+E ++ + ++ E + ++ ++ + + + Sbjct: 2 AEVEKEAADPNLWGNPENSQRVMRERKRLEDALATDKDLSRRTDDITAYFDLAKEGED-- 59 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 ++ ++R++ ++ L D S I+ I G GG+E+ + L Sbjct: 60 -----ITADLRREMDQLRDIVEKLETETLLSGDSDRLSAIVTIHPGAGGTESQDWAEMLL 114 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + ++ V ++ G K + T++G+ + + E GVHR+ R+ + Sbjct: 115 RMYLRWAERQGFETTVNDYQPGEEAGLKSVTITVAGQDAYGLLTSEIGVHRLVRISPFDQ 174 Query: 194 SGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + R HTS A+V V PE E +V + +DIR DT R+ G GGQHVNTTDSAVRITH PTG Sbjct: 175 AKRRHTSFASVFVSPEIDESIEVIVKPDDIRTDTYRSGGKGGQHVNTTDSAVRITHFPTG 234 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTY 309 I+V +E+SQH+NR RAMK+LR+++Y+ E ++ ++ + KL I D +IR+Y Sbjct: 235 IVVSCQNERSQHKNRERAMKILRSKIYEYELEKKRAASQKVEDSKLDI---DFGSQIRSY 291 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R + DHR + + VL G + I L +++ Sbjct: 292 VLHPYRMVKDHRTKFEVGDPDRVLDGDLKGFIRAYLLMRRSE 333 >gi|255547508|ref|XP_002514811.1| peptide chain release factor, putative [Ricinus communis] gi|223545862|gb|EEF47365.1| peptide chain release factor, putative [Ricinus communis] Length = 458 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 93/341 (27%), Positives = 161/341 (47%), Gaps = 5/341 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ +E + + + D E A++ + KI + + K + +D T++ Sbjct: 109 LQQLEQEVTNLESKAANTSFWDDRATAQETLLALTDVKDKIKLLTEFKTKVEDAETIVKL 168 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E +I KE+ + L D +S ++ I AG GG++A + Sbjct: 169 TEEMDSIDTGLLEEASSIIKELNKSLERFELTQLLSGPYDKESAVISITAGAGGTDAQDW 228 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + + GR + + E G HR+ R Sbjct: 229 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSAMIEVEGRYAYGYLSGEKGTHRIVRQ 288 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDI--PLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS + + V+P E +D+ P ED+ I RA G GGQ+VN ++AVRI Sbjct: 289 SPFNAKGLRQTSFSGIEVMPLLPEESMDVELPEEDLEISFSRAGGKGGQNVNKVETAVRI 348 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPTG+ V + E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 349 THIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAVEQRASEIKQIRGDAVK-AEWGQQ 407 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y F + + D R + V+ G ++ I L Sbjct: 408 IRNYVFHPYKLVKDVRTGYETSDVTSVMDGELEAFIKAYLK 448 >gi|116329128|ref|YP_798848.1| peptide chain release factor 2 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116330263|ref|YP_799981.1| peptide chain release factor 2 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122281974|sp|Q04V47|RF2_LEPBJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|122283090|sp|Q04YD0|RF2_LEPBL RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|116121872|gb|ABJ79915.1| Peptide chain release factor 2 [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123952|gb|ABJ75223.1| Peptide chain release factor 2 [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 367 Score = 206 bits (523), Expect = 6e-51, Method: Composition-based stats. Identities = 103/345 (29%), Positives = 170/345 (49%), Gaps = 16/345 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + K+R + + + + + +++ + ++ Q + DL + Sbjct: 29 LEQDKDRLKALNEKSEDPDLWNNPEEARIVSQKKNELEKKLTPWFTIQQDILDFPDLVEL 88 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D ++ I +L+ EK + L K+++D K L I G GG+E+ Sbjct: 89 TLDEKGENGIGELSMEYNRLQEKFEE-----LELLGALKNSEDLKPAFLNIHPGAGGTES 143 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY RY + ++ ++ D G K + + G F +K E+G+HR+ Sbjct: 144 QDWAEMLLRMYIRYFEKKGYQYSLIDIQAGDGAGIKNVTLHVVGDFAFGFLKGENGIHRL 203 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS +V V PE + I +DIR+D R+SG+GGQHVNTTDSAV Sbjct: 204 VRISPFDANKRRHTSFVSVHVSPEIDDEIDIKIEEKDIRVDVYRSSGAGGQHVNTTDSAV 263 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+P+GI+V +E+SQ +NR A K+L+ARLY++E+++ E + K I G Sbjct: 264 RITHLPSGIVVACQNERSQIKNRDTAFKMLKARLYEMEQEKAKEELEKKSGEKKDIAWG- 322 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + + V+ G I+ I L Sbjct: 323 --SQIRSYVFHPYNLVKDHRTDHETGNVAAVMDGDIEPFILAYLK 365 >gi|83593375|ref|YP_427127.1| peptide chain release factor 2 [Rhodospirillum rubrum ATCC 11170] gi|83576289|gb|ABC22840.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodospirillum rubrum ATCC 11170] Length = 322 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 111/317 (35%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ +++ + L + GD D+E + + + ++ R+ E Sbjct: 1 MRERTHLEQSVAGYRALEREVDDAATLIEL-GDAEDDAESIAEGERMLHSAAQKARKQEL 59 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+EA + L RMY R+A KVE L S Sbjct: 60 ----ESLLSGEADHNDAYLEVHAGAGGTEAQDWALILLRMYTRWAEAHGHKVEFLEESAG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ ++S R HTS +++ V P I+ Sbjct: 116 EEAGIKSATIKIVGHNAYGWLKTESGVHRLVRISPFDSSARRHTSFSSIWVYPVVDDTIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI +D RIDT RASG+GGQHVN T+SAVRITHIPTGI+V SE+SQHQN+ +L Sbjct: 176 IDIEEKDCRIDTYRASGAGGQHVNRTESAVRITHIPTGIVVQCQSERSQHQNKDYCWSML 235 Query: 274 RARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E ++ + + K IG G +IR+Y + I D R N+ + Sbjct: 236 RARLYEHELQKREEKTKALEDTKTDIGWG---HQIRSYVLQPYQMIKDTRTNVETSDTQG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L A Sbjct: 293 VLNGDLDQFMAASLAAR 309 >gi|153956213|ref|YP_001396978.1| peptide chain release factor 2 [Clostridium kluyveri DSM 555] gi|219856538|ref|YP_002473660.1| hypothetical protein CKR_3195 [Clostridium kluyveri NBRC 12016] gi|146349071|gb|EDK35607.1| PrfB [Clostridium kluyveri DSM 555] gi|219570262|dbj|BAH08246.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 328 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 100/328 (30%), Positives = 170/328 (51%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + + + + +++ YD +D ++ + + ++ E Sbjct: 1 MQEPNFWNDIDNAQKIASEEKNLEGRLNRYDLLSHNIEDARILLEIIKEEED--SMSFQE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V+ K+I +L D + IL + G GG++A + L RMY R+A Sbjct: 59 VMKDIKDIEFQVEIFRTEILLCGEYDKNNAILNLHVGVGGTDAQDWTEMLLRMYIRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +KV ++ + +D G K + +I G + +K E G+HR+ R+ A+G+ TS A Sbjct: 119 MGYKVNIIDMLEAEDAGIKSVSLSIIGEFAYGYLKSEKGIHRLVRISPFNANGKRQTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V VLPE + D++I ED+++DT RA G+GGQHVN T+SAVRITHIPTGI+V +E+ Sbjct: 179 SVEVLPELTGDQDIEIRSEDLKVDTFRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH N+ +A+K+L+A+L +++ +R +R + ++ +IR+Y F + DH Sbjct: 239 SQHYNKEQALKILKAKLVELK-ERAHKDRIEDLTGELKDMGWGSQIRSYVFHPYNLVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R + + V+ G ID+ I L Sbjct: 298 RTGVESSNVSSVMDGDIDNFIKGYLKQQ 325 >gi|148263843|ref|YP_001230549.1| peptide chain release factor 2 [Geobacter uraniireducens Rf4] gi|146397343|gb|ABQ25976.1| bacterial peptide chain release factor 2 (bRF-2) [Geobacter uraniireducens Rf4] Length = 317 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 98/314 (31%), Positives = 170/314 (54%), Gaps = 13/314 (4%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 +E + +S ++++ + + L + + ++ + ++ + E+ + + Sbjct: 3 KERTVMEKTLSAWDRFNRQVDDIRVLIELGSEAEDEATLAEV-----HGLNDELEKGVSH 57 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 + + D SC + I +G GG+E+ + L RMY RY + WK E+ D Sbjct: 58 AEFQKMLSGPHDASSCFVSINSGAGGTESQDWAEMLLRMYLRYCERKGWKTEITDYQAGD 117 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDV 215 + G K + ++SG + +K E+G+HR+ R+ +++ R HTS A+V V PE +I+V Sbjct: 118 EAGVKGVTFSVSGEYGYGYLKAEAGIHRLVRISPFDSNARRHTSFASVFVFPEIEDDIEV 177 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 + D+R+DT R+SG+GGQHVNTTDSA+RITHIP+GI+V +E+SQH N+ AM+VLR Sbjct: 178 KVNEADLRVDTFRSSGAGGQHVNTTDSAIRITHIPSGIVVACQTERSQHMNKATAMRVLR 237 Query: 275 ARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYV 331 A+LY+ E + ++ + K +IG G +IR+Y + D R + + V Sbjct: 238 AKLYERELQERESQAAEIGGEKKEIGWG---SQIRSYVLHPYKMVKDLRTGVESGNPDAV 294 Query: 332 LQGYIDDIINPLLT 345 L G +++ I L Sbjct: 295 LDGDLEEFIVAFLM 308 >gi|325973695|ref|YP_004250759.1| peptide chain release factor 1 [Mycoplasma suis str. Illinois] gi|325990139|ref|YP_004249838.1| peptide chain release factor 1 [Mycoplasma suis KI3806] gi|323575224|emb|CBZ40889.1| Peptide chain release factor 1 [Mycoplasma suis] gi|323652297|gb|ADX98379.1| peptide chain release factor 1 [Mycoplasma suis str. Illinois] Length = 359 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 153/360 (42%), Positives = 221/360 (61%), Gaps = 11/360 (3%) Query: 3 FLSHKQICDL------KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKK 56 + +K+I D K + E E +S+S ++ I L +E + +I K S Y + Sbjct: 1 MIYNKKIYDFLTSVSEKQKILE-EKLLSDSANIKN-IALQKEISKNRELIEKFSSYKKYI 58 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + ++ I D+E + L + E +EK+I +LE E+ L P + D K+ ++E+ Sbjct: 59 SDYEECKESIS-KGKDAEFKSLLEEECRLLEKKIEQLEQELKSDLFPSNKYDGKNIVIEM 117 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 + GG EAA+FV +LF Y++YA KWK+ V+ +++ G I T+SG V+S+M Sbjct: 118 HSAAGGEEAAIFVSNLFDSYKKYANENKWKLNVVDLRESER-GLAFITFTLSGSKVYSKM 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ESGVHRVQRVP TE+ GRVHTS TV+VLPEA EI++ + DIRID RASG+GGQH Sbjct: 177 KYESGVHRVQRVPETESKGRVHTSTITVSVLPEADEIEIQLDPSDIRIDVYRASGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SAVR+ HIPT IMV E+SQ N+ A K+L+ +L++ E+K E +N K Sbjct: 237 VNKTESAVRLVHIPTNIMVACQQERSQMLNKEIAFKILKTKLWEREKKLQKEEFFSNLKQ 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 QIG G+R+E+IRTYN+ Q RITDHRI LT+ L V++G+ + I N L Q + S Sbjct: 297 QIGKGERAEKIRTYNYPQNRITDHRILLTINNLTSVMEGHFEQIHNQLSLREQEDWLNSL 356 >gi|296089769|emb|CBI39588.3| unnamed protein product [Vitis vinifera] Length = 472 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 169/354 (47%), Gaps = 19/354 (5%) Query: 4 LSHKQI--CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 L K++ L R + ++++ D + K++ E+ + + + +Q+ E Sbjct: 116 LIKKRLQWKKLVVRLDVLSAQLNKPDLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLE 175 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D+ + + N + + + L D SC +E++A Sbjct: 176 HIDMVKLAREENDPELESESLKALLGMRRNSKE-----KELEALLAGDHDSCSCYIEVQA 230 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+E+ + + +MY+ +A R + V V+ + G K + G F K Sbjct: 231 GAGGTESMDWAAMVMQMYKMWAQRRGYGVTVVDEMPGETAGIKRATIKVDGEYSFGYAKA 290 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E GVHR+ R+ ++ R HTS A VAV+P A V I D+RI+ RA G+GGQH Sbjct: 291 EVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDASSHVQINESDLRIERFRAGGAGGQH 350 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SAVRI HIPTG+ +E+SQHQN+ AM VL++RL +E R A + + + Sbjct: 351 VNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEISRQAQINAQHTQS 410 Query: 296 --QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I G+ +IRTY R + D R N + + VL+G +D I L+A Sbjct: 411 LTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 461 >gi|219559147|ref|ZP_03538223.1| peptide chain release factor 2 [Mycobacterium tuberculosis T17] gi|260206441|ref|ZP_05773932.1| peptide chain release factor 2 [Mycobacterium tuberculosis K85] gi|308369955|ref|ZP_07419655.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu002] gi|308371233|ref|ZP_07424282.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu003] gi|308372424|ref|ZP_07428636.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu004] gi|308373628|ref|ZP_07433110.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu005] gi|308374772|ref|ZP_07437352.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu006] gi|308375989|ref|ZP_07668163.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu007] gi|308377222|ref|ZP_07668462.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu008] gi|308378190|ref|ZP_07481848.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu009] gi|308379411|ref|ZP_07486192.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu010] gi|308380571|ref|ZP_07490411.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu011] gi|308406052|ref|ZP_07494953.2| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu012] gi|54039054|sp|P66027|RF2_MYCBO RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|54041597|sp|P66026|RF2_MYCTU RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|308325955|gb|EFP14806.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu002] gi|308329480|gb|EFP18331.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu003] gi|308333326|gb|EFP22177.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu004] gi|308336980|gb|EFP25831.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu005] gi|308340794|gb|EFP29645.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu006] gi|308344662|gb|EFP33513.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu007] gi|308348612|gb|EFP37463.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu008] gi|308353337|gb|EFP42188.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu009] gi|308357171|gb|EFP46022.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu010] gi|308361122|gb|EFP49973.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu011] gi|308364657|gb|EFP53508.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis SUMu012] gi|323718336|gb|EGB27514.1| peptide chain release factor 2 prfB [Mycobacterium tuberculosis CDC1551A] Length = 371 Score = 205 bits (522), Expect = 6e-51, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 162/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + +S ++ ++ ++ DL + Sbjct: 24 DVEGLRSRIEKLEHEASDPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI-RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + E + R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEAGAAAADAVAEADAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIP+GI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 264 LTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERKRLEERAELDAL-KADGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G +D + + + Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDLDGFLEAGIRWRNRR 368 >gi|297620623|ref|YP_003708760.1| Peptide chain release factor 2 [Waddlia chondrophila WSU 86-1044] gi|297375924|gb|ADI37754.1| Peptide chain release factor 2 [Waddlia chondrophila WSU 86-1044] Length = 326 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 108/329 (32%), Positives = 165/329 (50%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + D + I+ + + K+ +D+ + + + LA + Sbjct: 1 MEAAGFWDDPDAAQQVITEINSLKQWTIPCKELKRRLEDVKELQPEAEEAGDEGLLADLN 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E + D+K+C L I AG GG+EA +V L RMY+R+ Sbjct: 61 QELFRIENELGEL--EIRRMLSGELDNKNCYLSINAGAGGTEACDWVEMLSRMYQRWCDK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 RKWK EV+ + G K + ++G F K E GVHR+ R+ ++ R HTS A Sbjct: 119 RKWKCEVVDMVPGEVAGTKSVTLKMTGNFAFGYSKAEKGVHRLVRISPFDSGSRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V PE +I ++I +DIRIDT RASG+GGQHVN TDSAVR+THIPTG++V S++ Sbjct: 179 SVDVTPEITDDIQIEINPDDIRIDTFRASGAGGQHVNVTDSAVRMTHIPTGVVVSCQSQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQG-RIT 317 SQ+QN+ K+L+++LY++E + K+ IG G +IR Y F + Sbjct: 239 SQNQNKEACFKILKSKLYEMEVMEREKKIKELGGEKMDIGWG---SQIRNYVFHPYSLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + ++ V+ G +D +N L Sbjct: 296 DTRTKVESANVQAVMDGSLDLFVNAYLKE 324 >gi|315304796|ref|ZP_07874958.1| peptide chain release factor 1 [Listeria ivanovii FSL F6-596] gi|313626836|gb|EFR95807.1| peptide chain release factor 1 [Listeria ivanovii FSL F6-596] Length = 229 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 122/227 (53%), Positives = 170/227 (74%), Gaps = 1/227 (0%) Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 +FRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G HRVQRVP T Sbjct: 1 MFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAHRVQRVPET 60 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 E+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SAVR+THIPT Sbjct: 61 ESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSAVRLTHIPT 120 Query: 252 GIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK +G+GDRSERIRTYN Sbjct: 121 GIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKSAVGTGDRSERIRTYN 180 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + ++ Sbjct: 181 YPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHLND 227 >gi|118475480|ref|YP_892510.1| peptide chain release factor 2 [Campylobacter fetus subsp. fetus 82-40] gi|166223624|sp|A0RQM7|RF2_CAMFF RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|118414706|gb|ABK83126.1| peptide chain release factor 2 [Campylobacter fetus subsp. fetus 82-40] Length = 369 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 106/348 (30%), Positives = 182/348 (52%), Gaps = 8/348 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D++ R EIE + + K +E + I + + + K D + + Sbjct: 27 QDIEIRLKEIEDIENRPEFWNDIKKASEIGKEKTKISNMLCKFKNVKSAISDAYELYELA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N++ + + + + + + ++ DD K+ I+ I G GG+E+ + Sbjct: 87 NAEDD--EQTINSLFEDAQNLENKITNLEISMMLSGEDDSKNAIVSIHPGAGGTESNDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY R+ +KVE L + D+ G K++ + G + +K E+G+HR+ R Sbjct: 145 SMLYRMYLRFCEREGFKVETLDFQEGDEAGLKDVSFIVKGENAYGYLKAENGIHRLVRTS 204 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS ++V V PE +I ++I +D+R+D RASG+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFSSVMVSPEVDDDIAIEIEEKDLRLDYYRASGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+V +++SQH+N+ AMK+L++RLY+ E + +A K +IG G +IR Sbjct: 265 IPTGIVVQCQNDRSQHKNKATAMKMLKSRLYEFELMKQQEANNAIEKSEIGWG---HQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +Y F ++ D R + + +L G I II +L + ++ Sbjct: 322 SYVLFPYQQVKDTRSGEAYSQTDAILDGDIKKIIESVLISQKSSANKE 369 >gi|330444184|ref|YP_004377170.1| peptide chain release factor 2 [Chlamydophila pecorum E58] gi|328807294|gb|AEB41467.1| Peptide chain release factor 2 [Chlamydophila pecorum E58] Length = 344 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 109/345 (31%), Positives = 178/345 (51%), Gaps = 11/345 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + E+E + ++ + +K + I+ + ++S Y + +++ + + + D Sbjct: 1 MEGKEATLRELEKQSAQENFWEDVVKAGKISEQIAALKRQLSEYSELQKKIETIEFFLND 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + ++ E+ L D SC L I AG GG+E+ + Sbjct: 61 NEACADPE--VGKELEKEFAFCESCLAVWETQRLLSGEVDKNSCFLSINAGAGGTESCDW 118 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V LFRMY R+A+ WKV+V+ D + G K I ++G + K ESGVHR+ R+ Sbjct: 119 VEMLFRMYSRWASRHHWKVDVIDRLDGEVAGIKHITLKLTGEYAYGYAKAESGVHRLVRI 178 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V PE +I ++I D+RIDT R+SG+GGQHVN T+SAVRIT Sbjct: 179 SPFDSNAKRHTSFASVDVFPEVDDQIQIEILPNDLRIDTFRSSGAGGQHVNVTESAVRIT 238 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY--DVERKRMANERSANRKLQIGSGDRSE 304 H+PTGI+V +E+SQ QNR MKVLRARLY +++ + K +I G Sbjct: 239 HLPTGIVVSCQNERSQLQNRESCMKVLRARLYQRELQERLERRLLERKDKKEIAWG---S 295 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 +IR Y F + D R + ++ ++ G +D+ I L + Sbjct: 296 QIRNYVFQPYTLVKDVRTGYEVGNIQAMMDGELLDEFIKVYLAEY 340 >gi|146415684|ref|XP_001483812.1| hypothetical protein PGUG_04541 [Meyerozyma guilliermondii ATCC 6260] Length = 421 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 129/352 (36%), Positives = 197/352 (55%), Gaps = 14/352 (3%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 ++ +E +++ + Y+ +S I+ Y Q + L +I + +D Sbjct: 69 KEYSVLEEAITKGNF---DQETNVRYSNLSVILDNYHRYVQDMENVAALKEMIAEE-TDP 124 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E++ A E+ + ++ + LLP + DK+ ILE+R G GGSEAALF GDL Sbjct: 125 EMQQEAIKELQHLVPNVQRSVKVLQARLLPPVSHSDKATILELRPGVGGSEAALFCGDLV 184 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY +A +KWK + + G E++ +I G ++ ++ ESGVHRVQR+PATE Sbjct: 185 NMYINFANNKKWKWTKILEGLTNSGSLNEVIMSIDVPGSYNLLRHESGVHRVQRIPATET 244 Query: 194 SGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 GR+HTS A V VLP+ + + ++RIDTMRA G GGQHVNTTDSAVR Sbjct: 245 KGRIHTSTAAVVVLPKISEGTESSLKDDERQFAPGEVRIDTMRAGGKGGQHVNTTDSAVR 304 Query: 246 ITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI V + +SQ +N+ +A +LRARL +ER + E+ R Q+ + DRS+ Sbjct: 305 LTHIPTGIQVQQQDERSQPKNKAKAFSILRARLAALERDKEIAEQRKLRTDQVTTTDRSD 364 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSA 355 +IRTYNF Q R+TDHR +L+ ++ +QG +++II + + + Sbjct: 365 KIRTYNFPQNRVTDHRCGFSLHDIDGCMQGYKLEEIIEHVEEKELEDRLEAL 416 >gi|308176991|ref|YP_003916397.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117] gi|307744454|emb|CBT75426.1| peptide chain release factor 2 [Arthrobacter arilaitensis Re117] Length = 371 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 101/349 (28%), Positives = 173/349 (49%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + +K A + D + +S S++ + + DL + Sbjct: 25 DVDQIKADIAVLSEEAGVPNLWDDPAAAQIVTSKLSHRQSELERLTRLRTRIDDLEVLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D++ D A+ E+++I+K + +LE D + ++ IR+G GG +A Sbjct: 85 LAELEDDADTLDEAEKELVSIQKSLADLEIVTL----LSGEFDSRGAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A R +K V+ +S ++ G K I F + E+G HR+ Sbjct: 141 ADFAEMLLRMYLRWAERRGYKATVMDTSYAEEAGLKSATFEIDAPYAFGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++IP +IR+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLIEQTDTIEIPESEIRVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ +EKSQ QNR A++VL++RL +++++ ++ + Sbjct: 261 RMTHIPTGVVVSMQNEKSQIQNRAAALRVLQSRLLLLKKEQEDAQKKEFAGDVKAT--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +++R+Y + + + D R + + VL G IDD I+ + + Sbjct: 319 DQMRSYVLNPYQMVKDLRTEHEVGNTQAVLDGEIDDFIDAGIRWRAGER 367 >gi|303249514|ref|ZP_07335721.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251860|ref|ZP_07533761.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256355|ref|ZP_07538138.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302651588|gb|EFL81737.1| peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860552|gb|EFM92564.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865181|gb|EFM97081.1| Peptide chain release factor 2 [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 301 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 +++ I DQ ++ + L + + + + E+ E ++ + + Sbjct: 2 VVNTIRTLDQGVEDVEGLIELAVEAEDEDTFNEAQVE-----ANELEEKLAKLEFQRMFS 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 GQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIR 223 I+G F ++ E+G+HR+ R +++ R HTS A V PE + D+R Sbjct: 117 VKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINLADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ + MK L+A+LY++E Sbjct: 177 IDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEM 236 Query: 283 KRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + E+ K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 MKKNAEKQVMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFI 293 Query: 341 NPLLTA 346 L A Sbjct: 294 EASLKA 299 >gi|33239657|ref|NP_874599.1| peptide chain release factor 2 [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33237182|gb|AAP99251.1| Protein chain release factor B [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 356 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 86/332 (25%), Positives = 161/332 (48%), Gaps = 6/332 (1%) Query: 18 EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 ++E ++ + K ++ + + +++ +D + + + + Sbjct: 17 DLEQIAAQPDFWNDQQKARKQMRQLDEVKDQLTKLANWNAAIEDAKVSLELYELEPDNEM 76 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + + ++ + + + L D + +L I AG GG++A + L RMY Sbjct: 77 IEEAQIGLCQLKTEL--DLWELERLLSGPYDKEGAVLAINAGAGGTDAQDWAQMLLRMYM 134 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+A KV + S+ ++ G K I GR + ++ E G HR+ R+ A+G+ Sbjct: 135 RWAESHGMKVILSELSEGEEAGIKSATIEIEGRYAYGYLQNEKGTHRLVRISPFNANGKR 194 Query: 198 HTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 TS A + V+P+ ++ ++IP +D+ + T R+ G+GGQ+VN ++AVRI HIPTG+ V Sbjct: 195 QTSFAGIEVMPQLEEDVHLEIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVR 254 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 + E+SQ QN+ +AM +L+A+L + +++ A E + R I +IR Y F + Sbjct: 255 CTQERSQLQNKEKAMALLKAKLMIIAQEQRAAEIADIR-GDIVEAAWGNQIRNYVFHPYQ 313 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R +E V+ G +D I LL Sbjct: 314 MVKDLRSGTESNDVESVMNGDLDLFIQSLLLQ 345 >gi|62184808|ref|YP_219593.1| peptide chain release factor 2 [Chlamydophila abortus S26/3] gi|81313013|sp|Q5L6U9|RF2_CHLAB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|62147875|emb|CAH63621.1| putative peptide chain release factor 2 [Chlamydophila abortus S26/3] Length = 368 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 113/346 (32%), Positives = 171/346 (49%), Gaps = 11/346 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + +E + + + I + +I+ Y++ K ++L + Sbjct: 24 DLEGKRQELSILEEQTLKEDFWQDVTSAGKVSERIVSLKRQIAHYEEFKVRVENLAFFLN 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D D + ++ + +E L D C L I AG GG+E+ Sbjct: 84 D--GDVSADPELREDLEKEFTICEHILSEWETQRLLSGEVDKNPCFLTINAGAGGTESCD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V LFRMY R+AA +WKVEV+ + D G K + SG + K E GVHR+ R Sbjct: 142 WVEMLFRMYCRWAAQHQWKVEVIDRQEGDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P EI++DI D+RIDT R+SG+GGQHVN TDSAVRI Sbjct: 202 ISPFDSNAKRHTSFASVDVYPEIDDEIEIDIRPNDLRIDTFRSSGAGGQHVNVTDSAVRI 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 THIPTGIMV E+SQ QNR MK+LRAR+Y + ++ +RK +I G Sbjct: 262 THIPTGIMVSCQRERSQIQNRESCMKMLRARMYQQILQERLEKQLLDRKNKKEIAWG--- 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 +IR Y F + D R ++ ++ G +DD + L + Sbjct: 319 SQIRNYVFQPYTLVKDVRTGHETGNVQAMMDGELLDDFVKAYLAEY 364 >gi|261212226|ref|ZP_05926512.1| peptide chain release factor 2 [Vibrio sp. RC341] gi|260838834|gb|EEX65485.1| peptide chain release factor 2 [Vibrio sp. RC341] Length = 300 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I D+ + + L + + D E D E+ +E ++ +LE + + Sbjct: 2 VDTIDQLDRGVDDVEGLLELAIEAE-DQETFDEIGPELDELEVKLEQLE----FRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C L+++AG+GG+EA + L RMY R+A + +K EV+ S+ D G K Sbjct: 57 DHDSSDCYLDLQAGSGGTEAQDWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATV 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++ GR HTS A+ + PE E D++I D+RI Sbjct: 117 RIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E + Sbjct: 177 DVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQ 236 Query: 284 RMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ AN K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 KQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|58584553|ref|YP_198126.1| protein chain release factor B [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58418869|gb|AAW70884.1| Protein chain release factor B [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 336 Score = 205 bits (522), Expect = 7e-51, Method: Composition-based stats. Identities = 100/337 (29%), Positives = 171/337 (50%), Gaps = 11/337 (3%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R ++E + ++ K E S I + + + + + + D +++ +++ Sbjct: 2 RLEKLESQTADGNLWQDNQKAQEVLKEYSKIKNDVESFSKLESDYNDAISLMKSAIDEND 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + EV ++ +L L D D+ C LEI +G GG+E+ + L R Sbjct: 62 --EEFFSEVENELVKLEKLIKRKETDFLFTDEADNNDCFLEIHSGAGGTESNDWAEMLMR 119 Query: 135 MYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY R+A +KVEV+ + D G K + I G + K ESG+HR+ R+ +A Sbjct: 120 MYIRWAEIYHNFKVEVVEKLEGDSIGIKSAIIKIIGEKAYGWAKSESGIHRLVRISPFDA 179 Query: 194 SGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + + HTS ++ V P + + ++IDT RASG+GGQHVN T+SAVR+THIPTG Sbjct: 180 NSKRHTSFVSIGVTPVIEDSIDIAVDEGTLKIDTYRASGAGGQHVNKTESAVRVTHIPTG 239 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTY 309 ++V + +SQHQN+ A+K+L+ RLY ++ ++ + + +K IG G+ +IR+Y Sbjct: 240 VIVQCQNNRSQHQNKNEALKLLKGRLYQIKLEKKEQKMAEEYGKKCGIGWGN---QIRSY 296 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R + + + G ID I +LT Sbjct: 297 VMHPYQMVKDLRTGYEVGNINSIFDGNIDCFIVNVLT 333 >gi|206901574|ref|YP_002251123.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12] gi|206740677|gb|ACI19735.1| peptide chain release factor 2 [Dictyoglomus thermophilum H-6-12] Length = 330 Score = 205 bits (522), Expect = 8e-51, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 179/328 (54%), Gaps = 7/328 (2%) Query: 29 VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEK 88 D K+ + + +I +++ K + ++L E ++ + ++ +E Sbjct: 8 WDDAEKVKPILTKYNKLQKEIENWEKLKADIKELSEWKDLLEEGDEYKEEFEKKLKEVEN 67 Query: 89 EIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVE 148 ++E E ++ +D D+ + IL + AGTGG++A + L RMY R+A + ++V+ Sbjct: 68 SLKEFEI----EMILQDPHDEANAILSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVK 123 Query: 149 VLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP 208 +L S ++ G K I G + +K E GVHR+ R+ +A+ R HTS A V V+P Sbjct: 124 ILDISPGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIP 183 Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E E ++I ED++I+T RA G+GGQHVN +SAVRITHIPTGI+V +E+SQH N+ Sbjct: 184 ELPESTIEIRPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQCQNERSQHANKE 243 Query: 268 RAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLY 326 A++VL+ARL ++E K+ + ++ K ++ +IR+Y F + DHR L + Sbjct: 244 MALRVLKARLEELEEKKRREKIASL-KGEVQEISWGNQIRSYVFHPYTLVKDHRTGLEIG 302 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++ V+ G ID I L + K + Sbjct: 303 NVQAVIDGEIDPFIEAYLYSEFKKKSKA 330 >gi|322514782|ref|ZP_08067805.1| peptide chain release factor RF2 [Actinobacillus ureae ATCC 25976] gi|322119244|gb|EFX91374.1| peptide chain release factor RF2 [Actinobacillus ureae ATCC 25976] Length = 301 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 101/306 (33%), Positives = 158/306 (51%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 +++ I Q ++ + L + + + + A E+ E ++ + + Sbjct: 2 VVNTIRALAQGVEDVEGLIELAVEAEDEDTFNEAQ-----AEANELEEKLAKLEFQRMFS 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 GQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIR 223 I+G F ++ E+G+HR+ R +++ R HTS A V PE + D+R Sbjct: 117 VKITGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEIDDDIDIEINPADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ + MK L+A+LY++E Sbjct: 177 IDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQCMKQLKAKLYEMEM 236 Query: 283 KRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + E+ K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 MKKNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFI 293 Query: 341 NPLLTA 346 L A Sbjct: 294 EASLKA 299 >gi|262037715|ref|ZP_06011157.1| peptide chain release factor 2 [Leptotrichia goodfellowii F0264] gi|261748187|gb|EEY35584.1| peptide chain release factor 2 [Leptotrichia goodfellowii F0264] Length = 348 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 178/344 (51%), Gaps = 8/344 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + IE + +E + E ++ + I Y++ +D+ +I Sbjct: 9 DLDSLNLKIERIEKKTAEPDFWNR-ENSQETLKELNILKKLIEEYEKISGMNEDVSVMIE 67 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + + E LL + D + IL I AG GG+EA Sbjct: 68 FIEAGDDSFEKELDDKIDTVTEE---IQNFKTKLLLDEKYDSNNAILTINAGAGGTEACD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY+R++ + +KVEVL S ++ G K I I G + +K E GVHR+ R Sbjct: 125 WTEMLYRMYDRWSNRKDFKVEVLDSLSGEEAGIKSITLNIKGSYAYGYLKGEKGVHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++G+ HTS V V+PE + +V+I ED+++DT RASG+GGQHVNTTDSAVRI Sbjct: 185 ISPFDSNGKRHTSFTAVNVVPEIDDDVEVNIRPEDLKVDTYRASGAGGQHVNTTDSAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPT +V E+SQ +N+ AMK+L++RL+++E ++ E + + + + Sbjct: 245 THIPTNTVVTCQKERSQLKNKETAMKILKSRLFEIELEKREKEMENIKGTE-SKIEWGSQ 303 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y F + DHR ++ V+ G ID IN L ++ Sbjct: 304 IRSYVFQPYKMVKDHRTKAEEGNVDKVMDGDIDSFINEYLKFYK 347 >gi|184200580|ref|YP_001854787.1| peptide chain release factor 2 [Kocuria rhizophila DC2201] gi|183580810|dbj|BAG29281.1| peptide chain release factor 2 [Kocuria rhizophila DC2201] Length = 372 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 95/346 (27%), Positives = 159/346 (45%), Gaps = 13/346 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDH 69 L E+E + + D + + + +S SK+ + + DL + + + Sbjct: 29 LLKEITELEQQAAAPDLWDNPDEAQKVTSQLSHKQSKVDRLRKIESRIDDLEVMVELAED 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D E RD + E+ +I+K + ELE + D++ ++ IR+G GG +AA F Sbjct: 89 EDDQETRDASATELTSIQKALSELEIQTL----LAGEYDEREAVVTIRSGAGGVDAADFA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + +VL +S ++ G K + F + E+G HR+ R+ Sbjct: 145 EILMRMYLRWAERHGYPTKVLDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V V+P ++ V+IP ++++D R+SG GGQ VNTTDSAVR+TH Sbjct: 205 PFDNQGRRQTSFAAVEVIPLIESDDTVEIPETELKVDVFRSSGPGGQSVNTTDSAVRMTH 264 Query: 249 IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSERI 306 IPTGI+V+ +++++ L E A +K G +++ Sbjct: 265 IPTGIVVSMQ---NEKSQIQNRAAALRVLQSRLLLLRQEEADAKKKEMAGDVKASWGDQM 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+Y + + + D R N V G ID I+ + Sbjct: 322 RSYVLNPYQMVKDLRTNYEEGNPSSVFDGGIDSFIDEGIRWRAGAR 367 >gi|269955834|ref|YP_003325623.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM 15894] gi|269304515|gb|ACZ30065.1| peptide chain release factor 2 [Xylanimonas cellulosilytica DSM 15894] Length = 370 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 173/351 (49%), Gaps = 15/351 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGD 68 L+ + A + + S D + +A+S ++++ + D+ T+ +G Sbjct: 28 ALQAKIAVLSEQASVPDLWDDPEAAQKITSALSATQAELNRVKSLGRRIDDVETLVELGQ 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D + A+ EV+ I K++ LE L D + ++ IRAG GG +AA F Sbjct: 88 EMGDEDSLTEAEAEVVGIRKDLDALEV----RTLLSGEYDARDAVVTIRAGAGGVDAADF 143 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + +V+ +S ++ G K ++ F + E+G HR+ R+ Sbjct: 144 AEMLMRMYLRWAERHGFPTKVMDTSYAEEAGLKSATFEVNAPYAFGNLSVEAGTHRLVRI 203 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V V+P V+IP +I++D R+SG GGQ VNTTDSAVR+T Sbjct: 204 SPFDNQGRRQTSFAAVEVVPLIEQTDSVEIPESEIKVDVFRSSGPGGQSVNTTDSAVRMT 263 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSE 304 HIPTGI+V+ +EKSQ QNR A++VL++RL V ++ E +A +K G + Sbjct: 264 HIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLVRQQ----EEAAKKKELAGDIKASWGD 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 ++R+Y + + D R V G ID+ I + + + S Sbjct: 320 QMRSYVLQPYQMVKDLRTEHESGNTAAVFDGAIDEFIEAGIRWRRNAQVKS 370 >gi|300692007|ref|YP_003753002.1| peptide chain release factor RF-2; programmed frameshift [Ralstonia solanacearum PSI07] gi|299079067|emb|CBJ51729.1| peptide chain release factor RF-2; programmed frameshift [Ralstonia solanacearum PSI07] Length = 300 Score = 205 bits (521), Expect = 8e-51, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ D+ +L + + D + + + + Sbjct: 2 VFALTKLDEDLNGGAELFELAREEGDDDTVEAVEADTAGMRAIVEDM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K EVL S+ D G K Sbjct: 57 PMDAANCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKTEVLEESEGDVAGIKSASI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R +++G HTS +++ V PE + ++++ D+R+ Sbjct: 117 KVEGEYAFGFLRTETGVHRLVRKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITHIP+GI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRITHIPSGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 KRQAEADKLEASKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDTFIE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|326387471|ref|ZP_08209080.1| peptide chain release factor 2 [Novosphingobium nitrogenifigens DSM 19370] gi|326208127|gb|EGD58935.1| peptide chain release factor 2 [Novosphingobium nitrogenifigens DSM 19370] Length = 375 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 106/342 (30%), Positives = 164/342 (47%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R E++ R+ + D + E + I + Q+ + + + Sbjct: 30 RRLHELDARVEDPKLWDDPKQAEAVMRERRRLDAAIGTVKQIGQEMADAIEFVELGEMEG 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + E+ L D + LE+ AG GG+E+ + Sbjct: 90 DEDTVAEGLATLAALAERADA-----DKVQALLAGEADANNAFLEVHAGAGGTESQDWAE 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A +KVE++ + G K I G + K ESGVHR+ R+ Sbjct: 145 MLQRMYTRWAERHGYKVELVDYHAGEAAGIKGCTLLIKGENAYGYAKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++S R HTS ++V V PE + D++I D+++DT RASG+GGQHVNTTDSAVRITH+ Sbjct: 205 YDSSARRHTSFSSVWVYPEIDDNIDIEINPADLKVDTYRASGAGGQHVNTTDSAVRITHV 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERI 306 PTGI+V + +++SQH+NR AM +LRARLY+ E + S K +IG G +I Sbjct: 265 PTGIIVASQNDRSQHKNRATAMGMLRARLYEAELAKREAAASGEYAAKTEIGWG---HQI 321 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y ++ D R + VL G +D + L+ Sbjct: 322 RSYVLQPYQQVKDLRTGVVSTNPTEVLDGALDPFMAAALSQR 363 >gi|300704641|ref|YP_003746244.1| peptide chain release factor rf-2; programmed frameshift [Ralstonia solanacearum CFBP2957] gi|299072305|emb|CBJ43638.1| peptide chain release factor RF-2; programmed frameshift [Ralstonia solanacearum CFBP2957] Length = 300 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ D+ +L + + D I + + + Sbjct: 2 VFALTKLDEDLTGGAELFELAREEGDDDTIEAIETDTAGMRAIVEDM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K EVL S+ D G K Sbjct: 57 PMDAANCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKAEVLEESEGDVAGIKSASI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R +++G HTS +++ V PE + ++++ D+R+ Sbjct: 117 KVEGEYAFGFLRTETGVHRLVRKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITHIPTGI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 KRQAEADKLEASKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIQ 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|211938843|pdb|2JL5|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 1 Of 4). This File Contains The 30s Subunit. gi|211938901|pdb|2JL7|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome (Part 3 Of 4). This File Contains The 30s Subunit. gi|237823553|pdb|2WH1|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome gi|237823612|pdb|2WH3|Y Chain Y, Insights Into Translational Termination From The Structure Of Rf2 Bound To The Ribosome). This File Contains The 30s Subunit Length = 351 Score = 205 bits (521), Expect = 9e-51, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+E R+ + + K+++E A + + + Q +L Sbjct: 13 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELME 72 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ +L + E + L +K+ IL I+ G GG+E Sbjct: 73 ELPAEEREALKPELEEAAKKLDELYHQTL---------LNFPHAEKNAILTIQPGAGGTE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VEV+ + + G + G + + E+GVHR Sbjct: 124 ACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHR 183 Query: 185 VQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +ASGR HTS A + E++V + E++RID MRASG GGQ VNTTDSA Sbjct: 184 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V + +SQ +N+ A+K+L+ARLY++ERK+ E A R ++ + Sbjct: 244 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVEPIEW 302 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR L + E VL G + D+I L + Sbjct: 303 GSQIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 351 >gi|302766928|ref|XP_002966884.1| hypothetical protein SELMODRAFT_87356 [Selaginella moellendorffii] gi|300164875|gb|EFJ31483.1| hypothetical protein SELMODRAFT_87356 [Selaginella moellendorffii] Length = 427 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 17/344 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTVIG 67 D+ ++ ++E + + + + E+ ++S + +I + + E DL + Sbjct: 87 DVLSKLKDLEKELEKPDLWSDTARASRYSREFGSLSSRVKEIREMESELVENVDLVELAR 146 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + L L + +D C LE++AG GG+E+ Sbjct: 147 EEKDEQVEAEAVSALATLRKAAKD-----KELLALLCEENDGCPCFLEVQAGAGGAESMD 201 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY+ +A R ++ V+ D G K + G + K E+GVHR+ R Sbjct: 202 FAAMLLRMYKLWALQRGFEAAVVDEMPGDRAGIKRATLRLEGDFAYGFAKTEAGVHRLVR 261 Query: 188 VPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + +GR HTS A VAV+P +++I D+ ID R+SG+GGQHVNTTDSA+R Sbjct: 262 ISPFDEAGRRHTSFAAVAVIPILDNAGAEIEINEADLVIDRFRSSGAGGQHVNTTDSAIR 321 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDR 302 I H PTGI V +E+SQH+N+ AM+VLR+RLY +E KR E + + + +I G+ Sbjct: 322 IVHKPTGITVQCQNERSQHKNKDSAMEVLRSRLYQLELKRKTEETAQHTQSLHEISWGN- 380 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + + D R + VL G +D I L+ Sbjct: 381 --QIRSYVLQPYQIVKDLRTGYEVTNPTAVLDGGLDPFILQYLS 422 >gi|326564766|gb|EGE14978.1| peptide chain release factor 2 [Moraxella catarrhalis 46P47B1] Length = 304 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 155/309 (50%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + I+ I K + + + + + +S + D+ A+ + + Sbjct: 2 LDGIVGVIDGLSAKLDDAAAMLELAVEDDDESLLSDVQAELDDALNSVEE-----LEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C L+I++G+GG+EA + L RMY R+ +K EVL S+ G K Sbjct: 57 MFSGEMDANNCYLDIQSGSGGTEAQDWAQMLLRMYLRWCESHGFKAEVLEVSEGGVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 + G F ++ E GVHR+ R +++ HTS A V V PE + Sbjct: 117 SATIMVKGDYAFGWLRTEIGVHRLVRKSPFDSNNGRHTSFAAVFVSPEIDDNIDIDINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH PTG++V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHQPTGVVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ K IG G +IR+Y RI D R + VL G +D Sbjct: 237 LEMQKRMEKQQALEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVETSNTTAVLNGDLD 293 Query: 338 DIINPLLTA 346 I L A Sbjct: 294 KFIEASLKA 302 >gi|309390159|gb|ADO78039.1| bacterial peptide chain release factor 2 (bRF-2) [Halanaerobium praevalens DSM 2228] Length = 365 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 108/346 (31%), Positives = 177/346 (51%), Gaps = 10/346 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L +++ + KN IE M+ D ++ + I +I + +++ ++ Sbjct: 22 LLDREKLFETKN---SIEAEMAAGGFWDDKENARQKSQQLDRIKKRIKVIQSLEEKFEEA 78 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + LA ++ E L P DD + IL I G GG Sbjct: 79 EIYLELAAEEDANLNKELQNTLAELEKEIEKLELKLRLNEPY---DDHNAILSIHPGAGG 135 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY R+A +++E L + ++ G K + ISG + +K E GV Sbjct: 136 TESQDWAQMLLRMYSRWAEANDYQLETLDFNPGEEAGIKSVTLMISGDYAYGYLKGERGV 195 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +ASGR HTS A+V V+PE +V+I +++IDT RASG+GGQHVN TD Sbjct: 196 HRLVRISPFDASGRRHTSFASVDVMPEIDSDLEVEIDENNLKIDTYRASGAGGQHVNKTD 255 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH PTG++V +++SQH+N+ AMK+L ++L +++R+ A + + Sbjct: 256 SAVRITHQPTGVVVQCQNQRSQHKNKETAMKILSSKLLELKREAQAEKIDEL-GGEHKEI 314 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F I DHR + ++ V+ GY+D+ I L Sbjct: 315 AWGSQIRSYVFHPYSMIKDHRTDFEEGNVDKVMDGYLDEFIESYLK 360 >gi|83748475|ref|ZP_00945497.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Ralstonia solanacearum UW551] gi|207725248|ref|YP_002255644.1| peptide chain release factor 2 (rf-2) protein [Ralstonia solanacearum MolK2] gi|207743623|ref|YP_002260015.1| peptide chain release factor 2 (rf-2) protein [Ralstonia solanacearum IPO1609] gi|83724886|gb|EAP72042.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Ralstonia solanacearum UW551] gi|206590482|emb|CAQ37444.1| peptide chain release factor 2 (rf-2) protein [Ralstonia solanacearum MolK2] gi|206595022|emb|CAQ61949.1| peptide chain release factor 2 (rf-2) protein [Ralstonia solanacearum IPO1609] Length = 300 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + ++ D+ +L + + D I + + + Sbjct: 2 VFALTKLDEDLTGGAELFELAREEGDDDTIEAIEADTAGMRAIVEDM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K EVL S+ D G K Sbjct: 57 PMDAANCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKAEVLEESEGDVAGIKSASI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R +++G HTS +++ V PE + ++++ D+R+ Sbjct: 117 KVEGEYAFGFLRTETGVHRLVRKSPFDSAGGRHTSFSSIFVYPEVDDSIEIEVNPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVRITHIPTGI+V +++SQH+NR AM +L++RLY+ E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRITHIPTGIVVQCQNDRSQHRNRAEAMTMLKSRLYEHELR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E K +G G +IR+Y Q RI D R N+ + + VL G +D I Sbjct: 237 KRQAEADKLEASKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDAFIQ 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|32266159|ref|NP_860191.1| peptide chain release factor 2 [Helicobacter hepaticus ATCC 51449] gi|81666133|sp|Q7VIE6|RF2_HELHP RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|32262209|gb|AAP77257.1| peptide chain release factor 2 [Helicobacter hepaticus ATCC 51449] Length = 366 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 112/343 (32%), Positives = 182/343 (53%), Gaps = 9/343 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L+ + +IE + + + E + Y KQE D + Sbjct: 28 SLQKQLKDIENLEQDEHFWNDSKRAAEVAKQKRKCERMLQTYTNTKQEIDDALELYEIAM 87 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 S+ + R L + A ++ ++ +D + I+ I+ G GG+E+ + Sbjct: 88 SEEDSRTLELLFEQAPSLLSHI--QKVEIEVMLSGENDGSNAIITIQPGAGGTESQDWAS 145 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY R++ R +KVE+L D ++ G K + I G + K E+GVHR+ R+ Sbjct: 146 ILYRMYLRWSERRGFKVELLDYQDGEEAGIKGVAFIIKGENAYGYAKSENGVHRLVRISP 205 Query: 191 TEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +A+ + HTS A+V V PE +I+++I +DIRIDT RASG+GGQHVN T+SA+RITH Sbjct: 206 FDANAKRHTSFASVQVSPELDDDINIEIEDKDIRIDTYRASGAGGQHVNKTESAIRITHF 265 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTGI+V +++SQH+N+ AMK+L+++LY++E ++ E ++ K +IG G +IR+ Sbjct: 266 PTGIVVQCQNDRSQHKNKATAMKMLKSKLYELELQKNQ-EGASQEKSEIGWG---HQIRS 321 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 Y + ++ D R VL G ID+II +L AK Sbjct: 322 YVLAPYQQVKDLRTQFATSDTSGVLDGDIDEIIESVLVHTSAK 364 >gi|257069176|ref|YP_003155431.1| peptide chain release factor 2 [Brachybacterium faecium DSM 4810] gi|256559994|gb|ACU85841.1| bacterial peptide chain release factor 2 (bRF-2) [Brachybacterium faecium DSM 4810] Length = 371 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 104/350 (29%), Positives = 175/350 (50%), Gaps = 15/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 I L + A++E + S D + +A+S S+ + +DL + Sbjct: 25 DIDALDAKIADLEKQASAQDLWDDVDNAQKVSSALSHAQSERRRISELDSRIEDLEVMVQ 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D++ + A+ E+++I K + ELE L D++ ++ IRAG GG +A Sbjct: 85 LAAEEDDADTLEEAENELVSIHKTLDELEV----RTLLSGEYDERDAVITIRAGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V+ +S ++ G K + +S + + E G HR+ Sbjct: 141 ADFAEMLMRMYLRWAERHGYATKVMDTSHAEEAGLKSVTFEVSAPFAYGTLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P + ++IP D+++D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVIPLIESTDSIEIPENDLKVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 R+TH+PTG +V+ EKSQ QNR A++V+++RL ++ E +A RK G Sbjct: 261 RMTHLPTGTVVSMQDEKSQIQNRAAALRVMQSRLLLLK----KAEEAAERKELAGDVKAS 316 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + + + D R + V G ID+ I+ + + Sbjct: 317 WGDQMRSYVLNPYQMVKDLRTDYQEGNPSSVFDGEIDEFIDAGIRWRAEQ 366 >gi|21231300|ref|NP_637217.1| peptide chain release factor 2 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66768648|ref|YP_243410.1| peptide chain release factor 2 [Xanthomonas campestris pv. campestris str. 8004] gi|188991534|ref|YP_001903544.1| peptide chain release factor 2 [Xanthomonas campestris pv. campestris str. B100] gi|21112954|gb|AAM41141.1| putative peptide release factor 2 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573980|gb|AAY49390.1| putative peptide release factor 2 [Xanthomonas campestris pv. campestris str. 8004] gi|167733294|emb|CAP51493.1| peptide chain release factor 2 [Xanthomonas campestris pv. campestris] Length = 313 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 105/309 (33%), Positives = 156/309 (50%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + + I+ + +L + + D + ++ + + +LE + Sbjct: 2 LEKTVIGIADVLAGLTDAGELLDLA-ESEQDEDTAVAVIADLDKYQAHVEKLEFQRM--- 57 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 D + ++I+AG GG+EA + L RMY R+A R WK E++ S + G K Sbjct: 58 -FSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G + +K E GVHR+ R ++ R HTS +V V PE I++DI Sbjct: 117 SATIRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQNR AMK+L A+LY+ Sbjct: 177 DLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYE 236 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ER A K IG G +IR Y Q RI D R + + VL G +D Sbjct: 237 LEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + + L A Sbjct: 294 EFVEASLKA 302 >gi|220913146|ref|YP_002488455.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6] gi|254790908|sp|B8HBH8|RF2_ARTCA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|219860024|gb|ACL40366.1| peptide chain release factor 2 [Arthrobacter chlorophenolicus A6] Length = 371 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 106/352 (30%), Positives = 169/352 (48%), Gaps = 11/352 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ AE+ R E D + + +S S++ DL + Sbjct: 25 DMEALREDIAELSERAGEPDLWDDPAAAQKITSRLSHRQSELERLTTLASRIDDLEVLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G D++ A E+ +I+K ++ LE D++ ++ IRAG GG +A Sbjct: 85 LGQDEGDADSMGEAAAELESIQKALKNLEVVTL----LSGEYDEREAVVSIRAGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + V+ +S ++ G K + F + E+G HR+ Sbjct: 141 ADFAEMLMRMYLRWAERHGYPTTVMDTSYAEEAGLKSATFEVKAPYAFGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P +DIP +IR+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVIPLIEQTDSIDIPDNEIRVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIPTG++V+ +EKSQ QNR AM+VL++RL +++++ E+ A S Sbjct: 261 RLTHIPTGVVVSMQNEKSQLQNRAAAMRVLQSRLLLLKKEQEDAEKKALAGDVKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + + + D R + V G IDD I+ + Sbjct: 319 DQMRSYVLNPYQMVKDLRTEHEVGNTSAVFDGEIDDFIDAGIRWRTDNRNAE 370 >gi|290959957|ref|YP_003491139.1| peptide chain release factor 2 [Streptomyces scabiei 87.22] gi|260649483|emb|CBG72598.1| peptide chain release factor 2 [Streptomyces scabiei 87.22] Length = 368 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 166/348 (47%), Gaps = 11/348 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + L+ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDKLRADIAVLEEQAAVPSLWDNPDEAQKITSKLSHLQAEVRKAEALRGRIDDLGVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ ++ K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAESELASVRKALDEMEV----RTLLSGEYDSREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQKGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+V +E+SQ QN+ AM VL+A+L D R+ A + G Sbjct: 261 RLTHLPTGIVVSCQNERSQIQNKASAMNVLQAKLLDRRRQEEQARMDALKGD--GGNSWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + E V G I+ + + + + Sbjct: 319 NQMRSYVLHPYQMVKDLRTEYEVGNPEAVFNGEIEGFLEAGIRWRKQQ 366 >gi|149192359|ref|ZP_01870562.1| peptide chain release factor 1 [Vibrio shilonii AK1] gi|148833798|gb|EDL50832.1| peptide chain release factor 1 [Vibrio shilonii AK1] Length = 229 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 125/227 (55%), Positives = 172/227 (75%), Gaps = 2/227 (0%) Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 FRMY +YA + W++EV+SS++++ GGYKE++A +SG G + +KFESG HRVQRVPATE Sbjct: 1 FRMYSKYAEKKGWRIEVMSSNESEQGGYKEMIAKVSGDGAYGVLKFESGGHRVQRVPATE 60 Query: 193 ASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + GRVHTSA TVAV+ E E + +I D++IDT RASG+GGQHVNTTDSA+RITH+PT Sbjct: 61 SQGRVHTSACTVAVMAEIPEAEIPEIKAADLKIDTFRASGAGGQHVNTTDSAIRITHLPT 120 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 G +V E+SQH+N+ +AM VL AR+ E + A E S R+ +GSGDRS+RIRTYN Sbjct: 121 GTVVECQDERSQHKNKAKAMSVLAARIIAAEEAKRAAEVSDTRRNLLGSGDRSDRIRTYN 180 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + QGR++DHRINLTLY+L V++G + +++P+L HQA + + +E Sbjct: 181 YPQGRVSDHRINLTLYRLSEVMEGDLQSLVDPVLQEHQADQLAALAE 227 >gi|302755404|ref|XP_002961126.1| hypothetical protein SELMODRAFT_75160 [Selaginella moellendorffii] gi|300172065|gb|EFJ38665.1| hypothetical protein SELMODRAFT_75160 [Selaginella moellendorffii] Length = 427 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 170/344 (49%), Gaps = 17/344 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTVIG 67 D+ ++ ++E + + + + E+ ++S + +I + + E DL + Sbjct: 87 DVLSKLKDLEKELEKPDLWSDTARASRYSREFGSLSSRVKEIREMESELVENVDLVELAR 146 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + L L + +D C LE++AG GG+E+ Sbjct: 147 EEKDEQVEAEAVSALATLRKAAKD-----KELLALLCEENDGCPCFLEVQAGAGGAESMD 201 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY+ +A R ++ V+ D G K + G + K E+GVHR+ R Sbjct: 202 FAAMLLRMYKLWALQRGFEAAVVDEMPGDRAGIKRATLRLEGDFAYGFAKTEAGVHRLVR 261 Query: 188 VPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + +GR HTS A VAV+P +++I D+ ID R+SG+GGQHVNTTDSA+R Sbjct: 262 ISPFDEAGRRHTSFAAVAVIPILDNAGAEIEINEADLVIDRFRSSGAGGQHVNTTDSAIR 321 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDR 302 I H PTGI V +E+SQH+N+ AM+VLR+RLY +E KR E + + + +I G+ Sbjct: 322 IVHKPTGITVQCQNERSQHKNKDSAMEVLRSRLYQLELKRKTEETAQHTQSLHEISWGN- 380 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + + D R + VL G +D I L+ Sbjct: 381 --QIRSYVLQPYQIVKDLRTGYEVTNPTAVLDGGLDPFILQYLS 422 >gi|257459323|ref|ZP_05624436.1| peptide chain release factor 2 [Campylobacter gracilis RM3268] gi|257443252|gb|EEV18382.1| peptide chain release factor 2 [Campylobacter gracilis RM3268] Length = 365 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 110/344 (31%), Positives = 187/344 (54%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++K R EIE ++ K + +E IS I++K + + L+ + Sbjct: 27 ENIKARLKEIEELENDQNLWQDIAKAGAIGKEKTKISNILNKFLNAKNAVDDAKALYELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N + + A E+ + + ++ +DDK+ I+ I G GG+E+ Sbjct: 87 NSENDEE-----TINSLFAEADELEDKIINLEISMMLSGENDDKNAIVSIHPGAGGTESN 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+ +K+EVL + ++ G K++ + G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRFCEREGFKIEVLDFQEGEEAGLKDVSFIVRGENAYGYLKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 RV +++GR HTS ++V V PE +I+++I +DIR+D RASG+GGQH+N T+SAVR Sbjct: 202 RVSPFDSAGRRHTSFSSVMVSPELNDDIEINIEEKDIRVDVFRASGAGGQHINKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+N+ AMKVL++RLY++E + + K +IG G Sbjct: 262 ITHIPTGIVVNCQNDRSQHKNKETAMKVLKSRLYELELMKQREKDENAPKSEIGWG---H 318 Query: 305 RIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F ++ D+R + + +L G I II +L + Sbjct: 319 QIRSYVLFPYQQVKDNRSGEAYSQTDAILDGDIKSIIEGVLISQ 362 >gi|167626878|ref|YP_001677378.1| peptide chain release factor 2 [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167596879|gb|ABZ86877.1| peptide chain release factor 2 [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 346 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 105/343 (30%), Positives = 174/343 (50%), Gaps = 17/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K R E+ + + + D L + + ++ + + Sbjct: 11 DVKKERLTEVLMELEDGSIWDNPEYAQNLGRQKVELENVVHNCEYISETLETL------- 63 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + +E + E+ +++ ++ + + D + L+I++G+GG+EA Sbjct: 64 TELLELAEEDESLMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQ 123 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +KV V SD D G K + G + ++ E+G+HR+ Sbjct: 124 DWAEMLMRMYMRWADSHGFKVTVDDVSDGDVAGIKGCTLKVEGEYAYGWLRTETGIHRLV 183 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ + HTS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVR Sbjct: 184 RKSPFDSNSKRHTSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVR 243 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITHIPT I+V + S++SQH+NR AMK L+++LY++E ++ E++ + K IG G Sbjct: 244 ITHIPTNIVVQSQSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG-- 301 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + VL G +D I L Sbjct: 302 -SQIRSYVLDQSRIKDLRTGVENTNTQAVLDGDLDKFIEASLK 343 >gi|329769029|ref|ZP_08260451.1| peptide chain release factor 2 [Gemella sanguinis M325] gi|328839520|gb|EGF89096.1| peptide chain release factor 2 [Gemella sanguinis M325] Length = 372 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 185/350 (52%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I D + R AEIE M ++ + + I ++ + + ++ Sbjct: 25 KIEDKEQRVAEIENMMLDADFWNDSDNASALVTESKSIKKELDEFSNMLDYLEHSQEMVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + ++ +++ + ++ LL + D+ + IL+I AG GG++A Sbjct: 85 FLRDEEDKE--IYNDLEETVATLKDSVEDFSFRLLFSEEYDNNNAILDIHAGAGGTDATD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMYER+ + + K L+ D G K + G + +K E GVHRV R Sbjct: 143 WAEIMLRMYERFFSKQGLKYSYLNYQSGDITGVKSATIKVEGDFAYGLLKGEKGVHRVIR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + SG+ HTS A++ V+PE ++ +++I +D++IDT RA G+GGQH+NTTDSAVR Sbjct: 203 ISPFDPSGKRHTSFASIDVMPEFSDDEINIEINNDDLKIDTYRAQGAGGQHINTTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDR 302 ITH+PTGI+V + +E+SQ +N+ AMK L+++LY +E + E ++ R Q IG G Sbjct: 263 ITHLPTGIVVQSQAERSQIKNKDTAMKNLKSKLYQLELEEKEKELASIRGEQKDIGWG-- 320 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F+ + DHR N + ++ V+ G I D I+ L + + Sbjct: 321 -SQIRSYVFTPYTMVKDHRTNYEVSTVDKVMDGDIIDFIDAYLHYNMKEK 369 >gi|291544247|emb|CBL17356.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus sp. 18P13] Length = 375 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 116/347 (33%), Positives = 186/347 (53%), Gaps = 16/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 Q+ ++ ++ ++++ D K+ ++ + + K +QK ++ L Sbjct: 26 QVARAQSELDDLRIQVTYDGFWDDAEKSQKVMQKIRKLENTVDKFRHLNQKLEDTIALID 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + DS ++ Q +E ELE E LL + D + IL AG GG+E Sbjct: 86 LCMEEDDDSSNEEILQ----DVESFKEELEAEKLSTLLTGEYDG-SNAILTFHAGAGGTE 140 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+A +KV +L D D+ G K + G+ + +K E+GVHR Sbjct: 141 AQDWAQMLYRMYNRWAERHDFKVSLLDYLDGDEAGLKSASMLVEGQNAYGFLKSEAGVHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + RV +ASGR HTS A + V+PE ++VDI LED+++D R+SG+GGQH+N T SA Sbjct: 201 LVRVSPFDASGRRHTSFAALEVMPEIDDSMEVDIRLEDVKMDVFRSSGAGGQHINKTSSA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VR+THIPTGI+V +++SQ QNR AMK+LR++L +++ + + S + +Q I G Sbjct: 261 VRLTHIPTGIVVSCQTQRSQFQNRDFAMKMLRSKLVEIKEREHLEKISDIKGVQKEIAWG 320 Query: 301 DRSERIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR + V+ G +D IN L A Sbjct: 321 A---QIRSYVFMPYTLAKDHRTGFENGNISAVMDGDLDGFINAYLKA 364 >gi|295426388|ref|ZP_06819038.1| peptide chain release factor RF2 [Lactobacillus amylolyticus DSM 11664] gi|295063756|gb|EFG54714.1| peptide chain release factor RF2 [Lactobacillus amylolyticus DSM 11664] Length = 332 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 97/333 (29%), Positives = 162/333 (48%), Gaps = 16/333 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVIGDHNSDSEIRDLA 79 M+E + + + + + + K + + K+E +D +I + ++ Sbjct: 1 MAEPNFWNDQDQAQKLISETNLLKEKRDSFLELKKEYEDETTALELIKEEPDKELQEEVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + LL D + ++EI G GG+EA + L RMY+RY Sbjct: 61 NNLTHLQSAF-----HNYELDLLMSGKYDSHNALVEIHPGAGGTEAMDWASMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K E+ ++ G K + +SG+ + +K E+GVHR+ R+ +++ R HT Sbjct: 116 CESVGFKFEINDYEPGEEAGVKSVSIRVSGKNAYGMLKSENGVHRLVRISPFDSAKRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A+V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + Sbjct: 176 SFASVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +++SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F Sbjct: 236 AQRSQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYN 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R N ++ V+ G + I L Sbjct: 293 LVKDLRTNYETADVKGVMDGKLQPFIYAYLQWR 325 >gi|6321295|ref|NP_011372.1| Mrf1p [Saccharomyces cerevisiae S288c] gi|400276|sp|P30775|RF1M_YEAST RecName: Full=Peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|3972|emb|CAA42932.1| mitochondrial release factor 1 [Saccharomyces cerevisiae] gi|1322722|emb|CAA96855.1| MRF1 [Saccharomyces cerevisiae] gi|1498241|emb|CAA68219.1| MRF1 [Saccharomyces cerevisiae] gi|151943668|gb|EDN61978.1| mitochondrial translation release factor [Saccharomyces cerevisiae YJM789] gi|190407089|gb|EDV10356.1| mitochondrial polypeptide chain release factor [Saccharomyces cerevisiae RM11-1a] gi|207345440|gb|EDZ72262.1| YGL143Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256272236|gb|EEU07227.1| Mrf1p [Saccharomyces cerevisiae JAY291] gi|259146366|emb|CAY79623.1| Mrf1p [Saccharomyces cerevisiae EC1118] gi|285812067|tpg|DAA07967.1| TPA: Mrf1p [Saccharomyces cerevisiae S288c] gi|323304985|gb|EGA58739.1| Mrf1p [Saccharomyces cerevisiae FostersB] Length = 413 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 139/365 (38%), Positives = 199/365 (54%), Gaps = 16/365 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L KQ + +++ +S D + + YA +S + Y +K E + L Sbjct: 52 LLVKQAEKYEAELKDLDKDLSCGIHFD--VNKQKHYAKLSALTDTFIEYKEKLNELKSLQ 109 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I SD +R A+ E + + + + LLP DK +LE+R G GG Sbjct: 110 EMIV---SDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKPSLLELRPGVGGI 166 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGV 182 EA +F +L MY YA RKWK ++S ++N+ G G + + +I G + R++FE+GV Sbjct: 167 EAMIFTQNLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEAGSYDRLRFEAGV 226 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGG 234 HRVQR+P+TE GR HTS A V VLP+ + +IR+D MRASG GG Sbjct: 227 HRVQRIPSTETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGG 286 Query: 235 QHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVNTTDSAVR+THIP+GI+V+ E+SQH+N+ +A +LRARL + ER + R Sbjct: 287 QHVNTTDSAVRLTHIPSGIVVSMQDERSQHKNKAKAFTILRARLAEKERLEKEEKERKAR 346 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 K Q+ S +RS++IRTYNF Q RITDHR TL L VL G +D++I + + Sbjct: 347 KSQVSSTNRSDKIRTYNFPQNRITDHRCGFTLLDLPGVLSGERLDEVIEAMSKYDSTERA 406 Query: 353 GSASE 357 E Sbjct: 407 KELLE 411 >gi|261749210|ref|YP_003256895.1| peptide chain release factor 1 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497302|gb|ACX83752.1| peptide chain release factor 1 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 364 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 146/365 (40%), Positives = 222/365 (60%), Gaps = 16/365 (4%) Query: 1 MVFLS-HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY---AAISPIISKISIYDQKK 56 M +S K+ L+ F I + + V K + +++ Y +K Sbjct: 1 MKKISLIKKFEILEKEFHGIGNSIIQPHIVSNQKKYKTLLKKYRKLEKVVNIYEKYKKKL 60 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT-------DDD 109 Q+ ++++ ++SD E++++A +E I +++ +E + + LL +D Sbjct: 61 TALQEANSILK-NDSDPEMKEIAYLEKNKILEDLSNIEKKSDDLLFSTSPTGRENLENDH 119 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 ++ I+E+R+GTGG EA LFV D+ RMY Y WK +++ + GYKEI+ +SG Sbjct: 120 RNAIVELRSGTGGDEACLFVEDILRMYIMYFKQVGWKYKIIHAQKGGIQGYKEIILDVSG 179 Query: 170 RG---VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDT 226 + V+ +KFESGVHRVQR+P TE+ GRVHTSA TVAVLPE +I++ I L DI+ DT Sbjct: 180 KEGEGVYGNLKFESGVHRVQRIPKTESQGRVHTSAITVAVLPEIKDIEMKIHLSDIKKDT 239 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+SGSGGQHVN T+SAVR+THIPT I V E+SQH+N +AM VLR+R+Y E+++ Sbjct: 240 FRSSGSGGQHVNKTESAVRLTHIPTKITVECQEERSQHKNFEKAMNVLRSRIYQNEKEKR 299 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 ERS RK + +GDRS +IRTYN+ +GR+TDHRI+ ++Y L + G I ++IN L Sbjct: 300 FKERSIKRKSLVSTGDRSVKIRTYNYPKGRVTDHRIHKSIYNLVGFMNGNIQEMINFLKL 359 Query: 346 AHQAK 350 + + + Sbjct: 360 SEKNQ 364 >gi|46200154|ref|YP_005821.1| peptide chain release factor 2 [Thermus thermophilus HB27] gi|55980111|ref|YP_143408.1| peptide chain release factor 2 [Thermus thermophilus HB8] gi|218766794|pdb|3F1E|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|218766850|pdb|3F1G|X Chain X, Crystal Structure Of A Translation Termination Complex Formed With Release Factor Rf2. This File Contains The 30s Subunit, Rf2, Two Trna, And Mrna Molecules Of The Second 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. gi|46197782|gb|AAS82194.1| bacterial peptide chain release factor 2 (RF-2) [Thermus thermophilus HB27] gi|55771524|dbj|BAD69965.1| peptide chain release factor 2 [Thermus thermophilus HB8] Length = 378 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+E R+ + + K+++E A + + + Q +L Sbjct: 31 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELME 90 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ +L + E + L +K+ IL I+ G GG+E Sbjct: 91 ELPAEEREALKPELEEAAKKLDELYHQTL---------LNFPHAEKNAILTIQPGAGGTE 141 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VEV+ + + G + G + + E+GVHR Sbjct: 142 ACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHR 201 Query: 185 VQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +ASGR HTS A + E++V + E++RID MRASG GGQ VNTTDSA Sbjct: 202 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 261 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V + +SQ +N+ A+K+L+ARLY++ERK+ E A R ++ + Sbjct: 262 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVRPIEW 320 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR L + E VL G + D+I L + Sbjct: 321 GSQIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 369 >gi|283850198|ref|ZP_06367487.1| peptide chain release factor 2 [Desulfovibrio sp. FW1012B] gi|283574224|gb|EFC22195.1| peptide chain release factor 2 [Desulfovibrio sp. FW1012B] Length = 314 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 116/317 (36%), Positives = 173/317 (54%), Gaps = 14/317 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + ++ ++ K + + ++ D NS + LA+ V E Sbjct: 4 ILREKSVLTAKVTGGEKLLAAKADLDEWMSLAKDDNSPEILDALAEQIVSLGS------E 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L +D+ ILEI G GG+EA + L RMY R+A +++ ++VL Sbjct: 58 LADAELAAFFGPEDNADAILEIHPGAGGTEAQDWAEMLLRMYRRWAERKQFGIKVLDFLP 117 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EI 213 D+ G K + ISG + + E G+HR+ R+ ++SGR HTS A+V V P+A +I Sbjct: 118 GDEAGVKSVTLQISGPYAYGLLDAEKGIHRLIRISPFDSSGRRHTSFASVDVYPDAGLDI 177 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 D+D+ ED+R+D RASG GGQHVN T SA+RITH+PTGI+V +EKSQH+NR AMKV Sbjct: 178 DIDVKEEDLRVDVFRASGPGGQHVNKTSSAIRITHLPTGIVVQCQNEKSQHRNRESAMKV 237 Query: 273 LRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 L+ARLYD+E K++ E+ + K IG G +IRTY + + DHR + + + Sbjct: 238 LKARLYDLELKKIQAEKQENYDSKNAIGFG---SQIRTYTMQPYQLVKDHRTGVEVGDVG 294 Query: 330 YVLQGYIDDIINPLLTA 346 V+ G +D I L A Sbjct: 295 AVMDGELDKFIRGYLLA 311 >gi|299137096|ref|ZP_07030279.1| peptide chain release factor 2 [Acidobacterium sp. MP5ACTX8] gi|298601611|gb|EFI57766.1| peptide chain release factor 2 [Acidobacterium sp. MP5ACTX8] Length = 375 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 175/346 (50%), Gaps = 17/346 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 LK A IE ++++ K L E + ++ + ++ ++ ++ + Sbjct: 26 LKKELAVIEEKIADPAVWADAAKSQPLMRERKRLESQLADDAELARRGEDIDAYFDLMRE 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + E ++ + + + + +D + I+ + G GG+E+ + Sbjct: 86 GEASVE------PDLKREIDSLVAFSEALESRTMLSEENDTLNAIVTVHPGAGGTESQDW 139 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A + +K E+ D D+ G K TI+G F + E+GVHR+ R+ Sbjct: 140 AEMLMRMYLRWAERQGFKTEINELQDGDEAGIKSATFTITGDFAFGLIAGETGVHRLVRI 199 Query: 189 PATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + + R HTS A+V V PE + +DI +D+RIDT R+ G GGQHVNTTDSAVRIT Sbjct: 200 SPFDQAKRRHTSFASVFVSPEIDDSIVIDIKPDDLRIDTYRSGGKGGQHVNTTDSAVRIT 259 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSE 304 H+PTGI+ +E+SQH+N+ +AMK+LR+RLY+ E + + + KL+I + Sbjct: 260 HLPTGIVAGCQNERSQHKNKEKAMKMLRSRLYEYELDKKKAVSRKLEDSKLEI---NFGS 316 Query: 305 RIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y RI D R + + ++ VL G ++ I L + Sbjct: 317 QIRSYVLQPYRIAKDLRTRVEVGDVDRVLDGELEPFIRGYLKMRRE 362 >gi|261839033|gb|ACX98798.1| peptide chain release factor 2 [Helicobacter pylori 52] Length = 363 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESAELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|229525316|ref|ZP_04414721.1| peptide chain release factor 2 [Vibrio cholerae bv. albensis VL426] gi|229338897|gb|EEO03914.1| peptide chain release factor 2 [Vibrio cholerae bv. albensis VL426] Length = 299 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 108/304 (35%), Positives = 165/304 (54%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I D+ + + L + + D E D E+ + + +LE + + Sbjct: 1 MDTIDQLDRGVDDVEGLLELAIEAE-DQETFDEIGPELDELGARLEQLE----FRRMFSG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C L+++AG+GG+EA + L RMY R+A + +K EV+ S+ D G K Sbjct: 56 DHDSSDCYLDLQAGSGGTEAQDWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATV 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++ GR HTS A+ + PE E D++I D+RI Sbjct: 116 RIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E + Sbjct: 176 DVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQ 235 Query: 284 RMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ AN K IG G +IR+Y RI D R + + VL G +D I Sbjct: 236 KQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIE 292 Query: 342 PLLT 345 L Sbjct: 293 ASLK 296 >gi|308182345|ref|YP_003926472.1| peptide chain release factor 2 [Helicobacter pylori PeCan4] gi|308064530|gb|ADO06422.1| peptide chain release factor 2 [Helicobacter pylori PeCan4] Length = 363 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESIELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|307636860|gb|ADN79310.1| hypothetical protein hp908_0179 [Helicobacter pylori 908] gi|325995449|gb|ADZ50854.1| Peptide chain release factor 2 [Helicobacter pylori 2018] gi|325997047|gb|ADZ49255.1| Peptide chain release factor 2 [Helicobacter pylori 2017] Length = 363 Score = 205 bits (520), Expect = 1e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|167563347|ref|ZP_02356263.1| peptide chain release factor 2 [Burkholderia oklahomensis EO147] gi|167570518|ref|ZP_02363392.1| peptide chain release factor 2 [Burkholderia oklahomensis C6786] Length = 248 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 149/249 (59%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ Sbjct: 61 NATIKVSGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AELRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I L Sbjct: 238 DFIGASLKQ 246 >gi|317012016|gb|ADU82624.1| peptide chain release factor 2 [Helicobacter pylori Lithuania75] Length = 363 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSTKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|254520266|ref|ZP_05132322.1| peptide chain release factor 2 [Clostridium sp. 7_2_43FAA] gi|226914015|gb|EEH99216.1| peptide chain release factor 2 [Clostridium sp. 7_2_43FAA] Length = 325 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 109/329 (33%), Positives = 166/329 (50%), Gaps = 7/329 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E+ + + E I KI Y+ +D+ + E + + E Sbjct: 1 MQENGFWEDIKRAEEVTKESKRIKDKIDRYESLVSRIEDVEILAELI---DEDDEESIDE 57 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V+ + I + LL D IL + AG GGS+A + L RMY R+ Sbjct: 58 VIREIRSIEKDVEGYRIELLLSGEYDRNDAILTLHAGVGGSDANDWTEMLLRMYTRWCEK 117 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L + D+ G K + + G + +K E GVHR+ R+ A+G+ TS A Sbjct: 118 RGFKVETLDYLEGDEAGIKSVTLKVKGEFAYGYLKAEKGVHRLVRISPFNANGKRQTSFA 177 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V VLPE + D++I ED++IDT RASG+GGQHVN T+SA+RITH+PTGI+V SE+ Sbjct: 178 SVEVLPELTKDQDIEIRSEDLKIDTYRASGAGGQHVNKTESAIRITHLPTGIVVQCQSER 237 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ N+ AM +L+++L D++ +R E+ + ++ +IR+Y F + DH Sbjct: 238 SQFSNKDTAMAMLKSKLIDLK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNMVKDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 R L V+ G ID+ I L + Sbjct: 297 RTGEETANLNAVMNGEIDNFITAYLKNNN 325 >gi|208434124|ref|YP_002265790.1| peptide chain release factor RF-2 [Helicobacter pylori G27] gi|238054481|sp|B5Z9U4|RF2_HELPG RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|208432053|gb|ACI26924.1| peptide chain release factor RF-2 [Helicobacter pylori G27] Length = 363 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----ETTLSLLYEEAPTLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|108562592|ref|YP_626908.1| peptide chain release factor 2 [Helicobacter pylori HPAG1] gi|122386784|sp|Q1CUY8|RF2_HELPH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|107836365|gb|ABF84234.1| peptide chain release factor RF-2 [Helicobacter pylori HPAG1] Length = 363 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPTLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|150388626|ref|YP_001318675.1| peptide chain release factor 2 [Alkaliphilus metalliredigens QYMF] gi|149948488|gb|ABR47016.1| peptide chain release factor 2 [Alkaliphilus metalliredigens QYMF] Length = 329 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 111/329 (33%), Positives = 169/329 (51%), Gaps = 11/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ D K E + +I Y + +++ +I + + E Sbjct: 1 MSQENFWDDQDKAQEILKEAKMVKDRIEDYQSVIDQTEEVQMMITFTEEGDQTFEKELKE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + L + D S IL I AGTGG +A + L RMY R+A Sbjct: 61 TINQLDVRV---KTMKTATLLQGQYDRFSVILSIHAGTGGLDAQDWAKMLMRMYSRWAEA 117 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + VE+L + + G K + I G + +K E GVHR+ R+ ++SG+ HTS A Sbjct: 118 KGYGVEILDLIQDPEAGIKSVTFLIEGINAYGYLKGEKGVHRLVRISPFDSSGKRHTSFA 177 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE I+V+I D++IDT RASG+GGQHVN TDSAVRITHIPTG++V +++ Sbjct: 178 SVDVMPELDDSIEVEINPNDLKIDTYRASGAGGQHVNKTDSAVRITHIPTGLVVQCQNQR 237 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RIT 317 SQH NR +MK+L+A+L +++ + + + QI G +IR+Y F+ Sbjct: 238 SQHSNRETSMKMLKAKLIELKEREQKEKIEDLQGEYSQIAWG---SQIRSYVFNPYNLAK 294 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR N + ++ V+ G ID IN LT Sbjct: 295 DHRTNTEMGNIQSVMDGDIDLFINEYLTW 323 >gi|289523219|ref|ZP_06440073.1| peptide chain release factor 2 [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503762|gb|EFD24926.1| peptide chain release factor 2 [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 355 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 102/348 (29%), Positives = 177/348 (50%), Gaps = 15/348 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVD--AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L++ + + S + K+T++ + + ++ + + +E + L + Sbjct: 8 DVDTLESEIKALIDKTSSPDFWNSSDAQKVTQKLSHLQDLLGQWQKMKAEWEELEVLTEL 67 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + I + ++ LL + D+ + IL + AG GG +A Sbjct: 68 LNETEDEELIGEFYDKASRLRKEINSM-----EMELLLDEEYDESNAILTVHAGAGGLDA 122 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A ++ +V+ +++ G K I G + +K E G+HR+ Sbjct: 123 QDWAEMLLRMYLRWAERHNYETKVIDILPDEEAGIKYATILIKGICSYGYLKAEKGIHRL 182 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++S R HTS A++ V+PE + D++I E+IR++T RASG+GGQ+VN TDSAV Sbjct: 183 VRISPFDSSKRRHTSFASIEVIPELPDDADIEIRPEEIRMETFRASGAGGQYVNMTDSAV 242 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGD 301 R+ HIPTGI+V +E+SQH NR AM++L+A+LY+ ++ K +IG G Sbjct: 243 RLIHIPTGIVVTCQNERSQHMNRQVAMQLLKAKLYERRQQEKQKMLDDLHGEKKEIGWG- 301 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR+Y + DHR T Y ++ VL G IDD + L + Sbjct: 302 --SQIRSYVLHPYTMVKDHRTGYTSYSVDAVLDGDIDDFVIAYLRMRK 347 >gi|296393116|ref|YP_003658000.1| peptide subunit release factor 1 [Segniliparus rotundus DSM 44985] gi|296180263|gb|ADG97169.1| peptide chain release factor 1 [Segniliparus rotundus DSM 44985] Length = 354 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 141/355 (39%), Positives = 207/355 (58%), Gaps = 19/355 (5%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + +L + ++ R ++ V A K+ + A + P+ + + + + H + Sbjct: 5 LPELIAEYESLQKRWADPSLQDDVSAAKKIGKRVAELGPVYEAHTQREAARADLAAAHEL 64 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + EV + I EL+ + LL P+D D +LE+++G GG E+ Sbjct: 65 AELD------PEFGREEVERLTGRIHELDAALAELLAPRDPHDGDDVVLEVKSGAGGEES 118 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG--------RGVFSRMK 177 ALF GDL RMY ++A R+W+VEVLS +++D GG K+ +I GV++ +K Sbjct: 119 ALFAGDLMRMYTKFAERRRWRVEVLSMAESDLGGVKDATISIKRTGGDQSPANGVWAWLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQH 236 E GVHRVQRVPATE+ GR+HTSAA V PE + I ++RID R+SG GGQ Sbjct: 179 HEGGVHRVQRVPATESQGRIHTSAAGVLAYPEPEDAPDIVIDETELRIDVYRSSGKGGQG 238 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+PTG++V +E+SQ QN+ RAM VL ARL + ++ A E ++ RK Sbjct: 239 VNTTDSAVRITHLPTGLVVTCQNERSQLQNKARAMVVLAARLEQLREEKAAAEAASGRKE 298 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 QI + DRSERIRTYNF + RITDHRI L+ VL+G ++ +++ L +A Sbjct: 299 QIRTVDRSERIRTYNFPENRITDHRIGYKANNLDMVLEGDLEAMLSELRLKLKAD 353 >gi|171058449|ref|YP_001790798.1| peptide chain release factor 2 [Leptothrix cholodnii SP-6] gi|170775894|gb|ACB34033.1| peptide chain release factor 2 [Leptothrix cholodnii SP-6] Length = 300 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 157/304 (51%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 ++ I + +L+ + D + + A E+R + ++ + + + Sbjct: 2 VAAIDHLSSNLADNTELYEMSKDEGDLA-----GITAIEAEVVELRAMIEKLEFRRMFSN 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + L R Y +Y + +K + S+ D G K Sbjct: 57 PADPSNCFIDIQAGAGGTEACDWASMLLRQYLKYCERKGFKTTIEDESEGDTAGIKAATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R ++SG HTS A++ V PE + ++DI D+R Sbjct: 117 KVEGDYAFGHLRTETGVHRLVRKSPFDSSGGRHTSFASLFVYPEVDDSIEIDINPADVRT 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A K LR+RLYD E + Sbjct: 177 DTFRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYDFEMR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + + + K +G G +IR+Y Q RI D R N+ + VL G +D I Sbjct: 237 KRMEAQQKLEDTKTDVGWG---HQIRSYVLDQSRIKDLRTNVETSATQKVLDGDLDAFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|254521932|ref|ZP_05133987.1| peptide chain release factor 2 [Stenotrophomonas sp. SKA14] gi|219719523|gb|EED38048.1| peptide chain release factor 2 [Stenotrophomonas sp. SKA14] Length = 308 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 101/302 (33%), Positives = 152/302 (50%), Gaps = 12/302 (3%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 I+ + +L + + D + ++ + + +LE + D Sbjct: 4 IASVLDGLTDATELLELA-ESEQDEDTALAVVADLDKHQAHVEKLEFQRM----FSGEMD 58 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + + ++I+AG GG+EA + L RMY R+ R WK E++ S D G K + Sbjct: 59 NAAAFVDIQAGAGGTEAQDWAEILLRMYLRWCESRGWKTELMEVSGGDVAGIKSATLRVE 118 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTM 227 G + +K E+GVHR+ R ++ R HTS +V V PE + D+R D Sbjct: 119 GDYAYGWLKTETGVHRLVRKSPFDSDNRRHTSFTSVFVSPEIDDNIDITINPADLRTDVY 178 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG+GGQHVN T+SAVRITHIPT I+V + +SQHQNR AMK+L A+LY++E ++ Sbjct: 179 RSSGAGGQHVNKTESAVRITHIPTNIVVACQTGRSQHQNRDNAMKMLAAKLYELEIQKRN 238 Query: 287 NERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 E+ A K IG G +IR Y Q RI D R + + VL G +D+ + L Sbjct: 239 AEKDAVEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEASL 295 Query: 345 TA 346 A Sbjct: 296 KA 297 >gi|317179435|dbj|BAJ57223.1| peptide chain release factor 2 [Helicobacter pylori F30] Length = 363 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESAELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSTAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|296446781|ref|ZP_06888719.1| peptide chain release factor 2 [Methylosinus trichosporium OB3b] gi|296255656|gb|EFH02745.1| peptide chain release factor 2 [Methylosinus trichosporium OB3b] Length = 322 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E I + I+ ++ + D T++ S+++ + E Sbjct: 1 MRERTQIEDQLGAIARLER---DLDDALTLVELGESENDADTEKEGIAQLEALLKDARER 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +I L D +E+ +G GG+E+ + LFRMY R+A +K+KVEV+ + Sbjct: 58 QIEAL--FSGEADGNDTYIEVHSGAGGTESCDWARMLFRMYARWAERKKFKVEVIEETSG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 D+ G K I G K ESGVHR+ R+ +++ R HTS A+V V P +ID Sbjct: 116 DEAGIKSATLLIKGMNAHGWAKTESGVHRLVRISPFDSNARRHTSFASVWVYPVVDDKID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 + + D RIDT R+SG+GGQHVNTTDSA+RITHIP+GI+V +E+SQH+NR A +L Sbjct: 176 IQVNESDCRIDTYRSSGAGGQHVNTTDSAIRITHIPSGIVVACQAERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ E + K IG G +IR+Y + + D R T Sbjct: 236 RARLYEMELKKREAEANAVEASKTDIGWG---HQIRSYVLQPYQLVKDLRTGHTSGTPSE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L Sbjct: 293 VLDGELDDFMQASLAQR 309 >gi|119715500|ref|YP_922465.1| peptide chain release factor 2 [Nocardioides sp. JS614] gi|119536161|gb|ABL80778.1| bacterial peptide chain release factor 2 (bRF-2) [Nocardioides sp. JS614] Length = 375 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 6/350 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + ++ A++ +++ D T +S + ++ + + DL ++ Sbjct: 28 DLETMRAEIADLGEQVAAPDLWDDQDNATRVTGRLSALQGELDRFTALQGSVDDLAIMVE 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E A E A ++ + L D + I+ IR+G GG +AA Sbjct: 88 MA--QEEGDADALAEAEAELGRLKRSVEALEVRTLLSGEYDAREAIVTIRSGAGGVDAAD 145 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A K+ VEV S ++ G K I + + E+G HR+ R Sbjct: 146 FAEMLMRMYTRWAEQHKYPVEVFDVSYAEEAGIKSAEFAIHAPYAYGTLSVEAGTHRLVR 205 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR TS A V V+P +++I DIR D R+ G GGQ VNTTDSAVR+ Sbjct: 206 ISPFDNQGRRQTSFAAVEVVPVLEQTDEIEIDENDIRTDVFRSGGPGGQSVNTTDSAVRL 265 Query: 247 THIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 THIPTGI+V+ + + V+ ++K + K + +++ Sbjct: 266 THIPTGIVVSCQNEKSQLQNKASAMVVLKAKLLAKKKAEEAALKKDLKGDVA-AAWGDQM 324 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ-AKMIGS 354 R Y + + + D R + + V G +DD I + + A+ + Sbjct: 325 RNYVLNPYQMVKDLRTGYEVGNPQSVFDGDVDDFIEAGIRWRRGAEKAAA 374 >gi|292620387|ref|XP_002664272.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Danio rerio] gi|220679232|emb|CAX12803.1| novel protein similar to H.sapiens MTRF1L, mitochondrial translational release factor 1-like (MTRF1L) [Danio rerio] Length = 431 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 139/353 (39%), Positives = 218/353 (61%), Gaps = 8/353 (2%) Query: 6 HKQICDLKNRFA-EIELRMSESPSVDAYIKLTEE--YAAISPIISKISIYDQKKQEEQDL 62 + + + + S++ +++ T+ ++ ++ I + K++E +D+ Sbjct: 71 QDYLKKKQTEYNTSLNSINSQNQTLEDADMKTQRTNMTILAHLVHNIKKLEVKQKEMEDM 130 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +D E+ +LA+ E A+ +I++L +I LL+P++ D +LE+ AG GG Sbjct: 131 QDLLKD--NDPELLELAETEKEAVLADIQDLRQKILSLLIPEEESDMSELVLEVSAGVGG 188 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA LF ++F MY+ YAA W +VL ++ ++ GG + A++SG + ++KFE+GV Sbjct: 189 QEAMLFTAEIFEMYQNYAAFNGWSFDVLEANASELGGVRHASASVSGPLSYKKLKFEAGV 248 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 HRVQRVP TE+ GR HTS TVA+LP+ EI I +D++I+T RASG+GGQHVNTTDS Sbjct: 249 HRVQRVPKTESKGRTHTSTMTVAILPQPTEISFTINPKDLKIETKRASGAGGQHVNTTDS 308 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH+PTG + E+SQ +N+ AMK+LRA+LY + + R RKLQIG+ Sbjct: 309 AVRITHLPTGTVAECQQERSQIKNKDTAMKLLRAKLYSARLEEETSRRYQARKLQIGTRG 368 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMI 352 RSE+IRTYNF Q RITDHRI T++ + LQG ++++I L + + + Sbjct: 369 RSEKIRTYNFQQDRITDHRIGKTVHDVHGFLQGEELLEEMIVFLQQFSEQESL 421 >gi|297379396|gb|ADI34283.1| peptide chain release factor 2 [Helicobacter pylori v225d] Length = 363 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSTAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILESVLIA 361 >gi|227112636|ref|ZP_03826292.1| peptide chain release factor 2 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 293 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + D + ++ + + D C Sbjct: 3 QGLEDVNGLLELAVEEDDEETFNDTTVE-----LDALENKLGQLEFRRMFSGQYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A + +K E++ SD D G K I G F Sbjct: 58 LDIQAGSGGTEAQDWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTKSATIKIIGDYAF 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 291 >gi|217967791|ref|YP_002353297.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724] gi|217336890|gb|ACK42683.1| peptide chain release factor 2 [Dictyoglomus turgidum DSM 6724] Length = 330 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 176/318 (55%), Gaps = 7/318 (2%) Query: 29 VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEK 88 D K+ + + +I +++ K + ++L E ++ + ++ +EK Sbjct: 8 WDNSEKVKPILTKFNKLQKEIESWEKLKTDIEELSEWKDLLEEGDEYKEEFEKKLKEVEK 67 Query: 89 EIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVE 148 ++ E ++ +D D+ + +L + AGTGG++A + L RMY R+A + ++V+ Sbjct: 68 SLKNFEI----EMVLQDPHDEANAVLSLHAGTGGTDAQDWTEILLRMYIRWAERKGYQVK 123 Query: 149 VLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP 208 +L S ++ G K I G + +K E GVHR+ R+ +A+ R HTS A V V+P Sbjct: 124 ILDISPGEEAGIKSATLLIEGDKAYGYLKGEKGVHRLVRISPFDANHRRHTSFALVEVIP 183 Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E E ++I ED++I+T RA G+GGQHVN +SAVRITHIPTGI+V +E+SQH N+ Sbjct: 184 ELPESTIEIKPEDLKIETFRAGGAGGQHVNKVESAVRITHIPTGIVVQCQNERSQHANKE 243 Query: 268 RAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLY 326 A++VL+ARL ++E ++ + ++ K ++ +IR+Y F + DHR L + Sbjct: 244 MALRVLKARLEELEERKRREKIASL-KGEVQEISWGNQIRSYVFHPYTLVKDHRTGLEIG 302 Query: 327 KLEYVLQGYIDDIINPLL 344 ++ V+ G ID I L Sbjct: 303 NVQAVIDGEIDPFIEAYL 320 >gi|255716670|ref|XP_002554616.1| KLTH0F09482p [Lachancea thermotolerans] gi|238935999|emb|CAR24179.1| KLTH0F09482p [Lachancea thermotolerans] Length = 400 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 133/363 (36%), Positives = 205/363 (56%), Gaps = 15/363 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L K+ +E M++ + ++++ + ++ Y ++ + +DL Sbjct: 34 LLLKRAEKYAEELKALEKWMAKGEGTFDVER-QKKFSRLCAVVDSFHRYSREIELLKDLQ 92 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ D D +RD AQ E+ I ++ + + + LLP D+ CILEIR G GG Sbjct: 93 DMMKD---DPSLRDEAQQEMAEIRPQLEKTSSSLLGQLLPPHPFADRPCILEIRPGVGGI 149 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGV 182 EA +F DL MY YA ++WK ++S S N+ G G + + +I G + +++FE+GV Sbjct: 150 EAMIFAQDLLGMYINYAHNKRWKYHIISQSANESGSGIVDAILSIDEPGSYDKLRFEAGV 209 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGG 234 HRVQR+PATE GR HTS A V VLP+ + ++IRID MRA G GG Sbjct: 210 HRVQRIPATETKGRTHTSTAAVVVLPQMAEDNEKEAESYERTFKPDEIRIDVMRARGKGG 269 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVNTTDSAVR+TH P+GI++ +E+SQH+N+ +A +LRARL ++E+K + A R Sbjct: 270 QHVNTTDSAVRLTHYPSGIVINMQNERSQHKNKAKAFAILRARLAEIEQKAKEEKARAAR 329 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 K Q+ + DRS+++RTYNF Q RITDHR L+ +E ++ G +DD+I+ + Sbjct: 330 KGQVSTTDRSDKVRTYNFPQNRITDHRCGFNLHDMEGIMAGERLDDVIDAMQIYDSDTRA 389 Query: 353 GSA 355 Sbjct: 390 KEL 392 >gi|121602405|ref|YP_989094.1| peptide chain release factor 2 [Bartonella bacilliformis KC583] gi|120614582|gb|ABM45183.1| peptide chain release factor 2 [Bartonella bacilliformis KC583] Length = 376 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 117/342 (34%), Positives = 167/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R + + + D + E ++ I+ I ++ QK +E +L + + Sbjct: 30 KRLEYLNQKAEDPSLWDNAQQAQDMMRERQSLEDSINSIELFTQKLEESIELIAMGEEER 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 I D + + +L D LEI AG GG+E+ + Sbjct: 90 DVDVIADAENTIRELKNEIDK-----RQIDILLSGEADSNDTYLEIHAGAGGTESQDWAA 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ K KVEVL +D ++ G K I G + +K ESGVHR+ R+ Sbjct: 145 MLLRMYIRWVEQHKMKVEVLEINDGEEAGIKSATILIKGHNAYGMIKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V P I VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI Sbjct: 205 YDSNARRHTSFASVWVYPVVDDNIKVDVSESDVRIDTYRASGAGGQHVNTTDSAVRITHI 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERI 306 TGI+V +E+SQH+NR A +LRARLY+ E K+ E + K +IG G +I Sbjct: 265 KTGIVVQCQTERSQHKNRATAWSMLRARLYEEELKKREEETNAVEASKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R + + VL G +D I L Sbjct: 322 RSYVLQPYQLVKDLRTGIENTDPQSVLNGDLDRFIEAALAQR 363 >gi|188526975|ref|YP_001909662.1| peptide chain release factor 2 [Helicobacter pylori Shi470] gi|238691887|sp|B2US00|RF2_HELPS RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|188143215|gb|ACD47632.1| peptide chain release factor 2 [Helicobacter pylori Shi470] gi|308061460|gb|ADO03348.1| peptide chain release factor 2 [Helicobacter pylori Cuz20] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSTAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|183981542|ref|YP_001849833.1| peptide chain release factor 2 PrfB [Mycobacterium marinum M] gi|238689234|sp|B2HGJ2|RF2_MYCMM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|183174868|gb|ACC39978.1| peptide chain release factor 2 PrfB [Mycobacterium marinum M] Length = 371 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 162/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + +S ++ ++ ++ +DL + Sbjct: 24 DVEGLRSRIEKLEHEASDPKLWDDQTRAQRVTSELSHTQGELRRVEELRRRLEDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI-RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + E + R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEEGAAAGEALAEADAEFKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYVRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 264 LTHIPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLERKRIEERAELDAL-KGDGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPATVLDGDIDGFLEAGIRWRNRK 368 >gi|313204692|ref|YP_004043349.1| bacterial peptide chain release factor 2 (brf-2) [Paludibacter propionicigenes WB4] gi|312444008|gb|ADQ80364.1| bacterial peptide chain release factor 2 (bRF-2) [Paludibacter propionicigenes WB4] Length = 368 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 84/372 (22%), Positives = 159/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ ++ R E ELR D + + + Sbjct: 1 MITIDQLKNVLERESALRRYLDVDTKLIQIEEEELRTQVPGFWDDAKAAEAQMRKVKELK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + ++ Y+ K +L + ++ + + + +E + Sbjct: 61 NWVTGYNAVKTAADELQLAFDFYKEEAVSEEEVDEAYRHAMELLENIE----MKNMLSHE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +++I G GG+EA + LFRMY+R+ + + E+ + + D+ G K + Sbjct: 117 EDKLGAVIKIVGGAGGTEAQDWASMLFRMYQRWCERQGYACEITNLQEGDEAGIKTVTMQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS +V V+P I++++ + D Sbjct: 177 IEGEMAYGYLKSENGVHRLVRVSPFNAQGKRMTSFTSVYVVPLVDDTIEIEVNPGMLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVTS---------SEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN ++ VR+ + + +SQ N+ A+++L+++ Sbjct: 237 TFRSSGAGGQNVNKVETGVRLHYKFVNPVTNQPDEIVIENTESRSQFGNKDNAIRLLKSQ 296 Query: 277 LYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LY++E ++ + K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYELELEKRRAATAVVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSNVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 DIDAFIKAYLME 365 >gi|109946962|ref|YP_664190.1| peptide chain release factor 2 [Helicobacter acinonychis str. Sheeba] gi|123066315|sp|Q17YT5|RF2_HELAH RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|109714183|emb|CAJ99191.1| peptide chain release factor RF-2 [Helicobacter acinonychis str. Sheeba] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K + IE + +K +E ++ ++ E +L + Sbjct: 27 EKVKQKLERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNALDESVELFEIA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHGVQKVEIEIMLSGEHDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSTAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|261837620|gb|ACX97386.1| peptide chain release factor RF-2 [Helicobacter pylori 51] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|167586751|ref|ZP_02379139.1| peptide chain release factor 2 [Burkholderia ubonensis Bu] Length = 248 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ Sbjct: 61 NATVKVSGEYAYGFLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|295836903|ref|ZP_06823836.1| peptide chain release factor 2 [Streptomyces sp. SPB74] gi|295826265|gb|EFG64762.1| peptide chain release factor 2 [Streptomyces sp. SPB74] Length = 371 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 92/354 (25%), Positives = 154/354 (43%), Gaps = 13/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQDLHT 64 + ++ A +E + + D + + +S + + K + + L Sbjct: 25 DLGKMREDIASLEEQAAAPSLWDDPDAAQKITSKLSHLQAEVRKAEGLRGRIDDLGVLFE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + Q + L D + ++ IRA GG + Sbjct: 85 LAADEGDADTQEEAEQELAAVRKALDEM-----EVRTLLSGEYDSREAVVTIRAEAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+ F L RMY R+A +K E+ +S ++ G K + + + E G HR Sbjct: 140 ASDFAERLQRMYLRWAERLGYKTELYETSYAEEAGIKSTTFAVHTPYAYGTLSVEQGTHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A V VLP ++I ++R+D R+SG GGQ VNTTDSA Sbjct: 200 LVRISPFDNQGRRQTSFAGVEVLPVVEQTDHIEIDESELRVDVYRSSGPGGQGVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+TH+PTGI+V +E+SQ QN+ AM VL+A+L + R+ + +A + G Sbjct: 260 VRLTHLPTGIVVSCQNERSQIQNKATAMNVLQAKLLERRRQEEQEKMNALKGD--GGNSW 317 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 ++R+Y + + D R + E V G ID + + + + SA Sbjct: 318 GNQMRSYVLHPYQMVKDLRTEHEVGNPEAVFNGEIDGFLEAGIRWRKQQEQQSA 371 >gi|254778885|ref|YP_003056990.1| peptide chain release factor 2 [Helicobacter pylori B38] gi|254000796|emb|CAX28720.1| Peptide chain release factor 2 (RF-2) [Helicobacter pylori B38] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKDSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|255327042|ref|ZP_05368118.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296] gi|255296259|gb|EET75600.1| peptide chain release factor 2 [Rothia mucilaginosa ATCC 25296] Length = 375 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 168/353 (47%), Gaps = 6/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I ++ ++ + + D + +A+S S+++ D+ ++ Sbjct: 25 DIEGIERAIEDLSAQAAAPDLWDDVENAQKVTSALSYKQSELNRLRSLSSRIDDVEVMVE 84 Query: 68 DHNSDSEIRDLAQ-IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ E + EIR E+ L+L D + ++ IR+G GG +AA Sbjct: 85 LAEAEDEETAAELLADAERECAEIRAKLEELEVLVLLSGEYDQREAVVTIRSGAGGVDAA 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + +VL +S ++ G K + ++ F R+ E+G HR+ Sbjct: 145 DFAEMLLRMYLRWAEKNGYPTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P ++IP +I++D R+SG GGQ VNTTDSAVR Sbjct: 205 RISPFDNQGRRQTSFAAVEVIPLIEQTDAIEIPESEIKVDVFRSSGPGGQSVNTTDSAVR 264 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +TH+PTGI+V+ +EKSQ QNR A++VL++RL + +++ ++ S + Sbjct: 265 MTHLPTGIVVSMQNEKSQLQNRAAALRVLQSRLLLLRKEQEDAKKKELAGDIKAS--WGD 322 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ++R+Y + + D R VL G ++ I+ + + S Sbjct: 323 QMRSYVLHPYQMVKDLRTGYEEGNTSNVLDGGLNAFIDAGIRWRASGRAAEES 375 >gi|259909551|ref|YP_002649907.1| peptide chain release factor 2 [Erwinia pyrifoliae Ep1/96] gi|224965173|emb|CAX56705.1| peptide chain release factor 2 [Erwinia pyrifoliae Ep1/96] Length = 293 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 100/297 (33%), Positives = 158/297 (53%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + +K + + + D C Sbjct: 3 QGLEDVSGLLELAVEAEDEETFNEAVNELDGLDKKLGE-----LEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 ++I+AG+GG+EA + L RMY R+A + +K E++ SD + G K I G F Sbjct: 58 MDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGEVAGTKSATIKIIGDYAF 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++V + PE ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDNIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER-- 289 GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ E ++ ++ Sbjct: 178 GGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQKKNADKQT 237 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + + K IG G +IR+Y RI D R ++ + VL G +D I L A Sbjct: 238 AEDNKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 291 >gi|261491637|ref|ZP_05988220.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261494996|ref|ZP_05991465.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261309405|gb|EEY10639.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2 str. OVINE] gi|261312763|gb|EEY13883.1| peptide chain release factor 2 [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 304 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 165/309 (53%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + I++ I +Q ++ + L + + + E+ + ++ + Sbjct: 2 LEQIVNTIKALEQGIEDVEGLIELAVEAEDQDTFNEAQVE-----ADELEKKLADLEFKR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+++AG+GG+EA + L RMY R+A + +K E++ +SD D G K Sbjct: 57 MFSGPHDSADCYLDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKAELMEASDGDVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 ISG + + E+G+HR+ R +A+ HTS + V PE +ID++I Sbjct: 117 SATVKISGDYAYGWFRTETGIHRLVRKSPFDANNGRHTSFSAAFVYPEVDDDIDIEINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ +AMK L+A+LY+ Sbjct: 177 DLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQAMKQLKAKLYE 236 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E + E+ + K IG G +IR+Y RI DHR + + VL G +D Sbjct: 237 LEMSKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDHRTGVEHRTTQQVLDGDLD 293 Query: 338 DIINPLLTA 346 + L A Sbjct: 294 KFVEASLKA 302 >gi|187777237|ref|ZP_02993710.1| hypothetical protein CLOSPO_00784 [Clostridium sporogenes ATCC 15579] gi|187774165|gb|EDU37967.1| hypothetical protein CLOSPO_00784 [Clostridium sporogenes ATCC 15579] Length = 325 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 173/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + +SK + ++ L ++ + + D L+ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLSKYNHLKNTIEDIIGLSQMLSEEDDDMGKEILS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEEIDRFKIE------TLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL++RL +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSRLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDAVMNGDINIFIIEYLK 322 >gi|317013590|gb|ADU81026.1| peptide chain release factor 2 [Helicobacter pylori Gambia94/24] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSTKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|269792424|ref|YP_003317328.1| peptide chain release factor 2 [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100059|gb|ACZ19046.1| bacterial peptide chain release factor 2 (bRF- 2) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 374 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 103/352 (29%), Positives = 178/352 (50%), Gaps = 15/352 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVD--AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L + E+ R+S + ++ E + + S +++ ++ + L + Sbjct: 25 DLEGLDRKIGELMERVSSDGFWEREDSTEVARELSQLQQRRESFSALEREMEDLETLAEL 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + R+ E+ L L + D I+ I AG GG ++ Sbjct: 85 LQAGEDEDLSREF-----YDRAAEMERRLERTQVLTLLDEEYDRSDAIVGIHAGAGGLDS 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+A +KV VL + + G K + +SG + +K E GVHR+ Sbjct: 140 QDWAEMLYRMYVRWAERNGFKVRVLDELPDQEAGIKSVTFQVSGEYAYGYLKGERGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS A+V V+P +++++I EDI++DT RASG+GGQ+VN TDSAV Sbjct: 200 VRISPFDAAKRRHTSFASVEVMPVLPDDVEIEIRPEDIKMDTFRASGAGGQYVNMTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGD 301 RITHIPTGI+V E+SQH NR A+++L+++L++ + + + A K I G Sbjct: 260 RITHIPTGIVVSCQVERSQHMNRATALQMLKSKLFERQLRERQEQLEAIQGEKRAISWG- 318 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 +IR+Y + + DHR + ++ VL G +DD++ L ++ + Sbjct: 319 --SQIRSYTLQPFQLVKDHRSGCEIGNVQAVLDGDLDDLMMAYLKFYKTGRL 368 >gi|308183967|ref|YP_003928100.1| peptide chain release factor 2 [Helicobacter pylori SJM180] gi|308059887|gb|ADO01783.1| peptide chain release factor 2 [Helicobacter pylori SJM180] Length = 363 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 ERIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|261338116|ref|ZP_05966000.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093] gi|270276738|gb|EFA22592.1| peptide chain release factor 2 [Bifidobacterium gallicum DSM 20093] Length = 376 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 107/354 (30%), Positives = 174/354 (49%), Gaps = 11/354 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+++ A++E +E D + + +S + S++ D+ T++ Sbjct: 25 DVNRLQSQAAQLEQEAAEPGLWDDPEHAQKVTSKLSAVQSQLKHLASAASRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +D + D AQ EV +I ++R++E + D++S ++ IR+G GG +A Sbjct: 85 LGREEADQDTLDEAQSEVESITNDLRDMEIQTLM----DGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRWAERNGYKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P A +++P +IR+DT ASG GGQ VNTT SAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPLVEATDHIEVPESEIRVDTYCASGPGGQGVNTTYSAV 260 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 261 RITHIPTGIVVTMQDERSQIQNRAAAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +++R+Y + + D R + + V G ID I + + SA Sbjct: 319 DQMRSYVLHPYQMVKDLRTGEETSQTQAVFDGDIDAFIQAGIRWRHEQRRESAE 372 >gi|255542882|ref|XP_002512504.1| peptide chain release factor, putative [Ricinus communis] gi|223548465|gb|EEF49956.1| peptide chain release factor, putative [Ricinus communis] Length = 550 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 99/352 (28%), Positives = 168/352 (47%), Gaps = 19/352 (5%) Query: 6 HKQI--CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQ 60 K++ L R + +++++ D + K++ E+ ++ +++ ++++ E Sbjct: 150 KKRLQWKKLMVRLDLLSVQLNKPDLWDDPVLAGKISREHGSLMAKRKEVTAFERELLEHI 209 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 D+ + + + + + L D SC +E+++G Sbjct: 210 DMIKLAREEDDAELESESLKALFHMRRNSKE-----KELEALLAGEQDSCSCYIEVQSGA 264 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG+E+ + + +MY+ +A R + V V+ + G K + G F K E Sbjct: 265 GGTESMDWAKMVMQMYKLWAQRRGYNVTVVDEMPGEIAGIKRATIKVDGEYAFGYAKAEV 324 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++ R HTS A VAV+P V I D+RI+ R+ G GGQH N Sbjct: 325 GVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGSTHVQINESDLRIERYRSGGPGGQHAN 384 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL-- 295 TT+SAVRI HIPTG+ +E+SQH N+ AM VL++RL +E R A + + + Sbjct: 385 TTESAVRIVHIPTGVTATCQNERSQHMNKASAMAVLQSRLDQLEMARQAQMNAQHTQSLT 444 Query: 296 QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G+ +IRTY R + D R N + + VL+G ID I L+A Sbjct: 445 EISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGEIDGFILSYLSA 493 >gi|288575018|ref|ZP_06393375.1| peptide chain release factor 2 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570759|gb|EFC92316.1| peptide chain release factor 2 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 336 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 102/340 (30%), Positives = 164/340 (48%), Gaps = 17/340 (5%) Query: 15 RFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 R EI M+ D +++ + A + IS + Q+ L ++ + + Sbjct: 7 RLHEI---MALPDFWGRDDAQRISTDLARLESRISSWDRMSSEYQDLVVLAELLDEEDDQ 63 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + + + LL D + I+ + AG+GG ++ + L Sbjct: 64 ELEAEFFSRSESLSKSMDA-----FSMELLLNGDYDGNNAIMTVHAGSGGLDSQDWAEML 118 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 +RMY R+ +K ++L +++GG K + + G + ++ E GVHR+ R+ + Sbjct: 119 YRMYLRWCESNHYKTKILDYQRDEEGGIKTVTLLVEGDFAYGYLQSEVGVHRLVRISPFD 178 Query: 193 ASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS A+V V +++VDI ED+RIDT RASG+GGQHVN TDSAVRITHIPT Sbjct: 179 TAKRRHTSFASVDVAPELPDDVEVDIRTEDLRIDTFRASGAGGQHVNMTDSAVRITHIPT 238 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR-KLQIGSGDRSERIRTY 309 GI+V +E+SQH N+ AM+VLR +LY+ + + K +I G+ +IR+Y Sbjct: 239 GIVVSCQNERSQHMNKAVAMQVLRGKLYERSMSERQDTLDSLHDKKEISWGN---QIRSY 295 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + DHR VL G ++ I L + Sbjct: 296 VLHPYTMVKDHRTGEETGNAAAVLDGDLERFILSYLRWRK 335 >gi|161524328|ref|YP_001579340.1| peptide chain release factor 2 [Burkholderia multivorans ATCC 17616] gi|189350916|ref|YP_001946544.1| peptide chain release factor 2 [Burkholderia multivorans ATCC 17616] gi|160341757|gb|ABX14843.1| peptide chain release factor 2 [Burkholderia multivorans ATCC 17616] gi|189334938|dbj|BAG44008.1| peptide chain release factor 2 [Burkholderia multivorans ATCC 17616] Length = 248 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V+I Sbjct: 61 NATIKVSGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AELRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|296435987|gb|ADH18161.1| peptide chain release factor 2 [Chlamydia trachomatis G/9768] gi|296437848|gb|ADH20009.1| peptide chain release factor 2 [Chlamydia trachomatis G/11074] gi|297140348|gb|ADH97106.1| peptide chain release factor 2 [Chlamydia trachomatis G/9301] Length = 334 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 173/334 (51%), Gaps = 11/334 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D ++ + I+ + ++S +++ K + + + D S ++ Sbjct: 2 EQQAVQDGFWDDVVRAGKISERIARLKQQLSEFNELKNKVSAIQFFLEDEESSKDLEMQK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++E + E + E L L D SC L I AG GG+E+ +V L RMY R+ Sbjct: 62 ELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWVEMLLRMYMRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ W++EV+ D + G K I + G + K ESGVHR+ R+ +++ + HT Sbjct: 120 ASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSNAKRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI+V Sbjct: 180 SFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGIVVSCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG- 314 +E+SQ QNR M +L AR+Y + +++ +RK ++ G +IR Y F Sbjct: 240 NERSQIQNREACMNMLCARIYQKLLQERLEKQNIDRKNKKEVSWG---SQIRNYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R + ++ ++ G +D I L + Sbjct: 297 LVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 330 >gi|331270416|ref|YP_004396908.1| peptide chain release factor 2 [Clostridium botulinum BKT015925] gi|329126966|gb|AEB76911.1| peptide chain release factor 2 [Clostridium botulinum BKT015925] Length = 327 Score = 204 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 112/331 (33%), Positives = 172/331 (51%), Gaps = 10/331 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ES D K E + +I Y K +DL +I + + + +I Sbjct: 1 MQESNFWDDINKAQEVTQEAKGLKDRIDKYSNTKNRLEDLKILIEMSIEEDDESSVEEIL 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E +I E + L D + I+ + AG GG++A + L RMY R++ Sbjct: 61 NEVKEIQIIIDEFRVQIL--LSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWSET 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE L D+ G K I+G + +K E G+HR+ R+ A+G+ TS A Sbjct: 119 KGYKVETLDILPGDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ +LPE D++I +D+RIDT RASG+GGQH+N TDSAVRITHIPTGI+V + SE+ Sbjct: 179 SLEILPELTESQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG-RIT 317 SQ QN+ AM +L+++L +++ + + +IG G +IR+Y F + Sbjct: 239 SQFQNKDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEIGWG---SQIRSYVFQPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR N + +E V+ G ID I L A++ Sbjct: 296 DHRTNTEMGNVEAVMDGDIDIFIIEYLKANK 326 >gi|315121916|ref|YP_004062405.1| peptide chain release factor 2 [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495318|gb|ADR51917.1| peptide chain release factor 2 [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 354 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 106/353 (30%), Positives = 170/353 (48%), Gaps = 18/353 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R + + + + L E + +S + + + L + Sbjct: 11 DNALKRLHFLNDKAENPNLWEKVEEAKILMRERQHLDNAVSSLKALQDRLDDNIALLDLA 70 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N+ S +++ + L D LE+ AG GG+E+ Sbjct: 71 VEENNSSVLQESLDNLKQLKLDT-----EYKQFESLFSGEADSNDVYLEVHAGAGGTESQ 125 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R++ RK+K+++L D ++ G K I G + +K E GVHR+ Sbjct: 126 DWANMLVRMYIRWSERRKFKIDLLEVHDGEEAGIKSATLLIKGPNAYGWLKEEQGVHRLV 185 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS ++V V P E +++I D RIDT RASG+GGQHVNTTDSAVR Sbjct: 186 RISPYDSNSRRHTSFSSVWVYPVVDESIEIEINESDCRIDTYRASGAGGQHVNTTDSAVR 245 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITHIPTG++V E+SQH+N+ +A +LRA+LYD+E ++ + K +IG G Sbjct: 246 ITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYDLELQKREEIANIGESSKTEIGWG-- 303 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +IR+Y + + D R N+ VL G +DD + L K + + Sbjct: 304 -RQIRSYVLQPYQMVKDLRTNIEKSSPLDVLNGDLDDFMKAALA--LKKQLKA 353 >gi|308063032|gb|ADO04919.1| peptide chain release factor 2 [Helicobacter pylori Sat464] gi|317176986|dbj|BAJ54775.1| peptide chain release factor 2 [Helicobacter pylori F16] Length = 363 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 101/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESTELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSTAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|329767964|ref|ZP_08259475.1| peptide chain release factor 2 [Gemella haemolysans M341] gi|328838449|gb|EGF88057.1| peptide chain release factor 2 [Gemella haemolysans M341] Length = 372 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 185/350 (52%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I + + R AEIE M E+ + + I ++ + + + ++ Sbjct: 25 KIEEKEQRVAEIENMMLEADFWNDSETASLLVTESKSIKKELDEFSEMIDYLEHSEEMVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + ++L ++ + ++ LL + D+ + ILEI AG GG++A Sbjct: 85 FLKDEDD--EEIYQDLLETVVNLKSSVEDFSFRLLFSEEYDNNTAILEIHAGAGGTDATD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMYER+ + K L+ D G K + G + +K E GVHRV R Sbjct: 143 WSELMLRMYERFFTKQGLKYSYLNYQSGDITGVKSATIKVEGDFAYGLLKGEKGVHRVVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + SG+ HTS A++ V+PE + +++I ED++IDT RA G+GGQH+NTTDSAVR Sbjct: 203 ISPFDPSGKRHTSFASIDVIPEFNDDEINIEINNEDLKIDTYRAQGAGGQHINTTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDR 302 ITH+PTGI+V + +E+SQ +N+ AMK L+++LY +E + E +A R Q IG G Sbjct: 263 ITHLPTGIVVQSQAERSQIKNKDAAMKNLKSKLYQLEIEEKERELAAIRGEQKDIGWG-- 320 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F+ + DHR N + ++ V+ G I D I+ L + + Sbjct: 321 -SQIRSYVFTPYTMVKDHRTNYEVSTVDKVMDGEIIDFIDAYLHYNMKEK 369 >gi|134104518|pdb|2IHR|1 Chain 1, Rf2 Of Thermus Thermophilus Length = 365 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+E R+ + + K+++E A + + + Q +L Sbjct: 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELME 77 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ +L + E + L +K+ IL I+ G GG+E Sbjct: 78 ELPAEEREALKPELEEAAKKLDELYHQTL---------LNFPHAEKNAILTIQPGAGGTE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VEV+ + + G + G + + E+GVHR Sbjct: 129 ACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +ASGR HTS A + E++V + E++RID MRASG GGQ VNTTDSA Sbjct: 189 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 248 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V + +SQ +N+ A+K+L+ARLY++ERK+ E A R ++ + Sbjct: 249 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVRPIEW 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR L + E VL G + D+I L + Sbjct: 308 GSQIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 356 >gi|311743767|ref|ZP_07717573.1| peptide chain release factor RF2 [Aeromicrobium marinum DSM 15272] gi|311312897|gb|EFQ82808.1| peptide chain release factor RF2 [Aeromicrobium marinum DSM 15272] Length = 371 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 99/350 (28%), Positives = 163/350 (46%), Gaps = 15/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHT 64 + ++ AE++ ++ D + + + K++ Q+ + + LH Sbjct: 25 DLDAMRKEIAELQEQVGAPDLWDDQANAQRVTGRLSVLQAEVDKVTGLRQRLDDLELLHE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D+ + D A V + + L D + ++ IR+G GG + Sbjct: 85 MALEEGDDASVADAAAELVRVHKSIEA-----LEVRTLLSGEYDMRDALVSIRSGAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AA F L RMY R+A + VE+ S ++ G K + + + ESG HR Sbjct: 140 AADFALMLQRMYIRWAERHGYTVEIYDVSYAEEAGLKSTTFAVKAPYAYGTLSVESGTHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + GR TS A + V+P ++D+P E+IR+D R+SG GGQ VNTTDSA Sbjct: 200 LVRISPFDNQGRRQTSFAAIEVVPVLEQTDEIDVPDEEIRVDVYRSSGPGGQSVNTTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL-QIGSGD 301 VR+THIPTG +V +EKSQ QN+ AM +L+A+L +++ R Q GD Sbjct: 260 VRLTHIPTGTVVSCQNEKSQLQNKASAMVILKAKLLALKKAEERAHLDELRGDVQASWGD 319 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R Y + + + D R + VL G IDD I + + + Sbjct: 320 ---QMRNYVLNPYQMVKDLRTEHESGNTQGVLDGEIDDFIEAGIRWRREQ 366 >gi|328955235|ref|YP_004372568.1| bacterial peptide chain release factor 2 (bRF-2) [Coriobacterium glomerans PW2] gi|328455559|gb|AEB06753.1| bacterial peptide chain release factor 2 (bRF-2) [Coriobacterium glomerans PW2] Length = 383 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 106/347 (30%), Positives = 166/347 (47%), Gaps = 13/347 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + + R E+E R + D + EE + +S + + + + Sbjct: 29 LDEKRERIVELEQRSARPDFWDDGERARAVMEELSCARDDVSGVERARTRLADAVAALQL 88 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + E +LA A + RE+ +++ D S I+ I+ G GG EA Sbjct: 89 ASELEHGDEADELAAEATAAASELTREI-DQMELSSWFTGEFDHGSAIITIKPGQGGLEA 147 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + LF+MY +Y R WKV V D G T+ G+ F ++ E+GVHR+ Sbjct: 148 QDWTFMLFKMYMKYCERRGWKVTVNDCPPADVIGIDRATFTVEGKDAFGMLRAEAGVHRL 207 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ T+ R T+ A V V+P +IDV+I DIR+D ASG GGQ VNTTDSAV Sbjct: 208 VRISPTDDKKRRQTTFAGVEVIPVLPDDIDVEIDPTDIRVDVYHASGPGGQGVNTTDSAV 267 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 R+TH+PTGI+V +E+SQ QN+ M++L++RL+++E ++ R K IG G+ Sbjct: 268 RVTHLPTGIVVTCQNERSQIQNKAACMQILKSRLFELELEKREEALDEIRGPKHTIGFGN 327 Query: 302 RSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTA 346 +IR+Y + + D R + + VL G +D I Sbjct: 328 ---QIRSYVLYPYQMVKDLRSGVETGNVASVLEDGDLDPFIIGYHRW 371 >gi|254479978|ref|ZP_05093226.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2148] gi|214039540|gb|EEB80199.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2148] Length = 310 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 106/315 (33%), Positives = 165/315 (52%), Gaps = 12/315 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E +++ I+ I + + DL + D + E+ A+ ++ LE Sbjct: 1 MGRERSSLETIVLTIEKLEGGATDAADLLEMAA-AEDDQDTLTEVISEIDALVAQLERLE 59 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + D + L+I++G+GG+EA + + RMY R+ + +K +++ +S Sbjct: 60 ----FRRMFDGEMDANNAFLDIQSGSGGTEAQDWAEMMLRMYLRWGEAKGFKTQLMEASA 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D G K G F ++ E+GVHR+ R ++ R HTS ++V V PE + Sbjct: 116 GDVAGIKSATIKFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSSVFVSPEIDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +++I D+R+DT RASG+GGQHVN TDSAVR+TH PTGI V +E+SQHQNR AMK+ Sbjct: 176 EIEINPADLRVDTYRASGAGGQHVNKTDSAVRLTHNPTGIAVQCQTERSQHQNRDNAMKL 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E + E+ A K IG G +IR+Y RI D R + + Sbjct: 236 LRAKLYEMEMLKRNEEKQAMEDGKADIGWG---SQIRSYVLDDARIKDLRTGVETRNTQA 292 Query: 331 VLQGYIDDIINPLLT 345 VL G +D I L Sbjct: 293 VLDGSLDQFIEASLK 307 >gi|254447294|ref|ZP_05060761.1| peptide chain release factor 2 [gamma proteobacterium HTCC5015] gi|198263433|gb|EDY87711.1| peptide chain release factor 2 [gamma proteobacterium HTCC5015] Length = 300 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + + DL + + D E + ++ + + LE + + Sbjct: 2 VRGLDRITSGLGDAGDLIEMAKEE-GDEETLAAVEDDIAELTDAVENLE----FRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D+K+ L+I+AG+GG+EA + L RMY R+ +K E++ S+ D G K Sbjct: 57 EMDEKNAYLDIQAGSGGTEAQDWANMLLRMYLRWCDQHGFKNEIVELSEGDVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G F ++ E+GVHR+ R ++ GR HTS A+V + PE D+DI D+R+ Sbjct: 117 HIQGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFASVFLSPEVDDSFDIDINPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT R+SG+GGQHVNTTDSAVRITH P+G++V +++SQH NR AMK L+A+L+++E + Sbjct: 177 DTYRSSGAGGQHVNTTDSAVRITHAPSGVVVSCQNQRSQHANRDFAMKQLKAKLWELEMQ 236 Query: 284 RMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + + + + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 KRNAVKQEAEDNKADIGWG---SQIRSYVLDASRIKDLRTGVETGNTQAVLDGSLDPFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|134296298|ref|YP_001120033.1| peptide chain release factor 2 [Burkholderia vietnamiensis G4] gi|134139455|gb|ABO55198.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia vietnamiensis G4] Length = 248 Score = 203 bits (517), Expect = 2e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ Sbjct: 61 NATIKVSGEYAYGFLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|225450605|ref|XP_002277995.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 434 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 169/354 (47%), Gaps = 19/354 (5%) Query: 4 LSHKQI--CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 L K++ L R + ++++ D + K++ E+ + + + +Q+ E Sbjct: 78 LIKKRLQWKKLVVRLDVLSAQLNKPDLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLE 137 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D+ + + N + + + L D SC +E++A Sbjct: 138 HIDMVKLAREENDPELESESLKALLGMRRNSKE-----KELEALLAGDHDSCSCYIEVQA 192 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+E+ + + +MY+ +A R + V V+ + G K + G F K Sbjct: 193 GAGGTESMDWAAMVMQMYKMWAQRRGYGVTVVDEMPGETAGIKRATIKVDGEYSFGYAKA 252 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E GVHR+ R+ ++ R HTS A VAV+P A V I D+RI+ RA G+GGQH Sbjct: 253 EVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDASSHVQINESDLRIERFRAGGAGGQH 312 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SAVRI HIPTG+ +E+SQHQN+ AM VL++RL +E R A + + + Sbjct: 313 VNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEISRQAQINAQHTQS 372 Query: 296 --QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I G+ +IRTY R + D R N + + VL+G +D I L+A Sbjct: 373 LTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 423 >gi|168185950|ref|ZP_02620585.1| peptide chain release factor 2 [Clostridium botulinum C str. Eklund] gi|169295927|gb|EDS78060.1| peptide chain release factor 2 [Clostridium botulinum C str. Eklund] Length = 326 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 173/331 (52%), Gaps = 10/331 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ES D K E + +I Y+ K +DL +I + + + +I Sbjct: 1 MQESDFWDDINKAQEITQEAKGLKDRIDGYNNTKTRIEDLEVLIEISIEEEDESSIEEIL 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E EI ++ +L D + I+ + +G GG++A + L RMY R+A Sbjct: 61 NEIKEIEIII--DDFKVQILLSGEYDKNNAIVSLHSGAGGTDAQDWTEMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KV+ + D+ G K I+G + +K E G+HR+ R+ A+G+ TS A Sbjct: 119 KGYKVDTIDILPGDEAGIKSASLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ V+PE D++I +D+R+DT RASG+GGQH+N TDSAVRITHIPTGI+V + SE+ Sbjct: 179 SLEVIPELRENQDIEIKADDLRVDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG-RIT 317 SQ QN+ AM +L+++L +++ + + +IG G +IR+Y F + Sbjct: 239 SQFQNKDTAMSMLKSKLIELKERAHKEKIEDLSGDLKEIGWG---SQIRSYVFQPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR N + ++ V+ G ID+ I L + Sbjct: 296 DHRTNTEMGNVDAVMDGDIDNFILQYLKFNN 326 >gi|210134369|ref|YP_002300808.1| peptide chain release factor 2 [Helicobacter pylori P12] gi|238054483|sp|B6JPR7|RF2_HELP2 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|210132337|gb|ACJ07328.1| peptide chain release factor RF-2 [Helicobacter pylori P12] Length = 363 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKDSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPTLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ N K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQNSTKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|317010450|gb|ADU84197.1| peptide chain release factor 2 [Helicobacter pylori SouthAfrica7] Length = 363 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKDSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEALVLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|256820726|ref|YP_003142005.1| peptide chain release factor 2 [Capnocytophaga ochracea DSM 7271] gi|256582309|gb|ACU93444.1| bacterial peptide chain release factor 2 (bRF- 2) [Capnocytophaga ochracea DSM 7271] Length = 367 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 97/364 (26%), Positives = 173/364 (47%), Gaps = 28/364 (7%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 +++Q+ DL NR + E + D + + + Sbjct: 1 MTNNEQVKDLVNRLGALRRYFDVDAKRIEISNEEEKTFAPDFWDNAKEAEKVMRELRTKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y++ + D+ ++ + + I LE + + D Sbjct: 61 KWVEDYEEAENLTSDIEVLLDFFKEGEATAEDVDHQYTQALHAIEALE----FRNMLSDE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D S +L+I AG GG+E+ + L RMY + +K+KV+ L+ + D G K + Sbjct: 117 GDTMSAVLQITAGAGGTESCDWASMLLRMYTMWCNNQKYKVKTLNFQEGDVAGVKTVTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI DI + Sbjct: 177 IEGEYAFGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDTIEIDINPADITFE 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 TMR+SG+GGQ+VN ++AVR+ H PTGI++ S +SQ N+ +A+++L+++LY++E K+ Sbjct: 237 TMRSSGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQLYEIELKK 296 Query: 285 MANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 +R K++I G +IR Y + + D R N ++ V+ G +D+ + Sbjct: 297 RQAKRDEIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRTNYESTDVDSVMNGELDEFLK 353 Query: 342 PLLT 345 L Sbjct: 354 AYLM 357 >gi|153854560|ref|ZP_01995830.1| hypothetical protein DORLON_01825 [Dorea longicatena DSM 13814] gi|149752869|gb|EDM62800.1| hypothetical protein DORLON_01825 [Dorea longicatena DSM 13814] Length = 312 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 164/313 (52%), Gaps = 9/313 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + ++ I ++ L + + + +++L + ++ Sbjct: 1 MKELKNLKELVETIHGLYTSYEDINLLIEMGYEDEDPAMVKELEEEIH-----TFEKVFE 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 ++ L D + I+ I AG GG+E+ + G L+RMY R+A + + ++VL D Sbjct: 56 KLKIQTLLSGEYDACNAIMTIHAGAGGTESCDWAGMLYRMYCRWAERKGFSLQVLDFLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 D G K + + G + +K E GVHR+ R+ ++G+ TS A+ VLP +ID Sbjct: 116 DIAGIKAVTFEVKGENAYGYLKSEKGVHRLVRISPFNSAGKRQTSFASCDVLPDLEDDID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I +D++IDT RASG+GGQHVN T SA+RITH+PTGI+V +E+SQH N+ +AM++L Sbjct: 176 IEIDEDDLKIDTYRASGAGGQHVNKTSSAIRITHLPTGIVVQCQNERSQHHNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 +A+L ++ + A + S R ++ +IR+Y + DHR N + V+ Sbjct: 236 KAKLQLMKEQEQAEKVSDIR-GEVKDIGFGNQIRSYVMQPYTLVKDHRTNEENSNVNAVM 294 Query: 333 QGYIDDIINPLLT 345 G ID IN L Sbjct: 295 DGDIDSFINAYLK 307 >gi|121587849|ref|ZP_01677606.1| peptide chain release factor 2 [Vibrio cholerae 2740-80] gi|121728386|ref|ZP_01681414.1| peptide chain release factor 2 [Vibrio cholerae V52] gi|147673826|ref|YP_001216157.1| peptide chain release factor 2 [Vibrio cholerae O395] gi|153216950|ref|ZP_01950714.1| peptide chain release factor 2 [Vibrio cholerae 1587] gi|153801991|ref|ZP_01956577.1| peptide chain release factor 2 [Vibrio cholerae MZO-3] gi|153818695|ref|ZP_01971362.1| peptide chain release factor 2 [Vibrio cholerae NCTC 8457] gi|153822281|ref|ZP_01974948.1| peptide chain release factor 2 [Vibrio cholerae B33] gi|153826509|ref|ZP_01979176.1| peptide chain release factor 2 [Vibrio cholerae MZO-2] gi|153829166|ref|ZP_01981833.1| peptide chain release factor 2 [Vibrio cholerae 623-39] gi|227080844|ref|YP_002809395.1| peptide chain release factor 2 [Vibrio cholerae M66-2] gi|229505715|ref|ZP_04395225.1| peptide chain release factor 2 [Vibrio cholerae BX 330286] gi|229508711|ref|ZP_04398204.1| protein chain release factor B [Vibrio cholerae B33] gi|229512924|ref|ZP_04402391.1| peptide chain release factor 2 [Vibrio cholerae TMA 21] gi|229519540|ref|ZP_04408983.1| peptide chain release factor 2 [Vibrio cholerae RC9] gi|229520954|ref|ZP_04410376.1| peptide chain release factor 2 [Vibrio cholerae TM 11079-80] gi|229530470|ref|ZP_04419858.1| peptide chain release factor 2 [Vibrio cholerae 12129(1)] gi|229608734|ref|YP_002879382.1| protein chain release factor B [Vibrio cholerae MJ-1236] gi|254226529|ref|ZP_04920112.1| peptide chain release factor 2 [Vibrio cholerae V51] gi|255743877|ref|ZP_05417833.1| peptide chain release factor 2 [Vibrio cholera CIRS 101] gi|262156096|ref|ZP_06029215.1| peptide chain release factor 2 [Vibrio cholerae INDRE 91/1] gi|262169962|ref|ZP_06037652.1| peptide chain release factor 2 [Vibrio cholerae RC27] gi|262191216|ref|ZP_06049415.1| peptide chain release factor 2 [Vibrio cholerae CT 5369-93] gi|121547885|gb|EAX57969.1| peptide chain release factor 2 [Vibrio cholerae 2740-80] gi|121629320|gb|EAX61752.1| peptide chain release factor 2 [Vibrio cholerae V52] gi|124114015|gb|EAY32835.1| peptide chain release factor 2 [Vibrio cholerae 1587] gi|124122450|gb|EAY41193.1| peptide chain release factor 2 [Vibrio cholerae MZO-3] gi|125620933|gb|EAZ49284.1| peptide chain release factor 2 [Vibrio cholerae V51] gi|126510775|gb|EAZ73369.1| peptide chain release factor 2 [Vibrio cholerae NCTC 8457] gi|126520177|gb|EAZ77400.1| peptide chain release factor 2 [Vibrio cholerae B33] gi|146315709|gb|ABQ20248.1| peptide chain release factor 2 [Vibrio cholerae O395] gi|148875355|gb|EDL73490.1| peptide chain release factor 2 [Vibrio cholerae 623-39] gi|149739689|gb|EDM53896.1| peptide chain release factor 2 [Vibrio cholerae MZO-2] gi|227008732|gb|ACP04944.1| peptide chain release factor 2 [Vibrio cholerae M66-2] gi|227012488|gb|ACP08698.1| peptide chain release factor 2 [Vibrio cholerae O395] gi|229332243|gb|EEN97731.1| peptide chain release factor 2 [Vibrio cholerae 12129(1)] gi|229342187|gb|EEO07183.1| peptide chain release factor 2 [Vibrio cholerae TM 11079-80] gi|229344229|gb|EEO09204.1| peptide chain release factor 2 [Vibrio cholerae RC9] gi|229350173|gb|EEO15126.1| peptide chain release factor 2 [Vibrio cholerae TMA 21] gi|229354235|gb|EEO19165.1| protein chain release factor B [Vibrio cholerae B33] gi|229357938|gb|EEO22855.1| peptide chain release factor 2 [Vibrio cholerae BX 330286] gi|229371389|gb|ACQ61812.1| protein chain release factor B [Vibrio cholerae MJ-1236] gi|255738508|gb|EET93897.1| peptide chain release factor 2 [Vibrio cholera CIRS 101] gi|262021696|gb|EEY40407.1| peptide chain release factor 2 [Vibrio cholerae RC27] gi|262030132|gb|EEY48777.1| peptide chain release factor 2 [Vibrio cholerae INDRE 91/1] gi|262032918|gb|EEY51457.1| peptide chain release factor 2 [Vibrio cholerae CT 5369-93] gi|327483462|gb|AEA77869.1| Peptide chain release factor 2 [Vibrio cholerae LMA3894-4] Length = 299 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 109/304 (35%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I D+ + + L + + D E D E+ +E ++ +LE + + Sbjct: 1 MDTIDQLDRGVDDVEGLLELAIEAE-DQETFDEIGPELDELEAKLEQLE----FRRMFSG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C L+++AG+GG+EA + L RMY R+A + +K EV+ S+ D G K Sbjct: 56 DHDSSDCYLDLQAGSGGTEAQDWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATV 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++ GR HTS A+ + PE E D++I D+RI Sbjct: 116 RIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E + Sbjct: 176 DVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQ 235 Query: 284 RMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ AN K IG G +IR+Y RI D R + + VL G +D I Sbjct: 236 KQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIE 292 Query: 342 PLLT 345 L Sbjct: 293 ASLK 296 >gi|319935038|ref|ZP_08009481.1| peptide chain release factor 2 [Coprobacillus sp. 29_1] gi|319810056|gb|EFW06425.1| peptide chain release factor 2 [Coprobacillus sp. 29_1] Length = 371 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 173/342 (50%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I LK + ++ + + + + Y ++ + YD DL Sbjct: 25 DIEGLKREIEGLTVQTLDEHFWNNQEQAKKIYNQLNEMKKTTDTYDDLVSSLNDLDETY- 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D+ ++E D + E + L + LL + D + I+EI G GG+E+ Sbjct: 84 DYVKETEDTDFKEALDQDYELFEKHLNDFEKTLLFSGEYDHH-NAIVEIHPGAGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY+RY + +KVEVL D ++ G K + G + +K E GVHR+ R Sbjct: 143 WAAMLMRMYQRYGDKKDFKVEVLDYLDGEEAGLKSVTLRFIGYNAYGHLKAEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++S R HTS A+V V+PE +++I D+RIDT RASG+GGQH+N TDSA+RI Sbjct: 203 ISPFDSSKRRHTSFASVDVMPEFDNDIEIEIDQNDLRIDTYRASGAGGQHINKTDSAIRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 THIPT I+V S++SQ QNR +A+ +L+++LY V + A++ S + Q + + Sbjct: 263 THIPTHIVVTCQSQRSQIQNREQALIMLKSKLYQVMLEEQASKLSDIKGEQKA-IEWGSQ 321 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y + D+R + +L G +DD I L A Sbjct: 322 IRSYVLHPYSMVKDNRSGYESNNPKAILDGDLDDCIYAYLKA 363 >gi|254251975|ref|ZP_04945293.1| peptide chain release factor 2 [Burkholderia dolosa AUO158] gi|124894584|gb|EAY68464.1| peptide chain release factor 2 [Burkholderia dolosa AUO158] Length = 248 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ++G + ++ E+G+HR+ R ++SG HTS ++V V PE + +V+I Sbjct: 61 NATIKVTGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|167581337|ref|ZP_02374211.1| peptide chain release factor 2, programmed [Burkholderia thailandensis TXDOH] gi|167619419|ref|ZP_02388050.1| peptide chain release factor 2, programmed [Burkholderia thailandensis Bt4] gi|257138616|ref|ZP_05586878.1| peptide chain release factor 2 [Burkholderia thailandensis E264] Length = 248 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V+I Sbjct: 61 NATIKVSGDYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RL++ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AELRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|15644800|ref|NP_206970.1| peptide chain release factor 2 [Helicobacter pylori 26695] gi|2500142|sp|P55999|RF2_HELPY RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|2313254|gb|AAD07236.1| peptide chain release factor RF-2 (prfB) [Helicobacter pylori 26695] Length = 363 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 100/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILENSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D R+SG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRSSGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|330991179|ref|ZP_08315132.1| Peptide chain release factor 2 [Gluconacetobacter sp. SXCC-1] gi|329761765|gb|EGG78256.1| Peptide chain release factor 2 [Gluconacetobacter sp. SXCC-1] Length = 333 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 103/319 (32%), Positives = 162/319 (50%), Gaps = 13/319 (4%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +A KL E ++ I + + + +L + + + + Sbjct: 3 NDAEAAQKLMRERTLLANQIEGVQRLEADVNDTLELVELAEMEGDSAVVAEAVAGLRALA 62 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ L D C LE+ AG GG+EA + L RMY R+A +K Sbjct: 63 EEA-----KRRETESLLSGEADGNDCYLEVNAGAGGTEAQDWAEMLLRMYTRWAEQHGYK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 V ++ SS+ + G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V Sbjct: 118 VTMMESSEGEQAGIKSATIQVSGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWV 177 Query: 207 LP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 P I+++I D+R+DT RASG+GGQHVN T+SA+RITHIPTGI+V +++SQH+ Sbjct: 178 YPVVDDSIEIEINEADLRVDTFRASGAGGQHVNKTESAIRITHIPTGIVVACQTDRSQHR 237 Query: 265 NRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRI 321 NR AM +L+AR+Y+ E ++ + K IG G +IR+Y + + + D R Sbjct: 238 NRATAMTMLKARMYEQELQKREAAAAQTEANKTDIGWG---HQIRSYVLAPYQLVKDLRT 294 Query: 322 NLTLYKLEYVLQGYIDDII 340 N+ + +L G IDD + Sbjct: 295 NVEKTNPDAILDGDIDDFM 313 >gi|50286945|ref|XP_445902.1| hypothetical protein [Candida glabrata CBS 138] gi|49525208|emb|CAG58821.1| unnamed protein product [Candida glabrata] Length = 405 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 142/367 (38%), Positives = 219/367 (59%), Gaps = 20/367 (5%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L K++ + AE+E ++S D + +Y ++ + Y ++ ++L Sbjct: 45 LLLKRVSGVSKELAELEKQISNGYDED----VQRKYNSLMSLQDVYDRYKEQLGNYRELK 100 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I + D + + A E+ + +++ ++ + L+P +K+C+LE+R G GGS Sbjct: 101 EMI---DVDKSLAEEAAAELHELVPNLKKTTQDLLHRLIPPHPFAEKACMLELRPGVGGS 157 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGV 182 EA +F DL MY YA +KWK ++S +N+ G G + V I G ++ +K+E+GV Sbjct: 158 EAMIFAKDLLNMYIGYAHNKKWKHHIVSIRENEAGSGIMDAVLAIDEPGTYNILKYEAGV 217 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-------IPLEDIRIDTMRASGSGGQ 235 HRVQR+PATE+ GR HTS A V VLP+ + D E+IRID RASG GGQ Sbjct: 218 HRVQRIPATESKGRTHTSTAAVVVLPQLGDEGKDLDAFERSFKPEEIRIDVKRASGKGGQ 277 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTT+SAVR+THIPTGIM+ E+SQH+N+ +A +LR++L ++E+++ A + RK Sbjct: 278 HVNTTESAVRLTHIPTGIMIHMQDERSQHRNKAKAFSILRSKLAELEQQQKAEKERQVRK 337 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH---QAK 350 Q+ + DRS++IRTYNFSQ RITDHR L LY LE V+ G +DD+IN + + QA+ Sbjct: 338 EQVTTMDRSDKIRTYNFSQNRITDHRCGLNLYDLEGVISGERLDDVINAVRSFDDNIQAE 397 Query: 351 MIGSASE 357 I ++ Sbjct: 398 SIIETNQ 404 >gi|104773716|ref|YP_618696.1| peptide chain release factor 2 [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116513713|ref|YP_812619.1| protein chain release factor B [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|103422797|emb|CAI97438.1| Peptide chain release factor 2 (RF-2) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|116093028|gb|ABJ58181.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|325125366|gb|ADY84696.1| peptide chain release factor 2 [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 332 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 106/331 (32%), Positives = 171/331 (51%), Gaps = 6/331 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D K + + + + K + K++ D T + +++ E Sbjct: 1 MAEPGFWDNQEKAQKLISETNLLKEKRDSFLALKKDLTDEETALELLRLEADADLQKDTE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + ++ LL DD + ++EI G GG+EA + L RMY+RY Sbjct: 61 DQLAKLQEEF--HQYELNLLLSGEYDDHNALMEIHPGAGGTEAMDWGNMLLRMYQRYCDS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R K EV + D+ G K + ISG+ + +K E GVHR+ R+ +++ R HTS A Sbjct: 119 RGLKFEVNNFEPGDEAGLKSVSVRISGKNAYGLLKSEHGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE I++DI +D+RID R+SG+GGQH+N T SAVRITHIPTGI+ + +++ Sbjct: 179 SVEVIPEVDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHIPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +RA+L+ +E ++ E++A + Q+ +IR+Y F + DH Sbjct: 239 SQFQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQL-DIAWGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R + V+ G +D I L ++ Sbjct: 298 RTGYETADVGGVMDGKLDPFIYAYLQWRLSQ 328 >gi|256824891|ref|YP_003148851.1| peptide chain release factor 2 [Kytococcus sedentarius DSM 20547] gi|256688284|gb|ACV06086.1| bacterial peptide chain release factor 2 (bRF-2) [Kytococcus sedentarius DSM 20547] Length = 370 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 173/350 (49%), Gaps = 15/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK + A++E + S D + AA+S + ++ + DL ++ Sbjct: 24 DLPRLKEQLADLEQQSSAPDLWDDPENGQKVSAAMSRVRGEVERIESMDSRIDDLEVLVE 83 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D+E A E+ AI+ + +LE L D++ ++ IRAG GG +A Sbjct: 84 MGTEEGDAETLAEATKELAAIQAAVEKLEV----RTLLSGEYDEREAVITIRAGAGGVDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A ++ +VL +S ++ G K + ++ + + E G HR+ Sbjct: 140 ADFAEMLMRMYLRWAERHEYPTKVLDTSYAEEAGLKSVTFEVNVPYAYGNLVVEGGTHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P ++IP +I++D R+SG GGQ VNTTDSAV Sbjct: 200 VRISPYDNQGRRQTSFAAVEVVPVIEQTDSIEIPENEIKVDVFRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 R+THIPTGI+V+ +EKSQ QNR A++VL++RL + E +A RK G Sbjct: 260 RMTHIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLL----QRKAEEAAERKELAGDIKAS 315 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + + D R + + V G ID I + + + Sbjct: 316 WGDQMRSYVLHPYQMVKDLRTEHEVGNTQSVFDGDIDGFIEAGIRWKRGQ 365 >gi|167837158|ref|ZP_02464041.1| peptide chain release factor 2, programmed [Burkholderia thailandensis MSMB43] Length = 248 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ Sbjct: 61 NATIKVSGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RL++ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AELRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|118617904|ref|YP_906236.1| peptide chain release factor 2 [Mycobacterium ulcerans Agy99] gi|166225111|sp|A0PQZ6|RF2_MYCUA RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|118570014|gb|ABL04765.1| peptide chain release factor 2 PrfB [Mycobacterium ulcerans Agy99] Length = 371 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 103/347 (29%), Positives = 163/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + +S ++ ++ ++ +DL + Sbjct: 24 DVEGLRSRIEKLEHEASDPKLWDDQTRAQRVTSELSHTQGELRRVEELRRRLEDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEV-LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + A K +R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEEGAAAGEALTEADAEFKALRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYVRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V +EKSQ QN++ AM+VL+A+L + +R E A K GS Sbjct: 264 LTHIPTGIVVTCQNEKSQLQNKVAAMRVLQAKLLERKRIEERAELDAL-KGDGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G ID + + K Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPATVLDGDIDGFLEAGIRWRNRK 368 >gi|110597266|ref|ZP_01385554.1| peptide chain release factor 2 [Chlorobium ferrooxidans DSM 13031] gi|110341102|gb|EAT59570.1| peptide chain release factor 2 [Chlorobium ferrooxidans DSM 13031] Length = 363 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 173/346 (50%), Gaps = 15/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ---DLHT 64 + K + ++E ++ + + + ++ + Y++ +E+ D Sbjct: 23 DVDQRKEKVEDLEKITADPAFWNDQKEAHKILKELNEHKTWTEGYEKLAAKEKVCLDELE 82 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +S +L+ EI + I + + DD + ++ I AG GG+E Sbjct: 83 IASELEDESFSDELSTA-----IAEIEQEIAAIEFKNMLSGKDDAGNALITIHAGAGGTE 137 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+A + +K+ + D G K I G + +K E+GVHR Sbjct: 138 AQDWAEMLYRMYMRWAERKGFKIYTDDYQEGDGAGIKTATLEIQGAYAYGYLKAENGVHR 197 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + RV +++ R HTS A+V PEA ++++ ED+ + T R+ G GGQ+VN ++A Sbjct: 198 LVRVSPYDSNARRHTSFASVYTYPEAPPDVEIEVRKEDLELSTFRSGGKGGQNVNKVETA 257 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRI H+PTGI+V E+SQ QNR RAMK+L A+LY +R+ ++ +K +I G Sbjct: 258 VRIKHLPTGIVVGCQEERSQFQNRERAMKMLMAQLYQRQREEEDAKKREIEGKKKKIEWG 317 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI DHR N + +E VL G +D+ + L+ Sbjct: 318 ---SQIRSYVLDDRRIKDHRTNYERFDVETVLDGDLDEFMEHYLSE 360 >gi|42522998|ref|NP_968378.1| hypothetical protein Bd1489 [Bdellovibrio bacteriovorus HD100] gi|39575203|emb|CAE79371.1| prfB [Bdellovibrio bacteriovorus HD100] Length = 321 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 95/316 (30%), Positives = 165/316 (52%), Gaps = 9/316 (2%) Query: 33 IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRE 92 KL +E A + + + + + + + L + + + + V + Sbjct: 2 QKLNKEKALLEKAVGEFDAFASRLSDSKVLLEMAEEAQDEGSFSEAKAEVVALEKLGEE- 60 Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSS 152 + + D S L I +G GG+E+ + L RMY RYA +KV+++ Sbjct: 61 ----LELKRVLNGELDSNSSYLSINSGAGGTESCDWASMLLRMYTRYADKHGFKVQIIEM 116 Query: 153 SDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL-PEAA 211 ++ + G K I G + +K ESGVHR+ R+ +++ R HTS A+V Sbjct: 117 TEGEGAGIKSCTLLIEGPYAYGYLKAESGVHRLVRISPFDSNARRHTSFASVFAWAEVDD 176 Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAM 270 +I++++ +D+++DT RASG+GGQHVN TDSAVR+THIP+G++V E+SQ QNR +A+ Sbjct: 177 DINIEVRPDDLKVDTFRASGAGGQHVNRTDSAVRMTHIPSGVIVTCQVERSQIQNREKAL 236 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 K+L+ARLY++E ++ E+ A Q + + +IR+Y + + DHR + +++ Sbjct: 237 KMLKARLYEMEIEKRNAEKDAMN-SQKKANEWGSQIRSYVMHPYQMVKDHRTDFETNQVD 295 Query: 330 YVLQGYIDDIINPLLT 345 V+ G +D I L Sbjct: 296 DVMDGDLDGFIMSYLK 311 >gi|163795148|ref|ZP_02189116.1| Protein chain release factor B [alpha proteobacterium BAL199] gi|159179546|gb|EDP64075.1| Protein chain release factor B [alpha proteobacterium BAL199] Length = 322 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + + +++ +Q ++ L + D+ + D + K Sbjct: 1 MQERTRLEKQLGEVNQLNQGLEDALMLIELGETEGDDATVADAEKELEAIRVKAESM--- 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D C LE+ AG GG+EA + L RMY R++ R +KVE L S Sbjct: 58 --QIESLLSGEADANDCYLEVHAGAGGTEAQDWAEMLLRMYTRWSERRGFKVEWLEESQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV 215 ++ G K ISG + +K ESGVHR+ R+ ++ R HTS ++ V P + Sbjct: 116 EEAGLKSATVKISGHNAYGWLKIESGVHRLVRISPYDSQARRHTSFSSAWVYPVIDDSID 175 Query: 216 D-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 + +D+++DT RASG+GGQHVN TDSA+RITH+P+GI+V +++SQH+NR AM++L Sbjct: 176 IVVEDKDLKVDTYRASGAGGQHVNRTDSAIRITHLPSGIVVQCQADRSQHRNRATAMEML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +ARLY+ E KR E SA K IG G +IR+Y + + D R N Sbjct: 236 KARLYEAELKRREEEASATEATKSDIGWG---HQIRSYVLQPYQMVKDLRTNEESSNPAA 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G ID + L A Sbjct: 293 VLDGDIDAFLEAALAAR 309 >gi|317495961|ref|ZP_07954323.1| peptide chain release 2 [Gemella moribillum M424] gi|316913865|gb|EFV35349.1| peptide chain release 2 [Gemella moribillum M424] Length = 372 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 111/350 (31%), Positives = 189/350 (54%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I + + R AEIE M ++ + + I ++ + +I Sbjct: 25 KIEEKEQRVAEIENMMLDADFWNDSETASTLVTESKSIKKELDEFSAMLDYLNHSEEMIE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N + + + E++ +++++ + ++ LL + D+ + ILEI AG GG++A Sbjct: 85 FLNDEDD--EEIYQELIETVRDLKQQVEDFSFRLLFAEEYDNNTAILEIHAGAGGTDATD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMYER+ + + L+ D G K I G + +K E GVHRV R Sbjct: 143 WAEIMLRMYERFFSKQGLTYSYLNYQSGDITGVKSATLKIEGDFAYGLLKGEKGVHRVVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + SG+ HTS A++ V+PE ++ +++I +ED++IDT RA G+GGQH+NTTDSAVR Sbjct: 203 ISPFDPSGKRHTSFASIDVIPEFSDEEANIEINIEDLKIDTYRAQGAGGQHINTTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDR 302 ITH+PTGI+V + +E+SQ +NR AMK L+++L+ +E + E ++ R Q IG G Sbjct: 263 ITHLPTGIVVQSQAERSQIKNRDFAMKNLKSKLHQLELEEKERELASIRGEQKDIGWG-- 320 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F+ + DHR N + ++ V+ G I D I+ L + + Sbjct: 321 -SQIRSYVFTPYTMVKDHRTNYEVSTVDKVMDGEIIDFIDAYLHYNIKQK 369 >gi|147834602|emb|CAN69654.1| hypothetical protein VITISV_010541 [Vitis vinifera] Length = 426 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 106/354 (29%), Positives = 169/354 (47%), Gaps = 19/354 (5%) Query: 4 LSHKQI--CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQE 58 L K++ L R + ++++ D + K++ E+ + + + +Q+ E Sbjct: 70 LIKKRLQWKKLVVRLDVLSAQLNKPDLWDNPVHAGKISREHGMLMGKMKGVKNLEQELLE 129 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 D+ + + N + + + L D SC +E++A Sbjct: 130 HIDMVKLAREENDPELESESLKALLGMRRNSKE-----KELEALLAGDHDSCSCYIEVQA 184 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+E+ + + +MY+ +A R + V V+ + G K + G F K Sbjct: 185 GAGGTESMDWAAMVMQMYKMWAQRRGYGVTVVDEMPGETAGIKRATIKVDGEYSFGYAKA 244 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E GVHR+ R+ ++ R HTS A VAV+P A V I D+RI+ RA G+GGQH Sbjct: 245 EVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDASSHVQINESDLRIERFRAGGAGGQH 304 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SAVRI HIPTG+ +E+SQHQN+ AM VL++RL +E R A + + + Sbjct: 305 VNTTESAVRIVHIPTGVTATCQNERSQHQNKASAMAVLQSRLDQLEISRQAQINAQHTQS 364 Query: 296 --QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I G+ +IRTY R + D R N + + VL+G +D I L+A Sbjct: 365 LTDISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSYLSA 415 >gi|150004050|ref|YP_001298794.1| peptide chain release factor RF-2 [Bacteroides vulgatus ATCC 8482] gi|254882894|ref|ZP_05255604.1| peptide chain release factor RF-2 [Bacteroides sp. 4_3_47FAA] gi|294778088|ref|ZP_06743522.1| peptide chain release factor 2-like protein [Bacteroides vulgatus PC510] gi|319639698|ref|ZP_07994431.1| peptide chain release factor RF-2 [Bacteroides sp. 3_1_40A] gi|149932474|gb|ABR39172.1| peptide chain release factor RF-2 [Bacteroides vulgatus ATCC 8482] gi|254835687|gb|EET15996.1| peptide chain release factor RF-2 [Bacteroides sp. 4_3_47FAA] gi|294448146|gb|EFG16712.1| peptide chain release factor 2-like protein [Bacteroides vulgatus PC510] gi|317388662|gb|EFV69508.1| peptide chain release factor RF-2 [Bacteroides sp. 3_1_40A] Length = 371 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 156/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR------FAEIELRM----------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + +IE ++ D K + + + Sbjct: 1 MITIEQLKDVKERTAALERYLDIENKLVQVEEEQLRTQAPGFWDDAKKAEAQMRKVKDLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + K +L D + + LE + Sbjct: 61 KWIDGYREVKTMADELELAFDFCKDDLVTEEEVDAAYQKAVTAVEALELKNMLRQEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I G GG+E+ + L RMY R+A +KV V + D D+ G K + Sbjct: 121 D----CVLKINCGAGGTESQDWASMLMRMYMRWAETNGYKVSVANLQDGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V I + D Sbjct: 177 IEGSFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVTIEPARMSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|88192320|pdb|2B9M|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex. This File Contains The 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf2 From A Crystal Structure Of The Whole Ribosomal Complex". The Entire Crystal Structure Contains One 70s Ribosome, Trnas, Mrna And Release Factor Rf2 And Is Described In Remark 400 Length = 365 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 106/349 (30%), Positives = 171/349 (48%), Gaps = 15/349 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E+E R+ + + K+++E A + + + Q +L Sbjct: 18 DIPQKETRLKELERRLEDPSLWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELME 77 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ +L + E + L +K+ IL I+ G GG+E Sbjct: 78 ELPAEEREALKPELEEAAKKLDELYHQTL---------LNFPHAEKNAILTIQPGAGGTE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A + ++VEV+ + + G + G + + E+GVHR Sbjct: 129 ACDWAEMLLRMYTRFAERQGFQVEVVDLTPGPEAGIDYAQILVKGENAYGLLSPEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R +ASGR HTS A + E++V + E++RID MRASG GGQ VNTTDSA Sbjct: 189 LVRPSPFDASGRRHTSFAGVEVIPEVDEEVEVVLKPEELRIDVMRASGPGGQGVNTTDSA 248 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V + +SQ +N+ A+K+L+ARLY++ERK+ E A R ++ + Sbjct: 249 VRVVHLPTGITVTCQTTRSQIKNKELALKILKARLYELERKKREEELKALR-GEVRPIEW 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR L + E VL G + D+I L + Sbjct: 308 GSQIRSYVLDKNYVKDHRTGLMRHDPENVLDGDLMDLIWAGLEWKAGRR 356 >gi|193215043|ref|YP_001996242.1| hypothetical protein Ctha_1332 [Chloroherpeton thalassium ATCC 35110] gi|193088520|gb|ACF13795.1| hypothetical protein Ctha_1332 [Chloroherpeton thalassium ATCC 35110] Length = 366 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 111/366 (30%), Positives = 172/366 (46%), Gaps = 25/366 (6%) Query: 1 MVFLSHKQICDLKNRF----------------AEIELRMSESPSVDAYIKLTEEYAAISP 44 M L + + D+ R AE+E + + + IS Sbjct: 1 MFELQRENLQDISERLSLLRGFLDIDARLNAIAELEKKTAAEGFWSNQESAQKVLKEISG 60 Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 + ++ Q + + + E ++ + + + + Sbjct: 61 HREWTEDFLDLEKTLQGEEESLEIAEELED--ESYLAEAEKNIDKLDRAVHALEFRNMLS 118 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 DD ++ +L I AG GG+EA + L+RMY R+A R +KV + D G K Sbjct: 119 GADDKRNALLTIHAGAGGTEAQDWADMLYRMYMRWAERRGFKVFTDDYQEGDGAGIKTAT 178 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIR 223 I G + +K E+GVHR+ RV +A+ R HTS A+V PEA + +++I ED+ Sbjct: 179 LEIQGDYAYGYLKAENGVHRLVRVSPFDANARRHTSFASVYAYPEAPDDVEIEIRKEDLE 238 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 +DT R+ G GGQ+VN ++AVRI H+P+GI+V E+SQ QNR RAMK+LR+RLY ++R Sbjct: 239 MDTFRSGGKGGQNVNKVETAVRIKHVPSGIVVACQQERSQFQNRERAMKMLRSRLYQLKR 298 Query: 283 KRMANERSAN--RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + + A +K +I G +IR+Y RI DHR N + +E VL G ID I Sbjct: 299 EEEEAAKLALEGKKKKIEWG---SQIRSYVLDDRRIKDHRTNHESFNVEAVLDGDIDQFI 355 Query: 341 NPLLTA 346 L Sbjct: 356 ERYLAE 361 >gi|329296879|ref|ZP_08254215.1| peptide chain release factor 1 [Plautia stali symbiont] Length = 293 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 12/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 Q ++ Q L + + + + + K + + + D C Sbjct: 2 QQGLEDVQGLLELAVEADDEETFNEAVVELDALDVKLGE-----LEFRRMFSGEYDSADC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 ++I+AG+GG+EA + L RMY R+A + +K E++ S+ + G K I G Sbjct: 57 YMDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESEGEVAGTKSATIKIIGDYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 + ++ E+GVHR+ R ++ GR HTS ++V + PE + D++I D+RID RASG Sbjct: 117 YGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDSIDIEINPADLRIDVYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--E 288 +GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ E ++ + Sbjct: 177 AGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYEYEMQKKNADKQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R ++ + VL G +D I L A Sbjct: 237 AAEENKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 291 >gi|300813058|ref|ZP_07093436.1| peptide chain release factor 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|313123317|ref|YP_004033576.1| bacterial peptide chain release factor 2 (brf-2) [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|300495899|gb|EFK31043.1| peptide chain release factor 2 [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|312279880|gb|ADQ60599.1| Bacterial peptide chain release factor 2 (BRF-2) [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 332 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 171/331 (51%), Gaps = 6/331 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D K + + + + K + +++ D T + +++ E Sbjct: 1 MAEPGFWDNQEKAQKLISETNLLKEKRDSFLALEKDLTDEETALELLRLEADADLQKDTE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + ++ LL DD + ++EI G GG+EA + L RMY+RY Sbjct: 61 DQLAKLQEEF--HQYELNLLLSGEYDDHNALMEIHPGAGGTEAMDWGNMLLRMYQRYCDS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R K EV + D+ G K + ISG+ + +K E GVHR+ R+ +++ R HTS A Sbjct: 119 RGLKFEVNNFEPGDEAGLKSVSVRISGKNAYGLLKSEHGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE I++DI +D+RID R+SG+GGQH+N T SAVRITHIPTGI+ + +++ Sbjct: 179 SVEVIPEVDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHIPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +RA+L+ +E ++ E++A + Q+ +IR+Y F + DH Sbjct: 239 SQFQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQL-DIAWGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R + V+ G +D I L ++ Sbjct: 298 RTGYETADVGGVMDGKLDPFIYAYLQWRLSQ 328 >gi|170702008|ref|ZP_02892928.1| peptide chain release factor 2 [Burkholderia ambifaria IOP40-10] gi|171322226|ref|ZP_02911072.1| peptide chain release factor 2 [Burkholderia ambifaria MEX-5] gi|172061072|ref|YP_001808724.1| peptide chain release factor 2 [Burkholderia ambifaria MC40-6] gi|170133098|gb|EDT01506.1| peptide chain release factor 2 [Burkholderia ambifaria IOP40-10] gi|171092451|gb|EDT37797.1| peptide chain release factor 2 [Burkholderia ambifaria MEX-5] gi|171993589|gb|ACB64508.1| peptide chain release factor 2 [Burkholderia ambifaria MC40-6] gi|325525095|gb|EGD02988.1| peptide chain release factor 2 [Burkholderia sp. TJI49] Length = 248 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 149/249 (59%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ++G + ++ E+G+HR+ R ++SG HTS ++V V PE + +V++ Sbjct: 61 NATVKVTGEYAYGFLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + VL G +D Sbjct: 181 AEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|295698659|ref|YP_003603314.1| peptide chain release factor 1 [Candidatus Riesia pediculicola USDA] gi|291157243|gb|ADD79688.1| peptide chain release factor 1 [Candidatus Riesia pediculicola USDA] Length = 346 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 152/345 (44%), Positives = 217/345 (62%), Gaps = 9/345 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQ 57 M ++ +K +F I+ S+ L EY + IIS + ++ Sbjct: 1 MKKSIFEEYQKIKKKFKTIQKNFLNKSSIYNSKSRPSLQREYTKLFKIISNFKKIESIRK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 E +++ +I D S + + +++EN + L PKD +D K C LEI+ Sbjct: 61 EIEEIKKLILDEELKSLALEELN----KLINLKKKVENRLRNQLTPKDQNDRKDCFLEIK 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRM 176 AGTGGSEAA+F DLFRMY +YA WKVE++S ++ + G GYKEI+A ISG+ V+ ++ Sbjct: 117 AGTGGSEAAIFAKDLFRMYCKYAESCSWKVEIISINEIESGSGYKEIIAKISGKEVYRKL 176 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFESG HRVQR+P TE+ GR+HTS+ VA+L + ++ I DIRIDT R+SG+GGQH Sbjct: 177 KFESGGHRVQRIPETESRGRIHTSSCKVAILLKVDASEIKINQNDIRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT+SA+R+THIPTGI V E+SQH+NR +AM VL ARL ++E K++A E+S +K Sbjct: 237 VNTTNSAIRVTHIPTGISVECQDERSQHKNRAKAMSVLLARLKNLELKKVAQEKSYKKKF 296 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 GSG+RS+RIRTYNF +G I DHR N Y++ V+ G ++ +I Sbjct: 297 LFGSGERSDRIRTYNFQRGTIVDHRTNSVTYQINEVMNGKLEILI 341 >gi|253680935|ref|ZP_04861738.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873] gi|253562784|gb|EES92230.1| peptide chain release factor 2 [Clostridium botulinum D str. 1873] Length = 327 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 116/328 (35%), Positives = 174/328 (53%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ES D K E + KI Y K +DL +I S E + + E Sbjct: 1 MQESNFWDNINKAQEITQEAKGLKDKIEKYYNTKNRLEDLKVLI--EISIEEDDESSVEE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +L KE++ + +E +L D + I+ + AG GG++A + L RMY R+A Sbjct: 59 ILNEIKEVKVIIDEFKVQILLSGEYDKNNAIVSLHAGAGGTDAQDWTEMLLRMYTRWAEA 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE+L D+ G K I G + +K E G+HR+ R+ A+G+ TS A Sbjct: 119 KGYKVEILDILPGDEAGIKSASLKIMGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ VLPE D++I +D+RIDT RASG+GGQH+N TDSAVRITHIPTGI+V + SE+ Sbjct: 179 SLEVLPELTESQDIEIKSDDLRIDTYRASGAGGQHINKTDSAVRITHIPTGIVVQSQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG-RIT 317 SQ QN+ AM +L+++L +++ + + +IG G +IR+Y F + Sbjct: 239 SQFQNKDTAMSMLKSKLVELKERAHKEKIEDLSGDLKEIGWG---SQIRSYVFQPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N + ++ V+ G ID I L Sbjct: 296 DHRTNTEMTNVDAVMDGDIDIFIVEYLK 323 >gi|76810558|ref|YP_334108.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1710b] gi|121600418|ref|YP_993518.1| peptide chain release factor 2, programmed [Burkholderia mallei SAVP1] gi|124383704|ref|YP_001029053.1| peptide chain release factor 2 [Burkholderia mallei NCTC 10229] gi|126449475|ref|YP_001081026.1| peptide chain release factor 2, programmed [Burkholderia mallei NCTC 10247] gi|134278044|ref|ZP_01764759.1| peptide chain release factor 2 [Burkholderia pseudomallei 305] gi|167720343|ref|ZP_02403579.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei DM98] gi|167739335|ref|ZP_02412109.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei 14] gi|167816549|ref|ZP_02448229.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei 91] gi|167824945|ref|ZP_02456416.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei 9] gi|167846462|ref|ZP_02471970.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei B7210] gi|167895040|ref|ZP_02482442.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei 7894] gi|167903426|ref|ZP_02490631.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei NCTC 13177] gi|167911676|ref|ZP_02498767.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei 112] gi|167919676|ref|ZP_02506767.1| peptide chain release factor 2, programmed [Burkholderia pseudomallei BCC215] gi|254177740|ref|ZP_04884395.1| peptide chain release factor 2, programmed [Burkholderia mallei ATCC 10399] gi|254195760|ref|ZP_04902186.1| peptide chain release factor 2 [Burkholderia pseudomallei S13] gi|254357976|ref|ZP_04974249.1| peptide chain release factor 2 [Burkholderia mallei 2002721280] gi|76580011|gb|ABA49486.1| peptide chain release factor 2, programmed frameshift [Burkholderia pseudomallei 1710b] gi|121229228|gb|ABM51746.1| peptide chain release factor 2, programmed [Burkholderia mallei SAVP1] gi|134251694|gb|EBA51773.1| peptide chain release factor 2 [Burkholderia pseudomallei 305] gi|148027103|gb|EDK85124.1| peptide chain release factor 2 [Burkholderia mallei 2002721280] gi|160698779|gb|EDP88749.1| peptide chain release factor 2, programmed [Burkholderia mallei ATCC 10399] gi|169652505|gb|EDS85198.1| peptide chain release factor 2 [Burkholderia pseudomallei S13] Length = 248 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG + ++ E+G+HR+ R ++SG HTS ++V V PE + +V+I Sbjct: 61 NATIKVSGEYAYGYLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RL++ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLFE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q R+ D R N+ + + VL G +D Sbjct: 181 AELRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTKAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|168182216|ref|ZP_02616880.1| peptide chain release factor 2 [Clostridium botulinum Bf] gi|237793493|ref|YP_002861045.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657] gi|182674541|gb|EDT86502.1| peptide chain release factor 2 [Clostridium botulinum Bf] gi|229262967|gb|ACQ54000.1| peptide chain release factor 2 [Clostridium botulinum Ba4 str. 657] Length = 325 Score = 203 bits (516), Expect = 4e-50, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFTVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYLK 322 >gi|196231602|ref|ZP_03130460.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428] gi|196224455|gb|EDY18967.1| peptide chain release factor 2 [Chthoniobacter flavus Ellin428] Length = 350 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 165/337 (48%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E + + E + + I + D++ ++ L + + N ++ ++++ Sbjct: 1 MAEPDFWANKERAQKNVEEVSTLRNKIGPLLTLDRQIEDLPVLIELAREANDETSVKEVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + +L +D + L I +G GG+E+ + L RMY+R+ Sbjct: 61 KEYGVIQNGLAE-----FELKMLLNGPNDRYNAFLTINSGAGGTESCDWADMLLRMYQRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K EV+ ++ G K ++G F + E GVHR+ R+ +A+ R HT Sbjct: 116 IERHGFKSEVMDIQLGEEAGIKSCTLKVAGEYAFGYLATERGVHRLVRISPFDANKRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A V V+PE ++I DI +DT R+ G GGQ+VN ++AVRI HIPTGI+ Sbjct: 176 SFAGVDVVPELPESAPIEINEADIEVDTYRSGGKGGQNVNKVETAVRIRHIPTGIVAACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR 315 +E+SQ +N++ AM++L+A+L +E +MA E +A K + G +IR+Y F + Sbjct: 236 NERSQQKNKVTAMRMLQAKLQQIEVDKMAAETAAAYGEKADVSFG---SQIRSYVFQPYQ 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + D R + + V+ G ID I L +A+ Sbjct: 293 KVLDLRTGVDTSNISAVMDGDIDAFIQGKLRGPEARK 329 >gi|168177506|ref|ZP_02612170.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916] gi|182671219|gb|EDT83193.1| peptide chain release factor 2 [Clostridium botulinum NCTC 2916] Length = 325 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R ER + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYLK 322 >gi|307689287|ref|ZP_07631733.1| peptide chain release factor 2 [Clostridium cellulovorans 743B] Length = 329 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 100/334 (29%), Positives = 170/334 (50%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQ 80 M ES D + A I +I +Y+ + +D+ +I +DS + Sbjct: 1 MQESGFWDNLERAQSVTARAKGIKDRIDLYNNFQSSVEDIKVLIEMAIEENDSSLVTEVY 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 E+ + + L L+ D + I+ + +G GG++A + L RMY R+ Sbjct: 61 NEISTLSDSVENL----RLELMLSGEYDTNNAIVTLHSGVGGTDAMDWTEMLLRMYTRWC 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + + VE L D+ G K ++G + +K E G+HR+ R+ A+G+ TS Sbjct: 117 EKKAFNVETLDLQVGDEAGIKSATLKVTGLYAYGYLKAEKGIHRLVRISPFNANGKRQTS 176 Query: 201 AATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A++ V PE + +V+I D+++DT RASG+GGQHVN T+SA+RITHIPTGI+V + Sbjct: 177 FASLEVTPELRQDQNVEINPSDLKVDTYRASGAGGQHVNKTESAIRITHIPTGIVVQCQN 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 E+SQ QNR A+ +L+++L +++ +R E+ + + +IR+Y F + Sbjct: 237 ERSQIQNRETALNMLKSKLVELK-ERAHKEKIEDLTGDLKDMGWGSQIRSYVFHPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR N+ + + V+ G +D I L + + K Sbjct: 296 DHRTNIQVNDVYKVMDGELDVFIKGYLHSDENKR 329 >gi|301335943|ref|ZP_07224187.1| peptide chain release factor 2 [Chlamydia trachomatis L2tet1] Length = 334 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 173/334 (51%), Gaps = 11/334 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D + + I+ + ++S +++ K + + + D S ++ Sbjct: 2 EQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDEESSKDLEMQK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++E + E + E L L D SC L I AG GG+E+ +V + RMY R+ Sbjct: 62 ELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWVEMVLRMYMRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ W+VEV+ D + G K I + G + K ESGVHR+ R+ +++ + HT Sbjct: 120 ASSHSWRVEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSNAKRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI+V Sbjct: 180 SFASVEVFPEIDDKIEVEIHPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGIVVSCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG- 314 +E+SQ QNR M +LRAR+Y + +++ +RK +I G +IR Y F Sbjct: 240 NERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQIRNYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R + ++ ++ G +D I L + Sbjct: 297 LVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 330 >gi|254247791|ref|ZP_04941112.1| Peptide chain release factor 2 [Burkholderia cenocepacia PC184] gi|124872567|gb|EAY64283.1| Peptide chain release factor 2 [Burkholderia cenocepacia PC184] Length = 248 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y RY + +K EVL SD D G K Sbjct: 1 MFSNPADPNNCFIDIQAGAGGTEACDWASMLLRQYLRYCERKGFKAEVLEESDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ++G + ++ E+G+HR+ R ++SG HTS ++V V PE + +V+I Sbjct: 61 NATVKVTGEYAYGFLRTETGIHRLVRKSPFDSSGGRHTSFSSVFVYPEIDDSIEVEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQH+N TDSAVRITH+PTGI+V +++SQH+NR AM +L++RLY+ Sbjct: 121 DLRIDTYRASGAGGQHINKTDSAVRITHMPTGIVVQCQNDRSQHRNRAEAMAMLKSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 VE ++ E+ + K +G G +IR+Y Q R+ D R N+ + VL G +D Sbjct: 181 VEMRKRQAEQDKLESSKTDVGWG---HQIRSYVLDQSRVKDLRTNVEMSNTRAVLDGDLD 237 Query: 338 DIINPLLTA 346 D I+ L Sbjct: 238 DFISASLKQ 246 >gi|217031931|ref|ZP_03437433.1| hypothetical protein HPB128_3g50 [Helicobacter pylori B128] gi|298736886|ref|YP_003729416.1| peptide chain release factor RF-2 [Helicobacter pylori B8] gi|216946400|gb|EEC25005.1| hypothetical protein HPB128_3g50 [Helicobacter pylori B128] gi|298356080|emb|CBI66952.1| peptide chain release factor RF-2 [Helicobacter pylori B8] Length = 363 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 102/343 (29%), Positives = 177/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELGRIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDND-----EVTLSLLYEEAPILEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ Sbjct: 142 DWASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNTAYSNVEAILDGDIDAILEGVLIA 361 >gi|327190272|gb|EGE57372.1| peptide chain release factor 2 [Rhizobium etli CNPAF512] Length = 342 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 165/333 (49%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + + + + + + I+ Q +Q+ D +I + ++ + Sbjct: 2 NNKAEDPNLWNDAAEAQKLMRERQQLDDGINGVKQLEQQLNDNIELIELGEEEGDLSVVK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E + + D LE+ +G GG+E+ + L RMY R+ Sbjct: 62 EAEDTLKALKAEA--ARRQVEAMLSGEADGNDTYLEVHSGAGGTESQDWANMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +++KVE+L D ++ G K + G + +K ESGVHR+ R+ +++ R HT Sbjct: 120 AERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNARRHT 179 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +++ V P I ++I D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 180 SFSSIWVYPVVDDSIQIEINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR 315 E+SQH+NR +A +LRAR+Y+ E K+ + +A K IG G +IR+Y + Sbjct: 240 QERSQHKNRAKAWDMLRARMYEAELKKREDAANAEAASKTDIGWG---HQIRSYVLQPYQ 296 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R + + VL G +++ + L Sbjct: 297 LVKDLRTGVASTAPDDVLDGDLNEFMEAALAHR 329 >gi|7388055|sp|P74476|RF2_SYNY3 RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 372 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 164/343 (47%), Gaps = 7/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK + ++E ++ D + + ++ S++ + +Q+ QD ++ Sbjct: 27 DLPGLKAKVQDLEQCAAQPDFWDDTDQAQQILQTLNETKSQLEQWGIWQQQWQDSQAIVE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + L + E + + + L D K L I AG GG++A Sbjct: 87 LLELEDDQALLTEAETTLEQLQKEL--DRWELQQLLSGPYDAKGATLTINAGAGGTDAQD 144 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R++ + +KV + S+ D+ G K + I GR + +K E G HR+ R Sbjct: 145 WAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTHRLVR 204 Query: 188 VPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + A+G+ TS A V V+P I +DIP +D+ I T RA G GGQ+VN ++AVR Sbjct: 205 ISPFNANGKRQTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVETAVR 264 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG+ V + E+SQ QN+ +A+ +L+A+L V ++ A + R + Sbjct: 265 IVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVE-AAWGT 323 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R N+ + V+ G + D I L Sbjct: 324 QIRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDFIEAYLRH 366 >gi|157964348|ref|YP_001499172.1| peptide chain release factor 2 [Rickettsia massiliae MTU5] gi|157844124|gb|ABV84625.1| Peptide chain release factor RF-2 [Rickettsia massiliae MTU5] Length = 337 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 99/334 (29%), Positives = 174/334 (52%), Gaps = 10/334 (2%) Query: 19 IELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 +E + + + S + K++ +++ K +D + +++++ L Sbjct: 4 LEELTANPSLWNDQANAQKLLREKSNLEEKLNAFNKLKSNLKDALELEEMAEAENDLETL 63 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 +Q + K + + + L D +C LEI AG GG+E+ + + RMY R Sbjct: 64 SQ--IEQDLKNLSIIAAKFETECLFSGEADGNNCFLEINAGAGGTESHDWASIMMRMYLR 121 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +K E+++ + ++ G K I G+ + K E+GVHR+ R+ A+G+ Sbjct: 122 FAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTEAGVHRLVRISPFNAAGKRM 181 Query: 199 TSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPTG + Sbjct: 182 TSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPTGTVTQC 241 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG 314 S++SQH+N+ +AMK+L+A+LY++E ++ + + K G +IR+Y Sbjct: 242 QSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG---HQIRSYVLQPY 298 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +++ ++ L + Sbjct: 299 QMVKDLRTDYETSDTKGVLDGDLEEFVSANLAMN 332 >gi|153932889|ref|YP_001382578.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC 19397] gi|153936079|ref|YP_001386131.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall] gi|152928933|gb|ABS34433.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC 19397] gi|152931993|gb|ABS37492.1| peptide chain release factor 2 [Clostridium botulinum A str. Hall] Length = 325 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYLK 322 >gi|322804442|emb|CBZ01992.1| peptide chain release factor 2 [Clostridium botulinum H04402 065] Length = 325 Score = 203 bits (515), Expect = 4e-50, Method: Composition-based stats. Identities = 96/329 (29%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNAIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R ER + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYLK 322 >gi|296122601|ref|YP_003630379.1| hypothetical protein Plim_2354 [Planctomyces limnophilus DSM 3776] gi|296014941|gb|ADG68180.1| hypothetical protein Plim_2354 [Planctomyces limnophilus DSM 3776] Length = 372 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 12/346 (3%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 + R AEI MS D K + + + + ++L + D Sbjct: 29 QARVAEINEAMSAPDFWDHQEKAQALVTELRNVNGSLKPLQELIDGTEELAVLREFLAED 88 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 ++ E++ + ++E ++ + +D S L+I+AG GG++A+ + L Sbjct: 89 DSSE--SRDEMVGLLASLQEKFQQVELKAMMSRPEDPCSAYLQIQAGEGGTDASDWAAML 146 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R ++ E++ S+ ++ G + I G V+ ++ E+GVHR+ R+ + Sbjct: 147 LRMYTRWAEDRGFETELIEISEAEEAGIRNATLAIRGEYVYGLLRGETGVHRLIRISPFD 206 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDI----PLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +GR TS A V V+PE + + IR D RASG+GGQHVN T SA+R+TH Sbjct: 207 GAGRRQTSFAAVDVIPEPDDTIDIDINWEDPKIIREDIFRASGAGGQHVNKTSSAIRLTH 266 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 +PT +V +E+SQH+NR K+L A+L +E + NE + R K +IG G E Sbjct: 267 LPTNTVVQCQNERSQHKNRSWCRKMLVAKLLQLETVKRENEAAHKRGQKSKIGFG--GET 324 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 IR Y + + + D R NL + VL G ID+ + L A+ Sbjct: 325 IRNYVLNPEQFVKDTRTNLKVGTPMPVLDGRIDEFLEAYLRWDMAE 370 >gi|293390164|ref|ZP_06634498.1| peptide chain release factor 2 [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950698|gb|EFE00817.1| peptide chain release factor 2 [Aggregatibacter actinomycetemcomitans D7S-1] Length = 300 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 ++ I +Q ++ L + + + + +A + + ++ + + Sbjct: 2 VNTIKNLEQGLEDVDGLLELAVEAGDEDTFNEA-----IAELNALEQQLEKLEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 EHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 +SG F ++ E+G+HR+ R +++ R HTS + V PE + D+RI Sbjct: 117 KVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITHIP+GI+V +++SQH+N+ +AMK L+A+LY++E + Sbjct: 177 DVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQ 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + ++ + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 KKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIE 293 Query: 342 PLLTA 346 L A Sbjct: 294 ASLKA 298 >gi|189499218|ref|YP_001958688.1| peptide chain release factor 2 [Chlorobium phaeobacteroides BS1] gi|189494659|gb|ACE03207.1| peptide chain release factor 2 [Chlorobium phaeobacteroides BS1] Length = 363 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 170/343 (49%), Gaps = 9/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + ++ E+E +E + + + I+ + +++ DL + Sbjct: 23 DVDERLHKIGELEQITTEENFWENQQEANKIVKEINDHKLWTEGFLALEKQTADLREELE 82 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E + E+ + I + EI + + DD + +L I AG GG+EA Sbjct: 83 IAEELGE--ESLAEEIDSRIGSIEQKIAEIEFKNMLSGKDDPGNALLTINAGAGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A + +K+ + D G K I G + +K E+GVHR+ R Sbjct: 141 WAEMLYRMYLRWAERKGFKIFTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +++ R HTS A+V PEA +++I ED+ + T R+ G GGQ+VN ++AVRI Sbjct: 201 VSPFDSNARRHTSFASVYSYPEAPPDAEIEIRKEDLELSTFRSGGKGGQNVNKVETAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 HIP+GI+V E+SQ QNR RA K+LRA+LY +R+ + A K +I G Sbjct: 261 KHIPSGIVVSCQQERSQFQNRERATKMLRAQLYKKQREEEEARKQAVEGTKKKIEWG--- 317 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI DHR N + +E VL G IDD I L+ Sbjct: 318 SQIRSYVMDDRRIKDHRTNYERHDIENVLDGDIDDFIEKYLSE 360 >gi|240850608|ref|YP_002972008.1| peptide chain release factor 2 [Bartonella grahamii as4aup] gi|240267731|gb|ACS51319.1| peptide chain release factor 2 [Bartonella grahamii as4aup] Length = 375 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 167/342 (48%), Gaps = 16/342 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R + + + D + E + I+ + + + +E +L + + + Sbjct: 30 KRLEYLNQKAEDPSLWDDAQQAQDMMRERQRLDDSINGLLSFTKTLEECIELIAMGEEES 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 I D + + +L D LE+ AG GG+E+ + Sbjct: 90 DVEIIADAENSIRNLKNEIDK-----RQIDVLLSGEADPNDTYLEVHAGAGGTESQDWAS 144 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + KVE+L D ++ G K + G + +K ESGVHR+ R+ Sbjct: 145 MLLRMYMRWAEQHEMKVEILEIHDGEEAGIKSATILVKGHNAYGMLKTESGVHRLVRISP 204 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ + HTS A++ V P I+VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI Sbjct: 205 FDSNAKRHTSFASIWVYPVIDDNIEVDVSEADVRIDTYRASGAGGQHVNTTDSAVRITHI 264 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERI 306 TGI+V +E+SQH+NR A +LRARLY+ E K+ E + + K +IG G +I Sbjct: 265 KTGIVVQCQTERSQHKNRATAWSMLRARLYEEELKKREEETNAAESSKTEIGWG---HQI 321 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R+Y + + D R + + VL G +D I L Sbjct: 322 RSYVLQPYQLVKDLRTGIENTDPQSVLNGNLDAFIEAALARR 363 >gi|296436914|gb|ADH19084.1| peptide chain release factor 2 [Chlamydia trachomatis G/11222] Length = 334 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 173/334 (51%), Gaps = 11/334 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D ++ + I+ + ++S +++ K + + + D S ++ Sbjct: 2 EQQAVQDGFWDDVVRAGKISERIARLKQQLSEFNELKNKVSAIQFFLEDEESSKDLEMQK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++E + E + E L L D SC L I AG GG+E+ +V L RMY R+ Sbjct: 62 ELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWVEMLLRMYMRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ W++EV+ D + G K I + G + K ESGVHR+ R+ +++ + HT Sbjct: 120 ASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSNAKRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI+V Sbjct: 180 SFASVEVFPEIDNKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGIVVSCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG- 314 +E+SQ QNR M +LRAR+Y + +++ +RK +I G +IR Y F Sbjct: 240 NERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQIRNYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R + ++ ++ G +D I L + Sbjct: 297 LVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 330 >gi|327267784|ref|XP_003218679.1| PREDICTED: peptide chain release factor 1, mitochondrial-like [Anolis carolinensis] Length = 443 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 135/363 (37%), Positives = 213/363 (58%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + D+ I ++++ + L++ +A + P+ + K+E QDL Sbjct: 71 QKYLQDVSQEHQSIGQLLNDNSISEYKRRDLSKRHAELFPLAVSFKEIQEAKKEMQDLEA 130 Query: 65 VIGDHNSDSEI--RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + NS E +LA E I+++IREL ++ +L+P+D D+ +LE+ +G T Sbjct: 131 LCAKLNSSEEKALLELAIEEKGVIDQKIRELYQKLFQILIPRDKYDECDVLLEVTSGRTT 190 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ YA + W E+ + ++ GG A ISG V+ +K+E Sbjct: 191 GGDICQQFTKEVFDMYQNYADYKCWTFEIRKYTPSEYGGLHHAAAYISGDDVYRHLKYEG 250 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P T S R+ HT +V VLP+ EI++ + +D+RIDT RA G+GGQHV Sbjct: 251 GIHRVQRIPETGLSSRMQRIHTGTMSVIVLPQLEEINIKVDPKDLRIDTFRAKGAGGQHV 310 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRI HIPTGI V E+SQ NR +AM+ L+ +LY +R +++ + RK+Q Sbjct: 311 NTTDSAVRIVHIPTGITVECQQERSQQVNREKAMQALKDKLYQQAIERELSQKQSARKMQ 370 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI+ + ++ +L G +D++IN LL A + + + Sbjct: 371 LGTRSQSERIRTYNFNQDRVSDHRISYEVRDIKGILSGKGVLDELINKLLEASEMESLNE 430 Query: 355 ASE 357 E Sbjct: 431 YLE 433 >gi|78187873|ref|YP_375916.1| peptide chain release factor 2 [Chlorobium luteolum DSM 273] gi|78167775|gb|ABB24873.1| bacterial peptide chain release factor 2 (bRF-2) [Chlorobium luteolum DSM 273] Length = 363 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 167/343 (48%), Gaps = 9/343 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + K + ++E + ++ S + Y++ + + + Sbjct: 23 DVDQRKEKIEDLEKVSGNPEFWNDQKAAHAVLKELNENRSWVEGYEKLAGKAESCRDELA 82 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + E+ A I + I + + DD + I+ I AG GG+EA Sbjct: 83 IADELED--ESFERELTASIDAIEQEIAAIEFKNMLSGKDDPGNAIITIHAGAGGTEAQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A + +KV + D G K I G + +K E+GVHR+ R Sbjct: 141 WAEMLYRMYMRWAERKGFKVYTDDYQEGDGAGIKTATLEIQGPYAYGYLKAENGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +++ R HTS A+V PEA ++++ ED+ + T R+ G GGQ+VN ++AVRI Sbjct: 201 VSPFDSNARRHTSFASVYTYPEAPPDVEIEVRKEDLELSTFRSGGKGGQNVNKVETAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRS 303 HIP+GI+V E+SQ QNR RAMK+L A+LY +R+ + +K +I G Sbjct: 261 KHIPSGIVVGCQQERSQFQNRERAMKMLMAQLYQRQREEEDARKREVEGKKKKIEWG--- 317 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI DHR N + +E VL G IDD + L+ Sbjct: 318 SQIRSYVLDDRRIKDHRTNYERFDVETVLDGDIDDFMEKYLSE 360 >gi|227889611|ref|ZP_04007416.1| peptide chain release factor RF2 [Lactobacillus johnsonii ATCC 33200] gi|268319827|ref|YP_003293483.1| Peptide chain release factor 2 [Lactobacillus johnsonii FI9785] gi|227849754|gb|EEJ59840.1| peptide chain release factor RF2 [Lactobacillus johnsonii ATCC 33200] gi|262398202|emb|CAX67216.1| Peptide chain release factor 2 [Lactobacillus johnsonii FI9785] Length = 332 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + K + Q + + D T + +D + ++ Sbjct: 1 MAEPGFWDNQEQAQSLINDTNRMKEKSENFKQLEAKFDDAQTALELLKADPDPELSEELS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ LL D D + ++EI G GG+EA + L RMY+RYAA Sbjct: 61 EEMVSLSQSF--HDYELSLLLSDKYDQHNALMEIHPGAGGTEAMDWADMLLRMYQRYAAS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 K E+ ++ G K + I G+ F +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 HDLKFEIEDYEPGEEAGVKSVSIRIQGKNAFGLLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + +VDI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDQSIEVDINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +LRA+L+ +E ++ + + Q G +IR+Y F + DH Sbjct: 239 SQLQNRETAMNMLRAKLFQLEEEKKRKQTEELKGNQKEIG-FGSQIRSYVFHPYNMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R N + V+ G +D+ I L Sbjct: 298 RTNFETSDVNGVMDGKLDNFIYAYLQW 324 >gi|120610527|ref|YP_970205.1| peptide chain release factor 2 [Acidovorax citrulli AAC00-1] gi|120588991|gb|ABM32431.1| bacterial peptide chain release factor 2 (bRF-2) [Acidovorax citrulli AAC00-1] Length = 300 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 161/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + ++ + +L+ + + + + + A ++R L E+ + + + Sbjct: 2 VVTLDKLTRELADNAELYEMSKEEGD-----EAGLLTIEAEAGKLRPLIEELEFRRMFSN 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++I+AG GG+EA + G L R Y +YA + +K V + D G K Sbjct: 57 EADPLNCFVDIQAGAGGTEACDWAGMLLRQYLKYAERKGFKATVEDETPGDVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++SG HTS A++ V PE + +++I D+R Sbjct: 117 KIEGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFASLFVYPEIDDSIEININPADVRT 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A + LR+RLYD E + Sbjct: 177 DTFRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYDFEMR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K +G G +IR+Y RI D R N+ + + VL G +D I Sbjct: 237 KRMEEQQKLEDTKTDVGWG---HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|109502759|ref|XP_001073018.1| PREDICTED: CG5705-like [Rattus norvegicus] gi|149050030|gb|EDM02354.1| rCG37077, isoform CRA_b [Rattus norvegicus] Length = 446 Score = 203 bits (515), Expect = 5e-50, Method: Composition-based stats. Identities = 114/360 (31%), Positives = 190/360 (52%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLT-EEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + + ++ + + + + + +A ++P+++ + +Q ++L + Sbjct: 77 QKYMEGLNDEYQSLDQCLQDISEDEGDRRASHRRHAELAPLVAVYQEIQEAEQAIEELES 136 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG----T 120 + N E + + + + L + + + T Sbjct: 137 MCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLEHLVPKEKCDRSNVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSYYKHWRFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + D+R+DT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPRDLRVDTFRARGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ RKLQ Sbjct: 317 NTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDKCQQQNARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L+G +D +I LL + + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAIAE 436 >gi|227821685|ref|YP_002825655.1| peptide chain release factor 2 [Sinorhizobium fredii NGR234] gi|227340684|gb|ACP24902.1| peptide chain release factor 2 protein [Sinorhizobium fredii NGR234] Length = 342 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 100/336 (29%), Positives = 166/336 (49%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + I+ + ++Q+ + +L + + + + Sbjct: 2 NNKAEDPTLWNDAGEAQKLMRERQQLDDSITGLRRFEQQLSDNIELIELGEEEGDSAIVT 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + + + + D LE+ +G GG+E+ + L RMY Sbjct: 62 EAEEALRQLRNEASK-----KQVEAMLSGEADQNDTYLEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + +KVE++ D ++ G K + G + +K ESGVHR+ R+ +++ R Sbjct: 117 SRWAERQGYKVELMEIQDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS +++ V P I +DI D RIDT R+SG+GGQHVNTTDSAVRITH+P+GI+V Sbjct: 177 RHTSFSSIWVYPVVDDSIQIDINEGDCRIDTYRSSGAGGQHVNTTDSAVRITHMPSGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRARLY+ E K+ + +A K IG G +IR+Y Sbjct: 237 QCQQERSQHKNRAKAWDMLRARLYEAELKKREDAANAEAASKTDIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +++ + L Sbjct: 294 PYQLVKDLRTGVESTSPGDVLDGELNEFMEAALAHR 329 >gi|255311271|ref|ZP_05353841.1| peptide chain release factor 2 [Chlamydia trachomatis 6276] gi|255317573|ref|ZP_05358819.1| peptide chain release factor 2 [Chlamydia trachomatis 6276s] gi|297748590|gb|ADI51136.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Chlamydia trachomatis D-EC] gi|297749470|gb|ADI52148.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Chlamydia trachomatis D-LC] Length = 334 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 174/334 (52%), Gaps = 11/334 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D ++ + I+ + ++S +++ K + + + D S ++ Sbjct: 2 EQQAVQDGFWDDVVRAGKISERIARLKQQLSEFNELKNKVSAIQFFLEDEESSKDLEMQK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++E + E + E L L D SC L I AG GG+E+ +V L RMY R+ Sbjct: 62 ELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWVEMLLRMYMRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ W++EV+ D + G K I + G + K ESGVHR+ R+ +++ + HT Sbjct: 120 ASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSNAKRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI+V Sbjct: 180 SFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGIVVSCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG- 314 +E+SQ QNR M +LRAR+Y + +++ +RK +I G +IR Y F Sbjct: 240 NERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQIRNYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R + ++ ++ G +D I L + Sbjct: 297 LVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 330 >gi|110634059|ref|YP_674267.1| peptide chain release factor 2 [Mesorhizobium sp. BNC1] gi|110285043|gb|ABG63102.1| bacterial peptide chain release factor 2 (bRF-2) [Chelativorans sp. BNC1] Length = 322 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E ++ I+ I+ + + +L + + + + + Sbjct: 1 MRERQSLEENINAINGLSRSLDDNVELIKLGEEEGDAGIVEEAESAIRSLRGEISA---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A R KVE L D Sbjct: 57 -RQIETLLSGEADANDTYLEVHAGAGGTESQDWALMLLRMYTRWAERRGMKVETLEVHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVHGHNAYGWLKTESGVHRLVRISPFDSNARRHTSFASIWVYPVIDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 ++IP ++RIDT R+SG+GGQHVNTTDSAVRITHIPTGI + E+SQH+NR +A ++L Sbjct: 176 IEIPESEVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIAVACQQERSQHKNRAKAWEML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ +A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYELELKKREEAANATEASKSDIGWG---HQIRSYVLQPYQLVKDLRTGVESPSPQD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L+ Sbjct: 293 VLDGDLDEFMKASLSQR 309 >gi|261867765|ref|YP_003255687.1| peptide chain release factor 2 [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413097|gb|ACX82468.1| peptide chain release factor 2 [Aggregatibacter actinomycetemcomitans D11S-1] Length = 300 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 96/305 (31%), Positives = 159/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 ++ I +Q ++ L + + + + + + ++ + + Sbjct: 2 VNTIKNLEQGLEDVDGLLELAVEAGDEDTFNEAITE-----LNALEQQLEKLEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 57 EHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 +SG F ++ E+G+HR+ R +++ R HTS + V PE + D+RI Sbjct: 117 KVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITHIP+GI+V +++SQH+N+ +AMK L+A+LY++E + Sbjct: 177 DVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQ 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + ++ + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 KKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDRFIE 293 Query: 342 PLLTA 346 L A Sbjct: 294 ASLKA 298 >gi|15594420|ref|NP_212208.1| peptide chain release factor 2 [Borrelia burgdorferi B31] gi|2687953|gb|AAC66459.1| peptide chain release factor 2 (prfB) [Borrelia burgdorferi B31] Length = 348 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + + A S + +KI +++ + +DL + Sbjct: 12 NEIQAKIEKYEKEINQKNFWNDPKRAQKVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 71 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 72 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 126 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 127 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 185 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 186 PFDAAKKRHTSFASVFVDPVIDDKIEITIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 245 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 246 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 302 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 303 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 344 >gi|325953656|ref|YP_004237316.1| peptide chain release factor 2 [Weeksella virosa DSM 16922] gi|323436274|gb|ADX66738.1| peptide chain release factor 2 [Weeksella virosa DSM 16922] Length = 366 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 96/362 (26%), Positives = 159/362 (43%), Gaps = 24/362 (6%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 + Q D++ R + E + + D K + I Sbjct: 1 MFNFDQYKDIQKRIQALYTYLEIEQKRIQVTNDEEKTASPDFWDDPKKAEMFMKELRSIK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y+ +Q DL +I + + Q K + +E + + D Sbjct: 61 KWIEDYESVEQAANDLEVLIEFNKEGEVSDEEVQEHYSKTIKLLENIE----FKNMLSDE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D+ IL+I AG GG+E+ + L RMY +A +KV L+ D G K + Sbjct: 117 GDNLGAILQITAGAGGTESCDWASMLMRMYLMWAESHGYKVRELNFQAGDVAGVKTVTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS + V P E ++DI DI + Sbjct: 177 IDGEFAFGWLKGENGVHRLVRISPFDSNAKRHTSFVSAYVSPMVDETIEIDINPADIEMQ 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ G+GGQ+VN ++ V++TH PTGI+V E+SQ NR RAM++L++ LY +E + Sbjct: 237 TSRSGGAGGQNVNKVETKVQLTHKPTGIVVICQIERSQLANRERAMEMLKSELYKIELDK 296 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPL 343 R+ ++ + +IR Y + + D R ++ V+ G ID + Sbjct: 297 KMAARNEIESNKMK-IEWGSQIRNYVMHPYKLVKDVRTGTETGNVDAVMNGDIDQFLKSY 355 Query: 344 LT 345 L Sbjct: 356 LM 357 >gi|159474546|ref|XP_001695386.1| hypothetical protein CHLREDRAFT_49544 [Chlamydomonas reinhardtii] gi|158275869|gb|EDP01644.1| hypothetical protein CHLREDRAFT_49544 [Chlamydomonas reinhardtii] Length = 336 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 146/307 (47%), Positives = 197/307 (64%), Gaps = 8/307 (2%) Query: 33 IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRE 92 + EYA + P+ S Q + E DL + D D+ +R +A E A+ +E + Sbjct: 8 RDVGREYARLQPLAHGYSRLLQVRAELSDLAGLARDP--DAGVRAMAADEAAALRQEAAD 65 Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER-----YAALRKWKV 147 L + L+P + + +LE+RAG GG+EAALF +L MY R A R W Sbjct: 66 LTRRLLLALVPPEPSASRPALLEVRAGAGGAEAALFASELLAMYRRLAQARTCASRGWTW 125 Query: 148 EVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL 207 EVL +++ GG + +G GV+ + ESGVHRVQRVP TEA GR+HTS A V VL Sbjct: 126 EVLELGNSEHGGVRHATVAGAGEGVYGVLSGESGVHRVQRVPVTEAGGRLHTSTAAVVVL 185 Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P+A E+DV + ED+R++TMRASG+GGQHVN TDSAVRITH+PTG++V +E+SQH NR Sbjct: 186 PQADEVDVRLREEDLRVETMRASGAGGQHVNVTDSAVRITHLPTGLVVSCQNERSQHLNR 245 Query: 267 LRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 A+KVLR+RLYD+E +R A + R + SGDRSER+RTYNF QGR+TDHRI+LT++ Sbjct: 246 AAALKVLRSRLYDLEAQRRARQAGEQRSALVASGDRSERVRTYNFPQGRVTDHRIHLTVH 305 Query: 327 KLEYVLQ 333 L VL+ Sbjct: 306 DLGSVLE 312 >gi|255348832|ref|ZP_05380839.1| peptide chain release factor 2 [Chlamydia trachomatis 70] gi|255503372|ref|ZP_05381762.1| peptide chain release factor 2 [Chlamydia trachomatis 70s] gi|255507050|ref|ZP_05382689.1| peptide chain release factor 2 [Chlamydia trachomatis D(s)2923] gi|296435060|gb|ADH17238.1| peptide chain release factor 2 [Chlamydia trachomatis E/150] gi|296438780|gb|ADH20933.1| peptide chain release factor 2 [Chlamydia trachomatis E/11023] Length = 334 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 109/334 (32%), Positives = 172/334 (51%), Gaps = 11/334 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D + + I+ + ++S +++ K + + + D S ++ Sbjct: 2 EQQAVQDGFWDDVARAGKISERIARLKQQLSEFNELKNKVSTIQFFLEDEESSKDLEMQK 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 ++E + E + E L L D SC L I AG GG+E+ +V L RMY R+ Sbjct: 62 ELEKEFVFCEKKITE--WETLRLLSGELDRNSCFLSINAGAGGTESCDWVEMLLRMYMRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A+ W++EV+ D + G K I + G + K ESGVHR+ R+ +++ + HT Sbjct: 120 ASSHSWRIEVIDRLDGEVAGIKHITLKLVGEYAYGYAKAESGVHRLVRISPFDSNAKRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI+V Sbjct: 180 SFVSVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGIVVSCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG- 314 +E+SQ QNR M +LRAR+Y + +++ +RK +I G +IR Y F Sbjct: 240 NERSQIQNREACMNMLRARIYQKLLQERLEKQNIDRKNKKEISWG---SQIRNYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R + ++ ++ G +D I L + Sbjct: 297 LVKDVRTGYEVGNIQAMMDGELLDAFIKAYLVDY 330 >gi|28210088|ref|NP_781032.1| peptide chain release factor 2 [Clostridium tetani E88] gi|28202524|gb|AAO34969.1| bacterial peptide chain release factor 2 [Clostridium tetani E88] Length = 325 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 100/328 (30%), Positives = 163/328 (49%), Gaps = 6/328 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + + E I ++ +D + +D +I + +I ++ Sbjct: 1 MQEPDFWEDIKRAQEVTQQEKLIKDRLEKFDSLENRIEDSLVLIELMKEEEDISSAGEVL 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + I L D + I+ + AG GG++A + L RMY R+A Sbjct: 61 KELVLLKKEIESFRIEVL--LSGEYDRNNAIMTLHAGVGGTDAQDWTEMLLRMYTRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KV+ L D+ G K + I+G + +K E GVHR+ R+ A+G+ TS A Sbjct: 119 KGYKVDTLDFLPGDEAGIKSVTLKITGDFAYGYLKAEKGVHRIVRISPYNANGKRQTSFA 178 Query: 203 TVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ + + D++I +D+++DT RASG+GGQHVN T+SAVRITHIPTGI+V SE+ Sbjct: 179 SLELIPELTEDQDIEIIDDDLKVDTYRASGAGGQHVNKTESAVRITHIPTGIVVQCQSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH NR A+K+L+A+L +++ + ++ +IR+Y F + DH Sbjct: 239 SQHSNRDTALKMLKAKLVELKEAEHKEKIEDLT-GELKDMGWGSQIRSYVFHPYNLVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R + L V+ G ID IN L A+ Sbjct: 298 RTSAETGNLTAVMDGDIDLFINEYLKAN 325 >gi|255528153|ref|ZP_05394980.1| peptide chain release factor 2 [Clostridium carboxidivorans P7] gi|255508166|gb|EET84579.1| peptide chain release factor 2 [Clostridium carboxidivorans P7] Length = 326 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 102/332 (30%), Positives = 170/332 (51%), Gaps = 12/332 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E + ++T E + + K + K Q+ + L + + N S +D+ Sbjct: 1 MQEPNFWNDTDKAQEITSEERFLKSRLDKYKELETKIQDAEFLTKLAIEENDLSSSKDII 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + +L D + I++I G GG++A + L RMY R+ Sbjct: 61 REVEEIDNET-----ERFRIEILLSGEYDKNNAIMDIHVGVGGTDAQDWTEMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K+E + +D G K I G + +K E G+HR+ R+ A+G+ T Sbjct: 116 AEKKGFKIETVDILPAEDAGIKSATLRIIGEFAYGYLKAEKGIHRLVRISPFNANGKRQT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE D+DI +DI++DT R+SG+GGQHVN T+SA+RITHIPTGI+V Sbjct: 176 SFASIEVLPELTNNQDIDIKPDDIKVDTYRSSGAGGQHVNKTESAIRITHIPTGIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +++SQH NR AM++L+A+L +++ +R E+ + ++ +IR+Y F + Sbjct: 236 NQRSQHHNREEAMRMLKAKLAELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFQPYTMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 DHR ++ + V+ G ID IN L + Sbjct: 295 KDHRTSVECGNINAVMDGDIDQFINEYLKQYN 326 >gi|193786181|dbj|BAG51464.1| unnamed protein product [Homo sapiens] Length = 445 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 211/363 (58%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D+GG A ISG GV+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADNGGLHHAAARISGDGVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|332531395|ref|ZP_08407299.1| hypothetical protein HGR_15544 [Hylemonella gracilis ATCC 19624] gi|332039064|gb|EGI75486.1| hypothetical protein HGR_15544 [Hylemonella gracilis ATCC 19624] Length = 248 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 136/249 (54%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D L+I+AG GG+EA + L R Y +YA + +K V + D G K Sbjct: 1 MFNNPADPLPAFLDIQAGAGGTEACDWASMLLRQYLKYAERKGFKATVEDETPGDTAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E+GVHR+ R ++SG HTS A++ V PE + +++I Sbjct: 61 SATIKIEGDYAFGLLRTETGVHRLVRKSPFDSSGGRHTSFASIFVYPEIDDTIEIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A K LR+RLYD Sbjct: 121 DVRTDTFRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWKRLRSRLYD 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y Q RI D R N + VL G +D Sbjct: 181 FEMRKRMEEQQKLEDTKTDVGWG---HQIRSYVLDQSRIKDLRTNYETSATQKVLDGDLD 237 Query: 338 DIINPLLTA 346 I L Sbjct: 238 PFIEASLKQ 246 >gi|28493165|ref|NP_787326.1| peptide chain release factor 2 [Tropheryma whipplei str. Twist] gi|28572722|ref|NP_789502.1| peptide chain release factor 2 [Tropheryma whipplei TW08/27] gi|28410855|emb|CAD67240.1| peptide chain release factor 2 [Tropheryma whipplei TW08/27] gi|28476205|gb|AAO44295.1| peptide chain release factor RF-2 [Tropheryma whipplei str. Twist] Length = 376 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 108/350 (30%), Positives = 169/350 (48%), Gaps = 11/350 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L R AE+ R+S+ + + +S +++ + + ++ ++ + Sbjct: 29 LSKRIAELTARVSDPDLWTTPDRAQQIARELSITKAQLDRLTNLEAQLDEMRVLVTLLEN 88 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + L + A N + + + D +L IRAG GG +AA F Sbjct: 89 EHDAGLLDEGSRKAKLLLEEA--NHLLIQNMLNNEYDCYPAVLTIRAGAGGIDAADFAQM 146 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + V+ S ++ G + I F ++ ESG HR+ R+ Sbjct: 147 LLRMYIRWAQKHSSEAIVMDISYAEEAGIRSATLRIDLPFAFGKLHQESGTHRLVRISPF 206 Query: 192 EASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ HTS A V V+P ++I ++IRID R+SG GGQ VNTTDSAVRITH+P Sbjct: 207 NAAGKRHTSFAAVEVIPLLEEVSSIEITNDEIRIDVFRSSGPGGQSVNTTDSAVRITHLP 266 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GDRSERIR 307 TGI+V +EKSQ QNR AM++LRARL +R+ E +A RK G+ E++R Sbjct: 267 TGIVVSCQNEKSQIQNRESAMRILRARLLLNKRQ----EEAAIRKELAGNIVASWGEQVR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 Y + + + D R + V G ID I+ + H K I + + Sbjct: 323 NYVLAPYQLVKDLRSLHESSMPDKVFDGDIDGFIDAGIKWHAQKHILNQN 372 >gi|295395219|ref|ZP_06805427.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC 49030] gi|294971981|gb|EFG47848.1| peptide chain release factor RF2 [Brevibacterium mcbrellneri ATCC 49030] Length = 376 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 169/347 (48%), Gaps = 15/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + LK+ AE+ + D + +S + + Q +D+ + Sbjct: 24 DVEQLKSEVAELTEAAAAPDLWDDPDVAQAITSKLSHKQGTLEKLQKFDQRIEDVELLVS 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G+ D + + A EV ++ E+ LE L D++S ++ +RAG GG +A Sbjct: 84 MGEDEGDEDALNEAAAEVEKLKSELAALEI----STLLSGEFDERSAVITVRAGAGGDDA 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R +KVE L +S + G K ++ + + E+G HR+ Sbjct: 140 TDWAQMLTRMYIRWAENRGYKVEELDTSYAEGAGVKSATVQVNAPYAYGTLSVEAGTHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P +DI D+RID R+SG GGQ VNTTDSAV Sbjct: 200 VRISPFDNQGRRQTSFAAVEVVPLIEQTDHIDIDENDLRIDVFRSSGPGGQSVNTTDSAV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS--GD 301 RITH+PTG++V+ +EKSQ QNR AM+VL++RL ++R+ + +K G Sbjct: 260 RITHVPTGVVVSMQNEKSQIQNRAAAMRVLQSRLLQLKREEEEAQ----KKDLAGDIKAS 315 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +++R+Y + + D R + + V G IDD + + Sbjct: 316 WGDQMRSYVTHPYQMVKDLRTGYEVNNPQAVFDGDIDDFLEAGIRWR 362 >gi|299469865|emb|CBN76719.1| conserved unknown protein [Ectocarpus siliculosus] Length = 364 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 148/360 (41%), Positives = 224/360 (62%), Gaps = 10/360 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +++ +K R EI M++ V + +E + ++ + ++K E QDL Sbjct: 1 MRQRLEHMKGRHEEIVESMTKGEVPVREMGSVGKELGRLEAVLDLQAKVEEKAAEIQDLE 60 Query: 64 TVIGD-----HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 V+ +D E+ +A+ E + +L ++ LLLP+D D K+ +LE+R+ Sbjct: 61 EVMQATNAGGAEADREMHGIAKEEHADCTAALEKLRLDLTSLLLPRDEGDSKNALLEVRS 120 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G+GG EAA F +LF MY R+A L+ WK E ++ S D GGY+E A+I G V+ +KF Sbjct: 121 GSGGDEAAAFAKELFEMYRRFAELKGWKFEGMTCSSIDAGGYREASASIRGEDVYGSLKF 180 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E+GVHRVQRVP+ S R+HTSAA+V V+ EA E+D+ + D+R + RASG+GGQHVN Sbjct: 181 ENGVHRVQRVPS--NSPRLHTSAASVVVMMEAEEMDLKLEQSDLRFEAFRASGAGGQHVN 238 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TT+SAVRITH+PTGI + E+SQH N+ +A+KVLR+R+++V R +A + +A R + Sbjct: 239 TTESAVRITHVPTGITASIQDERSQHSNKEKALKVLRSRVFEVRRDEIARKEAAVRASAV 298 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 GSGDRSERIRTYNF Q RITDHR N + + E +++G + D + + Q++ + +A Sbjct: 299 GSGDRSERIRTYNFPQDRITDHRANYSRHGWEAMMRGEMLGDFLEAMRDKTQSEQLKAAG 358 >gi|218660225|ref|ZP_03516155.1| peptide chain release factor 2 [Rhizobium etli IE4771] Length = 350 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + I+ + +Q+ + +L + + S ++ Sbjct: 2 NNKAEDPNLWNDASEAQKLMRERQQLDDGINGVKQLEQQLNDNIELIELGEEEGDQSVVK 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + R + D LE+ +G GG+E+ + L RMY Sbjct: 62 EAEDTLKALKAEAAR-----RQVEAMLSGEADGNDTYLEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A +++KVE+L D ++ G K + G + +K ESGVHR+ R+ +++ R Sbjct: 117 TRWAERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS +++ V P I ++I D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 177 RHTSFSSIWVYPVVDDSIQIEINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRAR+Y+ E K+ + +A K IG G +IR+Y Sbjct: 237 QCQQERSQHKNRAKAWDMLRARMYEAELKKREDAANAEAASKTDIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +++ + L Sbjct: 294 PYQLVKDLRTGVASTAPDDVLDGDLNEFMEAALAHR 329 >gi|15611227|ref|NP_222878.1| peptide chain release factor 2 [Helicobacter pylori J99] gi|7388058|sp|Q9ZMR1|RF2_HELPJ RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|4154673|gb|AAD05740.1| PEPTIDE CHAIN RELEASE FACTOR 2 (RF-2) [Helicobacter pylori J99] Length = 363 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 99/343 (28%), Positives = 178/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKMKNSLDESVELFELA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ + + ++ ++ +D + I+ I+ G GG+E+ Sbjct: 87 QNDSD-----EVTLSLLYEEAPTLEHSVQKVEIEIMLSGENDASNAIITIQPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A + +K E+L D ++ G K + I G + +K E+GVHR+ Sbjct: 142 DWASILYRMYLRWAERKSFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNENGVHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN T+SAVR Sbjct: 202 RISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNKTESAVR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + K +IG G Sbjct: 262 ITHFPTGIVVQCQNDRSQHKNKASALKMLKSKLYELELEKQQSSAKNEEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + ++ D R N+ +E +L G ID I+ +L A Sbjct: 319 QIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 361 >gi|194333053|ref|YP_002014913.1| peptide chain release factor 2 [Prosthecochloris aestuarii DSM 271] gi|194310871|gb|ACF45266.1| peptide chain release factor 2 [Prosthecochloris aestuarii DSM 271] Length = 381 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 102/341 (29%), Positives = 162/341 (47%), Gaps = 5/341 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + + E+E +E + + I+ + + + + + Sbjct: 42 DIDERLKKIEELEQITAEPDFWNDQKEAHRIVKEINEHKTWTDDFQKIAADVASRQEEVE 101 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + E+ I + + + DD + +L I AG GG+EA Sbjct: 102 IAEELED--ESLGSEIAGGIDSIEKEITALESKNMLSGKDDPGNALLTINAGAGGTEAQD 159 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A + +KV + + + G K I G + +K E+GVHR+ R Sbjct: 160 WAQMLYRMYMRWAERKGYKVFMDDYQEGEGAGIKTATLEIVGPYAYGYLKAENGVHRLVR 219 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V +++ R HTS A+V PEA ++DI ED+ + T R+ G GGQ+VN ++AVRI Sbjct: 220 VSPFDSNARRHTSFASVYTYPEAPPDAEIDIRKEDLELSTFRSGGKGGQNVNKVETAVRI 279 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIP+GI+V E+SQ QNR RA+K+L A+LY +R+ + A Q + + Sbjct: 280 KHIPSGIVVSCQQERSQFQNRERAIKMLMAQLYKKQREEEEARKQAVE-GQKMKIEWGSQ 338 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y RI DHR N + +E VL G IDD I L+ Sbjct: 339 IRSYVMDDRRIKDHRTNHERHDIEAVLDGDIDDFIEKYLSE 379 >gi|332703829|ref|ZP_08423917.1| peptide chain release factor 2 [Desulfovibrio africanus str. Walvis Bay] gi|332553978|gb|EGJ51022.1| peptide chain release factor 2 [Desulfovibrio africanus str. Walvis Bay] Length = 368 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 114/339 (33%), Positives = 189/339 (55%), Gaps = 12/339 (3%) Query: 14 NRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 R +IE +S + D +LT +E IS + ++++ + +QE ++ + + Sbjct: 32 ERLRQIEDALSRPGAWDKPDRLTPMLQEKRQISEKLERLTVLHKTRQEVEEWLDLARE-- 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + ++E ++ + +D S I+EI +G GG+EA + Sbjct: 90 ---DQTQEVLAILSEQLDVLQERLKDVELREMLAGPEDQNSAIMEIHSGAGGTEAQDWAE 146 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R++ + +KV +L + ++ G+K + + G + +K ESG+HR+ R+ Sbjct: 147 MLLRMYRRWSERQGYKVSILDFLEGEEAGFKSVTVQVEGLYAYGMLKGESGIHRLIRISP 206 Query: 191 TEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 + SGR HTS A+VAV P+ +ID+D+ ED+RID RASG+GGQHVN T+SAVRITH+ Sbjct: 207 FDTSGRRHTSFASVAVYPDVGTDIDIDVREEDLRIDVFRASGAGGQHVNKTESAVRITHL 266 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTG++ +EKSQ +N+ A+K+L+ARLY++E K++A R A + + + +IRT Sbjct: 267 PTGVVAQCQNEKSQLRNKETALKILKARLYELELKKIAAARQAEYESK-DTIAWGSQIRT 325 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y R + DHR + + +E VL G ID +I L Sbjct: 326 YTLQPYRLVKDHRTGMEIGDVEAVLNGEIDPLIRNFLLE 364 >gi|307546434|ref|YP_003898913.1| peptide chain release factor 2 [Halomonas elongata DSM 2581] gi|307218458|emb|CBV43728.1| peptide chain release factor 2 [Halomonas elongata DSM 2581] Length = 301 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 107/306 (34%), Positives = 164/306 (53%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 ++ I ++ + +DL + D++ D E+ ++ ++ +LE + + Sbjct: 2 VVDTIDTLERGLNDNRDLLELAEMEE-DADTVDEVSRELESLRADLEKLE----FRRMFA 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D + L+I+AG+GG+EA + L RMY R+A +K +++ S + G K Sbjct: 57 GEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWAEHHGFKADLIELSAGEVAGIKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIR 223 I G F ++ E+GVHR+ R ++ GR HTS A+V + PE +V+I D+R Sbjct: 117 VHIQGEYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFASVFLSPEVDDSFEVEINPSDLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 +DT R+SG+GGQHVNTTDSAVRITH PTGI+V S++SQH NR AMK LRA+L++ E Sbjct: 177 VDTYRSSGAGGQHVNTTDSAVRITHEPTGIVVACQSQRSQHANRDFAMKQLRAKLWEHEM 236 Query: 283 KRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 + + + + K IG G +IR+Y RI D R + E VL G +D I Sbjct: 237 DKRNAAKQAAEDSKADIGWG---SQIRSYVLDDQRIKDLRTGVQSSSCEKVLDGDLDQFI 293 Query: 341 NPLLTA 346 L Sbjct: 294 EASLKQ 299 >gi|256424469|ref|YP_003125122.1| peptide chain release factor 2 [Chitinophaga pinensis DSM 2588] gi|256039377|gb|ACU62921.1| bacterial peptide chain release factor 2 (bRF- 2) [Chitinophaga pinensis DSM 2588] Length = 362 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 88/350 (25%), Positives = 159/350 (45%), Gaps = 19/350 (5%) Query: 11 DLKNRFAEIE---LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 D+++R A+IE D + T I + +Y+ + +D ++ Sbjct: 21 DVQDRIAKIENDKQLTLAPGFWDDNARATSILKEIKVNKFWVDLYENVQTSIEDSAVLLD 80 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + A + + ELE + + +D+ +L I +G GG+E+ Sbjct: 81 FQKEGEASEEEVAQAYHAATEALDELE----FKSTLNEPEDEMPAVLTINSGAGGTESQD 136 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY Y + WKV + D G K + G + +K ESGVHR+ R Sbjct: 137 WAEMLLRMYRMYGEKQGWKVSEIDVQYGDGAGIKSASLEMDGSFAYGLLKAESGVHRLVR 196 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS A++ V P + + D+ + R+ G GGQ+VN ++AVR+ Sbjct: 197 ISPFDANARRHTSFASIFVYPLVDDTIEIAVNPADLVWEFYRSGGKGGQNVNKVETAVRL 256 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY----DVERKRMANERSANRKLQIGSGD 301 H+P+GI++ ++Q +NR +A+ +L++RLY + + RK++ GS Sbjct: 257 KHVPSGIIIECQQARTQGENREKALTMLKSRLYEEELRKREELKNAANANKRKIEWGS-- 314 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F I DHR + + ++ V+ G ++ I L + + Sbjct: 315 ---QIRSYVFHPYKMIKDHRTDYEVGNVQPVMDGELEGFIKAYLMMSKGE 361 >gi|34577120|ref|NP_004285.2| peptide chain release factor 1, mitochondrial precursor [Homo sapiens] gi|114651371|ref|XP_509647.2| PREDICTED: peptide chain release factor 1, mitochondrial isoform 5 [Pan troglodytes] gi|114651373|ref|XP_001150158.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 3 [Pan troglodytes] gi|114651375|ref|XP_001150218.1| PREDICTED: mitochondrial translational release factor 1 isoform 4 [Pan troglodytes] gi|62512140|sp|O75570|RF1M_HUMAN RecName: Full=Peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|27503783|gb|AAH42196.1| Mitochondrial translational release factor 1 [Homo sapiens] gi|55958420|emb|CAI16615.1| mitochondrial translational release factor 1 [Homo sapiens] gi|119629053|gb|EAX08648.1| mitochondrial translational release factor 1, isoform CRA_a [Homo sapiens] gi|119629054|gb|EAX08649.1| mitochondrial translational release factor 1, isoform CRA_a [Homo sapiens] gi|119629056|gb|EAX08651.1| mitochondrial translational release factor 1, isoform CRA_a [Homo sapiens] gi|119629058|gb|EAX08653.1| mitochondrial translational release factor 1, isoform CRA_a [Homo sapiens] Length = 445 Score = 202 bits (514), Expect = 6e-50, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 210/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG GV+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|29839933|ref|NP_829039.1| peptide chain release factor 2 [Chlamydophila caviae GPIC] gi|29834280|gb|AAP04917.1| peptide chain release factor 2 [Chlamydophila caviae GPIC] Length = 337 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 113/336 (33%), Positives = 171/336 (50%), Gaps = 11/336 (3%) Query: 18 EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 E+E + + + ++ + +IS Y++ K + +L + D + S+ Sbjct: 3 ELEDQTLKEDFWQDVAHAGKVSERVASLKRQISDYEEFKSKVDNLTFFLNDSEASSDPE- 61 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + ++ + E L D C L I AG GG+E+ +V LFRMY Sbjct: 62 -LREDLEKEFSVCETILAEWETQRLLSGEVDKNPCFLTINAGAGGTESCDWVEMLFRMYS 120 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+A+ +WK EV+ + D G K I SG + K E GVHR+ R+ +++ + Sbjct: 121 RWASHHQWKAEVIDRQEGDVAGIKHITVKFSGEYAYGYAKAERGVHRLVRISPFDSNAKR 180 Query: 198 HTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS A+V V P EI++DI D+RIDT R+SG+GGQHVN TDSAVRITHIPTGI+V Sbjct: 181 HTSFASVDVYPEIDDEIEIDIRPNDLRIDTYRSSGAGGQHVNVTDSAVRITHIPTGIIVS 240 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQ 313 SE+SQ QNR MK+LRAR+Y + ++ +RK +I G +IR Y F Sbjct: 241 CQSERSQIQNRESCMKMLRARMYQQVLQERLEKQLLDRKNKKEIAWG---SQIRNYVFQP 297 Query: 314 G-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 + D R ++ ++ G +DD + L + Sbjct: 298 YTLVKDMRTGHETGNVQAMMDGELLDDFVKAYLAEY 333 >gi|62259280|gb|AAX77849.1| unknown protein [synthetic construct] Length = 360 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 104/334 (31%), Positives = 171/334 (51%), Gaps = 17/334 (5%) Query: 19 IELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 +E+ + + D L ++ + ++ + + + E Sbjct: 25 LEMELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELGEE 77 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + E+ + + ++ + + D + L+I++G+GG+EA + L RM Sbjct: 78 DESLMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRM 137 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A +KV V SD D G K I G + ++ E+G+HR+ R +++ Sbjct: 138 YMRWADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNS 197 Query: 196 RVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 + HTS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+ Sbjct: 198 KRHTSFASVFISPEVDDDIDIEINPTDLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIV 257 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNF 311 V + S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Sbjct: 258 VQSQSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVL 314 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q RI D R + + VL G +D I L Sbjct: 315 DQSRIKDLRTGVENTNTQAVLDGDLDKFIEASLK 348 >gi|257054828|ref|YP_003132660.1| peptide chain release factor 2 [Saccharomonospora viridis DSM 43017] gi|256584700|gb|ACU95833.1| bacterial peptide chain release factor 2 (bRF-2) [Saccharomonospora viridis DSM 43017] Length = 368 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 105/367 (28%), Positives = 172/367 (46%), Gaps = 28/367 (7%) Query: 9 ICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPIISKISIY 52 + DL + A++E M + + + +S + + Sbjct: 9 LKDLGGKLAQVEAVMDLDALRREVAELEEEAARPDLWNDPEVAQRVTSQLSHKQASLRKV 68 Query: 53 DQKKQEEQDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + +Q DL + + + D A+ E+ + K++ LE L D++ Sbjct: 69 SELRQRVDDLGVLHELAEAEGDKASLAEAEAELAQLTKDVNALEV----RTLLSGEYDER 124 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 + ++ IR+ GG +AA + L RMY R+A + E+ S ++ G + ISG Sbjct: 125 NAVVTIRSEAGGVDAADWAEMLLRMYLRWAERHNYPTEIYDISYAEEAGIRSATFKISGP 184 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRA 229 ++ + E G HR+ R+ + R TS A V VLPE E V+IP +DIR+D R+ Sbjct: 185 YLYGTLSVEQGTHRLVRISPFDNQNRRQTSFAHVEVLPEVEEIDHVEIPEKDIRVDVYRS 244 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQ VNTTDSAVRITH+PTGI+V +EKSQ QN+ AMKVL+A+L +++ E Sbjct: 245 SGPGGQSVNTTDSAVRITHLPTGIVVSCQNEKSQLQNKASAMKVLQAKLLQRKKEEERAE 304 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 A R G+ ++R+Y + + D R + + VL G +D + + Sbjct: 305 LDALRDSGSSWGN---QMRSYVLHPYQLVKDLRTDYEVGNPSAVLDGELDGFLEAGIRWR 361 Query: 348 QAKMIGS 354 + + + Sbjct: 362 KQQAEAA 368 >gi|157738274|ref|YP_001490958.1| peptide chain release factor 2 [Arcobacter butzleri RM4018] gi|315636563|ref|ZP_07891799.1| peptide chain release factor RF2 [Arcobacter butzleri JV22] gi|166977372|sp|A8EWG5|RF2_ARCB4 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|157700128|gb|ABV68288.1| peptide chain release factor 2 [Arcobacter butzleri RM4018] gi|315479212|gb|EFU69909.1| peptide chain release factor RF2 [Arcobacter butzleri JV22] Length = 365 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 103/343 (30%), Positives = 175/343 (51%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE---QDLHTVI 66 L R EI+ + + T+ + I+ K++ +++ +L+ + Sbjct: 27 DILNKRLEEIKNEEASQDFWNDVENATKIGIEKNRILGKLNKFNKAFDSLTGTNELYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + + ++ L ++ + DD + I+ I G GG+E+ Sbjct: 87 TAEKDDETLE-----MLYEEASDLENLIKSTEISVMLSNPDDSSNAIVSIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A +KVE+L D+ G K++ I G + MK E+G+HR+ Sbjct: 142 DWASILYRMYLRWAERNDFKVELLDYQAGDEAGIKDVSFIIKGENAYGYMKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS ++V V PE + I +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFSSVMVSPEIDDNINIVIEDKDIRIDTYRASGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHIPTGI+V +++SQH+N+ A K+L++RLY+ E ++ + K G G Sbjct: 262 ITHIPTGIVVQCQNDRSQHKNKDSAFKMLKSRLYEYELEKQRASKDGIEKSDNGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y ++ D R N+ ++ +L G I +I +L A Sbjct: 319 QIRSYVLQPYQQVKDSRSNIGYSNVDAILDGDITKMIEDVLIA 361 >gi|254973803|ref|ZP_05270275.1| peptide chain release factor 2 [Clostridium difficile QCD-66c26] gi|260681922|ref|YP_003213207.1| peptide chain release factor 2 [Clostridium difficile CD196] gi|260685520|ref|YP_003216653.1| peptide chain release factor 2 [Clostridium difficile R20291] gi|260208085|emb|CBA60326.1| peptide chain release factor 2 [Clostridium difficile CD196] gi|260211536|emb|CBE01711.1| peptide chain release factor 2 [Clostridium difficile R20291] Length = 338 Score = 202 bits (513), Expect = 7e-50, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 175/337 (51%), Gaps = 16/337 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E +M++ + ++ +E ++ + + ++ + L + + + DS R Sbjct: 8 EEKMNQQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLIEIGLEEDDDSVER 67 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ + EK L D + IL I AGTGG +A + L RMY Sbjct: 68 DIEKSIESMEEKLSEM-----KIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMY 122 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R++ + +KV++L + + G K + G + +K E GVHR+ R+ + SG+ Sbjct: 123 IRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSGK 182 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A++ V PE I+V+I D++IDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 183 RHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVV 242 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFS 312 +E+SQH N+ RAM++L A+L +++ + + QI G +IR+Y F Sbjct: 243 QCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQITWG---SQIRSYVFQ 299 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + DHR N ++ V+ G ID IN L ++ Sbjct: 300 PYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNK 336 >gi|296452520|ref|ZP_06894217.1| peptide chain release factor RF2 [Clostridium difficile NAP08] gi|296881068|ref|ZP_06905011.1| peptide chain release factor RF2 [Clostridium difficile NAP07] gi|296258625|gb|EFH05523.1| peptide chain release factor RF2 [Clostridium difficile NAP08] gi|296427934|gb|EFH13838.1| peptide chain release factor RF2 [Clostridium difficile NAP07] Length = 338 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 16/337 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E +M++ + ++ +E ++ + + ++ + L + + DS R Sbjct: 8 EEKMNKQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLIEIGLEEEDDSVER 67 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ + EK L D + IL I AGTGG +A + L RMY Sbjct: 68 DIEKSIESMEEKLSEM-----KIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMY 122 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R++ + +KV++L + + G K + G + +K E GVHR+ R+ + SG+ Sbjct: 123 IRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSGK 182 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A++ V PE I+V+I D++IDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 183 RHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVV 242 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFS 312 +E+SQH N+ RAM++L A+L +++ + + QI G +IR+Y F Sbjct: 243 QCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQITWG---SQIRSYVFQ 299 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + DHR N ++ V+ G ID IN L ++ Sbjct: 300 PYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNK 336 >gi|227874895|ref|ZP_03993048.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35243] gi|306818191|ref|ZP_07451922.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35239] gi|307701756|ref|ZP_07638770.1| peptide chain release factor 2 [Mobiluncus mulieris FB024-16] gi|227844670|gb|EEJ54826.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35243] gi|304649155|gb|EFM46449.1| peptide chain release factor RF2 [Mobiluncus mulieris ATCC 35239] gi|307613014|gb|EFN92269.1| peptide chain release factor 2 [Mobiluncus mulieris FB024-16] Length = 378 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 11/352 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVIGD 68 L+ + A++ + S D + +S S + K +D L + G+ Sbjct: 29 LQKKIADLTAQASAPDLWDDQENAQKITQTLSATQSDLERLQTMKTRLEDFAALVELGGE 88 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEI---NYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + R Q + E + L ++ L D++ ++ IR+G GG +A Sbjct: 89 ELMSEDGRADGQAIMEDAEATYKTLAADLAALEVRTLLNGEYDERFAVVTIRSGAGGVDA 148 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V+ +S ++ G K I + R+ E+G HR+ Sbjct: 149 ADFAQMLLRMYLRWAERHGYPTKVMDTSYAEEAGIKSATFEIDAPYAYGRLSVEAGTHRL 208 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 RV A+G+ TS A V V+P +D+P DI+ID R+SG GGQ VNTTDSAV Sbjct: 209 ARVSPFNAAGKRQTSFAAVEVIPLIETTDHIDVPESDIKIDVFRSSGPGGQSVNTTDSAV 268 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+++ EKSQ QNR AM+VL++RL + ++ ++ S Sbjct: 269 RLTHLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLLLRHQQEHEKKKELAGDVKAS--WG 326 Query: 304 ERIRTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + Q + D R + V G +D I+ + + + + + Sbjct: 327 DQMRSYFLYGQQLVKDLRTGHESNNPDAVFDGDLDAFIDEGIRWRKHQQLHA 378 >gi|58039738|ref|YP_191702.1| peptide chain release factor 2 [Gluconobacter oxydans 621H] gi|58002152|gb|AAW61046.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Gluconobacter oxydans 621H] Length = 322 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 162/316 (51%), Gaps = 13/316 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E ++ I + + + + +L + +S ++D Q E + Sbjct: 1 MRERTTLANQIEGVQRIESEVEGTLELVELAEMEGDESLVQDAVQTLRAIAEDVRK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D C +E+ AG GG+EA + L RMY R+A +KV + S+ Sbjct: 57 -REIESLLSGEADSNDCYVEVNAGAGGTEAQDWAEMLLRMYTRWAEQHGYKVTFIEGSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 + G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V P I+ Sbjct: 116 EQAGIKSATIQVSGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWVYPVVDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI D+R+DT RASG+GGQHVN TDSA+RITHIPTGI+V +++SQH+NR +AM++L Sbjct: 176 IDINDSDLRVDTFRASGAGGQHVNKTDSAIRITHIPTGIVVACQTDRSQHRNRAKAMEML 235 Query: 274 RARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RAR+Y+ E ++ + K IG G +IR+Y + + + D R + Sbjct: 236 RARMYEAELQKREAAAAQTEASKTDIGWG---HQIRSYVLAPYQLVKDLRTGVEKGNPGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +DD ++ L Sbjct: 293 VLDGALDDFMSASLAQ 308 >gi|148378178|ref|YP_001252719.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC 3502] gi|148287662|emb|CAL81727.1| peptide chain release factor 2 [Clostridium botulinum A str. ATCC 3502] Length = 325 Score = 202 bits (513), Expect = 8e-50, Method: Composition-based stats. Identities = 94/329 (28%), Positives = 173/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + + GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSEVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYLK 322 >gi|42562784|ref|NP_176032.2| peptide chain release factor, putative [Arabidopsis thaliana] gi|332195261|gb|AEE33382.1| Peptide chain release factor 2 [Arabidopsis thaliana] Length = 482 Score = 202 bits (513), Expect = 9e-50, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 17/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R + +++S D K++ E+ +++ + + ++++ E D+ + Sbjct: 136 KKLLVRLKVLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLA 195 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + L +D SC +E++AG GG+E+ Sbjct: 196 KEENDSELESETLKALIDMRRVSKE-----KELEALLSADNDPCSCYIEVQAGAGGTESN 250 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + MY+ +A RK+ V V+ + + G K ++G + K E GVHR+ Sbjct: 251 DWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLV 310 Query: 187 RVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++ R HTS A VAV+P V+I D+RI+ R+ G+GGQH NTTDSAV Sbjct: 311 RISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAV 370 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGD 301 RI HIPTGI +E+SQH N+ AM VL++RL +E R + + + +I G+ Sbjct: 371 RIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGN 430 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IRTY R + D R N + + VL+G +D I L+ Sbjct: 431 ---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSFLS 472 >gi|293394608|ref|ZP_06638902.1| peptide chain release factor RF2 [Serratia odorifera DSM 4582] gi|291422917|gb|EFE96152.1| peptide chain release factor RF2 [Serratia odorifera DSM 4582] Length = 248 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 103/249 (41%), Positives = 145/249 (58%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+I+AG+GG+EA + L RMY R+A + +K EV+ SD D G K Sbjct: 1 MFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEVIEESDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E+GVHR+ R ++ GR HTS ++V V PE E D+DI Sbjct: 61 SATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFVYPEVDEDIDIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ ++ + K IG G +IR+Y RI D R N+ + VL G +D Sbjct: 181 YEMQKKNADKQALEDNKSDIGWG---SQIRSYVLDDSRIKDLRTNVETRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|258616656|ref|ZP_05714426.1| peptide chain release factor 2 in translation [Enterococcus faecium DO] Length = 246 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 97/247 (39%), Positives = 148/247 (59%), Gaps = 8/247 (3%) Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+E+ G GG+E+ + L RMY R+A ++VE L D+ G K + Sbjct: 1 PYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRWAEQHGYQVETLDYQAGDEAGIKSVTL 60 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G F +K E GVHR+ R+ +++ R HTS +V V+PE ID++I +D++I Sbjct: 61 LIKGHNAFGYLKSEKGVHRLVRISPFDSAKRRHTSFCSVDVMPELDETIDIEINPDDLKI 120 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N T+SAVRITH+PTG +V + +++SQ +NR +AM +L+A+LY +E + Sbjct: 121 DTYRASGAGGQHINKTESAVRITHLPTGTVVASQAQRSQLKNREQAMGMLKAKLYQLEVE 180 Query: 284 RMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E +A R Q IG G +IR+Y F + DHR N+ ++ V+ G +D I Sbjct: 181 KKEQEAAALRGEQKEIGWG---SQIRSYVFHPYSMVKDHRTNVETGNVQAVMDGDLDLFI 237 Query: 341 NPLLTAH 347 + L H Sbjct: 238 DGYLKMH 244 >gi|94500761|ref|ZP_01307290.1| peptide chain release factor 2 [Oceanobacter sp. RED65] gi|94427083|gb|EAT12064.1| peptide chain release factor 2 [Oceanobacter sp. RED65] Length = 310 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 105/316 (33%), Positives = 171/316 (54%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E +A+ ++ I D + +L + D++ D E+ ++ ++ +LE Sbjct: 1 MGRERSALEAVVQTIDDMDTGLSDCDELLQM-SVAEDDADSVDEVVSELNELQAKLEKLE 59 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + D+ S L+I+AG+GG+EA + + RMY R+ + +KVE++ +S Sbjct: 60 ----FRRMFSGEADENSAYLDIQAGSGGTEAQDWAEMILRMYLRWGEAKGFKVELMEASA 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D G K G F ++ E+GVHR+ R ++SGR HTS A+V V PE + Sbjct: 116 GDVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSSGRRHTSFASVFVSPEIDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+RID RASG+GGQHVNTT+SAVRITH+PT + +++SQH+N+ +AMK Sbjct: 176 EIDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVTQCQNQRSQHKNKDQAMKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 L+A+L+++E ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LKAKLFELEMQKRNADTQALEESKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQQ 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D + L A Sbjct: 293 VLDGALDPFMEASLKA 308 >gi|224043444|ref|XP_002196330.1| PREDICTED: mitochondrial translational release factor 1 [Taeniopygia guttata] Length = 418 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 208/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + ++ ++S D L A +SPI + + ++E Q+L Sbjct: 47 QKYLESLSKEYQQVSHQLSAHSLNDFEQRTLRRRCADLSPIAAAFQEIKEAEREVQELEA 106 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + + + + ++ +LA E +++K++ L ++ LL+PK+ D S ILE+ AG T Sbjct: 107 MCTELDSRDEKQLLELALEEKESLDKKMNMLCRKLFQLLVPKEKYDRSSVILEVTAGRTT 166 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ YA ++W ++++ + + GG A ISG V+ +K+E Sbjct: 167 GGDICQQFTKEMFDMYQSYADYKRWTFDIVNYTPAEIGGLHHAAAHISGENVYRHLKYEG 226 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G HRVQR+P T S R+ HT +V VLP+ E+DV + +D+RIDT RA G+G QHV Sbjct: 227 GTHRVQRIPETGMSSRMQRIHTGTMSVIVLPQPEEVDVKVDPKDLRIDTFRAKGAGEQHV 286 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVRI H+PTG+ V E+SQ N+ A++ LRA+LY ++ ++ + RKLQ Sbjct: 287 NKTDSAVRIVHLPTGLAVECQQERSQQLNKEIALRTLRAKLYQQLVEKQLSQEQSARKLQ 346 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI+ ++ +L G +D +IN LL + + + Sbjct: 347 LGTRAQSERIRTYNFTQDRVTDHRISYDARNIKEILSGKEALDKLINRLLEFAEIEAVTQ 406 Query: 355 ASE 357 E Sbjct: 407 YLE 409 >gi|153938890|ref|YP_001389537.1| peptide chain release factor 2 [Clostridium botulinum F str. Langeland] gi|152934786|gb|ABS40284.1| peptide chain release factor 2 [Clostridium botulinum F str. Langeland] gi|295317635|gb|ADF98012.1| peptide chain release factor 2 [Clostridium botulinum F str. 230613] Length = 325 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + V+++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFAVKIMDLLEAEDAGIKSVTLKITGEFVYGYLKSEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ +LPE + +++I ED++IDT RA G+GGQHVN T+SAVRITH+PTGI+V Sbjct: 175 SFASIEILPELTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHMPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R ER + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKERIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYLK 322 >gi|296272007|ref|YP_003654638.1| peptide chain release factor 2 [Arcobacter nitrofigilis DSM 7299] gi|296096182|gb|ADG92132.1| peptide chain release factor 2 [Arcobacter nitrofigilis DSM 7299] Length = 364 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 108/343 (31%), Positives = 181/343 (52%), Gaps = 14/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE---QDLHTVI 66 LK+R EIE S + T+ + I+SK+S + + + +L+ + Sbjct: 27 DVLKSRLKEIEELESSQDFWNDVETATKIGIEKNRILSKLSKFKKANESLSGTNELYEMA 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + +E+ L ++ + DD + I+ I G GG+E+ Sbjct: 87 LEEKDEDTFE-----LLHGEAEELDNLIRSTEISVMLSNPDDSSNAIISIHPGAGGTESQ 141 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A +K+EVL D ++ G K++ I G + +K E+G+HR+ Sbjct: 142 DWASMLYRMYLRWAERMDFKIEVLDYQDGEEAGLKDVSFIIKGENAYGYLKAENGIHRLV 201 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ + HTS A+V V PE + + +DIRIDT R+SG+GGQHVN T+SA+R Sbjct: 202 RISPFDSNAKRHTSFASVMVSPEIDDNIDIVVEDKDIRIDTYRSSGAGGQHVNKTESAIR 261 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITHI T I+V +++SQH+N+ AMK+L++RLY+ E ++ + K +IG G Sbjct: 262 ITHIATNIVVQCQNDRSQHKNKASAMKMLKSRLYEYELEKQQAVKDGVEKSEIGWG---H 318 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y +I D R N+ +E +L G I +I +L A Sbjct: 319 QIRSYVMQPYQQIKDTRSNIGYSNVEAILDGDITKMIEDVLIA 361 >gi|212692934|ref|ZP_03301062.1| hypothetical protein BACDOR_02434 [Bacteroides dorei DSM 17855] gi|237708323|ref|ZP_04538804.1| peptide chain release factor RF-2 [Bacteroides sp. 9_1_42FAA] gi|237723533|ref|ZP_04554014.1| peptide chain release factor RF-2 [Bacteroides sp. D4] gi|265757045|ref|ZP_06090907.1| peptide chain release factor RF-2 [Bacteroides sp. 3_1_33FAA] gi|212664519|gb|EEB25091.1| hypothetical protein BACDOR_02434 [Bacteroides dorei DSM 17855] gi|229438084|gb|EEO48161.1| peptide chain release factor RF-2 [Bacteroides dorei 5_1_36/D4] gi|229457544|gb|EEO63265.1| peptide chain release factor RF-2 [Bacteroides sp. 9_1_42FAA] gi|263233544|gb|EEZ19173.1| peptide chain release factor RF-2 [Bacteroides sp. 3_1_33FAA] Length = 371 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 156/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR------FAEIELRM----------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + +IE ++ D K + + + Sbjct: 1 MITIEQLKDVKERTAALERYLDIENKLVQVEEEQLRTQAPGFWDDAKKAEAQMRKVKDLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + K +L D + + LE + Sbjct: 61 KWIDGYREVKTMADELELAFDFCKDDLVTEEEVDAAYQKAVTAVEALELKNMLRQEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I G GG+E+ + L RMY R+A +KV V + D D+ G K + Sbjct: 121 D----CVLKINCGAGGTESQDWASMLMRMYMRWAETNGYKVSVANLQDGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V I + D Sbjct: 177 IEGSFSYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVTIEPARMSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|325684476|gb|EGD26640.1| peptide chain release factor RF2 [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 332 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 105/331 (31%), Positives = 171/331 (51%), Gaps = 6/331 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D K + + + + K + +++ D T + +++ E Sbjct: 1 MAEPGFWDNQEKAQKLISETNLLKEKRDSFLALEKDLTDEETALELLRLEADADLQKDTE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + ++ LL DD + ++EI G GG+EA + L RMY+RY Sbjct: 61 DQLAKLQEEF--HQYELNLLLSGEYDDHNALMEIHPGAGGTEAMDWGNMLLRMYQRYCDS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R K EV + D+ G K + ISG+ + +K E GVHR+ R+ +++ R HTS A Sbjct: 119 RGLKFEVNNFEPGDEAGLKSVSVRISGKNTYGLLKSEHGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE I++DI +D+RID R+SG+GGQH+N T SAVRITHIPTGI+ + +++ Sbjct: 179 SVEVIPEVDDSIEIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHIPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +RA+L+ +E ++ E++A + Q+ +IR+Y F + DH Sbjct: 239 SQFQNRDTAMNEMRAKLFHLEEEKKRKEKAALKGEQL-DIAWGSQIRSYVFHPYSMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R + V+ G +D I L ++ Sbjct: 298 RTGYETADVGGVMDGKLDPFIYAYLQWRLSQ 328 >gi|237752014|ref|ZP_04582494.1| peptide chain release factor 2 [Helicobacter winghamensis ATCC BAA-430] gi|229376581|gb|EEO26672.1| peptide chain release factor 2 [Helicobacter winghamensis ATCC BAA-430] Length = 367 Score = 201 bits (512), Expect = 9e-50, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 178/347 (51%), Gaps = 10/347 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 LKNR EI + K E ++ Y+ K D + + Sbjct: 28 SLKNRILEITELEQTKDFWEDAKKAGELQKEKKRCERQLEKYNNAKSALDDAIELFELSS 87 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D E ++ E +E+ + ++ D D + I I G GG+E+ + Sbjct: 88 DDLESLEVLFAE----SEELESIIKNAEIEVMLSDPLDSNNAIFTITPGAGGTESQDWAS 143 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY R+A + +KVE+L + D+ G K+ I G + K E+GVHR+ R+ Sbjct: 144 MLYRMYLRWAERKDFKVELLDYQEGDEAGIKDASFIIKGENAYGYAKAENGVHRLVRISP 203 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +A+ + HTS ++V V PE + +++I +D+ IDT RASG+GGQHVN T+SAVRITH Sbjct: 204 FDANAKRHTSFSSVQVSPEIDDEINIEIDEKDLEIDTYRASGAGGQHVNKTESAVRITHK 263 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 P+GI+V +++SQH+N+ A+K+L+++LY++ER + E + K G G +IR+ Sbjct: 264 PSGIVVQCQNDRSQHKNKASALKMLKSKLYELERLKREAESNHTDKGDNGWG---HQIRS 320 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Y + ++ D R NL ++ +L G ID I+ +L + S Sbjct: 321 YVLTPYQQVKDLRSNLAYTNVDAILDGDIDTILEGVLIHINTQKAES 367 >gi|313672869|ref|YP_004050980.1| bacterial peptide chain release factor 2 (brf-2) [Calditerrivibrio nitroreducens DSM 19672] gi|312939625|gb|ADR18817.1| bacterial peptide chain release factor 2 (bRF-2) [Calditerrivibrio nitroreducens DSM 19672] Length = 371 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 177/342 (51%), Gaps = 17/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 LK + + IE + + L +E ++I + ++ ++ L + Sbjct: 27 EHLKEKLSNIEKQTHDPDFWSSKESKHLLKEQSSIKKFLDDWYYLVRRFEDMDVLLELQE 86 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + E++++ N+ L+ +D + IL I +G GG+EA Sbjct: 87 EGENVAAEIEENF-------TELKQIVNDFELKLILNGENDINNAILTIHSGAGGTEAND 139 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A RK+K E+L D+ G K I G + +K E+GVHR+ R Sbjct: 140 WANMLLRMYIRWAENRKFKYEMLDYQAGDEAGIKSATLNIIGPYAYGYLKGETGVHRLVR 199 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ + HTS A+V VLPE + I D++IDT RA G+GGQHVNTTDSAVRI Sbjct: 200 LSPFDANNKRHTSFASVFVLPEIEDDVDIVINESDLKIDTFRAGGAGGQHVNTTDSAVRI 259 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 TH+PTGI+V +E+SQH+N+ A+K+L+++LY++E ++ E++ K +I + Sbjct: 260 THLPTGIVVSCQNERSQHKNKAHALKILKSKLYELEMEKKNKEKNELESSKTEI---NFG 316 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y + D R + VL G +DD I L Sbjct: 317 SQIRSYVLHPYKMVKDLRTRHETGNPDAVLDGELDDFIRSYL 358 >gi|325280722|ref|YP_004253264.1| Peptide chain release factor 2 [Odoribacter splanchnicus DSM 20712] gi|324312531|gb|ADY33084.1| Peptide chain release factor 2 [Odoribacter splanchnicus DSM 20712] Length = 370 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ ++ R E+E+R + + + + + Sbjct: 1 MITTDQLKAVEERSGALRRYLDIDRKKIELEEVEMRTQAPDFWNDAKQAEKVMKQVRELK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I + + DL+ + + + + ELE + + Sbjct: 61 GWIEGCEAVSRSVDDLNVLFDFAKEGEATEEEVDTHYAETLQLVEELEL----KNMLRGE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D SCIL+I +G GG+E+ + L RMY R+A +K+ V + + D+ G K + Sbjct: 117 ADQMSCILKINSGAGGTESQDWASMLMRMYMRWAEANNYKLTVSNIQEGDEAGIKTVTLQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRID 225 + G + +K E+GVHR+ RV A G+ TS A+V V P + I DI D Sbjct: 177 LEGDFAYGYLKGENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDSIEIAINAADISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN ++ VR+ + ++ + +SQ NR AM++LR+ Sbjct: 237 TFRSGGAGGQNVNKVETGVRLRYNYKDPDTGETREILIENTETRSQLDNRENAMRLLRSM 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD+E +R E+ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDMELQRRMAEQQKIESNKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVGGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|226947396|ref|YP_002802487.1| peptide chain release factor 2 [Clostridium botulinum A2 str. Kyoto] gi|226842678|gb|ACO85344.1| peptide chain release factor 2 [Clostridium botulinum A2 str. Kyoto] Length = 325 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 94/329 (28%), Positives = 174/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + ++K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLTKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ +LPE + +++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 175 SFASIEILPELTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYLK 322 >gi|15965084|ref|NP_385437.1| peptide chain release factor 2 [Sinorhizobium meliloti 1021] gi|307315054|ref|ZP_07594639.1| peptide chain release factor 2 [Sinorhizobium meliloti BL225C] gi|307317885|ref|ZP_07597323.1| peptide chain release factor 2 [Sinorhizobium meliloti AK83] gi|15074263|emb|CAC45910.1| Probable peptide chain release factor 2 (RF-2) protein [Sinorhizobium meliloti 1021] gi|306896647|gb|EFN27395.1| peptide chain release factor 2 [Sinorhizobium meliloti AK83] gi|306898893|gb|EFN29543.1| peptide chain release factor 2 [Sinorhizobium meliloti BL225C] Length = 342 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 163/333 (48%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + + + + + + I+ + +Q+ D +I + + +A Sbjct: 2 NNKAEDPSLWNDAAEAQKLMRERQQLDDGINGLRRFEQQLNDNIELIELGEEEGDSAIVA 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E + + + D LE+ +G GG+E+ + L RMY R+ Sbjct: 62 EAEEALRQLRGEA--AKKQVEAMLSGEADQNDTYLEVHSGAGGTESQDWANMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +KVE++ D ++ G K + G + +K ESGVHR+ R+ +++ R HT Sbjct: 120 AERQGYKVELMEIQDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNARRHT 179 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +++ V P E +DI D RIDT R+SG+GGQHVNTTDSAVRITH+P+GI+V Sbjct: 180 SFSSIWVYPVVDESIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHMPSGIVVQCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR 315 E+SQH+NR +A +LRARLY+ E K+ A A K IG G +IR+Y + Sbjct: 240 QERSQHKNRAKAWDMLRARLYEAELKKREEAANAEAASKTDIGWG---HQIRSYVLQPYQ 296 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R + VL G +++ + L Sbjct: 297 LVKDLRTGVESSSPGDVLDGELNEFMEAALAHR 329 >gi|255091190|ref|ZP_05320668.1| peptide chain release factor 2 [Clostridium difficile CIP 107932] gi|255099304|ref|ZP_05328281.1| peptide chain release factor 2 [Clostridium difficile QCD-63q42] gi|255305089|ref|ZP_05349261.1| peptide chain release factor 2 [Clostridium difficile ATCC 43255] gi|255312847|ref|ZP_05354430.1| peptide chain release factor 2 [Clostridium difficile QCD-76w55] gi|255515606|ref|ZP_05383282.1| peptide chain release factor 2 [Clostridium difficile QCD-97b34] gi|255648700|ref|ZP_05395602.1| peptide chain release factor 2 [Clostridium difficile QCD-37x79] gi|306518820|ref|ZP_07405167.1| peptide chain release factor 2 [Clostridium difficile QCD-32g58] Length = 339 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 175/337 (51%), Gaps = 16/337 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E +M++ + ++ +E ++ + + ++ + L + + + DS R Sbjct: 9 EEKMNQQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLIEIGLEEDDDSVER 68 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ + EK L D + IL I AGTGG +A + L RMY Sbjct: 69 DIEKSIESMEEKLSEM-----KIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMY 123 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R++ + +KV++L + + G K + G + +K E GVHR+ R+ + SG+ Sbjct: 124 IRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSGK 183 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A++ V PE I+V+I D++IDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 184 RHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVV 243 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFS 312 +E+SQH N+ RAM++L A+L +++ + + QI G +IR+Y F Sbjct: 244 QCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQITWG---SQIRSYVFQ 300 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + DHR N ++ V+ G ID IN L ++ Sbjct: 301 PYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNK 337 >gi|91081965|ref|XP_967739.1| PREDICTED: similar to AGAP012082-PA, partial [Tribolium castaneum] Length = 383 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 191/351 (54%), Gaps = 13/351 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I L++ + + + Y + + + P+I+ ++ + Q+L ++ + Sbjct: 42 IKRLEHEYEGLLKL-------NNYTANSRFH-QLQPLINALNERKDAVENIQNLSELLNE 93 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + + E + +L D+ S +LE+ AG GG EA LF Sbjct: 94 KDDDIRKLAEEEKLTFESRIKSID-EKLLEAILPSDKEDECNSIVLEVNAGVGGQEAMLF 152 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +LF MY +A + W+ ++ S D GG + A I+G VF K E+GVHRVQR+ Sbjct: 153 ANELFEMYCNFAEHQGWETQIADYSPVDIGGIRHASALINGPQVFQFFKHEAGVHRVQRI 212 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE +GR+HTS +V LP+ EI+V+I +D++I+T RASG+GGQHVNTT+SAVR+TH Sbjct: 213 PTTEKAGRIHTSTVSVVALPQPTEIEVNIDNKDLKIETKRASGAGGQHVNTTESAVRVTH 272 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG V ++SQ +NR A+ LRA +Y + + RK Q+ S R+E+IR Sbjct: 273 LPTGFSVECQVDRSQVKNRQIALAKLRALIYQRDLEEQIARNENMRKNQVRSNFRNEKIR 332 Query: 308 TYNFSQGRITDHRI-NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSA 355 TYNF Q RITDHR+ ++ L+ LQG + +I L ++ + + + Sbjct: 333 TYNFPQDRITDHRLQGCNVHNLKGFLQGNDALGSLIKKLDQQYKIETLLNL 383 >gi|270007320|gb|EFA03768.1| hypothetical protein TcasGA2_TC013879 [Tribolium castaneum] Length = 387 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 120/351 (34%), Positives = 191/351 (54%), Gaps = 13/351 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I L++ + + + Y + + + P+I+ ++ + Q+L ++ + Sbjct: 42 IKRLEHEYEGLLKL-------NNYTANSRFH-QLQPLINALNERKDAVENIQNLSELLNE 93 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + + E + +L D+ S +LE+ AG GG EA LF Sbjct: 94 KDDDIRKLAEEEKLTFESRIKSID-EKLLEAILPSDKEDECNSIVLEVNAGVGGQEAMLF 152 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +LF MY +A + W+ ++ S D GG + A I+G VF K E+GVHRVQR+ Sbjct: 153 ANELFEMYCNFAEHQGWETQIADYSPVDIGGIRHASALINGPQVFQFFKHEAGVHRVQRI 212 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE +GR+HTS +V LP+ EI+V+I +D++I+T RASG+GGQHVNTT+SAVR+TH Sbjct: 213 PTTEKAGRIHTSTVSVVALPQPTEIEVNIDNKDLKIETKRASGAGGQHVNTTESAVRVTH 272 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG V ++SQ +NR A+ LRA +Y + + RK Q+ S R+E+IR Sbjct: 273 LPTGFSVECQVDRSQVKNRQIALAKLRALIYQRDLEEQIARNENMRKNQVRSNFRNEKIR 332 Query: 308 TYNFSQGRITDHRI-NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSA 355 TYNF Q RITDHR+ ++ L+ LQG + +I L ++ + + + Sbjct: 333 TYNFPQDRITDHRLQGCNVHNLKGFLQGNDALGSLIKKLDQQYKIETLLNL 383 >gi|291295687|ref|YP_003507085.1| LigA [Meiothermus ruber DSM 1279] gi|290470646|gb|ADD28065.1| LigA [Meiothermus ruber DSM 1279] Length = 365 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 98/357 (27%), Positives = 169/357 (47%), Gaps = 17/357 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I + R E++ ++++ + K+++E A + + + Q +L Sbjct: 18 DIAGKEARLKELDRQINDPSLWNDPAHARKISQEAARLRKAVEGYRRLESDLQGLLELWP 77 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + +L + E + L + + I+ I+ G GG+E Sbjct: 78 ELSPEEREQMQPELERAGRELEELYHQTL---------LGFPYAENAAIVTIKPGAGGTE 128 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY R+A + + +E++ + G + + G + + E+GVHR Sbjct: 129 ACDWAQMLYRMYTRFAERKGFSLELVDLEPGAEAGIDQAQFIVRGENAYGLLSAEAGVHR 188 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R A G+ TS A V V+PE E D+ I ED+RID MR+ G GGQ VNTTDSA Sbjct: 189 LVRPSPFNAQGKRQTSFAAVEVMPEVDESVDIQIAPEDLRIDVMRSQGKGGQGVNTTDSA 248 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VR+ H+PTGI V +SQ +N+ A+ +LR++L+++E K+ E + K + + Sbjct: 249 VRVVHLPTGIFVKCQVTRSQQKNKEMALNILRSKLFEIEWKKKQEELARL-KGESRPIEW 307 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH--QAKMIGSASE 357 +IR+Y + I DHR + E VL G ++ +I L + + + SA E Sbjct: 308 GSQIRSYVLDKQYIKDHRTGEMRHDPENVLDGDLESLIWAGLEWKAGRREAVASADE 364 >gi|329667680|gb|AEB93628.1| peptide chain release factor 2 (RF-2) [Lactobacillus johnsonii DPC 6026] Length = 332 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 167/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + K + Q + + D T + +D + ++ Sbjct: 1 MAEPGFWDNQEQAQSLINDTNRMKEKSENFKQLEAKFDDAQTALELLKADPDPELSEELS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ LL D D + ++EI G GG+EA + L RMY+RYAA Sbjct: 61 EEMVSLSQSF--HDYELSLLLSDKYDQHNALMEIHPGAGGTEAMDWADMLLRMYQRYAAS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 K E+ ++ G K + I G+ F +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 HDLKFEIEDYEPGEEAGVKSVSIRIQGKNAFGLLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + +VDI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDQSIEVDINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +LRA+L+ +E ++ + + Q G +IR+Y F + DH Sbjct: 239 SQLQNRETAMNMLRAKLFQLEEEKKRKQTEELKGNQKEIG-FGSQIRSYVFHPYNMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R N + V+ G +D+ I L Sbjct: 298 RTNFESSDVNGVMDGKLDNFIYAYLQW 324 >gi|241204131|ref|YP_002975227.1| peptide chain release factor 2 [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240858021|gb|ACS55688.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 376 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 169/346 (48%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + KL E + I+ + +Q+ + +L + Sbjct: 26 DQAIRRLDWLNNKAEDPNLWNDASEAQKLMRERQQLDDGINGVKQLEQQLNDNIELIELG 85 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + S +++ + R + D LE+ +G GG+E+ Sbjct: 86 EEEGDQSVVKEAEDTLKALKAEAAR-----RQVEAMLSGEADGNDTYLEVHSGAGGTESQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +++KVE+L D ++ G K + G + +K ESGVHR+ Sbjct: 141 DWANMLLRMYTRWAERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS +++ V P I ++I D RIDT R+SG+GGQHVNTTDSAVR Sbjct: 201 RISPYDSNARRHTSFSSIWVYPVVDDSIQIEINESDCRIDTYRSSGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITHIPTGI+V E+SQH+NR +A +LRAR+Y+ E K+ A A K +IG G Sbjct: 261 ITHIPTGIVVQCQQERSQHKNRAKAWDMLRARMYEAELKKREDAASAEAASKTEIGWG-- 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ + L Sbjct: 319 -HQIRSYVLQPYQMVKDLRTGVASSAPDDVLDGDLNEFMEAALAHR 363 >gi|15827278|ref|NP_301541.1| peptide chain release factor 2 [Mycobacterium leprae TN] gi|221229756|ref|YP_002503172.1| peptide chain release factor 2 [Mycobacterium leprae Br4923] gi|6093957|sp|O32885|RF2_MYCLE RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|254790917|sp|B8ZUV0|RF2_MYCLB RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|2326693|emb|CAB11005.1| peptide chain release factor 2 [Mycobacterium leprae] gi|13092827|emb|CAC30176.1| putative peptide chain release factor 2 [Mycobacterium leprae] gi|219932863|emb|CAR70761.1| putative peptide chain release factor 2 [Mycobacterium leprae Br4923] Length = 374 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 100/350 (28%), Positives = 162/350 (46%), Gaps = 9/350 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E S+ D ++ + +S ++ ++ ++ DL + Sbjct: 24 DVEGLRTRIEKLEHEASDPKLWDDQVRAQRVTSELSHAQGELRRIEELRRRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI----RELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + +E A R L D++ ++ IR+G GG Sbjct: 84 LAAEERAAAAASGMEAFAEADAELKALRVDIEATEVRTLLSGEYDEREALITIRSGAGGV 143 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +AA + L RMY R+A K+ VEVL +S ++ G K + + + E G H Sbjct: 144 DAADWAEMLMRMYIRWAEQHKYGVEVLDTSYAEEAGVKSATFAVHAPFAYGTLASEQGTH 203 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDS Sbjct: 204 RLVRISPFDNQSRRQTSFAEVEVLPVVEITDHIDIPEGDVRVDVYRSSGPGGQSVNTTDS 263 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTG++V +EKSQ QN++ AM+VL+A+L + +R E A + G Sbjct: 264 AVRLTHVPTGLVVTCQNEKSQLQNKVSAMRVLQAKLLERKRLEERAELDALKGR--GGSS 321 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y + + D R + VL G ID + + + Sbjct: 322 WGNQIRSYVLHPYQMVKDLRNEYEVGNPTAVLDGDIDGFLEAGIRWRNRR 371 >gi|255654235|ref|ZP_05399644.1| peptide chain release factor 2 [Clostridium difficile QCD-23m63] Length = 339 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 109/337 (32%), Positives = 174/337 (51%), Gaps = 16/337 (4%) Query: 20 ELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E +M++ + ++ +E ++ + + ++ + L + + DS R Sbjct: 9 EEKMNKQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLIEIGLEEEDDSVER 68 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ + EK L D + IL I AGTGG +A + L RMY Sbjct: 69 DIEKSIESMEEKLSEM-----KIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMY 123 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R++ + +KV++L + + G K + G + +K E GVHR+ R+ + SG+ Sbjct: 124 IRWSESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSGK 183 Query: 197 VHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A++ V PE I+V+I D++IDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 184 RHTSFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVV 243 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFS 312 +E+SQH N+ RAM++L A+L +++ + + QI G +IR+Y F Sbjct: 244 QCQNERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQITWG---SQIRSYVFQ 300 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + + DHR N ++ V+ G ID IN L ++ Sbjct: 301 PYKLVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNK 337 >gi|150015324|ref|YP_001307578.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB 8052] gi|149901789|gb|ABR32622.1| peptide chain release factor 2 [Clostridium beijerinckii NCIMB 8052] Length = 324 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 106/328 (32%), Positives = 169/328 (51%), Gaps = 7/328 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ES D K E I KI +D+ K + +D+ + D E I+ Sbjct: 1 MQESGFWDNIKKAEEVTKKSKSIKDKIESFDKLKSQIEDIEVLKEIMEDDDEESANEIIQ 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 L + ++ N +L D + IL + G GG++A + L RMY R+ Sbjct: 61 TLRDIQAQ---IDDYNMKVLLCGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRWCEK 117 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + +E L D+ G K + ++G + +K E G+HR+ R+ A+G+ TS A Sbjct: 118 QGYSIETLDLLPGDEAGIKSVTLKVTGEYAYGYLKAEKGIHRLVRISPYNANGKRQTSFA 177 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 ++ VLPE E D++I +D++IDT R+ G+GGQHVN TDSAVRITHIPTG++V +E+ Sbjct: 178 SMEVLPELTKEQDIEIRSDDLKIDTYRSGGAGGQHVNKTDSAVRITHIPTGVVVQCQNER 237 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ NR AM++L+++L +++ +R E+ + ++ +IR+Y F + DH Sbjct: 238 SQFSNRDTAMEMLKSKLVELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYSMVKDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N+ + V+ G ID IN L Sbjct: 297 RTNVETSNVTSVMDGEIDMFINAYLKQQ 324 >gi|269976501|ref|ZP_06183486.1| peptide chain release factor 2 [Mobiluncus mulieris 28-1] gi|269935302|gb|EEZ91851.1| peptide chain release factor 2 [Mobiluncus mulieris 28-1] Length = 378 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 100/352 (28%), Positives = 167/352 (47%), Gaps = 11/352 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVIGD 68 L+ + A++ + S D + +S S + K +D L + G+ Sbjct: 29 LQKKIADLTAQASAPDLWDDQENAQKITQTLSATQSDLERLQTMKTRLEDFAALVELGGE 88 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEI---NYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + R Q + E + L ++ L D++ ++ IR+G GG +A Sbjct: 89 ELMSEDGRADGQAIMEDAEATYKTLAADLAALEVRTLLNGEYDERFAVVTIRSGAGGVDA 148 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A + +V+ +S ++ G K I + R+ E+G HR+ Sbjct: 149 ADFAQMLLRMYLRWAERHGYPTKVMDTSYAEEAGIKSATFEIDAPYAYGRLSVEAGTHRL 208 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 RV A+G+ TS A V V+P +D+P DI+ID R+SG GGQ VNTTDSAV Sbjct: 209 ARVSPFNAAGKRQTSFAAVEVIPLIETTDHIDVPESDIKIDVFRSSGPGGQSVNTTDSAV 268 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTGI+++ EKSQ QNR AM+VL++RL + ++ ++ S Sbjct: 269 RLTHLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLLLRHQQEHEKKKELAGDVKAS--WG 326 Query: 304 ERIRTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +++R+Y + Q + D R + V G +D I+ + + + + + Sbjct: 327 DQMRSYFLYGQQLVKDLRTGHESNNPDAVFDGDLDTFIDEGIRWRKHQQLHA 378 >gi|327403921|ref|YP_004344759.1| peptide chain release factor 2 (bRF-2) [Fluviicola taffensis DSM 16823] gi|327319429|gb|AEA43921.1| bacterial peptide chain release factor 2 (bRF-2) [Fluviicola taffensis DSM 16823] Length = 360 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 99/365 (27%), Positives = 167/365 (45%), Gaps = 27/365 (7%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ ++ R I EL+ + D K E I + Sbjct: 1 MVNSDQLKEINQRIDAIASYLKIPEKEMQLRESELKTQDPNFWDDPKKAEAEMKDIRGLK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + K + DL +I + ++ I E+E + Sbjct: 61 FWIESYTRLKSQSDDLEVLIEFVKEGAAEESECDEAYQSMLTTIEEVEL----KNMLSGE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D S +++I AG GG+EA + G L RMY +A +KV+ L+ + D G K + Sbjct: 117 EDALSAVIQITAGAGGTEACDWAGMLMRMYIMWAEKSGYKVKELNFQEGDVAGIKTVTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRID 225 I G F +K E+G+HR+ RV + G+ TS A+V V P + DI + Sbjct: 177 IEGEFAFGYLKGENGIHRLVRVSPYNSQGKRMTSFASVYVYPSVDDTIEIYVNPADITFE 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ G+GGQ+VN ++AVR+ H +GI++ S +SQ N+ +AM++LR++LY++E ++ Sbjct: 237 TFRSGGAGGQNVNKVETAVRLRHAASGIIIENSESRSQLANKEKAMQLLRSQLYEIELRK 296 Query: 285 MANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 A R K +I G +IR+Y R+ DHR + ++ + VL G + + Sbjct: 297 RAESRDQIEAGKKKIEWG---SQIRSYVLDDRRVKDHRTDYSVNDPDKVLDGDLLPFLKS 353 Query: 343 LLTAH 347 L + Sbjct: 354 FLMMY 358 >gi|156932658|ref|YP_001436574.1| hypothetical protein ESA_00441 [Cronobacter sakazakii ATCC BAA-894] gi|156530912|gb|ABU75738.1| hypothetical protein ESA_00441 [Cronobacter sakazakii ATCC BAA-894] Length = 293 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 160/297 (53%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A ++ ++ + + D C Sbjct: 3 QGLDDVAGLLELAVEADDEETFNEAV-----AELDQLEAKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K ISG F Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEIIEESEGEVAGLKSATIKISGDYAF 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVEDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 LEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 291 >gi|166363701|ref|YP_001655974.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843] gi|166086074|dbj|BAG00782.1| peptide chain release factor 2 [Microcystis aeruginosa NIES-843] Length = 330 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 91/324 (28%), Positives = 152/324 (46%), Gaps = 7/324 (2%) Query: 26 SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 D + ++ S + Y + +D +I +S+ L + Sbjct: 5 PTFWDNLDTAQKTLQELNECKSSLETYQGWCGQLEDTKAIIELLELESDRTLLEEATDNL 64 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKW 145 + + L D K +L I AG GG++A + L RMY R+A + + Sbjct: 65 THLQHDL--DRWELQQLLNGPYDAKGAVLTINAGAGGTDAQDWTEMLLRMYSRWAEKQGY 122 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + S+ D+ G K + I+G + +K E G HR+ R+ A+G+ TS A V Sbjct: 123 KVTLAEISEGDEAGIKSVTIEIAGTYAYGYLKGEKGTHRLVRISPFNANGKRQTSFAGVE 182 Query: 206 VLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V+P + V+IP +D+ I T R+ G GGQ+VN ++AVR+ H+PTGI V + E+SQ Sbjct: 183 VMPILGDDAVRVEIPDKDLEITTTRSGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQ 242 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRI 321 QN+ +A+ +L+A+L + R++ A + R + +IR Y F + + D R Sbjct: 243 LQNKEKALALLKAKLLIIAREQQAQAIAEIRGDMVE-AAWGNQIRNYVFHPYQLVKDLRS 301 Query: 322 NLTLYKLEYVLQGYIDDIINPLLT 345 N+ + V+ G +D I L Sbjct: 302 NVETTDVTRVMNGDLDSFIEAYLR 325 >gi|225165725|ref|ZP_03727521.1| peptide chain release factor 2 [Opitutaceae bacterium TAV2] gi|224800034|gb|EEG18467.1| peptide chain release factor 2 [Opitutaceae bacterium TAV2] Length = 341 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 106/332 (31%), Positives = 162/332 (48%), Gaps = 13/332 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M S D + + + + + + +K + L+ +I + S +E + Sbjct: 1 MGASDFWDNNERAQKHINKVNGLKRAVLPLVAFRKKVDDLDALNELI-EAGSPAEQEEFG 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I EL +++ D + I I+AG GG+E+ + LFRMY R+ Sbjct: 60 AELTAQAAAMIGEL-DDLEINAFLTGQFDRNNAIFSIQAGAGGTESNDWADMLFRMYTRW 118 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R + VEV D G + I G + K E GVHR+ R+ +++ R HT Sbjct: 119 AERRGFTVEVQDVQPGDQAGISKATLLIKGENAYGYCKAERGVHRLVRISPFDSNQRRHT 178 Query: 200 SAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTS 257 S V V+ EI ++IP ++IR+D R+SG GGQ VNTTDSAVR+THIPTG ++V Sbjct: 179 SFCAVDVIAEINDEIKIEIPEDEIRVDVYRSSGKGGQGVNTTDSAVRLTHIPTGLVVVCQ 238 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQ +N+ AM +L+ARLY+ ++ E K +IG G +IR+Y + Sbjct: 239 NERSQIKNKASAMSILKARLYEKKQDEQRAEMDKFYGEKGEIGWGA---QIRSYVLQPYQ 295 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R + + VL G ID IN L A Sbjct: 296 MVKDLRTGVNTSDTQGVLDGDIDRFINGWLRA 327 >gi|226226984|ref|YP_002761090.1| peptide chain release factor 2 [Gemmatimonas aurantiaca T-27] gi|226090175|dbj|BAH38620.1| peptide chain release factor 2 [Gemmatimonas aurantiaca T-27] Length = 335 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 107/333 (32%), Positives = 168/333 (50%), Gaps = 16/333 (4%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + ++ ++ + + + ++L ++ DL Sbjct: 1 MADPAFWNDQEHAREIVQQVKVLKGWVEPSDSLQSRIDSARELDELLSLEPDKGMNADLD 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + L + DD + LEI AG GG+EA + L R+Y R+ Sbjct: 61 QEVQRILADLDA-----FELKSLLRGNDDYRDAQLEISAGAGGTEAQDWASMLLRLYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + + +EVL SD ++ G K V I G+ + ++ ESGVHR+ R+ ++ R HT Sbjct: 116 AERKGFDLEVLDLSDGEEAGIKGAVLEIKGQYAYGFLRPESGVHRLVRISPFDSQARRHT 175 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V P EI+++I ED+RID RASG+GGQHVN T SAVRITHIP+GI+ + Sbjct: 176 SFASVFVYPVVNEEINIEIREEDLRIDVYRASGAGGQHVNKTSSAVRITHIPSGIVCASQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG- 314 E+SQ +N+ AMK L+ RLY +E ++ A ++A K + G +IR+Y F Sbjct: 236 QERSQFKNKATAMKQLKNRLYQLEIEKQAAVKAAFDANKQDVTFG---SQIRSYVFQPYT 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR L + ++ V+ G ID I+ L Sbjct: 293 MVNDHRSELKIADVQKVMDGDIDPFIHAYLKQE 325 >gi|42518772|ref|NP_964702.1| peptide chain release factor 2 [Lactobacillus johnsonii NCC 533] gi|41583058|gb|AAS08668.1| peptide chain release factor 2 (RF-2) [Lactobacillus johnsonii NCC 533] Length = 332 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 166/327 (50%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + K + Q + + D T + +D + ++ Sbjct: 1 MAEPGFWDNQEQAQSLINDTNRMKEKSENFKQLEAKFDDAQTALELLKADPDPELSEELS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ LL D D + ++EI G GG+EA + L RMY+RYA Sbjct: 61 EEMVSLSQSF--HDYELSLLLSDKYDQHNALMEIHPGAGGTEAMDWADMLLRMYQRYAVS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 K E+ ++ G K + I G+ F +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 HDLKFEIEDYEPGEEAGVKSVSIRIQGKNAFGLLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + +VDI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDQSIEVDINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIITSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +LRA+L+ +E ++ + + Q G +IR+Y F + DH Sbjct: 239 SQLQNRETAMNMLRAKLFQLEEEKKRKQTEELKGNQKEIG-FGSQIRSYVFHPYNMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R N + V+ G +D+ I L Sbjct: 298 RTNFETSDVNGVMDGKLDNFIYAYLQW 324 >gi|326491925|dbj|BAJ98187.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 465 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 161/343 (46%), Gaps = 17/343 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L R ++ + + + + + K++ E + I ++ ++Q+ E D+ + D Sbjct: 121 LLERSKQLAVVLEKPDLWEDPVFAGKVSREQGELMGKIKSVNQFEQQLMEHIDMLRLARD 180 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + L +D C +E++AG GG E+ + Sbjct: 181 EGDNELETESMRALADMRREAKE-----KELNALLSGDNDPYPCFIEVQAGAGGVESMDW 235 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MY+ +A R ++V V+ + G K + G F K E GVHR+ R+ Sbjct: 236 AAMVMNMYKSWAQRRGYRVTVIEEMPGELAGIKRATIKVDGEYAFGYAKSEIGVHRLVRI 295 Query: 189 PATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++ R HTS A VAV+P + I D+RI+ R+ G GGQH NTT+SAVRI Sbjct: 296 SPFDSGKRRHTSFAAVAVIPILGESSSRYQINESDLRIERFRSGGPGGQHANTTESAVRI 355 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 HIPTG +E+SQH NR AM VL++RL +E R A + + + +I G+ Sbjct: 356 VHIPTGTTATCQNERSQHMNRASAMAVLQSRLDQLEITRQAQMNAEHTQSLSEISWGN-- 413 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R + D R N + + VL+G +DD I L+ Sbjct: 414 -QIRSYVLQPYRMVKDLRTNYEVSDPDSVLEGDLDDFILSFLS 455 >gi|27363990|ref|NP_759518.1| peptide chain release factor 2 [Vibrio vulnificus CMCP6] gi|37678852|ref|NP_933461.1| protein chain release factor B [Vibrio vulnificus YJ016] gi|320157369|ref|YP_004189748.1| peptide chain release factor 2 [Vibrio vulnificus MO6-24/O] gi|27360107|gb|AAO09045.1| peptide chain release factor 2 [Vibrio vulnificus CMCP6] gi|37197593|dbj|BAC93432.1| protein chain release factor B [Vibrio vulnificus YJ016] gi|319932681|gb|ADV87545.1| peptide chain release factor 2 [Vibrio vulnificus MO6-24/O] Length = 289 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 101/293 (34%), Positives = 158/293 (53%), Gaps = 12/293 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + + L + + ++ + + E + + + D C +++ Sbjct: 2 DDVEGLLELAIEAEDQETFDEIGPE-----LEALEEKLAGLEFRRMFSGAHDSSDCYIDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + + RMY R+A + +K EV+ S+ D G K + I G + + Sbjct: 57 QAGSGGTEAQDWTSMMLRMYLRWAEAKGFKTEVIEVSEGDVAGLKSVTVRIIGDYAYGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS A+ V PE E D+DI D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFASAFVYPEIDENIDIDINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR- 293 HVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN Sbjct: 177 HVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANED 236 Query: 294 -KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLK 286 >gi|114565810|ref|YP_752964.1| peptide chain release factor 2 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336745|gb|ABI67593.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 334 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 113/333 (33%), Positives = 183/333 (54%), Gaps = 12/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKK---QEEQDLHTVIGDHNSDSEIR 76 + + + + E IS + +++Y + Q D+ + + N ++ + Sbjct: 2 QKKTLQENFWSERKEAQEILKQISKLQENLNLYKELMGTAQYLNDILEMAEEENDETLWQ 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + + ++ L+L D + I+ + AG GG+EA +V LFRMY Sbjct: 62 ESVRELLALQKRFRE-----FELLVLFSGPHDYSNAIVSLHAGAGGTEAQDWVEILFRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + +EVL D D+ G K + + G F ++K E GVHR+ R+ ++SGR Sbjct: 117 SRWAENSSYSIEVLDFLDGDEAGIKSVTFLVRGPYAFGKLKCEEGVHRLIRISPFDSSGR 176 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A+++VLPE E +V I +ED+R+DT R+SG+GGQH+N TDSAVRITH+P+GI+V Sbjct: 177 RHTSFASLSVLPEINEDIEVLINVEDLRVDTYRSSGAGGQHINKTDSAVRITHLPSGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ- 313 +E+SQH NRL AMK+L+A+LY +++K ++ + K +IRTY + Sbjct: 237 QCQNERSQHANRLAAMKILQAKLYALKQKEAQDKLQSI-KGDYKEIAWGSQIRTYTLNPF 295 Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 I DHR N+ + ++ VL G +DD+I L Sbjct: 296 NLIKDHRTNMEIGNVQAVLDGELDDLIFACLHW 328 >gi|47218188|emb|CAF97052.1| unnamed protein product [Tetraodon nigroviridis] Length = 409 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 143/329 (43%), Positives = 205/329 (62%), Gaps = 5/329 (1%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 D + ++P+I I + K+ E + T++ D D +R+LA+ E K+ Sbjct: 79 DELRAKRTRVSLLAPLIRSIRELETKQMEMVETETLLEDE--DPALRELAETERENCVKD 136 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 I++L +I LL+P++ D +LE+ AG GG EA LF ++F MY+ YA W + Sbjct: 137 IQDLSKKILDLLIPEEEADLNELVLEVTAGVGGQEAMLFTAEVFDMYQGYAQHHGWSFDT 196 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L +D GG + A+ISGR + +MKFE GVHRVQRVP TE GR+HTS TVAVLP+ Sbjct: 197 LEYMTSDLGGLRHASASISGRLCYKKMKFEGGVHRVQRVPKTEKQGRMHTSTMTVAVLPQ 256 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 EI I +D+RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR + Sbjct: 257 PTEISFTINQKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVAECQQERSQLKNREK 316 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 AMK LRA+LY ++ + ++R RK+QIG+ RSE+IRTYNF+Q RITDHRI +TL+ + Sbjct: 317 AMKALRAKLYSLKLEEETSKRYNQRKIQIGTKGRSEKIRTYNFAQDRITDHRIGMTLHDI 376 Query: 329 EYVLQGY--IDDIINPLLTAHQAKMIGSA 355 + L G +D++ + + + + Sbjct: 377 KNFLLGEDLLDEMNSSVCEFSNQEALMEL 405 >gi|167032113|ref|YP_001667344.1| peptide chain release factor 2 [Pseudomonas putida GB-1] gi|166858601|gb|ABY97008.1| peptide chain release factor 2 [Pseudomonas putida GB-1] Length = 304 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 160/309 (51%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ ++ + + QDL + + N ++ + D+ E ++ + Sbjct: 2 LAQVVETLDKLSNGLGDCQDLLDMAVEENDENAVGDVVAELEELEENL-----AKLEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S+ + G K Sbjct: 57 MFSGEMDMNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIIELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + +++I Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ + + K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 LEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + L Sbjct: 294 QYLEASLKQ 302 >gi|326330854|ref|ZP_08197155.1| peptide chain release factor 2 [Nocardioidaceae bacterium Broad-1] gi|325951384|gb|EGD43423.1| peptide chain release factor 2 [Nocardioidaceae bacterium Broad-1] Length = 372 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 86/352 (24%), Positives = 156/352 (44%), Gaps = 10/352 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A++ +++ D T +S + +++ + + +DL + Sbjct: 25 DLDAMRKEIADLGEQVAAPDLWDDQDNATRVTGRLSLLQGELNKFTELSSRIEDLELMVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D++ ++ E+ ++K + LE L D + ++ IR+G GG +A Sbjct: 85 MAQEEGDADTLAESEAELGRVKKAVESLEI----RTLLSGEYDSREALVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A K+ VEV +S ++ G K I + + E+G HR+ Sbjct: 141 ADFAEMLMRMYVRWAERNKYPVEVFDTSYAEEAGLKSATFAIHAPYAYGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V V+P +++I DI++D R+SG GGQ VNTTDSAV Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVPVLEQTDEIEIDENDIKVDVYRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 R+THIPTG +V+ + A ++ +K + K + + Sbjct: 261 RLTHIPTGTVVSCQNEKSQLQNKAAAMIVLKAKLLALKKAEEEAQLKELKGDVA-ASWGD 319 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ-AKMIGS 354 ++R Y + + + D R + + V G ID + + + A+ Sbjct: 320 QMRNYVLNPYQIVKDLRTTYEVGNPQAVFDGDIDGFLEAGIRWRRGAEKAEQ 371 >gi|33864328|ref|NP_895888.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9313] gi|33641108|emb|CAE22237.1| peptide-chain-release factor RF-2 [Prochlorococcus marinus str. MIT 9313] Length = 375 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 92/342 (26%), Positives = 165/342 (48%), Gaps = 6/342 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L R ++E ++ + ++ + + ++++ + D + Sbjct: 26 DVPALNARQQDLEQLAAQPDFWNDQQNAQKQMRQLDEVKAQLTQITLWRSAVNDAQATLE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E D E + K++R+ + L D + +L I AG GG++A Sbjct: 86 LY--DLEPDDEMLSEAQSGLKQLRQGLDRWELERLLSGEYDKEGAVLSINAGAGGTDAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A V V S+ ++ G K I GR + ++ E G HR+ R Sbjct: 144 WAQMLLRMYTRWAEDHDMTVTVDELSEGEEAGIKSATVEIEGRYAYGYLRNEKGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A V ++P+ + ++DIP +D+ + T R+ G+GGQ+VN ++AVRI Sbjct: 204 ISPFNANGKRQTSFAGVEIMPKIDQEVELDIPEKDLEVTTSRSGGAGGQNVNKVETAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTG+ V + E+SQ QN+ +A+ +L+A+L + +++ A E + R I + Sbjct: 264 LHIPTGLAVRCTQERSQLQNKEKALALLKAKLMVIAQEQRAAEIADIR-GDIVEAAWGNQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y F + + D R ++ V+ G +D I LL Sbjct: 323 IRNYVFHPYQMVKDLRTAEETTDVQAVMNGDLDRFIQTLLRQ 364 >gi|312142853|ref|YP_003994299.1| peptide chain release factor 2 [Halanaerobium sp. 'sapolanicus'] gi|311903504|gb|ADQ13945.1| peptide chain release factor 2 [Halanaerobium sp. 'sapolanicus'] Length = 346 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 113/349 (32%), Positives = 181/349 (51%), Gaps = 14/349 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEE 59 + + +L++ A IE M++S D ++ + + IS ++K E Sbjct: 1 MIYFDK-DELESEKAAIEKEMAQSGFWDDKENARHKSQRLDKLKKRLKVISELEEKFDEI 59 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + + + E+ ++ + + + L + DD + IL I G Sbjct: 60 EIYQQLAAEEG------ENLREELEQSFSQLEKKLDNLELKLRLNEPYDDHNAILSIHPG 113 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 GG+E+ + L RMY R+A +++E L S D+ G K + ISG F +K E Sbjct: 114 AGGTESQDWAEMLLRMYRRWAESSGYQLETLEFSAGDEAGVKSVTLLISGDYAFGYLKGE 173 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVN 238 GVHR+ R+ ++SGR HTS A+V VLPE + +VDI D+RI+T RASG+GGQHVN Sbjct: 174 RGVHRLVRISPFDSSGRRHTSFASVDVLPELDDELEVDIDENDLRIETYRASGAGGQHVN 233 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TDSAVRITH PTG++V S++SQH+N+ AMK+L ++L +++ + A + R + Sbjct: 234 KTDSAVRITHQPTGVVVQCQSQRSQHKNKNVAMKILSSKLLELKEEAQAEKIEDLR-GEH 292 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y I DHR + ++ VL GY+D+ I L Sbjct: 293 KEIAWGSQIRSYVLHPYNMIKDHRTDFEEGNVDKVLDGYLDEFIEEYLK 341 >gi|224534879|ref|ZP_03675448.1| peptide chain release factor 2 [Borrelia spielmanii A14S] gi|224513819|gb|EEF84144.1| peptide chain release factor 2 [Borrelia spielmanii A14S] Length = 350 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 177/342 (51%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + K + A + +K+ + + + +DL + Sbjct: 14 KEIQAKIEKYEKEINQKNFWNDPKKAQKVIKAQRILKNKVDPWVELINKIKDLDDLCEII 73 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ +I L + ++ L K+ D L I +G GG+EA +V Sbjct: 74 ENEKDINSLEIEFNVLEKQYKDLLTI-----SYFKEELDANGAFLTIHSGAGGTEACDWV 128 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 129 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 187 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 188 PFDAAKKRHTSFASVFVDPVIDEKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 247 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 248 IETGIVTQSQSDRSQHKNKDMAMKVLKSRLYEYYKNKEDEKNKSKQDTKKEISWGN---Q 304 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 305 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 346 >gi|288817909|ref|YP_003432256.1| peptide chain release factor RF-2 [Hydrogenobacter thermophilus TK-6] gi|288787308|dbj|BAI69055.1| peptide chain release factor RF-2 [Hydrogenobacter thermophilus TK-6] gi|308751508|gb|ADO44991.1| peptide chain release factor 2 [Hydrogenobacter thermophilus TK-6] Length = 369 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 109/351 (31%), Positives = 180/351 (51%), Gaps = 11/351 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I +K +I++ MS + + K E + I +++ K T+ Sbjct: 24 DISSMKEELKKIDMSMSSTNFWEDQGKAKEITQRRKWLEETIKEFERIKSTL---ETLQE 80 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 E + + + + ++ + D + L ++AG GG+EA Sbjct: 81 LLEEVDEEDLETLSMIAEEIQSVEKPIRDLEIKTFLSEEMDKNNAYLTVQAGAGGTEACD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A ++VEV+ + +D G K I G + +K ESGVHR+ R Sbjct: 141 WASMLLRMYRRWAEKHGYEVEVIDINPDDVAGIKSATLLIKGPYAYGYLKGESGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ R HTS A+V+V+P+ E +++I EDI+++T RASG+GGQ+VN TD+AVRI Sbjct: 201 ISPFDANARRHTSFASVSVVPQIDEKINIEIREEDIQMETFRASGAGGQYVNKTDTAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRS 303 HIPTGI V E+SQ QNRL+A+++L+A+LY +E +++ ++ A K IG G Sbjct: 261 RHIPTGITVSCQQERSQFQNRLKALELLKAKLYQLELQKLEEKKKALEGEKTDIGWG--- 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 +IR+Y F + + D R L + ++ V+ G ID I L + + Sbjct: 318 YQIRSYVFQPYQMVKDLRTGLEVGNVDAVMDGDIDSFIEEYLRWKAKEKVK 368 >gi|226953405|ref|ZP_03823869.1| peptide chain release factor 2 [Acinetobacter sp. ATCC 27244] gi|294651888|ref|ZP_06729178.1| peptide chain release factor RF2 [Acinetobacter haemolyticus ATCC 19194] gi|226835836|gb|EEH68219.1| peptide chain release factor 2 [Acinetobacter sp. ATCC 27244] gi|292822211|gb|EFF81124.1| peptide chain release factor RF2 [Acinetobacter haemolyticus ATCC 19194] Length = 297 Score = 201 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 98/299 (32%), Positives = 153/299 (51%), Gaps = 9/299 (3%) Query: 52 YDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKS 111 +D+ ++ D ++ + + ++V A + + + + + D Sbjct: 2 FDRLAEQLDDAKAMLDLAVEADD--ESLLLDVQAELDSAEQALGNLEFRRMFSNPMDPNP 59 Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 C LEI++G+GG+EA + L RMY R+ +K E++ SD D G K + G Sbjct: 60 CFLEIQSGSGGTEAQDWASMLLRMYLRWIERHGFKAELMEVSDGDVAGIKSATIRVDGEF 119 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRAS 230 + ++ ESGVHR+ R +++ HTS + V + PE + ++DI D+R DT RAS Sbjct: 120 AYGWLRTESGVHRLVRKSPFDSNNNRHTSFSAVFISPEIDDNIEIDINPSDVRTDTYRAS 179 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQH+N TDSAVR+TH PTGI+V +++SQH NR A K LRA+LY++E + Sbjct: 180 GAGGQHINKTDSAVRLTHAPTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMSKRNEAA 239 Query: 290 S--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 240 QALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTKAVLDGDLDKFIEASLKQ 295 >gi|309809397|ref|ZP_07703259.1| peptide chain release factor 2 [Lactobacillus iners SPIN 2503V10-D] gi|312870788|ref|ZP_07730894.1| peptide chain release factor 2 [Lactobacillus iners LEAF 3008A-a] gi|312873174|ref|ZP_07733233.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2062A-h1] gi|315653886|ref|ZP_07906802.1| peptide chain release factor RF2 [Lactobacillus iners ATCC 55195] gi|308170308|gb|EFO72339.1| peptide chain release factor 2 [Lactobacillus iners SPIN 2503V10-D] gi|311091407|gb|EFQ49792.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2062A-h1] gi|311093664|gb|EFQ52002.1| peptide chain release factor 2 [Lactobacillus iners LEAF 3008A-a] gi|315488582|gb|EFU78228.1| peptide chain release factor RF2 [Lactobacillus iners ATCC 55195] Length = 359 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 173/340 (50%), Gaps = 6/340 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +LK A E +M++ + + A + + K+ Y D T + + Sbjct: 15 DNLKESIAINEQKMADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELY 74 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N + E L +I + + + E++ LL K D + +LEI +G GG+EA + Sbjct: 75 NMEPENDMLMEITAEVEKLKNEFNDYELHLLLSGKYDDH--NALLEIHSGAGGTEAMDWA 132 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY+R+ EV D+ G K + + G F +K E+GVHR+ R+ Sbjct: 133 NMLFRMYQRWCDSHNLTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRIS 192 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V+PE + +++I +D+RID R+SG+GGQH+N T SAVRITH Sbjct: 193 PFDSAKRRHTSFASVEVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITH 252 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+ + +++SQ QNR AM +LRA+L+ +E + + A + Q + +IR Sbjct: 253 LPTGIVTSSQAQRSQFQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQ-KEINFGSQIR 311 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR + V+ G +D I L Sbjct: 312 SYVFHPYNMVKDHRTDYETSDTIGVMNGNLDPFIYAYLQW 351 >gi|254469263|ref|ZP_05082668.1| peptide chain release factor 2 [Pseudovibrio sp. JE062] gi|211961098|gb|EEA96293.1| peptide chain release factor 2 [Pseudovibrio sp. JE062] Length = 322 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 166/317 (52%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + +Q + Q+L + G+ D + D A+ + A+ +++ +L Sbjct: 1 MRERQQLDDSINGVRKLEQDLVDNQELIEM-GEMEDDQSVVDEAEGALKAMLEQVNKL-- 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D +EI +G GG+E+ + L RMY R+ +KVE++ +D Sbjct: 58 --QLQSLLSGEADGNDTYIEINSGAGGTESQDWASMLLRMYRRWGEQHGYKVELMEYNDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + MK E+GVHR+ R+ +++ R HTS A+V V P I+ Sbjct: 116 EEAGIKSATLLVKGENAYGWMKTEAGVHRLVRISPYDSNARRHTSFASVWVYPVIDDSIN 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D RIDT RASG+GGQHVNTTDSAVRITH PTGI+V SE+SQH+NR A +L Sbjct: 176 IEINEADCRIDTYRASGAGGQHVNTTDSAVRITHNPTGIVVQCQSERSQHKNRATAWDML 235 Query: 274 RARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E +R + + A K IG G +IR+Y + + D R + Sbjct: 236 RARLYEAELQRREEQANKDAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTAPSD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDKFMEATLAHR 309 >gi|210615399|ref|ZP_03290526.1| hypothetical protein CLONEX_02742 [Clostridium nexile DSM 1787] gi|210150248|gb|EEA81257.1| hypothetical protein CLONEX_02742 [Clostridium nexile DSM 1787] Length = 313 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 103/318 (32%), Positives = 168/318 (52%), Gaps = 9/318 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + K+S ++ L + D N +S + ++ + Sbjct: 1 MKELKSLKDFLEKVSQLTTSYEDIGVLIEMAYDENDESLLPEIESELTAFQQGYEE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 I L D + I+ + AG GG+E+ + L+RMY R+A + + VEVL D Sbjct: 57 -IRIQTLLSGEYDKDNAIVTLHAGAGGTESCDWANMLYRMYTRWAERKGFSVEVLDFLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 D G K + ++G + +K E GVHR+ R+ A+G+ TS A+ V+P+ + D Sbjct: 116 DVAGLKAVTFQVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCDVVPDIEDDID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +++ +D++IDT RASG+GGQHVN T SA+RITHIPTGI+V +E+SQH N+ +AM++L Sbjct: 176 IELNDDDLKIDTYRASGAGGQHVNKTSSAIRITHIPTGIVVQCQNERSQHNNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 +A+LY ++ + A + S R +I +IR+Y + DHR N+ + VL Sbjct: 236 KAKLYLLKEQEQAEKVSDIR-GEIKEIGFGNQIRSYVMQPYTLVKDHRTNVESGNVSSVL 294 Query: 333 QGYIDDIINPLLTAHQAK 350 G ID +N L A + Sbjct: 295 DGNIDLFMNAYLKAQSME 312 >gi|114052118|ref|NP_001040455.1| mitochondrial translational release factor 1 [Bombyx mori] gi|95102962|gb|ABF51422.1| mitochondrial translational release factor 1 [Bombyx mori] Length = 401 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 128/344 (37%), Positives = 200/344 (58%), Gaps = 8/344 (2%) Query: 18 EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 E E +S+ + + I PI++ + + L + DSEI+ Sbjct: 48 EHENLLSK---MKKSSEEARRLQEIKPIVNVLEQRIALYDSIESLKELNKKEGDDSEIKK 104 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + + E K ++E+++++ L+L + + +LE+ AG GG EA LF +LF MY+ Sbjct: 105 MIKEEAAIYLKRLKEIDDDLQ-LILLEPPLTEGGVLLELTAGAGGQEAMLFAKELFNMYQ 163 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 YA + W+V++ S + GG ++ I G GV M+ E+GVHRVQR+PATE GR+ Sbjct: 164 SYAINKGWEVDIASFDLTEIGGVRKGSMLIQGFGVPELMRMEAGVHRVQRIPATEKGGRI 223 Query: 198 HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 HTS TVA+LP+ +EI+++IP D+ I+T RASG+GGQHVNTTDSAVR+ H PTG V Sbjct: 224 HTSTVTVAILPQPSEIELNIPERDVVIETKRASGAGGQHVNTTDSAVRLIHTPTGTTVEC 283 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRI 316 +SQ +N+ AM+ LR L + + + A + + RK Q+GSG+R+E+IRTYNF Q R+ Sbjct: 284 QEGRSQIKNKQIAMQKLRTLLLEKQIQEQALKLQSERKSQVGSGNRNEKIRTYNFPQDRV 343 Query: 317 TDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 T+HR T + L+ ++G ++ + LL + K++ E Sbjct: 344 TEHRDGGGTFHNLKGFMEGGEQLEQLQESLLKKERHKLLLEEIE 387 >gi|325287611|ref|YP_004263401.1| hypothetical protein Celly_2713 [Cellulophaga lytica DSM 7489] gi|324323065|gb|ADY30530.1| hypothetical protein Celly_2713 [Cellulophaga lytica DSM 7489] Length = 365 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 95/344 (27%), Positives = 160/344 (46%), Gaps = 12/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I E + + + + + +D K DL ++ Sbjct: 22 DIDAKLIEIENEEEKTLAPDFWNNAQVAQAQMKVLQSKKKWVKDFDDAKILIADLEVLLE 81 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + I +LE + + D D+ + IL+I AG GG+E+ Sbjct: 82 FLKEGDVTAEEVENHYNKAKTHIEDLE----FKNMLSDEGDELTAILQITAGAGGTESCD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY +A +K++ L+ + D G K + I G F +K E+GVHR+ R Sbjct: 138 WAAMLMRMYLMWAEKNGYKIKELNYQEGDVAGIKTVTLEIEGDYAFGWLKGENGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P I+++I DI I T R+SG+GGQ+VN ++ V++ Sbjct: 198 ISPFDSNAKRHTSFASVYVYPLADDSIEIEINPADIEITTARSSGAGGQNVNKVETKVQL 257 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 TH PTGI + S +SQH NR AMK+L+++LY++E ++ RS K++I G Sbjct: 258 THKPTGIQISCSDSRSQHDNRATAMKMLKSQLYEIELRKKQEARSEIEAGKMKIEWG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y + + D R ++ V+ G ID + L Sbjct: 315 SQIRNYVMHPYKLVKDVRTAEETGNVDAVMDGQIDPFLKAYLMM 358 >gi|264679119|ref|YP_003279026.1| peptide chain release factor 2 [Comamonas testosteroni CNB-2] gi|262209632|gb|ACY33730.1| peptide chain release factor 2 [Comamonas testosteroni CNB-2] Length = 299 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 157/303 (51%), Gaps = 12/303 (3%) Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + + + +L + + D+ + + A +++ L E+ + + Sbjct: 3 TLEKLTTELADNSELFEMSKEEGDDAGLETIE-----AETAKLKPLIEELEFRRMFGGEA 57 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D +C ++I+AG GG+EA + L R Y +YA + +K V + D G K + Sbjct: 58 DPLNCFIDIQAGAGGTEACDWASMLLRQYLKYAERKGFKATVEEETPGDVAGIKSATIKV 117 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDT 226 G + ++ E+GVHR+ R ++SG HTS +++ V PE + +++I D+R DT Sbjct: 118 EGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFSSLFVYPEIDDSIEININPSDVRTDT 177 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A + LR+RLYD E ++ Sbjct: 178 YRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYDFEMRKR 237 Query: 286 ANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 E+ + K +G G +IR+Y RI D R N+ + + VL G +D I Sbjct: 238 MEEQQKLEDTKTDVGWG---HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEAS 294 Query: 344 LTA 346 L Sbjct: 295 LKQ 297 >gi|259501054|ref|ZP_05743956.1| peptide chain release factor RF2 [Lactobacillus iners DSM 13335] gi|309807259|ref|ZP_07701230.1| peptide chain release factor 2 [Lactobacillus iners LactinV 03V1-b] gi|309808840|ref|ZP_07702723.1| peptide chain release factor 2 [Lactobacillus iners LactinV 01V1-a] gi|312874339|ref|ZP_07734370.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2052A-d] gi|312875084|ref|ZP_07735101.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2053A-b] gi|325911468|ref|ZP_08173880.1| peptide chain release factor 2 [Lactobacillus iners UPII 143-D] gi|259167748|gb|EEW52243.1| peptide chain release factor RF2 [Lactobacillus iners DSM 13335] gi|308166350|gb|EFO68558.1| peptide chain release factor 2 [Lactobacillus iners LactinV 03V1-b] gi|308167916|gb|EFO70051.1| peptide chain release factor 2 [Lactobacillus iners LactinV 01V1-a] gi|311089374|gb|EFQ47801.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2053A-b] gi|311090105|gb|EFQ48518.1| peptide chain release factor 2 [Lactobacillus iners LEAF 2052A-d] gi|325476818|gb|EGC79972.1| peptide chain release factor 2 [Lactobacillus iners UPII 143-D] Length = 359 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 6/340 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +LK A E +M++ + + A + + K+ Y D T + + Sbjct: 15 DNLKESIAINEQKMADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELY 74 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N + E L +I + + N LL DD + +LEI +G GG+EA + Sbjct: 75 NMEPENDMLMEITAEVEKLKNEF--NNYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWA 132 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY+R+ EV D+ G K + + G F +K E+GVHR+ R+ Sbjct: 133 NMLFRMYQRWCDSHNLTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRIS 192 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V+PE + +++I +D+RID R+SG+GGQH+N T SAVRITH Sbjct: 193 PFDSAKRRHTSFASVEVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITH 252 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+ + +++SQ QNR AM +LRA+L+ +E + + A + Q + +IR Sbjct: 253 LPTGIVTSSQAQRSQFQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQ-KEINFGSQIR 311 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR + V+ G +D I L Sbjct: 312 SYVFHPYNMVKDHRTDYETSDTIGVMNGNLDPFIYAYLQW 351 >gi|187932243|ref|YP_001892228.1| peptide chain release factor 2 [Francisella tularensis subsp. mediasiatica FSC147] gi|187713152|gb|ACD31449.1| peptide chain release factor 2 [Francisella tularensis subsp. mediasiatica FSC147] Length = 325 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 172/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + +L + + D + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISKTLETLSELLELGKE---DESLMQE 58 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + + EI +LE + + D + L+I++G+GG+EA + L RMY R Sbjct: 59 IAKDTQNVASEIEKLE----FRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPTDLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|332241803|ref|XP_003270069.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 1 [Nomascus leucogenys] gi|332241805|ref|XP_003270070.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 2 [Nomascus leucogenys] Length = 445 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 210/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLNPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDRRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIVE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|315127590|ref|YP_004069593.1| peptide chain release factor 2 [Pseudoalteromonas sp. SM9913] gi|315016104|gb|ADT69442.1| peptide chain release factor 2 [Pseudoalteromonas sp. SM9913] Length = 300 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I + + L + + D + D AQ E+ + +++ LE + + Sbjct: 2 VETIDNLVAGTDDVEGLVELAVEAE-DQDTFDEAQSELADLNQQLEGLE----FRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 + D L++++G+GG+EA + L RMY R+ + +KVE++ ++D D G K Sbjct: 57 SHDSNDAYLDLQSGSGGTEAQDWCNILLRMYLRWGEAKGFKVELVEATDGDVAGIKGATV 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 SG + ++ E+GVHR+ R ++SGR HTS A+ V PE I++DI D+RI Sbjct: 117 RFSGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFVYPEVDDNIEIDINPSDLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVNTT+SAVRITH+PT +V +E+SQH+N+ +AMK L+A+L+++E + Sbjct: 177 DVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNERSQHKNKAQAMKQLKAKLFELELQ 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 237 QQNAEKQSQEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|251780395|ref|ZP_04823315.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084710|gb|EES50600.1| peptide chain release factor 2 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 325 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 106/329 (32%), Positives = 175/329 (53%), Gaps = 13/329 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E + ++T+E I I ++ K + + L ++ D + +S + Sbjct: 1 MQEDGFWNDTKRAEEITKESKRIKDKIQRVESVQSKLDDIEVLKEMMDDDDEESAYEIIN 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I+ + E + +E +L D + IL + G GG++A + L RMY R+ Sbjct: 61 NIKEIEEEIDNYNME------ILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVEV+ + D+ G K + + G + +K E G+HR+ R+ A+G+ T Sbjct: 115 CEKKNYKVEVIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE E D+DI EDI++DT RASG+GGQH+N TDSAVRITHIPTG++V Sbjct: 175 SFASMEVLPELTKEQDIDIRSEDIKVDTYRASGAGGQHINKTDSAVRITHIPTGVVVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ N+ AM +L+A+L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQFSNKDTAMGMLKAKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N+ + + V+ G +D IN L Sbjct: 294 KDHRTNVEVSNVTAVMDGDLDLFINSYLK 322 >gi|238792836|ref|ZP_04636467.1| Peptide chain release factor 2 [Yersinia intermedia ATCC 29909] gi|238727944|gb|EEQ19467.1| Peptide chain release factor 2 [Yersinia intermedia ATCC 29909] Length = 289 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 159/294 (54%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + + + +A + ++ + + D +C L++ Sbjct: 2 EDVSGLLELAIEADDEETFNEA-----IAELDILDGKLGQLEFRRMFSGEYDSANCYLDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ SD D G K I G F + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAESKGFKTEIIEESDGDVAGLKSATIKIIGDYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITH+PT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + Sbjct: 177 HVNKTESAVRITHLPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 NKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 287 >gi|296394151|ref|YP_003659035.1| peptide subunit release factor 2 [Segniliparus rotundus DSM 44985] gi|296181298|gb|ADG98204.1| peptide chain release factor 2 [Segniliparus rotundus DSM 44985] Length = 372 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 164/346 (47%), Gaps = 6/346 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++E + ++ + + E + ++ + + + DLH + Sbjct: 24 DLDKLRAEIADLETQAADPSLWEDQERGQEVTSGLARKQATLRAVTGLRSRLDDLHVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEI-NYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + +E E++ E E L D++ ++ IR+G GG +AA Sbjct: 84 LAEDEEGAQGQEALEEADTERKTLRAEIESLEVRTLLNGEYDEREALVTIRSGAGGIDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K VEV S ++ G K + + + E G HR+ Sbjct: 144 DWAQMLMRMYIRWAERHKHPVEVYDISYAEEAGIKSATFAVKSAYAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V VLP +D+P +IR+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQGRRQTSFADVEVLPVVGTTDHIDVPEAEIRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+PTGI+V +EKSQ QN+L AM+VL+A+L + R + +A K G+ Sbjct: 264 ITHLPTGIVVTCQNEKSQLQNKLSAMRVLQAKLLERRRHEEQEQLNAL-KGDGGT-SWGT 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 ++R+Y + + + D R VL G ID + + ++ Sbjct: 322 QMRSYVLAPYQMVKDLRTEYEESNPGAVLDGAIDGFLESGIRWRRS 367 >gi|118590063|ref|ZP_01547467.1| peptide chain release factor 2 [Stappia aggregata IAM 12614] gi|118437560|gb|EAV44197.1| peptide chain release factor 2 [Stappia aggregata IAM 12614] Length = 322 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 113/317 (35%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + IS I +Q + +L + + S + D + + ++ N Sbjct: 1 MRERQQLDDSISGIKSLEQDLSDNIELIELGEMEDDKSVVADAEEA-----LRGLKGKVN 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 ++ L D LEI +G GG+E+ + L RMY R+A +KVEVL D Sbjct: 56 QLQLNSLLSGEADANDTYLEINSGAGGTESQDWASMLLRMYRRWAEKHGFKVEVLEYHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS ++ V P ID Sbjct: 116 EEAGIKSATLLIKGENAYGWLKTESGVHRLVRISPYDSNARRHTSFSSAWVYPVIDDSID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI D RIDT RASG+GGQHVNTTDSAVRITH PTGI+V SE+SQH+NR A +L Sbjct: 176 IDINESDCRIDTYRASGAGGQHVNTTDSAVRITHQPTGIVVQCQSERSQHKNRATAWSML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +ARLY+ E K+ A A K IG G +IR+Y + + D R + Sbjct: 236 KARLYEAELKKREEAASAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTSPGD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMEAALAQR 309 >gi|13470493|ref|NP_102062.1| peptide chain release factor 2 [Mesorhizobium loti MAFF303099] gi|14021235|dbj|BAB47848.1| translation releasing factor RF-2 [Mesorhizobium loti MAFF303099] Length = 340 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 112/334 (33%), Positives = 165/334 (49%), Gaps = 16/334 (4%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 R ++ + KL E + I+ + Q ++ L + + + I + Sbjct: 2 RAEDASLWNEPLEAQKLMRERQGLEEGIAAVKGLTQALEDNIGLIELGEEEGDEGVITEA 61 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 + L D LEI AG GG+E+ + L RMY R Sbjct: 62 EAAIRSMQGEAKA-----RQVETLLSGEADANDTYLEIHAGAGGTESQDWASMLLRMYTR 116 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A R++KVEVL D ++ G K I G + +K ESGVHR+ R+ +++ R H Sbjct: 117 WAERRRFKVEVLEVHDGEEAGIKSATLMIKGHNAYGWLKTESGVHRLVRISPYDSNARRH 176 Query: 199 TSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVT 256 TS A+V V P I++D+ D+RIDT R+SGSGGQHVNTTDSAVRITHI TGI + Sbjct: 177 TSFASVWVYPVIDDTIEIDVSESDVRIDTYRSSGSGGQHVNTTDSAVRITHIATGIAVAC 236 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG 314 +E+SQH+NR +A ++LR+RLY+ E K+ +A K IG G +IR+Y Sbjct: 237 QAERSQHKNRAKAWEMLRSRLYEEELKKREAIANATEASKSDIGWG---HQIRSYVLQPY 293 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +DD + L+ Sbjct: 294 QLVKDLRTGVESTSPSSVLDGDLDDFMEASLSQR 327 >gi|300741817|ref|ZP_07071838.1| peptide chain release factor 2 [Rothia dentocariosa M567] gi|300381002|gb|EFJ77564.1| peptide chain release factor 2 [Rothia dentocariosa M567] Length = 375 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 170/348 (48%), Gaps = 6/348 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +K ++ + S D +A+S ++++ D+ ++ Sbjct: 25 DLEGIKCALEDLSQQASAPELWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVE 84 Query: 68 DHN-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D ++ E A KE+R+ +E+ L+L D + ++ IR+G GG +AA Sbjct: 85 LAQTEDESSKEDLLAEAEAECKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAA 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + +VL +S ++ G K + ++ F R+ E+G HR+ Sbjct: 145 DFAEMLLRMYLRWAEKNGYPTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P + D +IP +I++D R+SG GGQ VNTTDSAVR Sbjct: 205 RISPFDNQGRRQTSFAAVEVIPLIEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVR 264 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V+ +EKSQ QNR A++VL++RL + +++ ++ S + Sbjct: 265 MTHIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLMLRQEQEDAKKKELAGDIKAS--WGD 322 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R VL G ++ I + + Sbjct: 323 QMRSYVLHPYQMVKDLRTGYEEGNTSSVLDGGLNRFIEEGIRWRASGR 370 >gi|304322131|ref|YP_003855774.1| hypothetical protein PB2503_12974 [Parvularcula bermudensis HTCC2503] gi|303301033|gb|ADM10632.1| hypothetical protein PB2503_12974 [Parvularcula bermudensis HTCC2503] Length = 315 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + I+ ++ + + +L + D+ + D+ ++ Sbjct: 1 MQERTHLENQIAALTAMQTELDDNLELAEMAEAEGDDAAVDDIQAALADLKDRA-----G 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D + +EI AG GG+E+ + L+RMY R+A KV+++ Sbjct: 56 RAELEALLSGEADANNAFVEIHAGAGGTESNDWANMLYRMYVRWAQQHGHKVDIIEEQGG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS ++V V PE + + Sbjct: 116 EEAGIKSATILVKGINAYGWLKVESGVHRLVRISPYDSNARRHTSFSSVWVYPEIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +++ D R+DT RASG+GGQHVNTTDSAVRITH PTGI+V SE+SQH+NR A +L Sbjct: 176 IEVAESDCRVDTFRASGAGGQHVNTTDSAVRITHEPTGIVVQCQSERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E +R E A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEMELQRREEEANAQAASKTDIGWG---HQIRSYVLQPYQMVKDLRTGVESPSPDA 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDAFMGAALAQR 309 >gi|3328106|gb|AAD12759.1| translational release factor 1 [Homo sapiens] Length = 445 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 208/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEESRRSLNRRHAELAPLAAIYQETQETEQAIEELGS 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++ +LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKRDEKQLLELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E L+ + D GG A ISG GV+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFEPLNYTPADYGGLHHAAARISGDGVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|258541170|ref|YP_003186603.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-01] gi|256632248|dbj|BAH98223.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-01] gi|256635305|dbj|BAI01274.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-03] gi|256638360|dbj|BAI04322.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-07] gi|256641414|dbj|BAI07369.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-22] gi|256644469|dbj|BAI10417.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-26] gi|256647524|dbj|BAI13465.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-32] gi|256650577|dbj|BAI16511.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-01-42C] gi|256653568|dbj|BAI19495.1| translation peptide chain release factor 2 (RF-2) [Acetobacter pasteurianus IFO 3283-12] Length = 323 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 102/318 (32%), Positives = 166/318 (52%), Gaps = 13/318 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E ++ I + + ++ +L + + D+++ + + +E + E Sbjct: 1 MMRERTLLANQIEGVEALETNVRDTSELIELA-EAEGDADLVAEGMATLRDLAEEAKRRE 59 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D C LE+ AG GG+EA + L RMY R+A +KV ++ SS+ Sbjct: 60 T----ESLLSGEADSNDCYLEVNAGAGGTEAQDWTEMLLRMYTRWAEAHGYKVTLMESSE 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 + G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V P I Sbjct: 116 GEQAGLKSATILVSGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWVYPVIDDSI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +++I D+++DT RASG+GGQHVN TDSA+RITH+PTGI+V +++SQH+NR AM++ Sbjct: 176 EIEINDADLKVDTFRASGAGGQHVNKTDSAIRITHMPTGIVVACQTDRSQHRNRATAMQM 235 Query: 273 LRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E ++ + K IG G +IR+Y + + + D R + + Sbjct: 236 LRARLYEAELQKREAEAAAAEAAKTDIGWG---HQIRSYVLAPYQMVKDLRTGVETGNPD 292 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 AVLDGDLDAFMAAALAMR 310 >gi|270132345|ref|NP_666072.3| peptide chain release factor 1, mitochondrial precursor [Mus musculus] gi|27151667|sp|Q8K126|RF1M_MOUSE RecName: Full=Peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|20810364|gb|AAH28898.1| Mitochondrial translational release factor 1 [Mus musculus] gi|26336078|dbj|BAC31724.1| unnamed protein product [Mus musculus] gi|148703819|gb|EDL35766.1| mitochondrial translational release factor 1, isoform CRA_a [Mus musculus] Length = 446 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 130/360 (36%), Positives = 208/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + S + L +A ++P+ + + +Q ++L + Sbjct: 77 QKYMEDLNKEYQTLDQCLQGISENEGDRRALHRRHAQLAPLAAVYQEIQEAEQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++L E I+++I L +E+ L+PK+ D ILE+ +G T Sbjct: 137 LCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLERLVPKEKYDWSDVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSYYKHWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+R+DT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ RKLQ Sbjct: 317 NTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L+G +D +I LL + + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAISE 436 >gi|309803856|ref|ZP_07697941.1| peptide chain release factor 2 [Lactobacillus iners LactinV 11V1-d] gi|325913296|ref|ZP_08175664.1| peptide chain release factor 2 [Lactobacillus iners UPII 60-B] gi|329920534|ref|ZP_08277266.1| peptide chain release factor 2 [Lactobacillus iners SPIN 1401G] gi|308164090|gb|EFO66352.1| peptide chain release factor 2 [Lactobacillus iners LactinV 11V1-d] gi|325477399|gb|EGC80543.1| peptide chain release factor 2 [Lactobacillus iners UPII 60-B] gi|328936210|gb|EGG32663.1| peptide chain release factor 2 [Lactobacillus iners SPIN 1401G] Length = 359 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 6/340 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +LK A E +M++ + + A + + K+ Y D T + + Sbjct: 15 DNLKESIAINEQKMADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELY 74 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N + E L +I + + N LL DD + +LEI +G GG+EA + Sbjct: 75 NMEPENDMLMEITAEVEKLKNEF--NNYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWA 132 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY+R+ EV D+ G K + + G F +K E+GVHR+ R+ Sbjct: 133 NMLFRMYQRWCDSHNLTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRIS 192 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V+PE + +++I +D+RID R+SG+GGQH+N T SAVRITH Sbjct: 193 PFDSAKRRHTSFASVEVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITH 252 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+ + +++SQ QNR AM +LRA+L+ +E + + A + Q + +IR Sbjct: 253 LPTGIVTSSQAQRSQFQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQ-KEINFGSQIR 311 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR + V+ G +D I L Sbjct: 312 SYVFHPYNMVKDHRTDYETSDTIGVMNGNLDPFIYAYLQW 351 >gi|167755601|ref|ZP_02427728.1| hypothetical protein CLORAM_01115 [Clostridium ramosum DSM 1402] gi|237734350|ref|ZP_04564831.1| peptide chain release factor 2 [Mollicutes bacterium D7] gi|167704540|gb|EDS19119.1| hypothetical protein CLORAM_01115 [Clostridium ramosum DSM 1402] gi|229382580|gb|EEO32671.1| peptide chain release factor 2 [Coprobacillus sp. D7] Length = 365 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 12/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI---SPIISKISIYDQKKQEEQDLHT 64 I + + + + D K Y + + + + + + Sbjct: 25 DIEAYRREIEGLTVITLQEGFWDDANKAKVTYDKLNKMKKTTDQYDLLETTLTSLDETYE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + + + ++ ++L DD + I+EI G GG+E Sbjct: 85 LVKNTEDQEFKE-----ILESDYTVFEKELSKFETMMLLSGEHDDLNAIVEIHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RYAA + WKVEVL D D G K + I G V+ +K E GVHR Sbjct: 140 SQDWAEMLFRMYQRYAANKGWKVEVLDYLDGDVAGIKSVTMLIKGDNVYGHLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS A+V V+PE +++I D++IDT RASG+GGQH+N TDSA Sbjct: 200 LVRLSPFDSAKRRHTSFASVDVMPEFNNEIEIEIQSTDLKIDTYRASGAGGQHINKTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PT I+V S++SQ QNR +AM +L+++LY + ++ A+E + Q Sbjct: 260 VRITHLPTNIVVTCQSQRSQIQNREQAMVMLKSKLYQLMLEKQASELKELKGEQ-KEIAW 318 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D+R + VL G +D I L Sbjct: 319 GSQIRSYVLHPYSLVKDNRSGYESNNPKAVLDGDLDGFIYAYLK 362 >gi|89890713|ref|ZP_01202222.1| peptide chain release factor 2 (RF-2) [Flavobacteria bacterium BBFL7] gi|89516858|gb|EAS19516.1| peptide chain release factor 2 (RF-2) [Flavobacteria bacterium BBFL7] Length = 386 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 90/349 (25%), Positives = 157/349 (44%), Gaps = 12/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 QI + +E + + + + Y +D + Sbjct: 40 QIEAKEIEITNLEEKTFSPDFWNDAKAAELIMKELRNKKQWTTDYATATTLAEDTEVLYE 99 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + A +LE + + + DD S +L+I AG GG+E+ Sbjct: 100 FFKEGDASEDEVMAKYNAAVDITEKLE----FKNMLSNEGDDMSAVLQITAGAGGTESCD 155 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY +A +KV+ L+ D G K + I G F +K E+GVHR+ R Sbjct: 156 WAEMLMRMYMMWAQKNNYKVKELNFQAGDVAGIKTVTLEIEGDYSFGWLKGENGVHRLVR 215 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P I++DI DI+ D R+SG+GGQ+VN ++ + Sbjct: 216 ISPFDSNAKRHTSFASVYVYPLADDTIEIDINPADIKWDFARSSGAGGQNVNKVETKAIL 275 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 TH P+GI++ S +SQ +NR +AM++L+++L+++E ++ R K++I G Sbjct: 276 THHPSGIVIHNSETRSQLENREKAMQMLKSQLFEIELQKRNAARDEIESGKMKIEWG--- 332 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR Y + + D R ++ V+ G ID + L + Sbjct: 333 SQIRNYVMHPYKLVKDVRTAHETGNVDAVMNGDIDAFLKAFLMESGQEK 381 >gi|332381658|gb|AEE66505.1| peptide chain release factor 2 [Bordetella pertussis CS] Length = 293 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 164/295 (55%), Gaps = 12/295 (4%) Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + +L + +SD + + + ++++ LE + + + D +C ++ Sbjct: 5 LADSCELVELA-LADSDDATLEAIEHDADRFQEKLETLE----FRRMFANPADPLNCFVD 59 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I+AG GG+EA + L R Y +YA + +K E+L S+ D G K I G F Sbjct: 60 IQAGAGGTEAQDWASMLLRQYLKYAERKGFKAEILEESEGDVAGLKSATIKIEGEYAFGY 119 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGG 234 ++ E+GVHR+ R ++SG HTS A+V V PE +V++ D+RIDT RASG+GG Sbjct: 120 LRTETGVHRLVRKSPFDSSGGRHTSFASVFVYPEVDESFEVEVNPADLRIDTYRASGAGG 179 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--A 291 QH+N TDSAVRITH P+GI+V +++SQH+NR AM++L+++LY++E + E+ Sbjct: 180 QHINKTDSAVRITHAPSGIVVQCQNDRSQHRNRAEAMQMLKSKLYELEMRNRMTEQQKLE 239 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K +G G +IR+Y Q RI D R N+ + + VL G +D I L Sbjct: 240 DSKTDVGWG---HQIRSYVLDQSRIKDLRTNVEISNTQKVLDGDLDPFIQASLKQ 291 >gi|261345593|ref|ZP_05973237.1| peptide chain release factor 2 [Providencia rustigianii DSM 4541] gi|282566073|gb|EFB71608.1| peptide chain release factor 2 [Providencia rustigianii DSM 4541] Length = 299 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 102/305 (33%), Positives = 168/305 (55%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I +Q ++ + L + + D E + E+ ++ ++ +LE + + Sbjct: 1 MDTIDQLEQGIEDVEGLLELAIEA-DDEETFNETDAELEQLQGKLEQLE----FRRMFSG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 56 EYDSANCYIDLQAGSGGTEAQDWASMLMRMYLRWAESKGFKTEIIEESDGDVAGLKSATI 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++ GR HTS ++ + PE +ID++I D+RI Sbjct: 116 KIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDIDIEINPADLRI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AM+ L+A+LY++E + Sbjct: 176 DVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMRQLKAKLYELEIQ 235 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + ++ K IG G +IR+Y RI D R + + VL G +D I Sbjct: 236 KKNADKQAMEENKSDIGWG---SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIE 292 Query: 342 PLLTA 346 L A Sbjct: 293 ASLKA 297 >gi|194040714|ref|XP_001926694.1| PREDICTED: peptide chain release factor 1, mitochondrial-like isoform 1 [Sus scrofa] gi|311266318|ref|XP_003131053.1| PREDICTED: peptide chain release factor 1, mitochondrial-like isoform 2 [Sus scrofa] Length = 446 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 206/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + + + L +A ++P+ + +Q ++L + Sbjct: 77 QKYMEDLSKEYQTLDRCLQHISAPEGDRRSLNRRHAELAPLAVIYKEIQEAEQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I ++I L +E+ L+PK+ D ILE+ +G T Sbjct: 137 MCKSLNKQDEKQLQELALEEKRTIAQKINMLYHELFQSLVPKEKYDKNDVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y++ + W E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSSYKHWTFELLNYTPADYGGLHHAAARISGANVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ H+PTG++V E+SQ +N+ A++VLRARLY ++ ++ + RKLQ Sbjct: 317 NTTDSAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKEKCQQQSARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I LL + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDLLIQRLLQTADEEAITE 436 >gi|126697716|ref|YP_001086613.1| peptide chain release factor 2 [Clostridium difficile 630] gi|115249153|emb|CAJ66964.1| Peptide chain release factor 2 (RF-2) [Clostridium difficile] Length = 328 Score = 201 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 108/334 (32%), Positives = 173/334 (51%), Gaps = 16/334 (4%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + ++ +E ++ + + ++ + L + + + DS RD+ Sbjct: 1 MNQQDFWNDNEVAQRVLQENKSLKETLEEYESLKSLLEDIEVLIEIGLEEDDDSVERDIE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + EK L D + IL I AGTGG +A + L RMY R+ Sbjct: 61 KSIESMEEKLSEM-----KIKTLLNGEYDKNNAILSINAGTGGLDAQDWAQMLLRMYIRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + +KV++L + + G K + G + +K E GVHR+ R+ + SG+ HT Sbjct: 116 SESKGYKVKLLDIISDPEAGIKTATILVEGTNAYGYLKSEKGVHRLVRISPFDPSGKRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ V PE I+V+I D++IDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 176 SFASIDVTPELDENIEVEINPSDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQGR 315 +E+SQH N+ RAM++L A+L +++ + + QI G +IR+Y F + Sbjct: 236 NERSQHLNKDRAMRLLMAKLIELKELEQKEKIEDIQGKYSQITWG---SQIRSYVFQPYK 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + DHR N ++ V+ G ID IN L ++ Sbjct: 293 LVKDHRTNAEFGNVDSVMNGNIDLFINEYLKMNK 326 >gi|256851470|ref|ZP_05556859.1| peptide chain release factor 2 [Lactobacillus jensenii 27-2-CHN] gi|260660891|ref|ZP_05861806.1| peptide chain release factor 2 [Lactobacillus jensenii 115-3-CHN] gi|282933470|ref|ZP_06338846.1| peptide chain release factor 2 [Lactobacillus jensenii 208-1] gi|297206285|ref|ZP_06923680.1| peptide chain release factor RF2 [Lactobacillus jensenii JV-V16] gi|256616532|gb|EEU21720.1| peptide chain release factor 2 [Lactobacillus jensenii 27-2-CHN] gi|260548613|gb|EEX24588.1| peptide chain release factor 2 [Lactobacillus jensenii 115-3-CHN] gi|281302401|gb|EFA94627.1| peptide chain release factor 2 [Lactobacillus jensenii 208-1] gi|297149411|gb|EFH29709.1| peptide chain release factor RF2 [Lactobacillus jensenii JV-V16] Length = 332 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 98/334 (29%), Positives = 163/334 (48%), Gaps = 12/334 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + KL E + + Q +E+ ++ + D ++ Sbjct: 1 MADPDFWNNQESAQKLISETNKLKEKRDHFNDLAQAFSDEETALELLKEEPDDDLQVEVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + LL D + ++EI G GG+EA + L RMY+R+ Sbjct: 61 TDLEKLKDSFHQ-----YELNLLLSGKYDANNALMEIHPGAGGTEAMDWAQMLMRMYQRF 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + E+ D+ G K + I G + +K E GVHR+ R+ +A+ R HT Sbjct: 116 SEAHGFTFEIDDYEPGDEAGVKSVSILIKGTNAYGLLKGEMGVHRLVRISPFDAAKRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A+V V+PE + +VDI D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + Sbjct: 176 SFASVEVIPEIDDSIEVDINPADLRIDVFRSSGAGGQHINKTSSAVRITHLPTGIVTTSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +++SQ QN+ AM LRA+L+ +E ++ E+ + +Q +IR+Y F + Sbjct: 236 AQRSQFQNKETAMNALRAKLFQLEEEKKRKEKEKLKGVQ-QDIAWGSQIRSYVFHPYSMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR N + V+ G +D++I L ++ Sbjct: 295 KDHRTNFETSDVNGVMDGKLDNLIYSFLQWRLSQ 328 >gi|221066286|ref|ZP_03542391.1| peptide chain release factor 2 [Comamonas testosteroni KF-1] gi|220711309|gb|EED66677.1| peptide chain release factor 2 [Comamonas testosteroni KF-1] Length = 299 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 98/303 (32%), Positives = 157/303 (51%), Gaps = 12/303 (3%) Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + + + +L + + D+ + + A +++ L E+ + + Sbjct: 3 TLEKLTTELADNVELFEMSKEEGDDAGLETIE-----AETAKLKPLIEELEFRRMFGGEA 57 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D +C ++I+AG GG+EA + L R Y +YA + +K V + D G K + Sbjct: 58 DPLNCFIDIQAGAGGTEACDWASMLLRQYLKYAERKGFKATVEEETPGDVAGIKSATIKV 117 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDT 226 G + ++ E+GVHR+ R ++SG HTS +++ V PE + +++I D+R DT Sbjct: 118 EGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFSSLFVYPEIDDSIEININPSDVRTDT 177 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A + LR+RLYD E ++ Sbjct: 178 YRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYDFEMRKR 237 Query: 286 ANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 E+ + K +G G +IR+Y RI D R N+ + + VL G +D I Sbjct: 238 MEEQQKLEDTKTDVGWG---HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLDVFIEAS 294 Query: 344 LTA 346 L Sbjct: 295 LKQ 297 >gi|241888662|ref|ZP_04775969.1| peptide chain release factor 2 [Gemella haemolysans ATCC 10379] gi|241864685|gb|EER69060.1| peptide chain release factor 2 [Gemella haemolysans ATCC 10379] Length = 372 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 113/350 (32%), Positives = 184/350 (52%), Gaps = 11/350 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I D R AEIE M E+ + + I ++ + + + ++ Sbjct: 25 KIEDKTERVAEIENMMLEADFWNDSEAASLLVTESKSIKKELDEFSEMIDYLEHSEEMVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + ++L ++ + ++ LL + D+ + ILEI AG GG++A Sbjct: 85 FLKDEDD--EEIYQDLLETVVNLKNSVEDFSFRLLFSEEYDNNTAILEIHAGAGGTDATD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + + RMYER+ + K L+ D G K I G + +K E GVHRV R Sbjct: 143 WSELMLRMYERFFTKQGLKYSYLNYQSGDITGVKSATIKIEGDFAYGLLKGEKGVHRVVR 202 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 + + SG+ HTS A++ V+PE + +++I ED++IDT RA G+GGQH+NTTDSAVR Sbjct: 203 ISPFDPSGKRHTSFASIDVIPEFNDDEINIEINNEDLKIDTYRAQGAGGQHINTTDSAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDR 302 ITH+PTGI+V + +E+SQ +N+ AMK L+++LY +E + E +A R Q IG G Sbjct: 263 ITHLPTGIVVQSQAERSQIKNKDAAMKNLKSKLYQLEIEEKEKELAAIRGEQKDIGWG-- 320 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y F+ + DHR N + ++ V+ G I D I+ L + + Sbjct: 321 -SQIRSYVFTPYTMVKDHRTNYEVSTVDKVMDGEIIDFIDAYLHYNIKEK 369 >gi|227893185|ref|ZP_04010990.1| peptide chain release factor RF2 [Lactobacillus ultunensis DSM 16047] gi|227865051|gb|EEJ72472.1| peptide chain release factor RF2 [Lactobacillus ultunensis DSM 16047] Length = 332 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 101/329 (30%), Positives = 166/329 (50%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + K + + + K + + ++ +D+ T + + + + E Sbjct: 1 MAQPDFWNDQEKAQKLINDNNLLKEKRDSFLKLQKGYEDVSTALELLREEPDADLQKETE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + LL D+ + +LEI G GG+EA + L RMY+RY Sbjct: 61 NDLANLQEEF--HNYELDLLLSGKYDNHNALLEIHPGAGGTEAMDWGQMLLRMYQRYCDS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K E+ ++ G K + A I G+ + +K E+GVHR+ R+ +A+ R HTS A Sbjct: 119 AGFKFEINDYEPGEEAGLKSVSARIVGKNAYGMLKSENGVHRLVRISPFDAAKRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE I +DI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEVDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F + Sbjct: 239 SQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYNLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + V+ G + I L Sbjct: 296 DLRTGYETADVNGVMDGKLQPFIYSYLQW 324 >gi|115403013|ref|XP_001217583.1| conserved hypothetical protein [Aspergillus terreus NIH2624] gi|114189429|gb|EAU31129.1| conserved hypothetical protein [Aspergillus terreus NIH2624] Length = 447 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 117/370 (31%), Positives = 194/370 (52%), Gaps = 28/370 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L + ++ +S K + ++ I + +D + +L +++ D + Sbjct: 49 SLAAEHKSLSAKLEDSFD----AKTAKRIGELAAITKVLKEWDTANESIAELKSMLEDPD 104 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+R LA ++ + + + L + + L+P+ + C+LEIR G GG EA LF Sbjct: 105 TDGELRSLAVEDLESSKNNLPVLSDSLKQALVPRHPFAELPCLLEIRPGAGGDEAGLFAF 164 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQR 187 +L RMY + + R ++ V+ D G E + + G + ++ ESGVHRVQR Sbjct: 165 ELLRMYTAFCSRRGFRSSVIKLDVADGAGDDRLTEAILEVEANGAYDVLRTESGVHRVQR 224 Query: 188 VPATEASGRVHTSAATVAVLPEA---------------AEIDVDIPLEDIRIDTMRASGS 232 VPATE+ GR HTSA +V VLP D + +++R + MRA G+ Sbjct: 225 VPATESKGRTHTSAVSVMVLPSFPDSGAGSDSALNVDDPNSDYYVDPQEVRSEKMRAGGA 284 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SA+R+THIPTGI+V+ +SQH NR +A ++LRARL + ++ E Sbjct: 285 GGQHVNKTESAIRLTHIPTGIVVSMQDSRSQHANRKKAWQILRARLAEARQEAREQELVE 344 Query: 292 NRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 R+ +G R ++IRTYN+ Q R TDHR T++ L+ VL G ++ +++ + T Sbjct: 345 LRRGVMGGVARMGRGDKIRTYNYGQSRCTDHRSGTTIHNLDSVLDGGDGLETVMDSVRTW 404 Query: 347 HQAKMIGSAS 356 + + + + Sbjct: 405 LVDQEVAAMA 414 >gi|284929451|ref|YP_003421973.1| peptide chain release factor 2 [cyanobacterium UCYN-A] gi|284809895|gb|ADB95592.1| bacterial peptide chain release factor 2 (bRF-2) [cyanobacterium UCYN-A] Length = 344 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 94/338 (27%), Positives = 162/338 (47%), Gaps = 7/338 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L+ ++E + D + +S S++ Y Q + +D ++ Sbjct: 3 ALQASIKDLENTTIQPNFWDNPETAQKISQELSNFKSQLDQYHQWYNKLEDTKIIMDLLI 62 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D++ E ++++ + + L T D K IL I G GG++A + Sbjct: 63 LDND--KSLLEEAQNNITQLKKNLDNWDLQQLLSGTYDIKGAILNINTGVGGTDAQDWSE 120 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+ + +KV ++ S+ D+ G K G F +K E G HR+ R+ Sbjct: 121 MLLRMYRRWGESQGYKVNLVEISEGDEAGIKSATLEFEGCYAFGYLKGEKGTHRLVRISP 180 Query: 191 TEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 A+G+ TS + V+P E +I V+IP +D+ I T R+ G GGQ+VN ++AVRI H Sbjct: 181 FNANGKRQTSFTGIEVMPKLEGNDIKVEIPDKDLEITTTRSGGKGGQNVNKVETAVRIVH 240 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI V + E+SQ QN+ +A+ +L+A+L + +++ A + + R I +IR Sbjct: 241 LPTGISVRCTQERSQLQNKEKALILLKAKLLIIAQEQRAKKIAEIR-GDIVEAAWGNQIR 299 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +Y F + + D R N+ + V+ G + I L Sbjct: 300 SYVFHPYQMVKDLRTNVETTNINDVMDGDLGLFIEAYL 337 >gi|221217380|ref|ZP_03588851.1| peptide chain release factor 2 [Borrelia burgdorferi 72a] gi|221192658|gb|EEE18874.1| peptide chain release factor 2 [Borrelia burgdorferi 72a] Length = 348 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 12 NEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLFEIA 71 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 72 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 126 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 127 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 185 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 186 PFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 245 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 246 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 302 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 303 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 344 >gi|309804632|ref|ZP_07698697.1| peptide chain release factor 2 [Lactobacillus iners LactinV 09V1-c] gi|308166024|gb|EFO68242.1| peptide chain release factor 2 [Lactobacillus iners LactinV 09V1-c] Length = 359 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 107/340 (31%), Positives = 170/340 (50%), Gaps = 6/340 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +LK A E +M++ + + A + + K+ Y D T + + Sbjct: 15 DNLKESIAINEQKMADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSAALADAKTAVELY 74 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N + E L +I + + N LL DD + +LEI +G GG+EA + Sbjct: 75 NMEPENDMLMEITAEVEKLKNEF--NNYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWA 132 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY+R+ EV D+ G K + + G F +K E+GVHR+ R+ Sbjct: 133 NMLFRMYQRWCDSHNLTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRIS 192 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ R HTS A+V V+PE + +++I +D+RID R+SG+GGQH+N T SAVRITH Sbjct: 193 PFDSAKRRHTSFASVEVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITH 252 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+ + +++SQ QNR AM +LRA+L+ +E + + A + Q + +IR Sbjct: 253 LPTGIVTSSQAQRSQFQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQ-KEINFGSQIR 311 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y F + DHR + V+ G +D I L Sbjct: 312 SYVFHPYNMVKDHRTDYETSDTIGVMNGNLDPFIYAYLQW 351 >gi|150021425|ref|YP_001306779.1| peptide chain release factor 2 [Thermosipho melanesiensis BI429] gi|166225118|sp|A6LN93|RF2_THEM4 RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|149793946|gb|ABR31394.1| peptide chain release factor 2 [Thermosipho melanesiensis BI429] Length = 369 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 111/356 (31%), Positives = 175/356 (49%), Gaps = 24/356 (6%) Query: 6 HKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPIISKI 49 ++I ++K R+ +I E M ES + + IS +I Sbjct: 7 KQRIDEVKKRYEDIVKVFHPEDKKKELEELEKLMGESDFWNDQKRA----KEISQNAQRI 62 Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + ++ + E + + +I L+ + D Sbjct: 63 RKIIDDMVDIENKLEDLEAGLELLEEDATFLDTIKQLIDDIERKVKTFELELILNEKFDS 122 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 + L I G GG+E+ + L RMY R+A R + V+++ ++ G K + I G Sbjct: 123 SNAYLSIHPGAGGTESQDWASMLLRMYMRWAERRGFDVQIVDYQPGEEAGIKSAMLYIKG 182 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMR 228 V+ +K+E GVHR+ R+ +A+ R HTS A+V V+PE + DV+I ED+RIDT R Sbjct: 183 EYVYGYLKYERGVHRLVRISPFDANKRRHTSFASVNVMPEIEDDIDVEINPEDLRIDTYR 242 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQ+VN T+SAVRITHIPTGI+V +E+SQ QN+ AMKVL+ARLY +E ++ Sbjct: 243 ASGAGGQYVNKTESAVRITHIPTGIVVTCQTERSQLQNKETAMKVLKARLYQLELEKRQK 302 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINP 342 + + ++ +IR+Y F + DHR N+ ++ V+ G ID I Sbjct: 303 QLEEI-QGELKDISWGNQIRSYVFQPYTMVKDHRTNVETGNIDAVMDGDIDIFIES 357 >gi|291167022|gb|EFE29068.1| peptide chain release factor 2 [Filifactor alocis ATCC 35896] Length = 338 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 172/344 (50%), Gaps = 12/344 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 +K + +L+M ++ + + + IY E +++ + Sbjct: 1 MKQEKQQNDLKMEDADFWNNLELSQHIVKRNKELERTLDIYSSAFSELEEVEILFELTKE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 DSE+ + + + +++ +L L D + IL I AG+GG +A + Sbjct: 61 DSELEKELEQCINELSEKMEQL----KIQTLLDGEYDGNNAILSIHAGSGGLDAQDWAQM 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ ++V L S + + G K + I G + +K E GVHR+ R+ Sbjct: 117 LLRMYLRFCHDMGYRVIELDSLSDSEAGIKSVTLQIEGPNAYGFLKSEKGVHRIVRISPF 176 Query: 192 EASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++SG+ HTS +V V+PE + +VDI D++IDT RASG+GGQHVN TDSAVRITHIP Sbjct: 177 DSSGKRHTSFTSVDVIPEMDDTVEVDIDTNDLKIDTYRASGAGGQHVNKTDSAVRITHIP 236 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIR 307 TGI++ +E+SQH NR AMK+L ++L D++ + + QI G +IR Sbjct: 237 TGIVITCQNERSQHSNRETAMKMLFSKLMDIKIREHKEKIEDISGEYSQIAWG---SQIR 293 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +Y F + DHR N + ++ V+ G I IN L + Sbjct: 294 SYVFQPYTLVKDHRTNHEIGSVQSVMDGNIMPFINAYLKQQKQD 337 >gi|311111708|ref|YP_003982930.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931] gi|310943202|gb|ADP39496.1| peptide chain release factor RF2 [Rothia dentocariosa ATCC 17931] Length = 375 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 99/348 (28%), Positives = 169/348 (48%), Gaps = 6/348 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +K ++ + S D +A+S ++++ D+ ++ Sbjct: 25 DLEGIKCALEDLSQQASAPELWDDPEHAQRVTSALSHKQAELNRLTNLASRIDDVEVMVE 84 Query: 68 DHN-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + E A KE+R+ +E+ L+L D + ++ IR+G GG +AA Sbjct: 85 LAQTEDESSAEDLLAEAEAECKELRKKLDELEVLVLLSGEYDQREAVVTIRSGAGGVDAA 144 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 F L RMY R+A + +VL +S ++ G K + ++ F R+ E+G HR+ Sbjct: 145 DFAEMLLRMYLRWAEKNGYPTKVLDTSYAEEAGLKSVTFEVNAPYAFGRLSVEAGTHRLV 204 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + GR TS A V V+P + D +IP +I++D R+SG GGQ VNTTDSAVR Sbjct: 205 RISPFDNQGRRQTSFAAVEVIPLIEQTDALEIPESEIKVDVFRSSGPGGQSVNTTDSAVR 264 Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V+ +EKSQ QNR A++VL++RL + +++ ++ S + Sbjct: 265 MTHIPTGIVVSMQNEKSQIQNRAAALRVLQSRLLMLRQEQEDAKKKELAGDIKAS--WGD 322 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 ++R+Y + + D R VL G ++ I + + Sbjct: 323 QMRSYVLHPYQMVKDLRTGYEEGNTSSVLDGGLNRFIEEGIRWRASGR 370 >gi|317507095|ref|ZP_07964856.1| peptide chain release factor 2 protein [Segniliparus rugosus ATCC BAA-974] gi|316254589|gb|EFV13898.1| peptide chain release factor 2 protein [Segniliparus rugosus ATCC BAA-974] Length = 372 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 167/347 (48%), Gaps = 8/347 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++E + ++ + + E + ++ + + + DLH + Sbjct: 24 DLSKLEAEIADLESQAADPSLWEDQDRGQEVTSGLARRQATLRAVTALRSRLDDLHVLYE 83 Query: 68 DHNSDS--EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 DS E ++ + ++E + L D++ ++ IR+G GG +A Sbjct: 84 LAEDDSGAEGQEALAEADAERKALREDIET-LEVRTLLNGEYDEREALVTIRSGAGGIDA 142 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A + L RMY R+A K VE+ S ++ G K + + + E G HR+ Sbjct: 143 ADWAQMLMRMYIRWAERHKHPVEIYDISYAEEAGIKSATFAVKSAYAYGTLSVEQGTHRL 202 Query: 186 QRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP ++IP ++R+D R+SG GGQ VNTTDSAV Sbjct: 203 VRISPFDNQGRRQTSFADVEVLPVVGTTDHIEIPESEVRVDVYRSSGPGGQSVNTTDSAV 262 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+TH+PTG++V +EKSQ QN+L AM+VL+A+L + R+ + +A K GS Sbjct: 263 RLTHLPTGVVVTCQNEKSQLQNKLSAMRVLQAKLLERRRQEEQEQLNAL-KGDGGS-SWG 320 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 ++R+Y + + + D R + VL G ID + + +A Sbjct: 321 TQMRSYVLAPYQMVKDLRTEYEVGNPTTVLDGDIDGFLESGIRWRRA 367 >gi|330504612|ref|YP_004381481.1| peptide chain release factor 2 [Pseudomonas mendocina NK-01] gi|328918898|gb|AEB59729.1| peptide chain release factor 2 [Pseudomonas mendocina NK-01] Length = 304 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 161/309 (52%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ I+ I + +DL + + N + + D+ E + + + Sbjct: 2 LAQIVETIDDLTGSLADSRDLLEMAAEENDEGAVNDIVAEVERLREILEK-----LEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C L+I+AG+GG+EA + L RMY R+A R + E++ S+ + G K Sbjct: 57 MFSGEMDANNCYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFSAEIVELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + +++I Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPA 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ + + K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 LEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + L Sbjct: 294 GYLEASLKQ 302 >gi|127511745|ref|YP_001092942.1| peptide chain release factor 2 [Shewanella loihica PV-4] gi|126637040|gb|ABO22683.1| bacterial peptide chain release factor 2 (bRF-2) [Shewanella loihica PV-4] Length = 293 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 D ++ + L + + + + D ++ + + + +D C Sbjct: 2 DSGLEDVEGLLELAVEEDDEDTFNDANSELAGLEKRLEE-----LEFRRMFSGPNDASDC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I++G+GG+EA + + RMY R+ + +K E++ +D D G K +G Sbjct: 57 YLDIQSGSGGTEAQDWANMVLRMYLRWGEAKGYKPELIEVTDGDVAGIKGATIKFTGEYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 F ++ E+GVHR+ R ++SG+ HTS +V V PE + ++DI D+RID RASG Sbjct: 117 FGSLRTETGVHRLVRKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPADLRIDVYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER- 289 +GGQHVN T+SAVRITH+PT +V +++SQH+N+ AMK L+A+L+++E + E+ Sbjct: 177 AGGQHVNRTESAVRITHLPTNTVVQCQNDRSQHKNKDTAMKQLKAKLFELEMHKQNAEKQ 236 Query: 290 -SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AAEDAKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQSVLDGDLDKFIEASLK 290 >gi|238783657|ref|ZP_04627677.1| Peptide chain release factor 2 [Yersinia bercovieri ATCC 43970] gi|238715370|gb|EEQ07362.1| Peptide chain release factor 2 [Yersinia bercovieri ATCC 43970] Length = 289 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 157/294 (53%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + + + + ++ + + D +C L++ Sbjct: 2 EDVTGLLELAIEADDEETFNEAVAE-----LDILDGKLGQLEFRRMFSGEYDSANCYLDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ SD D G K I G F + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAESKGFKTEIIEESDGDVAGLKSATIKIIGEYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + Sbjct: 177 HVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQVLED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 NKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 287 >gi|225549349|ref|ZP_03770322.1| peptide chain release factor 2 [Borrelia burgdorferi 94a] gi|225370207|gb|EEG99647.1| peptide chain release factor 2 [Borrelia burgdorferi 94a] Length = 348 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 12 NEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 71 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 72 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 126 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 127 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 185 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 186 PFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 245 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 246 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 302 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 303 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 344 >gi|168051671|ref|XP_001778277.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670374|gb|EDQ56944.1| predicted protein [Physcomitrella patens subsp. patens] Length = 387 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 170/347 (48%), Gaps = 13/347 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R E+++ +++ + K + E A+S + + + + E L + Sbjct: 46 KKLLARVQELDVELAKPNLWENAAKAGQFSRERGALSGQVKSVISMEDELLEHVGLAELA 105 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + D+ Q + + L D +SC +E++AG GG+E+ Sbjct: 106 HEENDTQVVTDVTQGLAELRKTASE-----RELVALLSGEHDSRSCFIEVQAGAGGTESM 160 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + RMY +A R ++V V+ ++ G K + G + K E+GVHR+ Sbjct: 161 DWAAMVMRMYRMWAQTRDYEVTVVDEMPGEEAGIKRATIRVDGLYAYGYAKTEAGVHRLV 220 Query: 187 RVPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A R HTS A VAV+P + +E+ ++I D+RI+ RA G+GGQHVN T+SAV Sbjct: 221 RISPFDAGKRRHTSFAAVAVIPALDESEVSIEIGESDLRIERFRAGGAGGQHVNKTESAV 280 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RI HIPTGI+ +++SQH+N+ A+ +L++RL+ +E R A + + + Sbjct: 281 RIIHIPTGIVTQCQADRSQHRNKATALSMLQSRLHQMEVTRRAKANAQHTQSL-SDVSWG 339 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y + + D R N + +L G ID I L + A Sbjct: 340 NQIRSYVLQPYQMVKDLRTNYEVSDPSSILDGEIDGFIMAYLASSSA 386 >gi|190891331|ref|YP_001977873.1| peptide chain release factor 2 (rf-2) protein [Rhizobium etli CIAT 652] gi|190696610|gb|ACE90695.1| peptide chain release factor 2 (rf-2) protein [Rhizobium etli CIAT 652] Length = 342 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 165/333 (49%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + + + + + + I+ Q +Q+ +D V + E Sbjct: 2 NNKAEDPNLWNDAAEAQKLMRERQQLDDGINGVRQLEQQLKD--NVELIELGEEEGDGGV 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E K ++ + D LE+ +G GG+E+ + L RMY R+ Sbjct: 60 VKEAEDALKALKAEAARRQVEAMLSGEADGNDTYLEVHSGAGGTESQDWANMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +++KVE+L D ++ G K + G + +K ESGVHR+ R+ +++ R HT Sbjct: 120 AERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNARRHT 179 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S +++ V P I+++I D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 180 SFSSIWVYPVVDDSINIEINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVACQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR 315 E+SQH+NR +A ++LRAR+Y+ E K+ A A K IG G +IR+Y + Sbjct: 240 QERSQHKNRAKAWEMLRARMYEAELKKREEAANAEAASKTDIGWG---HQIRSYVLQPYQ 296 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + D R + + VL G +++ + L Sbjct: 297 LVKDLRTGVASTAPDDVLDGDLNEFMEAALAHR 329 >gi|114771120|ref|ZP_01448560.1| peptide chain release factor 2 [alpha proteobacterium HTCC2255] gi|114548402|gb|EAU51288.1| peptide chain release factor 2 [alpha proteobacterium HTCC2255] Length = 375 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 175/352 (49%), Gaps = 15/352 (4%) Query: 13 KNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++R E + + KL E +S IS Q+ +L + Sbjct: 29 EHRMEEFDAMSENPDLWNNPEKAQKLMRERQMLSDSISNFKELSSNLQDNIELIELGEIE 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + I++ ++ ++ + L D L+I AG GG+E+ + Sbjct: 89 EDEVIIKEAENNILIIQQESAK-----QELEALLNGEVDSNDTFLQINAGAGGTESCDWA 143 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R+A + ++V+ + S D+ G K + I G + MK ESGVHR+ R+ Sbjct: 144 NMLARMYVRWAEQKGYQVDRMEESVGDEAGIKSVTYQIKGHNAYGWMKSESGVHRLVRIS 203 Query: 190 ATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++ + HTS ++V V P + D++I +IR+DT R+SG+GGQHVNTTDSAVRITH Sbjct: 204 PFDSNAKRHTSFSSVWVYPVVDDNIDIEINPSEIRVDTYRSSGAGGQHVNTTDSAVRITH 263 Query: 249 IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERI 306 IPT I+V SSEKSQHQNR M L++RLY++E ++ + + + K G G+ +I Sbjct: 264 IPTNIVVQSSEKSQHQNRANCMAALKSRLYELEMRKRTEGIQEAHDNKGDAGWGN---QI 320 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+Y + + D R N+ + VL G +D + L A + ++ Sbjct: 321 RSYVLHPYQMVKDLRTNVETSDSQGVLNGDLDMFMAATLALDVAGKTRAEAQ 372 >gi|148549433|ref|YP_001269535.1| peptide chain release factor 2 [Pseudomonas putida F1] gi|148513491|gb|ABQ80351.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudomonas putida F1] Length = 304 Score = 200 bits (509), Expect = 2e-49, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 162/309 (52%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ ++ + + +DL + + N ++ + D+ + + E ++ + Sbjct: 2 LAQVVETLDKLSGGLADCKDLLDMAVEENDENAVSDVVTE-----LEGLEENLAQLEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S+ + G K Sbjct: 57 MFSGEMDMNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIIELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIDINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ + + K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 LEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + L Sbjct: 294 QYLEASLKQ 302 >gi|109120568|ref|XP_001090893.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 3 [Macaca mulatta] gi|109120570|ref|XP_001090782.1| PREDICTED: peptide chain release factor 1, mitochondrial isoform 2 [Macaca mulatta] Length = 445 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 131/363 (36%), Positives = 210/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLNKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ LLPK+ D ILE+ +G T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLLPKEKYDKNDVILEVTSGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKCQQRSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + + Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAVVE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|313500280|gb|ADR61646.1| PrfB [Pseudomonas putida BIRD-1] Length = 304 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 100/309 (32%), Positives = 161/309 (52%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ ++ + + QDL + + N + + D+ + + E ++ + Sbjct: 2 LAQVVETLDKLSNGLGDCQDLLDMAVEENDEGAVGDVVTE-----LESLEENLAQLEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S+ + G K Sbjct: 57 MFSGEMDMNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIIELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + +++I Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIEINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ + + K IG G +IR+Y RI D R + + VL G +D Sbjct: 237 LEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCQKVLDGDLD 293 Query: 338 DIINPLLTA 346 + L Sbjct: 294 QYLEASLKQ 302 >gi|297848140|ref|XP_002891951.1| hypothetical protein ARALYDRAFT_474798 [Arabidopsis lyrata subsp. lyrata] gi|297337793|gb|EFH68210.1| hypothetical protein ARALYDRAFT_474798 [Arabidopsis lyrata subsp. lyrata] Length = 470 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 99/345 (28%), Positives = 166/345 (48%), Gaps = 17/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R + +++ + I K++ E+ +++ + + ++++ E D+ + Sbjct: 124 KKLLVRLKVLSAELNKPDLWNDPIHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLA 183 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + L +D SC +E++AG GG+E+ Sbjct: 184 KEENDTELESETLKAMMDMRRVSKE-----KELEALLSAENDPCSCYIEVQAGAGGTESN 238 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + MY+ +A RK+ V V+ + + G K ++G + K E GVHR+ Sbjct: 239 DWASMVMEMYKTWAQRRKFSVTVVDEAAGEIAGIKRATIKVNGEYSYGYAKAEVGVHRLV 298 Query: 187 RVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++ R HTS A VAV+P V I D+RI+ R+ G+GGQH NTTDSAV Sbjct: 299 RISPFDSGKRRHTSFAAVAVIPILGDGSTRVQINDSDLRIERFRSGGAGGQHANTTDSAV 358 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGD 301 RI HIPTGI +E+SQH N+ AM VL++RL +E R + + + +I G+ Sbjct: 359 RIIHIPTGITATCQNERSQHMNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGN 418 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IRTY R + D R N + + VL+G +D I L+ Sbjct: 419 ---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSFLS 460 >gi|332160509|ref|YP_004297086.1| peptide chain release factor 2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318607022|emb|CBY28520.1| peptide chain release factor 2; programmed frameshift-containing [Yersinia enterocolitica subsp. palearctica Y11] gi|325664739|gb|ADZ41383.1| peptide chain release factor 2 [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863446|emb|CBX73565.1| peptide chain release factor 2 [Yersinia enterocolitica W22703] Length = 289 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 99/294 (33%), Positives = 156/294 (53%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + L + + + + + + ++ + + D +C L++ Sbjct: 2 DDVTGLLELAIEADDEETFNEAVAE-----LDILDGKLGQLEFRRMFSGEYDSANCYLDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ SD D G K I G F + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGDVAGLKSATIKIIGDYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + Sbjct: 177 HVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQMLED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 NKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 287 >gi|149730260|ref|XP_001492759.1| PREDICTED: similar to Mitochondrial translational release factor 1 [Equus caballus] Length = 446 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 127/360 (35%), Positives = 209/360 (58%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + ++ + + + L +A ++P+ + + +Q ++L + Sbjct: 77 RKYMEELNKEYRTLDQCLQRVSANEGDRRSLNRRHAELAPLAAIYREIQEAEQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E + +++ L E+ L+PK+ D ILE+ +G T Sbjct: 137 MCKSLNKQDEKQLQELALEERQTVAQKLNALYRELFQSLVPKEKYDKNDVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y++ ++WK E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSSYKRWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ H+PTG++V E+SQ +N+ A++VLRARLY ++ ++ + RKLQ Sbjct: 317 NTTDSAVRLVHVPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDKRQQQSARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I LL + + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLHGEKCLDHLIQRLLQSADEEAITE 436 >gi|28198320|ref|NP_778634.1| peptide chain release factor 2 [Xylella fastidiosa Temecula1] gi|71897686|ref|ZP_00679931.1| Peptide chain release factor 2 [Xylella fastidiosa Ann-1] gi|182680959|ref|YP_001829119.1| peptide chain release factor 2 [Xylella fastidiosa M23] gi|28056390|gb|AAO28283.1| peptide chain release factor 2 [Xylella fastidiosa Temecula1] gi|71732589|gb|EAO34642.1| Peptide chain release factor 2 [Xylella fastidiosa Ann-1] gi|182631069|gb|ACB91845.1| peptide chain release factor 2 [Xylella fastidiosa M23] gi|307579427|gb|ADN63396.1| peptide chain release factor 2 [Xylella fastidiosa subsp. fastidiosa GB514] Length = 302 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 104/285 (36%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D E+ +V + ++ +LE + D + ++I+AG GG+EA Sbjct: 14 LAEIEQDQEMLQAVLNDVDIYQLQVEKLEFQRM----FSGKMDGANAFVDIQAGAGGTEA 69 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R WK E+L S + G K + G + +K E+GVHR+ Sbjct: 70 QDWAEMLLRMYLRWAEGRGWKAELLEVSGGEVAGIKSATFRVEGDFAYGWLKTETGVHRL 129 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS +V V PE ID++I D++ D R+SG+GGQHVN T+SAV Sbjct: 130 VRKSPFDSDNRRHTSFTSVFVSPEVDDNIDIEINPADLKTDVYRSSGAGGQHVNKTESAV 189 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+P+GI+V +E+SQH NR RAMK+L A+LY+ E ++ E+ K IG G Sbjct: 190 RITHVPSGIVVACQTERSQHANRDRAMKMLAAKLYESEIQKRNAEKDVLEASKSDIGWG- 248 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y Q RI D R + + VL G +D+ I L A Sbjct: 249 --SQIRNYVLDQSRIKDLRTGVERSDTQKVLDGDLDEFIEASLKA 291 >gi|288957379|ref|YP_003447720.1| peptide chain release factor RF-2 [Azospirillum sp. B510] gi|288909687|dbj|BAI71176.1| peptide chain release factor RF-2 [Azospirillum sp. B510] Length = 322 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 156/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ ++ + +L + + + D ++ + Sbjct: 1 MRERTQLDTSVAGYRALERDLSDSLELIEMGEMEEDATVVADAEAQLYGLRDRANK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D C +E+ AG GG+EA + L RMY R+A +K E L + Sbjct: 57 -LQIESLLSGEADANDCFVEVNAGAGGTEAQDWALMLMRMYTRWAEQHGYKTEWLDETPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K E+GVHR+ R+ ++ R TS A V++ P +ID Sbjct: 116 EEAGIKSATVQIKGHNAYGWLKTEAGVHRLVRISPFDSQARRQTSFAAVSISPVIDDKID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I +D RIDT RASG+GGQH+N TDSAVRITHIPT I+V E+SQH+NR +A +L Sbjct: 176 IEINEKDCRIDTYRASGAGGQHINKTDSAVRITHIPTNIVVSCQQERSQHKNRAKAWDML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K + +A K IG G +IR+Y + + D R + + + Sbjct: 236 RARLYERELKIREDAAAALEATKTDIGWG---HQIRSYVLHPYQMVKDLRTEVETSQSQA 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L + Sbjct: 293 VLDGALDPFLEAALASR 309 >gi|302307223|ref|NP_983812.2| ADL284Cp [Ashbya gossypii ATCC 10895] gi|299788896|gb|AAS51636.2| ADL284Cp [Ashbya gossypii ATCC 10895] Length = 397 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 138/349 (39%), Positives = 200/349 (57%), Gaps = 14/349 (4%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 +E +S+ S D ++ ++Y+ +S I+ Y ++L +I D+ Sbjct: 44 AELETLEKLLSKGESFD--VEKQKKYSKLSSIVDTFRAYQDNVHMYRELQDMIAQ---DA 98 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 +R AQ E+ + + + + LLP +K CI+E+R G GG EA +F DL Sbjct: 99 SLRTEAQAELDELAPTLARSADTLLDKLLPPHPFAEKPCIVELRPGVGGIEAMIFTQDLL 158 Query: 134 RMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 MY YA +WK V S+++N G G E + +I G + R+KFESGVHRVQR+PATE Sbjct: 159 NMYIGYAQHHRWKWSVTSATENTTGAGLSEAILSIDEPGSYDRLKFESGVHRVQRIPATE 218 Query: 193 ASGRVHTSAATVAVLPEA------AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + GR HTS A V VLP+ + +IRID MRASG GGQHVNTTDSAVRI Sbjct: 219 SKGRTHTSTAAVVVLPKMAEEAESDAYERTFKPGEIRIDVMRASGKGGQHVNTTDSAVRI 278 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH P+GI + E+SQH+N+ +A ++LRA+L D+ERK + RK Q+ S DRS++ Sbjct: 279 THFPSGIAIHMQEERSQHRNKAKAFQILRAKLADLERKEREARERSARKDQVSSTDRSDK 338 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIG 353 IRTYNF Q R+TDHR ++L+ L V+ G +D++I+ + + Sbjct: 339 IRTYNFPQNRVTDHRCAVSLHALAEVVTGERLDELIDSMARYDSEQKAK 387 >gi|297693940|ref|XP_002824258.1| PREDICTED: peptide chain release factor 1, mitochondrial-like isoform 1 [Pongo abelii] gi|297693942|ref|XP_002824259.1| PREDICTED: peptide chain release factor 1, mitochondrial-like isoform 2 [Pongo abelii] Length = 445 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 133/363 (36%), Positives = 209/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENQRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E AI+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQAIDQKINMLYNELFQSLVPKEKYDKNDVILEVAAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG GV+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTTSVIVLPQPDEVDVKLDPKDLRIDTFRAKGPGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q RI+DHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRISDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIVE 435 Query: 355 ASE 357 + Sbjct: 436 LLD 438 >gi|170759975|ref|YP_001785502.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch Maree] gi|169406964|gb|ACA55375.1| peptide chain release factor 2 [Clostridium botulinum A3 str. Loch Maree] Length = 327 Score = 200 bits (508), Expect = 3e-49, Method: Composition-based stats. Identities = 95/329 (28%), Positives = 173/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + + K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNNIKEAQKITSEEKYLKDKLIKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEETDRFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFSIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE + +++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 175 SFASIEVLPELTDDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINMFITQYLK 322 >gi|88803344|ref|ZP_01118870.1| peptide chain release factor RF-2 [Polaribacter irgensii 23-P] gi|88780910|gb|EAR12089.1| peptide chain release factor RF-2 [Polaribacter irgensii 23-P] Length = 365 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 88/368 (23%), Positives = 167/368 (45%), Gaps = 24/368 (6%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ +R ++ E + + D + + Sbjct: 1 MITLDQLKDIADRIEKLKSYLEIDKKLIEIANEEEKTTNPGFWDHPKEAEVAIKELRFKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 ++ Y D+ + + + + + ++E + + + Sbjct: 61 KWVTDYQHAITLNDDVIVLYEFYKEGDVAETEMDEQFEKVSSFLEDIE----FRNMLSEE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D + ++I AG GG+E+ +V L RMY +A + +K++ L+ D G K I Sbjct: 117 GDSLAATIQITAGAGGTESCDWVEMLSRMYSMWAEKQGFKLKTLNYQAGDVAGIKTITIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRID 225 I G F +K E+GVHR+ R+ +++G+ HT+ +V V P A + + DI I Sbjct: 177 IEGDFAFGWLKGENGVHRLVRISPFDSNGKRHTTFGSVYVFPVADDSIEIAVNPADIEIV 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SG+GGQ+VN ++ V++TH PTGI + S+ +SQH NR AMK+L+++LY++E K+ Sbjct: 237 TARSSGAGGQNVNKVETKVQLTHKPTGIQIQCSNSRSQHDNRATAMKMLKSQLYEIELKK 296 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPL 343 R+ ++ + + +IR Y + + D R ++ V+ G I+ + Sbjct: 297 QQATRADIEAGKLKN-EWGSQIRNYVMHPYKLVKDVRTAYETGNVDAVMDGNINPFLKSY 355 Query: 344 LTAHQAKM 351 L + K Sbjct: 356 LMKNGQKK 363 >gi|225549713|ref|ZP_03770678.1| peptide chain release factor 2 [Borrelia burgdorferi 118a] gi|225369673|gb|EEG99121.1| peptide chain release factor 2 [Borrelia burgdorferi 118a] Length = 348 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 12 NEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 71 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 72 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 126 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 127 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 185 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 186 PFDAAKKRHTSFASVFVDPVIDDKIEITIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 245 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 246 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 302 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 303 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 344 >gi|297172687|gb|ADI23654.1| protein chain release factor B [uncultured Gemmatimonadales bacterium HF4000_15H13] Length = 328 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 105/328 (32%), Positives = 159/328 (48%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D + I S + + + E + E Sbjct: 1 MAQPGFWDKQEAAKAVIEESNSIKSWLEPWQALDGRVS--ELRALVELLEEEDDEELAEE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E+ + + + + DD + I+ I G GG+E+ + L RMY R+A Sbjct: 59 FASGVDELTKGVEALELRTMLQGDDDHRGAIITIHPGAGGTESQDWAQMLVRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + V VL ++ G K I+G + +K E GVHR+ R+ +A R HTS A Sbjct: 119 GGFTVNVLDLQPAEEAGIKSATLEINGESAYGFLKAEGGVHRLVRISPFDAQARRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V + P+ + +++I +D+R+DT RASG+GGQHVN TDSAVR+TH PTGI+V E+ Sbjct: 179 SVFIYPQVDDSIEIEINDDDLRVDTYRASGAGGQHVNKTDSAVRLTHAPTGIVVQCQQER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQH+NR AMK+L ARLY + ER+ K IG G+ +IR+Y F + Sbjct: 239 SQHKNRATAMKMLLARLYQHALEEKKKERAVLEASKRDIGFGN---QIRSYVFQPYTMVN 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR L + ++ V+ G ID I L Sbjct: 296 DHRTELKITDVQSVMDGAIDPFIEAYLK 323 >gi|242041179|ref|XP_002467984.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor] gi|241921838|gb|EER94982.1| hypothetical protein SORBIDRAFT_01g037550 [Sorghum bicolor] Length = 467 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 157/340 (46%), Gaps = 11/340 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + R ++ + + + + ++ KI +Q +QE + ++ Sbjct: 123 ILERTKQLAVVLERPDLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLARE 182 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ + + E L +D C +E++AG GG+E+ + Sbjct: 183 ENDNELEMESMRALADMRRSAKEK--ELNALLSGDNDSCPCFIEVQAGAGGTESMDWAAM 240 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 + MY +A R + V V+ + G K + G F K E GVHR+ R+ Sbjct: 241 VMNMYRSWAQRRGYTVTVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 300 Query: 192 EASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS A VAV+P A I D+RI+ R+ G GGQH NTT+SA+RI HI Sbjct: 301 DSGKRRHTSFAAVAVIPILGDAASRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHI 360 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERI 306 PTGI +E+SQH N+ AM VL++RL +E R A + + + +I G+ +I Sbjct: 361 PTGISATCQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEISWGN---QI 417 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y R + D R N + + VL+G IDD I L+ Sbjct: 418 RSYVLHPYRMVKDLRTNYEVSDPDSVLEGDIDDFILNYLS 457 >gi|118496781|ref|YP_897831.1| peptide chain release factor 2 [Francisella tularensis subsp. novicida U112] gi|194324538|ref|ZP_03058310.1| peptide chain release factor 2 [Francisella tularensis subsp. novicida FTE] gi|118422687|gb|ABK89077.1| peptide chain release factor 2 [Francisella novicida U112] gi|194321373|gb|EDX18859.1| peptide chain release factor 2 [Francisella tularensis subsp. novicida FTE] Length = 325 Score = 200 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 170/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V + SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADGHGFKVSVDNVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+ D R + + VL G +D I L Sbjct: 292 RVKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|270264900|ref|ZP_06193164.1| peptide chain release factor 2 [Serratia odorifera 4Rx13] gi|270041198|gb|EFA14298.1| peptide chain release factor 2 [Serratia odorifera 4Rx13] Length = 248 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 141/249 (56%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+I+AG+GG+EA + L RMY R+A + +K EV+ SD D G K Sbjct: 1 MFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAESKGFKTEVIEESDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 I G F ++ E+GVHR+ R ++ GR HTS ++V + PE + Sbjct: 61 SATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSVFIYPEVDDDIDIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+PT I+V +++SQH+N+ +A K LRA+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLRAKLYE 180 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ ++ + K IG G +IR+Y RI D R N+ + VL G +D Sbjct: 181 FEMQKKNADKQQMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTNVETRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|15842676|ref|NP_337713.1| peptide chain release factor 2 [Mycobacterium tuberculosis CDC1551] gi|13882995|gb|AAK47527.1| peptide chain release factor 2 [Mycobacterium tuberculosis CDC1551] Length = 371 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 99/347 (28%), Positives = 161/347 (46%), Gaps = 6/347 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L++R ++E S+ D + + +S ++ ++ ++ DL + Sbjct: 24 DVEGLRSRIEKLEHEASDPHLWDDQTRAQRVTSELSHTQGELRRVEELRRRLDDLPVLYE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEI-RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++ + E + R L D++ ++ IR+G GG +AA Sbjct: 84 LAAEEAGAAAADAVAEADAELKSLRADIEATEVRTLLSGEYDEREALVTIRSGAGGVDAA 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A K+ VEV +S ++ G K + + + E G HR+ Sbjct: 144 DWAEMLMRMYIRWAEQHKYPVEVFDTSYAEEAGIKSATFAVHAPFAYGTLSVEQGTHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ + R TS A V VLP +DIP D+R+D R+SG GGQ VNTTDSAVR Sbjct: 204 RISPFDNQSRRQTSFAEVEVLPVVETTDHIDIPEGDVRVDVYRSSGPGGQSVNTTDSAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIP+GI+V +EKSQ QN++ AM+VL+A+L + R E A K GS Sbjct: 264 LTHIPSGIVVTCQNEKSQLQNKIAAMRVLQAKLLERXRLEERAELDAL-KADGGS-SWGN 321 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 ++R+Y + + D R + VL G +D + + + Sbjct: 322 QMRSYVLHPYQMVKDLRTEYEVGNPAAVLDGDLDGFLEAGIRWRNRR 368 >gi|170755895|ref|YP_001779801.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra] gi|169121107|gb|ACA44943.1| peptide chain release factor 2 [Clostridium botulinum B1 str. Okra] Length = 325 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 94/329 (28%), Positives = 173/329 (52%), Gaps = 13/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + + + + + K + ++ L ++ + + D + ++ Sbjct: 1 MQNPNFWNDIKEAQKITSEEKYLKDKLIKYNHLRNTIEDIISLCEMLSEEDDDMKKEIIS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + + E + ++E L D + I+ + +G GG++A + LFRMY R+ Sbjct: 61 EYKNIKEEIDKFKIE------TLLSGEYDRNNVIMTLHSGVGGTDAQDWTDMLFRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++++ + +D G K + I+G V+ +K E G+HR+ R+ A+G+ T Sbjct: 115 AEKEGFTIKIMDLLEAEDAGIKSVTLKITGEFVYGYLKGEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ +LPE + +++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V Sbjct: 175 SFASIEILPELTEDQEIEIKSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIIVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQH N+ AMKVL+++L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQHTNKETAMKVLKSKLVELK-ERSHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR ++ V+ G I+ I L Sbjct: 294 KDHRTGAETSNVDSVMNGDINIFITQYLK 322 >gi|167761288|ref|ZP_02433415.1| hypothetical protein CLOSCI_03693 [Clostridium scindens ATCC 35704] gi|167660954|gb|EDS05084.1| hypothetical protein CLOSCI_03693 [Clostridium scindens ATCC 35704] Length = 312 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 93/314 (29%), Positives = 155/314 (49%), Gaps = 9/314 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + ++ I + L + + S R++ + Sbjct: 1 MKELKHLKELVETIQNLYASYDDINLLIEMGYEDEDPSMAREIEEEIRGFETSYEE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D + I+ I AG GG+E+ + L+RMY R+A + + ++VL D Sbjct: 57 -LRIQTLLSGEYDACNAIVTIHAGAGGTESCDWASMLYRMYSRWAERKGFTIQVLDYLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV 215 D G K + ++G + +K E GVHR+ R+ A+G+ TS A+ V+P+ + Sbjct: 116 DIAGIKTVTFEVNGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCDVVPDIEDEID 175 Query: 216 DIPLED-IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +D ++IDT RASG+GGQHVN T SA+RITH+PTGI+V +E+SQH N+ +AM++L Sbjct: 176 IEIADDDLKIDTYRASGAGGQHVNKTSSAIRITHLPTGIVVQCQNERSQHHNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 + +L ++ + A + S R ++ +IR+Y + DHR N+ + V+ Sbjct: 236 KVKLQLMKEQEQAEKVSDIR-GEVKEIGFGNQIRSYVMQPYTMVKDHRTNVENSNVGAVM 294 Query: 333 QGYIDDIINPLLTA 346 G ID IN L Sbjct: 295 DGSIDMFINAYLKQ 308 >gi|222085647|ref|YP_002544177.1| peptide chain release factor 2 [Agrobacterium radiobacter K84] gi|221723095|gb|ACM26251.1| peptide chain release factor 2 [Agrobacterium radiobacter K84] Length = 345 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 104/337 (30%), Positives = 167/337 (49%), Gaps = 16/337 (4%) Query: 19 IELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 + + + + KL E + IS + +Q+ + +L + + + Sbjct: 4 LNNKSEDPNLWNDATEAQKLMRERQQLDDGISGVRALEQQVADNVELIELGEEEGDADVV 63 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 R+ + + R + D +E+ +G GG+E+ + L RM Sbjct: 64 REAEEALKALKTEAAR-----RQVEAMLSGEADSNDTYVEVHSGAGGTESQDWANMLLRM 118 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+A +++KVE+L D ++ G K + G + +K ESGVHR+ R+ +++ Sbjct: 119 YTRWAERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNA 178 Query: 196 RVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 R HTS +++ + P I +DI D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+ Sbjct: 179 RRHTSFSSIWIYPVVDDSIQIDINEGDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIV 238 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNF 311 V E+SQH+NR +A +LRAR+Y+ E + A A K IG G +IR+Y Sbjct: 239 VQCQQERSQHKNRAKAWDMLRARMYEAELMKREEAANAEAASKTDIGWG---HQIRSYVL 295 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R +T + VL G +++ + L Sbjct: 296 QPYQLVKDLRTGVTSTAPDDVLDGDLNEFMEAALAHR 332 >gi|255987637|ref|YP_001884728.2| peptide chain release factor 2 [Clostridium botulinum B str. Eklund 17B] gi|255961470|gb|ACD21926.2| peptide chain release factor 2 [Clostridium botulinum B str. Eklund 17B] Length = 325 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 104/329 (31%), Positives = 175/329 (53%), Gaps = 13/329 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E + ++T+E I I ++ K + + L ++ D + +S + Sbjct: 1 MQEDGFWNDTKRAEEITKESKRIKDKIQRVESVRSKLDDIEVLKEIMDDDDEESAYEIIN 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I+ + E + +E +L D + IL + G GG++A + L RMY R+ Sbjct: 61 NIKEIEEEIDNYNME------ILLSGEYDKNNAILTLHVGVGGTDANDWTEMLLRMYTRW 114 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + +KVE++ + D+ G K + + G + +K E G+HR+ R+ A+G+ T Sbjct: 115 CEKKNYKVEMIDLLEGDEAGIKSVTLKVIGEYAYGYLKAEKGIHRLVRISPFNANGKRQT 174 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ VLPE E D+DI EDI+IDT RASG+GGQH+N TDSAVRITH+PTG++V Sbjct: 175 SFASMEVLPELTKEQDIDIRSEDIKIDTYRASGAGGQHINKTDSAVRITHLPTGVVVQCQ 234 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ N+ AM +L+A+L +++ +R E+ + ++ +IR+Y F + Sbjct: 235 NERSQFSNKDTAMGMLKAKLIELK-ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPYNLV 293 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR N+ + + V+ G +D +N L Sbjct: 294 KDHRTNVEVSNVTAVMDGDLDLFVNSYLK 322 >gi|170694748|ref|ZP_02885899.1| peptide chain release factor 2 [Burkholderia graminis C4D1M] gi|170140379|gb|EDT08556.1| peptide chain release factor 2 [Burkholderia graminis C4D1M] Length = 280 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 102/286 (35%), Positives = 156/286 (54%), Gaps = 12/286 (4%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D + A + + + ++ + + + D + L+I+AG GG+E Sbjct: 1 MAREEGDDETLVACE-----ADAQALEQRVADMEFRRMFANPADPNNAFLDIQAGAGGTE 55 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L R Y RY + +K EVL +D D G K I G + ++ E+GVHR Sbjct: 56 ACDWAAMLLRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHR 115 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R ++SG HTS ++V V PE I+VDI D+RIDT RASG+GGQH+N TDSA Sbjct: 116 LVRKSPFDSSGGRHTSFSSVFVYPEVDDSIEVDINPADLRIDTYRASGAGGQHINKTDSA 175 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VRITH+P+GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G Sbjct: 176 VRITHMPSGIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQAEQDKLEAGKTDVGWG 235 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + + VL G +D I+ L Sbjct: 236 ---HQIRSYVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 278 >gi|12323033|gb|AAG51510.1|AC058785_13 peptide chain release factor 2, putative [Arabidopsis thaliana] Length = 426 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 100/345 (28%), Positives = 167/345 (48%), Gaps = 17/345 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R + +++S D K++ E+ +++ + + ++++ E D+ + Sbjct: 80 KKLLVRLKVLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLA 139 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N + + + L +D SC +E++AG GG+E+ Sbjct: 140 KEENDSELESETLKALIDMRRVSKE-----KELEALLSADNDPCSCYIEVQAGAGGTESN 194 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + + MY+ +A RK+ V V+ + + G K ++G + K E GVHR+ Sbjct: 195 DWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRATIKVNGEYAYGYAKAEVGVHRLV 254 Query: 187 RVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ ++ R HTS A VAV+P V+I D+RI+ R+ G+GGQH NTTDSAV Sbjct: 255 RISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSDLRIERFRSGGAGGQHANTTDSAV 314 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGD 301 RI HIPTGI +E+SQH N+ AM VL++RL +E R + + + +I G+ Sbjct: 315 RIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQLEMARQTAMNAQHTQSLTEISWGN 374 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IRTY R + D R N + + VL+G +D I L+ Sbjct: 375 ---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDGFILSFLS 416 >gi|170751458|ref|YP_001757718.1| peptide chain release factor 2 [Methylobacterium radiotolerans JCM 2831] gi|170657980|gb|ACB27035.1| peptide chain release factor 2 [Methylobacterium radiotolerans JCM 2831] Length = 321 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ I ++ ++ L + +S IR+ + + Sbjct: 1 MRERQQLDEAVTAIKKLERDLEDGATLIELGEMEGDESSIREGEAA-----ILAVEKEAA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A RK+KVEV+ +D Sbjct: 56 SRQVETLLSGEADGFDTYLEVHAGAGGTESQDWANMLQRMYARWAERRKYKVEVVEMTDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ ++S R HTS A+V V P I+ Sbjct: 116 EEAGIKGATLLIKGHNAYGWLKTESGVHRLVRISPYDSSARRHTSFASVWVYPVIDDRIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D RIDT R+SG+GGQHVNTTDSAVRITH PTGI+V E+SQH+NR A +L Sbjct: 176 IEIKESDCRIDTYRSSGAGGQHVNTTDSAVRITHNPTGIVVACQQERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ A K IG G +IR+Y + + D R + Sbjct: 236 RARLYELELKKREEKANAEAAAKTDIGWG---HQIRSYVLQPYQLVKDLRTGTQSTDPDE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDPFMEASLAQR 309 >gi|262401638|ref|ZP_06078204.1| peptide chain release factor 2 [Vibrio sp. RC586] gi|262352055|gb|EEZ01185.1| peptide chain release factor 2 [Vibrio sp. RC586] Length = 289 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 12/293 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + ++ K ++ + + D C L++ Sbjct: 2 EDVDGLLELAIEAEDQETFDEIGPELEELEAKL-----EQLEFRRMFSGDHDASDCYLDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K EV+ S+ D G K I G + + Sbjct: 57 QAGSGGTEAQDWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLKSATVRIIGDYAYGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS A+ + PE E D++I D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ + Sbjct: 177 HVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 SKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 286 >gi|238763213|ref|ZP_04624178.1| Peptide chain release factor 2 [Yersinia kristensenii ATCC 33638] gi|238698486|gb|EEP91238.1| Peptide chain release factor 2 [Yersinia kristensenii ATCC 33638] Length = 289 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 100/294 (34%), Positives = 158/294 (53%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + + + A + ++ + + D +C L++ Sbjct: 2 EDVTGLLELAIEADDEETFNEAV-----AELDILDGKLGQLEFRRMFSGEYDSANCYLDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ SD D G K I G F + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESDGDVAGLKSATIKIIGEYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ E ++ ++ + Sbjct: 177 HVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFEMQKKNADKQMLED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 NKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 287 >gi|223982761|ref|ZP_03632989.1| hypothetical protein HOLDEFILI_00263 [Holdemania filiformis DSM 12042] gi|223965261|gb|EEF69545.1| hypothetical protein HOLDEFILI_00263 [Holdemania filiformis DSM 12042] Length = 327 Score = 200 bits (507), Expect = 4e-49, Method: Composition-based stats. Identities = 103/330 (31%), Positives = 172/330 (52%), Gaps = 10/330 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS--DSEIRDLAQ 80 M+E D + + + Y Q +Q L + + N D E+++L Sbjct: 1 MNEEHFWDDPKAAQNVIRQCNGMKELEAKYHQMEQSLASLQETVDELNQNFDEELKELLD 60 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 +E + + E ++L D + ILE+ G GG+E+ + L+RMY R+A Sbjct: 61 MEYQDTLNQFEDFEV----MVLLSHPYDKNNAILELHPGAGGTESQDWASMLYRMYCRWA 116 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + +KV +L + ++ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 117 ERKGYKVTLLDYQEGEEAGIKSVSILIEGDMAYGYLKAEKGVHRLVRISPFDSSGRRHTS 176 Query: 201 AATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A++ V+P+ ++ ++ I D+ + TMRASG+GGQH+N TDSAVR+TH PTGI+V + Sbjct: 177 FASLDVMPQFSDEIEITIDERDLDVVTMRASGAGGQHINKTDSAVRMTHKPTGIVVSCQT 236 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 E+SQ QNR R M +L+++LY + + +A R Q + + +IR+Y F + Sbjct: 237 ERSQIQNRERCMNMLKSKLYQRMIEEQEAKLAAIRGEQ-KNIEWGSQIRSYVFCPYTMVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR + ++ V+ G +D I L + Sbjct: 296 DHRTGYEMGSVQNVMDGDLDGFIFSYLKSQ 325 >gi|301760227|ref|XP_002915915.1| PREDICTED: peptide chain release factor 1, mitochondrial-like [Ailuropoda melanoleuca] gi|281349098|gb|EFB24682.1| hypothetical protein PANDA_003948 [Ailuropoda melanoleuca] Length = 445 Score = 199 bits (506), Expect = 4e-49, Method: Composition-based stats. Identities = 132/360 (36%), Positives = 208/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMEDLNKEYRTLDECLQRMSVNEGDRKSLNRRHAELAPLAAIYQEIQEAEQAIEELDS 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I ++I L +E+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIAQKINMLYSELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y++ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSSYKNWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ + RKLQ Sbjct: 316 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQQSTRKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I LL + + I Sbjct: 376 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLCGEKCLDQLIQTLLHSADEEAITE 435 >gi|332290838|ref|YP_004429447.1| hypothetical protein Krodi_0191 [Krokinobacter diaphorus 4H-3-7-5] gi|332168924|gb|AEE18179.1| hypothetical protein Krodi_0191 [Krokinobacter diaphorus 4H-3-7-5] Length = 368 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 98/369 (26%), Positives = 170/369 (46%), Gaps = 28/369 (7%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ I L+ R + E + + + + + Sbjct: 1 MITTDHIKSLQERVDGLRRYLDVDRKRIEIQNEEEKTFDPNFWNDPKEAEAFMKTLRSKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 ++ Y++ + +DL + + Q I ++E + + + Sbjct: 61 KWVTDYEEAQTFVEDLEVLYEFAKEGEAPEENVQDRYDKAAAFIEDIE----FRNMLSEE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D+ SC+L+I AG GG+E+ + L RMY YA + WKV+ L+ + D G K + Sbjct: 117 GDELSCVLQITAGAGGTESCDWAAMLMRMYLMYAEKQGWKVKELNFQEGDVAGIKTVSLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I D I Sbjct: 177 IEGDFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIEINPADYDIV 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SG+GGQ+VN ++ V++TH PTGI + S +SQH NR +A+++LR++LY++E ++ Sbjct: 237 TARSSGAGGQNVNKVETKVQLTHHPTGIQISCSDSRSQHDNRAKALQMLRSQLYELELRK 296 Query: 285 MANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 R+A K I G +IR Y + + D R + + VL G ID + Sbjct: 297 QMEARNAIEADKKAIEWG---SQIRNYVLHPYKLVKDVRTAVETGNTDAVLDGNIDLFLK 353 Query: 342 PLLTAHQAK 350 L + Sbjct: 354 GYLMMMGQE 362 >gi|327395061|dbj|BAK12483.1| peptide chain release factor 2 PrfB [Pantoea ananatis AJ13355] Length = 293 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ Q L + + + + + A + E+ + + D C Sbjct: 3 QGLEDVQGLLDLAVEADDEETFNEAV-----AELDALEGKLGELEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 ++++AG+GG+EA + L RMY R+A + +K E++ S+ + G K + +SG F Sbjct: 58 IDLQAGSGGTEAQDWASMLMRMYLRWAEAKGFKTEIIEESEGEVAGIKSVTIRVSGDYAF 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ + PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITH+PTG + +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHVPTGTVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQM 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 LEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLDRFIEASLKA 291 >gi|170114318|ref|XP_001888356.1| predicted protein [Laccaria bicolor S238N-H82] gi|164636668|gb|EDR00961.1| predicted protein [Laccaria bicolor S238N-H82] Length = 338 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 141/341 (41%), Positives = 201/341 (58%), Gaps = 11/341 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS V +L +E A+ + + Q +Q + ++ D + Sbjct: 1 MSSPEDVLRLKQL-KESKALQ---TAWDEWTQTRQLLDNTAPLLDDP-DPTMRSLAVDEY 55 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + LE+ LL+P T S ++E+++G GGSE++LF+GDL RMY+R A + Sbjct: 56 TSLTSTLTQFLESTFPSLLVPPSTTSHLSALMEMKSGVGGSESSLFLGDLLRMYQRLANV 115 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +WK +V++ +DND GG K+ + I G G + ++FESGVHRVQRVPATE+SGRVHTS Sbjct: 116 NRWKAQVVAQNDNDGGGTKDAIIEIKGDGAYDALRFESGVHRVQRVPATESSGRVHTSTV 175 Query: 203 TVAVLP----EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-S 257 ++ VLP + + + DI+++ MRA G+GGQHVN T+SAVR+THIPTGI V+ Sbjct: 176 SIVVLPLVEETDTQAEELFSMSDIKLEVMRARGAGGQHVNKTESAVRLTHIPTGITVSMQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRIT 317 E+SQHQNR RA +VLR+RL D + R ER R+ + DRSE+IRTYNF Q R+T Sbjct: 236 DERSQHQNRRRAFQVLRSRLLDKKLTREMEERRDTRRNLVRGADRSEKIRTYNFVQERVT 295 Query: 318 DHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 DHRI LTL L VL+G I D I+ + H ++ + Sbjct: 296 DHRIGLTLMNLSSVLEGDGIQDFIDAVKKDHADSILEDMLD 336 >gi|114704660|ref|ZP_01437568.1| peptide chain release factor 2 protein [Fulvimarina pelagi HTCC2506] gi|114539445|gb|EAU42565.1| peptide chain release factor 2 protein [Fulvimarina pelagi HTCC2506] Length = 321 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 153/327 (46%), Gaps = 13/327 (3%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I + +E +L + + + + + Sbjct: 1 MRERQHLETNITAIRELESAVEENVELIAMGEEEGDGEIVSEAEATLKTLQTDAAK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D +E+ +G GG+E+ + L RMY R+A +KVEVL Sbjct: 57 -RQIETLLSGEADSNDTYMEVHSGAGGTESQDWASMLQRMYIRWAERANFKVEVLEEQGG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + K ESGVHR+ R+ ++ R HTS A+V V P ID Sbjct: 116 EEAGIKSTTLLIKGHNAYGWAKTESGVHRLVRISPYDSQARRHTSFASVWVYPVVDDTID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +++ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V E+SQH+NR A +L Sbjct: 176 IEVNESDVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVACQQERSQHKNRATAWNML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +ARLY+ E ++ A K IG G +IR+Y + + D R + + Sbjct: 236 KARLYEAELEKREAEANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGIESTSPQD 292 Query: 331 VLQGYIDDIINPLLTAHQAKMIGSASE 357 VL G +D+ + L + + Sbjct: 293 VLDGELDEFMEAALAHRVEGKKAAVED 319 >gi|149177843|ref|ZP_01856442.1| peptide chain release factor 2 (RF-2) [Planctomyces maris DSM 8797] gi|148843333|gb|EDL57697.1| peptide chain release factor 2 (RF-2) [Planctomyces maris DSM 8797] Length = 331 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 94/337 (27%), Positives = 168/337 (49%), Gaps = 16/337 (4%) Query: 23 MSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D K E I ++ ++ + ++ + L I + S+ I +L+ Sbjct: 1 MGAAGFWDNQEKAQGLVNEMQQIQLVVKPLTQLVEGAEDLEVLIEFIEEEGSEDSIPELS 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 A + + + + + +D + L I+AG GG++++ + L RMY R+ Sbjct: 61 -----ATAERLESILEHLELQAMMSAPEDGSAAYLSIQAGEGGTDSSDWAEMLLRMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 R + VE+L SD ++ G + I G + +K E+G HR+ R+ +++GR HT Sbjct: 116 CERRGFNVELLDRSDAEEAGIRSATIRIEGDYAYGYLKGETGNHRLIRISPFDSAGRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 S A V V P+ E+ +D+R DT RASG+GGQH+N TDSA+R+TH+ + ++V Sbjct: 176 SFAAVDVSPDMGEVAEIEISWDQDVREDTYRASGAGGQHINKTDSAIRLTHLESNVVVQC 235 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG 314 + +SQH+NR A K+L+++L+ +E+++ E +A R K +IG G + +R Y Sbjct: 236 QNNRSQHKNRAEARKMLKSKLFQIEQEKRDAELAAKRGGKSKIGFG--GQTVRNYVLHPD 293 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + + D R +L G +D + L + Sbjct: 294 QYVKDARTGFKAGNPGPILDGDLDGFLEAFLRWGMTE 330 >gi|169347339|ref|ZP_02866277.1| hypothetical protein CLOSPI_00054 [Clostridium spiroforme DSM 1552] gi|169293956|gb|EDS76089.1| hypothetical protein CLOSPI_00054 [Clostridium spiroforme DSM 1552] Length = 367 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 170/344 (49%), Gaps = 12/344 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI---SPIISKISIYDQKKQEEQDLHT 64 I + + + + D K Y + I+ + + + + Sbjct: 25 DIESYRREIEGLTIVTEQDNFWDDTNKAKITYDKLNKMKKIVDQYDVLATTLNNLDETYE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + L + E + ++L D+ + I+EI G GG+E Sbjct: 85 LVKSSEEVEFLEILESDYLKFQEDLDK-----FEKMMLLSGEHDNLNAIVEIHPGAGGTE 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + LFRMY+RYA+ + WKVEVL D D G K + I G V+ +K E GVHR Sbjct: 140 SQDWAEMLFRMYQRYASRKDWKVEVLDYLDGDVAGIKSVTMLIKGEDVYGHLKAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ R HTS A+V V+PE ++DI ED++IDT RASG+GGQH+N TDSA Sbjct: 200 LVRLSPFDSAKRRHTSFASVDVMPEFNNEIEIDIKNEDLKIDTYRASGAGGQHINKTDSA 259 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITHIPT I+V S++SQ +NR +AM +L+++LY + ++ A+E + Q Sbjct: 260 VRITHIPTNIVVTCQSQRSQIKNREQAMIMLKSKLYQLMLEKQASELKELKGEQ-KEIAW 318 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + D+R N + VL G +D I L Sbjct: 319 GSQIRSYVLHPYSLVKDNRSNYESSNPKAVLDGDLDGFIYAYLK 362 >gi|182416046|ref|YP_001821112.1| peptide chain release factor 2 [Opitutus terrae PB90-1] gi|177843260|gb|ACB77512.1| peptide chain release factor 2 [Opitutus terrae PB90-1] Length = 341 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 102/330 (30%), Positives = 161/330 (48%), Gaps = 9/330 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D+ + + A ++ + + ++ +DL ++ + SE + + Sbjct: 1 MGAPTFWDSNERAQKHIAKLNGLKKAVLPVVAFHKKVEDLDVMVELVEAASEGERESYAQ 60 Query: 83 VLAIEKEIRELE-NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 L E + + D + IL I++G GG+E+ + LFRMY R+A Sbjct: 61 ELDSNVTAMVEELDALEIASFLTGQFDRNNAILSIQSGAGGTESNDWADMLFRMYNRWAE 120 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 R + +EV D G + I G + K E GVHR+ R+ +A+ R HTS Sbjct: 121 RRGFSIEVQDVQAGDQAGITKATLLIKGENAYGYAKAERGVHRLVRISPFDANKRRHTSF 180 Query: 202 ATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSE 259 V V+ ++DV+I D+RID R+SG GGQ VNTTDSAVRITH+ +GI +V +E Sbjct: 181 CAVDVVAEITEDVDVEINENDLRIDVYRSSGKGGQGVNTTDSAVRITHLSSGIVVVCQNE 240 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-I 316 +SQ +N+ AM VL+ARLY+ ++ E K +IG G +IR+Y + + Sbjct: 241 RSQLKNKAAAMNVLKARLYEKKQDEQRAEMDKFYGEKGEIGWGA---QIRSYVLQPYQMV 297 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R ++ + VL G +D +N L A Sbjct: 298 KDLRTGVSTSDTQGVLDGDLDRFVNAWLRA 327 >gi|290511305|ref|ZP_06550674.1| peptide chain release factor 2 [Klebsiella sp. 1_1_55] gi|289776298|gb|EFD84297.1| peptide chain release factor 2 [Klebsiella sp. 1_1_55] Length = 299 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 101/305 (33%), Positives = 163/305 (53%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + Q ++ L + + + + A + E ++ + + Sbjct: 1 MDTLDQMSQGLEDVAGLLELAVEAEDEETFNEAV-----AELDGLEEKLAQLEFRRMFSG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D C L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + Sbjct: 56 EYDSADCYLDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTI 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 I G + ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RI Sbjct: 116 KIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D RASG+GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E + Sbjct: 176 DVYRASGAGGQHVNRTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQ 235 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 236 KKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIE 292 Query: 342 PLLTA 346 L A Sbjct: 293 ASLKA 297 >gi|27904871|ref|NP_777997.1| peptide chain release factor 2 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|27904269|gb|AAO27102.1| peptide chain release factor 2 [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 337 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 117/341 (34%), Positives = 182/341 (53%), Gaps = 15/341 (4%) Query: 12 LKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 KNR EI + + + K+ +E + ++++I+ D QE D+ + + Sbjct: 2 KKNRLLEINMELKLPETWKHPSLIKKINKEKNQLISVVTQITKIDNDVQELIDILNL-EN 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N+ + I D E IEK I ELE +L D SC ++I++G+GG EA + Sbjct: 61 SNNINSILDNVLYEFKNIEKSIHELEKCSMFL----GKYDYLSCYVDIQSGSGGVEAQDW 116 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+A +K+K++++ + + G K + G+ F + E+G+HR+ R Sbjct: 117 ASMLLRMYVRWAESKKFKIDIIEQTYGEVVGIKSATIEVLGKYAFGWFRTETGIHRLVRK 176 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A R HTS ++V V P I+VDI D++ID RASG+GGQHVN T+SAVRI Sbjct: 177 SPFNAHHRRHTSFSSVYVYPILDDAINVDINTRDLKIDVYRASGAGGQHVNKTESAVRIR 236 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV--ERKRMANERSANRKLQIGSGDRSE 304 H+PTGI+V +++SQH+N+ +AMK L+A+LY+ K+ + N KL IG G Sbjct: 237 HLPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYEQLINEKKCQQKILENNKLNIGWG---H 293 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + ++ VL G +D + L Sbjct: 294 QIRSYTLDNSRIKDLRTGVESKNIQSVLDGGLDLFVECSLR 334 >gi|78042486|ref|NP_001030185.1| peptide chain release factor 1, mitochondrial precursor [Bos taurus] gi|118573310|sp|Q3MHI7|RF1M_BOVIN RecName: Full=Peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|75773697|gb|AAI05225.1| Mitochondrial translational release factor 1 [Bos taurus] gi|296481791|gb|DAA23906.1| peptide chain release factor 1, mitochondrial precursor [Bos taurus] Length = 447 Score = 199 bits (506), Expect = 5e-49, Method: Composition-based stats. Identities = 132/360 (36%), Positives = 208/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + + + LT +A ++P+ + +Q ++L + Sbjct: 78 QKYMEDLNKEYQTLDHCLHHISASEGDRRSLTRRHAELAPLAVIYKEIQEAEQAIEELES 137 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I ++I L +E+ LLPK+ D ILE+ +G T Sbjct: 138 MCKSLNKQDEKQLQELALEERQTIAQKINMLYSELFQSLLPKEKYDKNDVILEVTSGRTT 197 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y++ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 198 GGDICQQFTREIFDMYQNYSSYKHWRFELLNYTPADYGGLHHAAARISGDNVYKHLKYEG 257 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP E+DV + +D+RIDT RA G+GGQHV Sbjct: 258 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPHPDEVDVKVDPKDLRIDTFRAKGAGGQHV 317 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ + RKLQ Sbjct: 318 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQRSARKLQ 377 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I LL + + I Sbjct: 378 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRNIKEFLCGEKCLDQLIQRLLQSADEEAITE 437 >gi|319954923|ref|YP_004166190.1| bacterial peptide chain release factor 2 (brf-2) [Cellulophaga algicola DSM 14237] gi|319423583|gb|ADV50692.1| bacterial peptide chain release factor 2 (bRF-2) [Cellulophaga algicola DSM 14237] Length = 366 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 91/342 (26%), Positives = 159/342 (46%), Gaps = 11/342 (3%) Query: 11 DLKNRFAEIE---LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 D+ + EIE + D K E I + Y + DL +I Sbjct: 23 DVDAKLIEIENEQEKTLAPDFWDNPQKAQEHMKYIQSKKKWVDDYKTSETLANDLEVLIE 82 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + I LE + + + D+ I++I AG GG+E+ Sbjct: 83 FQKEGAITEEEVEKQYTKTLDTIENLE----FKNMLSEEGDELPAIIQITAGAGGTESCD 138 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY ++ + +K++ L+ + D G K + I G F +K E+GVHR+ R Sbjct: 139 WAAMLMRMYMMWSEKKGFKIKELNYQEGDVTGIKTVTLEIDGEFSFGWLKGENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P + I DI I T R+SG+GGQ+VN ++ V++ Sbjct: 199 ISPFDSNAKRHTSFASVYVYPLVDDSIEIAINPADIDITTARSSGAGGQNVNKVETKVQL 258 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH P+GI + S +SQH+NR A+K+L+++LY++E ++ R ++ + + Sbjct: 259 THKPSGIQISCSDSRSQHENRATALKMLKSQLYEIELRKKMEARQEIESSKMK-IEWGSQ 317 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR Y + + D R ++ V+ G ID + L Sbjct: 318 IRNYVMHPYKLVKDVRTATETGNVDAVMDGDIDKFLKAFLMM 359 >gi|254785320|ref|YP_003072749.1| peptide chain release factor 2 [Teredinibacter turnerae T7901] gi|242667502|gb|ACS93539.1| peptide chain release factor 2 [Teredinibacter turnerae T7901] Length = 300 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 102/304 (33%), Positives = 154/304 (50%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I D + +DL + + N + + D+ + + + + + Sbjct: 2 VETIENLDHGVTDCRDLIDLAVEENDEDSLEDVQ-----SEIDSLEAQLAILEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + L+I++G+GG+EA + + RMY R+ + +K + +S + G K Sbjct: 57 EMDANNAFLDIQSGSGGTEAQDWAEMILRMYLRWGEDKGFKTTLEEASAGEVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G F ++ E+GVHR+ R ++ R HTS A+V V PE + D+R+ Sbjct: 117 RFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFASVFVSPEIDDDIEIDINPADLRV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH PTGI+V SE+SQH NR +AMK+LRAR+Y+ E Sbjct: 177 DTYRASGAGGQHVNKTDSAVRITHEPTGIVVQCQSERSQHSNRDKAMKMLRARMYEHEIL 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K IG G +IR+Y RI D R + + VL G +DD I Sbjct: 237 KRNAEKQALEDSKSDIGWG---SQIRSYVLDDQRIKDLRTGIQTSNCQAVLDGKLDDFIE 293 Query: 342 PLLT 345 L Sbjct: 294 ASLK 297 >gi|320103729|ref|YP_004179320.1| peptide chain release factor 2 (bRF-2) [Isosphaera pallida ATCC 43644] gi|319751011|gb|ADV62771.1| bacterial peptide chain release factor 2 (bRF-2) [Isosphaera pallida ATCC 43644] Length = 334 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 99/329 (30%), Positives = 159/329 (48%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ + + A I + + + Y+ ++ +DL ++ D D E Sbjct: 1 MNAPDFWNHQDRAKATIAEIKTLNAVLKPYEALVKQAEDLQALVELA--DEAGDDSLDDE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + ++ RE ++ + +D + LEI G GG+EA + L RMY +A Sbjct: 59 IDQATQKAREAFDKFELQSMLSGMNDHCNAFLEIHPGEGGTEACDWSEMLLRMYMMWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +KVE++S D G + ISG F +K E+GVHR+ R+ +A+GR TS A Sbjct: 119 KGYKVELISREDGGVAGIQSAQLKISGDYAFGYLKGEAGVHRLVRISPFDAAGRRQTSFA 178 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V PE + + D++ D R G GGQH N T+S VR TH+PTG++ + SE+ Sbjct: 179 SVDVTPEIDDTIEIEIRDCDLKRDVFRCGGPGGQHQNKTESGVRYTHLPTGVVAESRSER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQ QN A+K+L+A+L +E ++ E ++ + K +IG G +IR+Y + Sbjct: 239 SQFQNDDLALKLLKAKLIRLEEEKREAESIKAYDDKSKIGFG---SQIRSYVLQPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R VL G +D IN L Sbjct: 296 DLRTGYETGNPRAVLDGDLDGFINAYLRM 324 >gi|241765770|ref|ZP_04763713.1| peptide chain release factor 2 [Acidovorax delafieldii 2AN] gi|241364339|gb|EER59478.1| peptide chain release factor 2 [Acidovorax delafieldii 2AN] Length = 300 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 154/305 (50%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + ++ + +L+ + + D + E + EI +LE + Sbjct: 2 VLTLDKLTRELADNAELYEMSKEE-GDEAGLLTIEAETAKLRPEIEQLEFRRMFSNEADP 60 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 + C ++I+AG GG+EA + L R Y +YA + +K V + D G K Sbjct: 61 LN----CFVDIQAGAGGTEACDWASMLLRQYLKYAERKGFKTTVEEETAGDVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + ++ E+GVHR+ R ++SG HTS A++ V PE + +DI D+R Sbjct: 117 KVEGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFASLFVYPEIDDSIQIDINPADVRT 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A + LR+RLYD E + Sbjct: 177 DTYRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHGNRDIAWQRLRSRLYDHEMR 236 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K +G G +IR+Y RI D R + + + VL G +D I Sbjct: 237 KRQEEQQKLEDTKTDVGWG---HQIRSYVLDNSRIKDLRTGVEISATQKVLDGDLDAFIE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|56707356|ref|YP_169252.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis SCHU S4] gi|110669826|ref|YP_666383.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis FSC198] gi|224456424|ref|ZP_03664897.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis MA00-2987] gi|254370940|ref|ZP_04986945.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis FSC033] gi|254874190|ref|ZP_05246900.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis MA00-2987] gi|54112809|gb|AAV29038.1| NT02FT0149 [synthetic construct] gi|56603848|emb|CAG44824.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis SCHU S4] gi|110320159|emb|CAL08207.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis FSC198] gi|151569183|gb|EDN34837.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis FSC033] gi|254840189|gb|EET18625.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis MA00-2987] Length = 325 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 168/331 (50%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELGEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPTDLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|83644616|ref|YP_433051.1| peptide chain release factor 2 [Hahella chejuensis KCTC 2396] gi|83632659|gb|ABC28626.1| peptide chain release factor 2 [Hahella chejuensis KCTC 2396] Length = 301 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 102/306 (33%), Positives = 165/306 (53%), Gaps = 12/306 (3%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 ++ + + DL + + D++ + E+ +I ++ LE + + Sbjct: 2 VVKTVDDVTGGLTDCSDLLDMAVEE-QDADAVTEVETELESIRAQVETLE----FRRMFA 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D + L+I+AG+GG+EA + L RMY R+ R +K +++ S + G K Sbjct: 57 GEMDPNNAYLDIQAGSGGTEAQDWASILLRMYLRWGERRGFKTDLIEESPGEVAGIKSAT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIR 223 G + ++ E+GVHR+ R ++ R HTS A+V V PE +I++DI D+R Sbjct: 117 IHFQGEYAYGWLRTETGVHRLVRKSPFDSGNRRHTSFASVFVSPEVDDDIEIDINPADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ID RASG+GGQHVN T+SAVRITH+P+GI+ +++SQH+N+ +AMK L+A+LY++E Sbjct: 177 IDVYRASGAGGQHVNRTESAVRITHMPSGIVTQCQNDRSQHKNKDQAMKQLKAKLYELEI 236 Query: 283 KRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 ++ E + K IG G +IR+Y Q RI D R ++ + VL G ID+ I Sbjct: 237 QKRNAEAQQLEDSKSDIGWG---SQIRSYVLDQSRIKDLRTSIENSNCQAVLDGDIDEFI 293 Query: 341 NPLLTA 346 L Sbjct: 294 EASLKQ 299 >gi|88706910|ref|ZP_01104609.1| peptide chain release factor 2 [Congregibacter litoralis KT71] gi|88698832|gb|EAQ95952.1| peptide chain release factor 2 [Congregibacter litoralis KT71] Length = 299 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 103/304 (33%), Positives = 161/304 (52%), Gaps = 12/304 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 +S I D + DL + + + ++ + +L Q ++ + + + + Sbjct: 1 MSSIDALDTGASDTLDLIEMAAEEDDEAAVAELEQEIQGLLKVLEK-----LEFRRMFNG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + L+I++G+GG+EA + L RMY R+ + + E++ +S D G K Sbjct: 56 EMDPNNAFLDIQSGSGGTEAQDWAEILLRMYLRWGEAKGFSTELIEASGGDVAGIKSATI 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRI 224 +G F ++ E+GVHR+ R ++ R HTS A+V V I+++I D+R+ Sbjct: 116 KFTGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFASVFVAPEIDDNIEIEINPADLRV 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVR+TH P+GI+V +E+SQHQNR AMK+LR +LY++E Sbjct: 176 DTYRASGAGGQHVNKTDSAVRLTHNPSGIVVQCQTERSQHQNRDNAMKLLRGKLYEMEIL 235 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E+ + K IG G +IR+Y RI D R N+ + VL G ID I Sbjct: 236 KRNEEKQIMEDNKADIGWG---SQIRSYVLDASRIKDLRTNVETSNTQAVLDGDIDQFIE 292 Query: 342 PLLT 345 L Sbjct: 293 ASLK 296 >gi|227877191|ref|ZP_03995265.1| peptide chain release factor RF2 [Lactobacillus crispatus JV-V01] gi|256848945|ref|ZP_05554379.1| peptide chain release factor 2 [Lactobacillus crispatus MV-1A-US] gi|262045712|ref|ZP_06018676.1| peptide chain release factor 2 [Lactobacillus crispatus MV-3A-US] gi|293380190|ref|ZP_06626272.1| peptide chain release factor 2 [Lactobacillus crispatus 214-1] gi|295692545|ref|YP_003601155.1| peptide chain release factor 2 [Lactobacillus crispatus ST1] gi|227863245|gb|EEJ70690.1| peptide chain release factor RF2 [Lactobacillus crispatus JV-V01] gi|256714484|gb|EEU29471.1| peptide chain release factor 2 [Lactobacillus crispatus MV-1A-US] gi|260573671|gb|EEX30227.1| peptide chain release factor 2 [Lactobacillus crispatus MV-3A-US] gi|290923234|gb|EFE00155.1| peptide chain release factor 2 [Lactobacillus crispatus 214-1] gi|295030651|emb|CBL50130.1| Peptide chain release factor 2 [Lactobacillus crispatus ST1] Length = 332 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 98/332 (29%), Positives = 164/332 (49%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---LHTVIGDHNSDSEIRDLA 79 M++ + K + + + + K + + + +D ++ + +++ Sbjct: 1 MAQPDFWNNQEKAQKLISETNRLKEKRDSFLKLQTSYEDETTAVELLREEPDPDLQKEVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E + LL D + ++EI G GG+EA + L RMY+RY Sbjct: 61 ADLATLQEDF-----HNYELDLLLSGKYDSHNALMEIHPGAGGTEAMDWGQMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K E+ ++ G K + A I G+ + +K E+GVHR+ R+ +A+ R HT Sbjct: 116 CDTAGFKFEINDYEPGEEAGLKSVSARIVGKNAYGMLKSENGVHRLVRISPFDAAKRRHT 175 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A+V V+PE I +DI +D+R+D R+SG+GGQH+N T SAVRITH+PTGI+ + Sbjct: 176 SFASVEVIPEVDDSIQIDIDPKDLRVDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +++SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F Sbjct: 236 AQRSQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYN 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R + V+ G + I L Sbjct: 293 LVKDLRTGHETADAQGVMDGKLQPFIYSYLQW 324 >gi|83858490|ref|ZP_00952012.1| peptide chain release factor 2 [Oceanicaulis alexandrii HTCC2633] gi|83853313|gb|EAP91165.1| peptide chain release factor 2 [Oceanicaulis alexandrii HTCC2633] Length = 316 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 101/317 (31%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++++ + +L + D +D + + + Sbjct: 1 MRERNRLDQSMTEVQEIVADLADTLELAEMAEMEGDDDLYQDATEALKALRARAGK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LEI G GG+EA + L RMY R+A +KVEV+ + Sbjct: 57 -AELQALLSGEADGNDSYLEIHPGAGGTEAQDWASMLARMYTRWAEKSGFKVEVIEAQAG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I + G + +K E+GVHR+ R+ ++SGR HTS A+V P I+ Sbjct: 116 EEAGLKSITILVKGENAYGWLKTEAGVHRLVRISPYDSSGRRHTSFASVWTYPLVDDTIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I +D+R+DT RASG+GGQH+N TDSAVR+TH PTGI+V +++SQH+NR A +L Sbjct: 176 IEIEDKDVRVDTYRASGAGGQHINKTDSAVRLTHEPTGIVVACQTDRSQHKNRANAWTML 235 Query: 274 RARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E ++ + A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYELELQKREEAAQADAESKTDIGWG---HQIRSYVLQPYQMVKDLRTQVETSDTQG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L Sbjct: 293 VLDGDLDDFMAAALAQR 309 >gi|308233692|ref|ZP_07664429.1| peptide chain release factor 2 [Atopobium vaginae DSM 15829] gi|328943371|ref|ZP_08240836.1| peptide chain release factor RF2 [Atopobium vaginae DSM 15829] gi|327491340|gb|EGF23114.1| peptide chain release factor RF2 [Atopobium vaginae DSM 15829] Length = 375 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 109/352 (30%), Positives = 173/352 (49%), Gaps = 16/352 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ---EEQDLHTV 65 I +L++ ++ ++ E+ + TE A + + K++ YD + + Q + Sbjct: 30 INELRSHVDKLTVQAGETTFWNDAAHATEVMAQLGALKEKLNQYDSAYKLLLDVQAAFEL 89 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ A+ + + LE D D + I+ I G GG EA Sbjct: 90 ADTSSQDDEMLIEAKRLANKLTNVLDNLELN----TWFNDEFDTGAAIVTITPGQGGLEA 145 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + LF+MY Y + W V++ + + G T++G+ + ++ E GVHR+ Sbjct: 146 QDWCDMLFKMYLHYCERKSWTVDINDAPVGEVIGIDRATFTVTGKNAYGMLRAEQGVHRL 205 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ T+A R T+ A V VLP I+V I +DIRID ASG GGQ VNTTDSAV Sbjct: 206 VRISPTDAKKRRQTTFAGVEVLPVLPQTIEVQIDTQDIRIDVYHASGPGGQGVNTTDSAV 265 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTGI+V +E+SQ QN+ AM++LR++LY++E++R E R K I G+ Sbjct: 266 RITHIPTGIVVTCQNERSQLQNKAAAMQILRSKLYELEKQRREEELDDLRGPKHDISWGN 325 Query: 302 RSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAKM 351 +IR Y + + D R + ++ VL +G +D I + Sbjct: 326 ---QIRNYILYPFQLVKDTRTQVETGNVDAVLQEGDLDQFIIAYHRWASERR 374 >gi|15616167|ref|NP_244472.1| peptide chain release factor 2 in translation [Bacillus halodurans C-125] gi|10176229|dbj|BAB07324.1| peptide chain release factor 2 in translation [Bacillus halodurans C-125] Length = 288 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 104/290 (35%), Positives = 158/290 (54%), Gaps = 13/290 (4%) Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + ++L Q +++ LL + D + ILE+ G GG Sbjct: 5 YELCKEETDADLQQELEQGLKGLVKELNE-----FELQLLLNEPYDKNNAILELHPGAGG 59 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY R+A + +KVE L D+ G K + I G + +K E GV Sbjct: 60 TESQDWASMLLRMYTRWAENKGYKVETLDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGV 119 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ ++SGR HTS + V+PE ++++I ED++IDT R+SG+GGQHVNTTD Sbjct: 120 HRLVRISPFDSSGRRHTSFVSCEVMPELDDSVEIEISTEDLKIDTYRSSGAGGQHVNTTD 179 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SAVRITH+PT +V SE+SQ +NR RAMK+L+A+L ++ + E + R Q IG Sbjct: 180 SAVRITHLPTNTVVTCQSERSQIKNRERAMKMLQAKLLQLKLEEQQKELAEIRGEQKEIG 239 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 G +IR+Y F + DHR N+ + V+ G ID I+ L + Sbjct: 240 WG---SQIRSYVFHPYSMVKDHRTNVEVGNTNAVMDGEIDSFIDAYLRWN 286 >gi|46396627|sp|Q89AC4|RF2_BUCBP RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 366 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 117/343 (34%), Positives = 182/343 (53%), Gaps = 15/343 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 KNR EI + + + K+ +E + ++++I+ D QE D+ + Sbjct: 29 DIKKNRLLEINMELKLPETWKHPSLIKKINKEKNQLISVVTQITKIDNDVQELIDILNL- 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + N+ + I D E IEK I ELE +L D SC ++I++G+GG EA Sbjct: 88 ENSNNINSILDNVLYEFKNIEKSIHELEKCSMFL----GKYDYLSCYVDIQSGSGGVEAQ 143 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +K+K++++ + + G K + G+ F + E+G+HR+ Sbjct: 144 DWASMLLRMYVRWAESKKFKIDIIEQTYGEVVGIKSATIEVLGKYAFGWFRTETGIHRLV 203 Query: 187 RVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R A R HTS ++V V P I+VDI D++ID RASG+GGQHVN T+SAVR Sbjct: 204 RKSPFNAHHRRHTSFSSVYVYPILDDAINVDINTRDLKIDVYRASGAGGQHVNKTESAVR 263 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV--ERKRMANERSANRKLQIGSGDR 302 I H+PTGI+V +++SQH+N+ +AMK L+A+LY+ K+ + N KL IG G Sbjct: 264 IRHLPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYEQLINEKKCQQKILENNKLNIGWG-- 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + ++ VL G +D + L Sbjct: 322 -HQIRSYTLDNSRIKDLRTGVESKNIQSVLDGGLDLFVECSLR 363 >gi|291550769|emb|CBL27031.1| bacterial peptide chain release factor 2 (bRF-2) [Ruminococcus torques L2-14] Length = 320 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 96/316 (30%), Positives = 167/316 (52%), Gaps = 5/316 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + + D+ + +D+ +I + E ++ A+ + E + Sbjct: 1 MKELKGLQDSVKEIDKLFTDYEDMLLLIEMSEGEDEEQEAAEEIEEELGTFEEVFEK-LR 59 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + I+ + AG GG+EA + G L+RMY R+A + ++VE+L + D Sbjct: 60 ISTLLIGPYDADNAIVTLHAGAGGTEAMDWTGMLYRMYSRWAEKKGYEVEMLDYLEGDVA 119 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDI 217 G K + + G + ++ E GVHR+ R+ A+G+ TS A+ V +ID++I Sbjct: 120 GIKGVTFEVKGENAYGYLRSEKGVHRLVRISPFNANGKRQTSFASCDVIPDIEEDIDIEI 179 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +DIR+DT R+SG+GGQH+N T SA+RITH+PTGI+V +E+SQH N+ +AM++L+++ Sbjct: 180 NDDDIRVDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNERSQHMNKDKAMQMLKSK 239 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY 335 LY ++++ A + S R ++ + +IR+Y + DHR N + + V+ G Sbjct: 240 LYVLKQQEQAEKMSDIR-GEVRDINFGNQIRSYVMQPYTLVKDHRTNAEISNVGAVMDGN 298 Query: 336 IDDIINPLLTAHQAKM 351 ID IN L+ Sbjct: 299 IDPFINAYLSMDAEAQ 314 >gi|333029659|ref|ZP_08457720.1| peptide chain release factor RF-2 [Bacteroides coprosuis DSM 18011] gi|332740256|gb|EGJ70738.1| peptide chain release factor RF-2 [Bacteroides coprosuis DSM 18011] Length = 370 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 153/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R E +LR D + + I Sbjct: 1 MITSEQLKDIKERTLALRRYLDIDSKKIELEEEQLRTQAPDFWDDPKVAQSQMKLVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y+ ++L + + + I LE + + Sbjct: 61 DWIKGYENSVALTEELELAFDFYKDELVSEEEVDAAYNKALVCIENLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D CIL+I +G GG+E+ + L R+Y R+A +K + + + D+ G K Sbjct: 117 ADQLGCILKINSGAGGTESQDWASMLMRLYLRWAEDHNYKATLSNLQEGDEAGIKTCTIQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED-IRID 225 + G + +K E+GVHR+ RV A G+ TS A++ V P E I D Sbjct: 177 VEGEYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASIFVTPLVDESIEVTIDPSAITWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 R+ G+GGQ+VN ++ VR+ + ++ + +SQ NR AM++LR+ Sbjct: 237 LFRSGGAGGQNVNKVETGVRLRYQYKDPDTGQEEEILVENTESRSQLDNRENAMRLLRSI 296 Query: 277 LYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LY+ E ++ E + + K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYEKELQKRLAELRKIEDSKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID+ I L Sbjct: 354 DIDEFIKAYLME 365 >gi|7404432|sp|O51101|RF2_BORBU RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 359 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 107/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + + A S + +KI +++ + +DL + Sbjct: 23 NEIQAKIEKYEKEINQKNFWNDPKRAQKVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 82 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 83 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 137 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 138 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 196 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 197 PFDAAKKRHTSFASVFVDPVIDDKIEITIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 256 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 257 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 313 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 314 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 355 >gi|150396182|ref|YP_001326649.1| peptide chain release factor 2 [Sinorhizobium medicae WSM419] gi|150027697|gb|ABR59814.1| peptide chain release factor 2 [Sinorhizobium medicae WSM419] Length = 342 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 164/336 (48%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + IS + ++Q+ + +L + + + + Sbjct: 2 NNKAEDPSLWNDAAEAQKLMRERQQLDDGISGLRRFEQQLNDNIELIELGEEEGDSAIVS 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + + + D +E+ +G GG+E+ + L RMY Sbjct: 62 EAEEALRQLRNDAAK-----KQVEAMLSGEADQNDTYVEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + +KVE++ D ++ G K + G + +K ESGVHR+ R+ +++ R Sbjct: 117 TRWAERQGYKVELMEIQDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS +++ V P E VDI D RIDT R+SG+GGQHVNTTDSAVRITH+P+GI+V Sbjct: 177 RHTSFSSIWVYPVVDESIQVDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHMPSGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRARLY+ E K+ A A K +IG G +IR+Y Sbjct: 237 QCQQERSQHKNRAKAWDMLRARLYEAELKKREEAANAEAASKTEIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G + + + L Sbjct: 294 PYQLVKDLRTGVESTSPGDVLDGELSEFMEAALAHR 329 >gi|58336996|ref|YP_193581.1| peptide chain release factor 2 [Lactobacillus acidophilus NCFM] gi|227903556|ref|ZP_04021361.1| peptide chain release factor RF2 [Lactobacillus acidophilus ATCC 4796] gi|58254313|gb|AAV42550.1| peptide chain release factor 2 [Lactobacillus acidophilus NCFM] gi|227868443|gb|EEJ75864.1| peptide chain release factor RF2 [Lactobacillus acidophilus ATCC 4796] Length = 332 Score = 199 bits (505), Expect = 6e-49, Method: Composition-based stats. Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D K + + + + K + + ++ + + + E Q E Sbjct: 1 MAQPDFWDNQEKAQKLISENNVLKEKRDSFLKLSEDYE--NELTALDLLREEPDSDLQTE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V ++E + LL D + + EI G GG+EA + L RMY+RY Sbjct: 59 VETDLIALQEAFHNYELDLLLSGKYDSHNALFEIHPGAGGTEAMDWGQMLLRMYQRYCDT 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K E+ ++ G K + A + G + +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 AGFKFEINDYEPGEEAGVKSVTARVVGHNAYGMLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F + Sbjct: 239 SQIQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYNLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R V+ G + I L Sbjct: 296 DLRTGYETADTTGVMDGKLQPFIYSYLQW 324 >gi|325474491|gb|EGC77678.1| peptide chain release factor 2 [Treponema denticola F0402] Length = 320 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 110/313 (35%), Positives = 165/313 (52%), Gaps = 15/313 (4%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIG--DHNSDSEIRDLAQIEVLAIEKEIRELENE 96 I + ++I + + E DL ++ + + + E+ + ++ ++ ++L Sbjct: 1 MGEIKALKNRIYPWQELMDEVSDLEVLMELSEESGNEELSEEIGSNYNSVYEKYKKLSI- 59 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 L L D L + AG GG+EA + G L RMY R+ R +K E + + + Sbjct: 60 ---LSLLSGEVDKNDAYLTVHAGAGGTEACDWAGMLVRMYLRWCESRGFKTETIDVVEAE 116 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDV 215 GG K ISG F +K E+G+HR+ R+ +++GR HTS +V P I+V Sbjct: 117 -GGIKSATFQISGEFAFGLLKSETGIHRLVRISPFDSNGRRHTSFTSVFAFPVLDDTIEV 175 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 DI ED+RIDT RA G+GGQHVN TDSAVRITHIPTGI+V +++SQ NR AM VL+ Sbjct: 176 DIRPEDLRIDTYRAGGAGGQHVNKTDSAVRITHIPTGIVVACQTQRSQISNRATAMNVLK 235 Query: 275 ARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYV 331 +RLY+ ++ E A K I G+ +IR+Y F + DHR ++ V Sbjct: 236 SRLYNYYEEQKEKENMKFAAEKKGISWGN---QIRSYVFQPYTMVKDHRTKYETGNIQAV 292 Query: 332 LQGYIDDIINPLL 344 + G ID+ IN L Sbjct: 293 MDGDIDEFINSFL 305 >gi|89257152|ref|YP_514514.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica LVS] gi|115315491|ref|YP_764214.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica OSU18] gi|156503377|ref|YP_001429442.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica FTNF002-00] gi|254368376|ref|ZP_04984394.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica 257] gi|254368387|ref|ZP_04984404.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica FSC022] gi|89144983|emb|CAJ80343.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica LVS] gi|115130390|gb|ABI83577.1| peptide chain release factor B [Francisella tularensis subsp. holarctica OSU18] gi|134254184|gb|EBA53278.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica 257] gi|156253980|gb|ABU62486.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121281|gb|EDO65482.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica FSC022] Length = 325 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 167/331 (50%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELGEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANKAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|332525328|ref|ZP_08401493.1| hypothetical protein RBXJA2T_05833 [Rubrivivax benzoatilyticus JA2] gi|332108602|gb|EGJ09826.1| hypothetical protein RBXJA2T_05833 [Rubrivivax benzoatilyticus JA2] Length = 248 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 143/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + + D +C ++I+AG GG+EA + L R Y +Y + +K EV+ ++ D G + Sbjct: 1 MFANPADPSNCFIDIQAGAGGTEACDWASMLLRQYLKYCEKKGFKAEVMEETEGDVAGIR 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E+GVHR+ R +++G HTS A++ V PE + +++I Sbjct: 61 SATLKIEGDYAFGHLRTETGVHRLVRKSPFDSAGGRHTSFASLFVYPEVDDSIEIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH+NR A +LR+RLY+ Sbjct: 121 DVRTDTFRASGAGGQHINKTDSAVRLTHIPTGIVVQCQNDRSQHRNRDEAWAMLRSRLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ + + K +G G +IR+Y Q RI D R + + + VL G +D Sbjct: 181 HEMRKQMEAQQKLEDSKTDVGWG---HQIRSYVLDQSRIKDLRTGVEISNTQKVLDGDLD 237 Query: 338 DIINPLLTA 346 I L Sbjct: 238 PFIEASLKQ 246 >gi|134302701|ref|YP_001122669.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis WY96-3418] gi|134050478|gb|ABO47549.1| Peptide chain release factor 2 [Francisella tularensis subsp. tularensis WY96-3418] Length = 327 Score = 199 bits (505), Expect = 7e-49, Method: Composition-based stats. Identities = 101/333 (30%), Positives = 168/333 (50%), Gaps = 19/333 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELGEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAV---LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 TS A+V + + + +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V Sbjct: 175 TSFASVFISPEVDDDIDIDIEINPTDLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVV 234 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFS 312 + S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Sbjct: 235 QSQSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLD 291 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Q RI D R + + VL G +D I L Sbjct: 292 QSRIKDLRTGVENTNTQAVLDGDLDKFIEASLK 324 >gi|116629958|ref|YP_815130.1| protein chain release factor B [Lactobacillus gasseri ATCC 33323] gi|238854078|ref|ZP_04644428.1| peptide chain release factor 2 [Lactobacillus gasseri 202-4] gi|282851440|ref|ZP_06260805.1| peptide chain release factor 2 [Lactobacillus gasseri 224-1] gi|311110410|ref|ZP_07711807.1| peptide chain release factor 2 [Lactobacillus gasseri MV-22] gi|116095540|gb|ABJ60692.1| bacterial peptide chain release factor 2 (bRF-2) [Lactobacillus gasseri ATCC 33323] gi|238833312|gb|EEQ25599.1| peptide chain release factor 2 [Lactobacillus gasseri 202-4] gi|282557408|gb|EFB63005.1| peptide chain release factor 2 [Lactobacillus gasseri 224-1] gi|311065564|gb|EFQ45904.1| peptide chain release factor 2 [Lactobacillus gasseri MV-22] Length = 332 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 104/327 (31%), Positives = 168/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + K + + +++ +D T + +D + ++ Sbjct: 1 MAEPGFWDDQEQAQSLINETNRMKEKSENFKRLEEKFEDAQTALELLKADPDPELSEELS 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 ++ LL D D + ++EI G GG+EA + L RMY+RYAA Sbjct: 61 KEMFSLSQSF--HDYELSLLLSDKYDQHNALMEIHPGAGGTEAMDWADMLLRMYQRYAAN 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 K E+ ++ G K + I G+ F +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 HNLKFEIEDYEPGEEAGVKSVSVRIQGKNAFGLLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + +VDI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDQSIEVDINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +LRA+L+ +E ++ + + Q G +IR+Y F + DH Sbjct: 239 SQLQNRETAMNMLRAKLFQLEEEKKKKQTEELKGNQKEIG-FGSQIRSYVFHPYNMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R N + V+ G +DD I L Sbjct: 298 RTNFETSDVNGVMDGKLDDFIYAYLQW 324 >gi|224543374|ref|ZP_03683913.1| hypothetical protein CATMIT_02574 [Catenibacterium mitsuokai DSM 15897] gi|224523701|gb|EEF92806.1| hypothetical protein CATMIT_02574 [Catenibacterium mitsuokai DSM 15897] Length = 371 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 104/346 (30%), Positives = 170/346 (49%), Gaps = 6/346 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I LK + ++ + D T+ YA ++ + + ++L V Sbjct: 26 IEVLKREIEGLTVQTMDEHFWDDQAHATKVYAHLNEMKKVADTDASLEASYKELMEVYEY 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +A +E + E LL D + I+EI G GG+E+ + Sbjct: 86 VKDTEDPDFMASLEEDYMTFHKNLDE--FEKTLLFDQEYDHSNAIVEIHPGAGGTESQDW 143 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + WKV+V D+ G K +G + ++ E GVHR+ R+ Sbjct: 144 AEMLMRMYIRYGEKKGWKVDVDDYLAGDEAGLKSCSIRFTGYNAYGHLRAEKGVHRLVRI 203 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++S R HTS A+V V PE +I++ I +++RIDT RASG+GGQH+N TDSAVRIT Sbjct: 204 SPFDSSKRRHTSFASVEVSPELDDDIEITIDPKNLRIDTYRASGAGGQHINKTDSAVRIT 263 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPT +V S++SQ QNR +AM +L+++LY + ++ A + S + + + + +I Sbjct: 264 HIPTNTVVSCQSQRSQLQNREQAMLMLKSKLYLLMQEEHAEKLSEI-QGEKKNIEWGSQI 322 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R+Y + D+R + +L G +DD+I L + + Sbjct: 323 RSYVLHPYSMVKDNRSGYESNDQKKILDGELDDLIYAYLRSQVKEK 368 >gi|149409336|ref|XP_001510216.1| PREDICTED: similar to low density lipoprotein receptor-related protein 10 [Ornithorhynchus anatinus] Length = 380 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 140/293 (47%), Positives = 195/293 (66%), Gaps = 3/293 (1%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + H+ D E+R LA+ E++ +KEI EL +I +LL+P + D+ ILE+ AG GG EA Sbjct: 83 LLMHDEDEELRKLAESEIITCQKEIAELNRQIVFLLIPSEEADENDLILELTAGIGGQEA 142 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF ++F MYE+YAA +KW E L ++ GG + A+I G + +KFE GVHRV Sbjct: 143 MLFTAEMFDMYEQYAAYKKWHFETLEYFPSEIGGLRHATASIGGHEAYKHLKFEGGVHRV 202 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GR HTS TVAVLP+ EI++ I +D+RI+T RASG+GGQHVNTTDSAVR Sbjct: 203 QRVPKTERQGRTHTSTMTVAVLPQPTEINLVIHPKDLRIETKRASGAGGQHVNTTDSAVR 262 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTGI E+SQ +NR AMK LRA+LY ++ + ++R + RK+QIG+ RSE Sbjct: 263 IVHVPTGIASECQQERSQLKNREMAMKKLRAKLYSIQLEEETSKRYSARKIQIGTKGRSE 322 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSA 355 +IRTYNFSQ R+TDHRI+ + + +E + G +D++I+ L + + Sbjct: 323 KIRTYNFSQDRVTDHRISKSFHDIESFMLGERLLDELIHSLKEYSDYEALAEM 375 >gi|67969776|dbj|BAE01236.1| unnamed protein product [Macaca fascicularis] Length = 378 Score = 198 bits (504), Expect = 8e-49, Method: Composition-based stats. Identities = 130/363 (35%), Positives = 209/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 9 QKYMENLNKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 68 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ LLPK+ D ILE+ +G T Sbjct: 69 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLLPKEKYDKNDVILEVTSGRTT 128 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 129 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 188 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 189 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 248 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTT SAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 249 NTTVSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKCQQQSARKLQ 308 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R++DHRI + ++ L G +D +I LL + + + Sbjct: 309 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAVVE 368 Query: 355 ASE 357 + Sbjct: 369 LLD 371 >gi|212637017|ref|YP_002313542.1| peptide chain release factor 2 [Shewanella piezotolerans WP3] gi|212558501|gb|ACJ30955.1| Peptide chain release factor 2 [Shewanella piezotolerans WP3] Length = 293 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 D ++ + L + + + + D + ++ + + + D C Sbjct: 2 DSGLEDIEGLLELAVEEDDEETFNDASAELDDLEKRLEE-----LEFRRMFSGPHDAADC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I++G+GG+EA + + RM+ R+ +K E++ +D D G K +G Sbjct: 57 YLDIQSGSGGTEAQDWANMVLRMFLRWGEAHDYKPELIEVTDGDVAGIKGATIKFTGEYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 F ++ E+GVHR+ R ++SG+ HTS +V V PE + ++DI D+RIDT RASG Sbjct: 117 FGSLRTETGVHRLVRKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE--RKRMANE 288 +GGQHVN T+SA+RITH+PT +V +++SQH+NR AMK L+A+LY++E R+ + Sbjct: 177 AGGQHVNKTESAIRITHVPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLRQNADKQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AAEDAKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQSVLDGDLDKFIEASLK 290 >gi|148255578|ref|YP_001240163.1| peptide chain release factor 2 [Bradyrhizobium sp. BTAi1] gi|146407751|gb|ABQ36257.1| bacterial peptide chain release factor 2 (bRF-2) [Bradyrhizobium sp. BTAi1] Length = 323 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I ++ + ++ + N + + + R Sbjct: 1 MQERTSLEDSLTGIGKVERDLSDNIEMIELGEAENDAGVVTEAENALKALKKDVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +K+E L + Sbjct: 57 -RELEALLSGEADKFDTYLEVHAGAGGTESQDWAQMLLRMYTRWAEKHGFKIEYLEETQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++VA+ P I Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVAIFPVVDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ + +A++ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEKAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|241667458|ref|ZP_04755036.1| peptide chain release factor 2 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876005|ref|ZP_05248715.1| peptide chain release factor [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842026|gb|EET20440.1| peptide chain release factor [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 325 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 102/331 (30%), Positives = 169/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEYISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K + G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKVEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|116251510|ref|YP_767348.1| peptide chain release factor 2 [Rhizobium leguminosarum bv. viciae 3841] gi|115256158|emb|CAK07239.1| putative peptide chain release factor 2 (rf-2) [Rhizobium leguminosarum bv. viciae 3841] Length = 342 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 16/336 (4%) Query: 20 ELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 + + + KL E + I+ + +Q+ + +L + + S ++ Sbjct: 2 NNKAEDPNLWNDASEAQKLMRERQQLDDGINGVKQLEQQLNDNIELIELGEEEGDQSVVK 61 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + R + D LE+ +G GG+E+ + L RMY Sbjct: 62 EAEDTLKALKAEAAR-----RQVEAMLSGEADGNDTYLEVHSGAGGTESQDWANMLLRMY 116 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A +++KVE+L D ++ G K + G + +K ESGVHR+ R+ +++ R Sbjct: 117 TRWAERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNAR 176 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS +++ V P I ++I D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V Sbjct: 177 RHTSFSSIWVYPVVDDSIQIEINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVV 236 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFS 312 E+SQH+NR +A +LRAR+Y+ E K+ A A K +IG G +IR+Y Sbjct: 237 QCQQERSQHKNRAKAWDMLRARMYEAELKKREDAASAEAASKTEIGWG---HQIRSYVLQ 293 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + + VL G +++ + L Sbjct: 294 PYQMVKDLRTGVASSAPDDVLDGDLNEFMEAALAHR 329 >gi|157960584|ref|YP_001500618.1| peptide chain release factor 2 [Shewanella pealeana ATCC 700345] gi|157845584|gb|ABV86083.1| peptide chain release factor 2 [Shewanella pealeana ATCC 700345] Length = 293 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 12/297 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 D ++ + L + + N + D A ++ + + + D C Sbjct: 2 DSGLEDIEGLLELAVEENDEETFNDAAAELQGLEKRLEE-----LEFRRMFSKPHDASDC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I++G+GG+EA + + RM+ R+ +K E++ + D G K +G Sbjct: 57 YLDIQSGSGGTEAQDWANMVLRMFLRWGEAHDYKPELIEVTAGDVAGIKGATIKFTGEYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 F ++ E+GVHR+ R ++SG+ HTS +V V PE + ++DI D+RIDT RASG Sbjct: 117 FGSLRTETGVHRLVRKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANE 288 +GGQHVN T+SA+RITH+PT +V +++SQH+NR AMK L+A+LY++E + + Sbjct: 177 AGGQHVNKTESAIRITHLPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLKQNADKQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AAEDAKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQSVLDGDLDKFIEASLK 290 >gi|328676241|gb|AEB27111.1| Peptide chain release factor 2 [Francisella cf. novicida Fx1] Length = 325 Score = 198 bits (504), Expect = 9e-49, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 170/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V + SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADGHGFKVSVDNVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|219685347|ref|ZP_03540166.1| peptide chain release factor 2 [Borrelia garinii Far04] gi|219673120|gb|EED30140.1| peptide chain release factor 2 [Borrelia garinii Far04] Length = 350 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 110/342 (32%), Positives = 180/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 14 KEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEII 73 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ +I L + ++ L K+ D S L I +G GG+EA +V Sbjct: 74 ENEKDINSLEIEFNVLEKQYKDLLTI-----SYFKEELDINSAFLTIHSGAGGTEACDWV 128 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 129 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 187 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 188 PFDAAKKRHTSFASVFVDPVIDEKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 247 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 248 IETGIVTQSQSDRSQHKNKDMAMKVLKSRLYEYYKNKEDEKNKSKQELKKEISWGN---Q 304 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 305 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 346 >gi|209548908|ref|YP_002280825.1| peptide chain release factor 2 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209534664|gb|ACI54599.1| conserved hypothetical protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 376 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 105/346 (30%), Positives = 165/346 (47%), Gaps = 16/346 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R + + + + KL E + IS + +Q+ + Sbjct: 26 DQAIRRLDWLNNKAEDPNLWNDSTEAQKLMRERQQLDDGISGVKQLEQQLNDNI-----E 80 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + E + E K ++ + D LE+ +G GG+E+ Sbjct: 81 LIELGEEEGDEGVVKEAEDTLKALKAEAARRQVEAMLSGEADGNDTYLEVHSGAGGTESQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A +++KVE+L D ++ G K + G + +K ESGVHR+ Sbjct: 141 DWANMLLRMYTRWAERQRFKVELLEVHDGEEAGIKSATLLVKGHNAYGWLKTESGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS +++ V P I ++I D RIDT R+SG+GGQHVNTTDSAVR Sbjct: 201 RISPYDSNARRHTSFSSIWVYPVVDDSIQIEINEGDCRIDTYRSSGAGGQHVNTTDSAVR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGDR 302 ITH+PTGI+V E+SQH+NR +A +LRAR+Y+ E K+ A A K IG G Sbjct: 261 ITHMPTGIVVQCQQERSQHKNRAKAWDMLRARMYEAELKKREDAASAEAASKTDIGWG-- 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ + L Sbjct: 319 -HQIRSYVLQPYQLVKDLRTGVASTAPDDVLDGELNEFMEAALAHR 363 >gi|208780604|ref|ZP_03247943.1| peptide chain release factor 2 [Francisella novicida FTG] gi|254373627|ref|ZP_04989111.1| peptide chain release factor 2 [Francisella novicida GA99-3548] gi|151571349|gb|EDN37003.1| peptide chain release factor 2 [Francisella novicida GA99-3548] gi|208743579|gb|EDZ89884.1| peptide chain release factor 2 [Francisella novicida FTG] Length = 325 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------SELLELGEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V + SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADGHGFKVSVDNISDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|218890021|ref|YP_002438885.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa LESB58] gi|218770244|emb|CAW26009.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa LESB58] Length = 303 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 100/307 (32%), Positives = 160/307 (52%), Gaps = 12/307 (3%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 ++ + + +DL + + + + + D+A E + + + + Sbjct: 3 QVVETLDDLTSGLADSRDLLDMAVEEDDEGAVDDVANEVERLREILEK-----LEFRRMF 57 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 D + L+I+AG+GG+EA + L RMY R+A + ++ S+ + G K Sbjct: 58 SGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDATIIELSEGEVAGIKGA 117 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDI 222 I G F ++ E GVHR+ R ++ R HTS V V PE + +++I D+ Sbjct: 118 TVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFTAVFVSPEIDDNIEIEINPADL 177 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY++E Sbjct: 178 RIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELE 237 Query: 282 RKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 ++ A++ + K IG G +IR+Y Q RI D R + + VL G +D+ Sbjct: 238 MQKRTAASQALEDSKSDIGWG---HQIRSYVLDQSRIKDLRTGIERSDCDKVLDGDLDEY 294 Query: 340 INPLLTA 346 + L Sbjct: 295 LEASLKQ 301 >gi|313207347|ref|YP_004046524.1| bacterial peptide chain release factor 2 (brf-2) [Riemerella anatipestifer DSM 15868] gi|312446663|gb|ADQ83018.1| bacterial peptide chain release factor 2 (bRF-2) [Riemerella anatipestifer DSM 15868] gi|315023242|gb|EFT36252.1| peptide chain release factor 2 [Riemerella anatipestifer RA-YM] gi|325335194|gb|ADZ11468.1| Protein chain release factor B [Riemerella anatipestifer RA-GD] Length = 376 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 96/345 (27%), Positives = 168/345 (48%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 QI K + + + D + + + Y++ +DL +I Sbjct: 28 QIDKKKLEITNDDEKTAAPEFWDNPKEAEVFLKQLRSKKKWVEDYEEIHTGLEDLQVLIE 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + + +++ LE + + + D+ S +L+I AG GG+E+ Sbjct: 88 FAKEDPDSAQELETAYPTLLEKVENLE----FKNMLSNEGDELSAVLQITAGAGGTESCD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY +A +KV+ L+ + D G K + I G F +K E+GVHR+ R Sbjct: 144 WASMLMRMYLMWADKNGYKVKELNFQEGDVAGVKTVTLEIEGEYAFGYLKGENGVHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS A+V V P I+++I DI +TMRASG+GGQ+VN ++AVR+ Sbjct: 204 ISPFDSNAKRHTSFASVYVYPLVDDSIEININPADISFETMRASGAGGQNVNKVETAVRL 263 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 H PTGI++ S +SQ QN+ +A+++L++RLY++E + R+ K++I G Sbjct: 264 RHAPTGIIIENSESRSQLQNKEKALQLLKSRLYEIELEERMRARNEIEANKMKIEWG--- 320 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y + + D R ++ V+ G I + L A Sbjct: 321 SQIRNYVMHPYKLVKDVRSGHETSDVDAVMNGEITPFLKAYLMAD 365 >gi|291393031|ref|XP_002713016.1| PREDICTED: mitochondrial translational release factor 1 [Oryctolagus cuniculus] Length = 446 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 132/363 (36%), Positives = 210/363 (57%), Gaps = 11/363 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + D K LT +A ++P+ + + +Q ++L + Sbjct: 77 QKYMEDLHKEYQTLDECLQRISVNDGGRKSLTRRHAELAPLAAIYQEILEAQQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + +++ LA E I++++ L +E+ L+PK+ D ILE+ +G T Sbjct: 137 MCKSLNTQDEKQLQALALEERQTIDEKLNMLYSELFQNLVPKEKYDKNDVILEVISGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + WK E+L+ + + GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSCYKHWKFELLNYTPAEYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A+ VLRARLY ++ ++ + RKLQ Sbjct: 317 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALHVLRARLYQQIIEKDKCQQQSARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI+ + ++ L G +D +I LL + + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDHRISYEVRDIKEFLCGEKCLDQLIQRLLQSADEEAIIE 436 Query: 355 ASE 357 + Sbjct: 437 ILD 439 >gi|332299528|ref|YP_004441449.1| peptide chain release factor 2 [Porphyromonas asaccharolytica DSM 20707] gi|332176591|gb|AEE12281.1| peptide chain release factor 2 [Porphyromonas asaccharolytica DSM 20707] Length = 373 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 163/372 (43%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ +L R E ELR D + ++ + I Sbjct: 1 MITQDQLAELLERTKALGRYLDIDQRRVQLEEEELRTQAPDFWDDVPRAQQQMRRVGEIR 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 S I ++ Q++ + ++ K + +LE Sbjct: 61 SWIEAFEAVDAATQEVALAYDFYKEEAIEEQDVDDAYARAIKLVEDLELRNM----LSAE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I AG GG+E+ + L RMY+R+A +KV + + D DD G K + Sbjct: 117 EDRLGAVLKINAGAGGTESQDWASMLVRMYQRWAERSGYKVTITNWQDGDDAGIKTVTMQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V+P I+V++ + D Sbjct: 177 IEGELAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLVDDSIEVEVNPGLLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN ++ VR+ + T ++ + +SQ NR A+++LR++ Sbjct: 237 TFRSSGAGGQNVNKVETGVRLHYQYTDPDTGETEEIVIENTETRSQMDNRENALRLLRSQ 296 Query: 277 LYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E +R +S K +I G +IR+Y F R+ DHR + V+ G Sbjct: 297 LYDKELERRRAAQSEVEANKKKIEWG---SQIRSYVFDDRRVKDHRTGYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 +D I L Sbjct: 354 DLDAFIKAYLMQ 365 >gi|302759761|ref|XP_002963303.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii] gi|300168571|gb|EFJ35174.1| hypothetical protein SELMODRAFT_438470 [Selaginella moellendorffii] Length = 391 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 142/356 (39%), Positives = 208/356 (58%), Gaps = 31/356 (8%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + K++ +++R A + + E + IK+ +E + + I K++E Sbjct: 47 ILRILEKRMISIEDRHACLSEALLEPGIASEKLIKMNKELRNLDYSVDMIKALRAKEKEV 106 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L ++ + D E+R LA E+ +E+R+ ++++ L+PKD R+ Sbjct: 107 IGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEA--------ARSR 158 Query: 120 TGGSEAALFVGDLFRMYER------YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 G + D+F + R YAA W+ EVLS + D GYKE A ISG GV+ Sbjct: 159 AGKCSLMCLMFDMFHLIFRSWRYDKYAANNSWRFEVLSITTTDTRGYKEASAAISGDGVY 218 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 +KFESGVHRVQRVP TE +GR+HTS A+VA+LPEA E+DV+I ++I+IDT RA G+G Sbjct: 219 GALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGGAG 278 Query: 234 GQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 GQHVNTT SAVR+TH PTGI+V + RLY++ER R A RS R Sbjct: 279 GQHVNTTCSAVRVTHAPTGIVVAIQDT---------------RLYELERSRAAASRSELR 323 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQ 348 + QIGS DRSERIRTYNF QGR+TDHR+ +T + +E +++G ++ +N L H+ Sbjct: 324 QDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHAIEQIMEGIGLEIFVNALKMQHE 379 >gi|161615988|ref|YP_001589953.1| hypothetical protein SPAB_03788 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|213425820|ref|ZP_03358570.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213646961|ref|ZP_03377014.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|238909840|ref|ZP_04653677.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289823819|ref|ZP_06543431.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|16421591|gb|AAL21916.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161365352|gb|ABX69120.1| hypothetical protein SPAB_03788 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|261248173|emb|CBG26009.1| peptide chain release factor 2 (RF-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|301159597|emb|CBW19116.1| peptide chain release factor 2 (RF-2) [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914062|dbj|BAJ38036.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087470|emb|CBY97235.1| Peptide chain release factor 1 RF-1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321225716|gb|EFX50770.1| Peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613439|gb|EFY10380.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621031|gb|EFY17889.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624095|gb|EFY20929.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628166|gb|EFY24955.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633285|gb|EFY30027.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322636137|gb|EFY32845.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639476|gb|EFY36164.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647592|gb|EFY44081.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648776|gb|EFY45223.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653831|gb|EFY50157.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322657937|gb|EFY54205.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664040|gb|EFY60239.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668949|gb|EFY65100.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673057|gb|EFY69164.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677952|gb|EFY74015.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681128|gb|EFY77161.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687942|gb|EFY83909.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194862|gb|EFZ80049.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323196613|gb|EFZ81761.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202687|gb|EFZ87727.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323207826|gb|EFZ92772.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323212622|gb|EFZ97439.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214895|gb|EFZ99643.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222626|gb|EGA06991.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225095|gb|EGA09347.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230617|gb|EGA14735.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235032|gb|EGA19118.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323239071|gb|EGA23121.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244571|gb|EGA28577.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247186|gb|EGA31152.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253331|gb|EGA37160.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256362|gb|EGA40098.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262462|gb|EGA46018.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267442|gb|EGA50926.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269154|gb|EGA52609.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624786|gb|EGE31131.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332989908|gb|AEF08891.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 293 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 292 NR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|91784239|ref|YP_559445.1| peptide chain release factor 2 [Burkholderia xenovorans LB400] gi|91688193|gb|ABE31393.1| bacterial peptide chain release factor 2 (bRF-2) [Burkholderia xenovorans LB400] Length = 280 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 101/278 (36%), Positives = 155/278 (55%), Gaps = 7/278 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E + + + + I + ++ + + + D + L+I+AG GG+EA + L Sbjct: 4 EEGDEETLLACESDAQGIEQRVADMEFRRMFANPADPNNAFLDIQAGAGGTEACDWAAML 63 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 R Y RY + +K EVL +D D G K I G + ++ E+GVHR+ R + Sbjct: 64 LRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHRLVRKSPFD 123 Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 +SG HTS ++V V PE + +VDI D+RIDT RASG+GGQH+N TDSAVRITH+P+ Sbjct: 124 SSGGRHTSFSSVFVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVRITHLPS 183 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRT 308 GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G +IR+ Sbjct: 184 GIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQAEQDKLEAGKTDVGWG---HQIRS 240 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y RI D R N+ + + VL G +D I+ L Sbjct: 241 YVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 278 >gi|170723283|ref|YP_001750971.1| peptide chain release factor 2 [Pseudomonas putida W619] gi|169761286|gb|ACA74602.1| peptide chain release factor 2 [Pseudomonas putida W619] Length = 304 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 161/309 (52%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ ++ + + QDL + + N +S + D+ + + E ++ + Sbjct: 2 LAQVVETLDKMSGGLADCQDLLDMAVEENDESAVSDVVTE-----LQGLEEKLAQLEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S+ + G K Sbjct: 57 MFSGEMDMNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIIELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIDINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ + + K IG G +IR+Y RI D R + VL G ID Sbjct: 237 LEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCNKVLDGDID 293 Query: 338 DIINPLLTA 346 + L Sbjct: 294 QYLEASLKQ 302 >gi|88856358|ref|ZP_01131017.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1] gi|88814442|gb|EAR24305.1| peptide chain release factor 2 [marine actinobacterium PHSC20C1] Length = 368 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 166/342 (48%), Gaps = 7/342 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L + A + D K + + +S ++++ + DL ++ Sbjct: 27 DRLTSEIARLSEAAGAPDLWDDTDKAQKVTSDLSHRQAELAKINSISNRLDDLEIMVQLA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N +S+ + A A I++ ++ L D + ++ IRAG GG +AA F Sbjct: 87 NEESDAQAGADAR--AELTGIKKTLGDLEVQTLLNGEFDQRPAVITIRAGAGGVDAADFA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY RYA + VL +S ++ G K + F + E+G HR+ R+ Sbjct: 145 EMLLRMYLRYAEQHSYPTRVLDTSYAEEAGIKSATFEVDAPFAFGTLSVEAGTHRLVRMS 204 Query: 190 ATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++G+ TS A V V+P D V++P DIR+D R+SG GGQ VNTTDSAVRITH Sbjct: 205 PFNSAGKRQTSFAAVEVVPLIETTDVVEVPENDIRVDVFRSSGPGGQSVNTTDSAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +EKSQ QNR AM+VL++RL ++R++ A + + + +++R Sbjct: 265 LPTGIVVSCQNEKSQIQNRAAAMRVLQSRLLLLQREQEAATKKEI--AGVITASWGDQMR 322 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +Y + + + D R + V G +D I+ + + Sbjct: 323 SYVLAPYQMVKDLRTEFEVNNPSNVFDGDLDGFISAGIKWRK 364 >gi|255530197|ref|YP_003090569.1| hypothetical protein Phep_0282 [Pedobacter heparinus DSM 2366] gi|255343181|gb|ACU02507.1| hypothetical protein Phep_0282 [Pedobacter heparinus DSM 2366] Length = 357 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 94/363 (25%), Positives = 170/363 (46%), Gaps = 27/363 (7%) Query: 4 LSHKQICDLKNR------FAEIELRMSE----------SPSVDAYIKLTEEYAAISPIIS 47 ++ +QI DL++R + ++E R+ + D K + A I+ Sbjct: 1 MTKEQIQDLRDRVASLRRYLDVENRLEDIRIEQELTLQPNFWDDPKKAEQHIAEINSKKV 60 Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + Q +D + S + Q + A K I +LE + K + Sbjct: 61 WTDAWQQANSLLEDTLVLFDFLQSGDATEEEMQEQYDACLKAIEDLEL----KNMLKSKE 116 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D +++I AG GG+E+ + L RMY + +K+ + + G K + Sbjct: 117 DQLPAVMQITAGAGGTESCDWAYMLMRMYMMWGEKNGYKITEQDYQEGEIAGVKSVTLQF 176 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 SG + +K E+GVHR+ R+ +++ R HTS A+V V P I++++ +I +T Sbjct: 177 SGDFAYGYLKGENGVHRLVRISPFDSNARRHTSFASVYVYPLVDDTIEIEVKDSEIEFET 236 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+ G+GGQ+VN ++AVR+ H P+GI++ +SQ QN+ A+++L+++LY+ E ++ Sbjct: 237 FRSGGAGGQNVNKVETAVRLYHKPSGIIIKNQESRSQLQNKENAIRLLKSQLYEAEMRKR 296 Query: 286 ANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 + K +I G +IR+Y R+ DHR N + VL G ++D + Sbjct: 297 MEATALIEGNKKKIEWG---SQIRSYVLDDRRVKDHRTNFQSSNPQAVLDGELNDFLKAY 353 Query: 344 LTA 346 L Sbjct: 354 LME 356 >gi|254372144|ref|ZP_04987636.1| peptide chain release factor 2 [Francisella tularensis subsp. novicida GA99-3549] gi|151569874|gb|EDN35528.1| peptide chain release factor 2 [Francisella novicida GA99-3549] Length = 325 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 169/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEYISETLETL-------NELLELGEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ + + ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQNVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V + SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADGHGFKVSVDNISDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|325264746|ref|ZP_08131475.1| peptide chain release factor 2 [Clostridium sp. D5] gi|324030038|gb|EGB91324.1| peptide chain release factor 2 [Clostridium sp. D5] Length = 310 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 100/311 (32%), Positives = 166/311 (53%), Gaps = 6/311 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + + +Q + +D+ +I + + + IE E E I Sbjct: 1 MQHLKALQESVKQIEQLYADHEDIGLLIEMSEEEPDDETIGGIEEELDRFEEEFEELRIQ 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D S I+ + AG GG+E+ + L+RMY R+A + + +EVL D D Sbjct: 61 TL--LTGEYDSSSAIVTLHAGAGGTESCDWANMLYRMYSRWAEKKGFSLEVLDYLDGDVA 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K + + G + ++ E GVHR+ R+ A+G+ TS A+ V+P+ ID++I Sbjct: 119 GIKGVTFEVEGENAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVIPDIEDNIDIEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 E++RIDT R+ G+GGQHVN T SAVRITH+PTGI+V +E+SQH N+ +AM++L+A+ Sbjct: 179 NEEELRIDTYRSGGAGGQHVNKTSSAVRITHLPTGIVVQCQNERSQHMNKDKAMQMLKAK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY 335 LY ++++ A++ S R ++ +IR+Y + DHR N+ + + V+ G Sbjct: 239 LYLLKQQEQADKVSGIR-GEVKEIGFGSQIRSYVMQPYTLVKDHRTNMEISNVNGVMDGN 297 Query: 336 IDDIINPLLTA 346 +D IN L+ Sbjct: 298 LDPFINAYLSM 308 >gi|219684785|ref|ZP_03539727.1| peptide chain release factor 2 [Borrelia garinii PBr] gi|219671730|gb|EED28785.1| peptide chain release factor 2 [Borrelia garinii PBr] Length = 350 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 109/342 (31%), Positives = 180/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 14 KEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIV 73 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ +I L + ++ L K+ D + L I +G GG+EA +V Sbjct: 74 ENEKDINSLEIEFNVLEKQYKDLLTI-----SYFKEELDINNAFLTIHSGAGGTEACDWV 128 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 129 TMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 187 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 188 PFDAAKKRHTSFASVFVDPVIDEKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 247 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 248 IETGIVTQSQSDRSQHKNKDMAMKVLKSRLYEYYKNKEDKKNKSKQELKKEISWGN---Q 304 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 305 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 346 >gi|283835350|ref|ZP_06355091.1| peptide chain release factor 2 [Citrobacter youngae ATCC 29220] gi|291068515|gb|EFE06624.1| peptide chain release factor 2 [Citrobacter youngae ATCC 29220] Length = 293 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 158/297 (53%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + + ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDTLEDKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + I+G + Sbjct: 58 LDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIRIAGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|91226783|ref|ZP_01261436.1| peptide chain release factor 2 [Vibrio alginolyticus 12G01] gi|269964522|ref|ZP_06178762.1| peptide chain release factor 2 [Vibrio alginolyticus 40B] gi|91188914|gb|EAS75198.1| peptide chain release factor 2 [Vibrio alginolyticus 12G01] gi|269830759|gb|EEZ84978.1| peptide chain release factor 2 [Vibrio alginolyticus 40B] Length = 289 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/293 (35%), Positives = 160/293 (54%), Gaps = 12/293 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ + L + + E+ E+ E ++ + + D C +++ Sbjct: 2 EDVEGLLELAVEEEDQE-----TFDEIEPELAELEEKLEKLEFRRMFSGDHDSSDCYIDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K EV+ S+ + G K ISG + + Sbjct: 57 QAGSGGTEAQDWTNMLLRMYLRWAEAKGFKAEVIEVSEGEVAGLKSATVRISGEYAYGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS A+ + PE E D+DI D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEIDENIDIDINPSDLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR- 293 HVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN Sbjct: 177 HVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANED 236 Query: 294 -KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLDKFIEASLK 286 >gi|62181551|ref|YP_217968.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205353965|ref|YP_002227766.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858304|ref|YP_002244955.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224584830|ref|YP_002638628.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|62129184|gb|AAX66887.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|205273746|emb|CAR38741.1| peptide chain release factor 2 (RF-2) [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|206710107|emb|CAR34462.1| peptide chain release factor 2 (RF-2) [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224469357|gb|ACN47187.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|322716032|gb|EFZ07603.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|326629079|gb|EGE35422.1| peptide chain release factor RF-2 [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 293 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 156/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEIIEESEGEVAGIKSATIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 292 NR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|242309101|ref|ZP_04808256.1| peptide chain release factor 2 [Helicobacter pullorum MIT 98-5489] gi|239524525|gb|EEQ64391.1| peptide chain release factor 2 [Helicobacter pullorum MIT 98-5489] Length = 364 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 108/344 (31%), Positives = 185/344 (53%), Gaps = 10/344 (2%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L+ R EIE + + K E ++ + + D + + Sbjct: 28 KLEARIKEIETLEQQKEFWEDSKKAGEYQKEKKRCERQLEKFQEANLALNDAKELFEISS 87 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D + + E ++E++I++ E E+ + I I G GG+E+ + Sbjct: 88 DDEQTLNELFSEANSLEEQIKKAEIEVMLSDELDSNNA----IFTITPGAGGTESQDWAS 143 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY R+A R +KVE+L + D+ G K+ I G + K E+G+HR+ R+ Sbjct: 144 MLYRMYLRWAERRGFKVELLDYQEGDEAGIKDASFIIKGENAYGYAKVENGIHRLVRISP 203 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ + HTS A+V V PE + +++I +D+RIDT RASG+GGQH+N T+SA+RITHI Sbjct: 204 FDSNAKRHTSFASVQVTPEIDDNIEIEIEEKDLRIDTYRASGAGGQHINKTESAIRITHI 263 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTGI+V +++SQH+N+ A+K+L+++LY++E ++ + S + K +IG G +IR+ Sbjct: 264 PTGIVVQCQNDRSQHKNKATALKMLKSKLYELEAQKRNEQTSNDDKSEIGWG---HQIRS 320 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 Y + +I D R N+ +E +L G ID I+ +L +K Sbjct: 321 YVLAPYQQIKDLRSNIAYSNVEAILDGDIDAILEGVLIHINSKQ 364 >gi|328675334|gb|AEB28009.1| Peptide chain release factor 2 [Francisella cf. novicida 3523] Length = 325 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 103/331 (31%), Positives = 171/331 (51%), Gaps = 17/331 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L ++ + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGKQKVELENVVHNCEHISETLETL-------SELLELAEEDET 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVASEIEKLEFRRMFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V + SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVSVDNVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDNAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 RI D R + + VL G +D I L Sbjct: 292 RIKDLRTGVENTNTQAVLDGDLDKFIEASLK 322 >gi|30961857|gb|AAP40012.1| peptide chain release factor-2 [Citrobacter freundii] Length = 293 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 99/297 (33%), Positives = 158/297 (53%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + + ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDTLEDKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + I+G + Sbjct: 58 LDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIRIAGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 292 NR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|238854884|ref|ZP_04645214.1| peptide chain release factor 2 [Lactobacillus jensenii 269-3] gi|260664171|ref|ZP_05865024.1| peptide chain release factor 2 [Lactobacillus jensenii SJ-7A-US] gi|282931596|ref|ZP_06337089.1| peptide chain release factor 2 [Lactobacillus jensenii 208-1] gi|313472385|ref|ZP_07812877.1| peptide chain release factor 2 [Lactobacillus jensenii 1153] gi|238832674|gb|EEQ24981.1| peptide chain release factor 2 [Lactobacillus jensenii 269-3] gi|239529755|gb|EEQ68756.1| peptide chain release factor 2 [Lactobacillus jensenii 1153] gi|260562057|gb|EEX28026.1| peptide chain release factor 2 [Lactobacillus jensenii SJ-7A-US] gi|281304207|gb|EFA96316.1| peptide chain release factor 2 [Lactobacillus jensenii 208-1] Length = 332 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 94/331 (28%), Positives = 165/331 (49%), Gaps = 12/331 (3%) Query: 23 MSESPSVDAYIKLTEEYA---AISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + + + + + Q +E+ ++ + + ++ Sbjct: 1 MADPDFWNNQESAQKLISATNKLKEKRDHFNDLAQAFSDEEAALELLKEESDTDLQAEVE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + +++ ++ LL D + ++EI G GG+EA + L RMY+R+ Sbjct: 61 -----SDLESLKDSFHQYELNLLLSGKYDTNNALMEIHPGAGGTEAMDWAQMLMRMYQRF 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 + + E+ D+ G K + I G + +K E GVHR+ R+ +A+ R HT Sbjct: 116 SEAHGFTFEIDDYEPGDEAGVKSVSVLIKGTNAYGLLKGEMGVHRLVRISPFDAAKRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A+V V+PE + +VDI D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + Sbjct: 176 SFASVEVIPEIDDSIEVDINPADLRIDVFRSSGAGGQHINKTSSAVRITHLPTGIVTTSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +++SQ QN+ AM LRA+L+ +E ++ E+ + +Q +IR+Y F + Sbjct: 236 AQRSQFQNKETAMNALRAKLFQLEEEKKRKEKEKLKGVQ-QDIAWGSQIRSYVFHPYSMV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 DHR N + V+ G +D++I L Sbjct: 295 KDHRTNFETSDVNGVMDGKLDNLIYSFLQWR 325 >gi|146340475|ref|YP_001205523.1| peptide chain release factor 2 [Bradyrhizobium sp. ORS278] gi|146193281|emb|CAL77297.1| Peptide chain release factor 2 (RF-2) [Bradyrhizobium sp. ORS278] Length = 323 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 164/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ + ++ + N + + ++ R Sbjct: 1 MQERTSLEDSLTGIGKVERELSDNIEMIELGEAENDAGVVAEAENALKELKKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +KVE L S Sbjct: 57 -RELEALLSGEADKFDTYLEVHAGAGGTESQDWASMLLRMYTRWAETHGFKVEYLEESLG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P I Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQIFPVIDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ + +A++ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEKAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLNGDLDEFMAATLAQR 309 >gi|312868547|ref|ZP_07728744.1| peptide chain release factor 2 [Lactobacillus oris PB013-T2-3] gi|311095918|gb|EFQ54165.1| peptide chain release factor 2 [Lactobacillus oris PB013-T2-3] Length = 332 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 103/334 (30%), Positives = 167/334 (50%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + + + + + +K Y + + + E + E Sbjct: 1 MAQPDFWNDNERAQKLINDNNDLKAKRDTYVALRDQL--ADLETNLELLELEPDPELEKE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E + L + D K+ ILEI G GG+EA + L RMY R+A Sbjct: 59 FATSFAQTEEALQQYRLNQLLSEKYDSKNAILEIHPGAGGTEAQDWGEMLLRMYVRWAEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 VE + + G K + I G F ++ E GVHR+ R+ +++GR HTS A Sbjct: 119 HGLTVETANYEPGEVAGIKSVTLLIKGHNAFGYLRSEKGVHRLVRISPFDSAGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE ++VDI D+R+DT R+SG+GGQH+N T+SAVRITH+PTG++ + +E+ Sbjct: 179 SVDVMPELDDSVEVDINPADLRVDTFRSSGAGGQHINKTESAVRITHLPTGLVASSQAER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ NR AM +L+++LY++E ++ A ER+ Q IG G +IR+Y F + Sbjct: 239 SQLLNRQTAMNMLKSKLYELEEEKKAKERAEIEGEQLEIGWG---SQIRSYVFHPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 D+R + + V+ G +D IN L ++ Sbjct: 296 DNRSGHETHNGQAVMDGDLDPFINAYLQWKLSQQ 329 >gi|73989054|ref|XP_848713.1| PREDICTED: similar to mitochondrial translational release factor 1 isoform 2 [Canis familiaris] Length = 444 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 130/360 (36%), Positives = 207/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + + L +A ++P+ + + +Q ++L + Sbjct: 75 QKYMEDLNKEYRTLDQCLQHLSVNEGDRKSLNRRHAELAPLAAIYQEIQEAEQAIEELDS 134 Query: 65 VIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + + ++++LA E I ++I L +E+ L+PK+ D I+E+ +G T Sbjct: 135 MCKSLSKQDEKQLQELALEERQTIAEKINVLYSELFQSLVPKEKYDKNDVIIEVTSGRTT 194 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y++ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 195 GGDICQQFTREIFDMYQNYSSYKNWKFELLNYTPADYGGLHHAAARISGDNVYKHLKYEG 254 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 GVHRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 255 GVHRVQRIPEVGLSARMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRIDTFRAKGAGGQHV 314 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ + RKLQ Sbjct: 315 NTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEKDKCQQQSTRKLQ 374 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I LL + + I Sbjct: 375 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRGIKEFLCGEKCLDQLIQRLLHSADEEAITE 434 >gi|328543671|ref|YP_004303780.1| peptide chain release factor 2 [polymorphum gilvum SL003B-26A1] gi|326413415|gb|ADZ70478.1| Peptide chain release factor 2 [Polymorphum gilvum SL003B-26A1] Length = 323 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 159/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + + + + +L + S + + + ++ ++ Sbjct: 1 MRERQQLDEGITGVRRLESELSDNIELIELGDLEGDKSVVNEAEEALRGLKDEVLK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D LEI AG GG+E+ + L RMY R+A R +KVE+L D Sbjct: 57 -LQMASLLSGEADGNDTYLEINAGAGGTESQDWASMLLRMYRRWAEKRGYKVELLEVHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ ++ R HTS A+ V P I+ Sbjct: 116 EEAGIKSATLLIKGENAYGWLKTESGVHRLVRISPYDSQARRHTSFASAWVYPVVDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI D RIDT RASG+GGQHVNTTDSAVRITHIPTGI+V SE+SQH+NR A +L Sbjct: 176 IDINESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGIVVQCQSERSQHKNRATAWAML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +AR+Y+ E ++ A A K IG G +IR+Y + + D R + + Sbjct: 236 KARMYEAELQKREEAASAEAASKTSIGWG---HQIRSYVLQPYQMVKDLRTGVESSSPDD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLNGDLDPFMEAALAQR 309 >gi|242066770|ref|XP_002454674.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor] gi|241934505|gb|EES07650.1| hypothetical protein SORBIDRAFT_04g035390 [Sorghum bicolor] Length = 467 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 98/340 (28%), Positives = 161/340 (47%), Gaps = 11/340 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + R ++ + + + + ++ KI +Q +QE + ++ Sbjct: 123 ILERTKQLAVVLERPDLWEDPVFAGRVSREQGELMGKIKSVNQLEQELIEHIEMLRLARE 182 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ + + I E L +D SC +E++AG GG+E+ + Sbjct: 183 ENDNELEMESMRALADMRISAKEK--ELNALLSRDNDSCSCFIEVQAGAGGTESMDWAAM 240 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 + MY+ +A R + V V+ + G K + G F K E GVHR+ R+ Sbjct: 241 VMNMYKSWAQRRGYTVTVVEEMPGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 300 Query: 192 EASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS A VAV+P A I D+RI+ R+ G GGQH NTT+SA+RI HI Sbjct: 301 DSGKRRHTSFAAVAVIPILGDASSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHI 360 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERI 306 PTGI + +E+SQH N+ AM VL++RL +E R A + + + +I G+ +I Sbjct: 361 PTGISATSQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEISWGN---QI 417 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y R + D R N + + VL+G +DD I L+ Sbjct: 418 RSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDDFILNYLS 457 >gi|291299376|ref|YP_003510654.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM 44728] gi|290568596|gb|ADD41561.1| peptide chain release factor 2 [Stackebrandtia nassauensis DSM 44728] Length = 376 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 96/353 (27%), Positives = 156/353 (44%), Gaps = 7/353 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L +E+E + D + + +S + S+++ + ++ D + Sbjct: 25 DLDALSVEKSELEAAAASPDLWDDTTHAQKVTSRLSYVQSELNRIEDLRRRLDDAEVLWD 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 S+ + + + E L D + ++ IR+G GG+++A Sbjct: 85 LAQSEEDPAAVEEASKELAALSKAIEEL--EVRTLLSGEYDSREALISIRSGAGGADSAD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A + EV S ++ G K + + + E G HRV R Sbjct: 143 FAEQLMRMYLRWAERHGYPTEVYDVSYAEEAGIKSATFAVKAPYAYGTLSVEQGTHRVVR 202 Query: 188 VPATEASGRVHTSA-ATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + GR T+ A V D+DIP ++IR+D R+SG GGQ VNTTDSAVRI Sbjct: 203 ISKYDNQGRRQTAFAAVEVVPVVEQTDDIDIPDDEIRVDVYRSSGPGGQGVNTTDSAVRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+ TGI+V +E+SQ QNR AM VL+A+L R+ + R S E+ Sbjct: 263 THLETGIVVSCQNERSQLQNRATAMAVLKAKLLARRREEENAKIDELRGSVQAS--WGEQ 320 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +R+Y + + D R + V G ID +I + + + A+E Sbjct: 321 MRSYVQHPYQMVKDLRTGWETANVMAVYDGEIDGLIEAGIRWRKQQENQKATE 373 >gi|156055958|ref|XP_001593903.1| hypothetical protein SS1G_05331 [Sclerotinia sclerotiorum 1980] gi|154703115|gb|EDO02854.1| hypothetical protein SS1G_05331 [Sclerotinia sclerotiorum 1980 UF-70] Length = 490 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 124/373 (33%), Positives = 195/373 (52%), Gaps = 32/373 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L + SES + K+ + + + + + +++ K+ +L ++ D + Sbjct: 111 NLAAEHDRLSSETSESFN----AKVAKRIGELQDVATALKKWEETKESLSELDALLQDSS 166 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+R+LA ++ + EL + L PK + C++EIR G GG EAA+F Sbjct: 167 TDEELRELAVEDLTTTTAHLEELSRNLTTSLTPKHPFAELPCLVEIRPGAGGGEAAIFAA 226 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 DL RMY Y A ++++ ++ D G E+V I G + ++ E+GVHR Sbjct: 227 DLLRMYRAYCARKRFRSTIIKYETADGEGAGSDSPISEVVLEIETPGSYDSLRGEAGVHR 286 Query: 185 VQRVPATEASGRVHTSAATVAVLP-----------------EAAEIDVDIPLEDIRIDTM 227 VQRVPATE GR HTSA +V VLP D + D+R D M Sbjct: 287 VQRVPATEKQGRTHTSAVSVMVLPSFPTTGQEGQEYWEADLNDPNSDYYVNPADVRTDVM 346 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVNTTDSAVR+TH+PT +V+ +SQ QNR +A +VLR+RL +R+ Sbjct: 347 RARGAGGQHVNTTDSAVRLTHVPTNTVVSMQEGRSQLQNRQKAWQVLRSRLAAAKREARE 406 Query: 287 NERSANRKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 + R+ IG R ++IRTYN+ Q R+TDHR L+++ L+ V++G ++ +I+ Sbjct: 407 EQLINLRRSVIGVAKMGRGDKIRTYNWGQQRVTDHRSGLSVHNLDDVMEGGDELEKVIDS 466 Query: 343 LLTAHQAKMIGSA 355 + + I Sbjct: 467 VKAWFSEQEILGL 479 >gi|296158326|ref|ZP_06841157.1| peptide chain release factor 2 [Burkholderia sp. Ch1-1] gi|295891270|gb|EFG71057.1| peptide chain release factor 2 [Burkholderia sp. Ch1-1] Length = 280 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 101/278 (36%), Positives = 155/278 (55%), Gaps = 7/278 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E + + + + I + ++ + + + D + L+I+AG GG+EA + L Sbjct: 4 EEGDEATLLACESDAQGIEQRVADMEFRRMFSNPADPNNAFLDIQAGAGGTEACDWAAML 63 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 R Y RY + +K EVL +D D G K I G + ++ E+GVHR+ R + Sbjct: 64 LRQYLRYCERKGFKTEVLEQTDGDVAGIKNATIKIEGEYAYGFLRTETGVHRLVRKSPFD 123 Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 +SG HTS ++V V PE + +VDI D+RIDT RASG+GGQH+N TDSAVRITH+P+ Sbjct: 124 SSGGRHTSFSSVFVYPEIDDSIEVDINPADLRIDTYRASGAGGQHINKTDSAVRITHMPS 183 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRT 308 GI+V +++SQH+NR AM +L++RLY+ E ++ E+ K +G G +IR+ Sbjct: 184 GIVVQCQNDRSQHRNRAEAMAMLKSRLYEAEIRKRQEEQDKLEAGKTDVGWG---HQIRS 240 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y RI D R N+ + + VL G +D I+ L Sbjct: 241 YVLDNSRIKDLRTNVEISNTKSVLDGDLDPFISASLKQ 278 >gi|238921196|ref|YP_002934711.1| peptide chain release factor 2, [Edwardsiella ictaluri 93-146] gi|238870765|gb|ACR70476.1| peptide chain release factor 2, putative [Edwardsiella ictaluri 93-146] gi|304560096|gb|ADM42760.1| Peptide chain release factor 2 [Edwardsiella tarda FL6-60] Length = 293 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDLLDVKLGQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A + +K E++ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAESKGFKTEIIEESEGEVAGLKSATIKISGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ ER Sbjct: 178 GGQHVNKTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAERQQ 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R ++ + VL G +D I L A Sbjct: 238 MEDTKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 291 >gi|85059968|ref|YP_455670.1| peptide chain release factor RF-2 [Sodalis glossinidius str. 'morsitans'] gi|84780488|dbj|BAE75265.1| peptide chain release factor RF-2 [Sodalis glossinidius str. 'morsitans'] Length = 289 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 12/293 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + + A + ++ + + D C ++I Sbjct: 2 EDVAGLLELAVGEDDEETFLETQ-----AELDGLEAKLGQLEFRRMFSGEYDSADCYVDI 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A R +K E++ S+ + G K + + G + + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKVIGDYAYGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITH+PT I+ +++SQH+N+ +AMK L+A+LY+ E ++ E+ + Sbjct: 177 HVNRTESAVRITHLPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYEFELQKKNAEKKALED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 TKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNAQSVLDGDLDKFIEASLK 286 >gi|294634840|ref|ZP_06713362.1| peptide chain release factor 2 [Edwardsiella tarda ATCC 23685] gi|291091713|gb|EFE24274.1| peptide chain release factor 2 [Edwardsiella tarda ATCC 23685] Length = 293 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 98/297 (32%), Positives = 157/297 (52%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A ++ ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFDEAV-----AELDQLEVKLGQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A + +K E++ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEAKGFKTEIIEESEGEVAGLKSATIKISGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ ER Sbjct: 178 GGQHVNKTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEVQKKNAERQQ 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R ++ + VL G +D I L A Sbjct: 238 MEENKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 291 >gi|167622749|ref|YP_001673043.1| peptide chain release factor 2 [Shewanella halifaxensis HAW-EB4] gi|167352771|gb|ABZ75384.1| peptide chain release factor 2 [Shewanella halifaxensis HAW-EB4] Length = 293 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 95/297 (31%), Positives = 154/297 (51%), Gaps = 12/297 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 D ++ + L + + + + D A + + + + D C Sbjct: 2 DSGLEDIEGLLELAVEEDDEETFNDAAAELQDLERRLEE-----LEFRRMFSGPHDASDC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I++G+GG+EA + + RM+ R+ +K E++ + D G K +G Sbjct: 57 YLDIQSGSGGTEAQDWANMVLRMFLRWGDAHDYKPELIEVTGGDVAGIKGATIKFTGEYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 F ++ E+GVHR+ R ++SG+ HTS +V V PE + ++DI D+RIDT RASG Sbjct: 117 FGSLRTETGVHRLVRKSPFDSSGKRHTSFCSVFVYPEIDDSIEIDINPSDLRIDTYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANE 288 +GGQHVN T+SA+RITH+PT +V +++SQH+NR AMK L+A+LY++E + + Sbjct: 177 AGGQHVNKTESAIRITHLPTNTVVQCQNDRSQHKNRDAAMKQLKAKLYELEMLKQNADKQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + K IG G +IR+Y RI D R + + VL G +D I L Sbjct: 237 AAEDAKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQSVLDGDLDKFIEASLK 290 >gi|315037900|ref|YP_004031468.1| peptide chain release factor 2 [Lactobacillus amylovorus GRL 1112] gi|325956373|ref|YP_004291785.1| peptide chain release factor 2 [Lactobacillus acidophilus 30SC] gi|312276033|gb|ADQ58673.1| peptide chain release factor 2 [Lactobacillus amylovorus GRL 1112] gi|325332938|gb|ADZ06846.1| peptide chain release factor 2 [Lactobacillus acidophilus 30SC] gi|327183192|gb|AEA31639.1| peptide chain release factor 2 [Lactobacillus amylovorus GRL 1118] Length = 332 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 94/332 (28%), Positives = 157/332 (47%), Gaps = 16/332 (4%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M++ + K + + + + ++E ++ + ++ Sbjct: 1 MAQPDFWNDQEKAQKLISENNVLKEKRDSFLKLQKGYEDESTAVELLREEPDPDLQKETE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + ++ + LL D + ++EI G GG+EA + L RMY+RY Sbjct: 61 EDLATLQDEF-----HNYELDLLLSGKYDSHNALMEIHPGAGGTEAMDWGQMLLRMYQRY 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K E+ ++ G K + A I G+ + +K E+GVHR+ R+ +A+ R HT Sbjct: 116 CDSAGFKFEINDYEPGEEAGLKSVSARIVGKNAYGMLKSENGVHRLVRISPFDAAKRRHT 175 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S A+V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + Sbjct: 176 SFASVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG- 314 +++SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F Sbjct: 236 AQRSQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYN 292 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D R V+ G + I L Sbjct: 293 LVKDLRTGYETADANGVMDGKLQPFIYSYLQW 324 >gi|325109320|ref|YP_004270388.1| bacterial peptide chain release factor 2 (bRF-2) [Planctomyces brasiliensis DSM 5305] gi|324969588|gb|ADY60366.1| bacterial peptide chain release factor 2 (bRF-2) [Planctomyces brasiliensis DSM 5305] Length = 373 Score = 198 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 106/339 (31%), Positives = 171/339 (50%), Gaps = 10/339 (2%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 + EI RM++ D K E A + + S ++ ++ Q DL ++ +D Sbjct: 30 EQVKEINDRMAQPGFWDNQEKAQETMAELRRLKSLVTPLEELVQGRDDLEVLLEFAEADD 89 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + E+ + + + +++ + LL +D + + I+AG GG++AA + L Sbjct: 90 S--EETVQEITSTCDRLGSIVDKVEFQLLLGQPEDALNAYVTIQAGEGGTDAADWAEMLL 147 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY R+A + E+L +D ++ G + I G F +K ESG HR+ R+ + Sbjct: 148 RMYIRWAEKEEMATELLERTDAEEAGIRHATLLIKGDYAFGYLKGESGNHRLVRMSPFNS 207 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIP--LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 +G+ T+ A V V PE + D+ DTMRA G+GGQHVN T+SAVR+TH + Sbjct: 208 AGKRQTAFAAVDVTPEVDDSFEIDIDWDNDVDEDTMRAGGAGGQHVNKTESAVRLTHKES 267 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRT 308 G++V +E+SQHQNR A K+L A+LY +E ++ +E +A R K +IG G E IR Sbjct: 268 GLVVRCQNERSQHQNRASARKMLTAKLYQMEIEKRESENAARRGEKSKIGFG--GETIRN 325 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y + + D R L VL+G +D + L Sbjct: 326 YVLQPEQFVKDTRSELKTANPLTVLEGELDPFLEAYLKW 364 >gi|260593398|ref|ZP_05858856.1| peptide chain release factor 2, programmed [Prevotella veroralis F0319] gi|260534674|gb|EEX17291.1| peptide chain release factor 2, programmed [Prevotella veroralis F0319] Length = 372 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R F E +LR D + E+ + I Sbjct: 1 MITADQLKDITERTDALHRYLGIDEKRIEFEEEQLRTQAPDFWDDPKRAQEQMKKVKDIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I YD+ + ++ + + + K I +LE + + Sbjct: 61 KWIKGYDEARSLTDEVQLAFDFYKDNLVTEEEVDTAYNKALKAIEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV + + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAHGYKVTISDIQEGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRMEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|226528475|ref|NP_001148129.1| peptide chain release factor 2 [Zea mays] gi|195616002|gb|ACG29831.1| peptide chain release factor 2 [Zea mays] Length = 467 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 11/340 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + R ++ + + + + + ++ KI +Q +QE + ++ Sbjct: 123 ILERTKQLAVVLEKPDLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLARE 182 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ + + E L +D SC +E++AG GG+E+ + Sbjct: 183 ENDNELEMESMKALADMRRSAKEK--ELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAM 240 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 + MY +A R +K+ V+ + G K + G F K E GVHR+ R+ Sbjct: 241 VMNMYRSWAQRRGYKITVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 300 Query: 192 EASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS A VAV+P I D+RI+ R+ G GGQH NTT+SA+RI HI Sbjct: 301 DSGKRRHTSFAAVAVIPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHI 360 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERI 306 PTGI + +E+SQH N+ AM VL++RL +E R A + + + +I G+ +I Sbjct: 361 PTGISATSQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEISWGN---QI 417 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y R + D R N + + VL+G +DD I L+ Sbjct: 418 RSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDDFILNYLS 457 >gi|225621552|ref|YP_002722811.1| peptide chain release factor 2 [Brachyspira hyodysenteriae WA1] gi|225216373|gb|ACN85107.1| peptide chain release factor 2 [Brachyspira hyodysenteriae WA1] Length = 312 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 154/317 (48%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + I + + +L + + N ++L + + Sbjct: 1 MKERMLLLDKIEPVENLIKNSNNIYELVEMAIESNDSEMEKELETECLELQKVFDE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D K+ L + AG GG+E+ + L RMY R+ + VE Sbjct: 57 -LETKNLFSGEFDSKNAYLTLNAGAGGTESCDWASMLSRMYVRFCERHGFTVETTDELPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV 215 D+ G K+I + G + ++ E GVHR+ R+ +A+ + HTS V+V+P+ E Sbjct: 116 DEAGIKQISFYVQGLYAYGYLRSEIGVHRLVRISPFDANAKRHTSFVAVSVMPDIDEDIE 175 Query: 216 DIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 D+RIDT RASG+GGQHVN T SA+RITHIPT I+V +E+SQH N+ AMK+L Sbjct: 176 IEINPADLRIDTYRASGAGGQHVNKTSSAIRITHIPTNIVVQCQAERSQHNNKDMAMKML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +A+LY +E++++ E+ K I G+ +IR+Y F + + D R + Sbjct: 236 KAKLYQLEKEKLDKEKQKIAGEKTDIAWGN---QIRSYVFQPYQMVKDLRTGCESGNMNS 292 Query: 331 VLQGYIDDIINPLLTAH 347 V+ G ID+ I+ L Sbjct: 293 VMDGNIDEFISAYLKQQ 309 >gi|90424348|ref|YP_532718.1| peptide chain release factor 2 [Rhodopseudomonas palustris BisB18] gi|90106362|gb|ABD88399.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodopseudomonas palustris BisB18] Length = 322 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 159/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + I +++ + D+ + N + E A K +++ Sbjct: 1 MQERTSLEDSLGGIGKVERELTDNVDMIELGEAEND-----EGVVAEAEAALKALKKEVA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +K+E L + Sbjct: 56 RRELEALLSGEADRFDSYLEVHAGAGGTESQDWASMLLRMYTRWAEKHGFKIEYLEETQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P I Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQIFPVVDNTIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+N+ +A +L Sbjct: 176 IDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNKAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMGATLAQR 309 >gi|161506411|ref|YP_001573523.1| hypothetical protein SARI_04609 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867758|gb|ABX24381.1| hypothetical protein SARI_04609 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 293 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 105/297 (35%), Positives = 161/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 292 NR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|219887937|gb|ACL54343.1| unknown [Zea mays] Length = 467 Score = 198 bits (502), Expect = 2e-48, Method: Composition-based stats. Identities = 96/340 (28%), Positives = 160/340 (47%), Gaps = 11/340 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + R ++ + + + + + ++ KI +Q +QE + ++ Sbjct: 123 ILERTKQLAVVLEKPDLWEDPVFAGRVSREQGELMGKIKSVNQFEQELIEHIEMLRLARE 182 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ + + E L +D SC +E++AG GG+E+ + Sbjct: 183 ENDNELEMESMKALADMRRSAKEK--ELNALLSGDNDSCSCFIEVQAGAGGTESMDWAAM 240 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 + MY +A R +K+ V+ + G K + G F K E GVHR+ R+ Sbjct: 241 VMNMYRSWAQRRGYKITVVEEMSGEVAGIKRATIKVDGEYAFGYAKAEVGVHRLVRISPF 300 Query: 192 EASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 ++ R HTS A VAV+P I D+RI+ R+ G GGQH NTT+SA+RI HI Sbjct: 301 DSGKRRHTSFAAVAVIPILGDTTSRYQIKDSDLRIERFRSGGPGGQHANTTESAIRIVHI 360 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSERI 306 PTGI + +E+SQH N+ AM VL++RL +E R A + + + +I G+ +I Sbjct: 361 PTGISATSQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNAEHTQSLNEISWGN---QI 417 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y R + D R N + + VL+G +DD I L+ Sbjct: 418 RSYVLHPYRMVKDLRTNYEVSDPDSVLEGDLDDFILNYLS 457 >gi|197294594|ref|YP_001799135.1| Protein chain release factor B [Candidatus Phytoplasma australiense] gi|171853921|emb|CAM11884.1| Protein chain release factor B [Candidatus Phytoplasma australiense] Length = 370 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 171/333 (51%), Gaps = 7/333 (2%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 +I M + D K + + KI+ + QDL T + ++ Sbjct: 33 LNQINELMQKKDFWDDPKKAVATSQKFNDLQEKINTLKHLETNHQDLVTFLDLESN---- 88 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 ++ + K++ + + D+ + IL G GG+E+ + LFRM Sbjct: 89 QNNETAFLEEEIKKLIDAVLNFKIKVFLNQPYDNNNAILIFHPGAGGTESQDWCEMLFRM 148 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y++YA + +K E+L ++ G K + G + +K E GVHR+ RV + + Sbjct: 149 YQKYAQKKNFKTEILDYQSGEEAGIKSATLLVKGAYAYGYLKAEKGVHRLVRVSPFDTNA 208 Query: 196 RVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 + HTS + VLPE E +D+ ED++ D R+SG+GGQHVNTTDSAVRITH+PTG++ Sbjct: 209 KRHTSFVSCDVLPEIKEKIKIDLRQEDLKFDFFRSSGAGGQHVNTTDSAVRITHLPTGLV 268 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V +E+SQ+QNR +A+++L+ +L+ + K+ E + N + + +IR+Y F Sbjct: 269 VSCQNERSQNQNREKALQMLKIKLFQLADKKQKEEHAKNFQGEQKEIGWGSQIRSYVFHP 328 Query: 314 G-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + DHR N +++LE V+ G ID IN LT Sbjct: 329 YKMVKDHRTNQEIFQLEQVMDGNIDVFINGYLT 361 >gi|153814569|ref|ZP_01967237.1| hypothetical protein RUMTOR_00783 [Ruminococcus torques ATCC 27756] gi|317501267|ref|ZP_07959471.1| peptide chain release factor 2 [Lachnospiraceae bacterium 8_1_57FAA] gi|145848063|gb|EDK24981.1| hypothetical protein RUMTOR_00783 [Ruminococcus torques ATCC 27756] gi|316897334|gb|EFV19401.1| peptide chain release factor 2 [Lachnospiraceae bacterium 8_1_57FAA] Length = 316 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 95/315 (30%), Positives = 167/315 (53%), Gaps = 6/315 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + + ++ + +D+ +I + +IE + E E I Sbjct: 1 MKELKGLQDSVKEIEKLYSDYEDMMLLIEMSEEEDSEETAEEIEEELQQFEETFEELRIG 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + I+ + AG GG+E+ + G L+RMY R+A + + +E L + D Sbjct: 61 TL--LTGPYDRDNAIVTLHAGAGGTESCDWTGMLYRMYTRWAEKKGYSIEELDYLEGDVA 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDI 217 G K + + G + ++ E GVHR+ R+ ++G+ TS A+ V +ID++I Sbjct: 119 GVKGVTFEVKGENAYGYLRSEKGVHRLVRISPFNSAGKRQTSFASCDVIPDIEEDIDIEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++IDT R+SG+GGQH+N T SAVRITH+PTGI+V +E+SQH N+ +AM++L+++ Sbjct: 179 NDDDLKIDTYRSSGAGGQHINKTSSAVRITHLPTGIVVQCQNERSQHMNKDKAMQMLKSK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY 335 LY ++++ A + S R ++ + +IR+Y + DHR N + + V+ G Sbjct: 239 LYLMKQQEQAEKMSDIR-GEVRDINFGNQIRSYVMQPYTMVKDHRTNAEVSNVGGVMDGN 297 Query: 336 IDDIINPLLTAHQAK 350 ID IN L+A+ + Sbjct: 298 IDPFINAYLSANTEQ 312 >gi|268316864|ref|YP_003290583.1| LigA [Rhodothermus marinus DSM 4252] gi|262334398|gb|ACY48195.1| LigA [Rhodothermus marinus DSM 4252] Length = 371 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 97/348 (27%), Positives = 168/348 (48%), Gaps = 13/348 (3%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K + A++ D + E I+ S ++ ++Q +++ D+ T++ + Sbjct: 25 KEKIAKLNEERLAPGFWDNPERAREVEKQIAEEESWVAAWEQLRRQADDVQTLLELQQEE 84 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + + E+ + + +E+ L D DD ++ IL I G GG+E+ + L Sbjct: 85 PD--ANLEEEIAREVARLEQQLDELELRSLLTDPDDHRNAILTIHPGAGGTESQDWAEML 142 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+ + VE+L D G K I+G + +K ESGVHR+ R+ + Sbjct: 143 LRMYTRWGERHGYDVELLEYQAGDVAGIKSATLRIAGPYAYGYLKGESGVHRLVRISPFD 202 Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 ASGR HTS A+V V PE + +VDI ++I + T R+ G GGQ+VN ++ VR+ Sbjct: 203 ASGRRHTSFASVFVYPEIDDSIEVDIRPDEIEMQTFRSGGKGGQNVNKVETGVRLIWHGK 262 Query: 252 --------GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 + + E+SQ QNR RA+ +L++R+Y +ER+ E+ R+ Q + Sbjct: 263 LSNGEEARVVAECTEERSQLQNRQRALTMLKSRIYQLEREIREAEKRK-RESQKKKIEWG 321 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +IR+Y F + DHR + ++ V+ G +D I L + + Sbjct: 322 SQIRSYVFQPYTMVNDHRTETKVTDVQAVMDGDLDPFIRAYLLSQVNE 369 >gi|256372525|ref|YP_003110349.1| peptide chain release factor 2 [Acidimicrobium ferrooxidans DSM 10331] gi|256009109|gb|ACU54676.1| peptide chain release factor 2 [Acidimicrobium ferrooxidans DSM 10331] Length = 369 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 98/335 (29%), Positives = 159/335 (47%), Gaps = 18/335 (5%) Query: 25 ESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 + K L+ Y + + I+ D + + D + + Sbjct: 42 DPGVWSDPAKGRELSRRYGTLKDDVELIARLDAMLADSNVAIEMADDDPDLAAEAEDVLT 101 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 + A I L D+ +LEI +G GG++A + + RMYER+A Sbjct: 102 SLAAHLDAIE-------IRSLLAGEFDESDAVLEIHSGAGGTDAQDWAQMMLRMYERWAQ 154 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 R ++ EV ++ + G A + GR + + E GVHR+ R+ +A R TS Sbjct: 155 GRGFEFEVDEVTEGQEAGILSATAIVRGRYAYGLLVAERGVHRLVRISPFDAQHRRQTSF 214 Query: 202 ATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A++ V P +V I +D+RIDT R+SG+GGQHVN TDSAVRITH+PTGI+V +E Sbjct: 215 ASLDVTPLAEDAGEVVIDEKDLRIDTYRSSGAGGQHVNVTDSAVRITHLPTGIVVSCQNE 274 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-I 316 +SQ QNR +AM++L ++L R+ + A ++ +G + ++R+Y + + + Sbjct: 275 RSQLQNRAKAMQILVSKLEQRRREEQRAQLDALSGPRVDVGWAN---QVRSYVLAPYQLV 331 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 DHR ++ VL G +D I L + K Sbjct: 332 KDHRSGYEDRNVQAVLDGRLDPFIEAFLAWRREKH 366 >gi|288803779|ref|ZP_06409207.1| peptide chain release factor 2, programmed [Prevotella melaninogenica D18] gi|302345945|ref|YP_003814298.1| putative peptide chain release factor 2 [Prevotella melaninogenica ATCC 25845] gi|288333766|gb|EFC72213.1| peptide chain release factor 2, programmed [Prevotella melaninogenica D18] gi|302150148|gb|ADK96410.1| putative peptide chain release factor 2 [Prevotella melaninogenica ATCC 25845] Length = 371 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R F E +LR D + E+ + I Sbjct: 1 MITADQLKDIQERTEALHRYLDIDKKRIEFEEEQLRTQAPDFWDDPARAQEQMKKVKDIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + YD+ + ++ + + + + K I LE + + Sbjct: 61 KWVKDYDKARALADEVQLAFDFYKDELVTEEEVDTAYAKVLKVIEGLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ + ++V + + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAQGYRVTISDIQEGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRMEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|121996859|ref|YP_001001646.1| peptide chain release factor 2 [Halorhodospira halophila SL1] gi|121588264|gb|ABM60844.1| bacterial peptide chain release factor 2 (bRF-2) [Halorhodospira halophila SL1] Length = 291 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 109/295 (36%), Positives = 165/295 (55%), Gaps = 14/295 (4%) Query: 59 EQDLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 D ++ D+E + Q ++ + ++ LE + + D + L+I Sbjct: 2 LDDADEMVAMAREEGDAETLEAVQADIQRVAGQVETLE----FRRMFSGEMDTSNAFLDI 57 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A R ++ EV+ + + G K +SG F + Sbjct: 58 QAGSGGTEAQDWAEMLLRMYLRWAEARGFETEVIEVTAGQEAGVKSATIKVSGEYAFGWL 117 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--PLEDIRIDTMRASGSGG 234 + E+GVHR+ R ++ GR HTS ++V V PE E +VDI D+R+D RASG+GG Sbjct: 118 RTETGVHRLVRKSPFDSGGRRHTSFSSVFVSPEIDEENVDIEIDPSDLRVDVFRASGAGG 177 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSA 291 QHVNTT+SAVRITH PTGI+V + +++SQH+NR AM LRA+LY++E +R E Sbjct: 178 QHVNTTESAVRITHEPTGIVVQSQNDRSQHKNRATAMSQLRAKLYELEMQRRRAEAEAQE 237 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G+ +IR+Y Q RI D R + + + VL G++D I L A Sbjct: 238 DTKSDIGWGN---QIRSYVLDQSRIKDLRTGVEIGNTQAVLDGHLDPFIQASLKA 289 >gi|227328400|ref|ZP_03832424.1| peptide chain release factor 2 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 248 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 100/249 (40%), Positives = 144/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+I+AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGQYDSADCYLDIQAGSGGTEAQDWASMLVRMYLRWAEAKGFKTEIIEESDGDVAGTK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I Sbjct: 61 SATIKIIGDYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNRTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 FEMQKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|146296348|ref|YP_001180119.1| peptide chain release factor 2 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409924|gb|ABP66928.1| bacterial peptide chain release factor 2 (bRF-2) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 323 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 118/320 (36%), Positives = 174/320 (54%), Gaps = 10/320 (3%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + I + KI Y + + +DL + +S I ++E I+ E + E Sbjct: 5 QKVLQQIKRLKDKIERYQKLYSQWEDLKVLTQLCIEESNIEMSDELEKDLIDLERKIEEF 64 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 ++ L D + IL I AG GG+EA + L RMY R+AA + +KVE L Sbjct: 65 KLEIL--LNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAAKKGYKVETLDILPG 122 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEID 214 ++ G K + I G + +K E GVHR+ R+ +A+GR HTS A V VLPE + D Sbjct: 123 EEAGIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTD 182 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I ED+ IDT RASG+GGQHVN T+SAVRI HIPTGI+V +E+SQH+NR A+K+L Sbjct: 183 IEIKEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHKNREIALKIL 242 Query: 274 RARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEY 330 +A+L ++ K + + Q IG G+ +IR+Y F + DHR + + +E Sbjct: 243 KAKLLELREKERREKIQKLKGEQTEIGWGN---QIRSYVFCPYTLVKDHRTDAEVGNVEA 299 Query: 331 VLQGYIDDIINPLLTAHQAK 350 V+ G ID IN L + + Sbjct: 300 VMDGEIDVFINAYLKKFRNE 319 >gi|295097429|emb|CBK86519.1| bacterial peptide chain release factor 2 (bRF-2) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 293 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 102/297 (34%), Positives = 162/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + E ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + I G + Sbjct: 58 LDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKIIGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID+DI D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDEDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|154248590|ref|YP_001419548.1| peptide chain release factor 2 [Xanthobacter autotrophicus Py2] gi|154162675|gb|ABS69891.1| peptide chain release factor 2 [Xanthobacter autotrophicus Py2] Length = 322 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 152/317 (47%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + + I + + +L + + I + + + R Sbjct: 1 MQERTTLEDGLGAIDRVLRDLDDNIELIELGEAEGDEGVITEASASLDGLKAELAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+++ + L RMY R+ +KVE++ S Sbjct: 57 -RELEALLSGEADSNDSYLEVHAGAGGTDSQDWAEMLLRMYRRWCERHGFKVELMDESQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID- 214 + G K + G + +K E+GVHR+ R+ +++ R TS A+V V P + Sbjct: 116 EQAGLKSATIQVKGHNAYGWLKTEAGVHRLVRISPFDSNARRQTSFASVDVYPVVDDRIV 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 VDI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTGI +V+ ++SQH+NR A +L Sbjct: 176 VDIKEADVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGIAVVSEGDRSQHKNRATAWNML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RA+LYD+E K+ K IG G +IR+Y + + D R +T + Sbjct: 236 RAKLYDLELKKREAEAAAEQAAKTDIGWG---HQIRSYVLQPYQLVKDLRTGVTSGTPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDPFMQAALAQR 309 >gi|297172547|gb|ADI23517.1| protein chain release factor B [uncultured Gemmatimonadales bacterium HF0770_41L09] Length = 331 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 156/328 (47%), Gaps = 10/328 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + D+ + + + + + + + E E Sbjct: 1 MVQPGFWDSQDQAKATIDESNRLKGWLDPWSSL--DAGVSELTALVELLEEEEDAELDAE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + + + DD + I+ I G GG E+ + G L RMY R++ Sbjct: 59 FTRGLASVEKDLEVLEVRTMLQGEDDHRDAIVTIHPGAGGLESQDWAGMLMRMYTRWSER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R + +EVL ++GG K I G + +K E GVHR+ R+ + R HTS A Sbjct: 119 RGFGIEVLDLQLAEEGGIKSATLEIKGECAYGYLKAEGGVHRLVRISPFDQQSRRHTSFA 178 Query: 203 TVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V + P I++DI D+RIDT RASG+GGQHVN TDSAVRITH PTGI+ E+ Sbjct: 179 SVFIYPLVEDGIEIDIDESDLRIDTYRASGAGGQHVNKTDSAVRITHEPTGIVATCQQER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQH+N+ AMK+LRA LY + ER+ K +IG G+ +IR+Y F + Sbjct: 239 SQHKNKSTAMKMLRAALYQHALQEQERERAVLEATKTEIGFGN---QIRSYVFQPYTMVN 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLT 345 DHR L + ++ V+ G +D I L Sbjct: 296 DHRTELKITDVQGVMDGDLDPFIEAYLK 323 >gi|170070084|ref|XP_001869460.1| peptide chain release factor 1 [Culex quinquefasciatus] gi|167866004|gb|EDS29387.1| peptide chain release factor 1 [Culex quinquefasciatus] Length = 425 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 120/355 (33%), Positives = 195/355 (54%), Gaps = 15/355 (4%) Query: 6 HKQICDLKNRFAEIE--LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K + +++ + ++ +M++ + A +S ++ L Sbjct: 71 QKYLENIRLEYYSLKVLEQMNKQDI--------KRMALLSHVVEMYEQRRIIVDNLSSLA 122 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + + D + E + E L + + +D S ILE+ AG GG Sbjct: 123 EMGAEKDEDMLQLMKEEKEAYTNILRKLDGEIMDGILSM-DEEEDYSSLILEVAAGVGGQ 181 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EA LF ++F MY + + W++E+L + D + GG + I+GR + +KFE+GVH Sbjct: 182 EAMLFAREVFDMYCGFVEFKGWEIEMLQTEDTELGGIRHASMVINGRDAYRFLKFEAGVH 241 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQR+P+TE S R+HTS ATV+VLP E +++ +D++I+T RASG+GGQHVNTTDSA Sbjct: 242 RVQRIPSTEKSARIHTSTATVSVLPRPDEFQIELKDKDLKIETKRASGAGGQHVNTTDSA 301 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI H+PTG+ V +E+SQ +N+ A + L A+L E + N + + +K Q+GS R Sbjct: 302 VRIVHLPTGMAVECQTERSQGKNKEIAKQKLLAKLTQQELESKFNAKQSLKKSQVGSSTR 361 Query: 303 SERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +E+IRTYN+ Q RITDHR+ T + L+ ++G + D++ L H+ K + Sbjct: 362 NEKIRTYNYPQDRITDHRLEGGTTHNLKVFMEGGPPLGDMVEKLRKDHRKKQLKE 416 >gi|259502724|ref|ZP_05745626.1| peptide chain release factor RF2 [Lactobacillus antri DSM 16041] gi|259169369|gb|EEW53864.1| peptide chain release factor RF2 [Lactobacillus antri DSM 16041] Length = 332 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 107/334 (32%), Positives = 168/334 (50%), Gaps = 10/334 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ D K + + + K Y + + + E + E Sbjct: 1 MAQPGFWDDNEKAQQLINDNNDLKEKRDTYVALRDQL--ADLETNLELLELEPDPDLEQE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 A + E + L + D K+ ILEI G GG+EA + L RMY R+A Sbjct: 59 FAASFAKTTEALQQYRLSQLLSEKYDGKNAILEIHPGAGGTEAQDWGEMLLRMYVRWAEQ 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 VE + + G K + I GR F ++ E GVHR+ R+ +++GR HTS A Sbjct: 119 HGLTVETANYEPGEVAGVKSVTLLIKGRNAFGYLRSEKGVHRLVRISPFDSAGRRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE ++VDI D+R+DT R+SG+GGQH+N T+SAVRITH+PTG++ + +E+ Sbjct: 179 SVDVMPELDDSVEVDINPADLRVDTFRSSGAGGQHINKTESAVRITHLPTGLVASSQAER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ NR AM +L+++LY++E ++ A ER+ Q IG G +IR+Y F + Sbjct: 239 SQLLNRQTAMNMLKSKLYELEEEKKAKERAEIEGEQLEIGWG---SQIRSYVFHPYTLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 D+R + + V+ G +D IN L ++ Sbjct: 296 DNRSGYETHNGQAVMDGELDPFINAYLQWKLSQQ 329 >gi|210076204|ref|XP_504279.2| YALI0E22759p [Yarrowia lipolytica] gi|199426952|emb|CAG79876.2| YALI0E22759p [Yarrowia lipolytica] Length = 389 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 125/356 (35%), Positives = 189/356 (53%), Gaps = 14/356 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + ++ S + KL + + + ++ Y + +L ++ Sbjct: 38 KAESMNKEYEALQA--SPNEDQFKDKKLIAKINLLGQVTHELDSYRNSIVQYDELMSMCD 95 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + D EK I++LE LLLP D CI+E+R G GG EA L Sbjct: 96 DPELKKDAEDEIPTVEAEAEKAIKKLET----LLLPTHPYGDIGCIIEMRPGIGGEEACL 151 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F +L MY YA W ++ + + ND GG E++ ++ G G ++ ++ E GVHRVQR Sbjct: 152 FTDNLLNMYTGYADEMGWPYQITNVTRNDKGGITEVILSVDGEGSYNMLQHEGGVHRVQR 211 Query: 188 VPATEASGRVHTSAATVAVLPEAAE-----IDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 VP TE+SGRVHTSAA V VLP+ +E D+ ++RID MRA G+GGQHVN T+S Sbjct: 212 VPVTESSGRVHTSAAAVIVLPQISESSVAADDIQFAPGEVRIDVMRAQGAGGQHVNKTES 271 Query: 243 AVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ HIPT ++V + +SQ QN+ A +LR RL + +R+ A + R Q+ + D Sbjct: 272 AVRLVHIPTKTMVVMQNSRSQRQNKEMAFMILRGRLAEQKRREQAAKSKNARTSQVSATD 331 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTAHQAKMIGSAS 356 RS++IRTYNF Q R+TDHR L+ V+ G +D ++ L + + I Sbjct: 332 RSDKIRTYNFHQNRVTDHRCGY-SGNLDVVMSGKKLDAVLEALEDHFREESIKDLE 386 >gi|332140695|ref|YP_004426433.1| Protein chain release factor B, RF-2 [Alteromonas macleodii str. 'Deep ecotype'] gi|327550717|gb|AEA97435.1| Protein chain release factor B, RF-2 [Alteromonas macleodii str. 'Deep ecotype'] Length = 248 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 139/248 (56%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D+ C ++I++G+GG+EA + L RMY R+ +K E++ SD D G K Sbjct: 1 MFSGPNDENDCYIDIQSGSGGTEAQDWANMLLRMYLRWGEAHGFKTELIEVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 I G F ++ E+GVHR+ R ++ R HTS ++ V PE + Sbjct: 61 SATLRIQGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSSAFVYPEIDDDIDIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQHVN TDSAVRITH PTGI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDTYRASGAGGQHVNRTDSAVRITHEPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 FELQKQNAEKQAMEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|124007003|ref|ZP_01691832.1| peptide chain release factor 2 [Microscilla marina ATCC 23134] gi|123987456|gb|EAY27176.1| peptide chain release factor 2 [Microscilla marina ATCC 23134] Length = 324 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 150/325 (46%), Gaps = 8/325 (2%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 + D + I I +D+ + +L + + Sbjct: 4 QPEFWDDPKAAEKVLKEIKSIKIWTERFDKVQNLWDELEILNEFLEAGEGSETEVTNLFS 63 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 +EK + ELE + D +D + ++EI G GG+E+ + G L RMY + Sbjct: 64 KLEKALDELEFQKM----LSDEEDPLNALIEINPGAGGTESMDWAGMLMRMYIMWGEKNN 119 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +KV ++ + G K + I G + +K E GVHR+ R+ ++ GR HTS A+V Sbjct: 120 YKVREVNYQAGEAAGVKSVTLEIEGDFAYGHLKAEIGVHRLVRISPFDSGGRRHTSFASV 179 Query: 205 AVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 P I+++I DI DT RA G+GGQ+VN ++AVR+ H P+GI+V E+SQ Sbjct: 180 FAYPVVDDTIEIEISPADIEWDTFRAGGAGGQNVNKVETAVRLKHKPSGIIVECQQERSQ 239 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRI 321 QN+ +AMK+LR+RLY VE ++ R+ + D +IR+Y + D R Sbjct: 240 LQNKDKAMKMLRSRLYQVEMEKKNEARAKVEGSK-KRIDFGSQIRSYVLHPYKMVKDLRT 298 Query: 322 NLTLYKLEYVLQGYIDDIINPLLTA 346 ++ VL G + D + L Sbjct: 299 GHERSDVQNVLDGDLSDYMKAFLMQ 323 >gi|297564871|ref|YP_003683843.1| hypothetical protein Mesil_0394 [Meiothermus silvanus DSM 9946] gi|296849320|gb|ADH62335.1| hypothetical protein Mesil_0394 [Meiothermus silvanus DSM 9946] Length = 375 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 96/346 (27%), Positives = 171/346 (49%), Gaps = 9/346 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I ++R E+E+++++ D + + + + Y + + + Q L + Sbjct: 28 DIAGKESRLRELEVKLNDPHLWDNPTEAKAISQEATRLRKAVENYRRLESDLQGLLELWP 87 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + +++ + +++ E ++ + L + + I+ I+ G GG+EA Sbjct: 88 ELSAEERAQMQPELDKAGREL------EDLYHQTLLSFPYAENAAIVTIKPGAGGTEACD 141 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A +KVEV+ + G + G + + E+GVHR+ R Sbjct: 142 WAEMLYRMYTRFAERHGFKVEVVDVEPGAEAGIDLAQFIVRGEYAYGLLSAEAGVHRLVR 201 Query: 188 VPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G+ TS A + V+PE E +V I ED+RID MR+ G GGQ VNTTDSAVR+ Sbjct: 202 PSPFNAQGKRQTSFAALEVMPEVDESVEVAINPEDLRIDVMRSQGKGGQGVNTTDSAVRV 261 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+PTGIMV +SQ +N+ AM +LR++L+++E K+ E + K + + + Sbjct: 262 VHLPTGIMVKCQITRSQQKNKELAMNILRSKLFEIEWKKKQEELARL-KGESRPNEWGSQ 320 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IR+Y + + DHR + E VL G +++++ L + Sbjct: 321 IRSYVLDKQYVKDHRTGEMRHDPENVLDGDLENLVWAGLEWKAGRR 366 >gi|126337707|ref|XP_001368579.1| PREDICTED: similar to Mitochondrial translational release factor 1 [Monodelphis domestica] Length = 447 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 130/360 (36%), Positives = 203/360 (56%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K DL + ++ + D ++ +A ++ + + ++ +DL + Sbjct: 75 QKYAEDLTGEYQRLDRLLHHVSVSDGDRRTMSRRHAELAQFTAIYKEIQESEKAIEDLES 134 Query: 65 VIGDHNSDSEIR--DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N E + +LA E I+++I L E+ L+PK+ DD ILE+ +G T Sbjct: 135 MCKSLNEQDEKQLLELAFEEREVIDQKINRLCQELFQSLVPKEKDDKSDVILEVTSGRTT 194 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W E+L+ + D GG A ISG V+ MK+E Sbjct: 195 GGDICQQFTKEIFEMYQSYSCYKGWNFEILNYTTADYGGLHHAAARISGDSVYEYMKYEG 254 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+D+ + +D+RIDT RA G+GGQHV Sbjct: 255 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDIRVEPKDLRIDTFRAKGAGGQHV 314 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVRI HIPTG++V ++SQ QN+ A ++LRA+LY ++ +++ + RKLQ Sbjct: 315 NTTDSAVRIVHIPTGLVVECQQQRSQIQNKDTAFRLLRAKLYQQTIEKEQSKKQSVRKLQ 374 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TDHRI+ ++ L G +D +I LL + + I Sbjct: 375 VGTRAQSERIRTYNFTQDRVTDHRISYEARDIKEFLCGGRPLDTLIQRLLVSANEEAIVE 434 >gi|39938959|ref|NP_950725.1| protein chain release factor B [Onion yellows phytoplasma OY-M] gi|39722068|dbj|BAD04558.1| protein chain release factor B [Onion yellows phytoplasma OY-M] Length = 369 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 104/341 (30%), Positives = 169/341 (49%), Gaps = 7/341 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I ++ M + K + + K + + KQ DL T+ Sbjct: 25 DIKKTNQTIEKLNYAMQKEDFWKYPQKAVTISQQFNDLQDKKTTLETLKQNYLDLETLFN 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + S ++ L + E+ + K + + + + D + IL G GG+E+ Sbjct: 85 LNESPNKTSALLEEELKNLTKAV----FDFKIKIFLNQSYDINNAILLFHPGAGGTESQD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + LFRMY++YA + +K E+L + G K I G + +K E GVHR+ R Sbjct: 141 WCEMLFRMYQKYAQKKNFKTEILDYQPGEGAGIKSATLLIKGTYAYGYLKAEKGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +A+ + HTS VLPE E ED++ID R+SG+GGQHVNTTDSAVRI Sbjct: 201 ISPFDANSKRHTSFVACDVLPEINEEIKINLKTEDLKIDVFRSSGAGGQHVNTTDSAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTG++V +E+SQ +N+ +A+++L+ +L+ + K+ E + + + Sbjct: 261 THLPTGLVVGCQNERSQIKNKEKALQMLKTKLFQLASKKQKEENAKKFQSDQKENGWGSQ 320 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y F + DHR N +++LE V+ G ID+ IN LT Sbjct: 321 IRSYVFHPYKMVKDHRTNQEIFQLEQVMDGNIDEFINGYLT 361 >gi|317504105|ref|ZP_07962107.1| peptide chain release factor RF2 [Prevotella salivae DSM 15606] gi|315664777|gb|EFV04442.1| peptide chain release factor RF2 [Prevotella salivae DSM 15606] Length = 376 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 163/376 (43%), Gaps = 36/376 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+ R F E +LR D + + + I Sbjct: 1 MITAEQLKDIIERTDALHRYLGIDQKKIEFEEEQLRTQAPDFWDDPKRAEAQMKKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y+ ++ +L + + + + K + +LE + + Sbjct: 61 KWLKGYNACRELADELQLAFDFYKDNMVTEEEVDTDYAKAVKAVEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY+R++ + V+V D D+ G K + T Sbjct: 117 EDAMDAVLKINSGAGGTESQDWAQMLMRMYQRWSESHGYNVKVTDIQDGDEAGIKSVTMT 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVYVDPAKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM +L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMLLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR ++ V+ Sbjct: 297 QLYDRALKKKQAEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTGFQTSDVDAVMD 353 Query: 334 GYIDDIINPLLTAHQA 349 G +D I L A Sbjct: 354 GKLDGFIKAYLMEFAA 369 >gi|322435983|ref|YP_004218195.1| Peptide chain release factor 2 [Acidobacterium sp. MP5ACTX9] gi|321163710|gb|ADW69415.1| Peptide chain release factor 2 [Acidobacterium sp. MP5ACTX9] Length = 375 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 101/351 (28%), Positives = 181/351 (51%), Gaps = 18/351 (5%) Query: 12 LKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 L+ A +E ++++ + L + + +++ + ++ + + + + Sbjct: 28 LRRELAIVEEKIADPTVWADAARSQPLMRDRKRLETLLADDAELARRSDDIEAYFELAKE 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +++ + E +++ + D + I+ + G GG+E+ + Sbjct: 88 GEDTE-------PDLVREIPALVEYADQLESKTMLSGETDLLNAIVTVHPGAGGTESQDW 140 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++KVE+ D D+ G K TISG F + E+GVHR+ R+ Sbjct: 141 AEMLMRMYIRWGERQRFKVEINEIQDGDEAGIKSATFTISGEFAFGLLSGETGVHRLVRI 200 Query: 189 PATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS A+V V PE + +DI +ED+RIDT R+ G GGQHVNTTDSAVRIT Sbjct: 201 SPFDSAKRRHTSFASVFVSPEIDDTIVIDIKVEDLRIDTYRSGGKGGQHVNTTDSAVRIT 260 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSE 304 H+PTG++ +E+SQH+N+ RAMK++R++LY+ E + + + KL+IG G Sbjct: 261 HLPTGLVTGCQNERSQHKNKERAMKMMRSKLYEYELDKKKAATRKIEDSKLEIGFG---S 317 Query: 305 RIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +IR+Y R+ D R + + ++ VL G ++ I L + + + Sbjct: 318 QIRSYVLQPYRMAKDLRTRVEVGDVDKVLDGDLEPFIRGFLRMRREGNLPA 368 >gi|261342293|ref|ZP_05970151.1| peptide chain release factor 2 [Enterobacter cancerogenus ATCC 35316] gi|288315634|gb|EFC54572.1| peptide chain release factor 2 [Enterobacter cancerogenus ATCC 35316] Length = 293 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 162/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + E ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + I G + Sbjct: 58 LDIQAGSGGTEAQDWASMLTRMYLRWAEARGFKTEIIEESEGEVAGLKSVTIKIIGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVNDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|237740862|ref|ZP_04571343.1| peptide chain release factor 2 [Fusobacterium sp. 4_1_13] gi|229431159|gb|EEO41371.1| peptide chain release factor 2 [Fusobacterium sp. 4_1_13] Length = 331 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 11/332 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E E K +E ++ + +S Y++ E D +I S + Sbjct: 2 EKLTFEENFWSDKRKSSEIIKNMNFEKNIVSRYEKLATEIDDEEVLIDFVESGEASFENE 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I K E LL D + I+ I +G GG+EA + L+RMY R+ Sbjct: 62 LQTKHKILKSD---IEEFEINLLLDGEYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRW 118 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 L+ +KV L + D G K + + G + +K E GVHR+ R+ +A+ + HT Sbjct: 119 CNLKGYKVSELDFMEGDSVGVKSVTFLVEGINAYGYLKSEKGVHRLVRISPFDANKKRHT 178 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE E +V+I DIRIDT RASG+GGQHVN TDSAVRITH P+GI+V Sbjct: 179 SFASVEVVPEVDENVEVEINPADIRIDTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQ 238 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG- 314 E+SQ NR AMK+L+++L ++E K+ E + IG G+ +IR+Y F Sbjct: 239 KERSQLSNRETAMKMLKSKLLELEIKKKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYA 295 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N + ++ V+ G IDD IN L Sbjct: 296 LVKDHRTNTEIGNVKAVMDGSIDDFINSYLRW 327 >gi|315452804|ref|YP_004073074.1| peptide chain release factor 2 [Helicobacter felis ATCC 49179] gi|315131856|emb|CBY82484.1| peptide chain release factor 2 [Helicobacter felis ATCC 49179] Length = 363 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 110/341 (32%), Positives = 180/341 (52%), Gaps = 15/341 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L++ +E S+ + +E I ++S E ++L ++ Sbjct: 27 ESLQDTLTALEREQSDPLFWQDKERAASKNQEKVKIERLLSAYQNAKNTLVEARELFELV 86 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 N D + ++ ++ LE + D I+ I+ G GG E+ Sbjct: 87 Q--NDDPSTLAQLFEDAPHLQACVQSLEVGVMLANAHDGRDA----IVSIQPGVGGVESQ 140 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A + +KVE+L + ++ G K + I G V+ MK E+GVHR+ Sbjct: 141 DWGSMLYRMYLRWAERKGFKVELLDYQEGEEAGIKGVAFIIRGINVYGYMKNENGVHRLV 200 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ A+G+ HTS A+V V P +ID+ I +DIRIDT RASG+GGQHVN T+SA+R Sbjct: 201 RMSPFNANGKRHTSFASVQVSPEVDDDIDIVIEDKDIRIDTYRASGAGGQHVNKTESAIR 260 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH+ TGI+V +++SQH+N+ A+K+L++RLY++E R + SA K +IG G Sbjct: 261 ITHLATGIVVQCQNDRSQHKNKAMALKMLKSRLYELELHRQKEQSSAEEKSEIGWG---H 317 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y + +I D R + +E +L G +D ++ +L Sbjct: 318 QIRSYVLAPYQQIKDARSEIAYSNVEAILDGDLDAMMEAVL 358 >gi|319407240|emb|CBI80879.1| peptide chain release factor RF-2 [Bartonella sp. 1-1C] Length = 333 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 108/337 (32%), Positives = 161/337 (47%), Gaps = 16/337 (4%) Query: 29 VDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 + K E + ++ ++ Q +E +L + + N I + Sbjct: 3 WNDARKAQDMMRERQNLEDSMNSTQLFTQTLEECIELIAMGEEENDVEIITEAENTIRQL 62 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKW 145 + + L D LEI AG GG+E+ + L RMY R+A K Sbjct: 63 KSEIDK-----KQIATLLSGEADSNDTYLEIHAGAGGTESQDWASMLLRMYTRWAEQHKM 117 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KVEVL + D ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ Sbjct: 118 KVEVLETHDGEEAGIKSATILVKGHNAYGLLKTESGVHRLVRISPYDSNARRHTSFASIW 177 Query: 206 VLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQH 263 V P E ++D+ D+RIDT RASG+GGQHVNTTDSAVRITHI T I+V +E+SQH Sbjct: 178 VYPVVDENIEIDLSEADVRIDTYRASGAGGQHVNTTDSAVRITHIKTDIVVQCQTERSQH 237 Query: 264 QNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHR 320 +N+ A +LRARLY+ E K+ + K +IG G +IR+Y + + D R Sbjct: 238 KNKATAWSMLRARLYEEELKKREEATNAVEASKTEIGWG---HQIRSYVLQPYQLVKDLR 294 Query: 321 INLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + VL G +D I L + Sbjct: 295 TGVENTDPQTVLNGDLDTFIEAALAQRVHGKKQELKD 331 >gi|295134177|ref|YP_003584853.1| peptide chain release factor 2 [Zunongwangia profunda SM-A87] gi|294982192|gb|ADF52657.1| peptide chain release factor 2 [Zunongwangia profunda SM-A87] Length = 365 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 98/365 (26%), Positives = 173/365 (47%), Gaps = 28/365 (7%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R + E + + D + E + Sbjct: 1 MITTDQVKDITTRIDNLQVHLNIEQKQIEIQNEEEKTFDPSFWDNPSEAEEFMKTLKGKK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 ++ Y+ K ++L ++ +N + I + ELE + + + Sbjct: 61 KWVNDYNVAKSGLEELQVLLEFYNEGEAEESDVIKQYQKILDVVEELE----FKNMLSEE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 DD S +L+I AG GG+E+ + L RMY +A + +K++ L+ + D G K + Sbjct: 117 GDDLSAVLQITAGAGGTESCDWAQMLMRMYLMWAEKQGFKIKELNYQEGDVAGIKTVTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I DI I Sbjct: 177 IEGDYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDTIEIEINPADIEIT 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SG+GGQ+VN ++ V++ H PTGI + S +SQH NR RAM++L+++LY++E ++ Sbjct: 237 TARSSGAGGQNVNKVETKVQLVHHPTGIQISCSETRSQHDNRNRAMQMLKSQLYEIELEK 296 Query: 285 MANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 +R K +I G +IR Y + + D R ++ V+ G+ID + Sbjct: 297 QREQREDIEASKKKIEWG---SQIRNYVMHPYKLVKDVRTAEETGNVDSVMDGHIDQFLK 353 Query: 342 PLLTA 346 L Sbjct: 354 AYLMM 358 >gi|304311879|ref|YP_003811477.1| Peptide chain release factor 2 [gamma proteobacterium HdN1] gi|301797612|emb|CBL45833.1| Peptide chain release factor 2 [gamma proteobacterium HdN1] Length = 300 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 104/305 (34%), Positives = 166/305 (54%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + I + + ++L ++ + N +S + D+ + + + + Sbjct: 2 VGTIDSVSTRLRGARELLDMVVEENDESMLGDVQKEIDGIEADVAKM-----EFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D SC L+I+AG+GG+EA + L RMY R+ +K E++ S + G K Sbjct: 57 ETDANSCYLDIQAGSGGTEAQDWADMLLRMYLRWGEDHGFKTELVEVSAGEVAGIKSATI 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G F ++ E+GVHR+ R ++ R HTS ++V V PE + ++I D+++ Sbjct: 117 HLEGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSSVFVSPEIDDNIHIEINPADLKV 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN T+SA+RITH+P+GI+V S++SQH+NR +AMK LR++LY++E + Sbjct: 177 DTYRASGAGGQHVNRTESAIRITHVPSGIVVQCQSDRSQHKNRDQAMKQLRSKLYEMEMQ 236 Query: 284 RMANE--RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + E R + K+ IG G +IR+Y Q R+ D R N+ E VL G ID I Sbjct: 237 KRYVEKMRQEDSKMDIGWG---SQIRSYVLDQSRVKDLRTNVETSNTEAVLDGEIDLFIK 293 Query: 342 PLLTA 346 L A Sbjct: 294 ASLKA 298 >gi|239995055|ref|ZP_04715579.1| Protein chain release factor B, RF-2 [Alteromonas macleodii ATCC 27126] Length = 248 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 139/248 (56%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D+ C ++I++G+GG+EA + L RMY R+ +K E++ S+ + G K Sbjct: 1 MFSGPNDENDCYIDIQSGSGGTEAQDWANMLLRMYLRWGEAHGFKTELIEVSEGEVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 + G F ++ E+GVHR+ R ++ R HTS ++ V PE + Sbjct: 61 SATLRVQGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSSAFVYPEIDDDIDIEINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQHVN TDSAVRITH PTGI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDTYRASGAGGQHVNRTDSAVRITHEPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 FELQKQNAEKQAMEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|57239093|ref|YP_180229.1| peptide chain release factor 2 [Ehrlichia ruminantium str. Welgevonden] gi|57161172|emb|CAH58086.1| peptide chain release factor 2 [Ehrlichia ruminantium str. Welgevonden] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 105/347 (30%), Positives = 176/347 (50%), Gaps = 18/347 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I +L + ++ + +++ + + E A IS I+ + +++ Q +L + Sbjct: 26 DIDNLTSLLVDLNTKCADTSLWNDNLTAHHVLSERARISKIVGLFTELEEEYQYYNELLS 85 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 VI S D ++ + ++E + L D D C +EI++G GG+E Sbjct: 86 VI------SNDSDSLLDDLSKGLEALKEKVKKKEVECLFSDEADQNDCFIEIQSGAGGTE 139 Query: 125 AALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 + + L RMY R+A +K +V+ D ++ G K + + G + K ESG+H Sbjct: 140 SNDWSNMLLRMYIRWAEIYHNFKTQVVYKLDGEETGVKSAIIKVIGYNAYGWSKTESGIH 199 Query: 184 RVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ ++ + HT+ A+V V P D+ I +D+RIDT RASG+GGQHVN T+S Sbjct: 200 RLVRISPFNSNAKRHTTFASVLVSPVTNENFDIQIHDKDLRIDTYRASGAGGQHVNKTES 259 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGS 299 AVRITHIP+GI+V + +SQHQN A +LR+RLY ++ + + + ++ IG Sbjct: 260 AVRITHIPSGIVVQCQNNRSQHQNLGEAYNLLRSRLYQLKLQEKEKKMAQEHSQRCDIGW 319 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 G+ +IR+Y + + D R + VL G +D I LT Sbjct: 320 GN---QIRSYVMHPYQMVKDIRTGYETGNVNSVLDGDLDAFIIATLT 363 >gi|169628533|ref|YP_001702182.1| peptide chain release factor 1 [Mycobacterium abscessus ATCC 19977] gi|238688924|sp|B1MLV1|RF1_MYCA9 RecName: Full=Peptide chain release factor 1; Short=RF-1 gi|169240500|emb|CAM61528.1| Probable peptide chain release factor 1 (RF-1) [Mycobacterium abscessus] Length = 356 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 141/336 (41%), Positives = 192/336 (57%), Gaps = 17/336 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTV 65 I + AE+E ++++ + +SPI++ + + + Sbjct: 7 IDAMLAEHAELEKQLADPALHADAAAARKAGRRFAMLSPIVATHRKLATARDDLATAREL 66 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D S ++ E I ELE +++ +L P+D D +LE+++G GG E+ Sbjct: 67 SADDPSFADEVTEL-------ESSIAELETQLSDMLAPRDPHDGDDILLEVKSGEGGEES 119 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-----SGRGVFSRMKFES 180 ALF DL RMY RYA WKV VL +++D GGYK+ I S GV+SR+KFE Sbjct: 120 ALFAADLARMYIRYAERHGWKVTVLDETESDLGGYKDATLAIASKGDSADGVWSRLKFEG 179 Query: 181 GVHRVQRVPATEASGRVHTSAATV-AVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 GVHRVQRVP TE+ GRVHTSAA V ++ I D+RID R+SG GGQ VNT Sbjct: 180 GVHRVQRVPVTESQGRVHTSAAGVLVYPEPEEVEEIQIDESDLRIDVYRSSGKGGQGVNT 239 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVRITH+PTGI+V +E+SQ QN+ RAM+VL ARL + ++ + SA R QI Sbjct: 240 TDSAVRITHLPTGIVVTCQNERSQLQNKARAMQVLAARLQALAEEQAQADASAGRASQIR 299 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 + DRSERIRTYNF + RITDHR+ + L+ VL G Sbjct: 300 TVDRSERIRTYNFPENRITDHRVGFKAHNLDQVLDG 335 >gi|269140268|ref|YP_003296969.1| protein chain release factor B [Edwardsiella tarda EIB202] gi|267985929|gb|ACY85758.1| protein chain release factor B [Edwardsiella tarda EIB202] Length = 289 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 97/294 (32%), Positives = 156/294 (53%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + + + A + ++ + + D C L+I Sbjct: 2 EDVSGLLELAVEADDEETFNEAV-----AELDLLDVKLGQLEFRRMFSGEYDSADCYLDI 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ S+ + G K ISG + + Sbjct: 57 QAGSGGTEAQDWASMLLRMYLRWAESKGFKTEIIEESEGEVAGLKSATIKISGDYAYGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQ 235 + E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+GGQ Sbjct: 117 RTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ ER + Sbjct: 177 HVNKTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAERQQMED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R ++ + VL G +D I L A Sbjct: 237 TKSDIGWG---SQIRSYVLDDSRIKDLRTSVETRNTQAVLDGDLDRFIEASLKA 287 >gi|254456112|ref|ZP_05069541.1| peptide chain release factor 2 [Candidatus Pelagibacter sp. HTCC7211] gi|207083114|gb|EDZ60540.1| peptide chain release factor 2 [Candidatus Pelagibacter sp. HTCC7211] Length = 326 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 105/332 (31%), Positives = 171/332 (51%), Gaps = 16/332 (4%) Query: 23 MSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M E+ + + +E +++ +K + D+ + + + + +++ Sbjct: 1 MLEANFWQDKNNSKNIIKEKKLYEDLLNIHKASIEKLIDLNDISELAAEEENQAVQKEIL 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 K++R+L + D C +EI AG GG+E+ + L RMY ++ Sbjct: 61 -----QNIKDLRDLVKTNEIKCFLSNETDSLDCYIEIHAGAGGTESQDWAEMLRRMYLKW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K ++S D+ G K I G VF +K ESG+HR+ R+ ++ R HT Sbjct: 116 ADQKNFKSNLISEHKGDEAGIKSSTIKIEGDYVFGWLKKESGIHRLVRISPFDSGARRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A++ V P E +++I +D+RIDT R+SG+GGQHVNTTDSAVRITHIP+ I+V Sbjct: 176 SFASIWVYPVVDENINIEIIEKDLRIDTYRSSGAGGQHVNTTDSAVRITHIPSKIVVQCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQH+N+ + +L+ARLYD E K+ + N K +IG G +IR+Y R Sbjct: 236 NERSQHKNKETCINMLKARLYDYEIKKKEQKNQNTENSKSEIGWG---HQIRSYVLQPYR 292 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + D+R N + +L G ID + L Sbjct: 293 LVKDNRTNFESTNPDKILDGEIDGFLEQSLYQ 324 >gi|255074407|ref|XP_002500878.1| predicted protein [Micromonas sp. RCC299] gi|226516141|gb|ACO62136.1| predicted protein [Micromonas sp. RCC299] Length = 428 Score = 197 bits (500), Expect = 3e-48, Method: Composition-based stats. Identities = 82/361 (22%), Positives = 151/361 (41%), Gaps = 21/361 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI---SIYDQKKQEEQDLHT 64 + L A+++ SE D IK A ++ ++ ++ + Sbjct: 55 DVERLAATVADLDAAASEGTLWDDPIKAKAVMAELADAKEQLATARGFENLLGDAAVALE 114 Query: 65 VIGDHNSDSE------------IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 +I D E+ + ++ L D Sbjct: 115 MIDAEREDDSLSGAAANDASAGPDPTILAELSDACDNLERQLDKWEVRRLLGGKYDAMPA 174 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 ++ + AG GG++A + L RMY + R + + S+ ++ G K + + GR Sbjct: 175 LVNVYAGAGGTDAQDWAEMLERMYRGWCNSRGFTWRTVERSEGEEAGLKSVTFEVQGRFA 234 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVA---VLPEAAEIDVDIPLEDIRIDTMRA 229 + ++ E G HR+ R + TS A V VL E + ++ + D+ I TMR+ Sbjct: 235 YGYLRSERGTHRLVRQSPFKKDATRQTSFAAVEVTPVLDEGSVEELTLRDSDLEISTMRS 294 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 G+GGQ+VN ++AVRI H+PTGI V E+SQ N+ + + L+A+L V ++ A + Sbjct: 295 GGAGGQNVNKVETAVRIKHVPTGITVRCEEERSQAANKAKGLARLKAKLVAVAEEQRAAD 354 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +A R + + ++IR Y F + D R ++ V+ G +D+ ++ L Sbjct: 355 VAAIRGDAVR-AEWGQQIRNYVFHPYKMVKDVRTGKETSDVDGVMSGDLDEFMDEFLRWK 413 Query: 348 Q 348 + Sbjct: 414 R 414 >gi|146328937|ref|YP_001209831.1| peptide chain release factor 2 [Dichelobacter nodosus VCS1703A] gi|146232407|gb|ABQ13385.1| peptide chain release factor 2 [Dichelobacter nodosus VCS1703A] Length = 305 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 158/301 (52%), Gaps = 13/301 (4%) Query: 52 YDQKKQEEQDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 D Q D + + + +D E+ A++++ ++K + LE + + D Sbjct: 8 LDNIHQGLNDARELMALAEDENDEELVQSARLDIERLQKSVEILE----FRRMFSGELDA 63 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 + L+I++G+GG+EA + L RMY R+ + + E+L + D G K +G Sbjct: 64 NNAFLDIQSGSGGTEAQDWAEMLERMYLRWGEAKGFTTELLEETPGDVAGIKSATIRFTG 123 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMR 228 + +K E GVHR+ R +A+ R HTS A V V PE + I++DI D+RID R Sbjct: 124 EYAYGWLKTEIGVHRLVRKSPFDANNRRHTSFAAVFVSPEIDDAIEIDINPADLRIDVYR 183 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQHVN T+SAVRITH+PTG +V + +SQHQN+ M+ LRA+LY +E + + Sbjct: 184 ASGAGGQHVNRTESAVRITHLPTGTVVQSQDSRSQHQNKQTCMRHLRAKLYQLELHKRSE 243 Query: 288 ERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + K IG G+ +IR+Y Q RI D R + VL G +D I L Sbjct: 244 SAQALEDSKSDIGWGN---QIRSYVLDQQRIKDLRTGYETSNTQAVLDGDLDPFIQESLK 300 Query: 346 A 346 Sbjct: 301 Q 301 >gi|296114415|ref|ZP_06833069.1| peptide chain release factor 2 [Gluconacetobacter hansenii ATCC 23769] gi|295979176|gb|EFG85900.1| peptide chain release factor 2 [Gluconacetobacter hansenii ATCC 23769] Length = 322 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 161/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E ++ I + + ++ +L + + + E+ Sbjct: 1 MRERTLLANQIEGVQKLEGDVRDTIELVELAEMEGDGDVVAEGVLALRALAEEA-----K 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D C LE+ AG GG+EA + L RMY R+A +KV ++ SS+ Sbjct: 56 RRETESLLSGEADGNDCYLEVNAGAGGTEAQDWAEMLLRMYTRWAEQHGYKVTLMESSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 + G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V P I+ Sbjct: 116 EQAGLKSATIQVSGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWVYPVIDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI D+R+DT RASG+GGQHVN T+SA+RITHIPTGI+V +++SQH+NR AM +L Sbjct: 176 IDINEADLRVDTFRASGAGGQHVNKTESAIRITHIPTGIVVACQTDRSQHRNRATAMAML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +AR+Y+ E +R A ++ K IG G +IR+Y + + + D R N+ Sbjct: 236 KARMYEQELQRREAAAAQTEAAKTDIGWG---HQIRSYVLAPYQLVKDLRTNMEKTNPGA 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L A Sbjct: 293 VLDGDLDDFMAASLAAQ 309 >gi|262341278|ref|YP_003284133.1| peptide chain release factor 1 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272615|gb|ACY40523.1| peptide chain release factor 1 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 361 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 137/348 (39%), Positives = 215/348 (61%), Gaps = 12/348 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQDLH 63 +++ K F EI + + + K + +S Y++K Q+ Sbjct: 8 QKLEGSKKEFYEISKSIIQPNIISDQKKYKILLKKYLKLEKIVSLYEKYNKKLALLQEAD 67 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP------KDTDDDKSCILEIR 117 ++ ++SD+++++LA IE I + + +E E L+ + T++ ++ I+E+R Sbjct: 68 FILK-NDSDADLKELASIEKYKILENLSSIEKESYDLIFSLSNETEETTENHRNAIVELR 126 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-VFSRM 176 +GTGG EA LFV D+ RMY Y WK +++ + GYKEI+ ++G+ V+ + Sbjct: 127 SGTGGDEACLFVEDILRMYTMYFKKSGWKYKIIHAQKGGIKGYKEIILDVNGKEGVYGNL 186 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 KFESGVHRVQR+P TE+ GRVHTSA TVAVLP+ +I+V+I L DI+ +T R+SG+GGQH Sbjct: 187 KFESGVHRVQRIPKTESQGRVHTSAITVAVLPQVKDIEVNINLSDIKKETFRSSGAGGQH 246 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SAVR+TH+P+ I V E+SQH+N +A+ VLR+R+Y E+++ E S RK Sbjct: 247 VNKTESAVRLTHLPSKITVECQEERSQHKNFEKAINVLRSRIYQNEKEKRLKEISIKRKS 306 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343 + +GDRS +IRTYN+ + R+TDHRI+ ++Y L + G I ++IN L Sbjct: 307 LVSTGDRSVKIRTYNYPKSRVTDHRIHKSIYDLAGFMNGNIQEMINFL 354 >gi|296104552|ref|YP_003614698.1| peptide chain release factor 2 [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295059011|gb|ADF63749.1| peptide chain release factor 2 [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 293 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 162/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + E ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + I G + Sbjct: 58 LDIQAGSGGTEAQDWASMLMRMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKIIGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDEDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTG++ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|51598335|ref|YP_072523.1| peptide chain release factor 2 [Borrelia garinii PBi] gi|51572906|gb|AAU06931.1| peptide chain release factor 2 [Borrelia garinii PBi] Length = 350 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 111/342 (32%), Positives = 180/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++++ + E + + + + E A S + +KI +++ + +DL + Sbjct: 14 KEIQDKIEKYEKEIHQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIV 73 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ +I L + ++ L K+ D S L I +G GG+EA +V Sbjct: 74 ENEKDINSLEIEFNVLEKQYKNLLTI-----SYFKEELDINSAFLTIHSGAGGTEACDWV 128 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K I I G + +K E G+HR+ R+ Sbjct: 129 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSITIEIKGEYAYGLLKSEVGIHRLIRIS 187 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 188 PFDAAKKRHTSFASVFVDPVIDEKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 247 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 248 IETGIVTQSQSDRSQHKNKDMAMKVLKSRLYEYYKNKEDKKNKSKQEVKKEISWGN---Q 304 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 305 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 346 >gi|320535245|ref|ZP_08035369.1| peptide chain release factor 2 [Treponema phagedenis F0421] gi|320147898|gb|EFW39390.1| peptide chain release factor 2 [Treponema phagedenis F0421] Length = 320 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 161/316 (50%), Gaps = 15/316 (4%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 + + + S++ + + + + +DL + + + D ++ D + + +L Sbjct: 1 MSELKVLRSRVEPWRELQTDIEDLQALYDLAEEAEDEQMTDEIDSVYQKLSERFEKLNVL 60 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 D L I AG GG+EA + L RMY R+A +K E L + D Sbjct: 61 HL----LSGEVDANDAFLTIHAGAGGTEACDWAQMLTRMYLRWAERNDYKTETLDMLEAD 116 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDV 215 GG K I +SG F +K E+G+HR+ R+ +++ R HTS +V V P I+V Sbjct: 117 -GGIKSITLKVSGEYAFGFLKGENGIHRLVRISPFDSNARRHTSFTSVYVFPVLDDTIEV 175 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 +I ED+R+DT RA G+GGQHVN TDSAVR+TH+PTGI+V +E+SQ NR AM +L+ Sbjct: 176 EIRPEDLRVDTYRAGGAGGQHVNKTDSAVRLTHLPTGIVVACQNERSQISNRATAMAILK 235 Query: 275 ARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYV 331 ARLY+ R+ + A K I G+ +IR+Y F + DHR ++ V Sbjct: 236 ARLYEYYREEKEKDNQKFAAEKKDISWGN---QIRSYVFQPYTMVKDHRTKYETGNIQAV 292 Query: 332 LQGYIDDIINPLLTAH 347 + G ID + L + Sbjct: 293 MDGDIDGFMEEYLQKN 308 >gi|312147930|gb|ADQ30589.1| peptide chain release factor 2 [Borrelia burgdorferi JD1] Length = 358 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 22 NEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 81 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 82 ENEKDTNGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 136 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 137 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 195 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 196 PFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 255 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 256 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 312 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 313 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 354 >gi|300869767|ref|YP_003784638.1| peptide chain release factor RF-2 [Brachyspira pilosicoli 95/1000] gi|300687466|gb|ADK30137.1| peptide chain release factor RF-2 [Brachyspira pilosicoli 95/1000] Length = 312 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 99/317 (31%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + I I + +L + + N ++L + + Sbjct: 1 MKERMLLLDKIEPIENLIKNANNIYELVEMAIESNDTEMEKELETECIELQKVFNE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D K+ L + AG GG+E+ + L RMY R+ + VE Sbjct: 57 -LETKNLFSGEFDSKNAYLTLNAGAGGTESCDWASMLSRMYVRFCERHGFTVETTDELPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 D+ G K+I + G + ++ E GVHR+ R+ +A+ + HTS V+V+P+ E + Sbjct: 116 DEAGIKQISFYVQGLYAYGYLRSEIGVHRLVRISPFDANAKRHTSFVAVSVMPDIDEDIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V+I D+RIDT RASG+GGQHVN T SA+RITHIPT I+V +E+SQH N+ AMK+L Sbjct: 176 VEINQADLRIDTYRASGAGGQHVNKTSSAIRITHIPTNIVVQCQAERSQHNNKDMAMKML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +A+LY +E++++ E+ K I G+ +IR+Y F + + D R + Sbjct: 236 KAKLYQLEKEKLDKEKQKIAGEKTDIAWGN---QIRSYVFQPYQMVKDLRTGHETGNMNS 292 Query: 331 VLQGYIDDIINPLLTAH 347 V+ G ID+ I+ L Sbjct: 293 VMDGNIDEFISAYLKQQ 309 >gi|304389757|ref|ZP_07371716.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326933|gb|EFL94172.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 376 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 6/345 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L + A++ + + D + ++S + + + + D+ ++ Sbjct: 28 ELLTQKIADLTQQAAAPDLWDDQEHAQKVTQSLSAAQADLQRLQKMRARIDDMEALVELG 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E RD + + +++ + + L D++ ++ IR+G GG +AA F Sbjct: 88 AEESGEDRDAILADAEQTYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + +VL +S ++ G K + + + + E+G HR+ RV Sbjct: 148 AQMLLRMYLRYCERHHYATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARV 207 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A V V+P +++P DI+ID R+SG GGQ VNTTDSAVR+T Sbjct: 208 SPFNAAGKRQTSFAAVEVIPLIETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLT 267 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+++ EKSQ QNR AM+VL++RL + ++ +++ S +++ Sbjct: 268 HLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLMLRHQQEHDKKKELAGDVKAS--WGDQM 325 Query: 307 RTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R+Y + Q + D R + V G +D I+ + + + Sbjct: 326 RSYFLYGQQLVKDLRTGYESGNPDSVFDGDLDGFIDAAIRWRKHQ 370 >gi|118088382|ref|XP_419682.2| PREDICTED: similar to Mitochondrial translational release factor 1-like [Gallus gallus] Length = 394 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 142/318 (44%), Positives = 213/318 (66%), Gaps = 5/318 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + ++I K++E QD + S+ ++R LA+ E+++ E+EI EL+++I LL+P Sbjct: 75 ELAARIQRLRDKERELQDTRELALQDESE-DLRKLAEREIVSCEEEIAELKHQIVLLLIP 133 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ++E+ AG GG EA LF ++F MY RYAA +KWK E+L ++ GG + Sbjct: 134 SEETDNSDLVMEVTAGVGGQEAMLFTSEIFDMYRRYAAYKKWKFEILEYFPSEIGGLRHA 193 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 VA+I+G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ E+++ I +D+R Sbjct: 194 VASIAGLDAYKYMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDLR 253 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 I+T RASG+GGQHVNTTDSAVRI HIPTG+ E+SQ +N+ +AM++L A+LY+++ Sbjct: 254 IETKRASGAGGQHVNTTDSAVRIVHIPTGVTSECQQERSQIRNKEKAMQMLCAKLYNIKL 313 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + +R++ RK+QIG+ RSE+IRTYNF Q RITDHRI+ +++ E + G +D++I Sbjct: 314 EEENKKRNSARKIQIGTKGRSEKIRTYNFPQDRITDHRISRSVHHTECFMLGEEMLDEMI 373 Query: 341 NPLLT-AHQAKMIGSASE 357 L A ++ SE Sbjct: 374 KTLKEYADYESLMEIISE 391 >gi|312149296|gb|ADQ29367.1| peptide chain release factor 2 [Borrelia burgdorferi N40] Length = 359 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 108/342 (31%), Positives = 178/342 (52%), Gaps = 14/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ + + E +++ + + E A S + +KI +++ + +DL + Sbjct: 23 NEIQAKIEKYEKEINQKNFWNDPKRAQEVIKAQSILKNKIDPWEELINKIKDLSDLCEIA 82 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ + L ++ L K+ D + L I +G GG+EA +V Sbjct: 83 ENEKDTSGLEIEFNTLEKQYKDLLTI-----SYFKEELDANNAFLTIHSGAGGTEACDWV 137 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 138 AMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRIS 196 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITH Sbjct: 197 PFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITH 256 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSER 305 I TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ + Sbjct: 257 IETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---Q 313 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 IR+Y F + DHR V+ G ID+ I L Sbjct: 314 IRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 355 >gi|307941920|ref|ZP_07657273.1| peptide chain release factor 2 [Roseibium sp. TrichSKD4] gi|307774826|gb|EFO34034.1| peptide chain release factor 2 [Roseibium sp. TrichSKD4] Length = 322 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 156/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + +Q + +L + S I+D +K Sbjct: 1 MRERQQLDDGINGVKGLEQDLADNMELIELGELEGDQSVIKDAEDALRGLKDKVNE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D LEI +G GG+E+ + L RMY R+A R +KVE+L D Sbjct: 57 -LQLQSLLSGEADGNDTYLEINSGAGGTESQDWASMLLRMYRRWAEKRGFKVELLEYHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + MK ESGVHR+ R+ +++ R HTS ++ V P I+ Sbjct: 116 EEAGIKSATLLIKGENAYGWMKTESGVHRLVRISPYDSNARRHTSFSSAWVYPVIDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +++ D RIDT RASG+GGQHVNTTDSAVRITH PTGI+V SE+SQH+NR A +L Sbjct: 176 IEVNESDCRIDTYRASGAGGQHVNTTDSAVRITHQPTGIVVQCQSERSQHKNRATAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +ARLY+ E K+ +A K IG G +IR+Y + + D R + Sbjct: 236 KARLYEQELKKREEAANAEAAGKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTSPGD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGALDPFMEAALAQR 309 >gi|298346504|ref|YP_003719191.1| peptide subunit release factor RF2 [Mobiluncus curtisii ATCC 43063] gi|298236565|gb|ADI67697.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 43063] Length = 376 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 6/345 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L + A++ + + D + ++S + + + + D+ ++ Sbjct: 28 ELLTQKIADLTQQAAAPDLWDDQEHAQKVTQSLSAAQADLQRLQKMRARIDDMEALVELG 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E RD ++ + ++ + + L D++ ++ IR+G GG +AA F Sbjct: 88 AEESGEDRDAILVDAEQTYETLKRDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + +VL +S ++ G K + + + + E+G HR+ RV Sbjct: 148 AQMLLRMYLRYCERHHYATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARV 207 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A V V+P +++P DI+ID R+SG GGQ VNTTDSAVR+T Sbjct: 208 SPFNAAGKRQTSFAAVEVIPLIETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLT 267 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+++ EKSQ QNR AM+VL++RL + ++ +++ S +++ Sbjct: 268 HLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLMLRHQQEHDKKKELAGDVKAS--WGDQM 325 Query: 307 RTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R+Y + Q + D R + V G +D I+ + + + Sbjct: 326 RSYFLYGQQLVKDLRTGYESGNPDSVFDGDLDGFIDAAIRWRKHQ 370 >gi|296128915|ref|YP_003636165.1| peptide chain release factor 1 [Cellulomonas flavigena DSM 20109] gi|296020730|gb|ADG73966.1| peptide chain release factor 1 [Cellulomonas flavigena DSM 20109] Length = 392 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 143/351 (40%), Positives = 200/351 (56%), Gaps = 22/351 (6%) Query: 7 KQICDLKN---RFAEIELRMSESPS---VDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +Q+ ++ A+IE +++ +L YA + ++ + + Sbjct: 31 EQLDAVEAMLAEHAQIERDLADPAVHADAARARRLGRRYAELGRVVQAYRQWRAAADDA- 89 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + EV A++ E ++ +L+P+D DD + ILEI+AG Sbjct: 90 ------QAAAELAAEDASFATEVPALQAAADEAAERLHRVLVPRDPDDGRDVILEIKAGE 143 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVF 173 GG E+ALF GDL RMY RYA + W V+VL ++++D GG K+ + GV+ Sbjct: 144 GGEESALFAGDLLRMYTRYAERQGWSVQVLDATESDLGGVKDAQVAVKARAAGPPEDGVW 203 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 + +K+E GVHRVQRVP TE+ GR+HTSAA V V PE + DVDI D+RID R+SG Sbjct: 204 AHLKYEGGVHRVQRVPVTESQGRIHTSAAGVMVFPEADDDGDVDIDQNDLRIDVYRSSGP 263 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQ VNTTDSAVRITH+PTGI+V+ +EKSQ QNR +AM+VLRARL ++ A S Sbjct: 264 GGQSVNTTDSAVRITHVPTGIVVSMQNEKSQLQNREQAMRVLRARLLAARQEEAAAAASE 323 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 R+ Q+ + DRSERIRTYNF + RI DHR Y L+ VL G + +I Sbjct: 324 ARRSQVRTVDRSERIRTYNFPENRIADHRTGYKAYNLDQVLDGDLGPVIAS 374 >gi|303236882|ref|ZP_07323461.1| putative peptide chain release factor 2 [Prevotella disiens FB035-09AN] gi|302483050|gb|EFL46066.1| putative peptide chain release factor 2 [Prevotella disiens FB035-09AN] Length = 371 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 20/351 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K F E +LR + + E+ + I I Y+ K + +L Sbjct: 23 IDKKKIEFEEEQLRTQAPDFWEDAERAQEQMKKVKGIEKWIKGYENVKTQADELQLAFDF 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + +I LE + +D C+++I +G GG+E+ + Sbjct: 83 YKDELVTEEDVDTAYAKVITDIENLELMNM----LRQEEDPMECVMKINSGAGGTESQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQR 187 L RMY RY +KV + + D+ G K + G F +K E+GVHR+ R Sbjct: 139 ASMLMRMYMRYGEQHGYKVTIADIQEGDEAGIKSVTMKFEGGEYAFGFLKSENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P I+V + + DT R+ G+GGQ+VN +S VR+ Sbjct: 199 VSPFNAQGKRMTSFASVFVSPLIDDTIEVFVDPARVSWDTFRSGGAGGQNVNKVESGVRL 258 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKL 295 ++ ++ + + Q +NR +AM++L+++LYD K+ ++ K Sbjct: 259 RYMYQDPDTGEEEEILIENTETRDQPKNRAKAMQLLKSQLYDRAMKKRMEAQAKVEASKK 318 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G ID I L Sbjct: 319 KIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMDGKIDGFIKAYLME 366 >gi|107103215|ref|ZP_01367133.1| hypothetical protein PaerPA_01004284 [Pseudomonas aeruginosa PACS2] gi|254236611|ref|ZP_04929934.1| peptide chain release factor 2 [Pseudomonas aeruginosa C3719] gi|313109107|ref|ZP_07795079.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa 39016] gi|126168542|gb|EAZ54053.1| peptide chain release factor 2 [Pseudomonas aeruginosa C3719] gi|310881581|gb|EFQ40175.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa 39016] Length = 300 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 100/305 (32%), Positives = 159/305 (52%), Gaps = 12/305 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + + +DL + + + + + D+A E + + + + Sbjct: 2 VETLDDLTSGLADSRDLLDMAVEEDDEGAVDDVANEVERLREILEK-----LEFRRMFSG 56 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + L+I+AG+GG+EA + L RMY R+A + ++ S+ + G K Sbjct: 57 EMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDATIIELSEGEVAGIKGATV 116 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 I G F ++ E GVHR+ R ++ R HTS V V PE + +++I D+RI Sbjct: 117 HIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFTAVFVSPEIDDNIEIEINPADLRI 176 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY++E + Sbjct: 177 DTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYELEMQ 236 Query: 284 RM--ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + A++ + K IG G +IR+Y Q RI D R + + VL G +D+ + Sbjct: 237 KRTAASQALEDSKSDIGWG---HQIRSYVLDQSRIKDLRTGIERSDCDKVLDGDLDEYLE 293 Query: 342 PLLTA 346 L Sbjct: 294 ASLKQ 298 >gi|166031017|ref|ZP_02233846.1| hypothetical protein DORFOR_00698 [Dorea formicigenerans ATCC 27755] gi|166029284|gb|EDR48041.1| hypothetical protein DORFOR_00698 [Dorea formicigenerans ATCC 27755] Length = 318 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 99/313 (31%), Positives = 160/313 (51%), Gaps = 9/313 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + + I + + L ++ + S ++++ + E + Sbjct: 1 MKELKDLQEHLKVIHALYSEYDDICTLIEMVDEEEDRSMVKEIEKDIAHFEEDFEK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D + I+ + AGTGG+EA +V L+RMY R+ + + V+VL D Sbjct: 57 -LRIETLLSGEYDSCNAIMTLHAGTGGTEACDWVNMLYRMYTRWFQTKGFSVQVLDYLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV 215 D G K I + G + +K E GVHR+ R+ ++G+ TS A+ V+P+ E Sbjct: 116 DITGIKNITFEVVGDNAYGYLKSEKGVHRLVRISPFNSAGKRQTSFASCDVVPDIEEDID 175 Query: 216 DIPLEDI-RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 LED +IDT RASG+GGQHVN T SA+RITH+PTGI+V +E+SQH N+ +AM++L Sbjct: 176 IDILEDDLKIDTYRASGAGGQHVNKTSSAIRITHLPTGIVVQCQNERSQHHNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 +A+L ++ + A + S R ++ +IR+Y + DHR N+ + VL Sbjct: 236 KAKLKLLQEQEQAEKVSDIR-GEVKDIGFGNQIRSYVMQPYTLVKDHRTNVENGNVTAVL 294 Query: 333 QGYIDDIINPLLT 345 G +D IN L Sbjct: 295 DGDLDMFINAYLK 307 >gi|167470509|ref|ZP_02335213.1| peptide chain release factor 2 [Yersinia pestis FV-1] Length = 248 Score = 196 bits (499), Expect = 3e-48, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 145/249 (58%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C L+++AG+GG+EA + L RMY R+A R +K E++ SD D G K Sbjct: 1 MFSGEYDRANCYLDLQAGSGGTEAQDWASMLLRMYLRWAESRGFKTEIIEESDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G F ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I Sbjct: 61 SATVKIIGEYAFGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 FEMQKKNADKQVLEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|320106646|ref|YP_004182236.1| hypothetical protein AciPR4_1419 [Terriglobus saanensis SP1PR4] gi|319925167|gb|ADV82242.1| hypothetical protein AciPR4_1419 [Terriglobus saanensis SP1PR4] Length = 375 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 105/354 (29%), Positives = 181/354 (51%), Gaps = 18/354 (5%) Query: 12 LKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 LK A IE + S+ + L E + ++S + +++ + + + Sbjct: 28 LKKDLARIEEQSSDPAIWADPARSQPLMRERKRLEGLLSDDADLERRSGDIDAYFELGRE 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + E+ I + ++ + + D + I+ + G GG+E+ + Sbjct: 88 GEN-------VEPELAREIASIEQAIEKLESRTMLSEETDPLNAIVTVHPGAGGTESQDW 140 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ + +K E+ D D+ G K TI+G + + E+GVHR+ R+ Sbjct: 141 AEMLMRMYLRWGERQGFKTEINEIQDGDEAGIKSATFTITGDFAYGLLSGETGVHRLVRI 200 Query: 189 PATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ R HTS ++V V PE + +DI +D+RIDT R+ G GGQHVNTTDSAVRIT Sbjct: 201 SPFDSAKRRHTSFSSVFVSPEIDDSIVIDIKPDDLRIDTYRSGGKGGQHVNTTDSAVRIT 260 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE--RKRMANERSANRKLQIGSGDRSE 304 H+PTGI+ +E+SQH+N+ +AMK+LR+RLY+ E +K+ + + + KL+I + Sbjct: 261 HLPTGIVAGCQNERSQHKNKDKAMKMLRSRLYEFELDKKKAISRKLEDSKLEI---NFGS 317 Query: 305 RIRTYNFSQGRI-TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +IR+Y R+ D R + + ++ VL G ++ I L + I + E Sbjct: 318 QIRSYVLQPYRMAKDLRTRVEVGDVDRVLDGDLEPFIRGFLRMRRDGHIPAPVE 371 >gi|256846801|ref|ZP_05552256.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_36A2] gi|256717767|gb|EEU31325.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_36A2] Length = 331 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 116/332 (34%), Positives = 168/332 (50%), Gaps = 11/332 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E E K +E ++ + +S Y++ E D +I S + Sbjct: 2 EKLTFEENFWSDKRKSSEIIKNMNFEKNIVSRYEKLATEIDDEEVLIDFVESGEASFENE 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I K E LL D + I+ I +G GG+EA + L+RMY R+ Sbjct: 62 LQTKHKILKSD---IEEFEINLLLDREYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRW 118 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 L+ +KV L + D G K + + G + +K E GVHR+ R+ +A+ + HT Sbjct: 119 CNLKGYKVSELDFMEGDSVGVKSVTFLVEGINAYGYLKSEKGVHRLVRISPFDANKKRHT 178 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE E +V+I DIRIDT RASG+GGQHVN TDSAVRITH P+GI+V Sbjct: 179 SFASVEVVPEVDENVEVEINPTDIRIDTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQ 238 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG- 314 E+SQ NR AMK+L+++L ++E K+ E + IG G+ +IR+Y F Sbjct: 239 KERSQLSNRETAMKMLKSKLLELEIKKKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYA 295 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N + ++ V+ G IDD IN L Sbjct: 296 LVKDHRTNTEIGNVKAVMDGSIDDFINSYLRW 327 >gi|333000723|gb|EGK20298.1| peptide chain release factor 2 [Shigella flexneri K-272] gi|333015221|gb|EGK34563.1| peptide chain release factor 2 [Shigella flexneri K-227] Length = 293 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 163/298 (54%), Gaps = 12/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 Q ++ L + + + + + A + E ++ + + D C Sbjct: 2 KQGLEDVSGLLELAVEADDEETFNEAV-----AELNALEEKLAQLEFRRMFSGEYDSADC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + ISG Sbjct: 57 YLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASG 231 + ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG Sbjct: 117 YGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 177 AGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 236 Query: 291 --ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 AMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|26346685|dbj|BAC36991.1| unnamed protein product [Mus musculus] Length = 446 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 129/360 (35%), Positives = 207/360 (57%), Gaps = 11/360 (3%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + S + L +A ++P+ + + +Q ++L + Sbjct: 77 QKYMEDLNKEYQTLDQCLQGISENEGDRRALHRRHAQLAPLAAVYQEIQEAEQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++L E I+++I L +E+ L+PK+ D ILE+ +G T Sbjct: 137 LCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLERLVPKEKYDWSDVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSYYKHWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+R+DT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ RKLQ Sbjct: 317 NTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQ 376 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +G+ +SERIRTYNF+Q R+TD RI + ++ L+G +D +I LL + + I Sbjct: 377 VGTRAQSERIRTYNFTQDRVTDPRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAISE 436 >gi|222034586|emb|CAP77328.1| Peptide chain release factor 2 [Escherichia coli LF82] Length = 293 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 163/298 (54%), Gaps = 12/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 Q ++ L + + + + + A + E ++ + + D C Sbjct: 2 KQGLEDVSGLLELAVEADDEETFNEAV-----AELDVLEEKLAQLEFRRMFSGEYDSADC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + ISG Sbjct: 57 YLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASG 231 + ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG Sbjct: 117 YGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 177 AGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 236 Query: 291 --ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 AMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|314923649|gb|EFS87480.1| peptide chain release factor 2 [Propionibacterium acnes HL001PA1] gi|314967087|gb|EFT11186.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA2] gi|315092708|gb|EFT64684.1| peptide chain release factor 2 [Propionibacterium acnes HL060PA1] gi|315103819|gb|EFT75795.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA2] gi|327327221|gb|EGE68997.1| peptide chain release factor 2 [Propionibacterium acnes HL103PA1] Length = 371 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLEKQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +AA F Sbjct: 90 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 148 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 268 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 324 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 325 SYVLHPYQMVKDLRTNHEVGNTDAV 349 >gi|228472944|ref|ZP_04057701.1| peptide chain release factor 2, programmed [Capnocytophaga gingivalis ATCC 33624] gi|228275526|gb|EEK14303.1| peptide chain release factor 2, programmed [Capnocytophaga gingivalis ATCC 33624] Length = 366 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 93/364 (25%), Positives = 175/364 (48%), Gaps = 28/364 (7%) Query: 3 FLSHKQICDLKNRFAEIELRMS----------------ESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ +L R +E + D+ + + Sbjct: 1 MVTIEQLKELSQRVENLEKYLQIDKKKIEIANEEEKTLAPDFWDSPKQAQLLVQKLQSQK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 ++ Y++ + ++L ++ + ++ + + I LE + + D Sbjct: 61 KWVTDYEKSAEMVEELQIMLDFYKENAISAEEVEDFYGQTLLHIENLE----FRNMLSDE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D S +L+I AG GG+E+ + L RMY +A + + V+ L+ + D G K + Sbjct: 117 GDALSAVLQITAGAGGTESCDWASMLMRMYMMWANRQGFSVKELNFQEGDVAGVKTVTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I DI + Sbjct: 177 IDGEFAFGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDTIEIEINPADISFE 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 TMR+SG+GGQ+VN ++AVR+ H PTGI++ S +SQ N+ +A+++L+++LY++E K+ Sbjct: 237 TMRSSGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQLYEIELKK 296 Query: 285 MANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 +R K++I G +IR Y + + D R ++ V+ G +DD + Sbjct: 297 RQAKRDEIEANKMKIEWG---SQIRNYVMHPYKLVKDVRSGYETTNVDAVMNGELDDFLK 353 Query: 342 PLLT 345 L Sbjct: 354 AYLM 357 >gi|312877708|ref|ZP_07737662.1| peptide chain release factor 2 [Caldicellulosiruptor lactoaceticus 6A] gi|311795509|gb|EFR11884.1| peptide chain release factor 2 [Caldicellulosiruptor lactoaceticus 6A] Length = 316 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 112/317 (35%), Positives = 169/317 (53%), Gaps = 10/317 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 I + KI + + + +DL + + ++E ++ E + + Sbjct: 1 MQKIKRLKDKIERFQKLYSQWEDLKVLTELSLDEGNHEMAEELEKELLDLERKI--EDFK 58 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 +L D + IL I AG GG+EA + L RMY R+A + +KVE L ++ Sbjct: 59 IEVLLNGPYDKNNAILSIHAGAGGTEAQDWAEMLLRMYTRWAVKKGYKVETLDILPGEEA 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K + I G + +K E GVHR+ R+ +A+GR HTS A V VLPE + D++I Sbjct: 119 GIKNVTVRIVGENAYGYLKAEKGVHRLVRISPFDAAGRRHTSFAAVEVLPEVEDDTDIEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 ED+ IDT RASG+GGQHVN T+SAVRI HIPTGI+V +E+SQH+NR A+K+L+A+ Sbjct: 179 KEEDLEIDTFRASGAGGQHVNKTESAVRIKHIPTGIVVTCQNERSQHKNREIALKILKAK 238 Query: 277 LYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQ 333 L +++ K + + Q IG G+ +IR+Y F + DHR + +E V+ Sbjct: 239 LLELKEKERREKIQKLKGEQTEIGWGN---QIRSYVFCPYTLVKDHRTEAEVGNVEAVMD 295 Query: 334 GYIDDIINPLLTAHQAK 350 G ID IN L + + Sbjct: 296 GEIDVFINAYLKKFRNE 312 >gi|86739504|ref|YP_479904.1| peptide chain release factor 2 [Frankia sp. CcI3] gi|123751448|sp|Q2JEW7|RF2_FRASC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|86566366|gb|ABD10175.1| bacterial peptide chain release factor 2 (bRF-2) [Frankia sp. CcI3] Length = 366 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 159/347 (45%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R ++E + ++ + +S I+ + ++ D+ Sbjct: 24 DVEGLRRRAEDLERQAADPDLWSDQDRAQAVTRRLSSTRGDIARVEGLRRRLDDIAAAAD 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D A + L+ + + L D++ I+++ AG GG +AA Sbjct: 84 LGDEDLLAEAAADLPRLSSDIAG------LEVRTLLSGEYDERDAIVQLSAGAGGVDAAD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV +S+ ++ G K + + ++ E GVHR+ R Sbjct: 138 WTAMLLRMYLRWAERHGYATEVFDTSEAEEAGLKSATFQVKAPYAYGTLRSEHGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V P VDI +D+RID R+SG GGQ VNTTDSAVRI Sbjct: 198 ISPFDNQNRRQTSFAGVEVTPVVELSDHVDIDDKDLRIDIFRSSGPGGQGVNTTDSAVRI 257 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R A E+ + G Sbjct: 258 THLPTGIVVTCQNERSQLQNKAAAMIVLQAKLLERRRAEEAAEKQRITGGPQDVSFG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y + + D R + VL G +DD I+ + ++ Sbjct: 315 SQIRNYVLHPYQMVKDLRTDTETSNTSGVLDGELDDFIDAEIRWRRS 361 >gi|90417430|ref|ZP_01225354.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2207] gi|90330764|gb|EAS46039.1| peptide chain release factor 2 [marine gamma proteobacterium HTCC2207] Length = 310 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 160/316 (50%), Gaps = 12/316 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E +A+ ++ I D + ++L + + + + D+ + + Sbjct: 1 MGRERSALEAVVKTIEDLDTGVADSRELLAMAVEEDDADTVADVETEIAALEAQLAK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + + + D + L+I++G+GG+EA + L RMY R+A + +K E++ S Sbjct: 58 --LEFRRMFSGEMDPNNAYLDIQSGSGGTEAQDWAEMLLRMYLRWADDKGFKAELVECSA 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D G K ISG + ++ E GVHR+ R ++ R HTS + V V PE + Sbjct: 116 GDVAGIKGATVQISGEYAYGWLRTEIGVHRLVRKSPFDSGNRRHTSFSAVYVSPEIDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQ-NRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+TH P+GI+V S + NR + ++ Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQSQSQRSQHQNRDKCWQM 235 Query: 273 LRARLYDVE--RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 LRA+LY++E ++ A + + + K IG G +IR+Y RI D R + Sbjct: 236 LRAKLYELEVSIRQKAAQATEDTKSDIGWG---SQIRSYVLDDARIKDLRTGVETRNTGA 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D I L A Sbjct: 293 VLDGKLDQFIVASLKA 308 >gi|307111728|gb|EFN59962.1| hypothetical protein CHLNCDRAFT_133064 [Chlorella variabilis] Length = 426 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 157/345 (45%), Gaps = 6/345 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL-HTVI 66 + LK R AE+E S + + T ++ + +++ ++ + +DL + Sbjct: 64 DLPSLKRRMAELEEAAGASDLWEQRARATAVLQQLTALREEVAALERFCGQLEDLGVAME 123 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E +I + L DD+ +L I+AG GG++A Sbjct: 124 LLEMEDEAGAQAMAAEAGSICDGLAAGLEAWELRRLLGGPYDDRGAVLTIQAGAGGTDAQ 183 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + + V+ ++ G K + + GR + + E G HR+ Sbjct: 184 DWAEMLERMYLRWAEKQGHRTRVVDRQQGEEAGIKSVEIEVDGRYAYGYLHGEKGTHRLV 243 Query: 187 RVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R A TS A V V+P E +V++P D+ I TMR++G+GGQ+VN ++AV Sbjct: 244 RQSPFNAKAARQTSFAAVEVMPMLGELVDEVELPESDLEITTMRSAGAGGQNVNKVETAV 303 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RI H+PTGI V E+SQ QN+ A+ +L+A+L V +++ E + R + + Sbjct: 304 RIKHLPTGIAVKCQMERSQAQNKSIALGMLKAKLLVVAQEQQLQEVAEIRGDLVK-AEWG 362 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 ++IR Y F + + D R + V+ G + + L Sbjct: 363 QQIRNYVFHPYKLVKDVRTGQETSDVAGVMDGELQPFMQAYLQHR 407 >gi|299142161|ref|ZP_07035294.1| peptide chain release factor 2, programmed [Prevotella oris C735] gi|298576250|gb|EFI48123.1| peptide chain release factor 2, programmed [Prevotella oris C735] Length = 378 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 94/376 (25%), Positives = 162/376 (43%), Gaps = 36/376 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R F E +LR D + + + I Sbjct: 1 MITADQLKDITERTDALHRYLGIDQKKIEFEEEQLRTQAPDFWDDPKRAEAQMRKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + YD +Q +L + + + + K + +LE + + Sbjct: 61 KWLKGYDACRQLTDELQLAFDFYKDEMVSEEEVDADYAKAVKAVEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY+R++ + V+V D D+ G K + T Sbjct: 117 EDSMDAVLKINSGAGGTESQDWAQMLMRMYQRWSESHGYTVKVTDIQDGDEAGIKSVTMT 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVYVDPAKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM +L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEHEEILIENTETRDQPKNRAKAMLLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR ++ V+ Sbjct: 297 QLYDRALKKRQAEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTGFQTSDVDAVMD 353 Query: 334 GYIDDIINPLLTAHQA 349 G +D I L A Sbjct: 354 GKLDGFIKAYLMEFAA 369 >gi|82545486|ref|YP_409433.1| peptide chain release factor RF-2 [Shigella boydii Sb227] gi|82778343|ref|YP_404692.1| peptide chain release factor RF-2 [Shigella dysenteriae Sd197] gi|110643039|ref|YP_670769.1| peptide chain release factor 2 [Escherichia coli 536] gi|117625122|ref|YP_854110.1| peptide chain release factor 2 [Escherichia coli APEC O1] gi|195936508|ref|ZP_03081890.1| hypothetical protein EscherichcoliO157_08602 [Escherichia coli O157:H7 str. EC4024] gi|209920345|ref|YP_002294429.1| peptide chain release factor 2 [Escherichia coli SE11] gi|217327359|ref|ZP_03443442.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. TW14588] gi|227888439|ref|ZP_04006244.1| peptide chain release factor 2 [Escherichia coli 83972] gi|237706466|ref|ZP_04536947.1| peptide chain release factor RF-2 [Escherichia sp. 3_2_53FAA] gi|254037934|ref|ZP_04871992.1| peptide chain release factor RF-2 [Escherichia sp. 1_1_43] gi|256019311|ref|ZP_05433176.1| peptide chain release factor 2 [Shigella sp. D9] gi|256024599|ref|ZP_05438464.1| peptide chain release factor 2 [Escherichia sp. 4_1_40B] gi|261226204|ref|ZP_05940485.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. FRIK2000] gi|261256541|ref|ZP_05949074.1| peptide chain release factor RF-2 [Escherichia coli O157:H7 str. FRIK966] gi|293406389|ref|ZP_06650315.1| peptide chain release factor 2 [Escherichia coli FVEC1412] gi|293412249|ref|ZP_06654972.1| peptide chain release factor 2 [Escherichia coli B354] gi|293416144|ref|ZP_06658784.1| peptide chain release factor 2 [Escherichia coli B185] gi|298382125|ref|ZP_06991722.1| peptide chain release factor 2 [Escherichia coli FVEC1302] gi|300815658|ref|ZP_07095882.1| peptide chain release factor 2 [Escherichia coli MS 107-1] gi|300820694|ref|ZP_07100845.1| peptide chain release factor 2 [Escherichia coli MS 119-7] gi|300896214|ref|ZP_07114763.1| peptide chain release factor 2 [Escherichia coli MS 198-1] gi|300906560|ref|ZP_07124251.1| peptide chain release factor 2 [Escherichia coli MS 84-1] gi|300921222|ref|ZP_07137595.1| peptide chain release factor 2 [Escherichia coli MS 115-1] gi|300925129|ref|ZP_07141043.1| peptide chain release factor 2 [Escherichia coli MS 182-1] gi|300928174|ref|ZP_07143716.1| peptide chain release factor 2 [Escherichia coli MS 187-1] gi|300936044|ref|ZP_07150992.1| peptide chain release factor 2 [Escherichia coli MS 21-1] gi|300947611|ref|ZP_07161783.1| peptide chain release factor 2 [Escherichia coli MS 116-1] gi|300954270|ref|ZP_07166733.1| peptide chain release factor 2 [Escherichia coli MS 175-1] gi|300980316|ref|ZP_07174970.1| peptide chain release factor 2 [Escherichia coli MS 45-1] gi|300995678|ref|ZP_07181206.1| peptide chain release factor 2 [Escherichia coli MS 200-1] gi|301027417|ref|ZP_07190754.1| peptide chain release factor 2 [Escherichia coli MS 69-1] gi|301027812|ref|ZP_07191117.1| peptide chain release factor 2 [Escherichia coli MS 196-1] gi|301049326|ref|ZP_07196296.1| peptide chain release factor 2 [Escherichia coli MS 185-1] gi|301303048|ref|ZP_07209175.1| peptide chain release factor 2 [Escherichia coli MS 124-1] gi|301327291|ref|ZP_07220547.1| peptide chain release factor 2 [Escherichia coli MS 78-1] gi|301643760|ref|ZP_07243798.1| peptide chain release factor 2 [Escherichia coli MS 146-1] gi|306812207|ref|ZP_07446405.1| peptide chain release factor 2 [Escherichia coli NC101] gi|307139578|ref|ZP_07498934.1| peptide chain release factor 2 [Escherichia coli H736] gi|307310490|ref|ZP_07590138.1| peptide chain release factor 2 [Escherichia coli W] gi|309785302|ref|ZP_07679933.1| peptide chain release factor 2 [Shigella dysenteriae 1617] gi|309793962|ref|ZP_07688387.1| peptide chain release factor 2 [Escherichia coli MS 145-7] gi|312964850|ref|ZP_07779090.1| peptide chain release factor 2 [Escherichia coli 2362-75] gi|312972868|ref|ZP_07787041.1| peptide chain release factor 2 [Escherichia coli 1827-70] gi|331643580|ref|ZP_08344711.1| peptide chain release factor 2 [Escherichia coli H736] gi|331648636|ref|ZP_08349724.1| peptide chain release factor 2 [Escherichia coli M605] gi|331654388|ref|ZP_08355388.1| peptide chain release factor 2 [Escherichia coli M718] gi|331659020|ref|ZP_08359962.1| peptide chain release factor 2 [Escherichia coli TA206] gi|331664463|ref|ZP_08365369.1| peptide chain release factor 2 [Escherichia coli TA143] gi|331669625|ref|ZP_08370471.1| peptide chain release factor 2 [Escherichia coli TA271] gi|331678877|ref|ZP_08379551.1| peptide chain release factor 2 [Escherichia coli H591] gi|331684516|ref|ZP_08385108.1| peptide chain release factor 2 [Escherichia coli H299] gi|81242491|gb|ABB63201.1| peptide chain release factor RF-2 [Shigella dysenteriae Sd197] gi|81246897|gb|ABB67605.1| peptide chain release factor RF-2 [Shigella boydii Sb227] gi|110344631|gb|ABG70868.1| peptide chain release factor 2 [Escherichia coli 536] gi|115514246|gb|ABJ02321.1| peptide chain release factor 2 [Escherichia coli APEC O1] gi|209913604|dbj|BAG78678.1| peptide chain release factor 2 [Escherichia coli SE11] gi|217319726|gb|EEC28151.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. TW14588] gi|226839558|gb|EEH71579.1| peptide chain release factor RF-2 [Escherichia sp. 1_1_43] gi|226899506|gb|EEH85765.1| peptide chain release factor RF-2 [Escherichia sp. 3_2_53FAA] gi|227834708|gb|EEJ45174.1| peptide chain release factor 2 [Escherichia coli 83972] gi|281179896|dbj|BAI56226.1| peptide chain release factor 2 [Escherichia coli SE15] gi|281602223|gb|ADA75207.1| Peptide chain release factor 2 [Shigella flexneri 2002017] gi|284922839|emb|CBG35928.1| peptide chain release factor 2 (RF-2) [Escherichia coli 042] gi|291426395|gb|EFE99427.1| peptide chain release factor 2 [Escherichia coli FVEC1412] gi|291432333|gb|EFF05315.1| peptide chain release factor 2 [Escherichia coli B185] gi|291469020|gb|EFF11511.1| peptide chain release factor 2 [Escherichia coli B354] gi|298277265|gb|EFI18781.1| peptide chain release factor 2 [Escherichia coli FVEC1302] gi|299879074|gb|EFI87285.1| peptide chain release factor 2 [Escherichia coli MS 196-1] gi|300298925|gb|EFJ55310.1| peptide chain release factor 2 [Escherichia coli MS 185-1] gi|300304786|gb|EFJ59306.1| peptide chain release factor 2 [Escherichia coli MS 200-1] gi|300318731|gb|EFJ68515.1| peptide chain release factor 2 [Escherichia coli MS 175-1] gi|300359948|gb|EFJ75818.1| peptide chain release factor 2 [Escherichia coli MS 198-1] gi|300394925|gb|EFJ78463.1| peptide chain release factor 2 [Escherichia coli MS 69-1] gi|300401599|gb|EFJ85137.1| peptide chain release factor 2 [Escherichia coli MS 84-1] gi|300409324|gb|EFJ92862.1| peptide chain release factor 2 [Escherichia coli MS 45-1] gi|300411828|gb|EFJ95138.1| peptide chain release factor 2 [Escherichia coli MS 115-1] gi|300418731|gb|EFK02042.1| peptide chain release factor 2 [Escherichia coli MS 182-1] gi|300452808|gb|EFK16428.1| peptide chain release factor 2 [Escherichia coli MS 116-1] gi|300458836|gb|EFK22329.1| peptide chain release factor 2 [Escherichia coli MS 21-1] gi|300463814|gb|EFK27307.1| peptide chain release factor 2 [Escherichia coli MS 187-1] gi|300526958|gb|EFK48027.1| peptide chain release factor 2 [Escherichia coli MS 119-7] gi|300531587|gb|EFK52649.1| peptide chain release factor 2 [Escherichia coli MS 107-1] gi|300841712|gb|EFK69472.1| peptide chain release factor 2 [Escherichia coli MS 124-1] gi|300846154|gb|EFK73914.1| peptide chain release factor 2 [Escherichia coli MS 78-1] gi|301077859|gb|EFK92665.1| peptide chain release factor 2 [Escherichia coli MS 146-1] gi|305854245|gb|EFM54683.1| peptide chain release factor 2 [Escherichia coli NC101] gi|306909385|gb|EFN39880.1| peptide chain release factor 2 [Escherichia coli W] gi|307554867|gb|ADN47642.1| peptide chain release factor RF-2 [Escherichia coli ABU 83972] gi|307625536|gb|ADN69840.1| peptide chain release factor 2 [Escherichia coli UM146] gi|308122369|gb|EFO59631.1| peptide chain release factor 2 [Escherichia coli MS 145-7] gi|308926422|gb|EFP71898.1| peptide chain release factor 2 [Shigella dysenteriae 1617] gi|310332810|gb|EFQ00024.1| peptide chain release factor 2 [Escherichia coli 1827-70] gi|312290406|gb|EFR18286.1| peptide chain release factor 2 [Escherichia coli 2362-75] gi|313647930|gb|EFS12376.1| peptide chain release factor 2 [Shigella flexneri 2a str. 2457T] gi|315062195|gb|ADT76522.1| peptide chain release factor RF-2 [Escherichia coli W] gi|315256773|gb|EFU36741.1| peptide chain release factor 2 [Escherichia coli MS 85-1] gi|315289447|gb|EFU48842.1| peptide chain release factor 2 [Escherichia coli MS 110-3] gi|315293877|gb|EFU53229.1| peptide chain release factor 2 [Escherichia coli MS 153-1] gi|315295678|gb|EFU54998.1| peptide chain release factor 2 [Escherichia coli MS 16-3] gi|315614954|gb|EFU95592.1| peptide chain release factor 2 [Escherichia coli 3431] gi|320175922|gb|EFW51000.1| peptide chain release factor 2 [Shigella dysenteriae CDC 74-1112] gi|320182207|gb|EFW57110.1| peptide chain release factor 2 [Shigella boydii ATCC 9905] gi|320184566|gb|EFW59367.1| peptide chain release factor 2 [Shigella flexneri CDC 796-83] gi|320189234|gb|EFW63893.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. EC1212] gi|320195009|gb|EFW69638.1| peptide chain release factor 2 [Escherichia coli WV_060327] gi|320202550|gb|EFW77120.1| peptide chain release factor 2 [Escherichia coli EC4100B] gi|320640534|gb|EFX10073.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. G5101] gi|320645781|gb|EFX14766.1| peptide chain release factor 2 [Escherichia coli O157:H- str. 493-89] gi|320651081|gb|EFX19521.1| peptide chain release factor 2 [Escherichia coli O157:H- str. H 2687] gi|320656577|gb|EFX24473.1| peptide chain release factor 2 [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662097|gb|EFX29498.1| peptide chain release factor 2 [Escherichia coli O55:H7 str. USDA 5905] gi|320667172|gb|EFX34135.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. LSU-61] gi|323154771|gb|EFZ40969.1| peptide chain release factor 2 [Escherichia coli EPECa14] gi|323162519|gb|EFZ48369.1| peptide chain release factor 2 [Escherichia coli E128010] gi|323167904|gb|EFZ53594.1| peptide chain release factor 2 [Shigella sonnei 53G] gi|323173888|gb|EFZ59517.1| peptide chain release factor 2 [Escherichia coli LT-68] gi|323180334|gb|EFZ65886.1| peptide chain release factor 2 [Escherichia coli 1180] gi|323183444|gb|EFZ68841.1| peptide chain release factor 2 [Escherichia coli 1357] gi|323188711|gb|EFZ73996.1| peptide chain release factor 2 [Escherichia coli RN587/1] gi|323935878|gb|EGB32177.1| peptide chain release 2 [Escherichia coli E1520] gi|323941589|gb|EGB37769.1| peptide chain release [Escherichia coli E482] gi|323946624|gb|EGB42647.1| peptide chain release 2 [Escherichia coli H120] gi|323951671|gb|EGB47546.1| peptide chain release [Escherichia coli H252] gi|323957389|gb|EGB53111.1| peptide chain release [Escherichia coli H263] gi|323960813|gb|EGB56434.1| peptide chain release [Escherichia coli H489] gi|323966691|gb|EGB62123.1| peptide chain release [Escherichia coli M863] gi|323971672|gb|EGB66901.1| peptide chain release [Escherichia coli TA007] gi|323978818|gb|EGB73899.1| peptide chain release [Escherichia coli TW10509] gi|324005542|gb|EGB74761.1| peptide chain release factor 2 [Escherichia coli MS 57-2] gi|324011760|gb|EGB80979.1| peptide chain release factor 2 [Escherichia coli MS 60-1] gi|324017287|gb|EGB86506.1| peptide chain release factor 2 [Escherichia coli MS 117-3] gi|324115093|gb|EGC09058.1| peptide chain release [Escherichia fergusonii B253] gi|324119931|gb|EGC13810.1| peptide chain release [Escherichia coli E1167] gi|325498452|gb|EGC96311.1| peptide chain release factor 2 [Escherichia fergusonii ECD227] gi|326339026|gb|EGD62841.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. 1044] gi|326343092|gb|EGD66860.1| peptide chain release factor 2 [Escherichia coli O157:H7 str. 1125] gi|327251653|gb|EGE63339.1| peptide chain release factor 2 [Escherichia coli STEC_7v] gi|331037051|gb|EGI09275.1| peptide chain release factor 2 [Escherichia coli H736] gi|331042383|gb|EGI14525.1| peptide chain release factor 2 [Escherichia coli M605] gi|331047770|gb|EGI19847.1| peptide chain release factor 2 [Escherichia coli M718] gi|331053602|gb|EGI25631.1| peptide chain release factor 2 [Escherichia coli TA206] gi|331058394|gb|EGI30375.1| peptide chain release factor 2 [Escherichia coli TA143] gi|331063293|gb|EGI35206.1| peptide chain release factor 2 [Escherichia coli TA271] gi|331073707|gb|EGI45028.1| peptide chain release factor 2 [Escherichia coli H591] gi|331078131|gb|EGI49337.1| peptide chain release factor 2 [Escherichia coli H299] gi|332086815|gb|EGI91951.1| peptide chain release factor 2 [Shigella boydii 5216-82] gi|332087643|gb|EGI92770.1| peptide chain release factor 2 [Shigella dysenteriae 155-74] gi|332090885|gb|EGI95976.1| peptide chain release factor 2 [Shigella boydii 3594-74] gi|332344786|gb|AEE58120.1| peptide chain release factor protein PrfB [Escherichia coli UMNK88] gi|332752927|gb|EGJ83311.1| peptide chain release factor 2 [Shigella flexneri 4343-70] gi|332753726|gb|EGJ84105.1| peptide chain release factor 2 [Shigella flexneri K-671] gi|332754583|gb|EGJ84949.1| peptide chain release factor 2 [Shigella flexneri 2747-71] gi|332765821|gb|EGJ96034.1| peptide chain release factor 2 [Shigella flexneri 2930-71] gi|332999677|gb|EGK19262.1| peptide chain release factor 2 [Shigella flexneri VA-6] gi|333000272|gb|EGK19855.1| peptide chain release factor 2 [Shigella flexneri K-218] gi|333015042|gb|EGK34385.1| peptide chain release factor 2 [Shigella flexneri K-304] Length = 293 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 103/298 (34%), Positives = 163/298 (54%), Gaps = 12/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 Q ++ L + + + + + A + E ++ + + D C Sbjct: 2 KQGLEDVSGLLELAVEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADC 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + ISG Sbjct: 57 YLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASG 231 + ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG Sbjct: 117 YGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 177 AGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQ 236 Query: 291 --ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 AMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|149192200|ref|ZP_01870417.1| bacterial peptide chain release factor 2 (RF-2) [Vibrio shilonii AK1] gi|148833958|gb|EDL50978.1| bacterial peptide chain release factor 2 (RF-2) [Vibrio shilonii AK1] Length = 248 Score = 196 bits (498), Expect = 4e-48, Method: Composition-based stats. Identities = 98/248 (39%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C +++++G+GG+EA + + RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGDHDASDCYIDLQSGSGGTEAQDWTNMMLRMYLRWAEAKGFKTEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++SGR HTS A+ V PE + +DI Sbjct: 61 GATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFVYPEIDDNIQIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT I+V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNIVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 FELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|325268643|ref|ZP_08135273.1| peptide chain release factor RF2 [Prevotella multiformis DSM 16608] gi|324989171|gb|EGC21124.1| peptide chain release factor RF2 [Prevotella multiformis DSM 16608] Length = 371 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 160/373 (42%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R F E +LR D + E+ + I Sbjct: 1 MITADQLKDIQVRTDALHRYLDIDRKRIEFEEEQLRTQAPDFWDDPKRAQEQMKKVKEIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I YD+ + + + + + K I +LE + + Sbjct: 61 KWIKGYDEARSLTDEAQLAFDFYKDELVTEEEVDTAYDKAFKVIEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV V + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAHGYKVTVSDIQEGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRMEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G ID I L Sbjct: 354 GKIDAFIKAYLME 366 >gi|326798108|ref|YP_004315927.1| hypothetical protein Sph21_0678 [Sphingobacterium sp. 21] gi|326548872|gb|ADZ77257.1| hypothetical protein Sph21_0678 [Sphingobacterium sp. 21] Length = 361 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 86/344 (25%), Positives = 154/344 (44%), Gaps = 8/344 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H I + + + + D + + +I +D+ Q D + Sbjct: 19 HLDIDAKQKEINQEQEITLKPDFWDHPKEAEKVLQSIKSKKVWTDSFDELLQAIDDASVM 78 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + S A K + ELE + + +D + IL+I AG GG+E+ Sbjct: 79 FDFYQSGDASEQEADELFQEALKRVEELE----FKNMLSAEEDQLTAILQITAGAGGTES 134 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY + +KV + D G K + G + +K E+GVHR+ Sbjct: 135 CDWAAMLMRMYIMWGEKNGYKVTEQDFLEGDVAGVKSVTLQFDGNFAYGYLKGENGVHRL 194 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ + HTS A+V V P I++++ DI DT R+ G+GGQ+VN ++AV Sbjct: 195 VRISPFDSNAKRHTSFASVYVYPLVDDTIEIEVKDSDIEWDTFRSGGAGGQNVNKVETAV 254 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+ H P+GI++ +SQ QN+ AM++L+++LY++E ++ +A + + Sbjct: 255 RLHHKPSGIVIKNQESRSQLQNKDNAMRLLKSQLYEIEMRKRMETTAAIEGSK-KKIEWG 313 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y + + D R + VL G +D+ + L Sbjct: 314 SQIRNYVLHPYKLVKDLRTGHETSNTQAVLDGELDEFLKSYLME 357 >gi|332994017|gb|AEF04072.1| protein chain release factor B, RF-2 [Alteromonas sp. SN2] Length = 248 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 95/248 (38%), Positives = 139/248 (56%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D C ++I++G+GG+EA + L RMY R+ +K E++ SD D G K Sbjct: 1 MFSQPNDANDCYIDIQSGSGGTEAQDWANMLLRMYLRWGEAHGFKTELIEVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 I+G F ++ E+GVHR+ R ++ R HTS ++ V PE + Sbjct: 61 SATLRIAGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSSAFVYPEVDDDIDIDIDPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQHVN TDSAVRITH PTGI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDTYRASGAGGQHVNRTDSAVRITHEPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 YELQKQNAEKQAMEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGGLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|326561123|gb|EGE11488.1| peptide chain release factor 2 [Moraxella catarrhalis 7169] Length = 248 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 136/249 (54%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C L+I++G+GG+EA + L RMY R+ +K EVL S+ G K Sbjct: 1 MFSGEMDANNCYLDIQSGSGGTEAQDWAQMLLRMYLRWCESHGFKAEVLEVSEGGVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 + G F ++ E GVHR+ R +++ HTS A V V PE + Sbjct: 61 SATIMVKGDYAFGWLRTEIGVHRLVRKSPFDSNNGRHTSFAAVFVSPEIDDNIDIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH PTG++V +E+SQH N+ AMK+LRA+LY+ Sbjct: 121 DLRIDTYRSSGAGGQHVNTTDSAVRITHQPTGVVVACQNERSQHANKDTAMKMLRAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ K IG G +IR+Y RI D R + VL G +D Sbjct: 181 LEMQKRMEKQQALEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVETSNTTAVLNGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|281425018|ref|ZP_06255931.1| peptide chain release factor 2 [Prevotella oris F0302] gi|281400862|gb|EFB31693.1| peptide chain release factor 2 [Prevotella oris F0302] Length = 378 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 93/376 (24%), Positives = 162/376 (43%), Gaps = 36/376 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R F E +LR D + + + I Sbjct: 1 MITADQLKDITERTDALHRYLGIDQKKIEFEEEQLRTQAPDFWDDPKRAEAQMRKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y+ +Q +L + + + + K + +LE + + Sbjct: 61 KWLKGYNACRQLTDELQLAFDFYKDEMVSEEEVDADYAKAVKAVEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY+R++ + V+V D D+ G K + T Sbjct: 117 EDSMDAVLKINSGAGGTESQDWAQMLMRMYQRWSESHGYTVKVTDIQDGDEAGIKSVTMT 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVYVDPAKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM +L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEHEEILIENTETRDQPKNRAKAMLLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR ++ V+ Sbjct: 297 QLYDRALKKRQAEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTGFQTSDVDAVMD 353 Query: 334 GYIDDIINPLLTAHQA 349 G +D I L A Sbjct: 354 GKLDGFIKAYLMEFAA 369 >gi|300778963|ref|ZP_07088821.1| peptide chain release factor RF2 [Chryseobacterium gleum ATCC 35910] gi|300504473|gb|EFK35613.1| peptide chain release factor RF2 [Chryseobacterium gleum ATCC 35910] Length = 376 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 97/365 (26%), Positives = 175/365 (47%), Gaps = 28/365 (7%) Query: 4 LSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPIIS 47 +++ QI ++++R ++ + + + D + Sbjct: 8 INNDQIKEVQSRIEDLHRYLQIEKKKIEIANDDEKTAAPEFWDNPKTAEAFLKQLRSKKK 67 Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + YD+ + +DL + D + + ++I +LE + + + Sbjct: 68 WVESYDEIHTQFEDLQVLADFAKEDPDSEKELDETFPQLVEKIEDLE----FKNMLSNEG 123 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D+ S +L+I AG GG+E+ + L RMY +A + +K+ L+ + D G K + I Sbjct: 124 DELSAVLQITAGAGGTESCDWASMLMRMYTMWAEKQGYKIRELNFQEGDVAGVKTVTLEI 183 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 G F +K E+GVHR+ R+ +++ + HTS +V V P I+++I DI +T Sbjct: 184 EGEYAFGYLKGENGVHRLVRISPFDSNAKRHTSFVSVYVYPLVDDTIEININPADISFET 243 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRM 285 MRASG+GGQ+VN ++AVR+ H PTGI++ S +SQ QN+ +AM++LR+RLY++E + Sbjct: 244 MRASGAGGQNVNKVETAVRLRHAPTGIIIENSESRSQLQNKEKAMQLLRSRLYEMELEER 303 Query: 286 ANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 R+ K++I G +IR Y + + D R ++ V+ G I + Sbjct: 304 MKARNEIEANKMKIEWG---SQIRNYVMHPYKLVKDVRSGHETSDVDAVMNGNITPFLKA 360 Query: 343 LLTAH 347 L A Sbjct: 361 FLMAD 365 >gi|331674375|ref|ZP_08375135.1| peptide chain release factor 2 [Escherichia coli TA280] gi|331068469|gb|EGI39864.1| peptide chain release factor 2 [Escherichia coli TA280] Length = 291 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 163/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + E ++ + + D C Sbjct: 1 QGLEDVSGLLELAVEADDEETFNEAV-----AELDALEEKLAQLEFRRMFSGEYDSADCY 55 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + ISG + Sbjct: 56 LDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIKSVTIKISGDYAY 115 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 116 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGA 175 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 176 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 235 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 236 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 289 >gi|282853672|ref|ZP_06263009.1| peptide chain release factor 2 [Propionibacterium acnes J139] gi|282583125|gb|EFB88505.1| peptide chain release factor 2 [Propionibacterium acnes J139] gi|314983205|gb|EFT27297.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA3] gi|315092426|gb|EFT64402.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA4] Length = 368 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 27 EAKKAEIADLEKQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +AA F Sbjct: 87 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 145 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 205 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 265 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 321 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 322 SYVLHPYQMVKDLRTNHEVGNTDAV 346 >gi|170718675|ref|YP_001783869.1| peptide chain release factor 2 [Haemophilus somnus 2336] gi|168826804|gb|ACA32175.1| peptide chain release factor 2 [Haemophilus somnus 2336] Length = 289 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 98/294 (33%), Positives = 155/294 (52%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + + E +A +E+ + + + + D+ C +++ Sbjct: 2 EDVDGLLELSVEAED-----ETTFNEAVAEAEELEKKLATLEFRRMFSGQHDNCDCYVDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ S D G K I+G F + Sbjct: 57 QAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELVEVSSGDVAGLKSATIRIAGEYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQ 235 + E+G+HR+ R +++ R HTS A V PE + D+RID RASG+GGQ Sbjct: 117 RTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEIDDDIEIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITHIP+GI+V + +SQHQN+ +AMK L+A+LY++E + ++ + Sbjct: 177 HVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQAMKQLKAKLYEMEMMKKNADKQAMED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 SKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 287 >gi|27379419|ref|NP_770948.1| peptide chain release factor 2 [Bradyrhizobium japonicum USDA 110] gi|27352570|dbj|BAC49573.1| peptide chain release factor 2 [Bradyrhizobium japonicum USDA 110] Length = 322 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 166/317 (52%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ +S I +Q+ +++ + + D E A K +++ Sbjct: 1 MQERTSLEDSLSGIGKVEQELEDDIGMIELGEAEGDD-----GVVAEAEAALKALKKEVA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +KVE L S+ Sbjct: 56 RRELEALLSGEADRFDSYLEVHAGAGGTESQDWAQMLLRMYTRWAETHGFKVEYLEESEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K +SG + +K E+GVHR+ R+ +++ R HTS ++V V P I Sbjct: 116 EEAGIKSATIQVSGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQVFPVIDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ + +A++ K IG G +IR+Y + + D R + Sbjct: 236 RARLYEMELKKREEKAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L Sbjct: 293 VLNGELDDFMAATLAQR 309 >gi|85057585|ref|YP_456501.1| peptide chain release factor 2 [Aster yellows witches'-broom phytoplasma AYWB] gi|84789690|gb|ABC65422.1| bacterial peptide chain release factor 2 [Aster yellows witches'-broom phytoplasma AYWB] Length = 370 Score = 196 bits (497), Expect = 5e-48, Method: Composition-based stats. Identities = 101/340 (29%), Positives = 167/340 (49%), Gaps = 7/340 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + ++ M + K + + K + + +Q DL T Sbjct: 26 LKKTNQTIEKLNCAMQKEDFWQNPKKAVTISQQFNDLQDKKNTLEILEQNYLDLETFFNL 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + S +E L + E+ + K + + + D + IL G GG+E+ + Sbjct: 86 NESPNEASALLEEELKNLTKSV----FDFKIKIFLNQPYDINNAILLFHPGAGGTESQDW 141 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 LFRMY++YA + +K E+L + G K I G + +K E GVHR+ R+ Sbjct: 142 CEMLFRMYQKYAQKKNFKTEILDYQLGEGAGVKSATLLIKGTYAYGYLKAEKGVHRLVRI 201 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS VLPE E ED++ID R+SG+GGQHVNTTDSAVRIT Sbjct: 202 SPFDSNSKRHTSFVACDVLPEINEEIKINLKTEDLKIDVFRSSGAGGQHVNTTDSAVRIT 261 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTG++V +E+SQ +N+ +A+++L+ +L+ + K+ + + + +I Sbjct: 262 HLPTGLVVGCQNERSQIKNKEKALQMLKTKLFQLASKQQKEQNAKKFQSDQKENGWGSQI 321 Query: 307 RTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+Y F + DHR N +++LE V+ G ID+ IN LT Sbjct: 322 RSYVFHPYKMVKDHRTNQEIFQLEQVMDGNIDEFINGYLT 361 >gi|323343897|ref|ZP_08084124.1| peptide chain release factor RF2 [Prevotella oralis ATCC 33269] gi|323095716|gb|EFZ38290.1| peptide chain release factor RF2 [Prevotella oralis ATCC 33269] Length = 373 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 99/373 (26%), Positives = 168/373 (45%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R F E +LR + + E+ + I Sbjct: 1 MITADQLKDVLERADALHRYLDIDRKMVEFEEEQLRTQAPDFWEDPQRAQEQMKLVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + +Q +L ++ D + + K I +LE + + Sbjct: 61 KWIKGYKEVRQYADELQLAFDFYHDDMVSEEEVDADYAKAIKAIEDLEL----KNMLRQQ 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+L+I +G GG+E+ + L RMY R+A +KV + + + D+ G K + Sbjct: 117 EDPMECVLKINSGAGGTESQDWAQMLMRMYMRWAEAHGYKVSISNLQEGDEAGIKSVTME 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + + Sbjct: 177 IEGGEYAYGFLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDSIEVFVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+ G+GGQ+VN +S VR+ ++ ++ + + Q +NR +AM +L++ Sbjct: 237 DTFRSGGAGGQNVNKVESGVRLRYMYQDPDTGEEEEILIENTETRDQPKNRAKAMLLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRLEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|325105358|ref|YP_004275012.1| bacterial peptide chain release factor 2 (bRF-2) [Pedobacter saltans DSM 12145] gi|324974206|gb|ADY53190.1| bacterial peptide chain release factor 2 (bRF-2) [Pedobacter saltans DSM 12145] Length = 362 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 92/363 (25%), Positives = 164/363 (45%), Gaps = 24/363 (6%) Query: 4 LSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPIIS 47 ++ +Q+ DL++R + E E D + + I S Sbjct: 1 MTKEQLQDLRDRITSLRRHLDIDAKLIELHREEAMTLEPTFWDNPKEAEKILHTIKIRKS 60 Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 Y +DL + + S D +K + ELE + + + Sbjct: 61 WTEAYSNANAAVEDLAVMYEFYQSGDATADEVDEAYAYAQKMLEELE----FKNMLSAEE 116 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D + +L+I AG GG+E+ + L RMY + KV S + D G K + Sbjct: 117 DQLNAVLQITAGAGGTESCDWASMLMRMYIMWGEKHGCKVIEQDSQEGDVAGIKSVTLQF 176 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 G + +K E+GVHR+ R+ +++ + HTS A+V V P ID+ + D+ +T Sbjct: 177 EGDFAYGHLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLIDDNIDIQVNPADLEFET 236 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+ G+GGQ+VN ++AVR+ H PTGI++ +SQ QN+ A+++L+++LY++E ++ Sbjct: 237 FRSGGAGGQNVNKVETAVRLYHKPTGIIIKNQESRSQLQNKENAIRLLKSQLYEIEMRKR 296 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + +A + +IR Y + I D+R + ++ VL G +D+ I L Sbjct: 297 REKSAAIE-SDKKKIEWGSQIRNYVLHPYKLIKDNRTDYETSNVQDVLDGDLDEFIKAYL 355 Query: 345 TAH 347 + Sbjct: 356 MEY 358 >gi|225568858|ref|ZP_03777883.1| hypothetical protein CLOHYLEM_04937 [Clostridium hylemonae DSM 15053] gi|225162357|gb|EEG74976.1| hypothetical protein CLOHYLEM_04937 [Clostridium hylemonae DSM 15053] Length = 312 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 97/313 (30%), Positives = 159/313 (50%), Gaps = 9/313 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E + ++ I ++ L + + N S ++++ A + E Sbjct: 1 MKELKDLQELVKTIHSLYDGYEDINLLIEMSYEENDASAVKEME-----AEIQSFEEQFE 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L D + I+ I AG GG+E+ + G L+RMY R+A + + +EVL D Sbjct: 56 ALRIRTLLSGEYDACNAIVTIHAGAGGTESCDWAGMLYRMYSRFAERKGYSMEVLDYLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV 215 D G K + + G + +K E GVHR+ R+ A+G+ TS A+ V+P+ + Sbjct: 116 DITGIKTVTFEVKGENAYGYLKSEKGVHRLVRISPFNAAGKRQTSFASCDVVPDIEDEID 175 Query: 216 DIPLED-IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++ ++IDT RASG+GGQHVN T SA+RITH+PTGI+V +E+SQH N+ +AM++L Sbjct: 176 IEIADEELKIDTYRASGAGGQHVNKTSSAIRITHLPTGIVVQCQNERSQHFNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 + +L ++ + A + S R ++ +IR+Y + DHR N + VL Sbjct: 236 KVKLQLLKEQEQAEKVSDIR-GEVKEIGFGNQIRSYVMQPYTMVKDHRTNEECSNVTAVL 294 Query: 333 QGYIDDIINPLLT 345 G ID IN L Sbjct: 295 DGGIDMFINAYLK 307 >gi|156844661|ref|XP_001645392.1| hypothetical protein Kpol_534p13 [Vanderwaltozyma polyspora DSM 70294] gi|156116054|gb|EDO17534.1| hypothetical protein Kpol_534p13 [Vanderwaltozyma polyspora DSM 70294] Length = 404 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 132/360 (36%), Positives = 205/360 (56%), Gaps = 16/360 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ + +++ M + + D ++ ++YA S I Y + + + L+ +I Sbjct: 44 QKAESYCDELDKLKKDMFDGNAFD--VEQQKKYARFSTIADAFHEYKSQLDDYKGLNEMI 101 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 SD ++D A E+ + + + + LLP DK CI+E+R G GG EA Sbjct: 102 K---SDPALKDEASQELEQLIPLLNRSSSVLLDKLLPPHEFADKPCIIELRPGVGGIEAM 158 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRV 185 +F DL MY YA +KWK E++S ++N+ G G + + +I+ G + RM+ E GVHRV Sbjct: 159 IFAQDLLNMYIGYATSKKWKHEIISRNENESGSGIVDAILSINEPGAYDRMRLEVGVHRV 218 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAE--------IDVDIPLEDIRIDTMRASGSGGQHV 237 QRVPATE GR HTS A V VLP+ + ++IRID MRA G GGQHV Sbjct: 219 QRVPATETKGRTHTSTAAVVVLPQLGNGSEREAEAYERTFKPDEIRIDVMRARGKGGQHV 278 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+TH P+GI+++ E+SQH+N+ +A +L+++L ++ER + + RK Q Sbjct: 279 NTTDSAVRLTHFPSGIVISMQDERSQHKNKAKAFAILKSKLAEIERLEKEEKERSARKEQ 338 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 + + DRS++IRTYN+ Q RITDHR LTLY L V+ G +D++++ + + Sbjct: 339 VSTTDRSDKIRTYNYPQNRITDHRCGLTLYALNEVITGERLDEVMDVVKAHDTDERSQRL 398 >gi|315657060|ref|ZP_07909945.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492452|gb|EFU82058.1| peptide chain release factor RF2 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 376 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 165/345 (47%), Gaps = 6/345 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L + A++ + + D + ++S + + + + D+ ++ Sbjct: 28 ELLTQKIADLTQQAAAPDLWDDQEHAQKVTQSLSAAQADMQRLQKMRARIDDMEALVELG 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E RD + + +++ + + L D++ ++ IR+G GG +AA F Sbjct: 88 AEESGEDRDAILADAEQTYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + +VL +S ++ G K + + + + E+G HR+ RV Sbjct: 148 AQMLLRMYLRYCERHHYATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARV 207 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A V V+P +++P DI+ID R+SG GGQ VNTTDSAVR+T Sbjct: 208 SPFNAAGKRQTSFAAVEVIPLIETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLT 267 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+++ EKSQ QNR AM+VL++RL + ++ +++ S +++ Sbjct: 268 HLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLMLRHQQEHDKKKELAGDVKAS--WGDQM 325 Query: 307 RTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R+Y + Q + D R + V G +D I+ + + + Sbjct: 326 RSYFLYGQQLVKDLRTGYESGNPDSVFDGDLDGFIDAAIRWRKHQ 370 >gi|161507200|ref|YP_001577154.1| peptide chain release factor 2 [Lactobacillus helveticus DPC 4571] gi|160348189|gb|ABX26863.1| Peptide chain release factor 2 [Lactobacillus helveticus DPC 4571] gi|328461868|gb|EGF34090.1| peptide chain release factor 2 [Lactobacillus helveticus MTCC 5463] Length = 332 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 104/329 (31%), Positives = 165/329 (50%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ++ D + + + + K + + +Q+ +D + +E Q E Sbjct: 1 MMQTGFWDDQEGAQKLISDNNLLKEKRDSFLKLQQDYED--ELTALELLRAEPDADLQQE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V K+++E + LL D + +LEI G GG+EA + LFRMY+RY Sbjct: 59 VETDLKDLQEAFHNYELDLLLSGKYDSHNALLEIHPGAGGTEAMDWGQMLFRMYQRYCDA 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K E+ ++ G K + ISG + +K E+GVHR+ R+ +A+ R HTS A Sbjct: 119 AGFKFEINDYEPGEEAGLKSVSVRISGNNAYGMLKSENGVHRLVRISPFDAAKRRHTSFA 178 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F + Sbjct: 239 SQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYNLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + V+ G + I L Sbjct: 296 DLRTGYETADVNGVMDGKLQPFIYSYLQW 324 >gi|312199813|ref|YP_004019874.1| peptide chain release factor 2 [Frankia sp. EuI1c] gi|311231149|gb|ADP84004.1| peptide chain release factor 2 [Frankia sp. EuI1c] Length = 367 Score = 196 bits (497), Expect = 6e-48, Method: Composition-based stats. Identities = 102/347 (29%), Positives = 161/347 (46%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R A++E S+ + +S + IS + + ++ T Sbjct: 24 DVEGLRRRAADLEQEASDPDLWSDQDRAQVVTRKLSSVRGDISRVEGLRDRLDNIMTAFE 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D Q+ LA + + + L D++ I+++ AG GG +AA Sbjct: 84 LEDDDLISEATGQLPTLARDI------STLEVRTLLSGEYDERDAIVQLSAGAGGVDAAD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV SS+ ++ G K + + ++ E GVHR+ R Sbjct: 138 WTAMLLRMYLRWAERHGYSTEVYDSSEAEEAGLKSATFLVKAPYAYGTLRSEHGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V + P VDI +D+R+D R+SG GGQ VNTTDSAVRI Sbjct: 198 ISPFDNQNRRQTSFAGVEITPVVELSDHVDIDDKDLRVDIFRSSGPGGQGVNTTDSAVRI 257 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R A E+ + G Sbjct: 258 THLPTGIVVTCQNERSQLQNKAAAMVVLQAKLLERRRAEEAAEKQRLTGGPQDVSFG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y + + D R + VL G IDD I+ + ++ Sbjct: 315 SQIRNYVLHPYQMVKDLRTEVETSNTGGVLDGEIDDFIDAEVRWRRS 361 >gi|324997823|ref|ZP_08118935.1| peptide chain release factor 2 [Pseudonocardia sp. P1] Length = 368 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 93/342 (27%), Positives = 150/342 (43%), Gaps = 8/342 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L+ E+ + D + + ++ + D ++ DL + Sbjct: 28 LRQEIEELSEQAGRPDLWDDVEAAQKITSRLAYAQGDLRRLDDLRRRLDDLPVLYELAED 87 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + +A + + L D++ ++ IR+ GG +AA F Sbjct: 88 EGDQAAVADADADRARLRSEI--ASLEVRTLLSGEYDEREALVTIRSEAGGIDAADFAEM 145 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + +V +S ++ G K + F + E+G HR+ R+ Sbjct: 146 LLRMYLRWAERHGYGTDVFETSYAEEAGIKSATFAVHAPYAFGTLSVEAGTHRLVRISPF 205 Query: 192 EASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 + GR TS A V V + V+I +D+R+D RASG GGQ VNTTDSAVR+THIP Sbjct: 206 DNQGRRQTSFAGVEVAPVVESSDHVEIDEKDLRVDVFRASGPGGQGVNTTDSAVRLTHIP 265 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+V +E+SQ QN+ AM VL+A+L D R+ + + G+ ++R Y Sbjct: 266 TGIVVACQNERSQLQNKASAMVVLQAKLLDRRRQEERELMDSFKDSGSSWGN---QMRNY 322 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + + D R VL G IDD I + + + Sbjct: 323 VLHPYQLVKDLRTEHEEGNPSQVLDGEIDDFIEAGIRWRRQQ 364 >gi|289425462|ref|ZP_06427239.1| peptide chain release factor 2 [Propionibacterium acnes SK187] gi|289154440|gb|EFD03128.1| peptide chain release factor 2 [Propionibacterium acnes SK187] gi|313771879|gb|EFS37845.1| peptide chain release factor 2 [Propionibacterium acnes HL074PA1] gi|313807112|gb|EFS45607.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA2] gi|313809604|gb|EFS47340.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA1] gi|313813321|gb|EFS51035.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA1] gi|313819308|gb|EFS57022.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA2] gi|313819957|gb|EFS57671.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA1] gi|313823250|gb|EFS60964.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA2] gi|313824962|gb|EFS62676.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA1] gi|313829923|gb|EFS67637.1| peptide chain release factor 2 [Propionibacterium acnes HL007PA1] gi|313833072|gb|EFS70786.1| peptide chain release factor 2 [Propionibacterium acnes HL056PA1] gi|314924796|gb|EFS88627.1| peptide chain release factor 2 [Propionibacterium acnes HL036PA3] gi|314960646|gb|EFT04748.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA2] gi|314972908|gb|EFT17005.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA1] gi|314975668|gb|EFT19763.1| peptide chain release factor 2 [Propionibacterium acnes HL045PA1] gi|314978052|gb|EFT22146.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA2] gi|314984148|gb|EFT28240.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA1] gi|314989571|gb|EFT33662.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA3] gi|315080944|gb|EFT52920.1| peptide chain release factor 2 [Propionibacterium acnes HL078PA1] gi|315084867|gb|EFT56843.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA2] gi|315086040|gb|EFT58016.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA3] gi|315088241|gb|EFT60217.1| peptide chain release factor 2 [Propionibacterium acnes HL072PA1] gi|315095727|gb|EFT67703.1| peptide chain release factor 2 [Propionibacterium acnes HL038PA1] gi|315105991|gb|EFT77967.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA1] gi|327327935|gb|EGE69709.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA3] gi|327330072|gb|EGE71825.1| peptide chain release factor 2 [Propionibacterium acnes HL096PA2] gi|327442693|gb|EGE89347.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA1] gi|327443908|gb|EGE90562.1| peptide chain release factor 2 [Propionibacterium acnes HL043PA2] gi|327443976|gb|EGE90630.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA2] gi|328754956|gb|EGF68572.1| peptide chain release factor 2 [Propionibacterium acnes HL020PA1] gi|328761406|gb|EGF74932.1| peptide chain release factor 2 [Propionibacterium acnes HL099PA1] Length = 371 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +AA F Sbjct: 90 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 148 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 268 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 324 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 325 SYVLHPYQMVKDLRTNHEVGNTDAV 349 >gi|314986213|gb|EFT30305.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA2] Length = 371 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 93/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +A+ F Sbjct: 90 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDASDFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 148 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 268 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 324 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 325 SYVLHPYQMVKDLRTNHEVGNTDAV 349 >gi|313891989|ref|ZP_07825590.1| peptide chain release factor 2 [Dialister microaerophilus UPII 345-E] gi|313119632|gb|EFR42823.1| peptide chain release factor 2 [Dialister microaerophilus UPII 345-E] Length = 342 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 97/337 (28%), Positives = 171/337 (50%), Gaps = 6/337 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK +++MS+ D K + Y + + + L ++ Sbjct: 4 LKETIRSYDIQMSDPSFWDDSEKARAISQKATQAKDAYETYTKLFERAESLQELLDMAIE 63 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + + ++ +E+ + N+ LL + D + I+ AG GG+EA + Sbjct: 64 EDD--QGMEGDLKQEIEELSAILNKKEIELLLNEEYDTNNAIITFHAGAGGTEAQDWTEM 121 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY ++A + +E L+ D+ G K I G + +K E GVHR+ R+ Sbjct: 122 LIRMYIKWAESEGYGIEELNMLPGDEAGIKSAEYIIKGEFAYGLLKSEKGVHRLVRISPF 181 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +A+ R HTS + V V+PE + +I+VD+ + D+R+D RASG+GGQHVN T SAVR+TH+P Sbjct: 182 DAAKRRHTSFSAVDVMPEISDDIEVDLNMNDVRVDYYRASGAGGQHVNKTSSAVRMTHLP 241 Query: 251 TGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI+ +E+SQ QN+ + +++LRA+L+++E K+ + + Q + +IR+Y Sbjct: 242 TGIVAACQNERSQTQNKEQCLRILRAKLFELEMKKHEQLKKNIQGEQQA-IEWGSQIRSY 300 Query: 310 NFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 F + D+R + ++ V+ G ++ I L Sbjct: 301 VFQPYTLVKDNRTGVETGNVQAVMDGDLNPFIEGFLK 337 >gi|157148427|ref|YP_001455746.1| hypothetical protein CKO_04252 [Citrobacter koseri ATCC BAA-895] gi|157085632|gb|ABV15310.1| hypothetical protein CKO_04252 [Citrobacter koseri ATCC BAA-895] Length = 293 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 103/297 (34%), Positives = 163/297 (54%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ L + + + + + A + E ++ + + D C Sbjct: 3 QGLEDVSGLLELAVEADDEETFNEAV-----AELDTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K + ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLERMYLRWAEARGFKTEIIEESEGEVAGIKSVTIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 291 >gi|163759373|ref|ZP_02166459.1| peptide chain release factor 2 [Hoeflea phototrophica DFL-43] gi|162283777|gb|EDQ34062.1| peptide chain release factor 2 [Hoeflea phototrophica DFL-43] Length = 321 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 153/317 (48%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + + + + +L + + +R+ + Sbjct: 1 MRERQQLEDSINGLKRTEAQLSDNLELIEMGEEEGDSDIVREAEAALKELRADVTK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ +G GG+E+ + L RMY R+A KVE+L D Sbjct: 57 -QQIESLLSGEADANDTYLEVHSGAGGTESQDWANMLLRMYTRWAERSGMKVELLEIHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ ++ R HTS +++ P ID Sbjct: 116 EEAGIKSATLLIKGHNAYGWLKTESGVHRLVRISPYDSQARRHTSFSSIWTYPVIDDSID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 VDI + RIDT RASG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+NR +A +L Sbjct: 176 VDINESECRIDTYRASGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWDML 235 Query: 274 RARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RAR+Y+ E K+ + A K +IG G +IR+Y + + D R + Sbjct: 236 RARIYEAELKKREEAANDEAASKTEIGWG---HQIRSYVLQPYQLVKDLRTGTESTSPQD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGKLDPFMEAALAQR 309 >gi|325299167|ref|YP_004259084.1| Class I peptide chain release factor [Bacteroides salanitronis DSM 18170] gi|324318720|gb|ADY36611.1| Class I peptide chain release factor [Bacteroides salanitronis DSM 18170] Length = 371 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+K R + E ++ D K + + + Sbjct: 1 MITTDQLKDIKERTEALYRYLDIENKKVQVEEEQLRTQAPGFWDDAKKAEAQMKKVKTLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y++ K +L + + + +K + ELE + Sbjct: 61 GWIDGYNEVKTLADELELAFDFYKDELVSEAEVDEAYVQAQKAVEELELKNMLRSEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ G K + Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYMRWAESHGYKLSVANLQEGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + + D Sbjct: 177 IEGAYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVTVEPARLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|183599838|ref|ZP_02961331.1| hypothetical protein PROSTU_03355 [Providencia stuartii ATCC 25827] gi|188022110|gb|EDU60150.1| hypothetical protein PROSTU_03355 [Providencia stuartii ATCC 25827] Length = 293 Score = 195 bits (496), Expect = 7e-48, Method: Composition-based stats. Identities = 101/297 (34%), Positives = 165/297 (55%), Gaps = 12/297 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q ++ + L + + D + + A E+ ++ ++ +LE + + D C Sbjct: 3 QGLEDVEGLLELAIEA-DDEDTFNEAGEELTQLQAKLEQLE----FRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K + G + Sbjct: 58 IDLQAGSGGTEAQDWASMLMRMYLRWAESKGFKTEIIEESDGDVAGLKSATIKVIGDYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 ++ ESGVHR+ R ++ GR HTS ++ + PE +ID++I D+RID RASG+ Sbjct: 118 GWLRTESGVHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS- 290 GGQHVN T+SAVRITHIPT I+ +++SQH+N+ +AM+ L+A+LY++E ++ ++ Sbjct: 178 GGQHVNKTESAVRITHIPTNIVTQCQNDRSQHKNKDQAMRQLKAKLYELEMQKKNADKQA 237 Query: 291 -ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 238 MEENKSDIGWG---SQIRSYVLDDARIKDLRTGVETRNTQAVLDGDLDKFIEASLKA 291 >gi|88607992|ref|YP_506484.1| peptide chain release factor 2, programmed frameshift [Neorickettsia sennetsu str. Miyayama] gi|123491729|sp|Q2GDG2|RF2_NEOSM RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|88600161|gb|ABD45629.1| peptide chain release factor 2, programmed frameshift [Neorickettsia sennetsu str. Miyayama] Length = 365 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 96/344 (27%), Positives = 172/344 (50%), Gaps = 7/344 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I +R EI+ + + + S I + + + + + DL + Sbjct: 22 QLDIEKKHSRLEEIQALVDSPTLWEDQSRAQLLLKEKSQIETSLKEFKELSIQLDDLIEM 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I + D E + ++ ++E + L D C+LEI++G GG+E+ Sbjct: 82 IELASKDHE--EETMKDLERELLLLKEKIQKKEIECLFSGEADGNDCLLEIQSGAGGTES 139 Query: 126 ALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + L RMY R+A K++V+++ + ++ G K + G+ + + E+GVHR Sbjct: 140 NDWAMMLLRMYTRWAEIYHKFQVQIVDKVEGEETGIKSCTLKVMGKNAYGWARTETGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +A+ + HTS A + V P EI++ I +D++IDT RASG+GGQHVN T+SA Sbjct: 200 LVRISPFDANAKRHTSFAKIFVSPCIEGEINISIDEKDLKIDTYRASGAGGQHVNKTESA 259 Query: 244 VRITHIPTGIMVTSSEKSQHQ-NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 +RITH+P+ I+V S N+ AM++L++RLY++E ++ + +A R ++ G Sbjct: 260 IRITHLPSKIVVQSQSSRSQHQNKAEAMQMLKSRLYEIELRKKEEKLNAARNVEDSIG-W 318 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + I D R + + VL G +D I ++ Sbjct: 319 GYQIRSYVLHPYQMIKDLRTGHEVGNITSVLDGDLDSFIIATIS 362 >gi|255994191|ref|ZP_05427326.1| peptide chain release factor 2 [Eubacterium saphenum ATCC 49989] gi|255993859|gb|EEU03948.1| peptide chain release factor 2 [Eubacterium saphenum ATCC 49989] Length = 320 Score = 195 bits (496), Expect = 8e-48, Method: Composition-based stats. Identities = 98/312 (31%), Positives = 159/312 (50%), Gaps = 12/312 (3%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 L +E + ++S+ + + L ++ + + ++ LA +E +L Sbjct: 6 LLKEKQEVEVVVSQYDELLLLIDDAKTLQAMVSEGLVEEDMEMLATDIFKKLEAGYHKL- 64 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D + + I +G+GGS+A + L RMY R+A + ++++V+ + Sbjct: 65 ---KVTTLLAGKHDKANAYISIHSGSGGSDAQDWGKMLLRMYTRWAENKGFQIDVIDLNQ 121 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID 214 N G+K I G + +K E GVHR+ R+ ++S R HTS A+V V+PE Sbjct: 122 NGVAGFKSATLLIKGLNAYGYLKKERGVHRLVRISPFDSSSRRHTSFASVDVIPEIKTDK 181 Query: 215 VD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 V I +D+RID RASG+GGQHVN TDSAVRI H+PT I+V +E+SQH N+ AM + Sbjct: 182 VIKIDDKDLRIDKFRASGAGGQHVNKTDSAVRIIHLPTKIVVTCQNERSQHMNKEAAMHM 241 Query: 273 LRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 L ++L +++ K + QI G +IR+Y F R + DHR + ++ Sbjct: 242 LISKLMELKEKEHKESINDLTGDYNQITWG---SQIRSYVFHPYRMVKDHRTGAEMGNVD 298 Query: 330 YVLQGYIDDIIN 341 V+ G +D I Sbjct: 299 AVMDGDLDYFIQ 310 >gi|255535765|ref|YP_003096136.1| Peptide chain release factor 2 [Flavobacteriaceae bacterium 3519-10] gi|255341961|gb|ACU08074.1| Peptide chain release factor 2 [Flavobacteriaceae bacterium 3519-10] Length = 370 Score = 195 bits (495), Expect = 8e-48, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 167/345 (48%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 QI K + E + D + ++ Y++ +D+ ++ Sbjct: 22 QIEKKKIEISNDEEKTLSPEFWDKPKDAEIFMKQLRSKKKWVTDYEEIFSRLEDIQVLME 81 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + ++I +LE + + + D+ S +L+I AG GG+E+ Sbjct: 82 FAKEDPDSEKELDEAFPVLLEKIEDLE----FKNMLSNEGDELSAVLQITAGAGGTESCD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY +A + +K+ L+ + D G K + I G F ++ E+GVHR+ R Sbjct: 138 WASMLMRMYTMWAEKQGYKLRELNYQEGDVAGIKTVTLEIDGEFAFGYLRGENGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + +++ + HTS +V V P I+++I DI +TMR+SG+GGQ+VN ++AVR+ Sbjct: 198 ISPFDSNAKRHTSFVSVYVYPLVDDTIEININPADISFETMRSSGAGGQNVNKVETAVRL 257 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRS 303 H PTGI++ S +SQ QN+ +AM++LR+RLY++E + R+ K++I G Sbjct: 258 RHAPTGIIIENSESRSQLQNKEKAMQLLRSRLYEMELEERMKARNEIEAGKMKIEWG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y + + D R ++ V+ G + + L + Sbjct: 315 SQIRNYVMHPYKLVKDVRSGHETSDVDAVMNGELTPFLKAFLMSD 359 >gi|50842838|ref|YP_056065.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202] gi|289426937|ref|ZP_06428661.1| peptide chain release factor 2 [Propionibacterium acnes J165] gi|295130890|ref|YP_003581553.1| peptide chain release factor 2 [Propionibacterium acnes SK137] gi|81611548|sp|Q6A808|RF2_PROAC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|50840440|gb|AAT83107.1| peptide chain release factor 2 [Propionibacterium acnes KPA171202] gi|289159877|gb|EFD08057.1| peptide chain release factor 2 [Propionibacterium acnes J165] gi|291375816|gb|ADD99670.1| peptide chain release factor 2 [Propionibacterium acnes SK137] gi|332675771|gb|AEE72587.1| peptide chain release factor 2 [Propionibacterium acnes 266] Length = 368 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 27 EAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 86 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +AA F Sbjct: 87 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 145 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 205 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 265 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 321 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 322 SYVLHPYQMVKDLRTNHEVGNTDAV 346 >gi|73946154|ref|XP_541157.2| PREDICTED: similar to mitochondrial translational release factor 1-like [Canis familiaris] Length = 280 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 127/266 (47%), Positives = 175/266 (65%), Gaps = 3/266 (1%) Query: 92 ELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS 151 L +I LL+P + D ILE+ AG GG EA LF ++F MY++YAA ++W E L Sbjct: 9 FLYLQIILLLVPSEETDKNDLILEVTAGVGGQEAMLFTSEMFDMYQQYAAFKRWHFETLE 68 Query: 152 SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 ++ GG + A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ Sbjct: 69 YFPSEIGGLRHASASIGGLEAYKHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPT 128 Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAM 270 EI++ I +D+RI T RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR AM Sbjct: 129 EINLVINPKDLRIHTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREMAM 188 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 K LRA+LY + + ++R + RK+Q+G+ RSE+IRTYNF Q R+TDHRIN +L+ LE Sbjct: 189 KKLRAKLYSMYLEEETSKRYSARKIQVGTKGRSEKIRTYNFPQNRVTDHRINKSLHDLET 248 Query: 331 VLQGY--IDDIINPLLTAHQAKMIGS 354 +QG +D+++ L + + Sbjct: 249 FMQGEYLLDELVQSLKDYADYESLVE 274 >gi|197335699|ref|YP_002155207.1| peptide chain release factor 2 [Vibrio fischeri MJ11] gi|197317189|gb|ACH66636.1| peptide chain release factor 2 [Vibrio fischeri MJ11] Length = 248 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 147/248 (59%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C +++++G+GG+EA + + RMY R+A + +KVEV+ S+ + G K Sbjct: 1 MFSGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFKVEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I+G + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI Sbjct: 61 GATVRIAGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNIQIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT I+V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNIVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 YELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|291515566|emb|CBK64776.1| bacterial peptide chain release factor 2 (bRF-2) [Alistipes shahii WAL 8301] Length = 370 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 98/376 (26%), Positives = 165/376 (43%), Gaps = 35/376 (9%) Query: 3 FLSHKQICDLKNRFAEIE----------------LRMSESPSVDAYIKLTEEYAAISPII 46 + +QI +++ R +E + E D K E+ ++ I Sbjct: 1 MVLAEQIKEIEQRREALERCLDIDQKRIDLRNEEEKTQEPNFWDNPDKAREQLRKVAGIK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + + YD +++ +DL + + A ++I +LE + + Sbjct: 61 AWVEDYDAIRKDAEDLQLMPDFVKEGVVSEEEMDAHYAATLEKIEKLE----MRNMLRRD 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D IL+I AG GG+EA + L RMY R+ +KV+VL D+ G K Sbjct: 117 EDKLGAILDINAGAGGTEALDWASMLMRMYTRWGEAHGYKVKVLDFQAGDEVGVKSCTLE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRID 225 G + +K E+GVHR+ R+ A+ + T+ A+V V P + DI D Sbjct: 177 FEGEYAYGYLKSENGVHRMVRLSPFNANNKRQTTFASVFVSPAVDDTIEITVNAADIEWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN ++AVR+ + ++ +SQ NR AM++LR++ Sbjct: 237 TFRSSGAGGQNVNKVETAVRLRYHAKDPDTGEAIEYLIENMETRSQLMNRENAMRILRSK 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LY E + + A K +I G +IR+Y F R+ DHR + +E V+ G Sbjct: 297 LYQRELDKRMATQQALEASKKKIEWG---SQIRSYVFDDRRVKDHRTGVQTSAVESVMDG 353 Query: 335 YIDDIINPLLTAHQAK 350 +D I L + A+ Sbjct: 354 DLDAFIKAYLMEYGAQ 369 >gi|330997843|ref|ZP_08321678.1| putative peptide chain release factor 2 [Paraprevotella xylaniphila YIT 11841] gi|329569731|gb|EGG51496.1| putative peptide chain release factor 2 [Paraprevotella xylaniphila YIT 11841] Length = 370 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 85/372 (22%), Positives = 154/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D E+ + + Sbjct: 1 MITIEQLKDIKTRTEALYRYLDIENKKIQVEEEQLRTQAPGFWDDAKAAEEQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + K +L + + + + +LE + Sbjct: 61 KWIDGYKEVKTLCDELELAFDFYKEEMVTEEEVDGLYSRTVDALEDLELRNM----LRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY R+A +K + + D D+ G K + Sbjct: 117 EDPMDAVLKINSGAGGTESQDWASMLMRMYMRWAESHGYKCTISNYQDGDEAGIKTVTMQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P + + D Sbjct: 177 IEGEFAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVYVDPSRVSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 R+ G+GGQ+VN ++ VR+ + ++ + + Q +NR AM++L+++ Sbjct: 237 LFRSGGAGGQNVNKVETGVRLRYQYKDPDTGEEEEILIENTESRKQLENRENAMRLLKSQ 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD ++ +++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDRALQKRKAKQAEIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 +D I L Sbjct: 354 KLDGFIKSYLME 365 >gi|89897615|ref|YP_521102.1| hypothetical protein DSY4869 [Desulfitobacterium hafniense Y51] gi|89337063|dbj|BAE86658.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 315 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 118/319 (36%), Positives = 173/319 (54%), Gaps = 15/319 (4%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGD--HNSDSEIRDLAQIEVLAIEKEIRELENE 96 +S K+ Y +Q+ DL T+ D + + +LA+++ + LE Sbjct: 2 MQELSYQQEKVKTYYTLQQQLDDLLTLYQMAVEEKDESLEPELEEGILALQQRLDGLEL- 60 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 +L D + I+ + AG GG+EA +V L+RMY RY +KVE + D Sbjct: 61 ---EILLSGPYDRNNAIVTLHAGAGGTEAQDWVSMLYRMYIRYGERHGYKVETMDFLPGD 117 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 + G K + +G F +K E GVHR+ R+ +ASGR HTS A+V V+PE E + + Sbjct: 118 EAGIKSATLSFAGENAFGYLKAEKGVHRLVRISPFDASGRRHTSFASVDVIPEVMEDNAE 177 Query: 217 --IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 IP ED+++DT RASG+GGQHVN T SAVRITH+PTGI+V + SE+SQ QNR +++L Sbjct: 178 IQIPPEDLKVDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQSQSERSQIQNRAYCLRIL 237 Query: 274 RARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEY 330 +A+L +++RK+ +E S R Q I G +IR+Y F + DHR N Sbjct: 238 QAKLLELKRKQQEDEISEIRGEQQEIAWG---SQIRSYVFHPYNMVKDHRTNEETANTGA 294 Query: 331 VLQGYIDDIINPLLTAHQA 349 V+ G ID I L +A Sbjct: 295 VMDGEIDQFIAAYLQKTKA 313 >gi|258648792|ref|ZP_05736261.1| peptide chain release factor 2 [Prevotella tannerae ATCC 51259] gi|260851127|gb|EEX70996.1| peptide chain release factor 2 [Prevotella tannerae ATCC 51259] Length = 371 Score = 195 bits (495), Expect = 9e-48, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 156/373 (41%), Gaps = 35/373 (9%) Query: 3 FLSHKQICDLKNRFA-------------EIELR---MSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R E+E D + E+ + I Sbjct: 1 MITADQLKDVQTRAEALHKYLDIDAKRVELEEEQLRTQAPDFWDDPKRAEEQMKKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y+ +L T + + + + I LE + + Sbjct: 61 KWVIDYNDVCLLVGELETAFEFYKDELVTEEEVDADYQKAIDAIEALEL----RNMLRGE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY RYA + +K + + D D+ G K + Sbjct: 117 EDSMDAVLKINSGAGGTESQDWASMLMRMYLRYAEAQGYKTRISNLQDGDEAGIKTVTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P + I D Sbjct: 177 IEGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDNIEVYVDPSKISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 R+ G+GGQ+VN ++ VR+ + T ++ + + Q +NR AM++LR++ Sbjct: 237 LFRSGGAGGQNVNKVETGVRLRYQYTDPDTGETEEILIENTESRKQLENRENAMRLLRSQ 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD ++ ++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDRALQKRRAAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTAH 347 +D I L + Sbjct: 354 KLDGFIKAYLMEN 366 >gi|224025165|ref|ZP_03643531.1| hypothetical protein BACCOPRO_01899 [Bacteroides coprophilus DSM 18228] gi|224018401|gb|EEF76399.1| hypothetical protein BACCOPRO_01899 [Bacteroides coprophilus DSM 18228] Length = 371 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 159/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D K + + + Sbjct: 1 MITIEQLKDVKERTEALHRYLDIDNKKVQVEEEQLRTQAPGFWDDAKKAEAQMKKVKTLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + I Y++ K +L + + + I ELE + Sbjct: 61 NWIEGYNEVKTLADELELSFDFYKDELVTEAEVDDAYNKAMQAIEELELKNMLRSEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ G K + Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYMRWAESNGYKLSVANLQEGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + + D Sbjct: 177 IEGSYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVTVEPARLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] gi|254040430|gb|ACT57226.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 109/344 (31%), Positives = 167/344 (48%), Gaps = 16/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + R + + + + I+ L E + IS I + + + + Sbjct: 17 DNAVQRLSFLNTKTEDPHLWQNVIEAKMLMRERQHLDNAISFIKEIQDRLCD-NLILLEL 75 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D I + I+ E+ + L D LE+ AG GG+E+ Sbjct: 76 ALEEDDCSILQETSDNLQRIKLEVEYK----QFESLLSGEADSNDAYLEVHAGAGGTESQ 131 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A RK+K E L D ++ G K I G + +K E GVHR+ Sbjct: 132 DWANMLLRMYTRWAEKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLV 191 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ +++ R HTS +++ V P I+++I D RIDT RASG+GGQHVNTTDSAVR Sbjct: 192 RISPYDSNSRRHTSFSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVR 251 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDR 302 ITHIPTG++V E+SQH+N+ +A +LRA+LY++E ++ + K +IG G Sbjct: 252 ITHIPTGVVVQCQQERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESSKTEIGWG-- 309 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y + + D R N+ VL G +DD + L Sbjct: 310 -RQIRSYVLQPYQMVKDLRTNIEKTSPSDVLDGDLDDFMKATLA 352 >gi|189485333|ref|YP_001956274.1| peptide chain release factor 2 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287292|dbj|BAG13813.1| peptide chain release factor 2 [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 329 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 110/332 (33%), Positives = 179/332 (53%), Gaps = 10/332 (3%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 E + K + A + + + ++ +E +DL + +++ + +V Sbjct: 2 EPDFWNDQNKAKKTMAELDDLKNVCRLWYDMSREVKDLIDLSMLATDEND--EKLLKDVE 59 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 K++ + + D + I+ I AG GG+E+ + L RMY R+A + Sbjct: 60 DGSKKLEKELSVFEVRTKLGGEHDKNNAIISIHAGAGGTESCDWAQILLRMYSRWAEDKG 119 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +K EV+ S D D+ G K I I G + ++ E GVHR+ R+ +++ R HTS ++V Sbjct: 120 FKTEVVDSLDGDEAGIKNITMIIRGEYAYGFLQSEIGVHRLVRISPFDSNKRRHTSFSSV 179 Query: 205 AVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V+PE ID+ I +DIRIDT RASG+GGQH+N TDSAVRITH+ T I V + +++SQ Sbjct: 180 DVIPEVEDSIDIIIEDKDIRIDTYRASGAGGQHINKTDSAVRITHLATEITVQSQNDRSQ 239 Query: 263 HQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGR-ITDH 319 +NR AMK+L+ARLY++E+++ E+ N K I + S +IR+Y F + + DH Sbjct: 240 IKNRTTAMKLLKARLYELEQEKQRASYEKHYNEKGAI---EWSSQIRSYVFMPYQLVKDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 R +++ V+ G IDD I+ L+ K Sbjct: 297 RTGYKTLRMDLVMDGDIDDFISAYLSWKLEKK 328 >gi|323497777|ref|ZP_08102791.1| peptide chain release factor RF-2 [Vibrio sinaloensis DSM 21326] gi|323317124|gb|EGA70121.1| peptide chain release factor RF-2 [Vibrio sinaloensis DSM 21326] Length = 248 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C +++++G+GG+EA + + RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGDHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFKTEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI Sbjct: 61 GATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNIQIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LEIQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|257125766|ref|YP_003163880.1| peptide chain release factor 2 [Leptotrichia buccalis C-1013-b] gi|257049705|gb|ACV38889.1| bacterial peptide chain release factor 2 (bRF- 2) [Leptotrichia buccalis C-1013-b] Length = 364 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 115/343 (33%), Positives = 176/343 (51%), Gaps = 8/343 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H + +LK +E + E + E IS + YD +D+ T+ Sbjct: 23 HLDLENLKIEIENLEKQTFEPDFWN-AENSQEILKNISAKKKMLEEYDNLNGLFEDVSTI 81 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I + + K++ + LL + D + IL I +G GG+EA Sbjct: 82 IEFIEMGDNSFENELEQK---AKKLENEIDNFKTKLLLDEEYDTNNAILTINSGAGGTEA 138 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY+R+A +KVEVL S ++ G K I I G + +K E GVHR+ Sbjct: 139 CDWAEMLYRMYDRWANRHNFKVEVLDSLAGEEAGIKSITLNIKGSYAYGYLKGEKGVHRL 198 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS A V V PE + +++I ED++IDT RASG+GGQHVNTTDSAV Sbjct: 199 VRISPFDSNARRHTSFAAVNVTPEIEDDVEINIRTEDLKIDTYRASGAGGQHVNTTDSAV 258 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPT +V +E+SQ +NR AMK+L+++L+++E ++ E + + + + Sbjct: 259 RITHIPTNTVVTCQNERSQLKNRETAMKILKSKLFELELEKREKEMAELKGTE-SKIEWG 317 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR +E V+ G ID IN L Sbjct: 318 SQIRSYVFQPYKMVKDHRTKAEEGNVEKVMDGDIDLFINEYLK 360 >gi|323491501|ref|ZP_08096683.1| peptide chain release factor RF-2 [Vibrio brasiliensis LMG 20546] gi|323314255|gb|EGA67337.1| peptide chain release factor RF-2 [Vibrio brasiliensis LMG 20546] Length = 248 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C +++++G+GG+EA + + RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGDHDSSDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFKTEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI Sbjct: 61 GATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNIQIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LEIQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|325860237|ref|ZP_08173362.1| putative peptide chain release factor 2 [Prevotella denticola CRIS 18C-A] gi|325482324|gb|EGC85332.1| putative peptide chain release factor 2 [Prevotella denticola CRIS 18C-A] Length = 371 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R F E +LR D + E+ + I Sbjct: 1 MITADQLKDIQVRTDALHRYLDIDRKRIEFEEEQLRTQAPDFWDDPKRAQEQMKKVKDIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I YD+ + ++ + + + K I +LE + + Sbjct: 61 KWIKGYDEARSLTEETQLAFDFYKDELVTEEEVDAAYAKALKVIEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV V + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAHGYKVTVSDIQEGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRIEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G ID I L Sbjct: 354 GKIDAFIKAYLME 366 >gi|327312646|ref|YP_004328083.1| putative peptide chain release factor 2 [Prevotella denticola F0289] gi|326945641|gb|AEA21526.1| putative peptide chain release factor 2 [Prevotella denticola F0289] Length = 371 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R F E +LR D + E+ + I Sbjct: 1 MITADQLKDIQVRTDALHRYLDIDRKRIEFEEEQLRTQAPDFWDDPKRAQEQMKKVKDIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I YD+ + ++ + + + K I +LE + + Sbjct: 61 KWIKGYDEARSLTEETQLAFDFYKDELVTEEEVDAAYAKALKVIEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV V + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWASMLMRMYMRWGEAHGYKVTVSDIQEGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ E++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRMEEQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G ID I L Sbjct: 354 GKIDAFIKAYLME 366 >gi|254284237|ref|ZP_04959205.1| peptide chain release factor 2 [gamma proteobacterium NOR51-B] gi|219680440|gb|EED36789.1| peptide chain release factor 2 [gamma proteobacterium NOR51-B] Length = 280 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 105/285 (36%), Positives = 153/285 (53%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E ++ + + + LE + + DD + L+I+AG+GG+EA Sbjct: 1 MAASEDDEETVQAVTDDMANLMQALEALE----FRRMFSGEMDDANAFLDIQAGSGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ R +K ++ S D G K G F ++ E+GVHR+ Sbjct: 57 QDWAEMLLRMYLRWGESRGFKTTLVEVSAGDVAGIKSATIQFEGEYPFGWIRTETGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS A+V V PE ID++I D+R+DT R+SG+GGQHVNTTDSAV Sbjct: 117 VRKSPFDSGNRRHTSFASVFVSPEVDDNIDIEINPADLRVDTYRSSGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+PT ++ +E+SQHQNR RAMK LRA+LY++E ++ E + K IG G Sbjct: 177 RITHVPTNVVASCQTERSQHQNRDRAMKQLRAKLYELEIQKRNAEAQAMEDSKADIGWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + + VL G +D I L Sbjct: 236 --SQIRSYVLDDSRIKDLRTGVETHNTQAVLDGDLDQFIEASLKQ 278 >gi|329964588|ref|ZP_08301642.1| putative peptide chain release factor 2 [Bacteroides fluxus YIT 12057] gi|328524988|gb|EGF52040.1| putative peptide chain release factor 2 [Bacteroides fluxus YIT 12057] Length = 371 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 160/372 (43%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + D + + + Sbjct: 1 MITAEQLKDIKERAEALNRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y++ K ++L + + + + + LE + Sbjct: 61 QWISGYNEVKTLAEELQLSFDFYKDELVTEEEVDEAYVKASAAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETYGYKAVISNLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+V+I + +I D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNINVANISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|323466941|gb|ADX70628.1| Peptide chain release factor 2 [Lactobacillus helveticus H10] Length = 332 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 104/329 (31%), Positives = 164/329 (49%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M + D + + + + K + + +Q+ +D + +E Q E Sbjct: 1 MMQPGFWDDQEGAQKLISDNNLLKEKRDSFLKLQQDYED--ELTALELLRAEPDADLQQE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V K+++E + LL D + +LEI G GG+EA + LFRMY+RY Sbjct: 59 VETDLKDLQEAFHNYELDLLLSGKYDSHNALLEIHPGAGGTEAMDWGQMLFRMYQRYCDA 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K E+ ++ G K + ISG + +K E+GVHR+ R+ +A+ R HTS A Sbjct: 119 AGFKFEINDYEPGEEAGLKSVSVRISGNNAYGMLKSENGVHRLVRISPFDATKRRHTSFA 178 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F + Sbjct: 239 SQLQNRETAMNELRAKLFHLEEEKKQKQKQALKGDQKEIGWG---SQIRSYVFHPYNLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + V+ G + I L Sbjct: 296 DLRTGYETADVNGVMDGKLQPFIYSYLQW 324 >gi|251792904|ref|YP_003007630.1| peptide chain release factor 2 (RF-2) [Aggregatibacter aphrophilus NJ8700] gi|247534297|gb|ACS97543.1| peptide chain release factor 2 (RF-2) [Aggregatibacter aphrophilus NJ8700] Length = 289 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 95/294 (32%), Positives = 157/294 (53%), Gaps = 12/294 (4%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ L + + ++ + A E+ + ++ + + D C +++ Sbjct: 2 EDVDGLLELAVEAEDEATFNEAV-----AELDELEQQLAKLEFRRMFSGEHDACDCYVDL 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 +AG+GG+EA + L RMY R+A + +K E++ SD D G K +SG F + Sbjct: 57 QAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGVKSATIRVSGEYAFGWL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQ 235 + E+G+HR+ R +++ R HTS + V PE + D+RID RASG+GGQ Sbjct: 117 RTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 HVN T+SAVRITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + Sbjct: 177 HVNKTESAVRITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMED 236 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + + VL G +D I L A Sbjct: 237 NKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 287 >gi|313792395|gb|EFS40490.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA1] gi|313801469|gb|EFS42718.1| peptide chain release factor 2 [Propionibacterium acnes HL110PA2] gi|313838232|gb|EFS75946.1| peptide chain release factor 2 [Propionibacterium acnes HL086PA1] gi|314963179|gb|EFT07279.1| peptide chain release factor 2 [Propionibacterium acnes HL082PA1] gi|315078242|gb|EFT50285.1| peptide chain release factor 2 [Propionibacterium acnes HL053PA2] gi|327453496|gb|EGF00151.1| peptide chain release factor 2 [Propionibacterium acnes HL092PA1] Length = 371 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 94/325 (28%), Positives = 161/325 (49%), Gaps = 8/325 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 AAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D + LA+ ++ + + L D++ ++ IR+ GG +AA F Sbjct: 90 AADDDKESLAEATTETVKLREEI--DALEVRTLLSGQYDEREAVVTIRSEAGGVDAADFA 147 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 148 EMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRIS 207 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+TH Sbjct: 208 PFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLTH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++R Sbjct: 268 LPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QMR 324 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYV 331 +Y + + D R N + + V Sbjct: 325 SYVLHPYQMVKDLRTNHEVGNTDAV 349 >gi|328472050|gb|EGF42927.1| peptide chain release factor 2 [Vibrio parahaemolyticus 10329] Length = 248 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 97/248 (39%), Positives = 145/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + + RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGDHDSSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFKAEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE E +DI Sbjct: 61 SATVRISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEIDENIAIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|148981822|ref|ZP_01816539.1| bacterial peptide chain release factor 2 (RF-2) [Vibrionales bacterium SWAT-3] gi|145960730|gb|EDK26070.1| bacterial peptide chain release factor 2 (RF-2) [Vibrionales bacterium SWAT-3] Length = 248 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 96/248 (38%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C +++++G+GG+EA + + RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGEHDASDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFKTEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +DI Sbjct: 61 GATVRISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNITIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LEIQKQNAEKQANEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|315655086|ref|ZP_07907988.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 51333] gi|315490567|gb|EFU80190.1| peptide chain release factor RF2 [Mobiluncus curtisii ATCC 51333] Length = 376 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 92/345 (26%), Positives = 164/345 (47%), Gaps = 6/345 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 L + A++ + + D + ++S + + + D+ ++ Sbjct: 28 ELLTQKIADLTQQAAAPDLWDDQEHAQKVTQSLSAAQVDMQRLQKMRARIDDMEALVELG 87 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E RD + + +++ + + L D++ ++ IR+G GG +AA F Sbjct: 88 AEEAGEDRDAILADAEQTYETLKQDLDAMEVKTLLNGEYDERFAVVTIRSGAGGVDAADF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY RY + +VL +S ++ G K + + + + E+G HR+ RV Sbjct: 148 AQMLLRMYLRYCERHHYATKVLDTSYAEEAGIKSVTFQVDAPYAYGMLSVEAGTHRLARV 207 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+G+ TS A V V+P +++P DI+ID R+SG GGQ VNTTDSAVR+T Sbjct: 208 SPFNAAGKRQTSFAAVEVIPLIETTDHIEVPESDIKIDVFRSSGPGGQSVNTTDSAVRLT 267 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+++ EKSQ QNR AM+VL++RL + ++ +++ S +++ Sbjct: 268 HLPTGIVISMQDEKSQIQNRAAAMRVLQSRLLMLRHQQEHDKKKELAGDVKAS--WGDQM 325 Query: 307 RTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R+Y + Q + D R + V G +D I+ + + + Sbjct: 326 RSYFLYGQQLVKDLRTGYESGNPDSVFDGDLDGFIDAAIRWRKHQ 370 >gi|306820781|ref|ZP_07454406.1| peptide chain release factor RF2 [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551171|gb|EFM39137.1| peptide chain release factor RF2 [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 316 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 104/301 (34%), Positives = 158/301 (52%), Gaps = 12/301 (3%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 I Y+ K + +D+ + + DS + E +EK L I D Sbjct: 18 IEEYEMVKNKFEDILVLFDFASQDSSFEEELSKETDNLEKITDSLSISIM----LNGQYD 73 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + IL + +GTGG +A + L RMY R+A+ +K+ + +D G K I Sbjct: 74 ANNAILSVHSGTGGLDAQDWTQMLLRMYTRFASNMGFKISYIDLQQDDQSGVKSATLKID 133 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTM 227 G + +K E GVHR+ R+ ++SG+ HTS A+V VLPE I V+I +D+++DT Sbjct: 134 GENAYGYLKCEKGVHRLVRISPFDSSGKRHTSFASVDVLPELDDSIKVEINPKDLKVDTY 193 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG+GGQHVN T+SA+RITHIPTG++V +E+SQ NR AMK+L A+L +++ Sbjct: 194 RSSGAGGQHVNKTESAIRITHIPTGVVVQCQNERSQISNRETAMKMLTAKLIELKELEHK 253 Query: 287 NERSANRK--LQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPL 343 ++ + QI G +IR+Y F + DHR N + + V+ G I IN Sbjct: 254 DKIEDIQGKYSQIAWG---SQIRSYVFQPYTMVKDHRTNYEVGNIGSVMDGDIMPFINAY 310 Query: 344 L 344 L Sbjct: 311 L 311 >gi|332881782|ref|ZP_08449430.1| putative peptide chain release factor 2 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680421|gb|EGJ53370.1| putative peptide chain release factor 2 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 370 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 86/372 (23%), Positives = 155/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D E+ + + Sbjct: 1 MITIEQLKDVKTRTEALYRYLDIENKKIQVEEEQLRTQAPGFWDDAKAAEEQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + K +L + + + + +LE + + Sbjct: 61 KWIDGYKEVKTLCDELELAFDFYKEEMVTEEEVDGLYGRTVDALEDLEL----RNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY R+A +K V + D D+ G K + Sbjct: 117 EDPMDAVLKINSGAGGTESQDWASMLMRMYMRWAESHGYKCTVSNYQDGDEAGIKTVTMQ 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P + + D Sbjct: 177 IEGEFAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVYVDPSRVSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 R+ G+GGQ+VN ++ VR+ + ++ + + Q +NR AM++L+++ Sbjct: 237 LFRSGGAGGQNVNKVETGVRLRYQYKDPDTGEEEEILIENTESRKQLENRENAMRLLKSQ 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD ++ +++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDRALQKRKAKQAEIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 +D I L Sbjct: 354 KLDGFIKSYLME 365 >gi|260911088|ref|ZP_05917720.1| peptide chain release factor RF2 [Prevotella sp. oral taxon 472 str. F0295] gi|260634786|gb|EEX52844.1| peptide chain release factor RF2 [Prevotella sp. oral taxon 472 str. F0295] Length = 394 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 158/374 (42%), Gaps = 36/374 (9%) Query: 2 VFLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPI 45 + ++ Q+ D++ R + + D + E+ + I Sbjct: 22 IMITADQLKDIQERAEALHRYLDIDRKRVELEEEELRTQAPDFWDDPARAQEQMKKVKGI 81 Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 I Y + +Q +L ++ + + + I LE + Sbjct: 82 EKWIVGYKEVRQATDELQLAFDFYHDEMVTEEEVDEDYRKAITAIENLELMNM----LRQ 137 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 +D C+L+I +G GG+E+ + L RMY R+A +V + + + D+ G K + Sbjct: 138 KEDPMDCVLKINSGAGGTESQDWAQMLMRMYMRWAEAHGHRVTISNLQEGDEAGIKSVTM 197 Query: 166 TISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIR 223 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 198 EIEGGEYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVSPLVDDTIEVYVDPSKVS 257 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLR 274 D R+ G+GGQ+VN ++ VR+ + T ++ + + Q +NR AM++L+ Sbjct: 258 WDLFRSGGAGGQNVNKVETGVRLRYQYTDPDTGEEEEILIENTESRKQLENRNNAMRLLK 317 Query: 275 ARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 ++LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 318 SQLYDRAMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTADVDGVM 374 Query: 333 QGYIDDIINPLLTA 346 G IDD I L Sbjct: 375 DGKIDDFIKAYLME 388 >gi|260495130|ref|ZP_05815258.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_33] gi|260197187|gb|EEW94706.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_33] Length = 331 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 118/332 (35%), Positives = 170/332 (51%), Gaps = 11/332 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E E K +E ++ + +S Y++ E +D +I S + Sbjct: 2 EKLTFEENFWSDKRKSSEIIKNMNFEKNIVSRYEKLATEIEDEEVLIDFVESGETSFESE 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 E I K E LL D + I+ I +G GG+EA + L+RMY R+ Sbjct: 62 LSEKHKILKNDV---EEFEINLLLDGEYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRW 118 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 LR +KV L + D G K + + G + +K E GVHR+ R+ +A+ + HT Sbjct: 119 CNLRNYKVTELDFMEGDSVGVKSVTFLVEGINAYGYLKSEKGVHRLVRISPFDANKKRHT 178 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE E +V+I DIRIDT RASG+GGQHVN TDSAVRITH P+GI+V Sbjct: 179 SFASVEVVPEVDENVEVEIDPADIRIDTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQ 238 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG- 314 E+SQ NR AMK+L+++L ++E K+ E + IG G+ +IR+Y F Sbjct: 239 KERSQLSNRETAMKMLKSKLLELEIKKKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYA 295 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N + ++ V+ G IDD IN L Sbjct: 296 LVKDHRTNTEIGNVKAVMDGSIDDFINSYLRW 327 >gi|300726271|ref|ZP_07059724.1| peptide chain release factor 2 [Prevotella bryantii B14] gi|299776468|gb|EFI73025.1| peptide chain release factor 2 [Prevotella bryantii B14] Length = 376 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 96/361 (26%), Positives = 158/361 (43%), Gaps = 20/361 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K F E +LR D E+ + I + Y + +Q +L Sbjct: 23 IDQKKVEFEEEQLRTQAPDFWDDPKYAQEQMKKVKEIQKWLDGYKEVRQYADELQLAFEF 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + K I LE + + +D +L+I +G GG+E+ + Sbjct: 83 YKDEMVTEEEVDDDYAKAIKAIENLEL----KNMLRQEEDSMDAVLKINSGAGGTESQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQR 187 L RMY R+ + V++ + D D+ G K + TI G + +K E+GVHR+ R Sbjct: 139 ASMLMRMYMRWCEAHGYSVKITNMQDGDEAGIKSVEMTIEGGEFAYGFLKSENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P + + DT R+ G+GGQ+VN +S VR+ Sbjct: 199 VSPYNAQGKRMTSFASVFVTPLVDDTIEIYVDPAKVSWDTFRSGGAGGQNVNKVESGVRL 258 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 + ++ + + Q +NR +AM +L+++LYD KR E++ K Sbjct: 259 RYQYEDPDTGEHEEILIENTETRDQPKNRAKAMLLLKSQLYDRALKRKQAEQAKVEAGKK 318 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +I G +IR+Y F R+ DHR N ++ V+ G +D+ I L A SA Sbjct: 319 KIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMDGKLDEFIKSYLMEFAAVDAASA 375 Query: 356 S 356 Sbjct: 376 E 376 >gi|123965444|ref|YP_001010525.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9515] gi|123199810|gb|ABM71418.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT 9515] Length = 354 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 98/343 (28%), Positives = 171/343 (49%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L + E+E +E + + + ++ + D+ K D + Sbjct: 7 DVPSLVAKRKELEQIAAEPDFWINQAAAKKHMLNLDDVRDQLQLLDKWKILIADAEASLE 66 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ D E + +E +RE ++ + L D +S I+ I AG GG++A Sbjct: 67 LYSLDPE--EEMIVESHLGLVTLRENLDKWEFQRLLSGEYDKESAIVSINAGAGGTDAQD 124 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L RMY R+A +E+ S+ ++ G K + ++G+ + ++ E G HR+ R Sbjct: 125 WVEILLRMYSRWADNNGMSLEITDLSNGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVR 184 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A V V+P+ I ++IP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 185 ISPFNANGKRQTSFAGVEVMPKLDQSISLEIPDKDLEITTSRSGGAGGQNVNKVETAVRI 244 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+P+GI V + E+SQ QN+ +AM +L+A+L + +++ A E S K I + Sbjct: 245 LHLPSGIAVRCTQERSQLQNKEKAMLLLKAKLLVIAKEQRAAEISDI-KGDIVEAAWGNQ 303 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR Y F + + D R L+ VL G +D I+ LL + Sbjct: 304 IRNYVFHPYQMVKDLRTMKETNDLDGVLNGGLDQFIHELLRMN 346 >gi|297171212|gb|ADI22220.1| protein chain release factor B [uncultured Gemmatimonadales bacterium HF0200_34B24] gi|297171327|gb|ADI22332.1| protein chain release factor B [uncultured actinobacterium HF0500_01C15] Length = 325 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 152/329 (46%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+E D + + + + + + E E Sbjct: 1 MAEPGFWDDQESARAVIDESNRLKGWVEPWKALAG--KGSELEALAELLEEEEDAELAGE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +++ + + + +D + I+ + G GG E+ + L RMY R+A Sbjct: 59 FEEELAVLQKSVEALELKTMLRGDEDHREAIVTLHPGAGGLESQDWAQMLMRMYTRWAER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R ++V VL + G K I G V+ +K E GVHR+ R+ +A R HTS Sbjct: 119 RGFQVNVLDLQPAQEAGIKSATLEIKGESVYGYLKAERGVHRLVRISPFDAQSRRHTSFT 178 Query: 203 TVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V P +I+V+I D+RIDT RASG+GGQHVN TDSAVRITH PT I+V E+ Sbjct: 179 SVFVYPLVEDDIEVEINEADLRIDTYRASGAGGQHVNKTDSAVRITHEPTNIVVSCQQER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQH+NR AMK+LRA LY + E++ K IG G +IR+Y F + Sbjct: 239 SQHKNRSTAMKMLRAALYQRALEEKEKEKAAIEESKADIGFG---SQIRSYVFQPYTMVN 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR + + V+ G +D +I L Sbjct: 296 DHRTETKIGDVHGVMDGDLDPLIEAYLKQ 324 >gi|157134367|ref|XP_001663262.1| mitochondrial peptide chain release factor [Aedes aegypti] gi|108870516|gb|EAT34741.1| mitochondrial peptide chain release factor [Aedes aegypti] Length = 422 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 11/351 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 K + ++ R L++S+ + A +S ++ L + Sbjct: 68 QKYLENI--RLEYYALKVSDQLDKKDI----KRMALLSHVVEMYEQRRIIMDNLNSLQEM 121 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + E + E L + D +D + ILE+ AG GG EA Sbjct: 122 SAEKDEDMLQLMREEKEAYTNILRKLDGEIMNGILSM-DDEEDYNTLILEVAAGVGGQEA 180 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF +LF MY + + W+ EV+ + D + GG + + GR + +KFE+GVHRV Sbjct: 181 MLFSRELFDMYCGFIDYKGWETEVIETEDTELGGIRHASIVVHGRDAYRYLKFEAGVHRV 240 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE S R+HTS ATV+V+P E ++++ +D++I+T RASG+GGQHVNTTDSAVR Sbjct: 241 QRVPTTEKSARIHTSTATVSVIPRPDEFEIELKDKDLKIETKRASGAGGQHVNTTDSAVR 300 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG+ V +E+SQ +N+ A + L A+L E + N + +K Q+GS R+E Sbjct: 301 IVHLPTGMAVECQTERSQVKNKEIAKQKLLAKLTQQELESKFNATQSMKKSQVGSSLRNE 360 Query: 305 RIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 +IRTYN++Q RITDHR+ T + L+ L+G ++D+I L H+ K + Sbjct: 361 KIRTYNYNQDRITDHRVDGGTTHNLKAFLEGGSQLEDMIAKLQAMHRKKQL 411 >gi|260102492|ref|ZP_05752729.1| peptide chain release factor RF2 [Lactobacillus helveticus DSM 20075] gi|260083697|gb|EEW67817.1| peptide chain release factor RF2 [Lactobacillus helveticus DSM 20075] Length = 332 Score = 195 bits (494), Expect = 1e-47, Method: Composition-based stats. Identities = 103/329 (31%), Positives = 164/329 (49%), Gaps = 10/329 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ++ D + + + + K + + +Q+ +D + +E Q E Sbjct: 1 MMQTGFWDDQEGAQKLISDNNLLKEKRDSFLKLQQDYED--ELTALELLRAEPDADLQQE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V K+++E + LL D + +LEI G GG+EA + LFRMY+RY Sbjct: 59 VETDLKDLQEAFHNYELDLLLSGKYDSHNALLEIHPGAGGTEAMDWGQMLFRMYQRYCDA 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K E+ ++ G K + ISG + +K E+GVHR+ + +A+ R HTS A Sbjct: 119 AGFKFEINDYEPGEEAGLKSVSVRISGNNAYGMLKSENGVHRLVIISPFDAAKRRHTSFA 178 Query: 203 TVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 +V V+PE + D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDDSIKIDIDPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTTSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ QNR AM LRA+L+ +E ++ ++ A + Q IG G +IR+Y F + Sbjct: 239 SQLQNRETAMNELRAKLFHLEEEKKRKQKQALKGDQKEIGWG---SQIRSYVFHPYNLVK 295 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R + V+ G + I L Sbjct: 296 DLRTGYETADVNGVMDGKLQPFIYSYLQW 324 >gi|302190497|ref|ZP_07266751.1| peptide chain release factor 2 [Lactobacillus iners AB-1] Length = 332 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 103/327 (31%), Positives = 164/327 (50%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + + A + + K+ Y D T + +N + E L +I Sbjct: 1 MADDTFWNDQTNAQKIIEATNYMREKVDKYQTLSSALADAKTAVELYNMEPENDMLMEIT 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + N LL DD + +LEI +G GG+EA + LFRMY+R+ Sbjct: 61 AEVEKLKNEF--NNYELHLLLSGKYDDHNALLEIHSGAGGTEAMDWANMLFRMYQRWCDS 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 EV D+ G K + + G F +K E+GVHR+ R+ +++ R HTS A Sbjct: 119 HNLTFEVDDFQVGDEAGLKSVSVRVQGNNAFGLLKSENGVHRLVRISPFDSAKRRHTSFA 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V+PE + +++I +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++ Sbjct: 179 SVEVIPEIDKSINIEINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QNR AM +LRA+L+ +E + + A + Q + +IR+Y F + DH Sbjct: 239 SQFQNRETAMDMLRAKLFKLEEDKKRKQTEALKGNQ-KEINFGSQIRSYVFHPYNMVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R + V+ G +D I L Sbjct: 298 RTDYETSDTIGVMNGNLDPFIYAYLQW 324 >gi|209964906|ref|YP_002297821.1| peptide chain release factor 2 PrfB [Rhodospirillum centenum SW] gi|209958372|gb|ACI99008.1| peptide chain release factor 2 PrfB [Rhodospirillum centenum SW] Length = 319 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 97/317 (30%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ ++ ++ +L + + D + E+ + Sbjct: 1 MREKTQLENALTGTRELERDLRDSLELIELAEAEGDAEMVADAEKTIAALKERAAKM--- 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D C LE+ +G GG+E+ + L RMY R+A +KV+ L + Sbjct: 58 --ELESLLSGEADANDCFLEVNSGAGGTESQDWALMLLRMYTRWAEQHGYKVDELDETPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID- 214 ++ G K I G + +K ESGVHR+ R+ ++ R HTS A+V+V P + Sbjct: 116 EEAGIKSATIQIKGHNGYGWLKTESGVHRLVRISPFDSQARRHTSFASVSVTPVIDDRIV 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V+I +D+++DT R+SG+GGQHVN TDSAVR+TH+PTGI+V E+SQH+NR +A +L Sbjct: 176 VEINEKDVKVDTYRSSGAGGQHVNKTDSAVRLTHLPTGIVVACQQERSQHKNRAKAWDML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RAR+Y++E ++ +A K +IG G +IR+Y + + D R + Sbjct: 236 RARIYEMELRKREEAAAALEATKTEIGWG---HQIRSYVLQPYQMVKDLRTGVETSDSGG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGDLDRFLQAALAQR 309 >gi|289663374|ref|ZP_06484955.1| peptide chain release factor 2 [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289668830|ref|ZP_06489905.1| peptide chain release factor 2 [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 276 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 100/253 (39%), Positives = 139/253 (54%), Gaps = 7/253 (2%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + D + ++I+AG GG+EA + L RMY R+A R WK E++ S + Sbjct: 16 EFQRMFSGQMDGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEV 75 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVD 216 G K I G + +K E GVHR+ R ++ R HTS +V V PE I++D Sbjct: 76 AGIKSATIRIEGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEID 135 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQNR AMK+L A Sbjct: 136 INPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAA 195 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LY++E ++ ER A K IG G +IR Y Q RI D R + + VL Sbjct: 196 KLYELEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIERSDTQKVLD 252 Query: 334 GYIDDIINPLLTA 346 G +D+ + L A Sbjct: 253 GDLDEFVEASLKA 265 >gi|326915756|ref|XP_003204179.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Meleagris gallopavo] Length = 393 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 137/315 (43%), Positives = 211/315 (66%), Gaps = 5/315 (1%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 + + ++I K++E +D + S+ ++R LA+ E+++ E+EI EL+++I LL+ Sbjct: 74 TELAARIQRLRDKERELRDTRELALQDESE-DLRKLAEREIVSCEEEIAELKHQIVLLLI 132 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 P + + ++E+ AG GG EA LF ++F MY RYAA +KWK E+L ++ GG + Sbjct: 133 P-SEETNSDLVMEVTAGVGGQEAMLFTSEIFDMYRRYAAYKKWKFEILEYFPSEIGGLRH 191 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 VA+I+G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ E+++ I +D+ Sbjct: 192 AVASIAGLDAYKYMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEMELKINPKDL 251 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVE 281 RI+T RASG+GGQHVNTTDSAVRI HIPTG+ E+SQ +N+ +AM++L A+LY+++ Sbjct: 252 RIETKRASGAGGQHVNTTDSAVRIVHIPTGVASECQQERSQIRNKEKAMQMLCAKLYNIK 311 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDI 339 + +R++ RK+QIG+ RSE+IRTYNF Q RITDHRI+ +++ +E + G +D++ Sbjct: 312 LEEETKKRNSVRKIQIGTKGRSEKIRTYNFPQDRITDHRISRSVHHIECFMLGEEMLDEM 371 Query: 340 INPLLTAHQAKMIGS 354 I L + + Sbjct: 372 IQTLKEYANYESLME 386 >gi|295099339|emb|CBK88428.1| bacterial peptide chain release factor 1 (bRF-1) [Eubacterium cylindroides T2-87] Length = 316 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 130/305 (42%), Positives = 184/305 (60%), Gaps = 6/305 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ L R+ EI M S V KL E ++PI+ + Y Q K+E ++ Sbjct: 4 MEDRLDSLVERYNEINELMMSSSVVSDRKQMAKLGREQNELTPIVETYAEYKQAKEEFEE 63 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 T+ D E+R+LA E+ +E I+E + + LL+PKD +D + +EIR G Sbjct: 64 AKTL--QKEDDKELRELANAEIERLEPAIKEYLDRLELLLVPKDPNDSHNAFMEIRGAAG 121 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA +F GDLFRMY +YA + WKVEV S D++ GG+ I ++G+ + +KFESG Sbjct: 122 GDEANIFAGDLFRMYAKYAESKGWKVEVTDSEDSEAGGFSLITFKVTGQNAYGTLKFESG 181 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HRVQRVP TE+ GR+ TS ATV PE E D DI + D+ I+ MRASG+GGQHVN TD Sbjct: 182 SHRVQRVPKTESQGRIQTSTATVLCYPELDEEDFDIDMNDLEIEAMRASGAGGQHVNKTD 241 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H PTGI+V +SQH+NR A+ + AR+ + ++ + + A R+ +IG+G Sbjct: 242 SAVRIVHKPTGIVVKCQDGRSQHENRATALATIAARVKEEHQRELDEKAGAERRTKIGTG 301 Query: 301 DRSER 305 DR+ER Sbjct: 302 DRAER 306 >gi|312879986|ref|ZP_07739786.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas paucivorans DSM 12260] gi|310783277|gb|EFQ23675.1| bacterial peptide chain release factor 2 (bRF-2) [Aminomonas paucivorans DSM 12260] Length = 374 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 94/349 (26%), Positives = 165/349 (47%), Gaps = 11/349 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + R + + ++ + + T E A + +++ QE + L + Sbjct: 25 DLPAAETRIEGLLKQAADPEFWTREDAQETTRELAQLQQKRESWETLNRELQEMETLAAL 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + + + +L + D I+ I AG GG ++ Sbjct: 85 LAEGEDVDLEEEF-----YRRAGAFEKELERRQIFVLLDEEYDRSDAIVTIHAGAGGLDS 139 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ +K +L + + G K I + G + +K E GVHR+ Sbjct: 140 QDWTEILSRMYLRWVEKEGFKSRILDQLADQEAGIKSITFEVLGDYAYGYLKGEKGVHRL 199 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ R HTS A+V VLP + D++I ED+++DT R+SG+GGQ+VN TDSAV Sbjct: 200 VRISPFDAAKRRHTSFASVEVLPVLPEDADIEIRPEDLKMDTFRSSGAGGQYVNMTDSAV 259 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPTGI+V E+SQH NR A++VL+++L++ + + + + + S Sbjct: 260 RITHIPTGIIVSCQVERSQHMNRATALQVLKSKLFERQLQERQEHLESL-QGEKRSIAWG 318 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + + DHR + + VL G ++++I L + Sbjct: 319 SQIRSYTLQPFQLVKDHRSGCEVGNVAAVLDGDLEELIMSTLRFFKTGR 367 >gi|254850994|ref|ZP_05240344.1| peptide chain release factor 2 [Vibrio cholerae MO10] gi|258620333|ref|ZP_05715371.1| peptide chain release factor 2 [Vibrio mimicus VM573] gi|258624704|ref|ZP_05719638.1| peptide chain release factor 2 [Vibrio mimicus VM603] gi|254846699|gb|EET25113.1| peptide chain release factor 2 [Vibrio cholerae MO10] gi|258582991|gb|EEW07806.1| peptide chain release factor 2 [Vibrio mimicus VM603] gi|258587212|gb|EEW11923.1| peptide chain release factor 2 [Vibrio mimicus VM573] Length = 248 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 145/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+++AG+GG+EA + L RMY R+A + +K EV+ S+ D G K Sbjct: 1 MFSGDHDSSDCYLDLQAGSGGTEAQDWTSMLLRMYLRWADAKGFKTEVIEVSEGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G + ++ E+GVHR+ R ++ GR HTS A+ + PE E D++I Sbjct: 61 SATVRIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEVDENIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|51891274|ref|YP_073965.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM 14863] gi|51854963|dbj|BAD39121.1| peptide chain release factor 2 [Symbiobacterium thermophilum IAM 14863] Length = 308 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 108/308 (35%), Positives = 158/308 (51%), Gaps = 7/308 (2%) Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + ++ DL +I S+ A+ A E + + +L D Sbjct: 2 EQLESFRRRLDDLEVMIDLAEEASDAEMAAEARAEADALEEQV--RQFELQVLLNGKYDA 59 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 + IL I AG GG+EA + L RMY R+A R +KVE L D D+ G K + + G Sbjct: 60 YNAILTIHAGAGGTEAQDWAEMLLRMYVRWAERRGFKVEELDRLDGDEAGIKSVTIAVRG 119 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTM 227 + ++ E GVHR+ R+ +ASGR HTS A V V+PE + D I ED+RIDT Sbjct: 120 PYAYGFLRPEMGVHRLVRISPFDASGRRHTSFAAVEVMPEIEDDVDDIEIRPEDLRIDTF 179 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG+GGQHVN T+SAVRITH+PTGI+V E+SQ QNR AM +LR++L +++ + Sbjct: 180 RSSGAGGQHVNKTESAVRITHLPTGIVVSCQQERSQMQNRAVAMMMLRSKLVELKIEEQN 239 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 E + R Q+ +IR+Y F + DHR + + + V+ G +D I L Sbjct: 240 KEMAQIRGPQME-IAWGSQIRSYVFQPYTLVKDHRSGVEVGNAQAVIDGELDPFIYGYLE 298 Query: 346 AHQAKMIG 353 + Sbjct: 299 KRANGELA 306 >gi|330919897|ref|XP_003298803.1| hypothetical protein PTT_09620 [Pyrenophora teres f. teres 0-1] gi|311327840|gb|EFQ93110.1| hypothetical protein PTT_09620 [Pyrenophora teres f. teres 0-1] Length = 416 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 117/367 (31%), Positives = 197/367 (53%), Gaps = 26/367 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + E+ +++ + ++ SPI+S + +D+ + +L ++I D Sbjct: 46 AITSEHKELTEKLANGFD----TRAAKKLGEYSPIVSALGEWDKANESVTELTSMIHDST 101 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+R LA ++ ++ + L+P C+LEIR G GGSEAA+F G Sbjct: 102 TDPELRSLASDDLEETRTQLVNASQSLITSLVPVHPFAHLPCLLEIRPGAGGSEAAIFAG 161 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGY--KEIVATISGRGVFSRMKFESGVHRV 185 DLFRMY + ++ ++ + + + G E + + + + E+GVHRV Sbjct: 162 DLFRMYSAFCNRNGFRTNLIKYENINGTSEAGVPLSEAIMEVENENAYGVFRCEAGVHRV 221 Query: 186 QRVPATEASGRVHTSAATVAVLP------------EAAEIDVDIPLEDIRIDTMRASGSG 233 QRVPATE GR HTSAA+V VLP + E D I ++++++ MRASG+G Sbjct: 222 QRVPATETKGRTHTSAASVHVLPSLQENSAEEQDFDNPESDYYIDPKEVKLEVMRASGAG 281 Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQHVN T+SAVR+THIPT +V +SQH+N+ +A +LRAR+ R++ E + Sbjct: 282 GQHVNKTESAVRLTHIPTNTVVAMQDSRSQHKNKEKAWALLRARIAQTRREKREEEMANM 341 Query: 293 RKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQ 348 R+ IG R +++RTYN+ Q R+TDHR +T++ L+ V+ G +D ++ + + Sbjct: 342 RRSVIGVAKMGRGDKVRTYNWGQQRVTDHRSGMTVHDLDDVMGGGQTLDKVMESVRSWLM 401 Query: 349 AKMIGSA 355 + + + Sbjct: 402 ERDVEAL 408 >gi|160891387|ref|ZP_02072390.1| hypothetical protein BACUNI_03837 [Bacteroides uniformis ATCC 8492] gi|270295480|ref|ZP_06201681.1| conserved hypothetical protein [Bacteroides sp. D20] gi|317478476|ref|ZP_07937636.1| peptide chain release factor 2 [Bacteroides sp. 4_1_36] gi|156858794|gb|EDO52225.1| hypothetical protein BACUNI_03837 [Bacteroides uniformis ATCC 8492] gi|270274727|gb|EFA20588.1| conserved hypothetical protein [Bacteroides sp. D20] gi|316905365|gb|EFV27159.1| peptide chain release factor 2 [Bacteroides sp. 4_1_36] Length = 371 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 156/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + D + + + Sbjct: 1 MITAEQLKDIKERTEALNRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y++ K ++ + + + + LE + Sbjct: 61 QWISGYNEVKTLTDEVQLAFDFYKDELVTEEEVDDAYAKAITAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETHGYKATIANLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+V+I + D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNIEPARMSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +NR A+++LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNRENALRLLRSM 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|313675052|ref|YP_004053048.1| bacterial peptide chain release factor 2 (brf-2) [Marivirga tractuosa DSM 4126] gi|312941750|gb|ADR20940.1| bacterial peptide chain release factor 2 (bRF-2) [Marivirga tractuosa DSM 4126] Length = 363 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 91/341 (26%), Positives = 157/341 (46%), Gaps = 12/341 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 E+EL ++ + + + I + +D+ + ++ T Sbjct: 23 NKKVEEIKELELVSAQPDFWNDSDEAEKTMKVIQGLKEWTKHFDELSELYGEVETYYEFL 82 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + ELE + +D S +L+I G GG+E+ + Sbjct: 83 EMGESSEEEVSKAYKKALTKTEELEL----KKMLSSEEDQLSAMLQITPGAGGTESNDWA 138 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 G L RMY + +KV + + D G K + G + +K E+GVHR+ R+ Sbjct: 139 GILMRMYIMWGEANGYKVREVDFQEGDVAGVKSVTLEFDGPQAYGFLKSENGVHRLVRIS 198 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ GR HTS A+V V P I++DI D+ + T R+ G+GGQ+VN ++ V++TH Sbjct: 199 PFDSGGRRHTSFASVYVYPVVDDSIEIDIHPNDVELHTSRSGGAGGQNVNKVETKVQLTH 258 Query: 249 IPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305 PTGI +V + ++Q NR AMK+L+++LY +E ++ + ER+ K +I D + Sbjct: 259 KPTGIVVVCQANRTQLGNREEAMKMLKSQLYQIEVEKRSAERNEVEAGKKKI---DFGSQ 315 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR Y + I D R + ++ VL G ++D I L Sbjct: 316 IRNYVLHPYKLIKDARTGVERTDVQNVLDGDLNDYIKAYLM 356 >gi|224048051|ref|XP_002187712.1| PREDICTED: mitochondrial translational release factor 1-like [Taeniopygia guttata] Length = 421 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 139/293 (47%), Positives = 199/293 (67%), Gaps = 4/293 (1%) Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 N + + R LA+ E+ + E+EI EL+ +I LL+P + D+ ++E+ AG GG EA LF Sbjct: 122 ANENEDFRKLAEREIASCEEEIAELKQQIVLLLIPSEETDESDLVMEVTAGVGGQEAMLF 181 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 ++F MY+RYAA +KWK EVL ++ GG + VA+I+G + MKFE GVHRVQRV Sbjct: 182 TSEIFDMYQRYAAYKKWKFEVLEYFPSELGGLRHAVASIAGLEAYKYMKFEGGVHRVQRV 241 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE GR+HTS TVA+LP+ E+ + I +D+RI+T RASG+GGQHVNTTDSAVRI H Sbjct: 242 PKTEKQGRIHTSTMTVAILPQPTEMRLQINPKDLRIETKRASGAGGQHVNTTDSAVRIVH 301 Query: 249 IPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPTGI+ E+SQ +N+ +AM++L A+LY+ + + +R+ RK+QIG+ RSE+IR Sbjct: 302 IPTGIVSECQQERSQIRNKEKAMQMLCAKLYNAKLEEETKKRNYARKIQIGTKGRSEKIR 361 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLT-AHQAKMIGSASE 357 TYNF Q RITDHRI+ +++ +E + G +D++I L A ++ SE Sbjct: 362 TYNFPQDRITDHRISRSVHHVESFMLGEEMLDEMIQTLREYADYESLMEIISE 414 >gi|49474202|ref|YP_032244.1| peptide chain release factor 2 [Bartonella quintana str. Toulouse] gi|49239706|emb|CAF26082.1| Peptide chain release factor 2 (rf-2 [Bartonella quintana str. Toulouse] Length = 322 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 163/318 (51%), Gaps = 13/318 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + IS I + + +E +L + + + I D + + + Sbjct: 1 MMRERQRLDDSISGIQSFTKTLEECIELIAMGEEESDVEIITDAENLIRNLKNEIDK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 +L D LE+ AG GG+E+ + L RMY R+A K KVE+L D Sbjct: 58 --RQIDMLLSREADPNDTYLEVHAGAGGTESQDWASMLLRMYMRWAEQHKMKVEILEIHD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 ++ G K + G + +K ESGVHR+ R+ +++ + HTS A++ V P I Sbjct: 116 GEEAGIKSATIFVKGHNAYGLLKTESGVHRLVRISPYDSNAKRHTSFASIWVYPVIDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +VD+ D+RIDT R+SG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR A + Sbjct: 176 EVDVSESDVRIDTYRSSGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQHKNRATAWSM 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E K+ + + + K +IG G +IR+Y + + D R + + Sbjct: 236 LRARLYEQELKKREEKTNAVESSKTEIGWG---HQIRSYVLQPYQLVKDLRTGVENTDPQ 292 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +D I L Sbjct: 293 SVLNGNLDAFIEAALAQR 310 >gi|290982185|ref|XP_002673811.1| predicted protein [Naegleria gruberi] gi|284087397|gb|EFC41067.1| predicted protein [Naegleria gruberi] Length = 324 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 148/308 (48%), Positives = 196/308 (63%), Gaps = 16/308 (5%) Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L + + S++EI E L + + ++ + P + I+EIR GT Sbjct: 9 ELKQLAKEEYSETEIEYSKTQERLISVLLNAPVSDTEDHQISPNS-----NAIIEIRPGT 63 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRG-------- 171 GG EA+LF +LF+MYE YA R WK EVLS S N+ G G KE +A ISG Sbjct: 64 GGDEASLFAMELFKMYEFYATKRGWKFEVLSLSANNGGEGCKEGIALISGSSYGDDEGLG 123 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 V+ MKFESGVHRVQRVPATE+ GRVHTS+A++ VLPE E DV I L D+RIDTMRASG Sbjct: 124 VYGCMKFESGVHRVQRVPATESQGRVHTSSASIVVLPEVTEADVKINLADVRIDTMRASG 183 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVNTTDSAVR+THIPTG +V + E+SQH+N+ +A K+L +RLY ++ + S Sbjct: 184 AGGQHVNTTDSAVRLTHIPTGTVVCIADERSQHRNKEKAFKILHSRLYQKQQDEKIQKMS 243 Query: 291 ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQA 349 + RK QIGSGDRS++IRTYNF Q RITDHRI+ + + L+ ++ G +D L + Sbjct: 244 SERKEQIGSGDRSDKIRTYNFPQDRITDHRISFSQFGLDKMMDGEILDSFFEILAKQEKI 303 Query: 350 KMIGSASE 357 + E Sbjct: 304 QQFERLFE 311 >gi|50954999|ref|YP_062287.1| peptide chain release factor 2 [Leifsonia xyli subsp. xyli str. CTCB07] gi|50951481|gb|AAT89182.1| peptide chain release factor 2 [Leifsonia xyli subsp. xyli str. CTCB07] Length = 372 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 98/352 (27%), Positives = 163/352 (46%), Gaps = 7/352 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ A++ R D + + +A+S S+++ +Q DL ++ Sbjct: 25 DVDKLRAAIADLSERAGAPDLWDDPVNAQKVTSALSHRQSELARITAIQQRLDDLEVLVE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 N + A+ + ++ L D+++ I+ IR+G GG +A Sbjct: 85 LANEGDDEESAAEARAELEALQKAL--GDLEVQTLLSGEYDERAAIVTIRSGAGGDDATD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+A K+ V V+ +S + G K + F + E+G HR+ R Sbjct: 143 FAEMLLRMYLRWAEQHKYPVTVMDTSYAEGAGIKSATFEVDMPYAFGTLSVEAGTHRLAR 202 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++ + TS A V V+P VD+P DIR+D R+SG GGQ VNTTDSAVR+ Sbjct: 203 ISPFGSADKRQTSFAAVEVIPLMEEANQVDVPEGDIRVDVFRSSGPGGQSVNTTDSAVRL 262 Query: 247 THIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V+ +EKSQ QNR AM+VL+ RL ++++ A ++ + ++ Sbjct: 263 THLPTGIVVSMQNEKSQIQNRAAAMRVLQTRLLLLQKEEEAAKKKELAGNI--TASWGDQ 320 Query: 306 IRTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +R+Y + Q + D R V G +D I + + Sbjct: 321 MRSYFLYGQQLVKDLRTGYESGNPATVFDGDLDGFIAAGIRWRAGSKAEAQG 372 >gi|290476399|ref|YP_003469304.1| peptide chain release factor RF-2 [Xenorhabdus bovienii SS-2004] gi|289175737|emb|CBJ82540.1| peptide chain release factor RF-2 [Xenorhabdus bovienii SS-2004] Length = 286 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 98/289 (33%), Positives = 160/289 (55%), Gaps = 12/289 (4%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + + + + + A +++ E ++ + + D +C L+++AG+G Sbjct: 4 LLELAVEADDEETFNEAV-----AELEQLEEKLGQLEFRRMFSGQYDSANCYLDLQAGSG 58 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+EA + L RM+ R+A + +K E++ SD D G K I G + ++ E+G Sbjct: 59 GTEAQDWASMLMRMFLRWAESKGFKTEIIEESDGDVAGLKSATIKIIGEYAYGWLRTETG 118 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 VHR+ R ++ GR HTS ++ + PE +ID++I D+RID RASG+GGQHVN T Sbjct: 119 VHRLVRKSPFDSGGRRHTSFSSAFIYPEVDDDIDIEINPADLRIDVYRASGAGGQHVNKT 178 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQI 297 +SAVRITHIPTG++ +++SQH+N+ +AMK L+A+LY++E ++ ++ K I Sbjct: 179 ESAVRITHIPTGLVTQCQNDRSQHKNKDQAMKQLKAKLYELEMQKKNADKQAMEENKSDI 238 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G G +IR+Y RI D R + + VL G +D I L A Sbjct: 239 GWG---SQIRSYVLDDSRIKDLRTGVETRNTQSVLDGDLDKFIEASLKA 284 >gi|226354826|ref|YP_002784566.1| peptide chain release factor 2 [Deinococcus deserti VCD115] gi|226316816|gb|ACO44812.1| putative Peptide chain release factor 2 (RF-2) [Deinococcus deserti VCD115] Length = 383 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 104/355 (29%), Positives = 173/355 (48%), Gaps = 16/355 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I R E++ +S+ + ++T+E + I+ S Q ++ Sbjct: 35 DIPGKTRRLNELDRELSDPELWNDQSRARQVTQESGTLRRIVESYSSLHSDAQGLNEMLE 94 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + + + + ++ E L D + I+ ++ G GG+E Sbjct: 95 IADEEEREMLVEEQSSLQTRVDELYRETL---------FTMKHADTAAIVRVKGGAGGTE 145 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + G L RMY R+A R +KV++L D GY+ I I G + M E GVHR Sbjct: 146 AQDWAGMLARMYMRWAERRGYKVDILDEQPGDQAGYQSIEFIIRGEKAYGMMAAEHGVHR 205 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED--IRIDTMRASGSGGQHVNTTDS 242 + RV +++ R TS A+V V+PE E +++I + D +R D R+ G+GGQ VNTTDS Sbjct: 206 LVRVSPFDSNNRRQTSFASVDVVPEVPEEEINIHIPDSDLRRDVFRSQGAGGQGVNTTDS 265 Query: 243 AVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTGI + +SQ +N A+++L+ RLYD+E K+ E +A R Q + Sbjct: 266 AVRLTHLPTGIAVACQITRSQIKNAELALQILKQRLYDIEVKKREAEEAAARGAQAK-VE 324 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 ++R+Y + I DHR L + + VL G +D+++ L K + Sbjct: 325 WGSQMRSYVLDKQYIKDHRTGLMKHNPDDVLDGDLDELMWAGLEWMAGKRVAEEG 379 >gi|308126586|ref|ZP_05911115.2| peptide chain release factor 2 [Vibrio parahaemolyticus AQ4037] gi|308107642|gb|EFO45182.1| peptide chain release factor 2 [Vibrio parahaemolyticus AQ4037] Length = 260 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 98/260 (37%), Positives = 151/260 (58%), Gaps = 7/260 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E ++ + + D+ C ++++AG+GG+EA + + RMY R+A + +K EV Sbjct: 1 MEEKLAQLEFRRMFSGDHDNSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFKAEV 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE Sbjct: 61 IEVSEGEVAGLKSATVRISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPE 120 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E +DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 121 IDENIAIDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVEN 237 Query: 326 YKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 238 RNTQAVLDGDLDKFIEASLK 257 >gi|288929843|ref|ZP_06423686.1| peptide chain release factor 2, programmed [Prevotella sp. oral taxon 317 str. F0108] gi|288328944|gb|EFC67532.1| peptide chain release factor 2, programmed [Prevotella sp. oral taxon 317 str. F0108] Length = 372 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 157/373 (42%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D++ R + + D + E+ + I Sbjct: 1 MITADQLKDIQERAEALHRYLDIDHKRVELEEEELRTQAPDFWDDPARAQEQMKKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y + +Q +L ++ D + + + LE + Sbjct: 61 KWIVGYKEVRQAADELQLAFDFYHDDMVTEEEVDEDYRKAITAVENLELMNM----LRQK 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+L+I +G GG+E+ + L RMY R+A +V + + + D+ G K + Sbjct: 117 EDPMDCVLKINSGAGGTESQDWAQMLMRMYMRWAESHGHRVTISNLQEGDEAGIKSVTME 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGEYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVSPLVDDTIEVYVDPSKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 D R+ G+GGQ+VN ++ VR+ + T ++ + + Q +NR AM++L++ Sbjct: 237 DLFRSGGAGGQNVNKVETGVRLRYQYTDPDTGEEEEILIENTESRKQLENRNNAMRLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTADVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|88658024|ref|YP_507510.1| peptide chain release factor 2, programmed frameshift [Ehrlichia chaffeensis str. Arkansas] gi|88599481|gb|ABD44950.1| peptide chain release factor 2, programmed frameshift [Ehrlichia chaffeensis str. Arkansas] Length = 366 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 101/346 (29%), Positives = 179/346 (51%), Gaps = 12/346 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 H I +L + A++ L+ S + D + I ++ + + ++E + Sbjct: 24 HLDIDNLTSLLADLSLQCSSTSLWDDNSLAQRILCERARISKTLNSFTELEEEYNYYTEL 83 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + N+D++ E+ A +++E + L + D C +EI++G GG+E+ Sbjct: 84 LSVINNDTDEL---LNELEAGLAKLKEKVQKKEVECLFSNEADHNDCFIEIQSGAGGTES 140 Query: 126 ALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + LFRMY R+A +K E++ D ++ G K + G + K ESG+HR Sbjct: 141 NDWSSMLFRMYVRWAEIYHNFKTEIVHKLDGEEVGVKSATIKVIGDNAYGWAKTESGIHR 200 Query: 185 VQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ ++ + HT+ +++ V P + +++I +D+RIDT RASG+GGQHVN T+SA Sbjct: 201 LVRISPFNSNAKRHTTFSSILVSPVINEDTNIEILDKDLRIDTYRASGAGGQHVNKTESA 260 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRITHIP+GI+V + +SQHQN A +L++RLY ++ + + + ++ IG G Sbjct: 261 VRITHIPSGIVVQCQNNRSQHQNLAEAHNLLKSRLYQLKLQEKEKKMAEEHNKRCNIGWG 320 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + +IR+Y + + D R + + VL G +D I LT Sbjct: 321 N---QIRSYVMHPYQMVKDIRTGHEVGNVNSVLDGNLDSFIISALT 363 >gi|46446965|ref|YP_008330.1| peptide chain release factor RF-2 [Candidatus Protochlamydia amoebophila UWE25] gi|46400606|emb|CAF24055.1| probable peptide chain release factor RF-2 [Candidatus Protochlamydia amoebophila UWE25] Length = 326 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 101/327 (30%), Positives = 167/327 (51%), Gaps = 6/327 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M ES + + + + Y + K + ++ ++ + +E + E Sbjct: 1 MGESSFWNNSEQAQLIINECRDLRAWTVPYQELKTKFENCKELLPEAYELNE--ESFIEE 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 +L I ++ ++ + D+K C L I +G GG+EA + L RMY+R+AA Sbjct: 59 LLRDLDSIEKVLGDLEVQRMLSGEMDNKDCYLTINSGAGGTEACDWAQMLSRMYQRWAAK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + WK+E++ D D G K I G + K E GVHR+ R+ +++ + HTS A Sbjct: 119 KGWKIEIIDFVDGDVVGLKSITLRFQGSYAYGYSKAEKGVHRLVRISPFDSNAKRHTSFA 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V PE +I V+I ED+R+DT R+SG+GGQHVN TDSAVR+TH+PTGI+V +++ Sbjct: 179 SVDVSPEITTDIQVEIKPEDVRVDTFRSSGAGGQHVNKTDSAVRLTHMPTGIVVSCQTQR 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ ++LR++LY++E + K + +IR Y F + D Sbjct: 239 SQVQNKEACYQMLRSKLYEMEVLEREKALNNL-KGEKKENAWGSQIRNYVFQPYTLVKDT 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTA 346 R ++ V+ G +D+ +N L Sbjct: 298 RTKAESGNIQAVMDGELDEFVNAYLKE 324 >gi|303247215|ref|ZP_07333489.1| peptide chain release factor 2 [Desulfovibrio fructosovorans JJ] gi|302491374|gb|EFL51262.1| peptide chain release factor 2 [Desulfovibrio fructosovorans JJ] Length = 307 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 115/308 (37%), Positives = 165/308 (53%), Gaps = 14/308 (4%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ I + + + ++ D S + LA+ E L Sbjct: 2 LTSRIEDGEKLLAARTDLDEWLSLAKDDGSPEVLDALAEQIATLDG------ELADAELA 55 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 ++D+ ILEI G GG+EA + L RMY R+A +++ V++L D+ G K Sbjct: 56 AFFRSEDNVDAILEIHPGAGGTEAQDWAEMLLRMYRRWAERKEFGVKILDYLPGDEAGLK 115 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLE 220 + SG + + E G+HR+ R+ ++SGR HTS A+V V P+A +ID+DI + Sbjct: 116 SVTLQFSGPYAYGMLAAEKGIHRLIRISPFDSSGRRHTSFASVDVYPDAGVDIDIDIKED 175 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG GGQHVN T SA+RITH+PTGI+V +EKSQH+NR AMKVL+ARLYD Sbjct: 176 DLRIDVFRASGPGGQHVNKTSSAIRITHLPTGIVVQCQNEKSQHRNRETAMKVLKARLYD 235 Query: 280 VERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYI 336 +E K++ E+ K IG G +IRTY R + DHR + +E VL G + Sbjct: 236 LELKKLQAEKQESYESKNAIGFG---SQIRTYTMQPYRLVKDHRTGVDAGDVEAVLDGDL 292 Query: 337 DDIINPLL 344 D I L Sbjct: 293 DKFIRGYL 300 >gi|319408605|emb|CBI82260.1| peptide chain release factor RF-2 [Bartonella schoenbuchensis R1] Length = 323 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 117/322 (36%), Positives = 163/322 (50%), Gaps = 13/322 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + I+ I ++ Q +E +L + + + + I D + + Sbjct: 1 MMRERQCLEDSINGIRLFTQTLEECIELIAMGEEESDEEIITDAENTIRKLKSEIDK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 LL D LEI AG GG+E+ + L RMY R+A K KVEVL D Sbjct: 58 --RQIDLLLSGEADSNDTYLEIHAGAGGTESQDWASMLLRMYIRWAEQHKMKVEVLEIHD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A+V V I Sbjct: 116 GEEAGIKSATILVKGHNAYGMLKTESGVHRLVRISPFDSNARRHTSFASVWVYSVVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI DIRIDT RASG+GGQHVNTTDSAVRITHI TGI+V E+SQH+NR A + Sbjct: 176 EIDISESDIRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQVERSQHKNRATAWSM 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E K+ E +A K +IG G +IR+Y + + D R + + Sbjct: 236 LRARLYEEELKKREAETNAIEASKTEIGWG---HQIRSYVLQPYQLVKDLRTGVENTDPQ 292 Query: 330 YVLQGYIDDIINPLLTAHQAKM 351 VL G +D I L K Sbjct: 293 TVLNGNLDAFIEAALAQRVYKQ 314 >gi|163846312|ref|YP_001634356.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl] gi|222524073|ref|YP_002568544.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl] gi|163667601|gb|ABY33967.1| peptide chain release factor 2 [Chloroflexus aurantiacus J-10-fl] gi|222447952|gb|ACM52218.1| peptide chain release factor 2 [Chloroflexus sp. Y-400-fl] Length = 313 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 104/318 (32%), Positives = 160/318 (50%), Gaps = 9/318 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + ++ + +++ +L + +S DLA + + Sbjct: 1 MQRLTRLKEEVTAWNDLERRIASAAELIELAELEGDESLTADLAAEVQAIQREVAQ---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L DD+ L ++AG GG++A + L RMY R+A R + V ++ S+ Sbjct: 57 -RELEILLSGPYDDRDAFLSVQAGMGGTDAQDWAAMLLRMYTRWAERRGYTVNLIDMSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-ID 214 ++ G K I G + + E+GVHR+ R+ A+ TS A V V+PE + + Sbjct: 116 EEAGIKSATIEIRGPYAYGYARAEAGVHRLIRLSPFNAAHTRQTSFARVEVMPEVDDAPE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V+I ED+RID R+ G GGQ VNTTDSAVRITH+PTGI+V +E+SQ QNR AM+VL Sbjct: 176 VEIKPEDLRIDVFRSGGHGGQGVNTTDSAVRITHLPTGIVVTCQNERSQIQNRELAMRVL 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 RARL + E +R A ER+ R + ++RTY + DHR + ++ VL Sbjct: 236 RARLLERELQRQAEERARLR-GEYREAAFGNQMRTYYLHPSTLVKDHRTDYETSNVQAVL 294 Query: 333 QGYIDDIINPLLTAHQAK 350 G ID I L A+ + Sbjct: 295 DGEIDPFIEAFLRANVRE 312 >gi|206895563|ref|YP_002247293.1| peptide chain release factor 2 [Coprothermobacter proteolyticus DSM 5265] gi|206738180|gb|ACI17258.1| peptide chain release factor 2 [Coprothermobacter proteolyticus DSM 5265] Length = 370 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 89/343 (25%), Positives = 156/343 (45%), Gaps = 11/343 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ D K +++ + K + + I ++ + ++ Sbjct: 25 KLDDKKAELSDVRKVYEKPDIWSDPDKAVAVARKVQRLEEEIERVEQIENLLKDLDAALE 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ + + ++ + L + D IL + AG GG + Sbjct: 85 LLQEGYDEELFEHALATLKELQQRI-----ELFRLVTLFTEPYDTNDAILMLHAGAGGVD 139 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+A ++ E++ S ++ G K + G + ++ E GVHR Sbjct: 140 AMDWTQMLMRMYLRWAERMGFETEIVDISRGEEAGVKSCTVFVRGSYAYGYLRAEKGVHR 199 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 + R+ +A R HTS A V V+P+ +++V+I +DI ++T R+ G+GGQH N T+S V Sbjct: 200 LVRLSPFDADHRRHTSFALVDVVPDVEDVEVEINPDDIEVETFRSGGAGGQHQNKTESGV 259 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+ H PTGI VT + E+SQ QNR RAM++LRAR++ + R + S Sbjct: 260 RLIHKPTGITVTVTEERSQLQNRERAMRILRARVHQYHEEERKKSLEEIR-GDVKSASWG 318 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR + ++ V+ G I D + L Sbjct: 319 NQIRSYVFHPYNMVKDHRTGYSRGDIDNVMDGDITDFMVKFLQ 361 >gi|28897286|ref|NP_796891.1| peptide chain release factor 2 [Vibrio parahaemolyticus RIMD 2210633] gi|153839363|ref|ZP_01992030.1| peptide chain release factor 2 [Vibrio parahaemolyticus AQ3810] gi|308094351|ref|ZP_05888606.2| peptide chain release factor 2 [Vibrio parahaemolyticus AN-5034] gi|308095310|ref|ZP_05904925.2| peptide chain release factor 2 [Vibrio parahaemolyticus Peru-466] gi|308125643|ref|ZP_05776404.2| peptide chain release factor 2 [Vibrio parahaemolyticus K5030] gi|28805495|dbj|BAC58775.1| peptide chain release factor 2 [Vibrio parahaemolyticus RIMD 2210633] gi|149747111|gb|EDM58099.1| peptide chain release factor 2 [Vibrio parahaemolyticus AQ3810] gi|308088411|gb|EFO38106.1| peptide chain release factor 2 [Vibrio parahaemolyticus Peru-466] gi|308093009|gb|EFO42704.1| peptide chain release factor 2 [Vibrio parahaemolyticus AN-5034] gi|308113324|gb|EFO50864.1| peptide chain release factor 2 [Vibrio parahaemolyticus K5030] Length = 260 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 98/260 (37%), Positives = 150/260 (57%), Gaps = 7/260 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E ++ + + D C ++++AG+GG+EA + + RMY R+A + +K EV Sbjct: 1 MEEKLAQLEFRRMFSGDHDSSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFKAEV 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE Sbjct: 61 IEVSEGEVAGLKSATVRISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPE 120 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E +DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 121 IDENIAIDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVEN 237 Query: 326 YKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 238 RNTQAVLDGDLDKFIEASLK 257 >gi|302759769|ref|XP_002963307.1| hypothetical protein SELMODRAFT_405091 [Selaginella moellendorffii] gi|300168575|gb|EFJ35178.1| hypothetical protein SELMODRAFT_405091 [Selaginella moellendorffii] Length = 622 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 138/336 (41%), Positives = 205/336 (61%), Gaps = 12/336 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + K++ +++R A + + E + IK+ +E + + I K++E Sbjct: 43 ILRILEKRMSSIEDRHACLSKALLEPGIASEKLIKMNKELRNLDYSVDMIKALRAKEKEV 102 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L ++ + D E+R LA E+ +E+R+ ++++ L+PKD D + ILE Sbjct: 103 IGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEADSRGYILE---- 158 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 E + R+ + V V D + +E A ISG GV+ +KFE Sbjct: 159 ----ELEVTKRQFLRLISSRC-RHVFLVHVECLLDFYEC-SQEASAVISGDGVYGALKFE 212 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVHRVQRVP TE +GR+HTS A+VA+LPEA E+DV+I ++I+IDT RA G+GGQHVNT Sbjct: 213 SGVHRVQRVPVTEKAGRIHTSTASVAILPEANEVDVEIRNDEIKIDTYRAGGAGGQHVNT 272 Query: 240 TDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T SAVR+TH PTGI+V E+SQH+N+ +A+ +L ARLY++ER R RS R+ QIG Sbjct: 273 TCSAVRVTHAPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAVASRSELRQDQIG 332 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 S DRSERIRTYNF QGR+TDHR+ +T + +E +++G Sbjct: 333 SSDRSERIRTYNFPQGRVTDHRVGVTQHAIEQIMEG 368 >gi|254229664|ref|ZP_04923074.1| Protein chain release factor B [Vibrio sp. Ex25] gi|151937785|gb|EDN56633.1| Protein chain release factor B [Vibrio sp. Ex25] Length = 248 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K EV+ S+ + G K Sbjct: 1 MFSGDHDSSDCYIDLQAGSGGTEAQDWTNMLLRMYLRWAEAKGFKAEVIEVSEGEVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE E D+DI Sbjct: 61 SATVRISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPEIDENIDIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFE 180 Query: 280 VERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ AN K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|94264473|ref|ZP_01288261.1| Peptide chain release factor 2 [delta proteobacterium MLMS-1] gi|93455104|gb|EAT05328.1| Peptide chain release factor 2 [delta proteobacterium MLMS-1] Length = 303 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 105/310 (33%), Positives = 160/310 (51%), Gaps = 13/310 (4%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++ + +E + L + D E + +E + ELE E Sbjct: 2 QNLVDAFRAVEAAGEEAEILLELAI-AEEDRETEQEVAGHLKNLESRLAELELECM---- 56 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D + IL I AG GG+EA +V L RMY R+A + + + L D+ G K Sbjct: 57 FSGEHDANNAILTIHAGAGGTEAQDWVEILLRMYLRWAENKGFTTDTLDLLPGDEAGIKG 116 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLED 221 + + GR + ++ E G+HR+ R+ + GR HTS A+V + PE +I V++ +D Sbjct: 117 VTVMVKGRWAYGYLRSEMGIHRLVRISPFDTGGRRHTSFASVFIFPELTDDIAVEVNDKD 176 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RIDT RASG+GGQHVN T SA+RITH+PTGI+ +E+SQH+N+ AMK+L+A+LY+ Sbjct: 177 LRIDTFRASGAGGQHVNKTSSAIRITHLPTGIVAQCQNERSQHRNKDTAMKMLKAQLYER 236 Query: 281 E--RKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYID 337 + ++R E K +I G +IR+Y R + DHR + ++ VL G ID Sbjct: 237 QQAQRREDQEHLHGDKKEIAWG---SQIRSYVLQPYRLVKDHRTDHETGNVDSVLDGNID 293 Query: 338 DIINPLLTAH 347 I L Sbjct: 294 PFIKSYLLWR 303 >gi|162147177|ref|YP_001601638.1| peptide chain release factor 2 [Gluconacetobacter diazotrophicus PAl 5] gi|161785754|emb|CAP55325.1| Peptide chain release factor 2 [Gluconacetobacter diazotrophicus PAl 5] Length = 322 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 165/310 (53%), Gaps = 13/310 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E ++ + + + ++ DL + D+ ++D + + + E Sbjct: 1 MRERTLLAGQVEGVQRLEADVRDTLDLVELAEMEGDDAVLKDAV-----QMLRALAEEAK 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D C LE+ AG GG+EA + L RMY R+A +KV ++ SS+ Sbjct: 56 RRETESLLSGEADSNDCYLEVNAGAGGTEAQDWAEMLLRMYTRWAEQHGYKVALMESSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 + G K ++G + +K E+GVHR+ R+ +A+ R TS A+V V P I+ Sbjct: 116 EQAGLKSATIQVTGPNAYGWLKTEAGVHRLVRISPFDAAARRQTSFASVWVYPVVDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D+++DT RASG+GGQHVN T+SA+RITHIPTGI+V +++SQH+NR AM +L Sbjct: 176 IEINEADLKVDTFRASGAGGQHVNKTESAIRITHIPTGIIVACQTDRSQHRNRATAMTML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +AR+Y+ E +R A ++ K IG G +IR+Y + + + D R ++ + Sbjct: 236 KARMYEQELQRREAAAAQTEAAKTDIGWG---HQIRSYVLAPYQLVKDLRTSVERGNPDA 292 Query: 331 VLQGYIDDII 340 VL G +DD + Sbjct: 293 VLDGDLDDFM 302 >gi|162449904|ref|YP_001612271.1| peptide chain release factor 2 [Sorangium cellulosum 'So ce 56'] gi|161160486|emb|CAN91791.1| peptide chain release factor 2 [Sorangium cellulosum 'So ce 56'] Length = 350 Score = 194 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 96/334 (28%), Positives = 162/334 (48%), Gaps = 6/334 (1%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 ++ S + K + + SK+ + + +E +DL + +E Sbjct: 2 LQDLTQTTLSSGFWNDQEKAQAVLRKRAQVESKLEVAQRLGREIEDLAEYLEL--GAAEG 59 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + + A I ++ + D + I+ I G GG++A + L RM Sbjct: 60 DEGVIADADAQADAIAGRLRKVELDRMLSGPADRGNAIVSIHPGAGGTDAKDWASMLLRM 119 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y R+ R +K E++ D D+ G + T+SG + ++ E+GVHR+ R+ A Sbjct: 120 YLRFCERRGYKTEIIDYQDGDEAGIDAVTLTVSGDAAYGYLRSEAGVHRLVRMSPFNADH 179 Query: 196 RVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-I 253 T+ A V V P++ + ++ + +DI I TMRA G GGQ+VN ++AVR+ HIPTG Sbjct: 180 TRQTAFAAVEVTPDSDDEINIQVNEKDIEITTMRAGGKGGQNVNKVETAVRLRHIPTGLN 239 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 +V +E+SQHQNR AMKVL+A+LY++E ++ E A + S + +IR Y + Sbjct: 240 IVCRAERSQHQNRAMAMKVLKAKLYEMELQKREAEVQAYNAAK-SSINFGSQIRNYVLAP 298 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R + D R + ++ VL G ++ I L A Sbjct: 299 YRLVKDVRTSTEATDVDAVLDGDLEGFIEAYLLA 332 >gi|282859886|ref|ZP_06268974.1| peptide chain release factor 2-like protein [Prevotella bivia JCVIHMP010] gi|282587289|gb|EFB92506.1| peptide chain release factor 2-like protein [Prevotella bivia JCVIHMP010] Length = 374 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 90/373 (24%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ +R F E +LR + + E+ + I Sbjct: 1 MITADQLKDILSRTDALYHYLGIEQKRIEFEEEQLRTQAPDFWEDPDRAREQMKKVKEIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + YD+ + + ++L + + + + I +LE + + Sbjct: 61 RWVKGYDKARAQAEELQLAFDFYKDELVTEEEVDAIYNKVVATIEDLEL----KNMLRQQ 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWADMLMRMYMRWGEAHGYKVTISDIQVGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 G F +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FEGGEYAFGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEQEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRMEAQAKVEAAKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDSVMN 353 Query: 334 GYIDDIINPLLTA 346 G +D I L Sbjct: 354 GKLDGFIKAYLME 366 >gi|72024372|ref|XP_797931.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115937037|ref|XP_001184225.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 422 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 133/364 (36%), Positives = 205/364 (56%), Gaps = 15/364 (4%) Query: 4 LSHKQICDLKNRFAEIEL---RMSESPSVDAYIKLTEEYA----AISPIISKISIYDQKK 56 +S + +L+ E+ + + +E + ++ K + Sbjct: 47 MSDSKQKELRESLMELGAVQWLLLRGDPMSDSK--QKELRGSLMELGAVLDKWEELTSAE 104 Query: 57 QEEQDLHTVIGDHNS---DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 +E +L +I + + D E+++LA E ++ I ++ E+ LLLP + DD I Sbjct: 105 EEITELQRLIEEPSDTSQDKEMQELAAAEKDDLDAMIADISEELVDLLLPSEETDDNDVI 164 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 +E AG GG EA LF D+F MY+RYAA R W VL D GG + ++SG + Sbjct: 165 MEFTAGVGGQEAMLFAADMFEMYQRYAAYRGWTFSVLEYFTTDMGGLRHASVSMSGDQAY 224 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 ++ E+GVHRVQRVP TE+ GR+HTS +AVLP+ EID+ + +D+R++T +ASG+G Sbjct: 225 LLLRQEAGVHRVQRVPRTESKGRIHTSTMAIAVLPQPKEIDLKLDPKDLRVETKKASGAG 284 Query: 234 GQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQHVNTTDSAVRITH+PTGI + E+SQH+NR AM +L+ R+Y+ + + Sbjct: 285 GQHVNTTDSAVRITHLPTGISAESQQERSQHKNRSIAMTMLQTRIYNRILADQTSSERSM 344 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAK 350 R Q+G+G RSE+IRTYN+ Q RITDHR T++ + L G +D+++ + Q + Sbjct: 345 RSSQVGTGGRSEKIRTYNYQQDRITDHRRGRTVHGVPEYLLGSELLDEMVTSCVEGDQCQ 404 Query: 351 MIGS 354 + Sbjct: 405 QVRE 408 >gi|254500720|ref|ZP_05112871.1| peptide chain release factor 2 [Labrenzia alexandrii DFL-11] gi|222436791|gb|EEE43470.1| peptide chain release factor 2 [Labrenzia alexandrii DFL-11] Length = 322 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 110/317 (34%), Positives = 165/317 (52%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + +Q+ + +L + G+ D + + A+ + ++ ++ +L Sbjct: 1 MRERQQLDDGINGVKGLEQELADNIELIEL-GEMEDDKSVVEDAEEALRGLKDKVNQL-- 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LEI +G GG+E+ + L RMY R+A R +KVE+L D Sbjct: 58 --QLDSLLSGEADGNDTYLEINSGAGGTESQDWASMLLRMYRRWAEKRGYKVELLEYHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS ++ V P I+ Sbjct: 116 EEAGIKSATLLIKGENAYGWLKTESGVHRLVRISPYDSNARRHTSFSSAWVYPVIDDSIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +D+ D RIDT RASG+GGQHVNTTDSAVRITH PTGI+V SE+SQH+NR A +L Sbjct: 176 IDVNESDCRIDTYRASGAGGQHVNTTDSAVRITHQPTGIVVQCQSERSQHKNRATAWGML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 +ARLY+ E K+ A A K IG G +IR+Y + + D R + + Sbjct: 236 KARLYEAELKKREEAANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVQSTSPDD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGSLDSFMEAALAQR 309 >gi|315607246|ref|ZP_07882247.1| peptide chain release factor RF2 [Prevotella buccae ATCC 33574] gi|315251063|gb|EFU31051.1| peptide chain release factor RF2 [Prevotella buccae ATCC 33574] Length = 373 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 156/352 (44%), Gaps = 20/352 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I K F E +LR + + E+ + I + Y + +Q +L Sbjct: 22 DIDKKKVEFEEEQLRTQAPDFWEDPARAQEQMKKVKSIEKWLDGYKEVRQYADELQLAFD 81 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + + K I LE + + +D +++I +G GG+E+ Sbjct: 82 FFHDDMVSEEEVDADYAKAIKAIEALEL----KNMLRQKEDPMEAVIKINSGAGGTESQD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQ 186 + L RMY R+ ++ V + + D+ G K + + G + +K E+GVHR+ Sbjct: 138 WASMLMRMYMRWCEAHGYRCTVSNLQEGDEAGIKSVTMEVEGGEYAYGYLKSENGVHRLV 197 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 RV A G+ TS A+V V P I+V + + DT R+ G+GGQ+VN +S VR Sbjct: 198 RVSPFNAQGKRMTSFASVFVSPLVDDTIEVFVDPARLSWDTFRSGGAGGQNVNKVESGVR 257 Query: 246 ITH---------IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--K 294 + + ++ + + Q +NR +AM +L+++LYD K+ ++ K Sbjct: 258 LRYWYQDPDTGEEEEILIENTETRDQPKNRAKAMLLLKSQLYDRAMKKRLEAQAKIEAGK 317 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G ID+ I L Sbjct: 318 KKIEWG---SQIRSYVFDDRRVKDHRTNYQTADVDGVMDGKIDEFIKAYLME 366 >gi|283778052|ref|YP_003368807.1| peptide chain release factor 2 [Pirellula staleyi DSM 6068] gi|283436505|gb|ADB14947.1| bacterial peptide chain release factor 2 (bRF- 2) [Pirellula staleyi DSM 6068] Length = 398 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 110/343 (32%), Positives = 165/343 (48%), Gaps = 12/343 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K +F +E RMS+ + K E + + + + ++ D DL ++ Sbjct: 48 DGKKKQFEFLEARMSQPDFWNVQEKALEVVSQVKSLKAILAPLDAIVNSASDLPGMLDMA 107 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D + E+ IEK++ +LE L D+ I+ I A GG++A+ + Sbjct: 108 GDDESFAADLRAEIERIEKQLDDLEL----KALLNGPLDNVGAIVTIHARDGGTDASDWA 163 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L RMY +A ++ +V + D G I G + +K ESG HR+ R+ Sbjct: 164 EMLLRMYIGWAQKNGYEYKVTERDEADVAGISAATLVIRGPMAYGYLKGESGHHRLVRIS 223 Query: 190 ATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + G+ TS A V VLPE + +V I EDIR DT RA G+GGQHVN T+SAVR+TH Sbjct: 224 PFNSEGKRQTSFAAVDVLPEIADDFEVVINKEDIREDTYRAGGAGGQHVNKTESAVRLTH 283 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSER 305 P+GI+V +E+SQH NR A K+LRARL E +R E ++ K ++G G + Sbjct: 284 FPSGIVVQCQNERSQHSNRATAYKMLRARLARAEEERREAESASKYKSAAKVGFG---SQ 340 Query: 306 IRTYNFSQ-GRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR Y R+ D R + VL G + I+ +L Sbjct: 341 IRNYFLHPTQRVKDSRTGYSEGDFHSVLDGNLQGFIDSVLKWR 383 >gi|209885116|ref|YP_002288973.1| peptide chain release factor 2 [Oligotropha carboxidovorans OM5] gi|209873312|gb|ACI93108.1| peptide chain release factor 2 [Oligotropha carboxidovorans OM5] Length = 322 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 101/316 (31%), Positives = 169/316 (53%), Gaps = 13/316 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + I +++ +++ L + G+ +D+ + A+ + A++K++ E Sbjct: 1 MQERTSLENQLGGIGRTERELEDQIGLIEL-GEAENDAAVVAEAEAALAALKKDVARQEL 59 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A + +KVE L + Sbjct: 60 ----EALLSGEADRFDTYLEVHAGAGGTESQDWASMLLRMYTRWAERKGFKVEFLEETQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS +++A+ P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPYDSNARRHTSFSSIAIFPVVDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDINESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQ 308 >gi|282158488|gb|ADA77879.1| peptide chain release factor 2 [Francisella tularensis subsp. tularensis NE061598] Length = 248 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 147/248 (59%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I++G+GG+EA + L RMY R+A +KV V SD D G K Sbjct: 1 MFSGKMDANNAFLDIQSGSGGTEAQDWAEMLMRMYMRWADSHGFKVTVDDVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G + ++ E+G+HR+ R +++ + HTS A+V + PE +ID++I Sbjct: 61 GCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRHTSFASVFISPEVDDDIDIEINPT 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + S++SQH+NR AMK L+++LY+ Sbjct: 121 DLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQSQSDRSQHKNRDNAMKQLKSKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E++ + K IG G +IR+Y Q RI D R + + VL G +D Sbjct: 181 MELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQSRIKDLRTGVENTNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|154506039|ref|ZP_02042777.1| hypothetical protein RUMGNA_03581 [Ruminococcus gnavus ATCC 29149] gi|153793538|gb|EDN75958.1| hypothetical protein RUMGNA_03581 [Ruminococcus gnavus ATCC 29149] Length = 314 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 6/308 (1%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + + + +Q + +DL +I + + + +IE + E E I L Sbjct: 4 LKSLQDSVKQIEQMYADYEDLGLLIEMSQEEQDEETVQEIEEELLRFEGEFEELRIQTL- 62 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 D I+ + AG GG+E+ + L+RMY R+A + + VEVL + D G K Sbjct: 63 -LTGEYDRDHAIVTLHAGAGGTESCDWANMLYRMYTRWAEKKGFSVEVLDYLEGDVAGIK 121 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLE 220 + + G + ++ E GVHR+ R+ A+G+ TS A+ V +ID++I + Sbjct: 122 GVTFEVRGENAYGYLRSEKGVHRLVRISPFNAAGKRQTSFASCDVIPDIEEDIDIEINDD 181 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 DIRIDT R+SG+GGQH+N T SA+RITH PTGI+V +E+SQH N+ +AM++L+A+LY Sbjct: 182 DIRIDTYRSSGAGGQHINKTSSAIRITHFPTGIVVQCQNERSQHMNKDKAMQMLKAKLYL 241 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDD 338 ++++ A++ S R +I +IR+Y + DHR N+ + + VL G +D Sbjct: 242 MKQQEQADKVSGIR-GEIKEIGFGSQIRSYVMQPYTLVKDHRTNMEISNVNGVLDGNLDP 300 Query: 339 IINPLLTA 346 IN L+A Sbjct: 301 FINAYLSA 308 >gi|261250316|ref|ZP_05942892.1| peptide chain release factor 2 [Vibrio orientalis CIP 102891] gi|260939432|gb|EEX95418.1| peptide chain release factor 2 [Vibrio orientalis CIP 102891] Length = 263 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 96/252 (38%), Positives = 147/252 (58%), Gaps = 7/252 (2%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + D C +++++G+GG+EA + + RMY R+A + +K EV+ S+ + Sbjct: 12 EFRRMFSGDHDSSDCYIDLQSGSGGTEAQDWTSMMLRMYLRWAEAKGFKTEVIEVSEGEV 71 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVD 216 G K ISG + ++ E+GVHR+ R ++SGR HTS A+ + PE + +D Sbjct: 72 AGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFIYPEIDDNIQID 131 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ +AMK LRA Sbjct: 132 INPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKDQAMKQLRA 191 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +L+++E ++ E+ AN K IG G +IR+Y RI D R + + VL Sbjct: 192 KLFELEIQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLD 248 Query: 334 GYIDDIINPLLT 345 G +D I L Sbjct: 249 GDLDKFIEASLK 260 >gi|301384023|ref|ZP_07232441.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. tomato Max13] gi|302058729|ref|ZP_07250270.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. tomato K40] gi|331016328|gb|EGH96384.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 304 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 103/309 (33%), Positives = 158/309 (51%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ I+ + + +DL + + + + D+A + + + Sbjct: 2 LAQIVETLDEMSSGLVDAKDLLLMSAEEEDQAAVDDVAAEVERLRASLEK-----LEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S + G K Sbjct: 57 MFSGEMDPNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ + + K IG G +IR+Y RI D R N+ + VL G ID Sbjct: 237 QEVQKRNAASQALEDTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDID 293 Query: 338 DIINPLLTA 346 + + L Sbjct: 294 EYLIASLKQ 302 >gi|327329965|gb|EGE71719.1| peptide chain release factor 2 [Propionibacterium acnes HL097PA1] Length = 370 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 162/326 (49%), Gaps = 11/326 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 N-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E A E + + +EI LE L D++ ++ IR+ GG +AA F Sbjct: 90 AADDKESLAEATTETVKLREEIDALEV----RTLLSGQYDEREAVVTIRSEAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 146 AEMLLRMYLRWSERHGYKVEILDTSYAEEAGIKAATFVVHAPFAYGTLSVEQGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+T Sbjct: 206 SPFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLT 265 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++ Sbjct: 266 HLPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QM 322 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYV 331 R+Y + + D R N + + V Sbjct: 323 RSYVLHPYQMVKDLRTNHEVGNTDAV 348 >gi|157133587|ref|XP_001656262.1| mitochondrial peptide chain release factor [Aedes aegypti] gi|108870765|gb|EAT34990.1| mitochondrial peptide chain release factor [Aedes aegypti] Length = 422 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 124/351 (35%), Positives = 192/351 (54%), Gaps = 11/351 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 K + ++ R L++S+ + A +S ++ L + Sbjct: 68 QKYLENI--RLEYYALKVSDQLDKKDI----KRMALLSHVVEMYEQRRIIMDNLNSLQEM 121 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + E + E L + D +D + ILE+ AG GG EA Sbjct: 122 STEKDEDMLQLMREEKEAYTNILRKLDGEIMNGILSM-DDEEDYNTLILEVAAGVGGQEA 180 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF +LF MY + + W+ EV+ + D + GG + + GR + +KFE+GVHRV Sbjct: 181 MLFSRELFDMYCGFIDYKGWETEVIETEDTELGGIRHASIVVHGRDAYRYLKFEAGVHRV 240 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE S R+HTS ATV+V+P E ++++ +D++I+T RASG+GGQHVNTTDSAVR Sbjct: 241 QRVPTTEKSARIHTSTATVSVIPRPDEFEIELKDKDLKIETKRASGAGGQHVNTTDSAVR 300 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG+ V +E+SQ +N+ A + L A+L E + N + +K Q+GS R+E Sbjct: 301 IVHLPTGMAVECQTERSQVKNKEIAKQKLLAKLTQQELESKFNATQSMKKSQVGSSLRNE 360 Query: 305 RIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 +IRTYN++Q RITDHR+ T + L+ L+G ++D+I L H+ K + Sbjct: 361 KIRTYNYNQDRITDHRVDGGTTHNLKAFLEGGPQLEDMIAKLQAMHRKKQL 411 >gi|313816439|gb|EFS54153.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA1] gi|313827262|gb|EFS64976.1| peptide chain release factor 2 [Propionibacterium acnes HL063PA2] gi|314917824|gb|EFS81655.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA1] gi|314919714|gb|EFS83545.1| peptide chain release factor 2 [Propionibacterium acnes HL050PA3] gi|314930043|gb|EFS93874.1| peptide chain release factor 2 [Propionibacterium acnes HL067PA1] gi|314956378|gb|EFT00690.1| peptide chain release factor 2 [Propionibacterium acnes HL027PA1] gi|314957250|gb|EFT01353.1| peptide chain release factor 2 [Propionibacterium acnes HL002PA1] gi|314967699|gb|EFT11798.1| peptide chain release factor 2 [Propionibacterium acnes HL037PA1] gi|315098170|gb|EFT70146.1| peptide chain release factor 2 [Propionibacterium acnes HL059PA2] gi|315101677|gb|EFT73653.1| peptide chain release factor 2 [Propionibacterium acnes HL046PA1] gi|315109496|gb|EFT81472.1| peptide chain release factor 2 [Propionibacterium acnes HL030PA2] gi|327452380|gb|EGE99034.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA3] gi|327452743|gb|EGE99397.1| peptide chain release factor 2 [Propionibacterium acnes HL083PA2] gi|328753837|gb|EGF67453.1| peptide chain release factor 2 [Propionibacterium acnes HL087PA1] Length = 370 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 162/326 (49%), Gaps = 11/326 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQVAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 N-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E A E + + +EI LE L D++ ++ IR+ GG +AA F Sbjct: 90 AADDKESLAEATTETVKLREEIDALEV----RTLLSGQYDEREAVVTIRSEAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 146 AEMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+T Sbjct: 206 SPFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLT 265 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++ Sbjct: 266 HLPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QM 322 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYV 331 R+Y + + D R N + + V Sbjct: 323 RSYVLHPYQMVKDLRTNHEVGNTDAV 348 >gi|219682342|ref|YP_002468726.1| peptide chain release factor 2 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219622075|gb|ACL30231.1| peptide chain release factor 2 [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 99/342 (28%), Positives = 178/342 (52%), Gaps = 15/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R EI+L +S + KL +E ++ II I+ ++ +E + Sbjct: 12 NKKKSRVLEIDLELSSPKTWTEQISIKKLNKEKYLLNSIIQNINEIEENIKEVVIFLELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ ++I + ++ + + DD C ++I++G+GG++A Sbjct: 72 IETQDNLVFKESL-----LEIQKIEQEIKKLEFYRMFSKKDDHYDCYIDIQSGSGGTDAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + + E++ S + G K +SG F + E+G+HR+ Sbjct: 127 DWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIKSSTIKVSGEYAFGWFRTETGIHRLI 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +++ + P+ E D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 187 RKSPFDSGKRRHTSFSSIFIYPDINEKIDININYSDLRIDVYRASGAGGQHVNRTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ + +SQH+N+ +AMK ++++LY+++ ++ E+ K I G+ Sbjct: 247 ITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYEIQMRKKQEEKQKIEQNKSDITWGN- 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y +I D R + ++ VL G +DD I L Sbjct: 306 --QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLDDFIEQSL 345 >gi|311087834|gb|ADP67913.1| peptide chain release factor 2 [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 178/342 (52%), Gaps = 15/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R EI+L +S + KL +E ++ II I+ ++ +E + Sbjct: 12 NKKKSRVLEIDLELSSPKTWTEQISIKKLNKEKYLLNSIIQNINEIEENIKEVVIFLELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ ++I + ++ + + +D C ++I++G+GG++A Sbjct: 72 IETQDNLVFKESL-----LEIQKIEQEIKKLEFYRMFSKKNDYYDCYIDIQSGSGGTDAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + + E++ S + G K +SG F + E+G+HR+ Sbjct: 127 DWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIKSSTIKVSGEYAFGWFRTETGIHRLI 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +++ + P+ E D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 187 RKSPFDSGKRRHTSFSSIFIYPDINEKIDININYSDLRIDVYRASGAGGQHVNRTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ + +SQH+N+ +AMK ++++LY+++ ++ E+ K I G+ Sbjct: 247 ITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYEIQMRKKQEEKQKIEQNKSDITWGN- 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y +I D R + ++ VL G +DD I L Sbjct: 306 --QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLDDFIEQSL 345 >gi|282880596|ref|ZP_06289302.1| putative peptide chain release factor 2 [Prevotella timonensis CRIS 5C-B1] gi|281305491|gb|EFA97545.1| putative peptide chain release factor 2 [Prevotella timonensis CRIS 5C-B1] Length = 374 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 155/351 (44%), Gaps = 20/351 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K F E +LR + + E+ + I + Y+Q +Q +L Sbjct: 23 IDQKKIEFEEEQLRTQAPDFWEDPQRAQEQMIKVKGIEKWLKGYEQVRQMADELQLAYEF 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + I +LE + + +D C+++I +G GG+E+ + Sbjct: 83 YRDDMVTEEELDHDYAKAIAAIEDLEL----KNMLRQKEDPMDCVMKINSGAGGTESQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS-GRGVFSRMKFESGVHRVQR 187 L RMY R+A +K V D ++ G K + I + +K E+GVHR+ R Sbjct: 139 AQMLMRMYMRWAEAHDYKCTVSDIQDGEEAGIKSVTMKIEGNEYAYGFLKSENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR-IDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P + DT R+SG+GGQ+VN +S VR+ Sbjct: 199 VSPFNAQGKRMTSFASVFVSPLVDDTIEVFVDPACVSWDTFRSSGAGGQNVNKVESGVRL 258 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 + ++ + + Q +NR +AM++L+++LYD K+ ++ K Sbjct: 259 RYQYHDPDTGEEEEILIENTETRDQPKNRAKAMQLLKSQLYDRAMKKRLEAQAKIEAGKK 318 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G IDD I L Sbjct: 319 KIEWG---SQIRSYVFDDRRVKDHRTNFQTTDVDGVMDGKIDDFIKAYLME 366 >gi|15617035|ref|NP_240248.1| peptide chain release factor 2 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219681787|ref|YP_002468173.1| peptide chain release factor 2 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471489|ref|ZP_05635488.1| peptide chain release factor 2 [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|25299669|pir||F84980 peptide chain release factor 2 [imported] - Buchnera sp. (strain APS) gi|10039100|dbj|BAB13134.1| peptide chain release factor 2 [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|219624630|gb|ACL30785.1| peptide chain release factor 2 [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311087327|gb|ADP67407.1| peptide chain release factor 2 [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 349 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 178/342 (52%), Gaps = 15/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R EI+L +S + KL +E ++ II I+ ++ +E + Sbjct: 12 NKKKSRVLEIDLELSSPKTWTEQISIKKLNKEKYLLNSIIQNINEIEENIKEVVIFLELA 71 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ ++I + ++ + + +D C ++I++G+GG++A Sbjct: 72 IETQDNLVFKESL-----LEIQKIEQEIKKLEFYRMFSKKNDHYDCYIDIQSGSGGTDAQ 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + + E++ S + G K +SG F + E+G+HR+ Sbjct: 127 DWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIKSSTIKVSGEYAFGWFRTETGIHRLI 186 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +++ + P+ E D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 187 RKSPFDSGKRRHTSFSSIFIYPDINEKIDININYSDLRIDVYRASGAGGQHVNRTESAVR 246 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ + +SQH+N+ +AMK ++++LY+++ ++ E+ K I G+ Sbjct: 247 ITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYEIQMRKKQEEKQKIEQNKSDITWGN- 305 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y +I D R + ++ VL G +DD I L Sbjct: 306 --QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLDDFIEQSL 345 >gi|329120961|ref|ZP_08249592.1| peptide chain release factor RF2 [Dialister micraerophilus DSM 19965] gi|327471123|gb|EGF16577.1| peptide chain release factor RF2 [Dialister micraerophilus DSM 19965] Length = 328 Score = 193 bits (491), Expect = 3e-47, Method: Composition-based stats. Identities = 95/326 (29%), Positives = 166/326 (50%), Gaps = 6/326 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 MS+ D K + Y + + + L ++ + + + + Sbjct: 1 MSDPSFWDDSEKARAISQKATQAKDAYETYTKLFERAESLQELLDMAIEEDD--QGMEGD 58 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +E+ + N+ LL + D + I+ AG GG+EA + L RMY ++A Sbjct: 59 LKQEIEELSAILNKKEIELLLNEEYDTNNAIITFHAGAGGTEAQDWTEMLIRMYIKWAES 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + +E L+ D+ G K I G + +K E GVHR+ R+ +A+ R HTS + Sbjct: 119 EGYGIEELNMLPGDEAGIKSAEYIIKGEFAYGLLKSEKGVHRLVRISPFDAAKRRHTSFS 178 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEK 260 V V+PE + +I+VD+ + D+R+D RASG+GGQHVN T SAVR+TH+PTGI+ +E+ Sbjct: 179 AVDVMPEISDDIEVDLNMNDVRVDYYRASGAGGQHVNKTSSAVRMTHLPTGIVAACQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQ QN+ + +++LRA+L+++E K+ + + Q + +IR+Y F + D+ Sbjct: 239 SQTQNKEQCLRILRAKLFELEMKKHEQLKRNIQGEQQA-IEWGSQIRSYVFQPYTLVKDN 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLT 345 R + ++ V+ G ++ I L Sbjct: 298 RTGVETGNVQAVMDGDLNPFIEGFLK 323 >gi|269959607|ref|ZP_06173988.1| peptide chain release factor 2 [Vibrio harveyi 1DA3] gi|269835665|gb|EEZ89743.1| peptide chain release factor 2 [Vibrio harveyi 1DA3] Length = 260 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 97/260 (37%), Positives = 150/260 (57%), Gaps = 7/260 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + + ++ + + D C ++++AG+GG+EA + + RMY R+A + +K EV Sbjct: 1 MEQKLEQLEFRRMFSGDHDSSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFKAEV 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE Sbjct: 61 IEVSEGEVAGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPE 120 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E +DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 121 IDENIAIDINPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVEN 237 Query: 326 YKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 238 RNTQAVLDGDLDKFIEASLK 257 >gi|225175296|ref|ZP_03729291.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1] gi|225169048|gb|EEG77847.1| peptide chain release factor 2 [Dethiobacter alkaliphilus AHT 1] Length = 288 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 114/287 (39%), Positives = 164/287 (57%), Gaps = 13/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D E+ A+ + E+ +LE +L + D + I+ I G GG+E+ Sbjct: 3 LAEDEGDKELWVDAEQVAAELAAEMDKLEL----AVLFRGRYDANNAIIAIHPGAGGTES 58 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R ++VEVL D+ G K I GR + +K E GVHR+ Sbjct: 59 QDWANMLLRMYTRWAERRNYQVEVLDLLPGDEAGIKSATLLIKGRNAYGFLKAERGVHRL 118 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDV--DIPLEDIRIDTMRASGSGGQHVNTTDSA 243 R+ +A+ R HTS A++ VLPE E D +I +D++IDT RASG+GGQHVNTTDSA Sbjct: 119 VRISPFDAASRRHTSFASLDVLPEVEEGDSGIEISPDDLKIDTYRASGAGGQHVNTTDSA 178 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITHIPTG +V +E+SQH NR RAMK+L+ARL D+ +++ A E S R Q I G Sbjct: 179 VRITHIPTGTVVQCQNERSQHSNRDRAMKILKARLADLYQRQQAEELSNLRGEQKEIAWG 238 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR + + + V+ G +D++I L Sbjct: 239 ---SQIRSYVFQPYTMVKDHRTGVEVGNINAVMDGDLDELIESYLRQ 282 >gi|114326944|ref|YP_744101.1| peptide chain release factor 2 [Granulibacter bethesdensis CGDNIH1] gi|114315118|gb|ABI61178.1| bacterial peptide chain release factor 2 (RF-2) [Granulibacter bethesdensis CGDNIH1] Length = 323 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 97/311 (31%), Positives = 164/311 (52%), Gaps = 13/311 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E ++ + + + + + +L + + + D + A+ + I E + LE Sbjct: 1 MMRERTRLASQVEGVLRMESEVSDATELAEMA-EADGDEAMATDARRMLETIAAEAKRLE 59 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D LEI +G GG+EA + L RMY R+A +KV ++ SD Sbjct: 60 I----ESLLSGEADGNDAYLEINSGAGGTEAQDWAEMLLRMYTRWAEAHGYKVTLIEQSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 + G K ++G + +K E+GVHR+ R+ +++ R TS A++ V P I Sbjct: 116 GEQAGIKSATLQVAGPSAYGWLKTEAGVHRLVRISPFDSAARRQTSFASIWVYPVVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +++I D+++DT RASG+GGQHVN T+SA+RITH+P+GI+V +++SQH+NR AM + Sbjct: 176 EIEINEADLKVDTFRASGAGGQHVNKTESAIRITHVPSGIIVACQTDRSQHRNRATAMNM 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 L+ARLY+ E ++ K +IG G +IR+Y + + + D R N+ Sbjct: 236 LKARLYEAELQKREAAAQEQENAKSEIGWG---HQIRSYVLAPYQLVKDLRTNVEKGNPG 292 Query: 330 YVLQGYIDDII 340 VL G +D+ + Sbjct: 293 AVLDGDLDEFM 303 >gi|288927134|ref|ZP_06421019.1| peptide chain release factor 2, programmed [Prevotella buccae D17] gi|288336096|gb|EFC74492.1| peptide chain release factor 2, programmed [Prevotella buccae D17] Length = 373 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 90/352 (25%), Positives = 156/352 (44%), Gaps = 20/352 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I K F E +LR + + E+ + I + Y + +Q +L Sbjct: 22 DIDKKKVEFEEEQLRTQAPDFWEDPTRAQEQMKKVKSIEKWLDGYKEVRQYADELQLAFD 81 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + + K I LE + + +D +++I +G GG+E+ Sbjct: 82 FFHDDMVSEEEVDADYAKAIKAIEALEL----KNMLRQKEDPMEAVIKINSGAGGTESQD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQ 186 + L RMY R+ ++ V + + D+ G K + + G + +K E+GVHR+ Sbjct: 138 WASMLMRMYMRWCEAHGYRCTVSNLQEGDEAGIKSVTMEVEGGEYAYGYLKSENGVHRLV 197 Query: 187 RVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 RV A G+ TS A+V V P I+V + + DT R+ G+GGQ+VN +S VR Sbjct: 198 RVSPFNAQGKRMTSFASVFVSPLVDDTIEVFVDPARLSWDTFRSGGAGGQNVNKVESGVR 257 Query: 246 ITH---------IPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--K 294 + + ++ + + Q +NR +AM +L+++LYD K+ ++ K Sbjct: 258 LRYWYQDPDTGEEEEILIENTETRDQPKNRAKAMLLLKSQLYDRAMKKRLEAQAKIEAGK 317 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G ID+ I L Sbjct: 318 KKIEWG---SQIRSYVFDDRRVKDHRTNYQTADVDGVMDGKIDEFIKAYLME 366 >gi|119952877|ref|YP_945086.1| peptide chain release factor 2 [Borrelia turicatae 91E135] gi|119861648|gb|AAX17416.1| bacterial peptide chain release factor 2 [Borrelia turicatae 91E135] Length = 353 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 176/344 (51%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +K + E E ++++ + K E + + +KI ++ + +DL + Sbjct: 17 NKIKVKLKEYEKQINDENFWNDNKKAQEILKNQNILKAKIEPWEDLICKLKDLRELCEIA 76 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S+ + L Q E+ L L K+ D + L I +G GG+EA +V Sbjct: 77 ESEEDTALLDQDINKLREQYKHLL-----TLSYFKEDIDINNAFLTIHSGAGGTEACDWV 131 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+R+Y RY+ +K E++ + + GG K + I G + +K E G+HR+ R+ Sbjct: 132 SMLYRIYLRYSERHGYKTELIDLLEAE-GGIKSVTIEIKGEYAYGFLKSEVGIHRLVRIS 190 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V + +I++ I EDIR+DT RASG+GGQHVN T SAVRITH Sbjct: 191 PFDAAKKRHTSFASVFIDPVIDDKIEITIKPEDIRVDTYRASGAGGQHVNKTSSAVRITH 250 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDRSER 305 + TGI+ + +++SQH+N+ AM+VL+++LY+ + ++ ++ K I G+ + Sbjct: 251 LQTGIVTQSQTDRSQHRNKDLAMRVLKSKLYEHYKILEQQKSKSKQEEKKDISWGN---Q 307 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y F + DHR + V+ G ID+ I L Sbjct: 308 IRSYIFQPYTLVKDHRTKFENPNIISVMDGNIDNFIEEYLKWKN 351 >gi|123967735|ref|YP_001008593.1| peptide chain release factor 2 [Prochlorococcus marinus str. AS9601] gi|123197845|gb|ABM69486.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. AS9601] Length = 354 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 96/339 (28%), Positives = 176/339 (51%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK + E+E ++ D + ++ + + +++ + D+ K D + + ++ Sbjct: 11 LKAKRKELEQISAQPEFWDNQEEAKKQMLILDDVKAQLELLDKWKTFISDANASLELYSL 70 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + +E K++RE ++ + L D + ++ I AG GG++A +V Sbjct: 71 EPE--EEMILESQLGLKKLRENLDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEI 128 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + + S ++ G K + I G+ + ++ E G HR+ R+ Sbjct: 129 LLRMYSRWADNNQMSLVINELSQGEEAGIKSVTFEIEGKYAYGYLQHEKGTHRLVRISPF 188 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P Sbjct: 189 NANGKRQTSFAGVEVMPKLDDNISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLP 248 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 +GI V + E+SQ QN+ +AM +L+++L + +++ A E + K I +IR Y Sbjct: 249 SGISVRCTQERSQLQNKEKAMLLLKSKLLVIAKEQRAAEVADI-KGDIVEAAWGNQIRNY 307 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R +L+ VL G +D I+ LL + Sbjct: 308 VFHPYQMVKDLRTMQETNELDSVLDGGLDPFIHELLRMN 346 >gi|115524982|ref|YP_781893.1| peptide chain release factor 2 [Rhodopseudomonas palustris BisA53] gi|115518929|gb|ABJ06913.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodopseudomonas palustris BisA53] Length = 322 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 94/317 (29%), Positives = 156/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + I +++ + + + DS + + + R Sbjct: 1 MQERTSLEDSLDGIGKVERELDDNVGMIELGEAEGDDSVVAEAEAALKKLKKDVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +K+E L ++ Sbjct: 57 -RELEALLSGEADRFDSYLEVHAGAGGTESQDWASMLLRMYTRWAEKHGFKIEYLEETEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPYDSNARRHTSFSSVQIFPVVDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+TH+PTG+ +V + +SQH+N+ +A +L Sbjct: 176 IDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHVPTGVAVVCQAGRSQHKNKAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|167011047|ref|ZP_02275978.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica FSC200] Length = 248 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 99/248 (39%), Positives = 146/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D L+I++G+GG+EA + L RMY R+A +KV V SD D G K Sbjct: 1 MFSGKMDANKAFLDIQSGSGGTEAQDWAEMLMRMYMRWADSHGFKVTVDDVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 I G + ++ E+G+HR+ R +++ + HTS A+V + PE +ID++I Sbjct: 61 GCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRHTSFASVFISPEVDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + S++SQH+NR AMK L+++LY+ Sbjct: 121 DLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQSQSDRSQHKNRDNAMKQLKSKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E++ + K IG G +IR+Y Q RI D R + + VL G +D Sbjct: 181 MELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQSRIKDLRTGVENTNTQAVLDGDLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|297623932|ref|YP_003705366.1| hypothetical protein Trad_1705 [Truepera radiovictrix DSM 17093] gi|297165112|gb|ADI14823.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093] Length = 377 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 103/354 (29%), Positives = 172/354 (48%), Gaps = 19/354 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 + + R AE+E ++S+ D LT+E A + ++ + + ++L Sbjct: 27 DLARKEARLAELEPQLSDPKLWDDPEAARTLTQEAARLRRVLETFHRLEGDLEGLRELQE 86 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ ++ R L DD++ IL I+ G GG+E Sbjct: 87 LATTPEEQQDLEAERAALQRTLDALYR--------ETLFSGPHDDRAAILTIKPGAGGTE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG--GYKEIVATISGRGVFSRMKFESGV 182 ++ + G L+RMY R+A + ++VE+L ++ +D G I G + ++ ESGV Sbjct: 139 SSDWAGMLWRMYRRFAERQGFEVELLDATPSDAAPNGIDYAQLIIRGERAYGLLQVESGV 198 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ RV +A GR HTS A+V V+PE + ++ I +D+R+D R+SG GGQ VNTTD Sbjct: 199 HRLVRVSPFDAQGRRHTSFASVEVMPEIDDAVEITIDPKDVRVDVYRSSGPGGQSVNTTD 258 Query: 242 SAVRITHIPTG----IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 SAVR+ + ++ KSQ +NR +AM VLR+RL++ E +R E+ R Q Sbjct: 259 SAVRVVYKGGTPEEIVVTCQDGKSQIKNREKAMTVLRSRLFEREERRRLEEQMRARGEQK 318 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + +IR+Y + + DHR + + VL G I+ +I L Sbjct: 319 A-IEWGSQIRSYVLDKRYVKDHRTGEMRHDPDDVLDGDIEGLIWSGLEHRARTQ 371 >gi|88860263|ref|ZP_01134901.1| peptide chain release factor 2 (RF-2) [Pseudoalteromonas tunicata D2] gi|88817461|gb|EAR27278.1| peptide chain release factor 2 (RF-2) [Pseudoalteromonas tunicata D2] Length = 260 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 94/252 (37%), Positives = 144/252 (57%), Gaps = 7/252 (2%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + D L++++G+GG+EA + L RMY R+A + +K E++ ++D D Sbjct: 9 EFRRMFSGDFDQNDAYLDLQSGSGGTEAQDWCNILLRMYLRWADAKGFKAELVEATDGDV 68 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVD 216 G K I G + ++ E+GVHR+ R ++ GR HTS A+ V PE + +D Sbjct: 69 AGIKGATVRIVGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFVYPEIDDNIKID 128 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I D+RID RASG+GGQHVNTT+SAVRITH+PT +V +E+SQH+N+ +AMK L+A Sbjct: 129 INPADLRIDVYRASGAGGQHVNTTESAVRITHLPTNTVVQCQNERSQHKNKDQAMKQLKA 188 Query: 276 RLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +L+++E ++ E+ + K IG G +IR+Y RI D R + + VL Sbjct: 189 KLFELELQKQNAEKQTQEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIENRNTQAVLD 245 Query: 334 GYIDDIINPLLT 345 G +D I L Sbjct: 246 GDLDKFIEASLK 257 >gi|299529204|ref|ZP_07042649.1| peptide chain release factor 2 [Comamonas testosteroni S44] gi|298722827|gb|EFI63739.1| peptide chain release factor 2 [Comamonas testosteroni S44] Length = 248 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C ++I+AG GG+EA + L R Y +YA + +K V + D G K Sbjct: 1 MFGGEADPLNCFIDIQAGAGGTEACDWASMLLRQYLKYAERKGFKATVEEETPGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 + G + ++ E+GVHR+ R ++SG HTS +++ V PE + +++I Sbjct: 61 SATIKVEGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFSSLFVYPEIDDSIEININPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +SQH NR A + LR+RLYD Sbjct: 121 DVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVQCQDGRSQHSNRDVAWQRLRSRLYD 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K +G G +IR+Y RI D R N+ + + VL G +D Sbjct: 181 FEMRKRMEEQQKLEDTKTDVGWG---HQIRSYVLDNSRIKDLRTNVEVSATQKVLDGDLD 237 Query: 338 DIINPLLTA 346 I L Sbjct: 238 VFIEASLKQ 246 >gi|189459974|ref|ZP_03008759.1| hypothetical protein BACCOP_00608 [Bacteroides coprocola DSM 17136] gi|189433347|gb|EDV02332.1| hypothetical protein BACCOP_00608 [Bacteroides coprocola DSM 17136] Length = 371 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D K + + + Sbjct: 1 MITIEQLKDVKTRTEALYRYLDIENKKVQVEEEQLRTQAPGFWDDAKKAEAQMKKVKSLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I Y+ K +L + + + + + ELE + Sbjct: 61 GWIEGYNAVKTLTDELELAFDFYKDELVTEEEVDEAYAKSLQALEELELKNMLRSEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ G K + Sbjct: 121 D----CVLKINSGAGGTESQDWSSMLMRMYMRWAESNGYKLSVANLQEGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + + D Sbjct: 177 IEGAYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVVVEPARLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|282878031|ref|ZP_06286839.1| putative peptide chain release factor 2 [Prevotella buccalis ATCC 35310] gi|281299866|gb|EFA92227.1| putative peptide chain release factor 2 [Prevotella buccalis ATCC 35310] Length = 374 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 20/351 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K F E +LR + + E+ + I + Y Q +Q +L Sbjct: 23 IDQKKVEFEEEQLRTQAPDFWEDPKRAQEQMIKVKGIEKWLVGYQQVRQLADELELAFDF 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + D + I LE + + T+D C+++I +G GG+E+ + Sbjct: 83 YRDEMITEDELDADYAKAVAAIEHLE----MKNMLRQTEDPMDCVMKINSGAGGTESQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQR 187 L RMY R+A +K + D D+ G K + I G + +K E+GVHR+ R Sbjct: 139 AQMLMRMYMRWAEAHDYKCTISDIQDGDEAGIKSVTMKIEGGEYAYGYLKSENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P I+V + + DT R+SG+GGQ+VN +S VR+ Sbjct: 199 VSPFNAQGKRMTSFASVFVSPLVDDTIEVFVDPARVSWDTFRSSGAGGQNVNKVESGVRL 258 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 + ++ + + Q +NR +AM++L+++LYD K+ ++ K Sbjct: 259 RYQYEDPDTGEEEEILIENTETRDQPKNRAKAMQLLKSQLYDRAMKKRLEAQAKIEAGKK 318 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G +D+ I L Sbjct: 319 KIEWG---SQIRSYVFDDRRVKDHRTNYQTTDVDAVMDGKLDEFIKAYLME 366 >gi|312220543|emb|CBY00484.1| similar to peptide chain release factor 1 [Leptosphaeria maculans] Length = 418 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 112/363 (30%), Positives = 199/363 (54%), Gaps = 26/363 (7%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 ++ ++++ ++ ++ SPI++ + +D+ + +L ++I D +D E Sbjct: 52 EHKQLAAKLNDGFD----TRIAKKLGEYSPIVNALGKWDKANESVTELTSLIHDSTTDPE 107 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 +R+LA +++ +++ + L+P C+LE+R G GGSEAA+F GDLFR Sbjct: 108 LRELAADDLIETREQLSAASQSLITALVPVHPFAHLPCLLELRPGAGGSEAAIFAGDLFR 167 Query: 135 MYERYAALRKWKVE---VLSSSDNDDGGY--KEIVATISGRGVFSRMKFESGVHRVQRVP 189 MY + ++ + + + G E V + + + E+GVHRVQRVP Sbjct: 168 MYLAFCNRNGFRTNLLKYENINGTSEAGVPLSEAVLEVENDNAYGVFRCEAGVHRVQRVP 227 Query: 190 ATEASGRVHTSAATVAVLP------------EAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 ATE GR HTSA +V VLP + + D I +++++++ MRASG+GGQHV Sbjct: 228 ATETKGRTHTSAVSVHVLPSLQENNSSEENFDDPDSDYYIDVKEVKVEVMRASGAGGQHV 287 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVR+TH+PT +V +SQH+N+ +A +LR+R+ R++ E S R+ Sbjct: 288 NKTESAVRLTHLPTNTVVAMQDSRSQHKNKEKAWALLRSRIAQSRREQREEEISNMRRSV 347 Query: 297 IG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 IG R +++RTYN+ Q R+TDHR LT++ L+ V++G ++ ++ + + + + Sbjct: 348 IGVAKMGRGDKVRTYNWGQQRVTDHRSGLTVHDLDDVMEGGQNLEKVMESVRSWLMERDV 407 Query: 353 GSA 355 + Sbjct: 408 EAL 410 >gi|194246500|ref|YP_002004139.1| Bacterial peptide chain release factor 2 [Candidatus Phytoplasma mali] gi|193806857|emb|CAP18286.1| Bacterial peptide chain release factor 2 [Candidatus Phytoplasma mali] Length = 363 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 101/344 (29%), Positives = 179/344 (52%), Gaps = 12/344 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + K R ++ ++ S + + K + + KI + +E +DL +++ Sbjct: 26 LNKQKKRLKDLNHLINLSNFWENFEKAKKINQEFKSLNEKIYKMQKFHEEYRDLLSLLKI 85 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 +++ + + +++ + +L T D K+ IL + G GG E+ + Sbjct: 86 TKENTD----DFLFLEQTLLSLKKNIQDFEINILLNQTYDKKNAILILHPGAGGIESQDW 141 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY++YA + +K+ VL D G K + I G + +K E GVHR+ R+ Sbjct: 142 CEMLLRMYQKYAQKKNFKIVVLDYQVGDVAGLKSVSLLIKGVYAYGYLKSEKGVHRLVRI 201 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS + VLPE E I E+++ID R+SG+GGQHVNTTDSAVR+T Sbjct: 202 SPFDSNSKRHTSFTSCDVLPEINENIEIKIKEEELKIDVFRSSGAGGQHVNTTDSAVRLT 261 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSE 304 H+PT I++ +E+SQ +N+ RA+++L+ +L+ E K+ + +Q I G+ Sbjct: 262 HLPTNIVINCQNERSQTRNKERALQILKTKLFQREIKKQEINLKLIQGVQKEISWGN--- 318 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y F + + DHR N+ Y++E V+ G +D I+ L + Sbjct: 319 QIRSYIFHPYQLVKDHRTNVESYQIESVIDGDLDLFISSFLKKN 362 >gi|260460705|ref|ZP_05808955.1| peptide chain release factor 2 [Mesorhizobium opportunistum WSM2075] gi|259033282|gb|EEW34543.1| peptide chain release factor 2 [Mesorhizobium opportunistum WSM2075] Length = 322 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 106/317 (33%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + Q ++ L + + + I + + Sbjct: 1 MRERQGLEEGIASVKGLTQALEDNIGLIELGEEEGDEGVIAEAEAALRSMQGEAKA---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A R++KVEVL D Sbjct: 57 -RQVETLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERRRFKVEVLEVHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + +K ESGVHR+ R+ +++ R HTS A+V V P I+ Sbjct: 116 EEAGIKSATLLIKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASVWVYPVIDDTIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +D+ D+RIDT R+SGSGGQHVNTTDSAVRITHI TGI + +E+SQH+N+ +A ++L Sbjct: 176 IDVSESDVRIDTYRSSGSGGQHVNTTDSAVRITHIATGIAVACQAERSQHKNKAKAWEML 235 Query: 274 RARLYDVERKRMA--NERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 R+RLY+ E K+ + K IG G +IR+Y + + D R + Sbjct: 236 RSRLYEEELKKREAVANATEASKSDIGWG---HQIRSYVLQPYQLVKDLRTGVESTSPSS 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L+ Sbjct: 293 VLDGDLDDFMEASLSQR 309 >gi|164687096|ref|ZP_02211124.1| hypothetical protein CLOBAR_00722 [Clostridium bartlettii DSM 16795] gi|164603981|gb|EDQ97446.1| hypothetical protein CLOBAR_00722 [Clostridium bartlettii DSM 16795] Length = 349 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 107/351 (30%), Positives = 174/351 (49%), Gaps = 11/351 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I + + + E +++ D K + S + + I+ ++ + + Sbjct: 1 MFPFD-IASKQAQIQKYEEEINKQDFWDDNEKAQKILQQNSDLKNIIAEFEGLNSDLE-- 57 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 I E + + ++ K++ + +E+ L D + +L I AGTGG Sbjct: 58 EIEILIELGLEEEDESIEHDIEKSIKKLEDKIDEVKIKTLLNGKYDVNNAVLSINAGTGG 117 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +A + RMY R+A +KV+ L + + G K + I G + +K E GV Sbjct: 118 LDAQDCAQMILRMYLRWADQNNFKVKTLDMISDPEAGIKSVTLLIQGTNAYGYLKSEKGV 177 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +ASG+ HTS +V V PE +IDV+I D++IDT R+SG+GGQHVN TD Sbjct: 178 HRIVRISPFDASGKRHTSFVSVDVTPELDDKIDVEINPNDLKIDTYRSSGAGGQHVNKTD 237 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIG 298 SAVRITHIPTGI+V +E+SQ N+ AMK+L+ +L ++ + QI Sbjct: 238 SAVRITHIPTGIVVQCQNERSQFANKDTAMKMLKGKLIHLKELENKERIEDIQGKYSQIT 297 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 G +IR+Y F + + DHR N + ++ V+ G I+ IN L ++ Sbjct: 298 WG---SQIRSYVFQPYKLVKDHRTNAEIGNVDSVMDGNINLFINEYLKMNK 345 >gi|290954114|ref|ZP_06558735.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica URFT1] gi|295312499|ref|ZP_06803267.1| peptide chain release factor 2 [Francisella tularensis subsp. holarctica URFT1] Length = 241 Score = 193 bits (490), Expect = 4e-47, Method: Composition-based stats. Identities = 98/240 (40%), Positives = 144/240 (60%), Gaps = 7/240 (2%) Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 L+I++G+GG+EA + L RMY R+A +KV V SD D G K I G Sbjct: 2 NKAFLDIQSGSGGTEAQDWAEMLMRMYMRWADSHGFKVTVDDVSDGDVAGIKGCTLKIEG 61 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMR 228 + ++ E+G+HR+ R +++ + HTS A+V + PE +ID++I D+R+DT R Sbjct: 62 EYAYGWLRTETGIHRLVRKSPFDSNSKRHTSFASVFISPEVDDDIDIEINPADLRVDTYR 121 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQHVN TDSAVRITHIPT I+V + S++SQH+NR AMK L+++LY++E ++ Sbjct: 122 ASGAGGQHVNKTDSAVRITHIPTNIVVQSQSDRSQHKNRDNAMKQLKSKLYEMELQKRNA 181 Query: 288 ERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 E++ + K IG G +IR+Y Q RI D R + + VL G +D I L Sbjct: 182 EKNALEDSKADIGWG---SQIRSYVLDQSRIKDLRTGVENTNTQAVLDGDLDKFIEASLK 238 >gi|148657451|ref|YP_001277656.1| peptide chain release factor 2 [Roseiflexus sp. RS-1] gi|148569561|gb|ABQ91706.1| bacterial peptide chain release factor 2 (bRF-2) [Roseiflexus sp. RS-1] Length = 317 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 105/318 (33%), Positives = 153/318 (48%), Gaps = 12/318 (3%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + + +I D++ DL + + DS D+A E Sbjct: 1 MQRLTRLKEEVERIEAIDRQLTALADLIELAAAEDDDSLQADIAAELKRTGEAIEA---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + +L DD+ L I+AGTGG++A + L RMY R+ R ++V ++ S+ Sbjct: 57 -LEIEVLLNGPYDDRDAFLSIKAGTGGTDAQDWAEMLLRMYMRWGERRGFQVALIDKSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-ID 214 ++ G K + G + K E+GVHR+ R+ A TS A V VLPE + + Sbjct: 116 EEAGIKSATIELRGPYAYGSAKAEAGVHRLIRLSPFNAGNTRQTSFAMVEVLPEVDDAPE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG----IMVTSSEKSQHQNRLRAM 270 V I EDIRID R+SG GGQ VNTTDSAVRIT+ P ++ +E+SQ QNR AM Sbjct: 176 VVIRPEDIRIDVFRSSGHGGQGVNTTDSAVRITYKPGTPEQIVVTCQNERSQLQNRETAM 235 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE 329 +VLR RL + E +R ER+ R + D ++RTY + DHR + + Sbjct: 236 RVLRGRLLERELQRKREERARLR-GEYRQADFGNQMRTYYLHPYTLVKDHRTDHETSDVH 294 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G ID I L + Sbjct: 295 AVLDGDIDPFIEAYLRWN 312 >gi|260889274|ref|ZP_05900537.1| peptide chain release factor 2 [Leptotrichia hofstadii F0254] gi|260860685|gb|EEX75185.1| peptide chain release factor 2 [Leptotrichia hofstadii F0254] Length = 352 Score = 193 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 183/347 (52%), Gaps = 12/347 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVD--AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I +LKN +E + E+ + ++ + + ++ + S + ++ + Sbjct: 13 DIENLKNEIDGLEKKTFEADFWNSENSQEILKAISTNKKLLEEYSSLNGLFEDVSTIIEF 72 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++ E + ++++ + LL + D + IL I +G GG+EA Sbjct: 73 IEMGDNSFENE------LEQKAQDLKNEIDNFKTKLLLDEEYDMNNAILTINSGAGGTEA 126 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY+R+A +KVE+L S ++ G K + I G + +K E GVHR+ Sbjct: 127 CDWAEMLYRMYDRWANRHDFKVEILDSLAGEEAGIKSVTLNIKGNYAYGYLKGEKGVHRL 186 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS A V V PE + ++DI ED++IDT RASG+GGQHVNTTDSAV Sbjct: 187 VRISPFDSNARRHTSFAAVNVTPEIEDDVEIDIRTEDLKIDTYRASGAGGQHVNTTDSAV 246 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITHIPT +V +E+SQ +NR AMK+L+++L+++E ++ E + + + + Sbjct: 247 RITHIPTNTVVTCQNERSQLKNRETAMKILKSKLFELELEKREKEMAELKGTE-SKIEWG 305 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR+Y F + DHR +E V+ G ID IN L ++ Sbjct: 306 SQIRSYVFQPYKMVKDHRTKAEEGNVEKVMDGDIDLFINEYLKYAKS 352 >gi|262163922|ref|ZP_06031661.1| peptide chain release factor 2 [Vibrio mimicus VM223] gi|262172260|ref|ZP_06039938.1| peptide chain release factor 2 [Vibrio mimicus MB-451] gi|261893336|gb|EEY39322.1| peptide chain release factor 2 [Vibrio mimicus MB-451] gi|262027450|gb|EEY46116.1| peptide chain release factor 2 [Vibrio mimicus VM223] Length = 263 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 100/263 (38%), Positives = 150/263 (57%), Gaps = 7/263 (2%) Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ ++ + + D C L+++AG+GG+EA + L RMY R+A + +K Sbjct: 1 MDELEVKLEQLEFRRMFSGDHDSSDCYLDLQAGSGGTEAQDWTSMLLRMYLRWADAKGFK 60 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ D G K I G + ++ E+GVHR+ R ++ GR HTS A+ + Sbjct: 61 TEVIEVSEGDVAGLKSATVRIIGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFI 120 Query: 207 LPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 PE E D++I D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+ Sbjct: 121 YPEVDENIDIEINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHK 180 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R Sbjct: 181 NKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTG 237 Query: 323 LTLYKLEYVLQGYIDDIINPLLT 345 + + VL G +D I L Sbjct: 238 IENRNTQAVLDGDLDKFIEASLK 260 >gi|313157406|gb|EFR56829.1| putative peptide chain release factor 2 [Alistipes sp. HGB5] Length = 370 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 103/377 (27%), Positives = 164/377 (43%), Gaps = 37/377 (9%) Query: 3 FLSHKQICDLKNR-----------------FAEIELRMSESPSVDAYIKLTEEYAAISPI 45 + QI DL+ R E E + D + E+ ++ I Sbjct: 1 MILADQIKDLEQRSGALERCLNIEQKRIDLLNE-EEKTQVPDFWDNPDQAREQLRRVAAI 59 Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + YD ++ +DL + + I +LE + + Sbjct: 60 KAWVDDYDAVAKDVEDLALMPEFVKEGVVSEQEMDAHYAQTLERIEKLE----MRNMLRR 115 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 +D IL+I AG GG+EA + L RMY R+ +KV+VL D+ G K Sbjct: 116 DEDKLGAILDINAGAGGTEALDWASMLLRMYTRWGEAHGYKVKVLDYQAGDEVGVKSCTL 175 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRI 224 G + +K E+GVHR+ R+ A+ + T+ A+V V P I+V + DI Sbjct: 176 EFEGEYAYGYLKSENGVHRMVRLSPFNANNKRQTTFASVFVSPAVDDTIEVTVNPSDIEW 235 Query: 225 DTMRASGSGGQHVNTTDSAVRITHI----PTGIMVT-----SSEKSQHQNRLRAMKVLRA 275 DT RASG+GGQ+VN ++AVR+ + TG V +SQ NR AM++L++ Sbjct: 236 DTFRASGAGGQNVNKVETAVRLRYHGKDADTGEAVEFLIENMETRSQLMNRENAMRILKS 295 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LY E + + A K +I G +IR+Y F R+ DHR + +E V+ Sbjct: 296 KLYQRELDKRMATQQALEASKKKIEWG---SQIRSYVFDDRRVKDHRTGVQTSAVEAVMD 352 Query: 334 GYIDDIINPLLTAHQAK 350 G +D+ I L + A+ Sbjct: 353 GGLDEFIKAYLMEYGAE 369 >gi|91976917|ref|YP_569576.1| peptide chain release factor 2 [Rhodopseudomonas palustris BisB5] gi|91683373|gb|ABE39675.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodopseudomonas palustris BisB5] Length = 322 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 159/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ + ++ + D + + ++ R Sbjct: 1 MQERTSLEDALTGIGKVERELTDNVEMIELGEAEGDDGVVSEAEAALKALKKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +K+E L S+ Sbjct: 57 -RELEALLSGEADRFDSYLEVHAGAGGTESQDWASMLLRMYTRWAEKHGFKIEYLEESEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQIFPVIDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|320335022|ref|YP_004171733.1| peptide chain release factor 2 [Deinococcus maricopensis DSM 21211] gi|319756311|gb|ADV68068.1| Peptide chain release factor 2 [Deinococcus maricopensis DSM 21211] Length = 363 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 99/363 (27%), Positives = 167/363 (46%), Gaps = 19/363 (5%) Query: 7 KQICDLKN---------RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 +++ L+ R E++ + + + + + + Y Sbjct: 6 EKLAALREYLDIPGKTRRLNELDKELEDPNLWNDQERARRVTQEATTLRRVTEGYASLSS 65 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + Q L ++ + D + + + + E L + I+ I+ Sbjct: 66 DAQGLSEMLDIASDDEKEMLEEEQASIQQRVDDLYRE------TLFTMKHSEAPAIIRIK 119 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 +G GG+E+ + G L RMY R+A R +K E+L D + G + G + M Sbjct: 120 SGAGGTESQDWAGMLMRMYIRWAERRGFKTEILDQQDGEQAGITSAEFIVRGDRAYGMMA 179 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED--IRIDTMRASGSGGQ 235 E GVHR+ RV +++ R HTS A+V ++PE E +DI + D +R+D R+ G+GGQ Sbjct: 180 PEHGVHRLVRVSPFDSNNRRHTSFASVDIVPEVPEEQIDIHVPDSDVRVDVYRSQGAGGQ 239 Query: 236 HVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 VNTTDSAVR+TH+PTG+MV +SQ +NR A ++L+ RLYD+E K+ E R Sbjct: 240 GVNTTDSAVRVTHLPTGLMVAIQVTRSQIKNREMAFQILKQRLYDIEVKKREAEEMKARG 299 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 Q + +IR+Y + + DHR + + VL G I++ + L K Sbjct: 300 EQKA-IEWGSQIRSYVLDKQYVKDHRTGVMRHDTGNVLDGDIEEYMWAGLEWLAGKRAAE 358 Query: 355 ASE 357 ++ Sbjct: 359 NND 361 >gi|75675907|ref|YP_318328.1| peptide chain release factor 2 [Nitrobacter winogradskyi Nb-255] gi|74420777|gb|ABA04976.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrobacter winogradskyi Nb-255] Length = 322 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ +++ + + N ++ I + ++ R Sbjct: 1 MQERTSLEDSLAGIGKVERELEDQIGMIELGEAENDEAVIDESENALKALKKEVDR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A R +KVE L + Sbjct: 57 -RELEALLSGEADRFDTYLEVHAGAGGTESQDWAAMLLRMYTRWAEKRGFKVEYLEETPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K +SG + +K E+GVHR+ R+ +++ R HTS ++VA+ P I Sbjct: 116 EEAGIKSATVQVSGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVAIFPVVDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R DTMR+ G+GGQHVN T+SAVR+TH+PTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHVPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E KR K IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKRREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +DD + L Sbjct: 293 VLDGNLDDFMAATLAQR 309 >gi|302131691|ref|ZP_07257681.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. tomato NCPPB 1108] Length = 304 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 12/309 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ I+ + + +DL + + + I D+A + + + Sbjct: 2 LAQIVETLDEMSSGLVDAKDLLLMSAEEEDQAAIDDVAAEVERLRASLEK-----LEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S + G K Sbjct: 57 MFSGEMDPNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGTRRHTSFSAVFVSPEIDDNIEIDINPS 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ Sbjct: 177 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYE 236 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ + + K IG G +IR+Y RI D R N+ + VL G ID Sbjct: 237 QEVQKRNAASQALEDTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDID 293 Query: 338 DIINPLLTA 346 + + L Sbjct: 294 EYLIASLKQ 302 >gi|261881148|ref|ZP_06007575.1| peptide chain release factor RF2 [Prevotella bergensis DSM 17361] gi|270332153|gb|EFA42939.1| peptide chain release factor RF2 [Prevotella bergensis DSM 17361] Length = 374 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 89/374 (23%), Positives = 163/374 (43%), Gaps = 36/374 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R F E +LR D + + + + Sbjct: 1 MITSDQLKDVLERTTKLHHYLNIDKKQIEFEEEQLRTQAPDFWDDPKRAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + + Y + +L + + + + + K I +LE + + + Sbjct: 61 NWLKDYSDVELLANELELAFDYYKEELVTEEEVDADYAKVIKAIEDLE----FKNMLRSE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+E+ + L RMY R+ +KV + + D D+ G K + T Sbjct: 117 EDSMDAVLKINSGAGGTESQDWAQMLMRMYMRWCESHGYKVTITNLQDGDEAGIKSVTMT 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 + G + +K E+GVHR+ RV A G+ TS A+V + P + + Sbjct: 177 VEGGEFAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFISPLVDDTIEVYVDPARLSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +N+ +AM +L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEKEEILIENTETRDQPKNKAKAMLLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD E K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDREMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMD 353 Query: 334 GYIDDIINPLLTAH 347 G +D I L + Sbjct: 354 GDLDGFIKAYLMEY 367 >gi|327262069|ref|XP_003215848.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Anolis carolinensis] Length = 394 Score = 193 bits (489), Expect = 5e-47, Method: Composition-based stats. Identities = 128/292 (43%), Positives = 201/292 (68%), Gaps = 4/292 (1%) Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 K++E D + + ++ ++R LA+ E++ ++EI EL+ +I L+P + D+ I+ Sbjct: 82 KEEELGDTERLAREDENE-DLRKLAETEIVFCQEEIAELKRQIMLHLIPSEETDESDLIM 140 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 E+ +G GG EA LF ++F MY++YAA + W ++L + +D GG + A I+G + Sbjct: 141 EVTSGVGGQEAMLFTAEMFDMYQQYAAYKNWNFDILEYAPSDIGGLRYASAAIAGHEAYR 200 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 +MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +++RI+T RASG+GG Sbjct: 201 QMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPNEINLTINPKELRIETKRASGAGG 260 Query: 235 QHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVNTTDSAVRI HIPTG++ E+SQ +N+ +A+++LRA+LY+++ + + +R R Sbjct: 261 QHVNTTDSAVRILHIPTGVVSECQQERSQIKNKAKAIQILRAKLYNMKLEDESRKRETAR 320 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPL 343 K+Q G+ RSE+IRTYNF Q R+TDHRI+ +++ +E + G +D++I L Sbjct: 321 KIQTGTKGRSEKIRTYNFPQDRVTDHRISRSVHHIEQFMLGEELLDEMIQAL 372 >gi|299133776|ref|ZP_07026970.1| peptide chain release factor 2 [Afipia sp. 1NLS2] gi|298591612|gb|EFI51813.1| peptide chain release factor 2 [Afipia sp. 1NLS2] Length = 322 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + I +++ +++ + + N ++ + + + R Sbjct: 1 MQERTSLENQLGGIGRTERELEDQIGMIELGEAENDEAVVTEAENALKALKKDVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A + +KVE L + Sbjct: 57 -QELEALLSGEADKFDTYLEVHAGAGGTESQDWASMLLRMYTRWAERKGFKVEYLEETQG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS +++A+ P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPYDSNARRHTSFSSIAIFPVVDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDINESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|21282445|ref|NP_645533.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MW2] gi|88194533|ref|YP_499328.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|161509023|ref|YP_001574682.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|21203882|dbj|BAB94581.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus MW2] gi|87202091|gb|ABD29901.1| peptide chain release factor 2, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|160367832|gb|ABX28803.1| peptide chain release factor 2 [Staphylococcus aureus subsp. aureus USA300_TCH1516] Length = 291 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 102/289 (35%), Positives = 155/289 (53%), Gaps = 14/289 (4%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + DL Q + K LL D + ILE+ G GG+ Sbjct: 6 DLLQEEFDEEMKEDLEQEVINFKAKVDE-----YELQLLLDGPHDANNAILELHPGAGGT 60 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ + LFRMY+RY + +KVE + D+ G K + I G + +K E GVH Sbjct: 61 ESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVH 120 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 R+ R+ ++SGR HTS A+ V+P+ +++I +DI +DT RASG+GGQH+N T+ Sbjct: 121 RLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTE 180 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IG 298 SA+RITH P+GI+V +E+SQ +NR AMK+L+++LY ++ + A E + R Q IG Sbjct: 181 SAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIG 240 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 G +IR+Y F + DHR N K++ V+ G I I L Sbjct: 241 WG---SQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQ 286 >gi|167764194|ref|ZP_02436321.1| hypothetical protein BACSTE_02578 [Bacteroides stercoris ATCC 43183] gi|167698310|gb|EDS14889.1| hypothetical protein BACSTE_02578 [Bacteroides stercoris ATCC 43183] Length = 372 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 156/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + D + + + Sbjct: 1 MITIEQLKDIKERTEALNRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y++ K +L + + + + LE + Sbjct: 61 QWISGYNEVKVLADELQLAFDFYKDELVTEEEVDEAYAKASAAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETHGYKATISNLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+V+I I D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNIEQARISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID + L Sbjct: 354 KIDGFVKAYLME 365 >gi|262395207|ref|YP_003287061.1| peptide chain release factor 2 [Vibrio sp. Ex25] gi|262338801|gb|ACY52596.1| peptide chain release factor 2 [Vibrio sp. Ex25] Length = 260 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 100/260 (38%), Positives = 151/260 (58%), Gaps = 7/260 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E ++ + + D C ++++AG+GG+EA + L RMY R+A + +K EV Sbjct: 1 MEEKLEKLEFRRMFSGDHDSSDCYIDLQAGSGGTEAQDWTNMLLRMYLRWAEAKGFKAEV 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE Sbjct: 61 IEVSEGEVAGLKSATVRISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPE 120 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E D+DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 121 IDENIDIDINPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGIEN 237 Query: 326 YKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 238 RNTQAVLDGDLDKFIEASLK 257 >gi|312375908|gb|EFR23156.1| hypothetical protein AND_13424 [Anopheles darlingi] Length = 406 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 125/318 (39%), Positives = 183/318 (57%), Gaps = 5/318 (1%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 +S ++ + L + D D I+ L + R + +L Sbjct: 83 LSNVVEMYEQRKIVVENLGSLKEL-KDDKDDEMIQLLKEEREAYSNILGRLDREIMEGIL 141 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + ++ S I+E+ AG GG EA LF +LF MY Y + W+VE+L + D GG + Sbjct: 142 SMDEDEEYGSLIMEVTAGVGGQEAMLFARELFDMYCGYVEHKDWEVEMLQTEGTDLGGIR 201 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED 221 I+G V+ +K+E GVHRVQR+PATE SGR+HTS TVA++P + +VD+ +D Sbjct: 202 HATIIINGTDVYRCLKYEGGVHRVQRIPATEKSGRIHTSTVTVAIIPRPDDFEVDLKEKD 261 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 ++I+T RASG+GGQHVNTTDSAVRI H+PTGI V +E+SQ +NR A + L A+L Sbjct: 262 LKIETKRASGAGGQHVNTTDSAVRIVHLPTGIAVECQTERSQVKNREIAKQKLVAKLMQQ 321 Query: 281 ERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YID 337 E + A +K Q+G R+E+IRTYNF+Q RITDHRI T++ L+ L+G +D Sbjct: 322 ELEARFASTQALKKSQVGQSLRNEKIRTYNFNQDRITDHRIEGGTVHNLKGFLEGGQQLD 381 Query: 338 DIINPLLTAHQAKMIGSA 355 D+I+ L + + K + Sbjct: 382 DMIDKLHRSERRKQLLEL 399 >gi|221134749|ref|ZP_03561052.1| Protein chain release factor B, RF-2 [Glaciecola sp. HTCC2999] Length = 248 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 92/248 (37%), Positives = 136/248 (54%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D C L+I++G+GG+EA + L RMY R+ +K E++ SD D G K Sbjct: 1 MFAKPNDGNDCYLDIQSGSGGTEAQDWANMLLRMYLRWGEENGFKTELIEVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 G F ++ E+GVHR+ R ++ R HTS A+ + PE + Sbjct: 61 SATIRFGGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFASAFIYPEINDDIDIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT RASG+GGQHVN TDSAVRITH+PT I+V +++SQH+N+ +A K L+A+LY+ Sbjct: 121 DLRIDTYRASGAGGQHVNRTDSAVRITHLPTNIVVQCQNDRSQHKNKDQAFKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ E+ + K IG G +IR+Y RI D R + + VL G ++ Sbjct: 181 YELQKQNEEKQAMEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGNLN 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|226324356|ref|ZP_03799874.1| hypothetical protein COPCOM_02137 [Coprococcus comes ATCC 27758] gi|225206804|gb|EEG89158.1| hypothetical protein COPCOM_02137 [Coprococcus comes ATCC 27758] Length = 313 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 160/312 (51%), Gaps = 6/312 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + + + +D++ +I + + + +I+ + E ++ Sbjct: 1 MKELRKMQDCVKEVRDLESSYEDINALIELTEEEEDREMIKEIQREIAKFEKEF--EDLR 58 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + I+ + AG GG+++ + L+RMY RYA + +++ VL D D Sbjct: 59 IRTLLSGEYDSCNAIVTLHAGAGGTDSCDWANMLYRMYTRYAQSKGFQITVLDYQDGDIT 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDI 217 G K I ++G + + E GVHR+ R+ ++G+ TS A+ V +ID+++ Sbjct: 119 GLKGITFEVTGDNAYGYFQSEKGVHRLVRISPFNSAGKRQTSFASCDVIPDIEDDIDIEL 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D+RIDT R+SG+GGQH+N T SAVRITH+PTGI+V +E+SQ N+ +AM++L+A+ Sbjct: 179 NDDDLRIDTYRSSGAGGQHINKTSSAVRITHLPTGIVVQCQNERSQLFNKDKAMQMLKAK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY 335 LY ++++ + S R ++ + +IR+Y + DHR + VL G Sbjct: 239 LYLLKKQEQEEKVSGIR-GEVQDINFGSQIRSYILHPYNLVKDHRTGEETGNVSAVLDGE 297 Query: 336 IDDIINPLLTAH 347 +D IN L Sbjct: 298 LDPFINAYLKQR 309 >gi|85715460|ref|ZP_01046441.1| peptide chain release factor 2 [Nitrobacter sp. Nb-311A] gi|85697655|gb|EAQ35531.1| peptide chain release factor 2 [Nitrobacter sp. Nb-311A] Length = 322 Score = 192 bits (488), Expect = 6e-47, Method: Composition-based stats. Identities = 100/317 (31%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ +++ + + N + I + ++ R Sbjct: 1 MQERTSLEDSLTGIGKVERELEDQIGMIELGEAENDQAVITESENALKTLRKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A R +KVE L + Sbjct: 57 -RELEALLSGEADRFDTYLEVHAGAGGTESQDWAQMLLRMYARWAEKRGFKVEYLEETPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++VA+ P I Sbjct: 116 EEAGIKSATVQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVAIFPVVDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|301613862|ref|XP_002936423.1| PREDICTED: peptide chain release factor 1-like, mitochondrial [Xenopus (Silurana) tropicalis] Length = 420 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 117/241 (48%), Positives = 166/241 (68%), Gaps = 3/241 (1%) Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 +D I+E+ AG GG EA LF ++F MY+ YA + W ++L ++ GG + Sbjct: 156 ESEDNDLIMEVTAGVGGQEAMLFTAEMFDMYQHYAVHKNWSFDLLEYFSSELGGLRHATV 215 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 +I G+ + +KFE GVHRVQRVP TE GR+HTS TVA+LP+ +EI++ I +D+RI+ Sbjct: 216 SIGGQDAYKCLKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPSEINLVINPKDLRIE 275 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T RASG+GGQHVNTTDSAVRI HIPTG++ E+SQ +N+ +AM+VLRA+LY ++ + Sbjct: 276 TKRASGAGGQHVNTTDSAVRIVHIPTGVVSECQQERSQIKNKEKAMQVLRAKLYTMKLEE 335 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINP 342 ++R RK+QIG+ RSE+IRTYN+ Q R+TDHRI +L+ +E L G +DD+I Sbjct: 336 ETSKRYNARKIQIGTRGRSEKIRTYNYPQDRVTDHRIGKSLHNIEGFLFGEELLDDLIQS 395 Query: 343 L 343 L Sbjct: 396 L 396 >gi|218131879|ref|ZP_03460683.1| hypothetical protein BACEGG_03501 [Bacteroides eggerthii DSM 20697] gi|317474512|ref|ZP_07933786.1| peptide chain release factor 2 [Bacteroides eggerthii 1_2_48FAA] gi|217986182|gb|EEC52521.1| hypothetical protein BACEGG_03501 [Bacteroides eggerthii DSM 20697] gi|316909193|gb|EFV30873.1| peptide chain release factor 2 [Bacteroides eggerthii 1_2_48FAA] Length = 372 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 94/372 (25%), Positives = 158/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + D + + + Sbjct: 1 MITIEQLKDIKERTEALNRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y++ + +L + + + + LE + Sbjct: 61 QWISGYNEVRILADELQLAFDFYKDELVTEEEVDEAYAKASAAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETHGYKATIANLQEGDEAGIKACTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I+G + +K E+GVHR+ RV A G+ TS A+V V P I+V+I + +I D Sbjct: 177 IAGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNINVANISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID + L Sbjct: 354 KIDGFVKAYLME 365 >gi|194377328|dbj|BAG57612.1| unnamed protein product [Homo sapiens] Length = 468 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 125/334 (37%), Positives = 198/334 (59%), Gaps = 9/334 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 89 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 148 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 149 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 208 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG GV+ +K+E Sbjct: 209 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEG 268 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 269 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 328 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 329 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 388 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 +G+ +SERIRTYNF+Q R++DHRI + ++ Sbjct: 389 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKA 422 >gi|291568918|dbj|BAI91190.1| peptide chain release factor 2 [Arthrospira platensis NIES-39] Length = 316 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 89/315 (28%), Positives = 148/315 (46%), Gaps = 10/315 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + ++ + + + ++ + ++ + +S ++ V R Sbjct: 1 MSDLKSVLQQQQDWRKTLEDTGAIAELLELEDDESLRQEAESNVVHLGRDIDRW-----E 55 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D +L I AG GG++A + L RMY R+ + +KV + S+ D+ Sbjct: 56 LQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEA 115 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVD 216 G K + G + +K E G HR+ R+ A+G+ TS A V ++P E I++D Sbjct: 116 GIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLD 175 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 IP +D+ I T RA G GGQ+VN ++AVRI HIPTGI V + E+SQ QNR +AM +L+A Sbjct: 176 IPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKA 235 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQG 334 +L V +++ A + R + +IR Y F + + D R + V+ G Sbjct: 236 KLLVVAQEQRAQAIAEIRGDLVE-AAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNG 294 Query: 335 YIDDIINPLLTAHQA 349 +D I L Sbjct: 295 ELDGFIQAYLRQENQ 309 >gi|189464495|ref|ZP_03013280.1| hypothetical protein BACINT_00837 [Bacteroides intestinalis DSM 17393] gi|189438285|gb|EDV07270.1| hypothetical protein BACINT_00837 [Bacteroides intestinalis DSM 17393] Length = 371 Score = 192 bits (488), Expect = 7e-47, Method: Composition-based stats. Identities = 99/372 (26%), Positives = 162/372 (43%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D + + + Sbjct: 1 MITIEQLKDVKERTEALYRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I+ Y++ K ++L + + + I ELE + Sbjct: 61 QWIAGYNEIKTLSEELQLAFDFYKDELVTEEEIDEAYAKASTAIDELELKNMLRDEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKAVISNLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+V+I + +I D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNINVANISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|154310299|ref|XP_001554481.1| hypothetical protein BC1G_07069 [Botryotinia fuckeliana B05.10] gi|150851401|gb|EDN26594.1| hypothetical protein BC1G_07069 [Botryotinia fuckeliana B05.10] Length = 402 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 125/373 (33%), Positives = 192/373 (51%), Gaps = 32/373 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L + SE+ K+ + + + + +++ K+ +L ++ D Sbjct: 23 NLAAEHDRLSSETSETFD----AKIAKRIGELQDVAVALRKWEETKESLSELDDLLKDSA 78 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+R+LA ++ + EL + L PK + C+LEIR G GG EAA+F Sbjct: 79 TDEELRELAVEDLTTTTAHLEELSRNLTTSLTPKHPFAELPCLLEIRPGAGGGEAAIFAA 138 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 DL RMY Y A ++++ ++ D G E+V I G + ++ E+GVHR Sbjct: 139 DLLRMYRAYCARKRFRSTIIKYETTDGEGAGSDAPISEVVLEIESSGSYDSLRGEAGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLP-----------------EAAEIDVDIPLEDIRIDTM 227 VQRVPATE GR HTSA +V VLP D + D+R D M Sbjct: 199 VQRVPATEKQGRTHTSAVSVMVLPSFPTTGQEGQEYWEADLNDPNSDYYVNPADVRTDVM 258 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVNTTDSAVR+TH+PT +V+ +SQ QNR +A +VLR+RL +R+ Sbjct: 259 RARGAGGQHVNTTDSAVRLTHVPTNTVVSMQEGRSQLQNRQKAWQVLRSRLAAAKREARE 318 Query: 287 NERSANRKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 + R+ IG R ++IRTYN+ Q R+TDHR L+++ L+ V++G ++ II+ Sbjct: 319 EQLINLRRSVIGVAKMGRGDKIRTYNWGQQRVTDHRSGLSVHNLDDVMEGGDELEKIIDS 378 Query: 343 LLTAHQAKMIGSA 355 + + I Sbjct: 379 VKAWFSEQEILGL 391 >gi|114651379|ref|XP_001150035.1| PREDICTED: mitochondrial translational release factor 1 isoform 1 [Pan troglodytes] Length = 455 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 125/334 (37%), Positives = 198/334 (59%), Gaps = 9/334 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG GV+ +K+E Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEG 255 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+RIDT RA G+GGQHV Sbjct: 256 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHV 315 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N TDSAVR+ HIPTG++V E+SQ +N+ A +VLRARLY ++ ++ + RKLQ Sbjct: 316 NKTDSAVRLVHIPTGLVVECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQ 375 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 +G+ +SERIRTYNF+Q R++DHRI + ++ Sbjct: 376 VGTRAQSERIRTYNFTQDRVSDHRIAYEVRDIKA 409 >gi|167517235|ref|XP_001742958.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778057|gb|EDQ91672.1| predicted protein [Monosiga brevicollis MX1] Length = 416 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 149/383 (38%), Positives = 228/383 (59%), Gaps = 34/383 (8%) Query: 6 HKQICDLKNRFAEIELRMS----ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + + + A + R++ E+ + + ++ A ++ + I D+ + + Sbjct: 20 QQHLQSIVDGHATLSERLTQLTTENGAPNEIASISRRLAKVAALTEVIHARDKALEAIAE 79 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L ++ DSE+R+LA ++ + +++ELE E+ L+P+DT D+ S ++E+RAGTG Sbjct: 80 LQDMLKTEE-DSELRELAASDLAQEQTQLQELEQELLQALVPEDTADEASAVVELRAGTG 138 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EAALF DL MY+ A ++W +VL DDGG +E +ISG GVF +KFESG Sbjct: 139 GREAALFAHDLKLMYQGLAQQQRWSFKVLDEQATDDGGLREASLSISGSGVFGMLKFESG 198 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P TE +GR+HTS ATVAVLPE +++V++ +DI ++T RA G+GGQHVNTTD Sbjct: 199 VHRVQRIPTTETAGRIHTSTATVAVLPEPTDVEVEVLDKDIHVETYRAGGAGGQHVNTTD 258 Query: 242 SAVRITHIPTGIMV-TSSEKSQH-------------------------QNRLRAMKVLRA 275 SAVR+TH+PTG +V +E+SQH QN+ AMKVL+A Sbjct: 259 SAVRLTHLPTGTVVACQTERSQHKLEHIVSTRVAIDQCVLFNRVHHLVQNKAAAMKVLKA 318 Query: 276 RLYDVERKRMANERSANRKLQIGS--GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 R++ R + ER A R+ QI + G+RS+RIRTYN Q R+TDHRI +L +E +L+ Sbjct: 319 RIFAQVRAKQEEERRAARREQISTTPGERSDRIRTYNMPQDRVTDHRIKASLNNVETLLK 378 Query: 334 G-YIDDIINPLLTAHQAKMIGSA 355 G + ++I L ++ + Sbjct: 379 GISLPELIVQLQQFDNSQRLADL 401 >gi|113461617|ref|YP_719686.1| peptide chain release factor 2 [Haemophilus somnus 129PT] gi|112823660|gb|ABI25749.1| bacterial peptide chain release factor 2 (bRF-2) [Haemophilus somnus 129PT] Length = 260 Score = 192 bits (487), Expect = 7e-47, Method: Composition-based stats. Identities = 94/261 (36%), Positives = 144/261 (55%), Gaps = 7/261 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + + + + + D+ C ++++AG+GG+EA + L RMY R+A + +K E+ Sbjct: 1 MEKKLAALEFRRMFSGQHDNCDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTEL 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S D G K I+G F ++ E+G+HR+ R +++ R HTS A V PE Sbjct: 61 VEVSSGDVAGLKSATIRIAGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPE 120 Query: 210 AAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 + D+RID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ Sbjct: 121 IDDDIEIEINPADLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK L+A+LY++E + ++ + K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLKAKLYEMEIMKKNADKQAMEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVEN 237 Query: 326 YKLEYVLQGYIDDIINPLLTA 346 + VL G +D I L A Sbjct: 238 RNTQAVLDGDLDRFIEASLKA 258 >gi|89898648|ref|YP_515758.1| peptide chain release factor 2 [Chlamydophila felis Fe/C-56] gi|89332020|dbj|BAE81613.1| hypothetical protein [Chlamydophila felis Fe/C-56] Length = 315 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 110/319 (34%), Positives = 162/319 (50%), Gaps = 14/319 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 ++E A++ +S + K ++S++ + ++ + Sbjct: 1 MSERIASLKRQVSDYQNFKSKVDNLT-----FFLNDSEASSDPEFREDLEKEFSICENIL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 +E L D SC L I AG GG+E+ +V LFRMY R+A+ +WKVEV+ D Sbjct: 56 SEWEIQRLLSGEVDKNSCFLTINAGAGGTESCDWVEMLFRMYCRWASEHRWKVEVIDRQD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 D G K + SG + K E GVHR+ R+ ++ + HTS A+V V P EI Sbjct: 116 GDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVRISPFNSNAKRHTSFASVDVYPEIDDEI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+RIDT R+SG+GGQHVN TDSAVRITHIPTGI V +E+SQ QNR MK+ Sbjct: 176 EIDIQPNDLRIDTFRSSGAGGQHVNVTDSAVRITHIPTGITVSCQNERSQLQNRESCMKM 235 Query: 273 LRARLYDVERKRMANERSANRKL--QIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE 329 LRAR+Y + ++ RK +I G +IR Y F + D R ++ Sbjct: 236 LRARMYQQILQERLEKQLLERKNKKEIAWG---SQIRNYVFQPYTLVKDVRTGYETGNVQ 292 Query: 330 YVLQGY-IDDIINPLLTAH 347 ++ G +DD + L + Sbjct: 293 AMMDGELLDDFVKAYLAEY 311 >gi|90417703|ref|ZP_01225615.1| peptide chain release factor 2 [Aurantimonas manganoxydans SI85-9A1] gi|90337375|gb|EAS51026.1| peptide chain release factor 2 [Aurantimonas manganoxydans SI85-9A1] Length = 321 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I ++ +Q Q+ +L + + +++ + + Sbjct: 1 MRERQFLDTAIGAVNRLNQSLQDNIELIAMGEEEKDAEIVKEAEAAIREIKSEADK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D +E+ +G GG+E+ + L RMY R+A K+KVEVL Sbjct: 57 -RQIETLLSGEADSNDTYVEVHSGAGGTESQDWAAMLQRMYMRWAERAKFKVEVLEEHSG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K I G + MK ESGVHR+ R+ ++ R HTS A+V V P ID Sbjct: 116 EEAGIKSATLLIKGHNAYGWMKTESGVHRLVRISPYDSQARRHTSFASVWVYPVVDDSID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +D+ D+RIDT RASG+GGQHVNTTDSAVRITH+ TGI+V +E+SQH+NR A +L Sbjct: 176 IDVNESDVRIDTYRASGAGGQHVNTTDSAVRITHLETGIVVQCQAERSQHKNRATAWNML 235 Query: 274 RARLYDVE--RKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E R+ A A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEAELERRENAANAEAASKTDIGWG---HQIRSYVLQPYQMVKDLRTGIESTSPQD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D + L Sbjct: 293 VLDGGLDPFMEGALAHR 309 >gi|319898909|ref|YP_004159002.1| peptide chain release factor RF-2 [Bartonella clarridgeiae 73] gi|319402873|emb|CBI76424.1| peptide chain release factor RF-2 [Bartonella clarridgeiae 73] Length = 333 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 112/337 (33%), Positives = 165/337 (48%), Gaps = 16/337 (4%) Query: 29 VDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 + K E + ++ ++ Q +E +L + + N I + + Sbjct: 3 WNNAQKAQDVMRERQNLENSMNSTQLFTQTLEECIELIAMGEEENDMGIIAEAENTILQL 62 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKW 145 ++ + +L D LEI AG GG E+ + L RMY R+A K Sbjct: 63 KKEIDK-----RRIEMLLSGEADSNDTYLEIHAGAGGIESQDWASMLLRMYSRWAEQNKM 117 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KVEVL + D ++ G K I G + +K ESGVHR+ R+ +++ R HTS A++ Sbjct: 118 KVEVLETHDGEEAGIKSATLLIKGHNAYGLLKTESGVHRLVRISPYDSNARRHTSFASIW 177 Query: 206 VLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQH 263 + P I+VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH Sbjct: 178 IYPVVNENIEVDLSDADVRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQH 237 Query: 264 QNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHR 320 +NR A +LRARLY+ E K+ E + K +IG G +IR+Y + + D R Sbjct: 238 KNRATAWSMLRARLYEEELKKREEETNAVEASKTEIGWG---HQIRSYVLQPYQLVKDLR 294 Query: 321 INLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + VL G +D I L + Sbjct: 295 TGVENTDPQTVLNGDLDIFIEAALAQRVQGKKQKLED 331 >gi|257791746|ref|YP_003182352.1| peptide chain release factor 2 [Eggerthella lenta DSM 2243] gi|317487783|ref|ZP_07946376.1| peptide chain release factor 2 [Eggerthella sp. 1_3_56FAA] gi|325831767|ref|ZP_08164956.1| peptide chain release factor 2 [Eggerthella sp. HGA1] gi|257475643|gb|ACV55963.1| peptide chain release factor 2 [Eggerthella lenta DSM 2243] gi|316913058|gb|EFV34574.1| peptide chain release factor 2 [Eggerthella sp. 1_3_56FAA] gi|325486436|gb|EGC88886.1| peptide chain release factor 2 [Eggerthella sp. HGA1] Length = 364 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 109/347 (31%), Positives = 165/347 (47%), Gaps = 18/347 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + A+++ +++ D S + I+ YD+ D Sbjct: 25 IDERAAELAKLDEEIAQPGFWDDASHAQSVSKQASVLRDTIAEYDEAAALLDDARAAFDL 84 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + A + +++ + LE + D IL + G+GG EA + Sbjct: 85 ASEDELFAEEASAALDKLDELLDALE----ISSWFSERFDGGDAILTVNPGSGGLEAQDW 140 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L+RMY RYA + WKV VL + G + I GR F +K ESGVHR+ R+ Sbjct: 141 TDMLYRMYVRYAEKKDWKVTVLDVVPGEGIGLDKATIQIEGRNAFGMLKSESGVHRLVRI 200 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 T+ R HT+ A V VLP +I+VD+ D+R+D R+SG GGQ VNTTDSAVR+T Sbjct: 201 SPTDDKKRRHTTFAGVEVLPVLPDDIEVDLNPADVRVDVYRSSGPGGQCVNTTDSAVRLT 260 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR---- 302 HIPT I+V +EKSQ QN+ A +VL+A+LY+ E ++ E + R GDR Sbjct: 261 HIPTNIVVTCQNEKSQLQNKEAAFRVLKAKLYEREEQKRQEELAELR------GDRMDNT 314 Query: 303 -SERIRTYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR Y + + D R + ++ VL G +D+ + Sbjct: 315 FGSQIRNYVLYPYQMVKDVRSGIETGNVDAVLDGELDEFVIGYHRWR 361 >gi|86750123|ref|YP_486619.1| peptide chain release factor 2 [Rhodopseudomonas palustris HaA2] gi|86573151|gb|ABD07708.1| bacterial peptide chain release factor 2 (bRF-2) [Rhodopseudomonas palustris HaA2] Length = 322 Score = 192 bits (487), Expect = 8e-47, Method: Composition-based stats. Identities = 96/317 (30%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ + ++ + + +R+ ++ R Sbjct: 1 MQERTSLEDSLTGIGKVERELSDNIEMIELGEAEGDEGVVREAEAALKALKKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +KVE L S+ Sbjct: 57 -RELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLRMYTRWAEKHGFKVEYLEESEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQIFPVIDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+TH+PTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHVPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|260914424|ref|ZP_05920893.1| peptide chain release factor RF2 [Pasteurella dagmatis ATCC 43325] gi|260631525|gb|EEX49707.1| peptide chain release factor RF2 [Pasteurella dagmatis ATCC 43325] Length = 248 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 141/249 (56%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 +SG F ++ E+G+HR+ R +++ R HTS + V PE + Sbjct: 61 SATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIP+GI+V +++SQH+N+ + MK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNDRSQHKNKDQCMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 MELQKKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 RFIEASLKA 246 >gi|198274326|ref|ZP_03206858.1| hypothetical protein BACPLE_00470 [Bacteroides plebeius DSM 17135] gi|198272816|gb|EDY97085.1| hypothetical protein BACPLE_00470 [Bacteroides plebeius DSM 17135] Length = 371 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 93/372 (25%), Positives = 157/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + E ++ D + + + Sbjct: 1 MITIEQLKDVKERTEALYRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKALQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I+ Y + K +L + + + + ELE + Sbjct: 61 QWITGYQEVKTLADELQLSFDFYKDELVTEEEVDEAYSKAISAVEELELKNMLRSEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ G K + Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYMRWAESNGYKLSVANLQEGDEAGIKTVTMN 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + + D Sbjct: 177 IEGSYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVTVEPARLSWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRAR 276 T R+ G+GGQ+VN +S VR+ + ++ + + Q +N+ AM+ LR+ Sbjct: 237 TFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNKENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|195031191|ref|XP_001988305.1| GH11092 [Drosophila grimshawi] gi|193904305|gb|EDW03172.1| GH11092 [Drosophila grimshawi] Length = 395 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 118/354 (33%), Positives = 194/354 (54%), Gaps = 12/354 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ + + R++ + + Y +L+ + P+++ + + ++ + + Sbjct: 35 LESLRQEYYAL--RVNAAGNSSLYERLSR----LDPVVNSLEKHRALQRNITPKQELAAE 88 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + + + ++ E+ + LL D D + I E++AG GG EA LF Sbjct: 89 KDEDMRAL-MQEENNVYADLLRKQEEDMLQELLTLADNVDYPALIFEVKAGAGGQEAMLF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L+ MY Y W+ E + D GG + +S ++ +++E+GVHRVQRV Sbjct: 148 AQELYDMYTSYFEHMGWEYEEFAYETTDIGGLRHANLLVSDPEAYNWLRYEAGVHRVQRV 207 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P TE SGR+HTS A++ V+P A++ V + D++I+T RASG+GGQHVNTTDSAVRI H Sbjct: 208 PTTEKSGRMHTSTASITVIPRPADVHVHLTDRDLKIETKRASGAGGQHVNTTDSAVRIVH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG+ V SE+SQ +NR A+K L+A+L + + + A RK Q G+ +R+E+IR Sbjct: 268 LPTGLAVECQSERSQLKNRELALKRLQAKLMQQQLESAEASKQATRKSQQGNLNRNEKIR 327 Query: 308 TYNFSQGRITDHRI--NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 TYNF Q R+TDHR+ TL+ L L G + +I L + + E Sbjct: 328 TYNFMQDRVTDHRVQQGGTLHNLSGFLAGGQQLSVLIERLQLEQRKSKLVELLE 381 >gi|92117370|ref|YP_577099.1| peptide chain release factor 2 [Nitrobacter hamburgensis X14] gi|91800264|gb|ABE62639.1| bacterial peptide chain release factor 2 (bRF-2) [Nitrobacter hamburgensis X14] Length = 322 Score = 192 bits (487), Expect = 9e-47, Method: Composition-based stats. Identities = 98/316 (31%), Positives = 161/316 (50%), Gaps = 13/316 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ +++ + + N + + D ++ R Sbjct: 1 MQERTSLEDSLTGIGKVERELEDQIGMIELGEAENDQAIVNDSENALKNLKKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D + LE+ AG GG+E+ + L RMY R+A R +K+E L + Sbjct: 57 -RELEALLSGEADRFNTYLEVHAGAGGTESQDWASMLLRMYARWAEKRGFKIEYLEETPG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K +SG + +K E+GVHR+ R+ +++ R HTS ++VA+ P I Sbjct: 116 EEAGIKSATIQVSGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVAIFPVVDDSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIKESDVRTDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY +E K+ K IG G +IR+Y + + D R + Sbjct: 236 RARLYQIELKKREEQAAADQAAKTDIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTSG 292 Query: 331 VLQGYIDDIINPLLTA 346 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQ 308 >gi|73989052|ref|XP_542584.2| PREDICTED: similar to mitochondrial translational release factor 1 isoform 1 [Canis familiaris] Length = 456 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 130/372 (34%), Positives = 207/372 (55%), Gaps = 23/372 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + + L +A ++P+ + + +Q ++L + Sbjct: 75 QKYMEDLNKEYRTLDQCLQHLSVNEGDRKSLNRRHAELAPLAAIYQEIQEAEQAIEELDS 134 Query: 65 VIGD--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + + ++++LA E I ++I L +E+ L+PK+ D I+E+ +G T Sbjct: 135 MCKSLSKQDEKQLQELALEERQTIAEKINVLYSELFQSLVPKEKYDKNDVIIEVTSGRTT 194 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND------------DGGYKEIVATIS 168 GG F ++F MY+ Y++ + WK E+L+ + D GG A IS Sbjct: 195 GGDICQQFTREIFDMYQNYSSYKNWKFELLNYTPADYGSDLKPCGFVIVGGLHHAAARIS 254 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRID 225 G V+ +K+E GVHRVQR+P S R+ HT +V VLP+ E+DV + +D+RID Sbjct: 255 GDNVYKHLKYEGGVHRVQRIPEVGLSARMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRID 314 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T RA G+GGQHVNTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ Sbjct: 315 TFRAKGAGGQHVNTTDSAVRLVHIPTGLVVECQQERSQIKNKEIALRVLRARLYQQIIEK 374 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINP 342 ++ + RKLQ+G+ +SERIRTYNF+Q R+TDHRI + ++ L G +D +I Sbjct: 375 DKCQQQSTRKLQVGTRAQSERIRTYNFTQDRVTDHRIAYEVRGIKEFLCGEKCLDQLIQR 434 Query: 343 LLTAHQAKMIGS 354 LL + + I Sbjct: 435 LLHSADEEAITE 446 >gi|156973278|ref|YP_001444185.1| hypothetical protein VIBHAR_00959 [Vibrio harveyi ATCC BAA-1116] gi|156524872|gb|ABU69958.1| hypothetical protein VIBHAR_00959 [Vibrio harveyi ATCC BAA-1116] Length = 260 Score = 191 bits (486), Expect = 9e-47, Method: Composition-based stats. Identities = 99/260 (38%), Positives = 151/260 (58%), Gaps = 7/260 (2%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E ++ + + D C ++++AG+GG+EA + + RMY R+A + +K EV Sbjct: 1 MEEKLEQLEFRRMFSGDHDSSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFKSEV 60 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + PE Sbjct: 61 IEVSEGEVAGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFIYPE 120 Query: 210 AAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E D+DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 121 IDENIDIDINPSDLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNKD 180 Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 181 QAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVEN 237 Query: 326 YKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 238 RNTQAVLDGDLDKFIGASLK 257 >gi|158300562|ref|XP_320450.4| AGAP012078-PA [Anopheles gambiae str. PEST] gi|157013219|gb|EAA00316.4| AGAP012078-PA [Anopheles gambiae str. PEST] Length = 760 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 124/295 (42%), Positives = 177/295 (60%), Gaps = 4/295 (1%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + D D ++ L + R +N +L D +D S I+E+ AG G Sbjct: 456 LQRELKDDKDDEMVQLLKEEREAYGSILFRLDSEILNGILSMDDEEDYGSLIMEVTAGVG 515 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF +LF MY Y + W+VE+L + + D GG + ISG + +K E G Sbjct: 516 GQEAMLFARELFDMYCGYVEYKGWEVEMLQTENTDIGGTRHATTVISGPDAYRYLKHEGG 575 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+PATE SGR+HTS TV+++P + V++ +D++I+T RASG+GGQHVNTTD Sbjct: 576 VHRVQRIPATEKSGRIHTSTVTVSIIPRPDDFQVELKEKDLKIETKRASGAGGQHVNTTD 635 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H+PTGI V +E+SQ +NR A + L A+L +E + + A +K Q+G Sbjct: 636 SAVRIVHLPTGIAVECQTERSQQKNREIAKQKLTAKLMQIELEARFSSTQALKKSQVGQS 695 Query: 301 DRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 R+E+IRTYNF+Q RITDHRI T + L+ L+G +DD+I L + + K + Sbjct: 696 LRNEKIRTYNFNQDRITDHRIEGGTAHNLKGFLEGGEQLDDMIEKLRRSQRRKQL 750 >gi|13959455|sp|P57511|RF2_BUCAI RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 365 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 98/342 (28%), Positives = 178/342 (52%), Gaps = 15/342 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAY---IKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K+R EI+L +S + KL +E ++ II I+ ++ +E + Sbjct: 28 NKKKSRVLEIDLELSSPKTWTEQISIKKLNKEKYLLNSIIQNINEIEENIKEVVIFLELA 87 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + ++ ++I + ++ + + +D C ++I++G+GG++A Sbjct: 88 IETQDNLVFKESL-----LEIQKIEQEIKKLEFYRMFSKKNDHYDCYIDIQSGSGGTDAQ 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY R+A + + E++ S + G K +SG F + E+G+HR+ Sbjct: 143 DWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIKSSTIKVSGEYAFGWFRTETGIHRLI 202 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R ++ R HTS +++ + P+ E D++I D+RID RASG+GGQHVN T+SAVR Sbjct: 203 RKSPFDSGKRRHTSFSSIFIYPDINEKIDININYSDLRIDVYRASGAGGQHVNRTESAVR 262 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 ITH+PT I+ + +SQH+N+ +AMK ++++LY+++ ++ E+ K I G+ Sbjct: 263 ITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYEIQMRKKQEEKQKIEQNKSDITWGN- 321 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +IR+Y +I D R + ++ VL G +DD I L Sbjct: 322 --QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLDDFIEQSL 361 >gi|319404230|emb|CBI77823.1| peptide chain release factor RF-2 [Bartonella rochalimae ATCC BAA-1498] Length = 317 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 108/318 (33%), Positives = 161/318 (50%), Gaps = 13/318 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + ++ ++ Q +E +L + + N I + + + Sbjct: 1 MMRERQNLEDSMNSTQLFTQMLEECIELIAMGEEENDVEIITEAENTIRQLKSEIDK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D LE+ AG GG+E+ + L RMY R+A K KVE+L + D Sbjct: 58 --KQIETLLSGEADSNDTYLEVHAGAGGTESQDWASMLLRMYTRWAEQHKMKVEILETHD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I Sbjct: 116 GEEAGIKSATILVKGYNAYGLLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVVDENI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+N+ A + Sbjct: 176 EVDLSESDVRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQHKNKATAWSM 235 Query: 273 LRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E K+ +A K +IG G +IR+Y + + D R + + Sbjct: 236 LRARLYEEELKKREEATNAVEAFKTEIGWG---HQIRSYVLQPYQLVKDLRTGVENADPQ 292 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +D I L Sbjct: 293 TVLNGDLDTFIEAALAQR 310 >gi|329956010|ref|ZP_08296781.1| putative peptide chain release factor 2 [Bacteroides clarus YIT 12056] gi|328524769|gb|EGF51823.1| putative peptide chain release factor 2 [Bacteroides clarus YIT 12056] Length = 372 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 95/372 (25%), Positives = 156/372 (41%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + D + + + Sbjct: 1 MITIEQLKDIKERTEALNRYLDIEGKKIQVEEEQLRTQAPGFWDDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y++ K +L + + + + LE + Sbjct: 61 QWISGYNEVKVMADELQLAFDFYKDELVTEEEVDEAYAKASAAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETHGYKATIANLQEGDEAGIKACTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 I+G + +K E+GVHR+ RV A G+ TS A+V V P I+V+I I D Sbjct: 177 IAGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNIEQARISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID + L Sbjct: 354 KIDGFVKAYLME 365 >gi|303233066|ref|ZP_07319741.1| peptide chain release factor 2 [Atopobium vaginae PB189-T1-4] gi|302480841|gb|EFL43926.1| peptide chain release factor 2 [Atopobium vaginae PB189-T1-4] Length = 420 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 168/396 (42%), Gaps = 54/396 (13%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ ++ + AE+E ++ + ++ A ++ + + DL Sbjct: 24 QLDTMQTKIAELEAECAKEDFWGDPARASKTMATLTNLKQTQATMRDAHALLDDLVVAYE 83 Query: 68 DHNSDSEI-------------------------------------------------RDL 78 + + + Sbjct: 84 FALDEMQNAALPVSGLDISHPHDAAASEATTSGEARSISHIPAASDAASPADTAAQAQSD 143 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E K + L +E+ D D I+ I+ G GG EA + L +MY + Sbjct: 144 MMREAQHTYKTLTGLLDELELNRWFCDPYDQGDAIVTIKPGQGGLEAQDWCAMLLKMYCK 203 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 Y + W+V + + G T+ G + +K E+GVHR+ R+ T+A R Sbjct: 204 YCERKSWRVTINDCPQAEVIGIDRATFTVHGVRAYGMLKAEAGVHRLVRISPTDAKHRRQ 263 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 T+ A V V+P E DV+I +D+R+D ASG GGQ VNTTDSAVR+TH+P+GI+V Sbjct: 264 TTFAGVEVIPVLPEETDVEINPQDVRVDVFHASGPGGQGVNTTDSAVRLTHMPSGIVVSC 323 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN-FSQGR 315 +E+SQ QN+ AM++L+ARLY+++R++ A + + K + +IR Y + Sbjct: 324 QNERSQLQNKAAAMEILKARLYELQRQQRATQLNDL-KGLTTTISWGNQIRNYILYPFQL 382 Query: 316 ITDHRINLTLYKLEYVL-QGYIDDIINPLLTAHQAK 350 + D R + ++ VL +G +D I L Q + Sbjct: 383 VKDTRTQVETGNVDAVLQEGNLDPFIIAYLRWKQEQ 418 >gi|51245661|ref|YP_065545.1| peptide chain release factor 2 [Desulfotalea psychrophila LSv54] gi|50876698|emb|CAG36538.1| probable peptide chain release factor 2 [Desulfotalea psychrophila LSv54] Length = 285 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 101/288 (35%), Positives = 156/288 (54%), Gaps = 9/288 (3%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L + + +++A I + D + I+ I AG G Sbjct: 2 LLEMAAEEGDQEIEQEIALKLGSFANALAA-----IELECMFIGEHDSCNAIISIHAGAG 56 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+EA + L RMY R+A K+K E+L D+ G K I I G+ + ++ E G Sbjct: 57 GTEAQDWTDILLRMYLRWAERHKFKTEILDLLPGDEAGTKSITILIKGQWAYGYLRSELG 116 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ + SGR HTS A+V V+PE +DVDI +D+R+DT RASG+GGQHVN T Sbjct: 117 IHRLVRISPFDTSGRRHTSFASVMVMPELDNTVDVDIDEKDLRVDTYRASGAGGQHVNKT 176 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSA+R+TH+PTG++V +E+SQH+N+ AMK+L A++Y +E+++ A+++ + G Sbjct: 177 DSAIRLTHLPTGVVVQCQNERSQHRNKEMAMKMLIAQIYQLEKQKKADQQEGLHGEKKG- 235 Query: 300 GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y R I DHR + ++ VL G +D I L Sbjct: 236 ISWGSQIRSYVLQPYRLIKDHRTDFEAGNVDAVLDGGLDGFIKAFLLW 283 >gi|149277162|ref|ZP_01883304.1| peptide chain release factor RF-2 [Pedobacter sp. BAL39] gi|149232039|gb|EDM37416.1| peptide chain release factor RF-2 [Pedobacter sp. BAL39] Length = 324 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 148/325 (45%), Gaps = 8/325 (2%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 + D K + AAI+ + + +D + + + Q + Sbjct: 4 QPGFWDDPKKAEKHLAAINSKKVWTDAWQVVNAKLEDTEVMFDFLQAGDATAEEMQEQYD 63 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 I LE + +D +++I AG GG+E+ + L RMY + Sbjct: 64 ECLALIEALEL----KNMLSSKEDQLHAVMQITAGAGGTESCDWAAMLMRMYIMWGEKNG 119 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +KV + + G K + +G + +K E+GVHR+ R+ +++ R HTS A+V Sbjct: 120 YKVTEQDYQEGEVAGVKSVTLQFAGDFSYGYLKGENGVHRLVRISPFDSNARRHTSFASV 179 Query: 205 AVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQ 262 V P I++++ +I +T R+ G+GGQ+VN ++AVR+ H P+GI++ +SQ Sbjct: 180 YVYPLVDDTIEIEVKDSEIEFETFRSGGAGGQNVNKVETAVRLYHKPSGIVIKNQESRSQ 239 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRI 321 QN+ AM++L+++LY+ E ++ +A + + +IR Y + + D R Sbjct: 240 LQNKENAMRLLKSQLYEAEMRKRMEATAAIEGSK-KKIEWGSQIRNYVLHPYKLVKDLRT 298 Query: 322 NLTLYKLEYVLQGYIDDIINPLLTA 346 N + VL G +++ + L Sbjct: 299 NYETSNAQGVLDGELNEFLKAYLME 323 >gi|255004320|ref|ZP_05279121.1| peptide chain release factor 2 (prfB) [Anaplasma marginale str. Virginia] Length = 255 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 101/258 (39%), Positives = 145/258 (56%), Gaps = 11/258 (4%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKWKVEVLSSSDNDDGGY 160 + D C L IR G GG+E+ + L RMY R+A + E++ D + G Sbjct: 1 MFSGEADGSGCFLVIRPGAGGTESNDWAAMLLRMYIRWAGTFHGFTTEIVDKIDGEAAGL 60 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPL 219 K + ISG G + K ESGVHR+ R+ ++S R HTS A+V V P A + D++I Sbjct: 61 KSVTVKISGNGAYGWAKTESGVHRLVRISPFDSSSRRHTSFASVEVSPIADDKIDIEILE 120 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 +D+RIDT RASG+GGQHVN T+SAVRITH+P+GI+V + +SQHQNR A +LR+RLY Sbjct: 121 KDLRIDTYRASGAGGQHVNKTESAVRITHMPSGIVVQCQTSRSQHQNRAEAYSLLRSRLY 180 Query: 279 DVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 ++E + + + + + IG G +IR+Y R + D R ++ VL G Sbjct: 181 EMELQEKEKKMAQEHDSRCDIGWG---HQIRSYVMHPYRMVKDLRTGHETGDVDAVLDGD 237 Query: 336 IDDIINPLLTAH--QAKM 351 +D I LT QA+ Sbjct: 238 LDKFIAAALTYKLSQAQK 255 >gi|156744082|ref|YP_001434211.1| peptide chain release factor 2 [Roseiflexus castenholzii DSM 13941] gi|156235410|gb|ABU60193.1| peptide chain release factor 2 [Roseiflexus castenholzii DSM 13941] Length = 317 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 104/316 (32%), Positives = 151/316 (47%), Gaps = 12/316 (3%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + + +I D++ DL + DS D+A + Sbjct: 1 MQRLTRLKEEVERIEALDRQLTALADLIDLAAAEEDDSLQADIAAELERTRREIEA---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + +L DD+ L I+AG GG++A + L RMY R+ R ++V ++ SD Sbjct: 57 -LEIEVLLSGPYDDRDAFLSIKAGMGGTDAQDWAEMLLRMYMRWGERRGFQVALIDQSDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-ID 214 ++ G K + G + K E+GVHR+ R+ A TS A V VLPE + + Sbjct: 116 EEAGIKSATIELRGPYAYGSAKAEAGVHRLIRLSPFNAGNTRQTSFAMVEVLPEVDDAPE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG----IMVTSSEKSQHQNRLRAM 270 V I EDIR+D RASG GGQ VNTTDSAVRIT+ P ++ +E+SQ QNR AM Sbjct: 176 VVIRPEDIRVDVFRASGHGGQGVNTTDSAVRITYKPGTPEQIVVTCQNERSQLQNRETAM 235 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE 329 +VLR RL + E +R ER+ R + D ++RTY + DHR + ++ Sbjct: 236 RVLRGRLLERELQRKREERARLR-GEYRQADFGNQMRTYYLHPYTLVKDHRTDYETSDVQ 294 Query: 330 YVLQGYIDDIINPLLT 345 VL G ID I L Sbjct: 295 AVLDGDIDPFIEAYLR 310 >gi|281421022|ref|ZP_06252021.1| peptide chain release factor 2 [Prevotella copri DSM 18205] gi|281404940|gb|EFB35620.1| peptide chain release factor 2 [Prevotella copri DSM 18205] Length = 375 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 156/351 (44%), Gaps = 20/351 (5%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I K F E +LR + E+ + I + Y + +L Sbjct: 23 IDQKKVEFEEEQLRTQAPDFWEDPKYAQEQMKKVKGIQKWLDGYKTVRLYADELQLAFDF 82 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + + K I +LE + + +D C+L+I +G GG+E+ + Sbjct: 83 YKDEMVTEEEVDADYAKAIKAIEDLEL----KNMLRQKEDPMDCVLKINSGAGGTESQDW 138 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG-RGVFSRMKFESGVHRVQR 187 L RMY R++ +KV + + D+ G K + TI G + +K E+GVHR+ R Sbjct: 139 AQMLMRMYMRWSEAHGYKVTITDMQEGDEAGIKSVTMTIEGGEYAYGYLKSENGVHRLVR 198 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P + + DT R+SG+GGQ+VN +S VR+ Sbjct: 199 VSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPAKLSWDTFRSSGAGGQNVNKVESGVRL 258 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 + T ++ + + Q +NR +A+ +L+++LYD K+ ++ K Sbjct: 259 RYWYTDPDTGEEEEILIENTETRDQPKNRAKALLLLKSQLYDRAMKKRLEAKAKIEAGKK 318 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N ++ V+ G IDD I L Sbjct: 319 KIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVDGVMDGKIDDFIKAYLME 366 >gi|313764090|gb|EFS35454.1| peptide chain release factor 2 [Propionibacterium acnes HL013PA1] gi|314914951|gb|EFS78782.1| peptide chain release factor 2 [Propionibacterium acnes HL005PA4] Length = 370 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 99/326 (30%), Positives = 161/326 (49%), Gaps = 11/326 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E + + D + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQGAVPNLWDDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 N-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E A E + + +EI LE L D++ ++ IR+ GG +AA F Sbjct: 90 AADDKESLAEATTETVKLREEIDALEV----RTLLSGQYDEREAVVTIRSEAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 146 AEMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+T Sbjct: 206 SPFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLT 265 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++ Sbjct: 266 HLPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QM 322 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYV 331 R+Y + + D R N + + V Sbjct: 323 RSYVLHPYQMVKDLRTNHEVGNTDAV 348 >gi|330686486|gb|EGG98080.1| putative peptide chain release factor 2 [Staphylococcus epidermidis VCU121] Length = 271 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 98/259 (37%), Positives = 145/259 (55%), Gaps = 9/259 (3%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + LL D + ILE+ G GG+E+ +V L RMY+RY +KVE + Sbjct: 13 DHFELQLLLDGPYDANNAILELHPGAGGTESQDWVSMLLRMYQRYCEQSGFKVETVDYLP 72 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D+ G K + I G + +K E GVHR+ R+ ++SGR HTS A+ V+P+ Sbjct: 73 GDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFDNDE 132 Query: 214 -DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 +++I +DI +DT RASG+GGQH+N T+SA+RITH PTGI+V +E+SQ +NR AMK Sbjct: 133 IEIEINSDDITVDTFRASGAGGQHINKTESAIRITHHPTGIVVNNQNERSQIKNREAAMK 192 Query: 272 VLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKL 328 +L+++LY ++ + E + R Q IG G +IR+Y F + DHR N K+ Sbjct: 193 MLKSKLYQLKLEEQEREMAEIRGEQKEIGWG---SQIRSYVFHPYSMVKDHRTNEETGKV 249 Query: 329 EYVLQGYIDDIINPLLTAH 347 + V+ G I I L Sbjct: 250 DAVMDGDIGPFIEAYLRHQ 268 >gi|254526132|ref|ZP_05138184.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9202] gi|221537556|gb|EEE40009.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9202] Length = 354 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 175/339 (51%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK + E+E ++ + + ++ + + +++ + D+ K D + + ++ Sbjct: 11 LKAKRRELEQISAQPAFWENQEEAKKQMLILDDVKAQLELLDKWKTFISDANASLELYSL 70 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + +E K++RE ++ + L D + ++ I AG GG++A +V Sbjct: 71 EPE--EEMILESKQGLKKLRENLDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEI 128 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + + S ++ G K + I G+ + ++ E G HR+ R+ Sbjct: 129 LLRMYSRWADNNQMTLVINELSQGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPF 188 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P Sbjct: 189 NANGKRQTSFAGVEVMPKLDDNISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLP 248 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 +GI V + E+SQ QN+ +AM +L+++L + +++ A E + K I +IR Y Sbjct: 249 SGISVRCTQERSQLQNKEKAMLLLKSKLLVIAKEQRAAEVADI-KGDIVEAAWGNQIRNY 307 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R L+ VL G ++ I+ LL + Sbjct: 308 VFHPYQMVKDLRTMQETNDLDSVLDGGLEPFIHELLRMN 346 >gi|157412537|ref|YP_001483403.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9215] gi|157387112|gb|ABV49817.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT 9215] Length = 354 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 175/339 (51%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK + E+E ++ + + ++ + + +++ + D+ K D + + ++ Sbjct: 11 LKAKRRELEQISAQPAFWENQEEAKKQMLILDDVKAQLELLDKWKTFISDANASLELYSL 70 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + +E K++RE ++ + L D + ++ I AG GG++A +V Sbjct: 71 EPE--EEMILESKQGLKKLRENLDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEI 128 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + + S ++ G K + I G+ + ++ E G HR+ R+ Sbjct: 129 LLRMYSRWADNNQMSLVINELSQGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPF 188 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P Sbjct: 189 NANGKRQTSFAGVEVMPKLDDNISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLP 248 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 +GI V + E+SQ QN+ +AM +L+++L + +++ A E + K I +IR Y Sbjct: 249 SGISVRCTQERSQLQNKEKAMLLLKSKLLVIAKEQRAAEVADI-KGDIVEAAWGNQIRNY 307 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R L+ VL G ++ I+ LL + Sbjct: 308 VFHPYQMVKDLRTMQETNDLDSVLDGGLEPFIHELLRMN 346 >gi|148260683|ref|YP_001234810.1| peptide chain release factor 2 [Acidiphilium cryptum JF-5] gi|326403877|ref|YP_004283959.1| peptide chain release factor 2 [Acidiphilium multivorum AIU301] gi|146402364|gb|ABQ30891.1| bacterial peptide chain release factor 1 (bRF-1) [Acidiphilium cryptum JF-5] gi|325050739|dbj|BAJ81077.1| peptide chain release factor 2 [Acidiphilium multivorum AIU301] Length = 323 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 100/316 (31%), Positives = 162/316 (51%), Gaps = 13/316 (4%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 E ++ + +++ ++ L + S + + E+ Sbjct: 3 RERNRLATQTEAVHTIERETEDALTLAELAEAEGDQSVLAEAEAALRRISEEA-----KR 57 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 L D C LE+ AG GG+EA + L RMY R+A +KV +L S+ + Sbjct: 58 REIESLLAGEADGNDCYLEVNAGAGGTEAQDWAEMLLRMYTRWAEQHGYKVTMLEESEGE 117 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDV 215 G K +SG + +K E+GVHR+ R+ +A+ R TS A+V V P I+V Sbjct: 118 QAGIKSATIQVSGMNAYGWLKTEAGVHRLVRISPFDANARRQTSFASVWVYPVVDDSIEV 177 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 +I D+++DT RASG+GGQHVN T+SA+RITH+P+GI+V +++SQH+NR AM++L+ Sbjct: 178 EINPADLKVDTFRASGAGGQHVNKTESAIRITHVPSGIIVACQNDRSQHRNRATAMEMLK 237 Query: 275 ARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 +RLY++E ++ A S + K IG G +IR+Y + + + D R N + V Sbjct: 238 SRLYEMELQKREEAAAASESAKRDIGWG---HQIRSYVLAPYQLVKDLRTNFESGNPDAV 294 Query: 332 LQGYIDDIINPLLTAH 347 L G +D + L + Sbjct: 295 LNGDLDAFMAASLASR 310 >gi|239831796|ref|ZP_04680125.1| peptide chain release factor 2 [Ochrobactrum intermedium LMG 3301] gi|239824063|gb|EEQ95631.1| peptide chain release factor 2 [Ochrobactrum intermedium LMG 3301] Length = 321 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 109/317 (34%), Positives = 158/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + N S I+D E+ + Sbjct: 1 MRERQQLEDSINGINHLTQTLNDSIELIAMGEEENDKSIIQDAENTIRELKEEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D +E+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYVEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + MK ESGVHR+ R+ +++ R HTS A++ V P ID Sbjct: 116 EEAGIKSATILVKGHNSYGMMKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREAATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGSVTPFMEAALAHR 309 >gi|145635061|ref|ZP_01790767.1| peptide chain release factor 2 [Haemophilus influenzae PittAA] gi|148826180|ref|YP_001290933.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittEE] gi|145267669|gb|EDK07667.1| peptide chain release factor 2 [Haemophilus influenzae PittAA] gi|148716340|gb|ABQ98550.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittEE] Length = 248 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 142/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGKHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 +SG F ++ E+G+HR+ R +++ R HTS + V PE + Sbjct: 61 SATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+P+GI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 RFIEASLKA 246 >gi|319776546|ref|YP_004139034.1| peptide chain release factor 2 [Haemophilus influenzae F3047] gi|317451137|emb|CBY87370.1| peptide chain release factor 2 [Haemophilus influenzae F3047] Length = 248 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 143/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D +C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGEHDACNCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 +SG F ++ E+G+HR+ R +++ R HTS + V PE + Sbjct: 61 SATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+P+GI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKKNADKQVMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 RFIEASLKA 246 >gi|68486191|ref|XP_709944.1| hypothetical protein CaO19.1303 [Candida albicans SC5314] gi|46434441|gb|EAK93850.1| hypothetical protein CaO19.1303 [Candida albicans SC5314] gi|238881487|gb|EEQ45125.1| peptide chain release factor 1, mitochondrial precursor [Candida albicans WO-1] Length = 394 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 126/350 (36%), Positives = 197/350 (56%), Gaps = 17/350 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ E+ ++++ D +K + + I+S + QE +L + Sbjct: 52 QRAQTIQQEHKELSEKLADKYIPDLQVK----FDNYTNILSMFDKLETLTQEYIELTEIT 107 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + E ++ + V +I +L +E+ L P DK CI+E+R G GG+EA+ Sbjct: 108 DDPDLYKEAQEELKSIV---IPQIEKLVSELRVKLRPPVKYADKGCIIELRPGVGGNEAS 164 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF GDL MY +A+ WK +++S N G E + +I G + M+ ESGVHRVQ Sbjct: 165 LFTGDLLNMYMNFASEMNWKYKIISEGKNSSGFINEAILSIDTLGSYDIMRHESGVHRVQ 224 Query: 187 RVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVN 238 R+P TE GRVHTS A V VLP+ + + ++RIDTMRA G GGQHVN Sbjct: 225 RIPETETKGRVHTSTAAVVVLPKLSEGNESSLKDDERVFAPGEVRIDTMRAGGKGGQHVN 284 Query: 239 TTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVR+ HIPTG+ ++ E+SQ N+ +A +LR+RL E++ ++ R Q+ Sbjct: 285 TTDSAVRLLHIPTGMIVIQQDERSQPLNKAKAFAILRSRLAQKEQEEEMLKQKKLRTDQV 344 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTA 346 S DRS++I+TYN+ + R+TDHRIN +++ LE VL+G + +I+ + Sbjct: 345 SSTDRSDKIKTYNYKENRVTDHRINYSMHDLEGVLEGRKLGQLIDVYRSQ 394 >gi|302759755|ref|XP_002963300.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii] gi|300168568|gb|EFJ35171.1| hypothetical protein SELMODRAFT_405078 [Selaginella moellendorffii] Length = 509 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 149/294 (50%), Positives = 204/294 (69%), Gaps = 10/294 (3%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 I K++E L ++ + D E+R LA E+ +E+R+ ++++ L+PKD D Sbjct: 2 IKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATREVRDAQHDVLLELIPKDEAD 61 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + G GG EA++F DLF+MY++YAA W+ EVLS + D GYKE A IS Sbjct: 62 SR--------GAGGDEASIFASDLFKMYDKYAANNSWRFEVLSITTTDTRGYKEASAAIS 113 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 G GV+ +KFESGVHRVQRVP TE +GR+HTS A+VA+LPEA EIDV+I ++I+IDT R Sbjct: 114 GDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPEANEIDVEIRNDEIKIDTYR 173 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVNTT SAVR+TH PTGI+V E+SQH+N+ +A+ +L ARLY++ER R Sbjct: 174 AGGAGGQHVNTTCSAVRVTHTPTGIVVAIQDERSQHKNKAKALSILYARLYELERSRAVA 233 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDII 340 RS R+ QIGS DRSERIRTYNF QGR+TDHR+ +T + +E +++G +D+ I Sbjct: 234 SRSELRQDQIGSSDRSERIRTYNFPQGRVTDHRVGVTQHAIEQIMEGIDVDNWI 287 >gi|154148037|ref|YP_001406088.1| peptide chain release factor 2 [Campylobacter hominis ATCC BAA-381] gi|238686699|sp|A7I0P7|RF2_CAMHC RecName: Full=Peptide chain release factor 2; Short=RF-2 gi|153804046|gb|ABS51053.1| peptide chain release factor 2 [Campylobacter hominis ATCC BAA-381] Length = 364 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 113/343 (32%), Positives = 182/343 (53%), Gaps = 12/343 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH-- 69 L R AEIE + K + + I + ++ + + + E D Sbjct: 29 LMTRLAEIEKTEQDPALWVDAKKAAQIGREKTKISNILAKFKKAQNELNDAKEFYELAVS 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 +D E + E + + I LE + +DDK+ I+ I G GG+E + Sbjct: 89 ENDGETINELFRESAKLSENIANLELSMM----LSGENDDKNAIINIHPGAGGTEGEDWA 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 G L+RMY R+ +K+E+L + D+ G K++ + G + +K ESG+HR+ R+ Sbjct: 145 GMLYRMYVRFCERVGYKIEILDFQEGDEAGIKDVNFIVKGENAYGYLKVESGIHRLVRIS 204 Query: 190 ATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +++GR HTS A+V V PE +I ++I +D+RID R+SG+GGQHVN T+SAVRITH Sbjct: 205 PFDSAGRRHTSFASVVVSPELDDDIQINIDEKDLRIDYYRSSGAGGQHVNKTESAVRITH 264 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IPT I+V +++ QH+N+ AMKVL++RLY++E+ + E + K I G +IR Sbjct: 265 IPTNIVVQCQNDRDQHKNKASAMKVLKSRLYELEKLKKQEESNKTPKSDIAWG---YQIR 321 Query: 308 TYN-FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 Y F ++ D R N+ + E +L G I I+ +L +Q+ Sbjct: 322 NYVLFPYQQVKDLRSNIAYSQAEAILDGDIKKILEDVLINNQS 364 >gi|153207868|ref|ZP_01946445.1| peptide chain release factor 2 [Coxiella burnetii 'MSU Goat Q177'] gi|165918820|ref|ZP_02218906.1| peptide chain release factor 2 [Coxiella burnetii RSA 334] gi|212219147|ref|YP_002305934.1| peptide chain release factor 2 [Coxiella burnetii CbuK_Q154] gi|120576294|gb|EAX32918.1| peptide chain release factor 2 [Coxiella burnetii 'MSU Goat Q177'] gi|165917452|gb|EDR36056.1| peptide chain release factor 2 [Coxiella burnetii RSA 334] gi|212013409|gb|ACJ20789.1| bacterial peptide chain release factor 2 [Coxiella burnetii CbuK_Q154] Length = 289 Score = 191 bits (485), Expect = 1e-46, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 7/278 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E ++ K++ + E+ + + D + L+I+AG+GG+EA + L Sbjct: 7 QEKETDLITDLNKDFKQLEKTIAEMEFQRMFSGEMDSNNAYLDIQAGSGGTEAQDWAEML 66 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+ + ++ +S + G K +G + ++ E+GVHR+ R + Sbjct: 67 LRMYLRWGDKHGFTTTLMEASPGEVAGIKSATIEFTGSYAYGWLRSETGVHRLVRKSPFD 126 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS A+V V PE + ++RIDT RASG+GGQHVN TDSAVRITH+P+ Sbjct: 127 SGNRRHTSFASVFVSPEIDDDIEIEINPAELRIDTYRASGAGGQHVNRTDSAVRITHLPS 186 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRT 308 GI+V +++SQH+N+ +AMK LRA+LY++E + +++ K +I G+ +IR+ Sbjct: 187 GIVVQCQNDRSQHKNKAQAMKQLRAKLYEMEMMKQQEKQALLEASKSEISWGN---QIRS 243 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y R+ D R + + VL G ID I L Sbjct: 244 YVLDASRVKDLRTGVETSNTQAVLDGDIDLFIEACLKQ 281 >gi|224536533|ref|ZP_03677072.1| hypothetical protein BACCELL_01408 [Bacteroides cellulosilyticus DSM 14838] gi|224521789|gb|EEF90894.1| hypothetical protein BACCELL_01408 [Bacteroides cellulosilyticus DSM 14838] Length = 371 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 98/372 (26%), Positives = 160/372 (43%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEI--------------ELRM--SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ +K R + E ++ D + + + Sbjct: 1 MITIEQLKSIKERTEALYRYLDIEGKKIQVEEEQLRTQAPGFWDDQKTAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 I+ Y++ K +L + + + I ELE + Sbjct: 61 QWIAGYNEIKTLSDELQLAFDFYKDELVTEEEIDEAYAKASVAIDELELKNMLRDEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKAVISNLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+V+I + +I D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVNINVANISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|167855181|ref|ZP_02477952.1| peptide chain release factor 2 [Haemophilus parasuis 29755] gi|219871045|ref|YP_002475420.1| peptide chain release factor 2 [Haemophilus parasuis SH0165] gi|167853726|gb|EDS24969.1| peptide chain release factor 2 [Haemophilus parasuis 29755] gi|219691249|gb|ACL32472.1| peptide chain release factor 2 [Haemophilus parasuis SH0165] Length = 248 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 143/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 +SG F ++ E+G+HR+ R +++ R HTS A V PE + D++I Sbjct: 61 SATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEVDDDFDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+P+GI+V + +SQHQN+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNGRSQHQNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E + E+ K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 MEMMKKNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|328752610|gb|EGF66226.1| peptide chain release factor 2 [Propionibacterium acnes HL025PA2] Length = 370 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 98/326 (30%), Positives = 161/326 (49%), Gaps = 11/326 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K A++E +++ + +S + ++I ++ + +D+H ++ Sbjct: 30 EAKKAEIADLERQVAVPNLWGDQENAQRVTSRLSALQAEIERLERLRARIEDVHVLLEFA 89 Query: 70 N-SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 D E A E + + +EI LE L D++ ++ IR+ GG +AA F Sbjct: 90 AADDKESLAEATTETVKLREEIDALEV----RTLLSGQYDEREAVVTIRSEAGGVDAADF 145 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R++ +KVE+L +S ++ G K + + + E G HR+ R+ Sbjct: 146 AEMLLRMYLRWSERHGYKVEILDTSYAEEAGIKSATFVVHAPFAYGTLSVEQGTHRLVRI 205 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 + GR TS A V VLP VDIP D+R+D ASG GGQ VNTTDSAVR+T Sbjct: 206 SPFDNQGRRQTSFAGVEVLPVVEETDHVDIPESDLRVDVFHASGPGGQGVNTTDSAVRLT 265 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + G ++ Sbjct: 266 HLPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNSWGA---QM 322 Query: 307 RTYNFSQGR-ITDHRINLTLYKLEYV 331 R+Y + + D R N + + V Sbjct: 323 RSYVLHPYQMVKDLRTNHEVGNTDAV 348 >gi|258544156|ref|ZP_05704390.1| peptide chain release factor 2 [Cardiobacterium hominis ATCC 15826] gi|258520598|gb|EEV89457.1| peptide chain release factor 2 [Cardiobacterium hominis ATCC 15826] Length = 250 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 93/249 (37%), Positives = 138/249 (55%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+ R +K E++ S D G K Sbjct: 1 MFSGELDPNNAFLDIQAGSGGTEAQDWASMLLRMYLRWGEARGFKTELIEESPGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +G + ++ E GVHR+ R ++ R HTS A V V PE + +++I Sbjct: 61 SATIEFTGEYAYGWLRTEIGVHRLVRKSPFDSGNRRHTSFAAVFVSPEIDDNIEIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+R+D RASG+GGQHVN T+SAVRITH+PT I+V + + +SQH+NR MK LRA+LY+ Sbjct: 121 DLRVDVYRASGAGGQHVNRTESAVRITHLPTNIVVQSQNSRSQHENRSTCMKQLRAKLYE 180 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E + + + + K IG G+ +IR+Y Q RI D R + VL G +D Sbjct: 181 LELSKRSASAQAIEDSKSDIGWGN---QIRSYVLDQSRIKDLRTGYETSNTQAVLDGGLD 237 Query: 338 DIINPLLTA 346 + L Sbjct: 238 PFLQASLKQ 246 >gi|145631266|ref|ZP_01787039.1| peptide chain release factor 2 [Haemophilus influenzae R3021] gi|145633057|ref|ZP_01788789.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae 3655] gi|145637033|ref|ZP_01792696.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittHH] gi|145639267|ref|ZP_01794873.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittII] gi|145641183|ref|ZP_01796763.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae R3021] gi|148828361|ref|YP_001293114.1| peptide chain release factor 2 [Haemophilus influenzae PittGG] gi|229844833|ref|ZP_04464971.1| peptide chain release factor 2 [Haemophilus influenzae 6P18H1] gi|229846242|ref|ZP_04466354.1| peptide chain release factor 2 [Haemophilus influenzae 7P49H1] gi|319897322|ref|YP_004135518.1| peptide chain release factor 2 [Haemophilus influenzae F3031] gi|144983193|gb|EDJ90688.1| peptide chain release factor 2 [Haemophilus influenzae R3021] gi|144986283|gb|EDJ92862.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae 3655] gi|145269687|gb|EDK09627.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittHH] gi|145271570|gb|EDK11481.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae PittII] gi|145274020|gb|EDK13886.1| 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase [Haemophilus influenzae 22.4-21] gi|148719603|gb|ABR00731.1| peptide chain release factor 2 [Haemophilus influenzae PittGG] gi|229811246|gb|EEP46963.1| peptide chain release factor 2 [Haemophilus influenzae 7P49H1] gi|229812214|gb|EEP47905.1| peptide chain release factor 2 [Haemophilus influenzae 6P18H1] gi|317432827|emb|CBY81192.1| peptide chain release factor 2 [Haemophilus influenzae F3031] Length = 248 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 92/249 (36%), Positives = 142/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGEHDACDCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE- 220 +SG F ++ E+G+HR+ R +++ R HTS + V PE + Sbjct: 61 SATIKVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+P+GI+V +++SQH+N+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ ++ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQKKNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 RFIEASLKA 246 >gi|282856730|ref|ZP_06265994.1| peptide chain release factor 2 [Pyramidobacter piscolens W5455] gi|282585426|gb|EFB90730.1| peptide chain release factor 2 [Pyramidobacter piscolens W5455] Length = 252 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 95/253 (37%), Positives = 142/253 (56%), Gaps = 4/253 (1%) Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 LL D S IL + AG+GG ++ + L+RMY R+ R++K ++L +++ Sbjct: 1 MALLLSGPYDHCSAILSVHAGSGGLDSQDWAEMLYRMYLRWCEERRFKTKLLDYQHDEEA 60 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K I G + ++ E GVHR+ R+ + + R HTS A+V V P+ ++DV+I Sbjct: 61 GIKSATLLIQGETAYGYLRSEIGVHRLVRISPFDTNKRRHTSFASVDVSPQLPDDVDVEI 120 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 ED+RIDT R+SG+GGQHVN TDSAVRITH+PTGI+V +E+SQH N+ AM VL+++ Sbjct: 121 APEDLRIDTYRSSGAGGQHVNMTDSAVRITHLPTGIVVSCQNERSQHMNKATAMSVLKSK 180 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY 335 LY E ++ E +A + S +IR+Y + DHR + VL G Sbjct: 181 LYQRELEQRQAEMNALAGEKKES-TWGSQIRSYVLQPYTLVKDHRTGEETGNVGGVLDGG 239 Query: 336 IDDIINPLLTAHQ 348 +D I L + Sbjct: 240 LDPFILAYLRWAR 252 >gi|158521778|ref|YP_001529648.1| peptide chain release factor 2 [Desulfococcus oleovorans Hxd3] gi|158510604|gb|ABW67571.1| peptide chain release factor 2 [Desulfococcus oleovorans Hxd3] Length = 337 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 109/339 (32%), Positives = 169/339 (49%), Gaps = 10/339 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ R AEIE ++ + D + S + ++ + + +E +D ++ Sbjct: 1 MRERLAEIEALVAREGAWDDPERAATLLKERSLLSDRLDLLSELGREVEDAEVLLELAEE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 +++ A++ + +++ L D DD I+ I AG GG++A + Sbjct: 61 EADSDAAAEVTRRVEGVRKKI--EKLSIDLTLSDEDDPADAIVAINAGAGGTDAQDWAEM 118 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 LFRMY R+ + +K+E++ D+ G K + G F +K ESGVHR+ R+ Sbjct: 119 LFRMYTRWIERKGYKLEMIDHQPGDEAGIKSATFSAKGLNAFGYLKNESGVHRLVRISPF 178 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ASG+ TS A+V V P+ E D+RIDT RASG+GGQHVN T SAVRITH P Sbjct: 179 NASGKRQTSFASVFVFPQIDRQIDIDIDEKDLRIDTFRASGAGGQHVNKTSSAVRITHYP 238 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIR 307 +G++V E+SQ +NR AM VLRARLY +E+ + + K I G +IR Sbjct: 239 SGVVVQCQQERSQLRNREIAMAVLRARLYKLEKDKQNQKLQDMEAGKDDIAWG---SQIR 295 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +Y + DHR + + + VL G ID I +L Sbjct: 296 SYFLHPYQKAKDHRTDFEIGDVYSVLDGEIDPFIEAVLM 334 >gi|87120696|ref|ZP_01076589.1| peptide chain release factor 2, programmed frameshift [Marinomonas sp. MED121] gi|86163924|gb|EAQ65196.1| peptide chain release factor 2, programmed frameshift [Marinomonas sp. MED121] Length = 293 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 12/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 + + ++L + + + + + + +E+ +++ + + D + Sbjct: 2 ESGLVDAKELLDMAVEEDDEDSVEAVTME-----LEELEAQLSKLEFRRMFSQEMDPTNA 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 L+I+AG+GG+EA + L RMY R+ + +KVE++ S D G K G Sbjct: 57 FLDIQAGSGGTEAQDWANMLLRMYLRWGEDKGFKVELMEVSAGDVAGIKSATIRFEGEYA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 F ++ E+GVHR+ R ++ R HTS A+V + PE + ++DI D+R DT R+SG Sbjct: 117 FGWLRTETGVHRLVRKSPFDSGSRRHTSFASVFLSPEIDDNVEIDINPADLRTDTYRSSG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANE 288 +GGQHVNTTDSAVRITHIPTGI+V +++SQH NR AMK LRA+LY+ E ++ A + Sbjct: 177 AGGQHVNTTDSAVRITHIPTGIVVQCQNQRSQHANRDFAMKQLRAKLYEFEMQKRTEAAQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R + VL G +D I L Sbjct: 237 AVEDTKSDIGWG---SQIRSYVLDSSRIKDLRTGVESSNTGAVLDGNLDQFIVASLKQ 291 >gi|253571104|ref|ZP_04848511.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251839057|gb|EES67141.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 354 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 93/351 (26%), Positives = 150/351 (42%), Gaps = 19/351 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I K + E +LR D K + + + I Y++ K +L Sbjct: 5 DIDGKKIQVEEEQLRTQAPGFWDDQKKAEAQMKLVKDLQKWIDGYNEVKTLADELELSFD 64 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + + LE + +D D +C+L+I +G GG+E+ Sbjct: 65 FYKEELVTEGDVDAAYAKASEAVEALEL----KNMLRDEADQMACVLKINSGAGGTESQD 120 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY RYA +K + + + D+ G K I G + +K E+GVHR+ R Sbjct: 121 WASMLMRMYLRYAETNGYKATIANLQEGDEAGIKTCTINIEGDFAYGYLKGENGVHRLVR 180 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDI-RIDTMRASGSGGQHVNTTDSAVRI 246 V A G+ TS A+V V P + L DT R+ G+GGQ+VN +S VR+ Sbjct: 181 VSPYNAQGKRMTSFASVFVTPLVDDSIEVNILPACISWDTFRSGGAGGQNVNKVESGVRL 240 Query: 247 THIPTG---------IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KL 295 + ++ + + Q +NR AM+ LR+ LYD E + E++ K Sbjct: 241 RYQYKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSILYDKELQHRMAEQAKVEAGKK 300 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +I G +IR+Y F R+ DHR N + V+ G I++ I L Sbjct: 301 KIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVNGVMDGKIEEFIKAYLME 348 >gi|212213085|ref|YP_002304021.1| peptide chain release factor 2 [Coxiella burnetii CbuG_Q212] gi|212011495|gb|ACJ18876.1| bacterial peptide chain release factor 2 [Coxiella burnetii CbuG_Q212] Length = 289 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 7/278 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E ++ K++ + E+ + + D + L+I+AG+GG+EA + L Sbjct: 7 QEKDTDLITDLNKDFKQLEKTIAEMEFQRMFSGEMDSNNAYLDIQAGSGGTEAQDWAEML 66 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+ + ++ +S + G K +G + ++ E+GVHR+ R + Sbjct: 67 LRMYLRWGDKHGFTTTLMEASPGEVAGIKSATIEFTGSYAYGWLRSETGVHRLVRKSPFD 126 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS A+V V PE + ++RIDT RASG+GGQHVN TDSAVRITH+P+ Sbjct: 127 SGNRRHTSFASVFVSPEIDDDIEIEINPAELRIDTYRASGAGGQHVNRTDSAVRITHLPS 186 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRT 308 GI+V +++SQH+N+ +AMK LRA+LY++E + +++ K +I G+ +IR+ Sbjct: 187 GIVVQCQNDRSQHKNKAQAMKQLRAKLYEMEMMKQQEKQALLEASKSEISWGN---QIRS 243 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y R+ D R + + VL G ID I L Sbjct: 244 YVLDASRVKDLRTGVETSNTQAVLDGDIDLFIEACLKQ 281 >gi|258645336|ref|ZP_05732805.1| peptide chain release factor 2 [Dialister invisus DSM 15470] gi|260402685|gb|EEW96232.1| peptide chain release factor 2 [Dialister invisus DSM 15470] Length = 330 Score = 191 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 90/332 (27%), Positives = 169/332 (50%), Gaps = 12/332 (3%) Query: 23 MSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 MS+ + +++++ + + + ++L + + N Sbjct: 1 MSDPSFWENGDHAKEISQKATEAKAAYDTYTRLFARAESIKELLDMAIEEND-----QDM 55 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ E++++ ++ LL D D I+ AG GG+EA + L RMY ++ Sbjct: 56 EGELEEEINELKDILDKKEIELLLNDEYDANDAIITFHAGAGGTEAQDWTEMLIRMYIKW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +E L+ D+ G K + G+ + +K E GVHR+ R+ +A+ R HT Sbjct: 116 AESEGFVLEELNMLPGDEAGVKSAEYMVRGKFAYGLLKSEKGVHRLVRISPFDAAKRRHT 175 Query: 200 SAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTS 257 S + V V+PE +I++D+ + D+R+D RASG+GGQH+N T SAVR+THIPTGI+ Sbjct: 176 SFSAVDVMPEIGDDIEIDLNMADVRVDYYRASGAGGQHINKTSSAVRMTHIPTGIVAACQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +E+SQ QN+ + +++L+A+L+++E ++ + Q + +IR+Y F + Sbjct: 236 NERSQFQNKEQCLRLLKAKLFELEMQKREQVKKGIEGEQQA-IEWGSQIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 D+R + ++ V+ G ++ I L + Sbjct: 295 KDNRTGIETGNIQSVMDGGLNPFIEGFLKHKK 326 >gi|153009595|ref|YP_001370810.1| peptide chain release factor 2 [Ochrobactrum anthropi ATCC 49188] gi|151561483|gb|ABS14981.1| peptide chain release factor 2 [Ochrobactrum anthropi ATCC 49188] Length = 321 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 107/317 (33%), Positives = 159/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + + S I+D ++ + Sbjct: 1 MRERQQLEDSINGINHLKQTLNDSIELIAMGEEEDDKSIIQDAENTIRELKQEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D +E+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYVEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + MK ESGVHR+ R+ +++ R HTS A++ V P ID Sbjct: 116 EEAGIKSATILVKGHNSYGMMKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K +IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREAATDAANATKTEIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGSVTPFMEAALAHR 309 >gi|297520245|ref|ZP_06938631.1| peptide chain release factor 2 [Escherichia coli OP50] Length = 248 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 99/249 (39%), Positives = 148/249 (59%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C L+I+AG+GG+EA + L RMY R+A R +K E++ S+ + G K Sbjct: 1 MFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRWAESRGFKTEIIEESEGEVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLE 220 + ISG + ++ E+GVHR+ R ++ GR HTS ++ V PE +ID++I Sbjct: 61 SVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LEMQKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 QFIEASLKA 246 >gi|154705875|ref|YP_001424983.1| peptide chain release factor 2 [Coxiella burnetii Dugway 5J108-111] gi|154355161|gb|ABS76623.1| bacterial peptide chain release factor 2 (RF-2) [Coxiella burnetii Dugway 5J108-111] Length = 289 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 92/278 (33%), Positives = 148/278 (53%), Gaps = 7/278 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E ++ K++ + E+ + + D + L+I+AG+GG+EA + L Sbjct: 7 QEKETDLITDLNKDFKQLEKTIAEMEFQRMFSGEMDSNNAYLDIQAGSGGTEAQDWAEML 66 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+ + ++ +S + G K +G + ++ E+GVHR+ R + Sbjct: 67 LRMYLRWGDKHGFTTTLMEASPGEVAGIKSATIEFTGSYAYGWLRSETGVHRLVRKSPFD 126 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS A+V V PE + ++RIDT RASG+GGQHVN TDSAVRITH+P+ Sbjct: 127 SGNRRHTSFASVFVSPEIDDDIEIEINPAELRIDTYRASGAGGQHVNRTDSAVRITHLPS 186 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRT 308 GI+V +++SQH+N+ +AMK LRA+LY++E + +++ K +I G+ +IR+ Sbjct: 187 GIVVQCQNDRSQHKNKAQAMKQLRAKLYEMEMMKQQEKQALLEVSKSEISWGN---QIRS 243 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y R+ D R + + VL G ID I L Sbjct: 244 YVLDASRVKDLRTGVETSNTQAVLDGDIDLFIEACLKQ 281 >gi|319900327|ref|YP_004160055.1| bacterial peptide chain release factor 2 (bRF-2) [Bacteroides helcogenes P 36-108] gi|319415358|gb|ADV42469.1| bacterial peptide chain release factor 2 (bRF-2) [Bacteroides helcogenes P 36-108] Length = 371 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 157/372 (42%), Gaps = 35/372 (9%) Query: 3 FLSHKQICDLKNRFAEIELRM----------------SESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D+K R + + + + + + Sbjct: 1 MITAEQLKDIKERTEALNRYLDIEGKKIQVEEEQLRTQAPGFWEDQKAAEAQMKKVKGLQ 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 IS Y+ K ++ + + + + LE + Sbjct: 61 QWISGYNGVKTLTDEVQLAFDFYKDELVSEEEVDEAFAKASAAVEALELKNMLREEADQM 120 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ G K Sbjct: 121 D----CVLKINSGAGGTESQDWANMLMRMYLRYAETHGYKAAIANLQEGDEAGIKTCTIE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 ISG + +K E+GVHR+ RV A G+ TS A+V V P I+VDI + +I D Sbjct: 177 ISGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVDIKVANISWD 236 Query: 226 TMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLRAMKVLRAR 276 T R+SG+GGQ+VN +S VR+ + ++ + + Q +NR AM+ LR+ Sbjct: 237 TFRSSGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNRENAMRQLRSI 296 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LYD E + E++ K +I G +IR+Y F R+ DHR N + V+ G Sbjct: 297 LYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTSDVNGVMDG 353 Query: 335 YIDDIINPLLTA 346 ID I L Sbjct: 354 KIDGFIKAYLME 365 >gi|17987337|ref|NP_539971.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. 16M] gi|62289859|ref|YP_221652.1| peptide chain release factor 2 [Brucella abortus bv. 1 str. 9-941] gi|82699784|ref|YP_414358.1| peptide chain release factor 2 [Brucella melitensis biovar Abortus 2308] gi|189024100|ref|YP_001934868.1| peptide chain release factor 2 [Brucella abortus S19] gi|225627404|ref|ZP_03785441.1| peptide chain release factor 2 [Brucella ceti str. Cudo] gi|225852429|ref|YP_002732662.1| peptide chain release factor 2 [Brucella melitensis ATCC 23457] gi|237815350|ref|ZP_04594348.1| peptide chain release factor 2 [Brucella abortus str. 2308 A] gi|254689165|ref|ZP_05152419.1| peptide chain release factor 2 [Brucella abortus bv. 6 str. 870] gi|254693648|ref|ZP_05155476.1| peptide chain release factor 2 [Brucella abortus bv. 3 str. Tulya] gi|254697300|ref|ZP_05159128.1| peptide chain release factor 2 [Brucella abortus bv. 2 str. 86/8/59] gi|254706874|ref|ZP_05168702.1| peptide chain release factor 2 [Brucella pinnipedialis M163/99/10] gi|254710017|ref|ZP_05171828.1| peptide chain release factor 2 [Brucella pinnipedialis B2/94] gi|254714019|ref|ZP_05175830.1| peptide chain release factor 2 [Brucella ceti M644/93/1] gi|254716923|ref|ZP_05178734.1| peptide chain release factor 2 [Brucella ceti M13/05/1] gi|254719019|ref|ZP_05180830.1| peptide chain release factor 2 [Brucella sp. 83/13] gi|254730198|ref|ZP_05188776.1| peptide chain release factor 2 [Brucella abortus bv. 4 str. 292] gi|256031512|ref|ZP_05445126.1| peptide chain release factor 2 [Brucella pinnipedialis M292/94/1] gi|256044588|ref|ZP_05447492.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. Rev.1] gi|256061021|ref|ZP_05451178.1| peptide chain release factor 2 [Brucella neotomae 5K33] gi|256113462|ref|ZP_05454303.1| peptide chain release factor 2 [Brucella melitensis bv. 3 str. Ether] gi|256159637|ref|ZP_05457399.1| peptide chain release factor 2 [Brucella ceti M490/95/1] gi|256254917|ref|ZP_05460453.1| peptide chain release factor 2 [Brucella ceti B1/94] gi|256257415|ref|ZP_05462951.1| peptide chain release factor 2 [Brucella abortus bv. 9 str. C68] gi|256264074|ref|ZP_05466606.1| peptide chain release factor 2 [Brucella melitensis bv. 2 str. 63/9] gi|260168645|ref|ZP_05755456.1| peptide chain release factor 2 [Brucella sp. F5/99] gi|260545394|ref|ZP_05821135.1| peptide chain release factor 2 [Brucella abortus NCTC 8038] gi|260563940|ref|ZP_05834426.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. 16M] gi|260754664|ref|ZP_05867012.1| peptide chain release factor 2 [Brucella abortus bv. 6 str. 870] gi|260757887|ref|ZP_05870235.1| peptide chain release factor 2 [Brucella abortus bv. 4 str. 292] gi|260761710|ref|ZP_05874053.1| peptide chain release factor 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260883690|ref|ZP_05895304.1| peptide chain release factor 2 [Brucella abortus bv. 9 str. C68] gi|261213915|ref|ZP_05928196.1| peptide chain release factor 2 [Brucella abortus bv. 3 str. Tulya] gi|261218729|ref|ZP_05933010.1| peptide chain release factor 2 [Brucella ceti M13/05/1] gi|261222099|ref|ZP_05936380.1| peptide chain release factor 2 [Brucella ceti B1/94] gi|261314339|ref|ZP_05953536.1| peptide chain release factor 2 [Brucella pinnipedialis M163/99/10] gi|261317565|ref|ZP_05956762.1| peptide chain release factor 2 [Brucella pinnipedialis B2/94] gi|261321773|ref|ZP_05960970.1| peptide chain release factor 2 [Brucella ceti M644/93/1] gi|261325021|ref|ZP_05964218.1| peptide chain release factor 2 [Brucella neotomae 5K33] gi|261758119|ref|ZP_06001828.1| peptide chain release factor 2 [Brucella sp. F5/99] gi|265984009|ref|ZP_06096744.1| peptide chain release factor 2 [Brucella sp. 83/13] gi|265988599|ref|ZP_06101156.1| peptide chain release factor 2 [Brucella pinnipedialis M292/94/1] gi|265991013|ref|ZP_06103570.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. Rev.1] gi|265994850|ref|ZP_06107407.1| peptide chain release factor 2 [Brucella melitensis bv. 3 str. Ether] gi|265998064|ref|ZP_06110621.1| peptide chain release factor 2 [Brucella ceti M490/95/1] gi|294852271|ref|ZP_06792944.1| peptide chain release factor 2 [Brucella sp. NVSL 07-0026] gi|297248263|ref|ZP_06931981.1| peptide chain release factor 2 [Brucella abortus bv. 5 str. B3196] gi|306840093|ref|ZP_07472879.1| peptide chain release factor 2 [Brucella sp. NF 2653] gi|17983020|gb|AAL52235.1| bacterial peptide chain release factor 2 (rf-2) [Brucella melitensis bv. 1 str. 16M] gi|62195991|gb|AAX74291.1| peptide release factor 2 [Brucella abortus bv. 1 str. 9-941] gi|82615885|emb|CAJ10889.1| Class I peptide chain release factor domain:Peptide chain release factor 2:PCRF domain [Brucella melitensis biovar Abortus 2308] gi|189019672|gb|ACD72394.1| Peptide chain release factor 2 [Brucella abortus S19] gi|225617409|gb|EEH14454.1| peptide chain release factor 2 [Brucella ceti str. Cudo] gi|225640794|gb|ACO00708.1| peptide chain release factor 2 [Brucella melitensis ATCC 23457] gi|237790187|gb|EEP64397.1| peptide chain release factor 2 [Brucella abortus str. 2308 A] gi|260096801|gb|EEW80676.1| peptide chain release factor 2 [Brucella abortus NCTC 8038] gi|260153956|gb|EEW89048.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. 16M] gi|260668205|gb|EEX55145.1| peptide chain release factor 2 [Brucella abortus bv. 4 str. 292] gi|260672142|gb|EEX58963.1| peptide chain release factor 2 [Brucella abortus bv. 2 str. 86/8/59] gi|260674772|gb|EEX61593.1| peptide chain release factor 2 [Brucella abortus bv. 6 str. 870] gi|260873218|gb|EEX80287.1| peptide chain release factor 2 [Brucella abortus bv. 9 str. C68] gi|260915522|gb|EEX82383.1| peptide chain release factor 2 [Brucella abortus bv. 3 str. Tulya] gi|260920683|gb|EEX87336.1| peptide chain release factor 2 [Brucella ceti B1/94] gi|260923818|gb|EEX90386.1| peptide chain release factor 2 [Brucella ceti M13/05/1] gi|261294463|gb|EEX97959.1| peptide chain release factor 2 [Brucella ceti M644/93/1] gi|261296788|gb|EEY00285.1| peptide chain release factor 2 [Brucella pinnipedialis B2/94] gi|261301001|gb|EEY04498.1| peptide chain release factor 2 [Brucella neotomae 5K33] gi|261303365|gb|EEY06862.1| peptide chain release factor 2 [Brucella pinnipedialis M163/99/10] gi|261738103|gb|EEY26099.1| peptide chain release factor 2 [Brucella sp. F5/99] gi|262552532|gb|EEZ08522.1| peptide chain release factor 2 [Brucella ceti M490/95/1] gi|262765963|gb|EEZ11752.1| peptide chain release factor 2 [Brucella melitensis bv. 3 str. Ether] gi|263001797|gb|EEZ14372.1| peptide chain release factor 2 [Brucella melitensis bv. 1 str. Rev.1] gi|263094278|gb|EEZ18139.1| peptide chain release factor 2 [Brucella melitensis bv. 2 str. 63/9] gi|264660796|gb|EEZ31057.1| peptide chain release factor 2 [Brucella pinnipedialis M292/94/1] gi|264662601|gb|EEZ32862.1| peptide chain release factor 2 [Brucella sp. 83/13] gi|294820860|gb|EFG37859.1| peptide chain release factor 2 [Brucella sp. NVSL 07-0026] gi|297175432|gb|EFH34779.1| peptide chain release factor 2 [Brucella abortus bv. 5 str. B3196] gi|306404821|gb|EFM61114.1| peptide chain release factor 2 [Brucella sp. NF 2653] gi|326408941|gb|ADZ66006.1| Peptide chain release factor 2 [Brucella melitensis M28] gi|326538654|gb|ADZ86869.1| peptide chain release factor 2 [Brucella melitensis M5-90] Length = 321 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + S + D + ++ + Sbjct: 1 MRERQQLEDSINGINHLKQTLNDSVELIAMGEEEGDKSIVEDAEKTIRDLKDEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGHNSYGMLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGAVTPFMEAALAHR 309 >gi|319405668|emb|CBI79291.1| peptide chain release factor RF-2 [Bartonella sp. AR 15-3] Length = 332 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 112/327 (34%), Positives = 164/327 (50%), Gaps = 16/327 (4%) Query: 29 VDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 + K E + ++ ++ Q+ +E +L + + N I + Sbjct: 3 WNDAQKAQDMMRERQNLEDSMNSTQLFAQRLEECIELIAMGEEENDVGIIAETENTIRQL 62 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKW 145 + + +L D LEI AG GG+E+ + L RMY R+A K Sbjct: 63 KSEIDK-----RQIEMLLSGEADSNDTYLEIHAGAGGTESQDWASMLLRMYTRWAEQHKM 117 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KVEVL + D ++ G K + G + +K ESGVHR+ R+ +++ + HTS A++ Sbjct: 118 KVEVLETHDGEEAGIKSATILVKGHNAYGLLKTESGVHRLVRISPYDSNSKRHTSFASIW 177 Query: 206 VLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQH 263 V P I+VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH Sbjct: 178 VYPVVDENIEVDLSEADVRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQH 237 Query: 264 QNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHR 320 +NR A +LRARLY+ E K+ E + K +IG G +IR+Y + + D R Sbjct: 238 KNRATAWSMLRARLYEEELKKREEETNAVEASKTEIGWG---HQIRSYVLQPYQLVKDSR 294 Query: 321 INLTLYKLEYVLQGYIDDIINPLLTAH 347 L + VL G +D I L Sbjct: 295 TGLENTDPQTVLNGDLDAFIEAALAQR 321 >gi|240949505|ref|ZP_04753845.1| peptide chain release factor 2 [Actinobacillus minor NM305] gi|240296078|gb|EER46739.1| peptide chain release factor 2 [Actinobacillus minor NM305] Length = 248 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 97/249 (38%), Positives = 143/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG F ++ E+G+HR+ R +++ R HTS A V PE E ++++ Sbjct: 61 SATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEVDEDINIEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNGRSQHQNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E + E+ K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 MEMMKQNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|195116636|ref|XP_002002858.1| GI17608 [Drosophila mojavensis] gi|193913433|gb|EDW12300.1| GI17608 [Drosophila mojavensis] Length = 393 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 116/325 (35%), Positives = 184/325 (56%), Gaps = 6/325 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 + P+++ + + ++ ++ + + D + + + ++ E+ + Sbjct: 57 RLTRLDPVVNSLEKHRALQRNITSEKDLLAEKDEDMRAL-MEEENNVYTSLLRKQEEDML 115 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D +D + I E+ AG GG EA LF +L+ MY Y W+ E D Sbjct: 116 QELLALSDDEDYPAVIFEVNAGAGGQEAMLFAQELYDMYTSYFDHMGWEYEEFDRETTDI 175 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + ++ ++ ++FE+GVHRVQRVPATE SGR+HTS A++ V+P A++ V I Sbjct: 176 GGLRHANLQVNDPEAYNWLRFEAGVHRVQRVPATEKSGRIHTSTASITVIPRPADVQVQI 235 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 D++I+T RASG+GGQHVNTTDSAVRI H+P+G+ V + SE+SQ +NR A+K L+A+ Sbjct: 236 AERDLKIETKRASGAGGQHVNTTDSAVRIVHLPSGLAVESQSERSQLKNREVALKRLQAK 295 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI--NLTLYKLEYVLQG 334 L + + + A RK Q G+ +R+E+IRTYNF Q R+TDHR+ TL+ L L+G Sbjct: 296 LIHQQLQSAEATKKATRKAQQGNLNRNEKIRTYNFVQDRVTDHRVQQGGTLHNLPGFLEG 355 Query: 335 --YIDDIINPLLTAHQAKMIGSASE 357 + +I L H+ + + E Sbjct: 356 GQQLSGLIERLQLEHRKQALMELLE 380 >gi|239907246|ref|YP_002953987.1| peptide chain release factor 2 [Desulfovibrio magneticus RS-1] gi|239797112|dbj|BAH76101.1| peptide chain release factor 2 [Desulfovibrio magneticus RS-1] Length = 285 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 108/258 (41%), Positives = 151/258 (58%), Gaps = 8/258 (3%) Query: 94 ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153 E L +D+ ILEI G GG+EA + L RMY R+A +++ V++L Sbjct: 24 ELADAELAAFFGPEDNADAILEIHPGAGGTEAQDWAEMLLRMYRRWAERKRFDVKMLDFL 83 Query: 154 DNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AE 212 D+ G K + ISG + + E G+HR+ R+ ++SGR HTS A+V V P+A + Sbjct: 84 PGDEAGVKSVTLQISGPYAYGLLAVEKGIHRLIRISPFDSSGRRHTSFASVDVYPDAGVD 143 Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 ID+++ +D+R+D RASG GGQHVN T SA+RITH+PT I+V +EKSQH+NR AMK Sbjct: 144 IDIEVKEDDLRVDVFRASGPGGQHVNKTSSAIRITHLPTNIVVQCQNEKSQHRNRETAMK 203 Query: 272 VLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKL 328 VL+ARLYD+E K++ E+ K IG G +IRTY R + DHR + + Sbjct: 204 VLKARLYDLELKKLEAEKQESYESKNAIGFG---SQIRTYTMQPYRLVKDHRTGVDAGDV 260 Query: 329 EYVLQGYIDDIINPLLTA 346 E VL G +D I L A Sbjct: 261 EAVLDGDLDKFIRGFLLA 278 >gi|187917953|ref|YP_001883516.1| peptide chain release factor 2 [Borrelia hermsii DAH] gi|119860801|gb|AAX16596.1| bacterial peptide chain release factor 2 [Borrelia hermsii DAH] Length = 353 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 106/344 (30%), Positives = 175/344 (50%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 LK + E E +++ + K E + + +KI ++ + QDL + Sbjct: 17 DKLKTQLKEYEKQINNENFWNDNKKAQEILKNQNILKAKIEPWEDLIFKLQDLRELCEIA 76 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S+ + L + E+ L K+ D + L I +G GG+EA +V Sbjct: 77 ESEEDTILLDKDINKLKEQYKHLLTI-----SYFKEDIDISNAFLTIHSGAGGTEACDWV 131 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+R+Y RY+ R +K E++ + + GG K + I G+ + +K E G+HR+ R+ Sbjct: 132 SMLYRIYLRYSERRGYKTELIDLLEAE-GGIKSVTIEIKGKYAYGFLKSEIGIHRLVRIS 190 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V + +I++ I EDIR+DT RASG+GGQHVN T SAVRITH Sbjct: 191 PFDAAKKRHTSFASVFIDPVIDDKIEIIIKPEDIRVDTYRASGAGGQHVNKTSSAVRITH 250 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK--RMANERSANRKLQIGSGDRSER 305 + TGI+ + +++SQH+N+ AMKVL+++LY+ + + ++ K I G+ + Sbjct: 251 LQTGIVTQSQTDRSQHRNKELAMKVLKSKLYEHYKALEQQKSKSKQEEKKDISWGN---Q 307 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y F + DHR + V+ G ID+ I L Sbjct: 308 IRSYIFQPYTLVKDHRTKFENPNIISVMDGNIDNFIEEYLKWKN 351 >gi|213581389|ref|ZP_03363215.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 197 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 112/195 (57%), Positives = 149/195 (76%), Gaps = 2/195 (1%) Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIR 223 A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTSA TVAV+PE E + DI D+R Sbjct: 1 AKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLR 60 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E Sbjct: 61 IDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAET 120 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P Sbjct: 121 AKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEP 180 Query: 343 LLTAHQAKMIGSASE 357 ++ HQA ++ + SE Sbjct: 181 IVQEHQADLLAALSE 195 >gi|308804958|ref|XP_003079791.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri] gi|116058248|emb|CAL53437.1| putative translation releasing factor2 (ISS) [Ostreococcus tauri] Length = 419 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 8/353 (2%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI---ISKISIYDQKKQEEQ 60 L + LK RF ++ R S + K A ++ + + +++ + + Sbjct: 65 LEIADVKGLKMRFESLDERSSAGDLWEDANKARVVMAELAGVREELDAARAFEEHVSDAK 124 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + SD+E+ ++ + ++E LE LL D +++I AG Sbjct: 125 TALELAEVGESDNEMSEMLCEAMASVEALDEALEQWELRRLLGGKYDA-LGAVVQIYAGA 183 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG +A + L RMY + R + V V + + GG K + GR + + E Sbjct: 184 GGLDAQDWTEMLERMYIGWCEKRGYGVRVTERQEGEGGGLKTATLEVDGRHAYGYLSSEK 243 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 G HR+ R TS A V V+P E +V +P D+ I TMR+SG+GGQ+VN Sbjct: 244 GTHRLVRQSPFNKDAARQTSFAAVDVIPLLQDEDEVKVPEGDLEITTMRSSGAGGQNVNK 303 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 ++AVRI H+PTGI V ++Q NR AM ++A+L + + + + R I Sbjct: 304 LETAVRIKHVPTGISVKAEEHRTQALNRQAAMLRIKAKLTALAEEARVADIAELR-GDIV 362 Query: 299 SGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + ++IR Y + D R + + VL G +D+ +N L +K Sbjct: 363 KAEWGQQIRNYVLHPYKMVKDVRTGVETSDVTRVLNGGLDEYMNGYLRWKASK 415 >gi|294675125|ref|YP_003575741.1| peptide chain release factor 2 [Prevotella ruminicola 23] gi|294472270|gb|ADE81659.1| peptide chain release factor 2 [Prevotella ruminicola 23] Length = 374 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 94/373 (25%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ R + E +LR + + E+ + I Sbjct: 1 MITQDQLKDVLERADALHRYLEIDKKKIEYEEEDLRTQAPDFWEDRKRAEEQMKKVKGIK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y + + +L + + + K I +LE + + Sbjct: 61 KWLDGYKEVRTLADELQLAFDFFKDEMVTEEEVEDTYAKAIKAIEDLEL----KNMLRQK 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D +L+I +G GG+EA + L RMY R+A +KV + + D D+ G K + Sbjct: 117 EDPMEAVLKINSGAGGTEAQDWASMLMRMYMRWAEAHGYKVTISNLLDGDEAGIKSVTMQ 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 + G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 LEGGDYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDTIEVYVDPAKLSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + T ++ + + Q +N+ RAM +L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYWYTDPDTGEEEEILIENTETRDQPKNKERAMTLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTTDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|302811530|ref|XP_002987454.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii] gi|300144860|gb|EFJ11541.1| hypothetical protein SELMODRAFT_426218 [Selaginella moellendorffii] Length = 505 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 150/306 (49%), Positives = 207/306 (67%), Gaps = 9/306 (2%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 + IK+ +E + + I K++E L ++ + D E+R LA E+ +E Sbjct: 22 EKLIKMNKELRNLDYSVDMIKALRAKEKEVIGLKELVKESVEDEEMRRLASGELQTATRE 81 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 +R+ ++++ L+PKD D + G GG EA++F DLF+MYE+YAA W+ EV Sbjct: 82 VRDAQHDVLLELIPKDEADSR--------GAGGDEASIFASDLFKMYEKYAANNSWRFEV 133 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 LS + D YKE A ISG GV+ +KFESGVHRVQRVP TE +GR+HTS A+VA+LPE Sbjct: 134 LSITTTDTRCYKEASAAISGDGVYGALKFESGVHRVQRVPVTEKAGRIHTSTASVAILPE 193 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLR 268 A EIDV+I ++I+IDT RA G+GGQHVNTT SAVR+TH PTGI+V E+SQH+N+ + Sbjct: 194 ANEIDVEIRNDEIKIDTYRAGGAGGQHVNTTCSAVRVTHAPTGIVVAIQDERSQHKNKAK 253 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 A+ +L ARLY++ER R A RS R+ QIGS DRSERIRTYNF QGR+TD R+ +T + + Sbjct: 254 ALSILYARLYELERSRAAASRSELRQDQIGSSDRSERIRTYNFPQGRVTDRRVGVTQHAI 313 Query: 329 EYVLQG 334 E +++G Sbjct: 314 EQIMEG 319 >gi|325662438|ref|ZP_08151044.1| peptide chain release factor 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086228|ref|ZP_08335310.1| peptide chain release factor 2 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471272|gb|EGC74496.1| peptide chain release factor 2 [Lachnospiraceae bacterium 4_1_37FAA] gi|330406387|gb|EGG85901.1| peptide chain release factor 2 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 316 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 97/319 (30%), Positives = 168/319 (52%), Gaps = 9/319 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ + + ++ ++ Q L + + N +S I+++ Sbjct: 1 MKELKSLQDSVKRTEELYRQYEDIQILIDMAYEENDESMIKEIETELKQIESTYEE---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + L + D + I+ + AG GG+EA +V L+RMY R+ + + EVL D Sbjct: 57 -LRIETLLSEEYDKDNAIVTLHAGAGGTEACDWVNMLYRMYNRWIESKGFTTEVLDYLDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEID 214 D G K + ++G + ++ E GVHR+ R+ ++ + TS A+ V+P+ +ID Sbjct: 116 DITGIKTVTFEVNGENAYGYLQSEKGVHRLVRISPFNSANKRQTSFASCDVVPDLEDDID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I ++++IDT RASG+GGQHVN T SA+R+TH+PTGI+V +E+SQH N+ +AM++L Sbjct: 176 IEINEDELKIDTYRASGAGGQHVNKTSSAIRLTHLPTGIVVQCQNERSQHSNKEKAMQML 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVL 332 +A+LY ++ + A + S R ++ +IR+Y + DHR N + VL Sbjct: 236 KAKLYLLKEQEQAEKVSGIR-GEVKEIGFGNQIRSYVMQPYTLVKDHRTNEESGNVTSVL 294 Query: 333 QGYIDDIINPLLTAHQAKM 351 G +D IN L AK Sbjct: 295 DGNLDPFINAYLKMRNAKK 313 >gi|306843816|ref|ZP_07476414.1| peptide chain release factor 2 [Brucella sp. BO1] gi|306275894|gb|EFM57610.1| peptide chain release factor 2 [Brucella sp. BO1] Length = 321 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + S + D + ++ + Sbjct: 1 MRERQQLEDSINGINYLKQTLNDNVELIAMGEEEGDKSIVEDAEKTIRDLKDEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGHNSYGMLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGAVTPFMEAALAHR 309 >gi|49475632|ref|YP_033673.1| peptide chain release factor 2 [Bartonella henselae str. Houston-1] gi|49238439|emb|CAF27667.1| Peptide chain release factor 2 [Bartonella henselae str. Houston-1] Length = 322 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 109/318 (34%), Positives = 160/318 (50%), Gaps = 13/318 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + E + I+ I + + +E +L + + + I D + + Sbjct: 1 MMRERQRLDDSINGIRSFTKTLEECIELIAMGEEESDIEIITDAENSIRNLKSEIDK--- 57 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 L D LE+ AG GG+E+ + L RMY R+A K KVE+L D Sbjct: 58 --RQIDALLSGEADQNDTYLEVHAGAGGTESQDWASMLLRMYMRWAEQHKMKVEILEIHD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 ++ G K + G + +K ESGVHR+ R+ +++ + HTS A++ V P I Sbjct: 116 GEEAGIKSATLLVKGHNAYGMLKTESGVHRLVRISPFDSNAKRHTSFASIWVYPVIDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR A + Sbjct: 176 EVDVSEADVRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQHKNRAIAWSM 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 LRARLY+ E K+ E + K +IG G +IR+Y + + D R + + Sbjct: 236 LRARLYEEELKKREEETNAVEASKTEIGWG---HQIRSYVLQPYQLVKDLRTGVENTDPQ 292 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +D I L Sbjct: 293 SVLNGNLDSFIEAALARR 310 >gi|114651377|ref|XP_001150094.1| PREDICTED: mitochondrial translational release factor 1 isoform 2 [Pan troglodytes] Length = 487 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 131/405 (32%), Positives = 210/405 (51%), Gaps = 53/405 (13%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIG--------------------------------------------DHNSDSEIRDLAQ 80 + + + ++++LA Sbjct: 136 MCKSRQSLALWPRLECSNVITAHFNLELLDSSSPPTSASQVAGTTGLNKQDEKQLQELAL 195 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--TGGSEAALFVGDLFRMYER 138 E I+++I L NE+ L+PK+ D ILE+ AG TGG F ++F MY+ Sbjct: 196 EERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQN 255 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV- 197 Y+ + W+ E+L+ + D GG A ISG GV+ +K+E G+HRVQR+P S R+ Sbjct: 256 YSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQ 315 Query: 198 --HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HT +V VLP+ E+DV + +D+RIDT RA G+GGQHVN TDSAVR+ HIPTG++V Sbjct: 316 RIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVV 375 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 E+SQ +N+ A +VLRARLY ++ ++ + RKLQ+G+ +SERIRTYNF+Q Sbjct: 376 ECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQD 435 Query: 315 RITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 R++DHRI + ++ L G +D +I LL + + I + Sbjct: 436 RVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAELLD 480 >gi|39935519|ref|NP_947795.1| peptide chain release factor 2 [Rhodopseudomonas palustris CGA009] gi|39649371|emb|CAE27894.1| translation peptide releasing factor RF-2 [Rhodopseudomonas palustris CGA009] Length = 322 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 95/317 (29%), Positives = 160/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +E ++ ++ I +++ + ++ + + +++ ++ R Sbjct: 1 MQERTSLEDSLTGIGKVERELTDNIEMIELGEAEGDEGIVKEAEDALKALKKEVAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D LE+ AG GG+E+ + L RMY R+A +K+E L S+ Sbjct: 57 -RELEALLSGEADRFDTYLEVHAGAGGTESQDWASMLLRMYVRWAEKHGFKIEYLEESEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K ISG + +K E+GVHR+ R+ +++ R HTS ++V + P Sbjct: 116 EEAGIKSATIQISGHNAYGWLKTEAGVHRLVRISPFDSNARRHTSFSSVQIFPVIDNSIK 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVL 273 +DI D+R+DTMR+ G+GGQHVN T+SAVR+THIPTG+ +V + +SQH+NR +A +L Sbjct: 176 IDIAESDVRVDTMRSGGAGGQHVNKTESAVRLTHIPTGVAVVCQAGRSQHKNRAQAWDML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY++E K+ K +IG G +IR+Y + + D R + Sbjct: 236 RARLYEIELKKREEQAAADQAAKTEIGWG---HQIRSYVLQPYQMVKDLRTGVQTSDTAG 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D+ + L Sbjct: 293 VLDGDLDEFMAATLAQR 309 >gi|161618874|ref|YP_001592761.1| peptide chain release factor 2 [Brucella canis ATCC 23365] gi|254704223|ref|ZP_05166051.1| peptide chain release factor 2 [Brucella suis bv. 3 str. 686] gi|260566529|ref|ZP_05836999.1| peptide chain release factor 2 [Brucella suis bv. 4 str. 40] gi|261754891|ref|ZP_05998600.1| peptide chain release factor 2 [Brucella suis bv. 3 str. 686] gi|161335685|gb|ABX61990.1| peptide chain release factor 2 [Brucella canis ATCC 23365] gi|260156047|gb|EEW91127.1| peptide chain release factor 2 [Brucella suis bv. 4 str. 40] gi|261744644|gb|EEY32570.1| peptide chain release factor 2 [Brucella suis bv. 3 str. 686] Length = 321 Score = 190 bits (482), Expect = 3e-46, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + S + D + ++ + Sbjct: 1 MRERQQLEDSINGINHLKQMLNDSVELIAMGEEEGDKSIVEDAEKTIRDLKDEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGHNSYGMLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGAVTPFMEAALAHR 309 >gi|322699423|gb|EFY91185.1| putative translation releasing factor RF-1 [Metarhizium acridum CQMa 102] Length = 800 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 111/371 (29%), Positives = 182/371 (49%), Gaps = 39/371 (10%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L ++ ++ + + + + +S + Q +DL + Sbjct: 418 QRAKALSAEHEALQKSLNAQFDSQKARRAG----ELHRVAAALSAWQQSLSSIRDLQAMA 473 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D D ++ +A+ E+ A E ++ LE ++ L P+ D C++E R G GG E Sbjct: 474 DDE-QDPDLAAIARDELQAEEAKLGSLEKNLSASLTPRHPFADMPCMIEFRPGPGGLEGR 532 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRM 176 F LF+MY+ R ++ VL D G +E + I +G + Sbjct: 533 YFTDSLFKMYKALCTRRGYRANVLKYEMADAAGDQSSSAGENPVQEAILEIQDQGAYDMF 592 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-------------DVDIPLEDIR 223 + E+G+HRVQR+P+TE+ GRVHTSA V VLP E D + ++++ Sbjct: 593 RSEAGMHRVQRIPSTESKGRVHTSAVAVWVLPSFPESSSGGEADADDPESDFYVNPQEVK 652 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVER 282 ++TMRA G+GGQHVN T+SA+R+TH+PTG V+ +SQ +NR A K+LR+R+ Sbjct: 653 VETMRARGAGGQHVNKTESAIRMTHLPTGTTVSMQDHRSQQRNREDAWKLLRSRIASQRA 712 Query: 283 KRMANERSANRKL-----QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-- 335 + +E + R QI R ++IRTYN++Q R TDHR L ++ L VL G Sbjct: 713 ELRMHEAARLRNSVLAQTQI---TRGDKIRTYNYNQDRCTDHRAGLDVHNLPDVLDGGET 769 Query: 336 IDDIINPLLTA 346 +D +++ Sbjct: 770 LDRVMDAAKEW 780 >gi|119629057|gb|EAX08652.1| mitochondrial translational release factor 1, isoform CRA_c [Homo sapiens] Length = 487 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 131/405 (32%), Positives = 210/405 (51%), Gaps = 53/405 (13%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIG--------------------------------------------DHNSDSEIRDLAQ 80 + + + ++++LA Sbjct: 136 MCKSRQSLALWPRLECSSVIIAHFNLELLDSSNPPTSASQVAGTTGLNKQDEKQLQELAL 195 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--TGGSEAALFVGDLFRMYER 138 E I+++I L NE+ L+PK+ D ILE+ AG TGG F ++F MY+ Sbjct: 196 EERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTTGGDICQQFTREIFDMYQN 255 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV- 197 Y+ + W+ E+L+ + D GG A ISG GV+ +K+E G+HRVQR+P S R+ Sbjct: 256 YSCYKHWQFELLNYTPADYGGLHHAAARISGDGVYKHLKYEGGIHRVQRIPEVGLSSRMQ 315 Query: 198 --HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HT +V VLP+ E+DV + +D+RIDT RA G+GGQHVN TDSAVR+ HIPTG++V Sbjct: 316 RIHTGTMSVIVLPQPDEVDVKLDPKDLRIDTFRAKGAGGQHVNKTDSAVRLVHIPTGLVV 375 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 E+SQ +N+ A +VLRARLY ++ ++ + RKLQ+G+ +SERIRTYNF+Q Sbjct: 376 ECQQERSQIKNKEIAFRVLRARLYQQIIEKDKRQQQSARKLQVGTRAQSERIRTYNFTQD 435 Query: 315 RITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 R++DHRI + ++ L G +D +I LL + + I + Sbjct: 436 RVSDHRIAYEVRDIKEFLCGGKGLDQLIQRLLQSADEEAIAELLD 480 >gi|254796954|ref|YP_003081791.1| peptide chain release factor 2 [Neorickettsia risticii str. Illinois] gi|254590201|gb|ACT69563.1| peptide chain release factor 2 [Neorickettsia risticii str. Illinois] Length = 334 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 96/333 (28%), Positives = 170/333 (51%), Gaps = 7/333 (2%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 EI+ + + + S I + + + + + DL +I + D E Sbjct: 2 EEIQALVDSPRLWEDQSRAQLLLKEKSQIETSLKEFRELSIQLDDLTEMIELASKDGE-- 59 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + A ++ ++E + L D C+LEI++G GG+E+ + L RMY Sbjct: 60 EGAMKDLERELLLLKEKIQKKEIECLFSGEADGNDCLLEIQSGAGGTESNDWAMMLLRMY 119 Query: 137 ERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 R+A K++V+++ + ++ G K + G+ + + E+GVHR+ R+ +A+ Sbjct: 120 TRWAEIYHKFQVQIVDKVEGEETGIKSCTLKVMGKNAYGWARTETGVHRLVRISPFDANA 179 Query: 196 RVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 + HTS A V V P EI++ I +D++IDT RASG+GGQHVN T+SAVRITH+P+ I+ Sbjct: 180 KRHTSFAKVFVSPCMEGEINISIDEKDLKIDTYRASGAGGQHVNKTESAVRITHLPSKIV 239 Query: 255 VTSSEKSQHQ-NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V S N+ A+++L++RLY++E ++ + +A R ++ G +IR+Y Sbjct: 240 VQSQSSRSQHQNKAEAIQMLKSRLYEIELRKKEEKVNAARNVEDSIG-WGYQIRSYVLHP 298 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + I D R + + VL G +D I ++ Sbjct: 299 YQMIKDLRTGHEVGNITSVLDGDLDSFIIATIS 331 >gi|257468914|ref|ZP_05633008.1| peptide chain release factor 2 [Fusobacterium ulcerans ATCC 49185] Length = 326 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 17/334 (5%) Query: 25 ESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 E + + +E I+++ + + EE+ L + +D + + Sbjct: 2 EENFWNDKRSSSAIIKEMNDEKEIVAEFKKLESEMGEEEVLIDFVEMGEADFQTELEEKH 61 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 +L + + + LL D + I+ I +G GG+EA + L+RMY R+ Sbjct: 62 MILGKDI------DHFDTRLLLDGEFDSNNAIVTIHSGAGGTEACDWADMLYRMYSRWCN 115 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +K+K+ + D G K I + GR + MK E G+HR+ R+ +A+ + HTS Sbjct: 116 EKKYKISEMDFMPGDSVGIKSITFLVEGRNAYGYMKSEKGIHRLVRISPFDANKKRHTSF 175 Query: 202 ATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V V+PE E +V+I D+RIDT RASG+GGQHVN TDSAVRITHIPTGI+V E Sbjct: 176 ASVEVMPEVDESVEVNIDAGDLRIDTYRASGAGGQHVNMTDSAVRITHIPTGIVVTCQRE 235 Query: 260 KSQHQNRLRAMKVLRARLYD--VERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +SQ NR AMK+L+++L + +++K +R + +IG G+ +IR+Y F + Sbjct: 236 RSQLNNRETAMKMLKSKLIELEMKKKEEEMKRIQGEQSEIGWGN---QIRSYVFQPYTLV 292 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR + ++ V+ G ID IN L ++ K Sbjct: 293 KDHRTSAESGNIKAVMDGDIDIFINTYLRWNKTK 326 >gi|78778568|ref|YP_396680.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9312] gi|78712067|gb|ABB49244.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus marinus str. MIT 9312] Length = 354 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 93/339 (27%), Positives = 177/339 (52%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK + E+E ++ + ++ + + +++ + D+ K D + + ++ Sbjct: 11 LKAKRRELEQISAQPEFWENQEAAKKQMLILDDVKAQLELLDKWKTFISDANASLELYSL 70 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + +E K++R+ ++ + L D + ++ I+AG GG++A +V Sbjct: 71 EPE--EEMILESQQGLKKLRDNLDKWEFERLLCGEYDKEGAVVSIKAGAGGTDAQDWVEI 128 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + + S ++ G K + I G+ + +++E G HR+ R+ Sbjct: 129 LLRMYSRWADNNQMSLIINELSQGEEAGIKSVTFEIDGKYAYGYLQYEKGTHRLVRISPF 188 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P Sbjct: 189 NANGKRQTSFAGVEVMPKLDDNISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLP 248 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 +GI V + E+SQ QN+ +AM +L+++L + +++ A E + K I +IR Y Sbjct: 249 SGISVRCTQERSQLQNKEKAMLLLKSKLLVIAKEQRAAEIADI-KGDIVEAAWGNQIRNY 307 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R +L+ VL G ++ I+ LL + Sbjct: 308 VFHPYQMVKDLRTMQETNELDSVLDGGLEPFIHELLRMN 346 >gi|323359619|ref|YP_004226015.1| protein chain release factor B [Microbacterium testaceum StLB037] gi|323275990|dbj|BAJ76135.1| protein chain release factor B [Microbacterium testaceum StLB037] Length = 370 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 103/350 (29%), Positives = 168/350 (48%), Gaps = 15/350 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + LK + D + + +S +++ + +Q DL + Sbjct: 25 DVDALKADIDRLSEEAGAPDLWDDVDNAQKVTSRLSHRQAELKRITEIEQRLDDLEVLVE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + D A+ E+ +++ I +LE + D +S ++ IR+G GG +A Sbjct: 85 LAIEMDDEDSADEARRELASLKDVIGQLEVQTL----LDGEYDSRSAVVTIRSGAGGDDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 F L RMY R+A K+ V+V+ +S + G K + + + E+G HR+ Sbjct: 141 TDFAEMLLRMYLRWAERHKYPVKVMDTSYAEGAGIKSATFEVDVPYAYGTLSVEAGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAV 244 R+ + + TS A V V+P E E DIR+D R+SG GGQ VNTTDSAV Sbjct: 201 ARISPFGGADKRQTSFAAVEVIPVMEEAVEVEVPEGDIRVDVFRSSGPGGQSVNTTDSAV 260 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG--SGD 301 RITHIPTG++V+ +EKSQ QNR AM+VL+ RL ++R+ E +A +K G + Sbjct: 261 RITHIPTGLVVSMQNEKSQIQNRAAAMRVLQTRLLLLKRE----EEAAKKKELAGTITAS 316 Query: 302 RSERIRTY-NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 +++R+Y + Q + D R + V G +D +I + + K Sbjct: 317 WGDQMRSYFLYGQQLVKDLRTGYEVGNPAVVFDGDLDGLIAAGIRWRKRK 366 >gi|321479100|gb|EFX90056.1| hypothetical protein DAPPUDRAFT_299896 [Daphnia pulex] Length = 417 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 128/357 (35%), Positives = 199/357 (55%), Gaps = 17/357 (4%) Query: 9 ICDLKNRFAE-----IELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++K +F E IE + S V+ I + Q + + Q+L Sbjct: 66 LLNIKKKFDESGFQNIESK-SGIGVVNKQ--------HIQSLAGLGGKLLQTENDLQELK 116 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D + + ++ + E +++ + +++NE+ L+L +D + I+E AG GG Sbjct: 117 ALSADDDKNGDLAKMVSEEFSQLKQILVQIQNEVLELILQEDNHQTEGIIMEFSAGVGGQ 176 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 E+ LF ++ +MY Y W E+ +D G + I+ + R++FESGVH Sbjct: 177 ESMLFCNEILQMYITYCESEGWDYELTDIEKSDLEGIRHAAICINNSDAYDRLQFESGVH 236 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE +GRVHTS VA+LP +E+ V+I +D++I+T RASG+GGQHVNTT+SA Sbjct: 237 RVQRVPKTEKAGRVHTSTVAVAILPRPSEVTVNIEQKDLKIETKRASGAGGQHVNTTESA 296 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI HIP+G++ +++SQ QNR A+ +RARL+ ++ + ++RKLQ+GS R Sbjct: 297 VRIVHIPSGVVAECQTQRSQMQNRKVAIDKIRARLFQMKIDQQLATTRSSRKLQVGSSGR 356 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSASE 357 SE+IRTYNF Q RITDHRIN T + L L+G +I L + + E Sbjct: 357 SEKIRTYNFPQDRITDHRINFTSHNLGEFLRGARPFHVLIEKLKEESYKERVFEFLE 413 >gi|304383714|ref|ZP_07366173.1| peptide chain release factor RF2 [Prevotella marshii DSM 16973] gi|304335238|gb|EFM01509.1| peptide chain release factor RF2 [Prevotella marshii DSM 16973] Length = 374 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ +++ R + E ELR + + E+ + I Sbjct: 1 MITSEQLKNVQERAEALFRYLEIDKKQIEYEEEELRTQAPDFWEDTARAQEQMKKVKGIK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y + + +L ++ + + + + K I LE + Sbjct: 61 RWLDGYAEVRTLTDELQLAFDFYHDEMVTEEEVEDDYRKAVKAIENLELMNM----LRQK 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+L+I +G GG+E+ + L RMY R+A ++ + + + D+ G K + Sbjct: 117 EDPMGCVLKINSGAGGTESQDWAQMLMRMYVRWAEAHGYRCTISNLQEGDEAGIKSVTME 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDTIEVYVDPAKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 D R+ G+GGQ+VN ++ VR+ + T ++ + + Q +NR AM++L++ Sbjct: 237 DLFRSGGAGGQNVNKVETGVRLRYQYTDPDTGEEEEILIENTESRKQLENRNNAMRLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTTDVDGVMD 353 Query: 334 GYIDDIINPLLTA 346 G ID+ I L Sbjct: 354 GKIDEFIKAYLME 366 >gi|193613150|ref|XP_001944471.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Acyrthosiphon pisum] Length = 400 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 127/312 (40%), Positives = 186/312 (59%), Gaps = 5/312 (1%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + + +S K + Q L + D E + Q E + E+++ LE E+ L+P Sbjct: 78 NVFALVSAIRSLKVDLQSLDEFEIEKEKDEEFGEQLQKEKKSHEEQLTLLELELLNSLVP 137 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D + +LEI AG GG EA +F +LF MY +A + WK EV + GG + Sbjct: 138 NENFDCEDVMLEITAGVGGQEAMIFTQELFEMYNSFAHYKGWKSEVADYCHTEMGGIRHA 197 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 +SG +S ++ E GVHRVQRVP TE SGR+HTS TVA+LP+ E+DV I D+ Sbjct: 198 CLMLSGTDCYSLLQHEGGVHRVQRVPKTEKSGRIHTSTVTVAILPQPTELDVVINDRDLV 257 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 I+T RASG+GGQHVN TDSA+R+ H PTG++V +++SQ +NR A++ LRA +Y + Sbjct: 258 IETKRASGAGGQHVNKTDSAIRMHHKPTGVIVECQTDRSQIKNRKIALQKLRAIIYKKQL 317 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 ++ + + RK Q+GS RSE+IRTYNF+Q RITDHR+ + + L L+G +D ++ Sbjct: 318 EQQQSLTRSARKQQVGSSARSEKIRTYNFNQDRITDHRLTKSFHNLVGFLEGREYLDKVV 377 Query: 341 NPLLTAHQAKMI 352 L +AK I Sbjct: 378 IEL--QERAKQI 387 >gi|71892043|ref|YP_277773.1| peptide chain release factor 2 [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71796149|gb|AAZ40900.1| peptide chain release factor 2 (RF-2) [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 348 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 101/342 (29%), Positives = 169/342 (49%), Gaps = 12/342 (3%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + F I + S + I+I DQ + DL Sbjct: 1 MIFDYDLK--IKHFKIISNELKSPGIWKNPKTAKILRQKSSSLKIFINIVDQLYKNLVDL 58 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ E ++ E+ ++ +++ + D+ +C ++I++G+GG Sbjct: 59 NDLLELTE---EYDNILLSEIHDQSIDLERTLSQLEISRMFIGKYDNSNCYIDIQSGSGG 115 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA + L RMY R+ + + +V+ S + G K + G + ++ ESGV Sbjct: 116 IEAQDWASMLLRMYLRWIDHKGFMADVIEESTGEVTGIKSATIQVIGPYAYGWLRTESGV 175 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R +++ + HTS A+V V PE I++ I ED+R D RASG+GGQHVN T+ Sbjct: 176 HRLVRKSPFDSAKKRHTSFASVFVYPELDDSINIHIRPEDLRCDVYRASGAGGQHVNRTE 235 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR--MANERSANRKLQIG 298 SAVRITHIPT I+ S++SQH+N+ +AMK LRA+LY++E ++ + + K+ I Sbjct: 236 SAVRITHIPTNIVTQCQSDRSQHKNKNQAMKQLRAKLYELELQKKNYEKKMRESNKVNIT 295 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 G+ +IR+Y R+ D R ++ VL G +DD I Sbjct: 296 WGN---QIRSYILDNSRVKDLRTGFEKRNVKAVLNGDLDDFI 334 >gi|332534752|ref|ZP_08410580.1| peptide chain release factor 2 [Pseudoalteromonas haloplanktis ANT/505] gi|332035839|gb|EGI72323.1| peptide chain release factor 2 [Pseudoalteromonas haloplanktis ANT/505] Length = 248 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 94/248 (37%), Positives = 144/248 (58%), Gaps = 7/248 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D L++++G+GG+EA + L RMY R+ + +KVE++ ++D D G K Sbjct: 1 MFSGPHDSNDAYLDLQSGSGGTEAQDWCNILLRMYLRWGEAKGFKVELVEATDGDVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 G + ++ E+GVHR+ R ++SGR HTS A+ V PE + ++DI Sbjct: 61 GATVRFVGEYAYGWLRTETGVHRLVRKSPFDSSGRRHTSFASAFVYPEIDDNIEIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVNTT+SAVRITH+PT +V +E+SQH+N+ +AMK L+A+L++ Sbjct: 121 DLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNERSQHKNKAQAMKQLKAKLFE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ E+ + K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 LELQQQNAEKQTQEDAKSDIGWG---SQIRSYVLDDARIKDLRTGVENRNTQSVLDGNLD 237 Query: 338 DIINPLLT 345 I L Sbjct: 238 KFIEASLK 245 >gi|302024124|ref|ZP_07249335.1| peptide chain release factor 2 [Streptococcus suis 05HAS68] Length = 253 Score = 190 bits (481), Expect = 4e-46, Method: Composition-based stats. Identities = 91/254 (35%), Positives = 151/254 (59%), Gaps = 8/254 (3%) Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 LL D D + ILEI G+GG+EA + L RMY+RY + + VE L D+ Sbjct: 1 MTLLLSDPYDHNNAILEIHPGSGGTEAQDWGEMLLRMYQRYGNAKGFIVETLDYQAGDEA 60 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K + + +G + +K E GVHR+ R+ +++ R HTS +V V+PE I+++I Sbjct: 61 GIKSVTLSFTGPNAYGLLKSEMGVHRLVRISPFDSAKRRHTSFTSVEVMPELDDTIEIEI 120 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRAR 276 +++++DT R+ G+GGQ+VN + VR+THIPTGI+ S+ +++Q+ NR RAMK+L+A+ Sbjct: 121 RDDEVKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVTQSTVDRTQYGNRDRAMKLLQAK 180 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQ 333 LY +E+++ A E + + K +I G +IR+Y F+ + DHR + +++ V+ Sbjct: 181 LYQLEQEKKAAEVDSLKGDKKEITWG---SQIRSYVFTPYTMVKDHRTGYEVAQVDKVMD 237 Query: 334 GYIDDIINPLLTAH 347 G +D I+ L Sbjct: 238 GDLDGFIDAYLKWR 251 >gi|317063162|ref|ZP_07927647.1| peptide chain release factor 2 [Fusobacterium ulcerans ATCC 49185] gi|313688838|gb|EFS25673.1| peptide chain release factor 2 [Fusobacterium ulcerans ATCC 49185] Length = 328 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 110/334 (32%), Positives = 175/334 (52%), Gaps = 17/334 (5%) Query: 25 ESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 E + + +E I+++ + + EE+ L + +D + + Sbjct: 4 EENFWNDKRSSSAIIKEMNDEKEIVAEFKKLESEMGEEEVLIDFVEMGEADFQTELEEKH 63 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 +L + + + LL D + I+ I +G GG+EA + L+RMY R+ Sbjct: 64 MILGKDI------DHFDTRLLLDGEFDSNNAIVTIHSGAGGTEACDWADMLYRMYSRWCN 117 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +K+K+ + D G K I + GR + MK E G+HR+ R+ +A+ + HTS Sbjct: 118 EKKYKISEMDFMPGDSVGIKSITFLVEGRNAYGYMKSEKGIHRLVRISPFDANKKRHTSF 177 Query: 202 ATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 A+V V+PE E +V+I D+RIDT RASG+GGQHVN TDSAVRITHIPTGI+V E Sbjct: 178 ASVEVMPEVDESVEVNIDAGDLRIDTYRASGAGGQHVNMTDSAVRITHIPTGIVVTCQRE 237 Query: 260 KSQHQNRLRAMKVLRARLYD--VERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RI 316 +SQ NR AMK+L+++L + +++K +R + +IG G+ +IR+Y F + Sbjct: 238 RSQLNNRETAMKMLKSKLIELEMKKKEEEMKRIQGEQSEIGWGN---QIRSYVFQPYTLV 294 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 DHR + ++ V+ G ID IN L ++ K Sbjct: 295 KDHRTSAESGNIKAVMDGDIDIFINTYLRWNKTK 328 >gi|303235160|ref|ZP_07321780.1| peptide chain release factor 2 [Finegoldia magna BVS033A4] gi|302493752|gb|EFL53538.1| peptide chain release factor 2 [Finegoldia magna BVS033A4] Length = 329 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 172/333 (51%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + ++ D K E + ++ + + YD+ +++ +++ ++ D+ + Sbjct: 2 QQETMKAGFWDDSDKAQEIFDELNSVKDDVENYDEIEEKIEEVKMMLEISKEDN--TEEY 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ K + + +E L D + I+ I AG GG+EA + L RMY R+ Sbjct: 60 EKEISKTLKNLEKNVDEFKIKTLLVGEYDRNNAIMSIHAGAGGTEAQDWAEMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +K+ ++ + + +GG K + + G + +K E GVHR+ R+ + R HT Sbjct: 120 IADKKYSYKITDYNQDTEGGIKSVSLIVQGINAYGFLKSEKGVHRLVRISPFDQQKRRHT 179 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE D+ I +D++IDT RASG+GGQHVN TDSAVRITHIPTG+ V Sbjct: 180 SFASVDVFPEIKDNHDIQIDDKDLKIDTYRASGAGGQHVNMTDSAVRITHIPTGVTVQCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQ NR AM +L A+L ++ + + + QI G +IR+Y F Sbjct: 240 TERSQIANRKYAMDMLIAKLIMIKEEEKREKIEDIQGKYNQIAWG---SQIRSYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N +++ VL G +D IN L+ + Sbjct: 297 LVKDHRTNCESSQVQDVLDGDLDKFINAYLSHN 329 >gi|289642137|ref|ZP_06474289.1| peptide chain release factor 2 [Frankia symbiont of Datisca glomerata] gi|289508100|gb|EFD29047.1| peptide chain release factor 2 [Frankia symbiont of Datisca glomerata] Length = 366 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 98/347 (28%), Positives = 158/347 (45%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R A++E ++ + +S + IS + ++ D+ + Sbjct: 24 DLDTLRRRAADLEREAADPQLWSDQDRAQAVTRRLSSVRGDISRVEALRRRLDDVIAALD 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + LA + + L D++ I+++ AG GG +AA Sbjct: 84 LGDDDLLAEAANDLPTLARDISA------LEVRTLLSGEYDERDAIVQLSAGAGGVDAAD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV +S+ ++ G K I + ++ E GVHR+ R Sbjct: 138 WTAMLLRMYLRWAERHGYAAEVFDTSEAEEAGLKSATFQIKAPYAYGTLRSEHGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V P V+I +++RID R+SG GGQ VNTTDSAVRI Sbjct: 198 ISPFDNQNRRQTSFAGVEVTPVVEQSDHVEIDDKELRIDIFRSSGPGGQGVNTTDSAVRI 257 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PT I+V +E+SQ QN+ AM VL+A+L + R A E+ + G Sbjct: 258 THLPTNIVVTCQNERSQLQNKAAAMIVLQAKLLERRRAEEAAEKQRLTGGPQDVSFG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y + + D R + VL G ID+ I+ + + Sbjct: 315 SQIRNYVLHPYQMVKDLRTEVETSGTAAVLDGDIDEFIDAEIRWRRT 361 >gi|330814308|ref|YP_004358547.1| peptide chain release factor 2 [Candidatus Pelagibacter sp. IMCC9063] gi|327487403|gb|AEA81808.1| peptide chain release factor 2 [Candidatus Pelagibacter sp. IMCC9063] Length = 312 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 101/313 (32%), Positives = 166/313 (53%), Gaps = 13/313 (4%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 +E + I++ Y ++ ++L + N ++ ++L K++ E Sbjct: 4 KEKNHLERILNDYKSYKEELTNIKELVELNTKDNDENLTKELEMS-----LKKLELKIRE 58 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 I +D+ +EI AG GG+E+ + L MY ++A + + ++S + + Sbjct: 59 IELFCFLSKKNDELDVYVEIHAGAGGTESQDWAEMLRTMYIKWAEKKSFSFSLISETKGE 118 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DV 215 + G+K I G+ + ++ ESGVHR+ R+ ++ R HTS A+V V P E V Sbjct: 119 EVGFKSSTIKIEGKYAYGFLRHESGVHRLVRISPFDSDKRRHTSFASVWVYPVVNESVVV 178 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 DI +D+RIDT R+SG+GGQHVNTTDSAVRITH PT I+V +E+SQH+N+ AM +L+ Sbjct: 179 DINDKDLRIDTYRSSGAGGQHVNTTDSAVRITHQPTNIVVQCQNERSQHKNKDTAMNMLK 238 Query: 275 ARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 ARLY++E ++ E + K IG G +IR+Y + + D R L + V Sbjct: 239 ARLYELELQKKKEESKSVESSKTDIGWG---HQIRSYVLQPYQMVKDSRTGLERTDPDKV 295 Query: 332 LQGYIDDIINPLL 344 L G+++ + L Sbjct: 296 LDGHLNPFLEESL 308 >gi|329124057|ref|ZP_08252604.1| peptide chain release factor RF2 [Haemophilus aegyptius ATCC 11116] gi|327467482|gb|EGF12980.1| peptide chain release factor RF2 [Haemophilus aegyptius ATCC 11116] Length = 283 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 159/285 (55%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + + A E+ +E+++ +LE + + D +C ++++AG+GG+EA Sbjct: 4 LAIEAEDEDTFNEAVAELDELEQQLEKLE----FRRMFSGEHDACNCYVDLQAGSGGTEA 59 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 60 QDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRL 119 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAV 244 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAV Sbjct: 120 VRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAV 179 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 180 RITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQVMEDNKSDIGWG- 238 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 239 --SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 281 >gi|169825227|ref|YP_001692838.1| peptide chain release factor B [Finegoldia magna ATCC 29328] gi|167832032|dbj|BAG08948.1| peptide chain release factor B [Finegoldia magna ATCC 29328] Length = 324 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 171/328 (52%), Gaps = 10/328 (3%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 ++ D K E + ++ + + YD+ +++ +++ ++ D+ + + E+ Sbjct: 2 KAGFWDDSDKAQEIFDELNSVKDDVENYDEIEEKIEEVKMMLEISKEDN--TEEYEKEIS 59 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 K + + +E L D + I+ I AG GG+EA + L RMY R+ A +K Sbjct: 60 KTLKNLEKNVDEFKIKTLLVGEYDRNNAIMSIHAGAGGTEAQDWAEMLLRMYTRWIADKK 119 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 + ++ + + +GG K + + G + +K E GVHR+ R+ + R HTS A+V Sbjct: 120 YSYKITDYNQDTEGGIKSVSLIVQGINAYGFLKSEKGVHRLVRISPFDQQKRRHTSFASV 179 Query: 205 AVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V PE D+ I +D++IDT RASG+GGQHVN TDSAVRITHIPTG+ V +E+SQ Sbjct: 180 DVFPEIKDNHDIQIDDKDLKIDTYRASGAGGQHVNMTDSAVRITHIPTGVTVQCQTERSQ 239 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG-RITDH 319 NR AM +L A+L ++ + + + QI G +IR+Y F + DH Sbjct: 240 IANRKYAMDMLIAKLIMIKEEEKREKIEDIQGKYNQIAWG---SQIRSYVFQPYTLVKDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N +++ VL G +D IN L+ + Sbjct: 297 RTNCESSQVQDVLDGDLDKFINAYLSHN 324 >gi|119470492|ref|ZP_01613195.1| peptide chain release factor 2 (RF-2) [Alteromonadales bacterium TW-7] gi|119446193|gb|EAW27470.1| peptide chain release factor 2 (RF-2) [Alteromonadales bacterium TW-7] Length = 283 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 101/284 (35%), Positives = 159/284 (55%), Gaps = 11/284 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + D A E+ + +++ LE + + T D L++++G+GG+EA Sbjct: 4 LAIEAEDKDTFDEANAELEGLNEQLESLE----FRRMFSGTHDANDAYLDLQSGSGGTEA 59 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ + +KVE++ ++D D G K G + ++ E+GVHR+ Sbjct: 60 QDWCNMLLRMYLRWGEAKGFKVELVEATDGDVAGIKGATVRFVGEYAYGWLRTETGVHRL 119 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++SGR HTS A+ V PE + ++DI D+RID RASG+GGQHVNTT+SAV Sbjct: 120 VRKSPFDSSGRRHTSFASAFVYPEIDDNIEIDINPSDLRIDVYRASGAGGQHVNTTESAV 179 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+PT +V +E+SQH+N+ +AMK L+A+L+++E ++ E+ + K IG G Sbjct: 180 RITHVPTNTVVQCQNERSQHKNKAQAMKQLKAKLFELELQQQNAEKQTQEDAKSDIGWG- 238 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 239 --SQIRSYVLDDSRIKDLRTGVENRNTQSVLDGNLDKFIEASLK 280 >gi|302380960|ref|ZP_07269421.1| peptide chain release factor 2 [Finegoldia magna ACS-171-V-Col3] gi|302311181|gb|EFK93201.1| peptide chain release factor 2 [Finegoldia magna ACS-171-V-Col3] Length = 329 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 104/333 (31%), Positives = 172/333 (51%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + ++ D K E + ++ + + YD+ +++ +++ ++ D+ + Sbjct: 2 QQETMKAGFWDDSDKAQEIFDELNSVKDDVENYDEIEEKIEEVKMMLEISKEDN--TEEY 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ K + + +E L D + I+ I AG GG+EA + L RMY R+ Sbjct: 60 EKEISKTLKNLEKNVDEFKIQTLLVGEYDRNNAIMSIHAGAGGTEAQDWAEMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +K+ ++ + + +GG K + + G + +K E GVHR+ R+ + R HT Sbjct: 120 IADKKYSYKITDYNQDTEGGIKSVSLIVQGINAYGFLKSEKGVHRLVRISPFDQQKRRHT 179 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE D+ I +D++IDT RASG+GGQHVN TDSAVRITHIPTG+ V Sbjct: 180 SFASVDVFPEIKDNHDIQIDDKDLKIDTYRASGAGGQHVNMTDSAVRITHIPTGVTVQCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQ NR AM +L A+L ++ + + + QI G +IR+Y F Sbjct: 240 TERSQIANRKYAMDMLIAKLIMIKEEEKREKIEDIQGKYNQIAWG---SQIRSYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N +++ VL G +D IN L+ + Sbjct: 297 LVKDHRTNCESSQVQDVLDGDLDKFINAYLSHN 329 >gi|254701680|ref|ZP_05163508.1| peptide chain release factor 2 [Brucella suis bv. 5 str. 513] gi|261752232|ref|ZP_05995941.1| peptide chain release factor 2 [Brucella suis bv. 5 str. 513] gi|261741985|gb|EEY29911.1| peptide chain release factor 2 [Brucella suis bv. 5 str. 513] Length = 321 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 105/317 (33%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + S + D + ++ + Sbjct: 1 MRERQQLEDSINGINHLKQTLNDSVELIAMGEEEGDKSIVEDAEKTIRDLKDEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGHNSYGMLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGAVTPFMEAALDHR 309 >gi|218461792|ref|ZP_03501883.1| peptide chain release factor 2 [Rhizobium etli Kim 5] Length = 320 Score = 189 bits (480), Expect = 5e-46, Method: Composition-based stats. Identities = 101/317 (31%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + +Q+ + +L + + S +++ + R Sbjct: 1 MRERQQLDDGINGVKQLEQQLNDNIELIELGEEEGDQSVVKEAEDTLKALKAEAAR---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + D LE+ +G GG+E+ + L RMY R+A +++KVE+L D Sbjct: 57 -RQVEAMLSGEADGNDTYLEVHSGAGGTESQDWANMLLRMYTRWAERQRFKVELLEVHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS +++ V P I Sbjct: 116 EEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFSSIWVYPVVDDSIQ 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+NR +A +L Sbjct: 176 IEINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRAKAWDML 235 Query: 274 RARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RAR+Y+ E K+ + +A K IG G +IR+Y + + D R + + Sbjct: 236 RARMYEAELKKREDAANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVASTAPDD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +++ + L Sbjct: 293 VLDGDLNEFMEAALAHR 309 >gi|257464973|ref|ZP_05629344.1| peptide chain release factor 2 [Actinobacillus minor 202] gi|257450633|gb|EEV24676.1| peptide chain release factor 2 [Actinobacillus minor 202] Length = 248 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 96/249 (38%), Positives = 142/249 (57%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D C ++++AG+GG+EA + L RMY R+A + +K E++ SD D G K Sbjct: 1 MFSGQHDAADCYVDLQAGSGGTEAQDWTEMLLRMYLRWAESKGFKTELIEVSDGDVAGLK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG F ++ E+G+HR+ R +++ R HTS A V PE E ++++ Sbjct: 61 SATIRVSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFAAAFVYPEVDEDINIEVNPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITHIP+ I+V + +SQHQN+ +AMK L+A+LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNKTESAVRITHIPSCIVVQCQNGRSQHQNKDQAMKQLKAKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E + E+ K IG G +IR+Y RI D R + + VL G +D Sbjct: 181 MEMMKQNAEKQAMEESKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLD 237 Query: 338 DIINPLLTA 346 I L A Sbjct: 238 KFIEASLKA 246 >gi|167470794|ref|ZP_02335498.1| peptide chain release factor 1 [Yersinia pestis FV-1] Length = 303 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 140/305 (45%), Positives = 201/305 (65%), Gaps = 9/305 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L+ R E+ + ++ + D + L+ EYA ++ + + + Sbjct: 1 MKSSIVAKLEALQERHEEVLAYLGDASVIADQDRFRALSREYAQLTDVTRCFKEWRSAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D E+R++AQ E+ + ELE ++ LLLPKD DD++ C LEIR Sbjct: 61 DIEAAEMML----DDLEMREMAQEELKIAKARSEELEQQLQVLLLPKDPDDERDCFLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GD+FRMY RYA R+WKVE++S+S+ + GGYKEI+A ISG GVF ++K Sbjct: 117 AGTGGDEAAIFAGDMFRMYSRYAETRRWKVEIMSASEGEHGGYKEIIAKISGDGVFGQLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+P E + +I D+RIDT R+SG+GGQH Sbjct: 177 FESGGHRVQRVPETESQGRIHTSACTVAVMPAIPEAELPEINAGDLRIDTFRSSGAGGQH 236 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSA+RITHIPTGI+V E+SQH+N+ +AM VL AR+ E ++ ++ R+ Sbjct: 237 VNTTDSAIRITHIPTGIVVECQDERSQHKNKAKAMSVLGARIRAAEMQKRQLAEASERRN 296 Query: 296 QIGSG 300 +G+G Sbjct: 297 LLGTG 301 >gi|327398507|ref|YP_004339376.1| peptide chain release factor 2 [Hippea maritima DSM 10411] gi|327181136|gb|AEA33317.1| peptide chain release factor 2 [Hippea maritima DSM 10411] Length = 359 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 111/353 (31%), Positives = 181/353 (51%), Gaps = 19/353 (5%) Query: 7 KQICDLKN---------RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 +I +K +I+ ++ +S + Y L S I K+ ++ + Sbjct: 10 DKINKIKEYLDPPKRKKELDDIQKQLEDSSVWNDYQLLQNLKRKQSSIEQKLKTVEELEN 69 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + L + D + + + + K++ + E D + I+ I Sbjct: 70 DVDTLLELSEFVEDDESYKQELEDNIKELTKKVEKAET----ETFLSGEHDFSNAIVTIH 125 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 +G GG+E+ +V LFRMY + ++K+EV+ D+ GYK I +SG + +K Sbjct: 126 SGAGGTESCDWVSMLFRMYSMWCDNNEYKIEVMDLQPGDEAGYKSITFLVSGEKAYGYLK 185 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQH 236 E+GVHR+ R+ +A+ R HTS A+V+VLPE + ++DI +D++IDT RASG+GGQH Sbjct: 186 NENGVHRLVRISPFDANKRRHTSFASVSVLPEINDDTEIDIDPKDLKIDTFRASGAGGQH 245 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN TDSA+RITHIPTGI+V +E+SQH+N+ A+K+L+A+LY +E ++ E Sbjct: 246 VNKTDSAIRITHIPTGIVVSCQNERSQHKNKAFALKILKAKLYQLEEEKKKKELEKLEGE 305 Query: 296 QIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE--YVLQGYIDDIINPLLT 345 + + +IR+Y + DHR + + VL G IDD I L Sbjct: 306 KKKI-EWGSQIRSYVLHPYKMVKDHRTGVEKKDVAALAVLNGEIDDFIREALK 357 >gi|203284000|ref|YP_002221740.1| peptide chain release factor RF-2 [Borrelia duttonii Ly] gi|201083443|gb|ACH93034.1| peptide chain release factor RF-2 [Borrelia duttonii Ly] Length = 347 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 178/344 (51%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +K + + E +++ + + E + + +KI ++ + +DL + Sbjct: 11 DKIKIQLQKYEKQINNENFWNDNKRAQEILKNQNILKTKIEPWENLICQLKDLRELCKIA 70 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S+ + L + E+ L L K+ D S L I +G GG+EA +V Sbjct: 71 ESEDDKALLERDVNKLREQYKHIL-----TLSYFKEDIDINSAFLTIHSGAGGTEACDWV 125 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+R Y RY+ R +K+E++ +++ GG K + I G+ + +K E G+HR+ R+ Sbjct: 126 NMLYRTYLRYSERRGYKIELIDLLESE-GGIKSVTIEIKGKYAYGFLKSEVGIHRLVRIS 184 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V + +I++ I EDIR+DT RASG+GGQHVN T SAVRITH Sbjct: 185 PFDAAKKRHTSFASVFIDPVIDDKIEIIIKPEDIRVDTYRASGAGGQHVNKTSSAVRITH 244 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDRSER 305 + TGI+ + +++SQH+N+ AMKVL+++LY+ + ++ ++ K I G+ + Sbjct: 245 LKTGIVTQSQTDRSQHRNKELAMKVLKSKLYEHYKTLEQQKSKSKQQEKKDISWGN---Q 301 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y F + DHR + V+ G ID+ I L Sbjct: 302 IRSYIFQPYTLVKDHRTKFENPNIMSVMDGNIDNFIEEYLKWKN 345 >gi|68249758|ref|YP_248870.1| peptide chain release factor 2 [Haemophilus influenzae 86-028NP] gi|68057957|gb|AAX88210.1| peptide chain release factor 2 [Haemophilus influenzae 86-028NP] gi|301169953|emb|CBW29557.1| peptide chain release factor 2 [Haemophilus influenzae 10810] Length = 283 Score = 189 bits (479), Expect = 6e-46, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 158/285 (55%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + + A E+ +E+++ +LE + + D C ++++AG+GG+EA Sbjct: 4 LAIEAEDEDTFNEAVAELDELEQQLEKLE----FRRMFSGEHDACDCYVDLQAGSGGTEA 59 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + +K E++ SD D G K +SG F ++ E+G+HR+ Sbjct: 60 QDWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIKVSGEYAFGWLRTETGIHRL 119 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAV 244 R +++ R HTS + V PE + D+RID RASG+GGQHVN T+SAV Sbjct: 120 VRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRIDVYRASGAGGQHVNKTESAV 179 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ ++ + K IG G Sbjct: 180 RITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQKKNADKQAMEDNKSDIGWG- 238 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L A Sbjct: 239 --SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEASLKA 281 >gi|126695538|ref|YP_001090424.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9301] gi|126542581|gb|ABO16823.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT 9301] Length = 354 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 94/339 (27%), Positives = 176/339 (51%), Gaps = 6/339 (1%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 LK + E+E ++ + + ++ + + +++ + D+ K D + + ++ Sbjct: 11 LKAKRRELEQISAQPEFWENQEEAKKQMLILDDVKAQLELLDKWKTFISDANASLELYSL 70 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + E + +E K++RE ++ + L D + ++ I AG GG++A +V Sbjct: 71 EPE--EEMILESKQGLKKLRENLDKWEFERLLCGEYDKEGAVVSINAGAGGTDAQDWVEI 128 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+A + + + S ++ G K + I G+ + ++ E G HR+ R+ Sbjct: 129 LLRMYSRWADNNQMSLIINELSQGEEAGIKSVTFEIDGKYAYGYLQHEKGTHRLVRISPF 188 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI H+P Sbjct: 189 NANGKRQTSFAGVEVMPKLDDNISLDIPEKDLEITTSRSGGAGGQNVNKVETAVRIVHLP 248 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 +GI V + E+SQ QN+ +AM +L+++L + +++ A E + K I +IR Y Sbjct: 249 SGISVRCTQERSQLQNKEKAMLLLKSKLLVIAKEQRAAEVADI-KGDIVEAAWGNQIRNY 307 Query: 310 NFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 F + + D R +L+ VL G ++ I+ LL + Sbjct: 308 VFHPYQMVKDLRTMQETNELDSVLDGGLEPFIHELLRMN 346 >gi|68486252|ref|XP_712983.1| hypothetical protein CaO19.8883 [Candida albicans SC5314] gi|46434408|gb|EAK93818.1| hypothetical protein CaO19.8883 [Candida albicans SC5314] Length = 394 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 125/350 (35%), Positives = 197/350 (56%), Gaps = 17/350 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ E+ ++++ D +K + + I+S + QE +L + Sbjct: 52 QRAQTIQQEHKELSEKLADKYIPDLQMK----FDNYTNILSMFGKLETLTQEYIELTEIT 107 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + E ++ + V +I +L +E+ L P +K CI+E+R G GG+EA+ Sbjct: 108 DDPDLYKEAQEELKSIV---IPQIEKLVSELRVKLRPPVKYANKGCIIELRPGVGGNEAS 164 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF GDL MY +A+ WK +++S N G E + +I G + M+ ESGVHRVQ Sbjct: 165 LFTGDLLNMYMNFASEMNWKYKIISEGKNSSGFINEAILSIDTLGSYDIMRHESGVHRVQ 224 Query: 187 RVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVN 238 R+P TE GRVHTS A V VLP+ + + ++RIDTMRA G GGQHVN Sbjct: 225 RIPETETKGRVHTSTAAVVVLPKLSEGNESSLKDDERVFAPGEVRIDTMRAGGKGGQHVN 284 Query: 239 TTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVR+ HIPTG+ ++ E+SQ N+ +A +LR+RL E++ ++ R Q+ Sbjct: 285 TTDSAVRLLHIPTGMIVIQQDERSQPLNKAKAFAILRSRLAQKEQEEEMLKQKKLRTDQV 344 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTA 346 S DRS++I+TYN+ + R+TDHRIN +++ LE VL+G + +I+ + Sbjct: 345 SSTDRSDKIKTYNYKENRVTDHRINYSMHDLEGVLEGRKLGQLIDVYRSQ 394 >gi|226945982|ref|YP_002801055.1| peptide chain release factor 2 [Azotobacter vinelandii DJ] gi|226720909|gb|ACO80080.1| peptide chain release factor 2 [Azotobacter vinelandii DJ] Length = 280 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 102/284 (35%), Positives = 154/284 (54%), Gaps = 11/284 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +D + EV + + +LE + + D ++ L+++AG+GG+EA Sbjct: 1 MAVEENDEGAANDVAAEVERLRGILEKLE----FRRMFSGEMDARNAYLDVQAGSGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + E++ S+ + G K + G F ++ E GVHR+ Sbjct: 57 QDWANMLLRMYLRWADKHGFDTEIVELSEGEVAGIKSATVHVRGEYAFGWLRTEIGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS + V PE I++DI D+R+DT R+SG+GGQHVNTTDSAV Sbjct: 117 VRKSPFDSGNRRHTSFSAVFASPEVDDNIEIDINPADLRVDTYRSSGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM--ANERSANRKLQIGSGD 301 RITH+PT +V +E+SQH NR RAMK+LRA+LY++E + A + + K IG G Sbjct: 177 RITHLPTNTVVSCQNERSQHANRDRAMKMLRAKLYELEVMKRNVAAQALEDTKSDIGWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y Q RI D R + + VL G +D+ I L Sbjct: 236 --HQIRSYVLDQSRIKDLRTGIENSNCDAVLDGDLDEFIEASLK 277 >gi|163843187|ref|YP_001627591.1| peptide chain release factor 2 [Brucella suis ATCC 23445] gi|163673910|gb|ABY38021.1| peptide chain release factor 2 [Brucella suis ATCC 23445] Length = 321 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 104/317 (32%), Positives = 157/317 (49%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ I+ Q + +L + + S + + ++ + Sbjct: 1 MRERQQLEDSINGINHLKQMLNDSVELIAMGEEEGDKSIVEGAEKTIRDLKDEI-----D 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A KVEV+ + Sbjct: 56 RRQIDMLLSGEADANDTYLEVHAGAGGTESQDWASMLLRMYTRWAERNGRKVEVMEVHEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G+ + +K ESGVHR+ R+ +++ R HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGQNSYGMLKTESGVHRLVRISPYDSNARRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 V + D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR +A +L Sbjct: 176 VQVTEADVRIDTYRASGAGGQHVNTTDSAVRITHIATGIVVQCQAERSQHKNREKAWSML 235 Query: 274 RARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ A K IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEATDAANATKTDIGWG---HQIRSYVLQPYQLVKDLRTGVESTNPQE 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G + + L Sbjct: 293 VLDGAVTPFMEAALAHR 309 >gi|33860740|ref|NP_892301.1| peptide chain release factor 2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633682|emb|CAE18639.1| peptide chain release factor RF-2 [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 373 Score = 189 bits (479), Expect = 7e-46, Method: Composition-based stats. Identities = 96/343 (27%), Positives = 172/343 (50%), Gaps = 6/343 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +L + E+E ++ + + + ++ + D+ K D + Sbjct: 26 DVPNLVAKKKELEQIAAQPEFWGNQADAKKHMLNLDDVRDQLQLLDKWKMFISDAEASLE 85 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 ++ + E + +E +RE ++ + L D ++ I+ I AG GG++A Sbjct: 86 LYSLEPE--EEMIVESHQGLVTLRENLDKWEFQRLLCGEYDKEAAIVSINAGAGGTDAQD 143 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 +V L RMY R+ +E+ SD ++ G K + ++G+ + ++ E G HR+ R Sbjct: 144 WVEILLRMYSRWVDNNGMSLEITDLSDGEEAGIKSVTFEVNGKYAYGYLQNEKGTHRLVR 203 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + A+G+ TS A V V+P+ I +DIP +D+ I T R+ G+GGQ+VN ++AVRI Sbjct: 204 ISPFNANGKRQTSFAGVEVMPKLDQSISLDIPDKDLEITTSRSGGAGGQNVNKVETAVRI 263 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 H+P+GI V + E+SQ QN+ +AM +L+A+L + +++ A+E S K I + Sbjct: 264 VHLPSGIAVRCTQERSQLQNKEKAMLLLKAKLLVIAKEQRASEISDI-KGDIVEAAWGNQ 322 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 IR Y F + + D R L+ VL G +D I+ LL + Sbjct: 323 IRNYVFHPYQMVKDLRTMKETNDLDAVLNGGLDQFIHELLRMN 365 >gi|297588165|ref|ZP_06946809.1| peptide chain release factor RF2 [Finegoldia magna ATCC 53516] gi|297574854|gb|EFH93574.1| peptide chain release factor RF2 [Finegoldia magna ATCC 53516] Length = 329 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 103/333 (30%), Positives = 171/333 (51%), Gaps = 10/333 (3%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 + + D K + ++ I + + YD+ +++ +++ ++ D+ + Sbjct: 2 QQETLKQGFWDDSDKAQAIFDELNSIKADVENYDEIEEKIEEVKMMLEISKEDN--TEEY 59 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ K + E +E L D + I+ I AG GG+EA + L RMY R+ Sbjct: 60 EKEISKTLKSLEEKVDEFKIKTLLVGEYDKNNAIMSIHAGAGGTEAQDWAEMLLRMYTRW 119 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A +K+ ++ + + +GG K + + G + +K E GVHR+ R+ + R HT Sbjct: 120 IADKKYSYKITDYNQDTEGGIKSVSLIVQGINAYGFLKSEKGVHRLVRISPFDQQKRRHT 179 Query: 200 SAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V PE ++ I +D+++DT RASG+GGQHVN TDSAVRITHIPTG+ V Sbjct: 180 SFASVDVFPEIKDSHNIQIDDKDLKVDTYRASGAGGQHVNMTDSAVRITHIPTGVTVQCQ 239 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYNFSQG- 314 +E+SQ NR AM +L A+L ++ + + + QI G +IR+Y F Sbjct: 240 TERSQIANRKYAMDMLIAKLIMIKEEEKREKIEDIQGKYNQIAWG---SQIRSYVFQPYT 296 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + DHR N +++ VL G +D IN L+ + Sbjct: 297 LVKDHRTNFESSQVQDVLDGDLDKFINAYLSHN 329 >gi|111220808|ref|YP_711602.1| peptide chain release factor 2 [Frankia alni ACN14a] gi|111148340|emb|CAJ60012.1| peptide chain release factor RF-2 [Frankia alni ACN14a] Length = 369 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 97/347 (27%), Positives = 154/347 (44%), Gaps = 14/347 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R E+E + ++ + +S IS + ++ Sbjct: 27 DVEGLRRRAEELERQAADPDLWSDQDRAQVVTRRLSSTRGDISRVEGLRRRLD------D 80 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D E A + + + L D++ I+++ AG GG +AA Sbjct: 81 IAAAADLGDDDLLAEAAADLPALNGDISALEVRTLLSGEFDERDAIVQLSAGAGGVDAAD 140 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV +S+ ++ G K + + ++ E GVHR+ R Sbjct: 141 WTAMLLRMYLRWAERHGYPTEVFDTSEAEEAGLKSATFQVKAPYAYGTLRSEHGVHRLVR 200 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V P VDI +D+RID R+SG GGQ VNTTDSAVRI Sbjct: 201 ISPFDNQNRRQTSFAGVEVTPVVELSDHVDIDDKDLRIDIFRSSGPGGQGVNTTDSAVRI 260 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PT I+V +E+SQ QN+ AM VL+A+L + R A + + G Sbjct: 261 THLPTNIVVTCQNERSQLQNKAAAMIVLQAKLLERRRAEEAAAKQRITGGPQDVSFG--- 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y + + D R + VL G +D+ I+ + +A Sbjct: 318 SQIRNYVLHPYQLVKDLRTDTETSNTGGVLDGELDNFIDAEIRWRRA 364 >gi|12321742|gb|AAG50902.1|AC069159_3 peptide chain release factor 2, putative [Arabidopsis thaliana] Length = 524 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 102/361 (28%), Positives = 171/361 (47%), Gaps = 35/361 (9%) Query: 10 CDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 L R + +++S D K++ E+ +++ + + ++++ E D+ + Sbjct: 133 KKLLVRLKVLSAELNKSDLWDDPTHAGKISREHGSLTGKMKGVMTFERELLEHIDMLKLA 192 Query: 67 GDHNSDS-----------------------EIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + N + + E L ++R + E L Sbjct: 193 KEENDSELESVGVLALISQTLGMFSFSVSVSLGMINPKETLKALIDMRRVSKEKELEALL 252 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 +D SC +E++AG GG+E+ + + MY+ +A RK+ V V+ + + G K Sbjct: 253 SADNDPCSCYIEVQAGAGGTESNDWAAMVMEMYKTWAQRRKFSVTVVDEAPGEIAGIKRA 312 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLED 221 ++G + K E GVHR+ R+ ++ R HTS A VAV+P V+I D Sbjct: 313 TIKVNGEYAYGYAKAEVGVHRLVRISPFDSGKRRHTSFAAVAVIPILGDGSTRVEINDSD 372 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RI+ R+ G+GGQH NTTDSAVRI HIPTGI +E+SQH N+ AM VL++RL + Sbjct: 373 LRIERFRSGGAGGQHANTTDSAVRIVHIPTGITATCQNERSQHSNKASAMAVLQSRLDQL 432 Query: 281 ERKRMANERSANRKL--QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYID 337 E R + + + +I G+ +IRTY R + D R N + + VL+G +D Sbjct: 433 EMARQTAMNAQHTQSLTEISWGN---QIRTYVLHPYRMVKDLRTNYEVSDPDSVLEGDLD 489 Query: 338 D 338 + Sbjct: 490 E 490 >gi|203287543|ref|YP_002222558.1| peptide chain release factor RF-2 [Borrelia recurrentis A1] gi|201084763|gb|ACH94337.1| peptide chain release factor RF-2 [Borrelia recurrentis A1] Length = 347 Score = 188 bits (478), Expect = 8e-46, Method: Composition-based stats. Identities = 104/344 (30%), Positives = 177/344 (51%), Gaps = 14/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +K + + E +++ + + E + + +KI + + +DL + Sbjct: 11 DKIKIQLQKYEKQINNENFWNDNKRAQEILKNQNILKTKIEPWKNLICQLKDLRELCKIA 70 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 S+ + L + E+ L L K+ D S L I +G GG+EA +V Sbjct: 71 ESEDDKAILERDVNKLREQYKHIL-----TLSYFKEDIDINSAFLTIHSGAGGTEACDWV 125 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L+R Y RY+ R +K+E++ +++ GG K + I G+ + +K E G+HR+ R+ Sbjct: 126 NMLYRTYLRYSERRGYKIELIDLLESE-GGIKSVTIEIKGKYAYGFLKSEVGIHRLVRIS 184 Query: 190 ATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 +A+ + HTS A+V + +I++ I EDIR+DT RASG+GGQHVN T SAVRITH Sbjct: 185 PFDAAKKRHTSFASVFIDPVIDDKIEIIIKSEDIRVDTYRASGAGGQHVNKTSSAVRITH 244 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER--KRMANERSANRKLQIGSGDRSER 305 + TGI+ + +++SQH+N+ AMKVL+++LY+ + ++ ++ K I G+ + Sbjct: 245 LKTGIVTQSQTDRSQHRNKELAMKVLKSKLYEHYKTLEQQKSKSKQQEKKDISWGN---Q 301 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y F + DHR + V+ G ID+ I L Sbjct: 302 IRSYIFQPYTLVKDHRTKFENPNIMSVMDGNIDNFIEEYLKWKN 345 >gi|149050029|gb|EDM02353.1| rCG37077, isoform CRA_a [Rattus norvegicus] Length = 436 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 105/359 (29%), Positives = 179/359 (49%), Gaps = 19/359 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLT-EEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + + ++ + + + + + +A ++P+++ + +Q ++L + Sbjct: 77 QKYMEGLNDEYQSLDQCLQDISEDEGDRRASHRRHAELAPLVAVYQEIQEAEQAIEELES 136 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG----T 120 + N E + + + + L + + + T Sbjct: 137 MCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLEHLVPKEKCDRSNVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + W+ E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSYYKHWRFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + D+R+DT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPRDLRVDTFRARGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 NTTD V + E+SQ +N+ A++VLRARLY ++ ++ RKLQ+ Sbjct: 317 NTTDRLV---------VECQQERSQLKNKEIALRVLRARLYQQIIEKDKCQQQNARKLQV 367 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 G+ +SERIRTYNF+Q R+TDHRI + ++ L+G +D +I LL + + I Sbjct: 368 GTRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAIAE 426 >gi|148703820|gb|EDL35767.1| mitochondrial translational release factor 1, isoform CRA_b [Mus musculus] Length = 440 Score = 188 bits (478), Expect = 9e-46, Method: Composition-based stats. Identities = 124/336 (36%), Positives = 197/336 (58%), Gaps = 10/336 (2%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + S + L +A ++P+ + + +Q ++L + Sbjct: 95 QKYMEDLNKEYQTLDQCLQGISENEGDRRALHRRHAQLAPLAAVYQEIQEAEQAIEELES 154 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++L E I+++I L +E+ L+PK+ D ILE+ +G T Sbjct: 155 LCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLERLVPKEKYDWSDVILEVTSGRTT 214 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 215 GGDICQQFTREIFDMYQNYSYYKHWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 274 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+R+DT RA G+GGQHV Sbjct: 275 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHV 334 Query: 238 NTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 NTTDSAVR+ HIPTG++V E+SQ +N+ A++VLRARLY ++ ++ RKLQ Sbjct: 335 NTTDSAVRLVHIPTGLVVECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQ 394 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 +G+ +SERIRTYNF+Q R+TDHRI + + V+ Sbjct: 395 VGTRAQSERIRTYNFTQDRVTDHRIAYEVRDI-KVM 429 >gi|91202802|emb|CAJ72441.1| strong similarity to protein chain release factor 2 (RF-2) [Candidatus Kuenenia stuttgartiensis] Length = 316 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 103/307 (33%), Positives = 162/307 (52%), Gaps = 13/307 (4%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 + + +E + L ++ D SD ++ +++ +LE + D Sbjct: 3 LQELQKTYEEIEFLVDLM-DEESDERTTAEIVGDIALFTQKLEKLELHTM----LGEAHD 57 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + L I AG GG+E+ +V LFRMY R+A + ++ S ++ G K I I Sbjct: 58 HCNAYLSIYAGAGGTESCDWVSMLFRMYSRWAEKNGHTLSLIDSLAGEEAGLKRITVLIE 117 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTM 227 G V+ +K E GVHR+ R+ +++ R HTS A V VLP E +++I ++++DT Sbjct: 118 GEYVYGHLKSEIGVHRLVRISPFDSNARRHTSFAAVDVLPEIEEEEEIEINDNELQVDTY 177 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG+GGQHVN T SAVRITH+PTGI++ SE+SQHQNR RA+ +L+A++Y ++ K Sbjct: 178 RSSGAGGQHVNKTSSAVRITHLPTGIVIACQSERSQHQNRRRAINMLKAKIYQIKEKEKE 237 Query: 287 NERSA--NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPL 343 E SA + K +I G+ +IR+Y + D R + +L G I+ I Sbjct: 238 RELSAAYDEKGEIAWGN---QIRSYVLQPYSLVKDLRTGKESGNTQAMLDGEIEGFIEAY 294 Query: 344 LTAHQAK 350 L AK Sbjct: 295 LKWKMAK 301 >gi|195398186|ref|XP_002057705.1| GJ17953 [Drosophila virilis] gi|194141359|gb|EDW57778.1| GJ17953 [Drosophila virilis] Length = 393 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 121/354 (34%), Positives = 196/354 (55%), Gaps = 12/354 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ + + R++ + + Y +L+ + P+++ + + ++ + + Sbjct: 35 LESLRQEYYAL--RVNAAGNSSLYARLSR----LDPVVNSLEKHRALQRNITPEQDLAAE 88 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + + E ++ E + LL D +D S I E+ AG GG EA LF Sbjct: 89 KDEDMRAL-MLEENNVYAELLRKQEEAMLQELLALADHEDYPSLIFEVNAGAGGQEAMLF 147 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L+ MY Y W+ E + D GG + ++ ++ +++E+GVHRVQRV Sbjct: 148 AQELYDMYTSYFEHMGWEYEQYAHETTDIGGLRYANLLVNDPEAYNWLRYEAGVHRVQRV 207 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 PATE SGR+HTS A++ V+P A++ V I D++I+T RASG+GGQHVNTTDSAVRI H Sbjct: 208 PATEKSGRMHTSTASITVIPRPADVQVHIAERDLKIETKRASGAGGQHVNTTDSAVRIVH 267 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG+ V + SE+SQ +NR A+K L+A+L + + + A RK Q G+ +R+E+IR Sbjct: 268 LPTGLAVESQSERSQLKNRELALKRLQAKLMQQQLESSEATKQATRKAQQGNLNRNEKIR 327 Query: 308 TYNFSQGRITDHRI--NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSASE 357 TYNF Q R+TDHR+ T + L L+G + D+I L + + E Sbjct: 328 TYNFVQDRVTDHRVQQGGTQHNLSGFLEGGQPLSDLIERLHLEQRKLKLVELIE 381 >gi|158300556|ref|XP_320444.4| AGAP012082-PA [Anopheles gambiae str. PEST] gi|157013216|gb|EAA00433.4| AGAP012082-PA [Anopheles gambiae str. PEST] Length = 384 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 131/356 (36%), Positives = 195/356 (54%), Gaps = 13/356 (3%) Query: 4 LSHKQICDLKNRFAEIE---LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +S +I R +E L++ E + ++ +S ++ Sbjct: 25 ISDDKIQKYLERLR-LEYYALKVQEQRTRKDIQRML----LLSNVVEMYEQRKIIVDNLS 79 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 L + D D ++ L + R +N +L D +D S I+E+ AG Sbjct: 80 SLKEL-KDDKDDEMVQLLKEEREAYGSILFRLDSEILNGILSMDDEEDYGSLIMEVTAGV 138 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EA LF +LF MY Y + W+VE+L + + D GG + ISG + +K E Sbjct: 139 GGQEAMLFARELFDMYCGYVEYKGWEVEMLQTENTDIGGTRHATTVISGPDAYRYLKHEG 198 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQR+PATE SGR+HTS TV+++P + V++ +D++I+T RASG+GGQHVNTT Sbjct: 199 GVHRVQRIPATEKSGRIHTSTVTVSIIPRPDDFQVELKEKDLKIETKRASGAGGQHVNTT 258 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 DSAVRI H+PTGI V +E+SQ +NR A + L A+L +E + + A +K Q+G Sbjct: 259 DSAVRIVHLPTGIAVECQTERSQQKNREIAKQKLTAKLMQIELEARFSSTQALKKSQVGQ 318 Query: 300 GDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 R+E+IRTYNF+Q RITDHRI T + L+ L+G +DD+I L + + K + Sbjct: 319 SLRNEKIRTYNFNQDRITDHRIEGGTAHNLKGFLEGGEQLDDMIEKLRRSQRRKQL 374 >gi|296387792|ref|ZP_06877267.1| putative peptide chain release factor 2 [Pseudomonas aeruginosa PAb1] Length = 248 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 95/249 (38%), Positives = 141/249 (56%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A + ++ S+ + G K Sbjct: 1 MFSGEMDPNNAYLDIQAGSGGTEAQDWANMLLRMYLRWADKHGFDATIIELSEGEVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS V V PE + +++I Sbjct: 61 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFTAVFVSPEIDDNIEIEINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA+LY+ Sbjct: 121 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRAKLYE 180 Query: 280 VERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +E ++ A++ + K IG G +IR+Y Q RI D R + + VL G +D Sbjct: 181 LEMQKRTAASQALEDSKSDIGWG---HQIRSYVLDQSRIKDLRTGIERSDCDKVLDGDLD 237 Query: 338 DIINPLLTA 346 + + L Sbjct: 238 EYLEASLKQ 246 >gi|253581892|ref|ZP_04859116.1| peptide chain release factor 2 [Fusobacterium varium ATCC 27725] gi|251836241|gb|EES64778.1| peptide chain release factor 2 [Fusobacterium varium ATCC 27725] Length = 328 Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats. Identities = 107/331 (32%), Positives = 166/331 (50%), Gaps = 11/331 (3%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 E + + ++ I+ + + + E + +I E Sbjct: 4 EESFWNDKRSSSAVIKEMNEEKEIIAEFKKLESEVGEEEVLIDFVEMGETDFQAELEEKH 63 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 I + + + LL D + I+ I +G GG+EA + L+RMY R+ +K Sbjct: 64 MILGKD---IDHFDTRLLLDGEFDSNNAIVTIHSGAGGTEACDWADMLYRMYSRWCNEKK 120 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +K+ + D G K I + G + MK E G+HR+ R+ +A+ + HTS A+V Sbjct: 121 YKISEMDFMPGDSVGIKSITFLVEGSNAYGYMKSEKGIHRLVRISPFDANKKRHTSFASV 180 Query: 205 AVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V+PE E +V++ D+RIDT RASG+GGQHVN TDSAVRITHIPTGI+V E+SQ Sbjct: 181 EVMPEVDESVEVNVDAGDLRIDTYRASGAGGQHVNMTDSAVRITHIPTGIVVTCQRERSQ 240 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQG-RITDH 319 NR AMK+L+++L ++E K+ E + +IG G+ +IR+Y F + DH Sbjct: 241 LNNRETAMKMLKSKLIELEMKKKEEELKKIQGEQSEIGWGN---QIRSYVFQPYTLVKDH 297 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R ++ V+ G ID IN L ++ K Sbjct: 298 RTAAESGNIKAVMDGDIDIFINTYLRWNKTK 328 >gi|254513973|ref|ZP_05126034.1| peptide chain release factor 2 [gamma proteobacterium NOR5-3] gi|219676216|gb|EED32581.1| peptide chain release factor 2 [gamma proteobacterium NOR5-3] Length = 280 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 103/284 (36%), Positives = 153/284 (53%), Gaps = 11/284 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +D ++E+ + K + LE + + D + L+I++G+GG+EA Sbjct: 1 MASEENDEAAVSDLELEIQGLLKVLELLE----FRRMFNGEMDANNAFLDIQSGSGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ R + E++ +S D G K SG F ++ E+GVHR+ Sbjct: 57 QDWAEMLLRMYLRWGESRGFTTELIEASGGDVAGIKSATIKFSGEYAFGWLRTETGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS A+V V I+++I D+R+DT RASG+GGQHVN TDSAV Sbjct: 117 VRKSPFDSGNRRHTSFASVFVAPEIDDNIEIEINPADLRVDTYRASGAGGQHVNKTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 R+TH P+GI+V +E+SQHQNR AMK+LR +LY++E + E+ + K IG G Sbjct: 177 RLTHNPSGIVVQCQTERSQHQNRDNAMKLLRGKLYEMEVLKRNAEKQVMEDNKADIGWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R N+ + VL G ID I L Sbjct: 236 --SQIRSYVLDASRIKDLRTNVETSNTQAVLDGAIDQFIEASLK 277 >gi|218682869|ref|ZP_03530470.1| peptide chain release factor 2 [Rhizobium etli CIAT 894] Length = 267 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 93/245 (37%), Positives = 142/245 (57%), Gaps = 8/245 (3%) Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 + LE+ +G GG+E+ + L RMY R+A +++KVE+L D ++ G K + Sbjct: 13 RQQRHYLEVHSGAGGTESQDWANMLLRMYTRWAERQRFKVELLEVHDGEEAGIKSATLLV 72 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 G + +K ESGVHR+ R+ +++ R HTS +++ V P I ++I D RIDT Sbjct: 73 KGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFSSIWVYPVVDDSIQIEINESDCRIDT 132 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+SG+GGQHVNTTDSAVRITH+PTGI+V E+SQH+NR +A +LRAR+Y+ E K+ Sbjct: 133 YRSSGAGGQHVNTTDSAVRITHMPTGIVVQCQQERSQHKNRAKAWDMLRARMYEAELKKR 192 Query: 286 ANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 + +A K IG G +IR+Y + + D R + + VL G +++ + Sbjct: 193 EDAANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVASTAPDDVLDGDLNEFMEA 249 Query: 343 LLTAH 347 L Sbjct: 250 ALAHR 254 >gi|332375689|gb|AEE62985.1| unknown [Dendroctonus ponderosae] Length = 400 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 126/360 (35%), Positives = 200/360 (55%), Gaps = 24/360 (6%) Query: 6 HKQICDLKNRFAEI---ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I L++ + E+ + MS + + P+I+ I+ D+ DL Sbjct: 50 KDYIAKLQSEYLELLKVDSYMSNPRCI-----------ELQPVINIITKRDELITNIVDL 98 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP-KDTDDDKSCILEIRAGTG 121 + + D ++ LA+ E +E ++ LE + LLP D + ILE++AG G Sbjct: 99 KELAA--SPDKDLAALAKEEETELETKLYHLEETLIDALLPEDREDSFDTIILEVQAGVG 156 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LF ++F MY + +L+ WK +++ D GG + ++G + K E G Sbjct: 157 GQEAMLFAQEMFDMYCSFISLKGWKYDIVDYMGTDLGGIRRGSILVNGSKAYKFFKHEGG 216 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+P+TE S R+HTS +V LP+ EID+ I +D++I+T R++G+GGQHVNTTD Sbjct: 217 VHRVQRIPSTEKSSRIHTSTVSVTALPQPNEIDIRIDPKDLKIETKRSTGAGGQHVNTTD 276 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI H+PT IMV ++SQ +NR A+ LRA LY E + ++ + +K Q+ S Sbjct: 277 SAVRIVHLPTNIMVECQVDRSQIKNRKLALTKLRALLYQRELEEQLAQQESTKKSQVSSN 336 Query: 301 DRSERIRTYNFSQGRITDHR-INLTLYKLEYVLQ-G-YIDDIINPLLTAHQAKMIGSASE 357 +R+E+IRTYNF+Q RITDHR + + ++ ++ G ++++ L + I S E Sbjct: 337 NRNEKIRTYNFNQDRITDHRLSGVHFHNIKMFMETGADLEELNEQL---DRQARISSLLE 393 >gi|85859385|ref|YP_461587.1| peptide chain release factor 2 [Syntrophus aciditrophicus SB] gi|85722476|gb|ABC77419.1| bacterial peptide Chain Release Factor 2 (RF-2) [Syntrophus aciditrophicus SB] Length = 279 Score = 188 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 103/285 (36%), Positives = 154/285 (54%), Gaps = 9/285 (3%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + N + + ++ + ++ D + I+ I AG GG+E Sbjct: 1 MAKEENDEEALEAISNDIESLRKSVRE-----SELKMMLGSEQDPMNAIVSIHAGAGGTE 55 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A +V L RMY R+A R +K ++ D+ G K + TI G + K E G+HR Sbjct: 56 AQDWVEMLLRMYLRWAEKRGFKTTIIDYLPGDEAGVKSVSFTIEGEYAYGYAKAEIGIHR 115 Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +AS R HTS A+V V PE EI V+I +D+RIDT R++G+GGQHVN TDSA Sbjct: 116 LVRISPFDASSRRHTSFASVFVYPEVNDEIVVEIDEKDLRIDTYRSTGAGGQHVNKTDSA 175 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRITH+PTGI+V +E+SQH+N+ AMK LR+RLY+++ + + S K + Sbjct: 176 VRITHMPTGIVVQCQNERSQHKNKAMAMKYLRSRLYELKIQEQNEKLSEINKTK-KDIAW 234 Query: 303 SERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y + DHR N+ + + VL G IDD+I L Sbjct: 235 GSQIRSYVLQPYKMVKDHRTNIEIGNVGRVLDGDIDDLIEAYLLQ 279 >gi|195472530|ref|XP_002088553.1| GE18626 [Drosophila yakuba] gi|194174654|gb|EDW88265.1| GE18626 [Drosophila yakuba] Length = 392 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 123/324 (37%), Positives = 183/324 (56%), Gaps = 5/324 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 A + ++S + ++ + + + D + + + ++ ++ + + Sbjct: 58 RLAQLEGVVSALEQRRVLERHITSAKDMEAEKDED-MRELMREENEVYVDLLGKQDQALL 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D + + I + AG GG EA LF +L+ MY Y W E + D Sbjct: 117 QELLTLSDDEQYPALIFGLNAGAGGQEAMLFAQELYEMYTGYFDHMGWNWEEFAGESTDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + +SG F ++FE+GVHRVQRVPATE SGR+HTS A++ V+P A+I V I Sbjct: 177 GGLRHASLMVSGEDAFRWLRFEAGVHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHI 236 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR AMK LR+R Sbjct: 237 AEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSR 296 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG- 334 L + + + + A +K Q GS +R+E+IRTYNF Q RITDHRI TL+ L+ L+G Sbjct: 297 LVQQQLESVEANKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLDGFLKGG 356 Query: 335 -YIDDIINPLLTAHQAKMIGSASE 357 + +I L H+ + + E Sbjct: 357 DQLSGLIEKLQMEHRKERLKELLE 380 >gi|189502408|ref|YP_001958125.1| hypothetical protein Aasi_1048 [Candidatus Amoebophilus asiaticus 5a2] gi|189497849|gb|ACE06396.1| hypothetical protein Aasi_1048 [Candidatus Amoebophilus asiaticus 5a2] Length = 332 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 88/335 (26%), Positives = 155/335 (46%), Gaps = 8/335 (2%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 + E + + + + S I +D + ++L + + Sbjct: 2 LQDQEAKSLAPDFWENTSQAEVILRNLKITKSWIDAFDHVESLLENLEVTQLFYEAGDVD 61 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + + + LE + ++ +D+ S I+EI G GG+E+ + L RM Sbjct: 62 ETEVEKAYQNLLTGLEALEV----RKMLQNEEDENSAIIEINPGAGGTESQDWAEMLTRM 117 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y + + V+ L+ D G K I+G + +K E G+HR+ R+ +A+G Sbjct: 118 YIMWGEKHNYTVKELAYQRGDVAGVKSATLEITGTFAYGYLKSEIGIHRLVRISPFDAAG 177 Query: 196 RVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 + HTS A++ V P I +DI DI DT RA G+GGQ+VN ++AVR+ H P+GI+ Sbjct: 178 KRHTSFASIYVYPVVENNIQIDINPADITWDTFRAGGAGGQNVNKVETAVRLKHAPSGII 237 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V E+SQ QN+ +A+++L+++LY +E + E+ + D +IR Y Sbjct: 238 VECQQERSQAQNKEKALRILKSKLYQLELDKRNAEKEKMESSK-KRIDFGSQIRNYVLHP 296 Query: 314 GR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D+R ++ VL G ID+ I L + Sbjct: 297 YKLVKDNRTDVETSDTSGVLNGNIDEFIKAYLMHY 331 >gi|313147825|ref|ZP_07810018.1| peptide chain release factor RF-2 [Bacteroides fragilis 3_1_12] gi|313136592|gb|EFR53952.1| peptide chain release factor RF-2 [Bacteroides fragilis 3_1_12] Length = 337 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 90/341 (26%), Positives = 145/341 (42%), Gaps = 19/341 (5%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 R D K + + + I Y++ K +L + + Sbjct: 2 RTQAPGFWDDQKKAEAQMKLVKGLQKWIDGYNEVKTLADELELAFDFYKDELVTEQEVDE 61 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 + + LE + +D D SC+L+I +G GG+E+ + L RMY RYA Sbjct: 62 AYAKALEHVENLELQNM----LRDEADQMSCVLKINSGAGGTESQDWASMLMRMYLRYAE 117 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 +K + + + D+ G K I G + +K E+GVHR+ RV A G+ TS Sbjct: 118 TNGYKATMANLQEGDEAGIKTCTIQIEGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSF 177 Query: 202 ATVAVLPEAAEIDVDIPLEDI-RIDTMRASGSGGQHVNTTDSAVRITHIPTG-------- 252 A+V V P + L DT R+ G+GGQ+VN +S VR+ + Sbjct: 178 ASVFVTPLVDDSIEVNILPACISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEE 237 Query: 253 -IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309 ++ + + Q +NR AM+ LR+ LYD E + E++ K +I G +IR+Y Sbjct: 238 ILIENTETRDQPKNRENAMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSY 294 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 F R+ DHR N + V+ G I+ I L ++ Sbjct: 295 VFDDRRVKDHRTNFQTSDVNGVMDGKIEGFIKAYLMEFSSE 335 >gi|163868347|ref|YP_001609556.1| peptide chain release factor 2 [Bartonella tribocorum CIP 105476] gi|161018003|emb|CAK01561.1| peptide chain release factor RF-2 [Bartonella tribocorum CIP 105476] Length = 321 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 108/317 (34%), Positives = 162/317 (51%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + + + +E +L + + + I D + + Sbjct: 1 MRERQRLDDSINGLLSFTKTLEECIELIAMGEEESDVEIIADAENSIRHLKSEIDK---- 56 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 +L D LE+ AG GG+E+ + L RMY R+A + KVEVL D Sbjct: 57 -RQIDVLLSGEADSNDTYLEVHAGAGGTESQDWASMLLRMYMRWAEQHEMKVEVLEIHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ + HTS A++ V P I+ Sbjct: 116 EEAGIKSATILVKGHNAYGLLKTESGVHRLVRISPFDSNAKRHTSFASIWVYPVIDDNIE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 VD+ D+RIDT RASG+GGQHVNTTDSAVRITHI TGI+V +E+SQH+NR A +L Sbjct: 176 VDVSEADVRIDTYRASGAGGQHVNTTDSAVRITHIKTGIVVQCQTERSQHKNRATAWSML 235 Query: 274 RARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RARLY+ E K+ E + + K +IG G +IR+Y + + D R + + Sbjct: 236 RARLYEEELKKREEETNAVESSKTEIGWG---HQIRSYVLQPYQLVKDLRTGIENTDPQS 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +D I L+ Sbjct: 293 VLNGNLDAFIEAALSQR 309 >gi|307566238|ref|ZP_07628684.1| putative peptide chain release factor 2 [Prevotella amnii CRIS 21A-A] gi|307345042|gb|EFN90433.1| putative peptide chain release factor 2 [Prevotella amnii CRIS 21A-A] Length = 374 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 92/373 (24%), Positives = 161/373 (43%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNR----------------FAEIELRMSESPSVDAYIKLTEEYAAISPII 46 ++ Q+ D+ +R F E +LR ++ ++ + I Sbjct: 1 MITSDQLKDILSRVESLKRYLGIDKKRIEFEEEQLRTQAPDFWESPDYARQQMKKVKEIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + YD+ K + ++L + D + I +LE + + Sbjct: 61 RWVKGYDKAKAQAEELQLAFDFYKDKLVTEDEVDTMYNKVVSTIEDLEL----KNMLRQE 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+++I +G GG+E+ + L RMY R+ +KV + D+ G K + Sbjct: 117 EDPMECVMKINSGAGGTESQDWAEMLMRMYMRWGEAHGYKVTISDILSGDEAGIKSVTMK 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRI 224 + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 FESGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVTPLVDDTIEVYVDPARVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 DT R+SG+GGQ+VN +S VR+ + ++ + + Q +NR +AM++L++ Sbjct: 237 DTFRSSGAGGQNVNKVESGVRLRYQYEDPDTGEKEEILIENTETRDQPKNRAKAMQLLKS 296 Query: 276 RLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LY+ E K+ ++ K +I G +IR+Y F R+ DHR N +E V+ Sbjct: 297 QLYNREMKKRMEAQAKVEAAKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTSDVEGVMN 353 Query: 334 GYIDDIINPLLTA 346 G IDD I L Sbjct: 354 GKIDDFIKAYLME 366 >gi|289615662|emb|CBI57583.1| unnamed protein product [Sordaria macrospora] Length = 436 Score = 188 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 121/376 (32%), Positives = 193/376 (51%), Gaps = 34/376 (9%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI-KLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++ L ++ ++ Y + IS +++ + D+ K +LH + Sbjct: 45 ERARKLAAEHQQLTKQLES-----DYEPAAAKRAGEISKVVAALQELDKAKAALDELHGL 99 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D+E+R LA ++ A +K + L ++ L PK D C++E+ G GG+E Sbjct: 100 LK--SDDAELRQLANDDLDATKKHLETLGTNLSATLTPKHPFADMPCLIELHPGPGGTEG 157 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDND--------DGGYKEIVATISGRGVFSRMK 177 F LFRMY++Y + + VLS + + + E V ++ G F+ + Sbjct: 158 RHFADTLFRMYQKYCENKGYTARVLSYQEAEDRTPGLDGEVPISEAVLEVTDPGAFAAFR 217 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-------------IPLEDIRI 224 E+G+HRVQR+PATE GR HTSA V VLP E D I +++ Sbjct: 218 GEAGMHRVQRIPATEKQGRTHTSAVAVWVLPSFPENSTDAENDFNNPESDFYIDPTEVKS 277 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERK 283 + MRASG+GGQHVN T+SA+R+THIPTGI V+ +SQ QNR +A ++LR+R+ + R+ Sbjct: 278 EKMRASGAGGQHVNKTESAIRLTHIPTGIQVSMQDSRSQSQNREKAWRLLRSRIASLRRE 337 Query: 284 RMANERSANRKLQIGS--GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDI 339 + + R + R ++IRTYN+ Q R TDHR L ++ L VLQG +D + Sbjct: 338 QRDAQAKDLRDSVLSQAQMSRGDKIRTYNYQQDRCTDHRSGLDVHNLPNVLQGGEILDKV 397 Query: 340 INPLLTAHQAKMIGSA 355 IN + + A I + Sbjct: 398 INSVQSWLTAMDIQNL 413 >gi|260063027|ref|YP_003196107.1| peptide chain release factor 2 [Robiginitalea biformata HTCC2501] gi|88784596|gb|EAR15766.1| peptide chain release factor 2 [Robiginitalea biformata HTCC2501] Length = 313 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 155/315 (49%), Gaps = 8/315 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + + ++ + DL ++ H + + + I +LE Sbjct: 1 MKRLDTLKGWVEEFETAESLLSDLEVMVEFHEAGEVAEEEVARHLKRATDAIEKLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D DD + +L+I AG GG+E+ + L RMY ++ +KV L+ + D Sbjct: 57 FRNMLSDEGDDLTAVLQITAGAGGTESCDWASMLMRMYMMWSEKNGYKVRELNYQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I Sbjct: 117 GIKTVTLEIEGPFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDSIEIEI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 DI I T R+SG+GGQ+VN ++ V++ H PTGI + S +SQH NR A+K+L+++ Sbjct: 177 NPADIEITTARSSGAGGQNVNKVETKVQLVHKPTGIQISCSDSRSQHDNRATALKMLKSQ 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 LY++E ++ R A ++ + +IR Y + + D R ++ V+ G Sbjct: 237 LYEIELRKKQEAREAIESSKMK-IEWGSQIRNYVMHPYKLVKDVRTGEETGNVDAVMDGE 295 Query: 336 IDDIINPLLTAHQAK 350 I+D + L + Sbjct: 296 INDFLKAFLMMTGQE 310 >gi|158336840|ref|YP_001518014.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017] gi|158307081|gb|ABW28698.1| peptide chain release factor 2 [Acaryochloris marina MBIC11017] Length = 304 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 84/307 (27%), Positives = 149/307 (48%), Gaps = 9/307 (2%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 ++++ + + + L ++ +++ A ++ + L Sbjct: 1 MTQLQDWQGTLDDAEALVELLQLEEDAGLLQEAAGNLRQLNQQLDQW-----ELQQLLSG 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +L I G GG++A + L RMY R++ + +KV + S+ D+ G K Sbjct: 56 PYDKVGAVLTINTGAGGTDAQDWAEMLLRMYTRWSERQGYKVHLAELSEGDEAGIKSATL 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + GR + +K E G HR+ R+ A+G+ TS A + V+P+ ++DIP D+ I Sbjct: 116 EVEGRYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGIEVMPQLDHEVELDIPDTDLEI 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 T R+ G GGQ+VN ++AVRI H+PTG+ V + E+SQ QN+ +AM +L+A+L + ++ Sbjct: 176 TTSRSGGKGGQNVNKVETAVRIVHVPTGLAVRCTQERSQLQNKEKAMALLKAKLLVIAQE 235 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 + A E + R + +IR Y F + + D R N +E V+ G +D+ I Sbjct: 236 QKAKEIADIRGDAVE-AAWGNQIRNYVFHPYQMVKDLRTNQETTAIESVMDGALDNFIEA 294 Query: 343 LLTAHQA 349 L Sbjct: 295 YLRQENQ 301 >gi|86357282|ref|YP_469174.1| peptide chain release factor 2 [Rhizobium etli CFN 42] gi|86281384|gb|ABC90447.1| peptide chain release factor 2 protein [Rhizobium etli CFN 42] Length = 322 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 102/317 (32%), Positives = 161/317 (50%), Gaps = 13/317 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + ++ + +Q+ ++ + E + E K ++ Sbjct: 1 MRERQQLDDGVNGVRQLEQQLKDNV-----ELVELGEEEGDEGIVKEAEDALKALKAEAA 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + D LE+ +G GG+E+ + L RMY R+A +++KVE+L D Sbjct: 56 RRQVEAMLSGEADSNDTYLEVHSGAGGTESQDWANMLLRMYTRWAERQRFKVELLEVHDG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 ++ G K + G + +K ESGVHR+ R+ +++ R HTS +++ V P I+ Sbjct: 116 EEAGIKSATLLVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFSSIWVYPVVDDSIN 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI D RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+NR +A ++L Sbjct: 176 IDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVACQQERSQHKNRAKAWEML 235 Query: 274 RARLYDVERKRM--ANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RAR+Y+ E K+ A A K IG G +IR+Y + + D R + + Sbjct: 236 RARMYEAELKKREEAANAEAASKTDIGWG---HQIRSYVLQPYQLVKDLRTGVASTAPDD 292 Query: 331 VLQGYIDDIINPLLTAH 347 VL G +++ + L Sbjct: 293 VLDGDLNEFMEAALAHR 309 >gi|120436153|ref|YP_861839.1| peptide chain release factor 2 [Gramella forsetii KT0803] gi|117578303|emb|CAL66772.1| peptide chain release factor 2 [Gramella forsetii KT0803] Length = 333 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 90/330 (27%), Positives = 164/330 (49%), Gaps = 8/330 (2%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + D K + ++ S + Y++ + +DL + + D + Sbjct: 2 EEKTFAPDFWDDPKKAEQIMKEVNAEKSWVGDYEKAETLVEDLEVIYDFYKEDEATAEDV 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 Q + I +LE + + + D S +L+I AG GG+E+ + L RMY + Sbjct: 62 QQRNDKAVELIEDLE----FKNMLSEEGDSMSAVLQITAGAGGTESCDWAEMLMRMYLMW 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A RK+K+ L+ D G K + I G F +K E+GVHR+ R+ +++ + HT Sbjct: 118 AEKRKYKIRELNYQAGDVAGIKTVTLEIEGEYAFGWLKGENGVHRLVRISPFDSNAKRHT 177 Query: 200 SAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-S 257 S A+ + P I++DI D+ +TMR+SG+GGQ+VN ++AVR+ H PTGI++ S Sbjct: 178 SFASAYIYPLVDDSIEIDINPSDLSWETMRSSGAGGQNVNKVETAVRLRHEPTGIVIENS 237 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-I 316 +SQ +N+ +AM++L+++L+++E ++ +R ++ + +IR Y + + Sbjct: 238 ETRSQLENKNKAMQLLKSQLFEIELQKKQEQRREIEDSKMK-IEWGSQIRNYVMHPYKLV 296 Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 D R ++ V+ G ID + L Sbjct: 297 KDVRTAEETGNVDDVMNGNIDAFLKSFLMM 326 >gi|241954572|ref|XP_002420007.1| peptide chain release factor, mitochondrial precursor, putative [Candida dubliniensis CD36] gi|223643348|emb|CAX42223.1| peptide chain release factor, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 392 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 124/347 (35%), Positives = 194/347 (55%), Gaps = 17/347 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ E+ ++++ D +K + + I+S + QE +L + Sbjct: 50 ERAQTIQQEHKELSEKLADKYIPDLQVK----FDNYTNILSMFGKLETLTQEYIELTEIT 105 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E ++ + V +I +L +E+ L P DK CI+E+R G GG+EA+ Sbjct: 106 DDPGLYKEAQEELKSIV---IPQIEKLVSELTVKLRPPVKYADKGCIIELRPGVGGNEAS 162 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF GDL MY +A+ WK +++S N G E + +I G + M+ ESGVHRVQ Sbjct: 163 LFTGDLLNMYINFASEMNWKYKIISEGKNSSGFINEAILSIDTLGSYDIMRHESGVHRVQ 222 Query: 187 RVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVN 238 R+P TE GRVHTS + V VLP+ + + ++RIDTMRA G GGQHVN Sbjct: 223 RIPETETKGRVHTSTSAVVVLPKLSEGNESSLKDDERVFAPGEVRIDTMRAGGKGGQHVN 282 Query: 239 TTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVR+ HIPTG+ ++ E+SQ N+ +A +LR+RL E++ + R Q+ Sbjct: 283 TTDSAVRLVHIPTGMIVIQQDERSQPLNKAKAFAILRSRLAQKEQEEEILRQKKLRTDQV 342 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPL 343 S DRS++I+TYN+ + R+TDHRIN +++ L+ VL+G + +I+ Sbjct: 343 SSTDRSDKIKTYNYKENRVTDHRINYSMHDLQGVLEGRKLGQLIDTY 389 >gi|317486373|ref|ZP_07945201.1| peptide chain release factor 2 [Bilophila wadsworthia 3_1_6] gi|316922362|gb|EFV43620.1| peptide chain release factor 2 [Bilophila wadsworthia 3_1_6] Length = 329 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 114/325 (35%), Positives = 164/325 (50%), Gaps = 13/325 (4%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV-----LAIEKEIR 91 E + + + ++ D + + + +EI++ A + + Sbjct: 3 REKSRLEAELDRLDTLKNCHASMLDWQEMAQELSGGAEIKEGGDAAEALESLSAEIERLT 62 Query: 92 ELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS 151 EL E LL +D ILEI G GG+EA + L RMY R+A + VE L Sbjct: 63 ELLEETETNLLLSSEEDHADAILEIHPGAGGTEAQDWAQMLQRMYLRWADSHGFSVEELD 122 Query: 152 SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA- 210 D+ G K + ISG V+ +K E G+HR+ R+ ++SGR HTS A+V V+P+A Sbjct: 123 FLPGDEAGIKSVSLRISGENVYGFLKGERGIHRLIRISPFDSSGRRHTSFASVDVIPDAG 182 Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 +I+++I D+R+D ASG GGQ VNTT SAVRITHIP+GI V +E+SQH N+ A Sbjct: 183 DDIEIEIKESDLRVDIFCASGPGGQGVNTTYSAVRITHIPSGISVQCQNERSQHHNKDSA 242 Query: 270 MKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLY 326 M++LR RLYD+E + R A K I G +IRTY R + DHR N + Sbjct: 243 MRILRGRLYDLELSKRDAARQAEYAGKNAISFG---SQIRTYTLQPYRLVKDHRNNCEIG 299 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKM 351 + VL G ID ++ L Sbjct: 300 DTDAVLDGRIDKLLRDYLLWQHTNR 324 >gi|197123211|ref|YP_002135162.1| LigA [Anaeromyxobacter sp. K] gi|196173060|gb|ACG74033.1| LigA [Anaeromyxobacter sp. K] Length = 372 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 112/346 (32%), Positives = 169/346 (48%), Gaps = 16/346 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLHT 64 + + R AEI + +K +E A + + + + + Q L Sbjct: 24 DVERKELRVAEISKLSEDPAFWTDNVKAQALLKEKAQLEQVTQACAAVRRALDDAQALSE 83 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + D+ R A A+ +++ LE + D I+E+++G GG E Sbjct: 84 LAEEARDDA-TRAEAAEAAEAVGRQLEGLELQKM----LSGPHDAAGAIVEVKSGAGGVE 138 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L+RMY RY R W+VE ++ G + G + +K E GVHR Sbjct: 139 AMDWAAMLYRMYVRYCERRGWEVEPADLVAGEEAGISSASFIVRGDHPYGWLKAEKGVHR 198 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ + + R TS A V V PE + +DI D+RIDT R+SG+GGQ VN TDSA Sbjct: 199 LVRISPFDQNARRQTSFAAVDVTPEIEDDIVIDIKEADVRIDTYRSSGAGGQKVNKTDSA 258 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSG 300 VR+TH+PTGI+V +E+SQ +NR A K+LRA+LYD+E K+ A R A K I Sbjct: 259 VRMTHLPTGIVVAVQNERSQQKNRSVAWKILRAKLYDLEEKKRAAARDAAEALKKDI--- 315 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 D +IR+Y + + D R + K++ VL G +D I P L Sbjct: 316 DFGSQIRSYVLQPYQMVKDLRTGVETGKVDDVLDGDLDPFIQPYLM 361 >gi|288801053|ref|ZP_06406509.1| peptide chain release factor 2, programmed [Prevotella sp. oral taxon 299 str. F0039] gi|288331987|gb|EFC70469.1| peptide chain release factor 2, programmed [Prevotella sp. oral taxon 299 str. F0039] Length = 373 Score = 187 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 87/373 (23%), Positives = 157/373 (42%), Gaps = 36/373 (9%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ +Q+ D++ R + +LR D + E+ + I Sbjct: 1 MITAEQLKDIQERADALHAYLNIEEKKVEFEEEQLRTQAPDFWDDVERAQEQMKKVKGIE 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + Y + + +L + + + + LE + Sbjct: 61 KWLVGYKEVRLLADELQLSFDFFHDEMVSESEVDETYKKALQAVEALELMNM----LRQK 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D C+L+I +G GG+E+ + L R+Y R+A KV + + + D+ G K + Sbjct: 117 EDPMDCVLKINSGAGGTESQDWASMLMRLYMRWAESHGHKVTISNLQEGDEAGIKSVTME 176 Query: 167 ISG-RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI-PLEDIRI 224 I G + +K E+GVHR+ RV A G+ TS A+V V P + + Sbjct: 177 IEGGEFAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVSPLVDDTIEVYVDPSKVSW 236 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLRA 275 D R+ G+GGQ+VN ++ VR+ + T ++ + + Q +NR AM++L++ Sbjct: 237 DLFRSGGAGGQNVNKVETGVRLRYQYTDPDTGVEEEILIENTESRKQLENRNNAMRLLKS 296 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LYD K+ ++ K +I G +IR+Y F R+ DHR N ++ V+ Sbjct: 297 QLYDRAMKKRLEAQAKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTTDVDGVMN 353 Query: 334 GYIDDIINPLLTA 346 G ID+ I L Sbjct: 354 GKIDEFIKAYLME 366 >gi|148703821|gb|EDL35768.1| mitochondrial translational release factor 1, isoform CRA_c [Mus musculus] Length = 436 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 121/359 (33%), Positives = 197/359 (54%), Gaps = 19/359 (5%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + DL + ++ + S + L +A ++P+ + + +Q ++L + Sbjct: 77 QKYMEDLNKEYQTLDQCLQGISENEGDRRALHRRHAQLAPLAAVYQEIQEAEQAIEELES 136 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++L E I+++I L +E+ L+PK+ D ILE+ +G T Sbjct: 137 LCKSLNKQDEKQLQELVSEERQIIDQKIHRLYSELLERLVPKEKYDWSDVILEVTSGRTT 196 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG F ++F MY+ Y+ + WK E+L+ + D GG A ISG V+ +K+E Sbjct: 197 GGDICQQFTREIFDMYQNYSYYKHWKFELLNYTPADYGGLHHAAARISGDSVYKHLKYEG 256 Query: 181 GVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 G+HRVQR+P S R+ HT +V VLP+ E+DV + +D+R+DT RA G+GGQHV Sbjct: 257 GIHRVQRIPEVGLSSRMQRIHTGTMSVIVLPQPDEVDVKVDPKDLRVDTFRARGAGGQHV 316 Query: 238 NTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 NTTD V + E+SQ +N+ A++VLRARLY ++ ++ RKLQ+ Sbjct: 317 NTTDRLV---------VECQQERSQLKNKEIALRVLRARLYQQIIEKDRCQQQNARKLQV 367 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 G+ +SERIRTYNF+Q R+TDHRI + ++ L+G +D +I LL + + I Sbjct: 368 GTRAQSERIRTYNFTQDRVTDHRIAYEVRDIKEFLRGEKCLDQLIERLLQSADEEAISE 426 >gi|19113899|ref|NP_592987.1| mitochondrial peptide chain release factor (predicted) [Schizosaccharomyces pombe 972h-] gi|1172908|sp|Q09691|RF1M_SCHPO RecName: Full=Putative peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|1052800|emb|CAA90504.1| mitochondrial peptide chain release factor (predicted) [Schizosaccharomyces pombe] Length = 396 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 119/334 (35%), Positives = 187/334 (55%), Gaps = 7/334 (2%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 + ++ L + A + + + S + ++ DL + SD+E++ +A E+ Sbjct: 58 DQSAMTNDTDLAKRIARLRRVHNAYSKFKSLSEQISDLKQM-EAQESDAEVKMMAVTEIN 116 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 I +I + ++ LLP+ ++EIR G GG+EAA+F +L MY +YA + Sbjct: 117 EISNKIPKSIEDLENTLLPQADSYALPALIEIRPGVGGTEAAIFANELVEMYFQYANFKG 176 Query: 145 WKVEVLSSS-DNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 W + +S S E + +I G G + + E GVHRVQR PATE GRVHTS A+ Sbjct: 177 WNCKFISKSAVQGLEAITEAIFSIEGEGAYGHLMLEGGVHRVQRTPATETKGRVHTSTAS 236 Query: 204 VAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEK 260 V VLP+ E +++I+ MR+ G+GGQHVN T+SAVR+THIPTGI V+ + Sbjct: 237 VIVLPQVSNDESSSLYDSSEVKIEVMRSRGAGGQHVNRTESAVRLTHIPTGITVSMQDSR 296 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 SQHQN+ +A VL +RL + + RK Q+ S DRSE++RTYNF+Q R+TDHR Sbjct: 297 SQHQNKEKAFLVLNSRLAALNAAKENEAERLKRKNQVTSSDRSEKLRTYNFNQNRVTDHR 356 Query: 321 INLTLYKLEYVLQGY--IDDIINPLLTAHQAKMI 352 I L+++ L +QG D+ + + ++ +++ Sbjct: 357 IGLSMHDLSTFMQGEEKFDEFLEKIRIWNREQLL 390 >gi|94984277|ref|YP_603641.1| peptide chain release factor 2 [Deinococcus geothermalis DSM 11300] gi|94554558|gb|ABF44472.1| peptide chain release factor 2 [Deinococcus geothermalis DSM 11300] Length = 380 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 102/327 (31%), Positives = 156/327 (47%), Gaps = 16/327 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 I R E++ +S+ + ++T+E ++ I+ ++ Sbjct: 32 DIPGKTRRLNELDRELSDPELWNNPSRARQVTQEAGSLRRIVDGYRTLQSDANSLNEMLE 91 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + D + I+ E L D I+ ++ G GG+E Sbjct: 92 MASDEERALLAEEQDTIQARVDELYRETL---------FTMKHADAPAIVRVKGGAGGTE 142 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + G L RMY R+A R +KV+VL + GY+ I I G F M E GVHR Sbjct: 143 AQDWAGMLARMYMRWAERRGYKVDVLDEQPGEQAGYQSIEFIIRGEKAFGMMAPEHGVHR 202 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDS 242 + RV +A+ R TS A+V V+PE E +D IP D+R+D R+ G+GGQ VNTTDS Sbjct: 203 LVRVSPFDANNRRQTSFASVDVVPEVPEEQIDIVIPDSDVRVDVYRSQGAGGQGVNTTDS 262 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+TH+PTGI+V +SQ +NR A ++L+ RLYD+E ++ E + R Q + Sbjct: 263 AVRVTHLPTGIIVAIQVTRSQIKNREMAFQILKQRLYDLEMRKREEEEAKARGEQ-KKIE 321 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKL 328 +IR+Y + + DHR L + Sbjct: 322 WGSQIRSYVLDKQYVKDHRTGLMKHNP 348 >gi|28950278|emb|CAD71246.1| related to translation releasing factor RF-1, mitochondrial [Neurospora crassa] Length = 430 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 189/366 (51%), Gaps = 32/366 (8%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + L ++ ++ A + IS +++ + D+ K +L+ ++ Sbjct: 39 DRARKLAAEHKQLTKQLESEYEPTAAKRAG----EISKVVAALQELDKAKAALDELNGLL 94 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+E+R LA ++ A +K + L ++ L PK D C++E+ G GG+E Sbjct: 95 --ESDDAELRQLANDDLDATKKHLETLGLNLSATLTPKHPFADMPCLIELHPGPGGTEGR 152 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDND--------DGGYKEIVATISGRGVFSRMKF 178 F LFRMY+RY + + V+S + + + E + ++ G F+ + Sbjct: 153 HFADTLFRMYQRYCENKGYSARVISYQEAEDRTPGLDGEVPISEAILEVTDPGAFAAFRG 212 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-------------IPLEDIRID 225 E+G+HRVQR+PATE GR HTSA V VLP E D + +++ + Sbjct: 213 EAGMHRVQRIPATEKQGRTHTSAVAVWVLPSFPENSTDAENDFNNPESDFYVDPTEVKSE 272 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 MRASG+GGQHVN T+SA+R+THIPTGI V+ +SQ QNR RA ++LR+R+ + R++ Sbjct: 273 KMRASGAGGQHVNKTESAIRLTHIPTGIQVSMQDSRSQQQNRERAWRLLRSRIASLRREQ 332 Query: 285 MANERSANRKLQIGS--GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + R + R ++IRTYN+ Q R TDHR L ++ L VLQG +D +I Sbjct: 333 REAQAKDLRDSVLSQSQMSRGDKIRTYNYQQDRCTDHRSGLDVHNLPNVLQGGEVLDKVI 392 Query: 341 NPLLTA 346 N + + Sbjct: 393 NSVQSW 398 >gi|255721217|ref|XP_002545543.1| peptide chain release factor 1, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240136032|gb|EER35585.1| peptide chain release factor 1, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 390 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 129/347 (37%), Positives = 196/347 (56%), Gaps = 18/347 (5%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++ E+ ++S D +K Y + I+ + + E Q+L + Sbjct: 49 ERAESIRKEHKELSEKLSNDYIPDLQVK----YDNYTNILGLYDKLNTYRSEYQELVNI- 103 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D ++R AQ E+ I E+ +L ++++ L P +K C++E+R G GG+EA+ Sbjct: 104 ---TDDPDLRKEAQEELETIAPEVEKLVSQLSVKLRPPVKYAEKGCMIELRPGVGGNEAS 160 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF GDL MY +A+ WK +++S N G E + I G + M+ ESGVHRVQ Sbjct: 161 LFTGDLLNMYMGFASEMNWKSKIISEGRNASGFLNEAILCIDTLGSYDIMRHESGVHRVQ 220 Query: 187 RVPATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVN 238 R+P TE GRVHTS A V VLP+ E + ++RIDTMRASG GGQHVN Sbjct: 221 RIPETETKGRVHTSTAAVVVLPKLSEGNESSLKEDERVFAPGEVRIDTMRASGKGGQHVN 280 Query: 239 TTDSAVRITHIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 TTDSAVR+ HIPTG++V + +SQ N+ +A VLR+RL E++ + R Q+ Sbjct: 281 TTDSAVRLVHIPTGMIVYQQDERSQPMNKAKAFAVLRSRLAQKEQEEEMIRQKNLRLDQV 340 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPL 343 S DRS++I+TYNF + R+TDHR+N +++ L+ VL G + +I+ Sbjct: 341 SSTDRSDKIKTYNFKENRVTDHRVNYSMHDLQGVLSGRKLGQLIDVY 387 >gi|289626068|ref|ZP_06459022.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289646233|ref|ZP_06477576.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. aesculi str. 2250] Length = 293 Score = 186 bits (473), Expect = 3e-45, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 12/295 (4%) Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + +DL + + + + D+A E + + + + D + L+ Sbjct: 5 LADAKDLLLMSAEEEDQAAVDDVATEVERLRESLEK-----LEFRRMFSGEMDPNNAYLD 59 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I+AG+GG+EA + L RMY R+A R + ++ S + G K I G F Sbjct: 60 IQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGW 119 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGG 234 ++ E GVHR+ R ++ R HTS + V V PE + ++DI D+RIDT R+SG+GG Sbjct: 120 LRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGG 179 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSA 291 QHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + Sbjct: 180 QHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALE 239 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 240 DTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 291 >gi|19704676|ref|NP_604238.1| peptide chain release factor 2 [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296328111|ref|ZP_06870644.1| peptide chain release factor RF2 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714986|gb|AAL95537.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296154782|gb|EFG95566.1| peptide chain release factor RF2 [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 308 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 160/306 (52%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E D +I S + E K E LL Sbjct: 5 KNIVSRYEKLATEIDDEEVLIDFVESGETSFESELSEKHKNLKTD---IEEFEINLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKGYKVSELDFMEGDSVGVKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E G+HR+ R+ +A+ + HTS A+V V+PE E +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGIHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEINPVDIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH P+GI+V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELELK 241 Query: 284 RMANERSAN--RKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G ID I Sbjct: 242 KKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGDIDGFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|300781808|ref|YP_003778203.1| hypothetical protein PSPTO_1500 [Pseudomonas syringae pv. tomato str. DC3000] gi|290758052|gb|ADD53002.1| protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 293 Score = 186 bits (473), Expect = 4e-45, Method: Composition-based stats. Identities = 102/293 (34%), Positives = 153/293 (52%), Gaps = 12/293 (4%) Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + +DL + + + + D+A + + + + D + L+I+ Sbjct: 7 DAKDLLLMSAEEEDQAAVDDVAAEVERLRASLEK-----LEFRRMFSGEMDPNNAYLDIQ 61 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG+GG+EA + L RMY R+A R + ++ S + G K I G F ++ Sbjct: 62 AGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLR 121 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQH 236 E GVHR+ R ++ R HTS + V V PE + ++DI D+RIDT R+SG+GGQH Sbjct: 122 TEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGGQH 181 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANR 293 VNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + + Sbjct: 182 VNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALEDT 241 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 242 KSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 291 >gi|164424709|ref|XP_960901.2| hypothetical protein NCU06721 [Neurospora crassa OR74A] gi|157070629|gb|EAA31665.2| hypothetical protein NCU06721 [Neurospora crassa OR74A] Length = 415 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 117/366 (31%), Positives = 189/366 (51%), Gaps = 32/366 (8%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + L ++ ++ A + IS +++ + D+ K +L+ ++ Sbjct: 24 DRARKLAAEHKQLTKQLESEYEPTAAKRAG----EISKVVAALQELDKAKAALDELNGLL 79 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + D+E+R LA ++ A +K + L ++ L PK D C++E+ G GG+E Sbjct: 80 --ESDDAELRQLANDDLDATKKHLETLGLNLSATLTPKHPFADMPCLIELHPGPGGTEGR 137 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDND--------DGGYKEIVATISGRGVFSRMKF 178 F LFRMY+RY + + V+S + + + E + ++ G F+ + Sbjct: 138 HFADTLFRMYQRYCENKGYSARVISYQEAEDRTPGLDGEVPISEAILEVTDPGAFAAFRG 197 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-------------IPLEDIRID 225 E+G+HRVQR+PATE GR HTSA V VLP E D + +++ + Sbjct: 198 EAGMHRVQRIPATEKQGRTHTSAVAVWVLPSFPENSTDAENDFNNPESDFYVDPTEVKSE 257 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 MRASG+GGQHVN T+SA+R+THIPTGI V+ +SQ QNR RA ++LR+R+ + R++ Sbjct: 258 KMRASGAGGQHVNKTESAIRLTHIPTGIQVSMQDSRSQQQNRERAWRLLRSRIASLRREQ 317 Query: 285 MANERSANRKLQIGS--GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + R + R ++IRTYN+ Q R TDHR L ++ L VLQG +D +I Sbjct: 318 REAQAKDLRDSVLSQSQMSRGDKIRTYNYQQDRCTDHRSGLDVHNLPNVLQGGEVLDKVI 377 Query: 341 NPLLTA 346 N + + Sbjct: 378 NSVQSW 383 >gi|298488301|ref|ZP_07006333.1| Peptide chain release factor 2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298157123|gb|EFH98211.1| Peptide chain release factor 2 [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 293 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 12/295 (4%) Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + +DL + + + + D+A E + + + + D + L+ Sbjct: 5 LADAKDLLLMSAEEEDQAAVDDVAAEVERLRESLEK-----LEFRRMFSGEMDPNNAYLD 59 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I+AG+GG+EA + L RMY R+A R + ++ S + G K I G F Sbjct: 60 IQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGW 119 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGG 234 ++ E GVHR+ R ++ R HTS + V V PE + ++DI D+RIDT R+SG+GG Sbjct: 120 LRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGG 179 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSA 291 QHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + Sbjct: 180 QHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALE 239 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 240 DTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 291 >gi|125984748|ref|XP_001356138.1| GA19071 [Drosophila pseudoobscura pseudoobscura] gi|54644457|gb|EAL33198.1| GA19071 [Drosophila pseudoobscura pseudoobscura] Length = 392 Score = 186 bits (472), Expect = 4e-45, Method: Composition-based stats. Identities = 115/324 (35%), Positives = 181/324 (55%), Gaps = 5/324 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 + + +++ + ++ + + + D + + + + + ++ + + Sbjct: 58 RLSQLEGVVNALEQRRVLERNITSAKDIEQEKDED-MRKLMEEENEVYADLLSKQEQTML 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D + + I + AG GG EA LF +LF MY Y W+ E + D Sbjct: 117 QELLALADDEVYPALIFGVNAGAGGQEAMLFAQELFEMYTSYFEHMGWEYEEFARETTDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + ++G F ++FE+GVHRVQRVPATE +GR+HTS ++ V+P A++ V I Sbjct: 177 GGLRHANVMVNGADAFHWLRFEAGVHRVQRVPATEKAGRMHTSTVSITVIPRPADVHVHI 236 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR A+K L+AR Sbjct: 237 AEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELALKRLQAR 296 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGY 335 L + + + A +K Q GS +R+E+IRTYNF Q R+TDHRI TL+ L+ L+G Sbjct: 297 LVQQQLESSEASKQATKKAQQGSLNRNEKIRTYNFVQDRVTDHRIQGGTLHNLDGFLKGG 356 Query: 336 --IDDIINPLLTAHQAKMIGSASE 357 + ++ L H+ + E Sbjct: 357 ESLSGLVEKLQLEHRRSRLRDLLE 380 >gi|14042548|dbj|BAB55295.1| unnamed protein product [Homo sapiens] Length = 238 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 155/232 (66%), Gaps = 3/232 (1%) Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF ++F MY++YAA ++W E L ++ GG + A+I G + MKFE GVHRV Sbjct: 1 MLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRV 60 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GRVHTS TVA+LP+ EI++ I +D+RIDT RASG+GGQHVNTTDSAVR Sbjct: 61 QRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVR 120 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG++ E+SQ +N+ AM LRA+LY + + N+R RK+QIGS RSE Sbjct: 121 IVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSE 180 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ L + + Sbjct: 181 KIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEYADYESLVE 232 >gi|331000229|ref|ZP_08323913.1| peptide chain release factor 2 [Parasutterella excrementihominis YIT 11859] gi|329572395|gb|EGG54048.1| peptide chain release factor 2 [Parasutterella excrementihominis YIT 11859] Length = 280 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 158/285 (55%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + + ++ ++KE+ LE + D+ +C LEI+AG GG+EA Sbjct: 1 MAKEEDDDASLEAVEADINNLKKEVEHLEFQRM----FNQEHDEANCFLEIQAGAGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY ++A + +K E++ ++ D G K I+G + ++ E+G+HR+ Sbjct: 57 QDWASMLERMYIKFAERQSFKPEIVEETEGDVAGIKGCTIKITGDYAYGWLRTETGIHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R +++ R HTS A+V V+PE ++++ D+RIDT RASG+GGQH+ TDSAV Sbjct: 117 VRKSPFDSNARRHTSFASVFVVPEVDDSFEIEVNPADLRIDTFRASGAGGQHIQKTDSAV 176 Query: 245 RITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITHIPTGI+ V+ + +SQHQN+ AM +L++RLY+ E ++ + + K I G Sbjct: 177 RITHIPTGIVAVSQTSRSQHQNKEEAMTILKSRLYEAELRKRQATQQALEDNKSDISWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q R+ D R N+ VL G ++ I L Sbjct: 236 --HQIRSYVLDQSRVKDLRTNVETGNTTAVLDGALESFIEASLKQ 278 >gi|328463686|gb|EGF35274.1| peptide chain release factor 1 [Lactobacillus rhamnosus MTCC 5462] Length = 198 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 109/197 (55%), Positives = 147/197 (74%), Gaps = 1/197 (0%) Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE 220 KE+V I+G V+S++K+E+G HRVQRVP TE++GRVHTS ATV V+PE E+D+ I + Sbjct: 1 KEVVVMITGDNVYSKLKYENGAHRVQRVPVTESAGRVHTSTATVGVMPEYDEVDLKIDPK 60 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYD 279 DIR D R+SG+GGQHVN T SAVR+THIPTGI+V+ E+SQ +NR RAM++LR+R+YD Sbjct: 61 DIRTDVYRSSGAGGQHVNKTSSAVRMTHIPTGIVVSMQDERSQQENRARAMQILRSRVYD 120 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 + NRK IG+GDRSERIRTYN+ Q R+TDHRI LTL KL+ ++ G +D+I Sbjct: 121 YYETENQEKYDQNRKNAIGTGDRSERIRTYNYPQNRVTDHRIGLTLNKLDRIMNGELDEI 180 Query: 340 INPLLTAHQAKMIGSAS 356 I+ L+ QA+ + S + Sbjct: 181 IDALIVHDQAQKMESLN 197 >gi|114609867|ref|XP_001140527.1| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes] gi|114609869|ref|XP_001140612.1| PREDICTED: hypothetical protein isoform 3 [Pan troglodytes] Length = 238 Score = 186 bits (472), Expect = 5e-45, Method: Composition-based stats. Identities = 116/232 (50%), Positives = 155/232 (66%), Gaps = 3/232 (1%) Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF ++F MY++YAA ++W E L ++ GG + A+I G + MKFE GVHRV Sbjct: 1 MLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHASASIGGSEAYRHMKFEGGVHRV 60 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE GRVHTS TVA+LP+ EI++ I +D+RIDT RASG+GGQHVNTTDSAVR Sbjct: 61 QRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVR 120 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG++ E+SQ +N+ AM LRA+LY + + N+R RK+QIGS RSE Sbjct: 121 IVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHLEEETNKRQNARKIQIGSKGRSE 180 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ L + + Sbjct: 181 KIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEYADYESLVE 232 >gi|196013797|ref|XP_002116759.1| hypothetical protein TRIADDRAFT_31311 [Trichoplax adhaerens] gi|190580737|gb|EDV20818.1| hypothetical protein TRIADDRAFT_31311 [Trichoplax adhaerens] Length = 271 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 142/250 (56%), Positives = 189/250 (75%), Gaps = 3/250 (1%) Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 DD + I+EIRA TGG EAALF DLF+MY+RYA+ R WK E LS +N+ GG+KE +A+I Sbjct: 8 DDSNAIIEIRAATGGLEAALFAADLFQMYKRYASHRNWKFEALSFHENEVGGFKEAIASI 67 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G GVF MK ESGVHRVQRVP TE+ GRVHTS ATVA+LP+ EID+ I DI+ DT Sbjct: 68 VGAGVFGEMKLESGVHRVQRVPITESDGRVHTSTATVAILPQPEEIDIVINKNDIKFDTF 127 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVNTTDSAVR+THIPTG++V EKSQH+N+ +A+++L+A+L+D +R++ Sbjct: 128 RAQGAGGQHVNTTDSAVRLTHIPTGMIVAVQEEKSQHRNKAKAIQILQAKLFDEQRQQNQ 187 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLL 344 +R R+ QIG+G RSERIRTYN+ Q RITDHRIN++LY ++ L G ++ +++ LL Sbjct: 188 TDRVHARRQQIGTGARSERIRTYNYQQDRITDHRINMSLYGIDDFLSGNESLNHLMSSLL 247 Query: 345 TAHQAKMIGS 354 ++ K I + Sbjct: 248 EENRMKAIRN 257 >gi|19921226|ref|NP_609617.1| CG5705 [Drosophila melanogaster] gi|7298021|gb|AAF53262.1| CG5705 [Drosophila melanogaster] gi|16769148|gb|AAL28793.1| LD18447p [Drosophila melanogaster] gi|220943136|gb|ACL84111.1| CG5705-PA [synthetic construct] gi|220953196|gb|ACL89141.1| CG5705-PA [synthetic construct] Length = 392 Score = 186 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 122/324 (37%), Positives = 185/324 (57%), Gaps = 5/324 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 A + ++S + ++ + + + D + + + ++ ++ + + Sbjct: 58 RLAQLEGVVSALEQRRVLERHITSAKDMEAEKDED-MRELMREENEVYVDLLGKQDQALL 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D ++ + I + AG GG EA LF +L+ MY Y W+ E +S D Sbjct: 117 QELLTLSDDEEYPALIFGLNAGAGGQEAMLFAQELYEMYTGYFEHMGWEWEEFASEGTDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + +SG F +++E+GVHRVQRVPATE SGR+HTS A++ V+P A+I V I Sbjct: 177 GGLRHASLMVSGEDAFRWLRYEAGVHRVQRVPATEKSGRMHTSTASITVIPRPADIQVHI 236 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR AMK LR+R Sbjct: 237 AEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSR 296 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG- 334 L + + + + A +K Q GS +R+E+IRTYNF Q RITDHRI TL+ L L+G Sbjct: 297 LVQQQLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTLHNLNGFLKGG 356 Query: 335 -YIDDIINPLLTAHQAKMIGSASE 357 + +I L H+ + + + Sbjct: 357 DQLSGLIEKLQLEHRRERLKELLD 380 >gi|255945217|ref|XP_002563376.1| Pc20g08530 [Penicillium chrysogenum Wisconsin 54-1255] gi|211588111|emb|CAP86182.1| Pc20g08530 [Penicillium chrysogenum Wisconsin 54-1255] Length = 423 Score = 186 bits (471), Expect = 6e-45, Method: Composition-based stats. Identities = 116/360 (32%), Positives = 192/360 (53%), Gaps = 30/360 (8%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L ++ R+ ES K + ++P+ + + + +L++++ D N+ Sbjct: 49 LAAEHTKLAERLGESFD----AKTAKRAGELAPVANILKEWVNANDSIVELNSLLTDPNT 104 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D+E+R LA ++ + + + + + L+P+ D C+LEIR G GG EA LF + Sbjct: 105 DAELRSLATEDLESSRDALPSISDRLKKALIPRHPFADLPCLLEIRPGAGGDEAGLFAFE 164 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEI----VATISGRGVFSRMKFESGVHRVQR 187 + RMY + + R + +L D + G ++ V I G + ++ ESGVHRVQR Sbjct: 165 MLRMYVAFCSRRGLRPTIL-KQDTEVGPSEDRLSEAVIEIQANGAYDILRTESGVHRVQR 223 Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIP---------------LEDIRIDTMRASGS 232 VPATE GR HTSA +V VLP E ++ +++R++ MRA G+ Sbjct: 224 VPATETKGRTHTSAVSVMVLPSFPEDTSEMDNALNFEDPSSDYYIDPQEVRVEKMRAGGA 283 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SA+R+THIPT +V+ E+SQ NR +A +VLRA+L + ++ E Sbjct: 284 GGQHVNKTESAIRLTHIPTNTVVSMQDERSQQANRRKAWQVLRAKLAEARQEAREQELMQ 343 Query: 292 NRKL---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 R+ + R ++IRTYNF Q R TDHR +T++ L+ +L G ++ +++ + T Sbjct: 344 LRRGILGGVAKMGRGDKIRTYNFGQSRCTDHRTGITIHNLDGILDGGDGLETVMDSVRTW 403 >gi|116748170|ref|YP_844857.1| peptide chain release factor 2 [Syntrophobacter fumaroxidans MPOB] gi|116697234|gb|ABK16422.1| bacterial peptide chain release factor 2 (bRF-2) [Syntrophobacter fumaroxidans MPOB] Length = 312 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 171/306 (55%), Gaps = 13/306 (4%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 I+ ++ ++ + + + + ++D+ + + ++ + L Sbjct: 2 IVENWQRLSEELRDNELMLEMALEEEDREVLKDVHRKALSLQKEL-----RTVELQQLLG 56 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 + +DDK+ I+ I AG GG+EA + L RMY R+ + + V+++ + ++ G K Sbjct: 57 EENDDKNAIVSINAGAGGTEAQDWAEMLLRMYLRWCEKKSFTVQMVDMLEGEEAGIKSGT 116 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIR 223 T+SG + +K ESG+HR+ R+ +ASGR HTS A V V+PE +I+V+I D+R Sbjct: 117 FTVSGSHAYGLLKGESGIHRLVRISPFDASGRRHTSFAAVLVIPEVDEKIEVEIKQADLR 176 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVN T SAVRITH+PTGI+V +EKSQH+NR A+K+LRARLY+ E+ Sbjct: 177 IDTYRASGAGGQHVNKTSSAVRITHLPTGIVVQCQNEKSQHRNRDIALKILRARLYEREK 236 Query: 283 KRMANERSANRKL--QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDI 339 + + I G+ +IR+Y R I DHR ++ +E VL G IDD Sbjct: 237 RAQQEKLQEAHDSLDDIAWGN---QIRSYVLQPYRLIKDHRTSIEKGNVEGVLDGEIDDF 293 Query: 340 INPLLT 345 I L Sbjct: 294 IEGYLM 299 >gi|121727222|ref|ZP_01680389.1| peptide chain release factor 1 [Vibrio cholerae V52] gi|121630467|gb|EAX62860.1| peptide chain release factor 1 [Vibrio cholerae V52] Length = 193 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 104/188 (55%), Positives = 142/188 (75%), Gaps = 2/188 (1%) Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRAS 230 + +KFESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+S Sbjct: 4 AYGTLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSS 63 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +AM VL AR+ E + A E Sbjct: 64 GAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKAMSVLAARIAQAEESKRAAEI 123 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 S R+ +GSGDRS+RIRTYN+ QGR++DHRINLT+Y+L V++G + +I+P++ HQA Sbjct: 124 SDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVMEGDMQSLIDPVIHEHQA 183 Query: 350 KMIGSASE 357 + + ++ Sbjct: 184 DQLAALAD 191 >gi|146161938|ref|XP_001008252.2| Peptidyl-tRNA hydrolase domain containing protein [Tetrahymena thermophila] gi|146146594|gb|EAR88007.2| Peptidyl-tRNA hydrolase domain containing protein [Tetrahymena thermophila SB210] Length = 452 Score = 185 bits (470), Expect = 7e-45, Method: Composition-based stats. Identities = 123/354 (34%), Positives = 205/354 (57%), Gaps = 8/354 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAY--IKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++ N + +I+ +S+ +L ++ + P+ +Q + Q+L Sbjct: 84 RMKQFHNEYTDIQKILSQEQQQADINLEQLRKKINVLQPLNDVFEKLEQNIKTLQELQKQ 143 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK-DTDDDKSCILEIRAGTGGSE 124 + SD E+ L + E+ ++ I EL++E LLPK DD LE+R G GGSE Sbjct: 144 KEESASDPEMLALIEEEMENSKQLIDELQDECLEQLLPKGKHDDCSEITLEVRGGAGGSE 203 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDD--GGYKEIVATISGRGVFSRMKFESGV 182 ++LF ++F+MY+ + A + ++ + S + G K V +SG ++ +M ESGV Sbjct: 204 SSLFAEEVFKMYQAFFAQQGYQFSIDSFQVDMAINKGCKLGVLKVSGTNIYKKMMNESGV 263 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 H+V RVP TE+ GR+H+S +V + +D + +D++ + MR+ G+GGQHVN +S Sbjct: 264 HKVIRVPETESKGRLHSSTISVV-VMPVVPMDFKVDEKDLKFEFMRSQGAGGQHVNKVES 322 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 A R+TH+PTGI V ++ Q +N+ RA+K+L +L+ VE ++ ++S RK QIG GD Sbjct: 323 ACRVTHLPTGISVLCQDDRQQERNKQRALKLLTEKLFQVEVEKSNQQQSDQRKSQIGGGD 382 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGS 354 RS++IRTYNF QGRITDHR NLTL+ +E +++G +++ I+ ++I S Sbjct: 383 RSDKIRTYNFPQGRITDHRTNLTLFGIEKMMKGEFLEEFIDEYEEKVNNELIES 436 >gi|330807738|ref|YP_004352200.1| peptide chain release factor 2 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327375846|gb|AEA67196.1| Putative Peptide chain release factor 2 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 293 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 101/295 (34%), Positives = 154/295 (52%), Gaps = 12/295 (4%) Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + +DL + + N + + D+ E + + + + D + L+ Sbjct: 5 LADCRDLLDMAVEENDEGAVGDVVAELTRLDENLAK-----LEFRRMFSGEMDMNNAYLD 59 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I+AG+GG+EA + L RMY R+A R + ++ S + G K I G F Sbjct: 60 IQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGW 119 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGG 234 ++ E GVHR+ R ++ R HTS + V V PE + +++I D+RIDT R+SG+GG Sbjct: 120 LRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIEINPADLRIDTYRSSGAGG 179 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSA 291 QHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + Sbjct: 180 QHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALE 239 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G +IR+Y RI D R ++ + VL G ID+ + L Sbjct: 240 DTKSDIGWG---HQIRSYVLDASRIKDLRTSIERSDCDKVLDGDIDEYLIASLKQ 291 >gi|294785988|ref|ZP_06751275.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_27] gi|294486325|gb|EFG33688.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_27] Length = 308 Score = 185 bits (470), Expect = 8e-45, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 161/306 (52%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E D +I S + I K E LL Sbjct: 5 KNIVSRYEKLATEIDDEEVLIDFVESGEASFENELQTKHKILKSD---IEEFEINLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKGYKVSELDFMEGDSVGVKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E GVHR+ R+ +A+ + HTS A+V V+PE E +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEINPTDIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH P+GI+V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELEIK 241 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G IDD I Sbjct: 242 KKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|296203802|ref|XP_002749048.1| PREDICTED: peptide chain release factor 1, mitochondrial [Callithrix jacchus] Length = 488 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 127/405 (31%), Positives = 207/405 (51%), Gaps = 53/405 (13%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L +E + + + L A ++P+ + + +Q ++L + Sbjct: 77 QKYMENLHKESQTLEQCLQHFSVNEEKRRSLNRRQAELAPLAAVYQEIQEAEQAIEELES 136 Query: 65 VIG--------------------------------------------DHNSDSEIRDLAQ 80 + + + ++++LA Sbjct: 137 MCKSRQGSALWPRLECSGAVITDCSLNLPGSSDPPASASQVAGTTGLNKQDEKQLQELAL 196 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--TGGSEAALFVGDLFRMYER 138 E + ++I L +E+ L+PK+ D ILE+ +G TGG F ++F MY+ Sbjct: 197 EERQTLVQKINMLYSELFQSLVPKEKYDKNDVILEVTSGKTTGGDICQQFTREIFDMYQN 256 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV- 197 Y+ + W+ E+L+ + D GG A ISG V+ +K+E G+HRVQR+P S R+ Sbjct: 257 YSCYKHWQFELLNYTPADYGGLHHAAARISGDSVYKHLKYEGGIHRVQRIPEVGLSSRMQ 316 Query: 198 --HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HT +V +LP+ E+DV + +D+RIDT RA G+GGQHVNTTDSAVR+ HIPTG++V Sbjct: 317 RIHTGTMSVIILPQPDEVDVKLDPKDLRIDTFRARGAGGQHVNTTDSAVRLVHIPTGLVV 376 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 E+SQ +N+ A+ VLRARLY ++ ++ + RKLQ+G+G +SERIRTYNF+Q Sbjct: 377 ECQQERSQIRNKEIALSVLRARLYQQIIEKNKCQQHSTRKLQVGTGAQSERIRTYNFTQD 436 Query: 315 RITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSASE 357 R+TDHRI + ++ + G +D +I LL + + I + Sbjct: 437 RVTDHRIAYEVRDIKEFVCGGKALDQLIQRLLQSADEEAIVELLD 481 >gi|315047700|ref|XP_003173225.1| peptide chain release factor 1 [Arthroderma gypseum CBS 118893] gi|311343611|gb|EFR02814.1| peptide chain release factor 1 [Arthroderma gypseum CBS 118893] Length = 438 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 114/381 (29%), Positives = 195/381 (51%), Gaps = 38/381 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + ++P+ + + +D + +L ++ + + Sbjct: 53 ALAAEHATLSAKQTESFE----RAAAKRIGELAPVANALRDWDTAHESITELQGLVNEPS 108 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + L+P+ D C++EIR G GG EA LF Sbjct: 109 TDAELKSLAEDDITTTIGTLSSLSATLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 168 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 ++ RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 169 EMLRMYTSFCSSRGLRTTIIKMEAEDGAGAGAEDRLSEVVMEVETPGSYNILRTEAGVHR 228 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 229 VQRVPATEAKGRTHTSAVSVMILPSFPESNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 288 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+TH+PTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 289 GAGGQHVNKTESAVRLTHVPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 348 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLL 344 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ II + Sbjct: 349 MELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIIESVQ 408 Query: 345 TA--HQA------KMIGSASE 357 Q + + +E Sbjct: 409 NWLVDQEVEALCLEQQAAIAE 429 >gi|149237364|ref|XP_001524559.1| peptide chain release factor 1, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] gi|146452094|gb|EDK46350.1| peptide chain release factor 1, mitochondrial precursor [Lodderomyces elongisporus NRRL YB-4239] Length = 392 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 127/352 (36%), Positives = 197/352 (55%), Gaps = 16/352 (4%) Query: 16 FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 E + ++S +L Y S ++ + + E ++L T+ D ++ Sbjct: 42 LQEEQAQLSSKLDTYDP-ELQITYDRNSHVLKTYDEFSRILLEIRELSTI-----RDPDL 95 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 AQ E+ + + + E+N LLP + C++E+R G GG+EA+LF DL +M Sbjct: 96 ISEAQEELQELVPKYTSIIEELNNKLLPPVKYAECGCMIELRPGVGGNEASLFTDDLMQM 155 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y +A+++ W V+S S N G EI+ +I+ G + ++ ESGVHRVQR+P TE G Sbjct: 156 YLNFASIQSWPALVISRSTNSSGFVNEIILSINQPGAYDVLRHESGVHRVQRIPETENKG 215 Query: 196 RVHTSAATVAVLPEAAE--------IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 RVHTS + V +LP+ ++ ++ ++RIDTMRA G GGQHVNTTDSAVR+ Sbjct: 216 RVHTSTSAVIILPKMSDGNENSLRADEMQFKPGEVRIDTMRAGGKGGQHVNTTDSAVRLV 275 Query: 248 HIPTGIMVTSSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 HIPTGIMV + +SQ QN+ +A +LRARL + ER N + R Q+ S DRS++I Sbjct: 276 HIPTGIMVMQQDERSQPQNKAKAFAILRARLAEKERVEELNRQRQMRTSQVSSTDRSDKI 335 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 RTYN+ Q R+TDHR +L+ + + G +++II+ + + + E Sbjct: 336 RTYNYPQNRVTDHRCGFSLHDIAGCMGGNKLNEIIDKVREVEYKERLQEMLE 387 >gi|110639213|ref|YP_679422.1| peptide chain release factor 2 [Cytophaga hutchinsonii ATCC 33406] gi|110281894|gb|ABG60080.1| bacterial peptide chain release factor 2 (bRF-2) [Cytophaga hutchinsonii ATCC 33406] Length = 358 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 14/343 (4%) Query: 8 QICDLKNRFAEIELRMS-ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ ++K E +S D + + +I YD + DL + Sbjct: 25 KMDEIKA-----EQELSLAPTFWDDSKEAEKILRSIKNKKVWTDPYDALLTKLGDLEALN 79 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + E A+ K + ELE + + +D S +LEI G GG+E+ Sbjct: 80 EFYQAGDIDDKEMDAEFAAVAKVLEELE----FKKMLSAEEDQLSAVLEINPGAGGTESN 135 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L RMY + + V + + + G K I G+ + +K E GVHR+ Sbjct: 136 DWADMLMRMYIMWGEKNGYTVREIVNQPGEVAGIKFASLGIEGQFAYGNLKSEIGVHRLV 195 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R A G+ TS A+V V PE E +++I + D+ DT RA G+GGQ+VN ++AVR Sbjct: 196 RDSPFNADGKRQTSFASVYVYPEVDETINIEINMGDVEWDTFRAGGAGGQNVNKVETAVR 255 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 + H P+G+++ E+SQ QN+ +A+K+L++RLY +E + ++A + D Sbjct: 256 LKHKPSGLIIECQQERSQIQNKDKALKLLKSRLYQIEIDKRNEAKAAVEGTK-KKIDFGS 314 Query: 305 RIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y + I D R + ++ VL G +++ I L Sbjct: 315 QIRNYVLFPYKLIKDVRTGVERTDVDNVLAGDLNEYIKAYLLM 357 >gi|254411738|ref|ZP_05025514.1| peptide chain release factor 2 [Microcoleus chthonoplastes PCC 7420] gi|196181460|gb|EDX76448.1| peptide chain release factor 2 [Microcoleus chthonoplastes PCC 7420] Length = 305 Score = 185 bits (469), Expect = 9e-45, Method: Composition-based stats. Identities = 91/304 (29%), Positives = 150/304 (49%), Gaps = 6/304 (1%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 + Y Q K +D V+ +++ L + + ++ + L D Sbjct: 3 LQQYQQWKSNLEDAKAVLELLELETDEGLLQEAQTNVVKLNREL--DRWELEQLLSGPYD 60 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 +L I AG GG++A + L RMY R+A + +KV++ S+ D+ G K I Sbjct: 61 ANGAVLAINAGAGGTDAQDWAEMLLRMYTRWAENQGYKVQLAEFSEGDEAGIKSATLEIQ 120 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTM 227 G + +K E G HR+ R+ A+G+ TS A V V+P ++D+DIP D+ I T Sbjct: 121 GLRAYGYLKAEKGTHRLVRISPYNANGKRQTSFAGVEVMPILNEDVDLDIPETDLEITTS 180 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G GGQ+VN ++AVR+ HIPT I V + E+SQ QN+ +A+ +L+A+L + +++ A Sbjct: 181 RSGGKGGQNVNKVETAVRVKHIPTDIAVRCTQERSQLQNKEKALALLKAKLLVIAQEQRA 240 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 E + R + +IR Y F + + D R N+ ++ VL G +D I L Sbjct: 241 QEIAEIRGDMVE-AAWGNQIRNYVFHPYQLVKDLRTNVETTGVDDVLNGTLDPFIEAYLR 299 Query: 346 AHQA 349 Sbjct: 300 QENQ 303 >gi|87309088|ref|ZP_01091225.1| peptide chain release factor 2 (RF-2) [Blastopirellula marina DSM 3645] gi|87288079|gb|EAQ79976.1| peptide chain release factor 2 (RF-2) [Blastopirellula marina DSM 3645] Length = 332 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 104/328 (31%), Positives = 159/328 (48%), Gaps = 8/328 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M D + + S + + DL ++ D A+ E Sbjct: 1 MVAPDFWDNQEIAQTVVGQLKSLKSILEPLEACAAAVGDLDAMLEMAEEDDSFDAEAKAE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 V +E E+ +LE L D ++ I A GG++A + L RMY +AA Sbjct: 61 VARLEAELDQLEL----KALLNGQHDACGALVSIHARDGGTDANDWAEMLLRMYSHWAAE 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + VE++ +DN++ G + G + +K ESG+HR+ R+ + G+ TS A Sbjct: 117 HDYTVELIDRADNEEAGINSATFAVRGVMAYGYLKGESGMHRLVRISPFNSEGKRQTSFA 176 Query: 203 TVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 V V PE +V+I ED+RIDT RASG+GGQHVN TDSA+R+TH+PTG++V +E+ Sbjct: 177 AVDVSPEIPDSEEVEIDEEDVRIDTYRASGAGGQHVNKTDSAIRLTHLPTGVVVQCQNER 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQH+NR +A K+LR+R+ +E +R E +A K Q G +IR Y R+ D Sbjct: 237 SQHKNRAQAWKMLRSRIARIEEERREAEEAARYKTQAKVG-FGSQIRNYFLHPDQRVKDA 295 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R + V+ G I ++ L Sbjct: 296 RTGHYVGSFHAVMDGDIQGFLDAYLRWR 323 >gi|34762942|ref|ZP_00143922.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887403|gb|EAA24493.1| Bacterial Peptide Chain Release Factor 2 (RF-2) [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 308 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 112/306 (36%), Positives = 161/306 (52%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E D +I S + I K E LL Sbjct: 5 KNIVSRYEKLATEIDDEEVLIDFVESGEASFENELQTKHKILKSD---IEEFEINLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDINNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKGYKVSELDFMEGDSVGIKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E GVHR+ R+ +A+ + HTS A+V V+PE E +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEINPADIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH P+GI+V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELEIK 241 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G IDD I Sbjct: 242 KKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|237738152|ref|ZP_04568633.1| peptide chain release factor 2 [Fusobacterium mortiferum ATCC 9817] gi|229420032|gb|EEO35079.1| peptide chain release factor 2 [Fusobacterium mortiferum ATCC 9817] Length = 308 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 106/311 (34%), Positives = 164/311 (52%), Gaps = 14/311 (4%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++++ + + E+ L + +D + + +L + + LL Sbjct: 5 KELVAEFKNLVAELENEEVLIEFVEQGETDFQEELEEKHIILGKDV------EHFDTRLL 58 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D + I+ I +G GG+EA + L+RMY R+ + +K+K+ + D G K Sbjct: 59 LDGEYDSNNAIVTIHSGAGGTEACDWADMLYRMYSRWCSDKKYKISEMDFMPGDSVGIKS 118 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLED 221 I + G F +K E GVHR+ R+ +A+ + HTS A+V V+PE + +V+I D Sbjct: 119 ITFMVEGMNAFGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDDSIEVNIDPSD 178 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 IRIDT RASG+GGQHVN TDSAVRITH PTGI+V E+SQ NR AMK+L+++L ++ Sbjct: 179 IRIDTYRASGAGGQHVNMTDSAVRITHFPTGIVVTCQRERSQLSNRETAMKLLKSKLIEL 238 Query: 281 ERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYID 337 E K+ E + IG G+ +IR+Y F + DHR N ++ V+ G ID Sbjct: 239 EMKKKEEELKKLQGEQSDIGWGN---QIRSYVFQPYTLVKDHRTNCESGNIKAVMDGDID 295 Query: 338 DIINPLLTAHQ 348 IN L ++ Sbjct: 296 IFINGYLRWNK 306 >gi|146283094|ref|YP_001173247.1| peptide chain release factor 1 [Pseudomonas stutzeri A1501] gi|145571299|gb|ABP80405.1| peptide chain release factor 1 [Pseudomonas stutzeri A1501] Length = 270 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 96/253 (37%), Positives = 142/253 (56%), Gaps = 7/253 (2%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + D +C L+I+AG+GG+EA + L RMY R+A R + E++ S+ + Sbjct: 19 EFRRMFSHEMDPNNCYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFSAEIVELSEGEV 78 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVD 216 G K I G F ++ E GVHR+ R ++ R HTS + V V PE + +++ Sbjct: 79 AGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGARRHTSFSAVFVSPEIDDKVEIE 138 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRA Sbjct: 139 INPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVACQNERSQHANKDTAMKMLRA 198 Query: 276 RLYDVERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LY++E ++ + + K IG G +IR+Y RI D R + + VL Sbjct: 199 KLYELEMQKRNAASQALEDSKSDIGWG---HQIRSYVLDDSRIKDLRTGVERSDCQKVLD 255 Query: 334 GYIDDIINPLLTA 346 G +D + L Sbjct: 256 GDLDGYLEASLKQ 268 >gi|284053267|ref|ZP_06383477.1| peptide chain release factor 2 [Arthrospira platensis str. Paraca] Length = 309 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 88/304 (28%), Positives = 143/304 (47%), Gaps = 10/304 (3%) Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + + ++ + ++ + +S ++ V + L D Sbjct: 5 QDWRKTLEDTGAIAELLELEDDESLRQEAESNVVHLGRDI-----DRWELQQLLSGPYDR 59 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 +L I AG GG++A + L RMY R+ + +KV + S+ D+ G K + G Sbjct: 60 SGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEAGIKSATLEMEG 119 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTM 227 + +K E G HR+ R+ A+G+ TS A V ++P E I++DIP +D+ I T Sbjct: 120 PYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPILDEGAINLDIPEKDLEITTS 179 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G GGQ+VN ++AVRI HIPTGI V + E+SQ QNR +AM +L+A+L V +++ A Sbjct: 180 RAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKAKLLVVAQEQRA 239 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + R + +IR Y F + + D R + V+ G +D I L Sbjct: 240 QAIAEIRGDLVE-AAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNGELDGFIQAYLR 298 Query: 346 AHQA 349 Sbjct: 299 QENQ 302 >gi|261188569|ref|XP_002620699.1| peptide chain release factor 1 [Ajellomyces dermatitidis SLH14081] gi|239593183|gb|EEQ75764.1| peptide chain release factor 1 [Ajellomyces dermatitidis SLH14081] gi|239613247|gb|EEQ90234.1| peptide chain release factor 1 [Ajellomyces dermatitidis ER-3] Length = 438 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 115/385 (29%), Positives = 192/385 (49%), Gaps = 43/385 (11%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + N A + +++E+ + ++ + ++ + +L+ ++ D + Sbjct: 51 SIANEHATLTSKLAETFDPKTAKRAG----ELATTARALKKWEDANETIAELNNLLKDPS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+ LA ++ + + L + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSELHSLALEDLQSTTTSLAILSTNLKQALIPRHPFADLPCLLELRPGAGGEEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGYKEI----VATISGRGVFSRMKFESGVH 183 +L RMY + + R V +L S + GG ++ V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCSNRGLHVTLLKKESENAGASGGSEDRLVEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI---------------DVDIPLEDIRIDTMR 228 RVQRVPATE+ GR HTSA +V +LP D I +++ ++ MR Sbjct: 227 RVQRVPATESKGRTHTSAVSVVILPSFPNNGEEGDSEMNFDDPNSDYYIDPQEVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ R+ Sbjct: 287 AGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQ---IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 E R+ +G R ++IRTYNF Q R TDHR T++ L +++G ++ I++ Sbjct: 347 EMVKLRRGAMGGVGKMGRGDKIRTYNFGQNRCTDHRSGFTVHNLGSIMEGGDGLEKIMDS 406 Query: 343 LLTA-----------HQAKMIGSAS 356 + + + A+ Sbjct: 407 VRGWLVDQEVDNVFAEEQMKLAQAA 431 >gi|33241929|ref|NP_876870.1| peptide chain release factor 2 [Chlamydophila pneumoniae TW-183] gi|33236439|gb|AAP98527.1| translation releasing factor RF-2 [Chlamydophila pneumoniae TW-183] Length = 253 Score = 185 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 96/245 (39%), Positives = 141/245 (57%), Gaps = 9/245 (3%) Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D SC L I AG GG+E+ +V LFRMY R+A +W +EV+ D + G K + Sbjct: 7 DKNSCFLTINAGAGGTESCDWVEMLFRMYSRWATKHQWALEVVDRLDGEVVGIKHVTVKF 66 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDT 226 SG + K E GVHR+ R+ +++G+ HTS A+V V PE + ++I D+RIDT Sbjct: 67 SGMYAYGYAKAERGVHRLVRISPFDSNGKRHTSFASVDVFPEIDDQIKIEIRPNDLRIDT 126 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+SG+GGQHVN T+SAVRITH+P+G++V +E+SQ QNR MK+L+A+LY + Sbjct: 127 FRSSGAGGQHVNVTESAVRITHLPSGVVVSCQNERSQIQNRESCMKMLQAKLYQQVLQER 186 Query: 286 ANERSANRKL--QIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIIN 341 ++S +RK +I G +IR Y F + D R ++ +L G +D+ I Sbjct: 187 LEKQSLDRKDKKEIAWG---SQIRNYVFQPYTLVKDVRTGHETGNVQAMLDGELLDEFIK 243 Query: 342 PLLTA 346 L Sbjct: 244 AYLAE 248 >gi|302830560|ref|XP_002946846.1| hypothetical protein VOLCADRAFT_103257 [Volvox carteri f. nagariensis] gi|300267890|gb|EFJ52072.1| hypothetical protein VOLCADRAFT_103257 [Volvox carteri f. nagariensis] Length = 361 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 145/342 (42%), Positives = 203/342 (59%), Gaps = 37/342 (10%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 I + +DL ++ D DS +R +A+ E ++++ L + L+P+D D Sbjct: 2 IRGMASSLLQLEDLAALLKDP--DSRVRAMAEEEGRELQQQAAGLTRRLLLALVPRDPRD 59 Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATI 167 ++ +LE+RAG GG EAALF G+L MY ++A R W +V+ + ++ GG K +VA + Sbjct: 60 GRAALLEMRAGAGGQEAALFCGELLEMYRKFAMSRGWSWQVVELTASEVPGGVKHVVAAV 119 Query: 168 SGRG-------------------------------VFSRMKFESGVHRVQRVPATEASGR 196 + V+ + ESGVHRVQRVP TEA GR Sbjct: 120 AAGRGAGRRAGGIGDGGEGYDGGEGNSDQDGDAIGVYGTLLPESGVHRVQRVPVTEAQGR 179 Query: 197 VHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 VHTS V VLP+A E+DV + ED+RI+TMRASG+GGQHVN TDSAVRITH+PTG++V Sbjct: 180 VHTSTVAVVVLPQADEVDVKLRDEDLRIETMRASGAGGQHVNVTDSAVRITHVPTGLVVS 239 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 +E+SQH NR A+K+LRARLYD+E ++ A E R + S DRSERIRTYNF QGR Sbjct: 240 CQNERSQHLNRAAALKILRARLYDLEMQKRAKEMDEQRSALVASADRSERIRTYNFPQGR 299 Query: 316 ITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSA 355 +TDHRI+LTL+ L+ VL G + ++ L A + + + Sbjct: 300 VTDHRIHLTLHDLDSVLVGGEGLQRLMGVLRAAREEEALRRL 341 >gi|307069624|ref|YP_003878101.1| putative peptide chain release factor RF-1 [Candidatus Zinderia insecticola CARI] gi|306482884|gb|ADM89755.1| putative peptide chain release factor RF-1 [Candidatus Zinderia insecticola CARI] Length = 345 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 119/324 (36%), Positives = 184/324 (56%), Gaps = 10/324 (3%) Query: 21 LRMSESPSVDAYIKLTEEYA---AISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77 ++ + + K + I PII ++Y ++ + ++ I D + D Sbjct: 25 KKIQDKNIFNNLKKYKKICKNIFKIRPIIKYYNLYKKEINKIKENKKFINDKEFKNIALD 84 Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + I + + + + + +LEIRA +GG EAALFV DL++MY Sbjct: 85 EIKKCKDKIFFLN-----KKIEKNIIINKNINNKILLEIRAASGGEEAALFVKDLYKMYF 139 Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 ++ WK+++LS +++ GYKEI+ I G +S +K ESG HRVQR+P TE+ +V Sbjct: 140 NFSQKNNWKIKILSFIKSNNNGYKEIIIQIYGLNSYSLLKNESGNHRVQRIPITESHDKV 199 Query: 198 HTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 HTS T+AV+ + + D++I T +ASG+GGQHVN TDSAVRI HIPT I V Sbjct: 200 HTSTCTIAVINKIKNNKKILINNKDLKIHTFKASGAGGQHVNKTDSAVRIFHIPTKITVE 259 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 S +SQH N+ A+K+L+ ++ + + + N+ RK IG+G RSE+IRTYNF Q R Sbjct: 260 CQSNRSQHINKKNALKILKYKILKINKNSIKNKEDKFRKSLIGTGKRSEKIRTYNFPQNR 319 Query: 316 ITDHRINLTLYKLEYVLQGYIDDI 339 +T+H+INLT+Y L +L G ++ I Sbjct: 320 VTNHKINLTVYNLNSILNGNLEKI 343 >gi|332287121|ref|YP_004422022.1| peptide chain release factor 2 [Chlamydophila psittaci 6BC] gi|325506910|gb|ADZ18548.1| peptide chain release factor 2 [Chlamydophila psittaci 6BC] gi|328914361|gb|AEB55194.1| peptide chain release factor 2 [Chlamydophila psittaci 6BC] Length = 294 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 106/285 (37%), Positives = 151/285 (52%), Gaps = 9/285 (3%) Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++ D + ++ + +E L D C L I AG GG+E+ + Sbjct: 9 NDGDVSADPELREDLEKEFAICENILSEWETQRLLSGEVDKNPCFLTINAGAGGTESCDW 68 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V LFRMY R+AA +WKVEV+ + D G K + SG + K E GVHR+ R+ Sbjct: 69 VEMLFRMYCRWAAQHQWKVEVIDRQEGDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVRI 128 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V P EI++DI D+RIDT R+SG+GGQHVN TDSAVRIT Sbjct: 129 SPFDSNAKRHTSFASVDVYPEIDDEIEIDIRPNDLRIDTFRSSGAGGQHVNVTDSAVRIT 188 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRSE 304 HIPTGIMV E+SQ QNR MK+LRAR+Y + ++ +RK +I G Sbjct: 189 HIPTGIMVSCQRERSQIQNRESCMKMLRARMYQQILQERLEKQLIDRKNKKEIAWG---S 245 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 +IR Y F + D R ++ ++ G +DD + L + Sbjct: 246 QIRNYVFQPYTLVKDVRTGHETGNVQAMMDGELLDDFVKAYLAEY 290 >gi|119625009|gb|EAX04604.1| hCG2025689 [Homo sapiens] Length = 238 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 114/232 (49%), Positives = 153/232 (65%), Gaps = 3/232 (1%) Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF ++F MY++YAA ++W E L ++ GG + A+I G + MKFE GVHRV Sbjct: 1 MLFTSEIFDMYQQYAAFKRWHFETLEYFPSEVGGLRHASASIGGSEAYRHMKFEGGVHRV 60 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP TE G VHTS TVA+LP+ EI++ I +D+RIDT RASG+G QHVNTTDSAVR Sbjct: 61 QRVPKTEKQGCVHTSTMTVAILPQPTEINLVINPKDLRIDTKRASGAGEQHVNTTDSAVR 120 Query: 246 ITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTG++ E+SQ +N+ AM LRA+LY + + N+R RK+QIGS RSE Sbjct: 121 IVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHVEEEINKRQNARKIQIGSKGRSE 180 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 +IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ L + + Sbjct: 181 KIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELVQSLKEYANYESLVE 232 >gi|327357433|gb|EGE86290.1| peptide chain release factor 1 [Ajellomyces dermatitidis ATCC 18188] Length = 438 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 114/364 (31%), Positives = 188/364 (51%), Gaps = 32/364 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + N A + +++E+ + ++ + ++ + +L+ ++ D + Sbjct: 51 SIANEHATLTSKLAETFDPKTAKRAG----ELATTARALKKWEDANETIAELNNLLKDPS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+ LA ++ + + L + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSELHSLALEDLQSTTTSLAILSTNLKQALIPRHPFADLPCLLELRPGAGGEEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGYKEI----VATISGRGVFSRMKFESGVH 183 +L RMY + + R V +L S + GG ++ V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCSNRGLHVTLLKKESENAGASGGSEDRLVEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI---------------DVDIPLEDIRIDTMR 228 RVQRVPATE+ GR HTSA +V +LP D I +++ ++ MR Sbjct: 227 RVQRVPATESKGRTHTSAVSVVILPSFPNNGEEGDSEMNFDDPNSDYYIDPQEVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ R+ Sbjct: 287 AGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQ---IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 E R+ +G R ++IRTYNF Q R TDHR T++ L +++G ++ I++ Sbjct: 347 EMVKLRRGAMGGVGKMGRGDKIRTYNFGQNRCTDHRSGFTVHNLGSIMEGGDGLEKIMDS 406 Query: 343 LLTA 346 + Sbjct: 407 VRGW 410 >gi|311747486|ref|ZP_07721271.1| peptide chain release factor 2 [Algoriphagus sp. PR1] gi|126574844|gb|EAZ79215.1| peptide chain release factor 2 [Algoriphagus sp. PR1] Length = 315 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 152/315 (48%), Gaps = 8/315 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 I + + Y+ ++ +DL + +++D + E + + ELE Sbjct: 1 MKQIQARKTWTTSYENLEKAIEDLEVLYEFYSADEVSEEEMSREFEKAKSTVEELEL--- 57 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + +D + +LEI G GG+E+ + L RMY + +KV + D Sbjct: 58 -KKMLSSEEDQLNAVLEINPGAGGTESNDWASILMRMYIMWGEKNGYKVREVDVQQGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K G + +K E+GVHR+ R+ ++ GR HTS A+V PE I++DI Sbjct: 117 GIKSCTLEFEGPLAYGFLKSETGVHRLVRISPFDSGGRRHTSFASVYAYPEVDDSIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRAR 276 DI + T R+ G+GGQ+VN ++ V++TH PTGI +V E+SQ NR +AM++L++R Sbjct: 177 NPADIELHTSRSGGAGGQNVNKVETKVQLTHKPTGIVVVCQIERSQLANREKAMQMLKSR 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 L+ +E ++ E + ++ D +IR Y + + D R ++VL G Sbjct: 237 LFQLEVEKRNAEIAKIESSKLR-VDFGSQIRNYVLHPYKLVKDARTGHETSDTQHVLDGG 295 Query: 336 IDDIINPLLTAHQAK 350 +++ + L A + Sbjct: 296 LNEFMKAYLLAQSEE 310 >gi|73666975|ref|YP_302991.1| peptide chain release factor 2 [Ehrlichia canis str. Jake] gi|72394116|gb|AAZ68393.1| bacterial peptide chain release factor 2 (bRF-2) [Ehrlichia canis str. Jake] Length = 335 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 97/340 (28%), Positives = 172/340 (50%), Gaps = 18/340 (5%) Query: 16 FAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 ++ ++ S + + E A +S II+ + +++ +L V+ + + Sbjct: 2 LVDLNVQCSSTSLWTDNALAQNILSERARVSKIITSFTELEEEFNYYTELLDVVKNDTDE 61 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 + L + +E+E L + D C +EI++G GG+E+ + L Sbjct: 62 LLNDIEIGLTKLKERIQKKEVE------CLFSNEADQNDCFIEIQSGAGGTESNDWSCML 115 Query: 133 FRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 RMY R+A + E++ D ++ G K ++G + K ESG+HR+ R+ Sbjct: 116 LRMYVRWAEIYHNFTTEIVYKLDGEEVGIKSATIKVTGDNAYGWSKTESGIHRLVRISPF 175 Query: 192 EASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++ + HT+ +++ V P E +++ +D+RIDT RASG+GGQHVN T+SAVRITHIP Sbjct: 176 NSNAKRHTTFSSILVSPITDENINIETLDKDLRIDTYRASGAGGQHVNKTESAVRITHIP 235 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSERIR 307 +GI+V + +SQHQN A +L++RLY ++ + + + ++ IG G+ +IR Sbjct: 236 SGIVVQCQNNRSQHQNLAEAHNLLKSRLYQLKLQEKEKKMAEEHNKRCNIGWGN---QIR 292 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y + + D R + + VL G +D I LTA Sbjct: 293 SYIMHPYQMVKDVRTGHEIGNVNSVLDGNLDPFIISALTA 332 >gi|317151025|ref|XP_001824394.2| peptide chain release factor 1 [Aspergillus oryzae RIB40] Length = 427 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 110/365 (30%), Positives = 193/365 (52%), Gaps = 28/365 (7%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 +++ ++ S ++ + ++PI + + +D+ + +L+ ++ D ++D E Sbjct: 53 EHSKLSAHLASSFDG----RIAKRVGELAPIANVLDEWDRANESISELNALLFDPDTDLE 108 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 ++ LA ++ ++ + + + L+P+ C+LEIR G GG EA LF +L R Sbjct: 109 LKSLAIEDLETVKAALPTISENLKKALVPRHPFAALPCLLEIRPGAGGDEAGLFAFELLR 168 Query: 135 MYERYAALRKWKVEVLSSSDND---DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 MY + + R ++ V+ D + E V + G + ++ ESGVHRVQRVPAT Sbjct: 169 MYTAFCSRRGFRSNVIKLEVGDGPAEDRLNEAVMEVEADGAYEILRTESGVHRVQRVPAT 228 Query: 192 EASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGSGGQH 236 E GR HTSA +V VLP D + +++R + MRA G+GGQH Sbjct: 229 ETKGRTHTSAVSVMVLPSFPETGGAMDNALNFDDPNSDYYVDPQEVRSEKMRAGGAGGQH 288 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+TH+PTGI+V+ +SQH NR +A ++LRARL + ++ + R+ Sbjct: 289 VNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRARLAEARQEAREQKFVELRRG 348 Query: 296 ---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAK 350 + R ++IRTYN+ Q R TDHR ++T++ L VL G ++ ++ + + + Sbjct: 349 VLGGVARMGRGDKIRTYNYGQSRCTDHRSSITIHNLNDVLDGGEGLETVMESVRSWLIDQ 408 Query: 351 MIGSA 355 + + Sbjct: 409 EVAAL 413 >gi|298244286|ref|ZP_06968092.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963] gi|297551767|gb|EFH85632.1| peptide chain release factor 2 [Ktedonobacter racemifer DSM 44963] Length = 337 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 98/328 (29%), Positives = 171/328 (52%), Gaps = 10/328 (3%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDHNSDSEIRDLAQIE 82 + K ++ + +++ ++Q + +DL + + + D +++ Sbjct: 2 QPDFWSDNRKAQAHMQQLNALREEVTTWEQLATQLKDLQELALMLEEEPDDDMQAEVAQS 61 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + IE++I +LE + L+ D+K+ IL I AG+GG +A + L RMY R+A Sbjct: 62 IHPIEEQIEKLE----FALMLSGEHDEKNAILSIHAGSGGVDAQDWAEMLLRMYLRWADQ 117 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +++ ++ S+ ++ G K I GR + ++ E+G HR+ R+ +A+ R TS A Sbjct: 118 HRFRTQIYDYSEGEEAGIKSATVEIEGRFAYGYLRSEAGTHRLIRLSPFDAAHRRQTSFA 177 Query: 203 TVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 V ++P+ I EDI +DT R++G+GGQHVN TDSAVR+ H+P+GI+V +E+ Sbjct: 178 KVELMPDIENTIEISIRPEDIEVDTYRSTGAGGQHVNKTDSAVRMRHVPSGIVVTCQNER 237 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRI-TDH 319 SQ QNR A+K+L+ARL+++E+K+ E + + + D +IR+ I DH Sbjct: 238 SQLQNREVALKILKARLFELEQKKHDEEAARLKGEHV-QADFGTQIRSVIVHPYNIAKDH 296 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAH 347 R N L G +D I+ L Sbjct: 297 RTNHETSDTTAYLAGNVDPFIHAYLQEQ 324 >gi|194860855|ref|XP_001969666.1| GG23822 [Drosophila erecta] gi|190661533|gb|EDV58725.1| GG23822 [Drosophila erecta] Length = 392 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 120/324 (37%), Positives = 184/324 (56%), Gaps = 5/324 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 A + ++S + +++ + + + D + + + ++ ++ + + Sbjct: 58 RLAQLEGVVSALEQRRVLERQITSAKDMEAEKDED-MRELMREENEVYVDLLGKQDQALL 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D + + I + AG GG EA LF +L+ MY + W+ E +S D Sbjct: 117 QELLTLSDDEMYPALIFGLNAGAGGQEAMLFAQELYEMYTGFFEHMGWEWEEFASEITDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + +SG F ++ E+GVHRVQRVPATE SGR+HTS A++ V+P A+I V I Sbjct: 177 GGLRHASLMVSGEDAFRWLRHEAGVHRVQRVPATEKSGRMHTSTASITVIPRPADIHVHI 236 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR AMK LR+R Sbjct: 237 AEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMKRLRSR 296 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG- 334 L + + + A +K Q GS +R+E+IRTYNF Q RITDHRI T++ L+ L+G Sbjct: 297 LVQQQLESAEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTMHNLDGFLKGG 356 Query: 335 -YIDDIINPLLTAHQAKMIGSASE 357 + +I L H+ + + + Sbjct: 357 DQLCGLIEKLQLEHRKERLKELLD 380 >gi|115380059|ref|ZP_01467103.1| peptide chain release factor 2, programmed [Stigmatella aurantiaca DW4/3-1] gi|115362934|gb|EAU62125.1| peptide chain release factor 2, programmed [Stigmatella aurantiaca DW4/3-1] Length = 309 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 13/302 (4%) Query: 48 KISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + + Q L + + N ++ ++ + + ++ + + Sbjct: 3 AFDKALRGLDDAQTLMELAREANDEASAQEAEGL-----LPTLEGDIAKLELARMLSGEN 57 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D +C ++I AG GG+++ + L RMY R+ R W+VE+ ++ G+K + I Sbjct: 58 DRSNCFMDINAGAGGTDSMDWAAMLMRMYTRFCEERGWEVEISDMVAGEEAGFKNVSLHI 117 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDT 226 G + +K E GVHR+ R+ +A+ R T+ A+V V PE I +DIP +D + Sbjct: 118 RGEYAYGYLKAEVGVHRLVRISPFDANARRQTAFASVDVYPEVDDSIRIDIPEKDYELKF 177 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 +R G+GGQ VN T S ++ H+PT I++ +E+SQ N+ A K+LRARLY++E K+ Sbjct: 178 IRGGGAGGQKVNKTSSTAQLRHLPTNILITCQTERSQSANKDMAFKILRARLYELELKKR 237 Query: 286 ANER--SANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 ER + +K I G +IR+Y + R + D R + ++ VL G ++ + Sbjct: 238 EAERDAAEAQKKDISFG---SQIRSYVLAPYRMVKDLRTGVETGNVDAVLDGDLEQFVTA 294 Query: 343 LL 344 L Sbjct: 295 QL 296 >gi|296804966|ref|XP_002843310.1| peptide chain release factor 1 [Arthroderma otae CBS 113480] gi|238845912|gb|EEQ35574.1| peptide chain release factor 1 [Arthroderma otae CBS 113480] Length = 438 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 114/370 (30%), Positives = 193/370 (52%), Gaps = 30/370 (8%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L A + + +ES ++P+ + + +D+ + +L +I + ++ Sbjct: 54 LAAEHATLSTKQAESFE----RAAARRLGELAPVANALKDWDRANESITELQGLINEPST 109 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D+E++ LAQ ++ + + L + L+P+ D C++EIR G GG EA LF + Sbjct: 110 DAELKSLAQDDITSTIATLSSLSATLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAAE 169 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHRV 185 + RMY + + R + ++ D G E V I G ++ ++ E+GVHRV Sbjct: 170 MLRMYMAFCSSRGLRTAIIKKETEDGVGAGAEERLSEAVMEIETPGSYNILRTEAGVHRV 229 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEID--------------VDIPLEDIRIDTMRASG 231 QRVPATEA GR HTSA +V +LP + + + +D++ + RASG Sbjct: 230 QRVPATEAKGRTHTSAVSVMILPSFPDNNQGDSPLNFDDPNSDYYVNPQDVQSEKFRASG 289 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 290 AGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEMM 349 Query: 291 ANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLT 345 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ I+ + Sbjct: 350 ELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIMESVQN 409 Query: 346 AHQAKMIGSA 355 + + + Sbjct: 410 WLVDQEVEAL 419 >gi|260792424|ref|XP_002591215.1| hypothetical protein BRAFLDRAFT_62179 [Branchiostoma floridae] gi|229276418|gb|EEN47226.1| hypothetical protein BRAFLDRAFT_62179 [Branchiostoma floridae] Length = 353 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 132/328 (40%), Positives = 207/328 (63%), Gaps = 6/328 (1%) Query: 31 AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI-GDHNSDSEIRDLAQIEVLAIEKE 89 + +L + + + I+ K+ + ++E ++ ++ G + ++E+RDLA E A E + Sbjct: 13 EHRRLVQRWEELRHIVEKVQQVETTQKELVEVEKLLSGLEDGETEMRDLALQEKEAYEND 72 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 ++ LE+EI LL+P D D+ ILE+ AG GG EA LF D+F MY +YAA + W ++V Sbjct: 73 MKHLEDEILTLLVPADEADENDIILEVVAGVGGQEAMLFTSDMFEMYCQYAAYKNWHMQV 132 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L+ + GG + A+I G + +K E+GVHRVQRVP TE +GRVHTS TVAVLP+ Sbjct: 133 LTMDTSTLGGLRHATASIKGLNAYKLLKLEAGVHRVQRVPKTEKAGRVHTSTMTVAVLPQ 192 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT--GIMVTSSEKSQHQNRL 267 EID + +I+T +ASG+GGQHVN T+SAVRI HIPT + E+SQ +NR Sbjct: 193 PKEIDNTWDKSEFKIETKKASGAGGQHVNKTESAVRIVHIPTGENAVECQQERSQLRNRA 252 Query: 268 RAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYK 327 AM ++ARLY ++ + +++ R+ Q+G+ RSE+IRTYNF+Q R+TDHR + ++ Sbjct: 253 IAMTTIQARLYQMKLDQQRSQQQLARQQQMGTAARSEKIRTYNFTQDRVTDHRAGVNMFN 312 Query: 328 LEYVLQGY--IDDIINPLLTA-HQAKMI 352 L+ L G +D++I+ + H+ +++ Sbjct: 313 LQDFLLGGDRLDEMIHTVQQHLHREEVL 340 >gi|237740205|ref|ZP_04570686.1| bacterial Peptide Chain Release Factor 2 [Fusobacterium sp. 2_1_31] gi|262068161|ref|ZP_06027773.1| peptide chain release factor 2 [Fusobacterium periodonticum ATCC 33693] gi|294782698|ref|ZP_06748024.1| peptide chain release factor 2 [Fusobacterium sp. 1_1_41FAA] gi|229422222|gb|EEO37269.1| bacterial Peptide Chain Release Factor 2 [Fusobacterium sp. 2_1_31] gi|291378140|gb|EFE85658.1| peptide chain release factor 2 [Fusobacterium periodonticum ATCC 33693] gi|294481339|gb|EFG29114.1| peptide chain release factor 2 [Fusobacterium sp. 1_1_41FAA] Length = 308 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 110/306 (35%), Positives = 165/306 (53%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E +D +I S + ++ K ++ E LL Sbjct: 5 KNIVSRYEKLATEVEDEEVLIDFVESGESSFENE---LIEKHKTLKYDIEEFEVNLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKNYKVSELDFMEGDSVGVKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E GVHR+ R+ +A+ + HTS A+V V+PE + +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDDNVEVEINPADIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH PTG++V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPTGVVVTCQKERSQLSNRETAMKMLKSKLLEIELK 241 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G IDD I Sbjct: 242 KKEEEMKKIQGEQTDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|302653122|ref|XP_003018392.1| hypothetical protein TRV_07586 [Trichophyton verrucosum HKI 0517] gi|291182035|gb|EFE37747.1| hypothetical protein TRV_07586 [Trichophyton verrucosum HKI 0517] Length = 438 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 194/371 (52%), Gaps = 30/371 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + I+P+ + + +D + +L +I + + Sbjct: 53 ALAAEHATLTAKQAESFE----RAAAKRIGEIAPVANALKDWDTAHESITELQGLIDEPS 108 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + L+P+ D C++EIR G GG EA LF Sbjct: 109 TDTELKSLAEDDITTTIGTLSSLSATLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 168 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 ++ RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 169 EMLRMYTSFCSSRGLRTTIIKMEAEDGVGAGAEERLSEVVMEVETPGSYNILRTEAGVHR 228 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 229 VQRVPATEAKGRTHTSAVSVMILPSFPENNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 288 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 289 GAGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 348 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLL 344 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ II + Sbjct: 349 MELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIIESVQ 408 Query: 345 TAHQAKMIGSA 355 + + + + Sbjct: 409 SWLVDQEVEAL 419 >gi|56751121|ref|YP_171822.1| peptide chain release factor 2 [Synechococcus elongatus PCC 6301] gi|56686080|dbj|BAD79302.1| peptide chain release factor RF-2 [Synechococcus elongatus PCC 6301] Length = 304 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 9/306 (2%) Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + Q + + ++ + + + + L D + Sbjct: 2 DWQQLDADITAILELLAIEPDPALFEEAETNVQRLQRELDQW-----ELQQLLSGPYDAE 56 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 IL I AG GG++A + L RMY R+A + +KV + S+ ++ G K + I G+ Sbjct: 57 GAILSINAGAGGTDAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGK 116 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRA 229 + +K E G HR+ R+ A+ + TS A V V+P +ID++IP +D+ I T RA Sbjct: 117 YAYGYLKAEKGTHRLVRISPFNANDKRQTSFAGVEVMPVLDTDIDLEIPEKDLEITTSRA 176 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 G GGQ+VN ++AVRI H+PTG+ V + E+SQ QN+ +A+ +LRA+L V +++ A E Sbjct: 177 GGKGGQNVNKVETAVRIVHLPTGLAVRCTEERSQLQNKEKALVILRAKLLVVLQEQKAKE 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + R + +IR Y F + + D R + + V+ G ++ I L Sbjct: 237 VAEIRGDMVE-AAWGNQIRNYVFHPYQLVKDLRTGVETKAIADVMNGDLNPFIQAYLRQD 295 Query: 348 QAKMIG 353 +I Sbjct: 296 NQMLIE 301 >gi|269123112|ref|YP_003305689.1| peptide chain release factor 2 [Streptobacillus moniliformis DSM 12112] gi|268314438|gb|ACZ00812.1| bacterial peptide chain release factor 2 (bRF- 2) [Streptobacillus moniliformis DSM 12112] Length = 362 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 116/321 (36%), Positives = 172/321 (53%), Gaps = 11/321 (3%) Query: 28 SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIE 87 + + +E + + I IS + Q L E + +E + Sbjct: 48 DQNKSQNVLKEISLLKERIKDISKLLTLNENIQILLEFYKQEEISLEELETETLEFIKEL 107 Query: 88 KEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKV 147 ++ LL D S IL I AG GG+E+ +V L+RMY+R+A K+KV Sbjct: 108 -------DKFKIKLLLNGKYDKNSAILTINAGAGGTESCDWVSMLYRMYDRWAMQNKFKV 160 Query: 148 EVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL 207 EVL D+ G K I +I G + + E GVHR+ R+ +++ R HTS A V V+ Sbjct: 161 EVLDILAGDEAGIKSITLSIKGDYAYGYLDCEKGVHRLVRISPFDSNARRHTSFAAVNVI 220 Query: 208 PEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 PE + +V++ ED++IDT RASG+GGQHVNTTDSAVRITHIPTGI+V +E+SQ++N Sbjct: 221 PEIEDDVEVNLKKEDLKIDTYRASGAGGQHVNTTDSAVRITHIPTGIVVICQNERSQNKN 280 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLT 324 AMKVLRA+L+++E K NE + + +Q + +IR+Y F + DHR N Sbjct: 281 LNSAMKVLRAKLFEIELKNRENEINDLKGVQ-SKIEWGSQIRSYVFQPYKMVKDHRTNHE 339 Query: 325 LYKLEYVLQGYIDDIINPLLT 345 ++ V+ G I+ I+ L Sbjct: 340 ENNVDKVMDGDINIFIDEYLK 360 >gi|22298070|ref|NP_681317.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1] gi|22294248|dbj|BAC08079.1| peptide chain release factor 2 [Thermosynechococcus elongatus BP-1] Length = 290 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 82/258 (31%), Positives = 132/258 (51%), Gaps = 4/258 (1%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 N L D + I+ I AG GG++A + L RMY R+A ++ + S+ Sbjct: 32 NRWELEQLLSGPYDKNNAIVTINAGAGGTDAQDWAEMLLRMYTRWAERHGYQTHLAELSE 91 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 ++ G K I GR + ++ E G HR+ R+ A+G+ TS A V V+PE + Sbjct: 92 GEEAGIKSATLEIRGRYAYGYLRSEKGTHRLVRISPFNANGKRQTSFAGVDVMPELDQSV 151 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 V+IP D+ I T R+ G GGQ+VN ++AVRI H PTG+ V + E+SQ QN+ +A+ + Sbjct: 152 TVEIPESDLEITTSRSGGKGGQNVNKVETAVRIVHKPTGLAVRCTQERSQLQNKEKALAI 211 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 L+A+L + +++ A E + R + +IR Y F + + D R + ++ V Sbjct: 212 LKAKLLVIAQEQKAKEIADIRGEAVE-AAWGNQIRNYVFHPYQLVKDLRTEVETTAIQDV 270 Query: 332 LQGYIDDIINPLLTAHQA 349 + G +D I L A Sbjct: 271 MDGNLDPFIQAYLRQQTA 288 >gi|81299215|ref|YP_399423.1| peptide chain release factor 2 [Synechococcus elongatus PCC 7942] gi|81168096|gb|ABB56436.1| bacterial peptide chain release factor 2 (bRF-2) [Synechococcus elongatus PCC 7942] Length = 304 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 85/306 (27%), Positives = 146/306 (47%), Gaps = 9/306 (2%) Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + Q + + ++ + + + + L D + Sbjct: 2 DWQQLDADITAILELLAIEPDPALFEEAETNVQRLQRELDQW-----ELQQLLSGPYDAE 56 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 IL I AG GG++A + L RMY R+A + +KV + S+ ++ G K + I G+ Sbjct: 57 GAILSINAGAGGTDAQDWAEMLLRMYTRWAEDQGYKVRITELSEGEEAGIKSVTLEIEGK 116 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRA 229 + +K E G HR+ R+ A+ + TS A V V+P +ID++IP +D+ I T RA Sbjct: 117 YAYGYLKAEKGTHRLVRISPFNANDKRQTSFAGVEVMPVLDTDIDLEIPEKDLEITTSRA 176 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 G GGQ+VN ++AVRI H+PTG+ V + E+SQ QN+ +A+ +L+A+L V +++ A E Sbjct: 177 GGKGGQNVNKVETAVRIVHLPTGLAVRCTEERSQLQNKEKALVILKAKLLVVLQEQKAKE 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + R + +IR Y F + + D R + + V+ G ++ I L Sbjct: 237 VAEIRGDMVE-AAWGNQIRNYVFHPYQLVKDLRTGVETKAIADVMNGDLNPFIQAYLRQD 295 Query: 348 QAKMIG 353 +I Sbjct: 296 NQMLIE 301 >gi|298208407|ref|YP_003716586.1| putative peptide chain release factor [Croceibacter atlanticus HTCC2559] gi|83848330|gb|EAP86199.1| putative peptide chain release factor [Croceibacter atlanticus HTCC2559] Length = 316 Score = 184 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 88/316 (27%), Positives = 157/316 (49%), Gaps = 8/316 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 ++ + + Y+Q +DL + + + + I +LE Sbjct: 1 MKELNVKKTWVEDYEQAITFVEDLEVIFEFYKEGEAEETNVKERYAKAKDLIEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + DD S +L+I AG GG+E+ + L RMY +A R +K++ L+ + D Sbjct: 57 FKNMLSEEGDDLSAVLQITAGAGGTESCDWAEMLMRMYLMWAEKRGFKIKELNLQNGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI Sbjct: 117 GIKTVSLEIEGNFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDSIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 DI D R+SG+GGQ+VN ++ +TH P+GI++ S +SQ +NR +AM++L+++ Sbjct: 177 NPADISWDFARSSGAGGQNVNKVETKAILTHHPSGIVIHNSETRSQLENREKAMQMLKSQ 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 LY++E ++ +R ++ + +IR Y + + D R ++ V+ G Sbjct: 237 LYEIELRKQQAQRDEIESSKMK-IEWGSQIRNYVMHPYKLVKDVRTAHETGNVDAVMNGD 295 Query: 336 IDDIINPLLTAHQAKM 351 ID + L A K Sbjct: 296 IDAFLKAFLMASGQKQ 311 >gi|303310501|ref|XP_003065262.1| Peptidyl-tRNA hydrolase domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240104924|gb|EER23117.1| Peptidyl-tRNA hydrolase domain containing protein [Coccidioides posadasii C735 delta SOWgp] gi|320034924|gb|EFW16867.1| peptide chain release factor 1 [Coccidioides posadasii str. Silveira] Length = 438 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 116/370 (31%), Positives = 188/370 (50%), Gaps = 44/370 (11%) Query: 21 LRMSESPSVDAYIKLTEEYA-------------------AISPIISKISIYDQKKQEEQD 61 R+ ++ L EYA ++ + + +D+ + + Sbjct: 37 ERLLSPALLNHARNLAREYATLSERLAGSFEKETAKRVGELTATVQALKEWDKAHESIAE 96 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L+ ++ D +SD E+R+LA ++ + L ++ L+P+ + C++EIR G G Sbjct: 97 LNHLLDDPSSDPELRELASDDLQTTVSSLFALSGKLKESLIPRHPFAELPCLVEIRPGAG 156 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG-------YKEIVATISGRGVFS 174 G EA LF +L RMY + + + +L D G E V I G ++ Sbjct: 157 GDEAGLFASELLRMYLAFCSRHGLRTAILKKDVEDGAGGSGSEDRLSEAVMEIEAPGSYN 216 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA------------AEIDVDIPLEDI 222 ++ E+GVHRVQR+PATEA GRVHTSA +V +LP D I +D+ Sbjct: 217 ILRTEAGVHRVQRIPATEAKGRVHTSAVSVMILPSFSEQNDSALNFDDPNSDYYINPQDV 276 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVE 281 + + MRASG+GGQHVN T+SA+R+TH+PT +V +SQH+NR +A ++LR+++ + Sbjct: 277 QSEKMRASGAGGQHVNKTESAIRLTHVPTSTVVAVQDSRSQHENRRKAWRLLRSKIAQMR 336 Query: 282 RKRMANERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YI 336 R+ E R+ +G R +++RTYNF Q R TDHR +T++ L VL G + Sbjct: 337 REAREQELVELRRGIMGGVARMGRGDKVRTYNFGQNRCTDHRSGVTIHNLGSVLDGGEGL 396 Query: 337 DDIINPLLTA 346 D+I+ + Sbjct: 397 DNIMESVSNW 406 >gi|154483104|ref|ZP_02025552.1| hypothetical protein EUBVEN_00805 [Eubacterium ventriosum ATCC 27560] gi|149735912|gb|EDM51798.1| hypothetical protein EUBVEN_00805 [Eubacterium ventriosum ATCC 27560] Length = 286 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 107/289 (37%), Positives = 161/289 (55%), Gaps = 8/289 (2%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G+ +D+ I + + E E + L D + I++I AG GG+E+ Sbjct: 1 MGEEENDASIVEEVEQETKEFIDEFE----KTKIETLLSGEYDKNNAIVKINAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L+RMY R+A + +K EVL D D+ G K I ++G + +K E GVHR+ Sbjct: 57 CDWASMLYRMYTRWAESKGYKTEVLDFLDGDEAGIKSITFQVNGENAYGYLKSEKGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V+P+ E DV+I +DIRIDT R+SG+GGQH+N T SAV Sbjct: 117 VRISPFNAAGKRQTSFASCDVMPDIEEDLDVEINDDDIRIDTYRSSGAGGQHINKTSSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH PTGI+V +E+SQ QN+ +AMK+L+A+LY ++++ +RS R +I Sbjct: 177 RITHNPTGIVVQCQNERSQLQNKDKAMKMLKAKLYVLKKQEEEEKRSGIR-GEIKEIGWG 235 Query: 304 ERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +IR+Y + DHR N + + V+ GYID IN L K Sbjct: 236 SQIRSYVMQPYTMVKDHRTNQEITDVGKVMDGYIDPFINAYLKWINIKK 284 >gi|78188007|ref|YP_378345.1| peptide chain release factor 2 [Chlorobium chlorochromatii CaD3] gi|78170206|gb|ABB27302.1| bacterial peptide chain release factor 2 (bRF-2) [Chlorobium chlorochromatii CaD3] Length = 312 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 102/314 (32%), Positives = 159/314 (50%), Gaps = 12/314 (3%) Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 +E A + + K + QD + + +S +L E+ + Sbjct: 3 KELADLKSWTDEYDKLSAKARYCQDEMDIALELQDESFGDELTNT-----ITELEQAIAA 57 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 I + + DD + ++ I AG GG+EA + L+RMY R+A + +K + D Sbjct: 58 IEFRNMLSGKDDAGNAMVTIHAGAGGTEAQDWAEMLYRMYMRWAERKGFKTFTDDYQEGD 117 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DV 215 G K I G + +K E+GVHR+ RV +A+ R HTS A+V PEA ++ Sbjct: 118 GAGIKTATLEIQGAYAYGYLKAENGVHRLVRVSPFDANARRHTSFASVYTYPEAPPDVEI 177 Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 ++ ED+ + T R+ G GGQ+VN ++AVRI H+PTGI+V E+SQ QNR RAMK+L Sbjct: 178 EVRKEDLELSTFRSGGKGGQNVNKVETAVRIKHLPTGIVVGCQEERSQLQNRERAMKMLM 237 Query: 275 ARLYDVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 A+LY +R+ ++ +K +I G +IR+Y RI DHR N + +E VL Sbjct: 238 AQLYQRQREEEDAKKREIEGKKKKIEWG---SQIRSYVLDDRRIKDHRTNYERFDIETVL 294 Query: 333 QGYIDDIINPLLTA 346 G +DD + L+ Sbjct: 295 DGDLDDFMEKYLSQ 308 >gi|282900531|ref|ZP_06308475.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii CS-505] gi|281194584|gb|EFA69537.1| Peptide chain release factor 2 [Cylindrospermopsis raciborskii CS-505] Length = 291 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 86/289 (29%), Positives = 139/289 (48%), Gaps = 9/289 (3%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + +++ + L D + +L I AG GG+ Sbjct: 3 ELLELEADEGLLQEAETTINQMHRDLDQW-----ELQQLLSGPYDSQGAVLTINAGAGGT 57 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+A +KV + S+ D+ G K I+GR + ++ E G H Sbjct: 58 DAQDWAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEMGTH 117 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ A+G+ TS A V V+P+ +IP +D+ I T RA G GGQ+VN ++ Sbjct: 118 RLVRISPFNANGKRQTSFAGVEVMPQIDNSVTLEIPEKDLEITTSRAGGKGGQNVNKVET 177 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRI HIPTG+ V + E+SQ QN+ +A+ L+A+L + R++ A E + R + Sbjct: 178 AVRIVHIPTGVAVRCTEERSQLQNKEKALARLKAKLLVIAREQRAQEIAEIRGDMVE-AS 236 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R NL + V+ G +D+ I L Sbjct: 237 WGNQIRNYVFHPYQIVKDLRTNLETTAIGDVMNGDLDNFIQAYLRQENQ 285 >gi|86132182|ref|ZP_01050777.1| peptide chain release factor 2 [Dokdonia donghaensis MED134] gi|85817101|gb|EAQ38284.1| peptide chain release factor 2 [Dokdonia donghaensis MED134] Length = 316 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 93/317 (29%), Positives = 158/317 (49%), Gaps = 12/317 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + ++ Y++ + +DL + + Q I ++E Sbjct: 1 MKTLRSKKKWVTDYEEAQTFVEDLEVLYEFAKEGEAPEENVQARYEKAASFIEDIE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D+ SC+L+I AG GG+E+ + L RMY YA + WKV+ L+ + D Sbjct: 57 FRNMLSEEGDELSCVLQITAGAGGTESCDWASMLMRMYLMYAEKQGWKVKELNFQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++++ Sbjct: 117 GIKTVSLEIEGEFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIEL 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 D I T R+SG+GGQ+VN ++ V++TH PTGI + S +SQH NR +A+++LR++ Sbjct: 177 NPADYDIVTARSSGAGGQNVNKVETKVQLTHHPTGIQISCSDSRSQHDNRAKALQMLRSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E ++ R+A K I G +IR Y + + D R + + VL Sbjct: 237 LYELELRKQMEARNAIEADKKAIEWG---SQIRNYVLHPYKLVKDVRTAVETGNTDAVLD 293 Query: 334 GYIDDIINPLLTAHQAK 350 G ID + L + Sbjct: 294 GNIDLFLKGYLMMMGQE 310 >gi|315223860|ref|ZP_07865708.1| peptide chain release factor RF2 [Capnocytophaga ochracea F0287] gi|314946190|gb|EFS98191.1| peptide chain release factor RF2 [Capnocytophaga ochracea F0287] Length = 315 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + Y++ + D+ ++ + + I LE Sbjct: 1 MRELRTKKKWVEDYEEAENLTSDIEVLLDFFKEGEATAEDVDHQYTQALHAIEALE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D D S +L+I AG GG+E+ + L RMY + +K+KV+ L+ + D Sbjct: 57 FRNMLSDEGDTMSAVLQITAGAGGTESCDWASMLLRMYTMWCNNQKYKVKTLNFQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI Sbjct: 117 GIKTVTIEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDTIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 DI +TMR+SG+GGQ+VN ++AVR+ H PTGI++ S +SQ N+ +A+++L+++ Sbjct: 177 NPADITFETMRSSGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E K+ +R K++I G +IR Y + + D R N ++ V+ Sbjct: 237 LYEIELKKRQAKRDEIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRTNYESTDVDSVMN 293 Query: 334 GYIDDIINPLLT 345 G +D+ + L Sbjct: 294 GELDEFLKAYLM 305 >gi|212697040|ref|ZP_03305168.1| hypothetical protein ANHYDRO_01605 [Anaerococcus hydrogenalis DSM 7454] gi|212675815|gb|EEB35422.1| hypothetical protein ANHYDRO_01605 [Anaerococcus hydrogenalis DSM 7454] Length = 238 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 93/237 (39%), Positives = 137/237 (57%), Gaps = 8/237 (3%) Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 + I AG GG EA + L RMY R+ R +K ++ ++ + GG K I G + Sbjct: 1 MVIHAGAGGLEATDWAEMLMRMYTRFFERRNFKFDITDLNNEEAGGIKSATIHIKGSFAY 60 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGS 232 +K E GVHR+ R+ ++S R HTS A++ + PE ++ V+I +D+RIDT RASG+ Sbjct: 61 GYLKGERGVHRLVRISPFDSSKRRHTSFASIDIFPELNDDMSVEIDPKDLRIDTYRASGA 120 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN TDSAVRITHIPTG++ + +E+SQ QN+ AMK+L A+L ++ + + Sbjct: 121 GGQHVNKTDSAVRITHIPTGVIASSQAERSQTQNKETAMKLLLAKLTQIKEEEHREKIED 180 Query: 292 NRKL--QIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + QI G +IR+Y F + DHR N + +E V+ G ID I+ L Sbjct: 181 IQGNYTQIAWG---SQIRSYVFHPYTLVKDHRTNFEVGNVESVMDGDIDGFIDAYLA 234 >gi|237743972|ref|ZP_04574453.1| peptide chain release factor 2 [Fusobacterium sp. 7_1] gi|256027415|ref|ZP_05441249.1| peptide chain release factor 2 [Fusobacterium sp. D11] gi|289765378|ref|ZP_06524756.1| peptide chain release factor 2 [Fusobacterium sp. D11] gi|229433003|gb|EEO43215.1| peptide chain release factor 2 [Fusobacterium sp. 7_1] gi|289716933|gb|EFD80945.1| peptide chain release factor 2 [Fusobacterium sp. D11] Length = 308 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 163/306 (53%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E +D +I S + E I K E LL Sbjct: 5 KNIVSRYEKLATEIEDEEVLIDFVESGETSFESELSEKHKILKNDV---EEFEINLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKNYKVTELDFMEGDSVGVKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E GVHR+ R+ +A+ + HTS A+V V+PE E +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEIDPADIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH P+GI+V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELEIK 241 Query: 284 RMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G IDD I Sbjct: 242 KKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|88797976|ref|ZP_01113563.1| peptide chain release factor 2 [Reinekea sp. MED297] gi|88779173|gb|EAR10361.1| peptide chain release factor 2 [Reinekea sp. MED297] Length = 280 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 98/285 (34%), Positives = 154/285 (54%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D E+ +++++ ELE + + D + L+I+AG+GG+EA Sbjct: 1 MAVEEDDEGSVADVSEELAGLQRQLEELE----FRRMFSGEMDPSNAYLDIQAGSGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ + +K E++ +S D G K G F ++ E+GVHR+ Sbjct: 57 QDWAEMLLRMYLRWGEEKGFKTELMEASAGDVAGIKSATVRFEGEYAFGWLRTETGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS ++V V PE + +++I D+RID RASG+GGQHVN T+SAV Sbjct: 117 VRKSPFDSGNRRHTSFSSVFVSPEIDDNVEIEINPADLRIDVYRASGAGGQHVNRTESAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE--RKRMANERSANRKLQIGSGD 301 RITH PTGI+ +++SQH+N+ +AMK L+A+LY+ E +++ A + + K IG G Sbjct: 177 RITHEPTGIVTQCQNDRSQHKNKDQAMKQLKAKLYEREMLQRQEAAQLVEDNKSDIGWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R + + VL G +D I L Sbjct: 236 --SQIRSYVLDDARIKDLRTGVENRNTQAVLDGALDPFIEASLKQ 278 >gi|332295608|ref|YP_004437531.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM 14796] gi|332178711|gb|AEE14400.1| peptide chain release factor 2 [Thermodesulfobium narugense DSM 14796] Length = 363 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 101/347 (29%), Positives = 158/347 (45%), Gaps = 11/347 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + + EI +S K + + I ++ +D + Sbjct: 21 DLDNKIKKLEEIRNDLSNPEIWQDVQKSSNLTQLADNLQKSIDEWNNLNSSFEDF--LFW 78 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D + + K + ELE L D +L I AG GG +A Sbjct: 79 TEFQDEGAENEIAESYKNLVKILEELEV----KALLSGKYDSYDAMLSISAGAGGVDAQD 134 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 F L RMY R+ K+ VE++ S D+ G + G+ + +K E GVHR+ R Sbjct: 135 FAEMLLRMYIRWGEKNKYSVELVDQSPGDEAGIRSATIFFKGKYSYGFLKSEQGVHRLIR 194 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + + R HTS V V P ++++ E+I+I+T RASG+GGQHVN TDSAVRI Sbjct: 195 LSPFDFNNRRHTSFVLVEVTPLIENVKEINVKNEEIKIETFRASGAGGQHVNKTDSAVRI 254 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTGI+V +E+SQ QN+ AMK+L +RL + ++ ++ S + ++ Sbjct: 255 THLPTGIVVTCRNERSQFQNKEAAMKILISRLNSLYEEKQKDKMSEFKGE--TDASWGKQ 312 Query: 306 IRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 IRTY + DHR N+ + + VL G ID+ L + Sbjct: 313 IRTYVMHPYTMVKDHRTNVEIGDVYGVLDGNIDEFQKAFLLKESKEK 359 >gi|320449740|ref|YP_004201836.1| peptide chain release factor 2, programmed [Thermus scotoductus SA-01] gi|320149909|gb|ADW21287.1| peptide chain release factor 2, programmed [Thermus scotoductus SA-01] Length = 307 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 101/310 (32%), Positives = 159/310 (51%), Gaps = 10/310 (3%) Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 + + + + L + + + + + + ++LE+ + L + Sbjct: 2 DTFRSLESDLEGLLELWQE-----FPAEEREALRPELLEAAKKLESLY-HETLLSFPHAE 55 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 K+ IL I+ G GG+EA + L RMY R+A + ++VEV+ + + G + G Sbjct: 56 KNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFQVEVVDVTPGAEAGIDYAQIIVRG 115 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMR 228 + + E+GVHR+ R +ASGR HTS A V V+PE + +V I ED+RID R Sbjct: 116 ENAYGLLAPEAGVHRLVRPSPFDASGRRHTSFAGVEVMPEVDDTVEVVIRPEDLRIDVFR 175 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 + G GGQ VNTTDSAVRI H+PTGI V + +SQ +N+ AMKVLR+RLY++E K+ Sbjct: 176 SQGHGGQGVNTTDSAVRIVHLPTGITVTCQTTRSQIKNKELAMKVLRSRLYELEWKKKQE 235 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 E R ++ + +IR+Y + + DHR L + + VL G + D I L Sbjct: 236 ELRKLR-GEVRPIEWGSQIRSYVLDKQYVKDHRTGLMRFDPQNVLDGDLLDFIWAGLEW- 293 Query: 348 QAKMIGSASE 357 +A + E Sbjct: 294 KAGRRQAVEE 303 >gi|289675203|ref|ZP_06496093.1| peptide chain release factor 2 [Pseudomonas syringae pv. syringae FF5] gi|302185552|ref|ZP_07262225.1| peptide chain release factor 2 [Pseudomonas syringae pv. syringae 642] gi|330896019|gb|EGH28242.1| peptide chain release factor 2 [Pseudomonas syringae pv. japonica str. M301072PT] gi|330936871|gb|EGH41012.1| peptide chain release factor 2 [Pseudomonas syringae pv. pisi str. 1704B] gi|330968992|gb|EGH69058.1| peptide chain release factor 2 [Pseudomonas syringae pv. aceris str. M302273PT] gi|330975436|gb|EGH75502.1| peptide chain release factor 2 [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 248 Score = 183 bits (465), Expect = 3e-44, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S + G K Sbjct: 1 MFSGDMDPNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 61 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPA 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ Sbjct: 121 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYE 180 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ + + K IG G +IR+Y RI D R N+ + VL G ID Sbjct: 181 QEVQKRNAASQALEDTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDID 237 Query: 338 DIINPLLTA 346 + + L Sbjct: 238 EYLIASLKQ 246 >gi|332827204|gb|EGJ99978.1| hypothetical protein HMPREF9455_03672 [Dysgonomonas gadei ATCC BAA-286] Length = 318 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 152/324 (46%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 I + I Y++ K ++L + K + LE Sbjct: 1 MKIIRGLKGWIEGYEEVKGAAEELQLAFDFQKEGVTSEEEVDAAYENAVKLVENLEL--- 57 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D +L++ +G GG+E + LFRMY+R+ R +K + D D+ Sbjct: 58 -KNMLRREEDKLGAVLKVNSGAGGTEGQDWASMLFRMYQRWCDARGYKTTITHWQDGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + G + +K E+GVHR+ RV A G+ TS A+V V+P I++++ Sbjct: 117 GIKTATLQVEGEYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVYVVPLVDDTIEIEV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 DI DT R+SG+GGQ+VN ++ VR+ + ++ + +SQ N+ Sbjct: 177 NQSDITWDTFRSSGAGGQNVNKVETGVRLHYKYKDPETGEEKEIVIENTESRSQFGNKDN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 A+++L+++LY++E +R + E+S K +I G +IR+Y F R+ DHR N Sbjct: 237 AIRLLKSQLYEMELERRSREQSKIEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G +DD I L + + Sbjct: 294 NVNAVMDGDLDDFIKAYLMEYGEE 317 >gi|326470521|gb|EGD94530.1| peptide chain release factor 1 [Trichophyton tonsurans CBS 112818] Length = 438 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 115/371 (30%), Positives = 194/371 (52%), Gaps = 30/371 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + I+P+ + + +D + +L +I + + Sbjct: 53 ALAAEHATLTAKQAESFE----RAAAKRIGEIAPVANALKDWDTAHESITELQGLIDEPS 108 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + + L+P+ D C++EIR G GG EA LF Sbjct: 109 TDTELKSLAEDDITTTIGTLSSLSDTLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 168 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 ++ RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 169 EMLRMYTSFCSSRGLRTTIIKMEAEDGVGAGAEERLSEVVMEVETPGSYNILRTEAGVHR 228 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 229 VQRVPATEAKGRTHTSAVSVMILPSFPENNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 288 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 289 GAGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 348 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLL 344 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ II + Sbjct: 349 MELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIIESVQ 408 Query: 345 TAHQAKMIGSA 355 + + + Sbjct: 409 NWLVDQEVEAL 419 >gi|114569849|ref|YP_756529.1| peptide chain release factor 2 [Maricaulis maris MCS10] gi|114340311|gb|ABI65591.1| bacterial peptide chain release factor 2 (bRF-2) [Maricaulis maris MCS10] Length = 321 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 95/321 (29%), Positives = 157/321 (48%), Gaps = 17/321 (5%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 E + I+ + +Q+ + ++ + + + + E+ Sbjct: 1 MRERNRLEAAITTVVEAEQEYSDSLEIIELAEMEDDAEMVEEAVAGLNALAERM-----R 55 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D +EI +G GG+E+ + L RMY R+A +KVE + Sbjct: 56 RAQLETLLSGEADGNDAFVEIHSGAGGTESQDWAAMLARMYSRWANAHGYKVETMEEQAG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEID 214 ++ G K + G + +K E+GVHR+ R+ ++S R HTS ++V V P+ ID Sbjct: 116 EEAGLKSTTILVKGENAYGWLKTEAGVHRLVRISPFDSSARRHTSFSSVGVYPQIDDAID 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH-----IPTGIMVTSSEKSQHQNRLRA 269 VDI + +R DT RASG+GGQH+N TDSAVR+T+ ++ +++SQH+NR +A Sbjct: 176 VDIDVSKVRTDTYRASGAGGQHINKTDSAVRLTYDMPGEEKPVVVQCQNDRSQHKNRSQA 235 Query: 270 MKVLRARLYDVE--RKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLY 326 +LRAR+Y++E R+ A + A+ K +IG G +IR+Y + + D R N+ Sbjct: 236 WDMLRARVYEIELQRREAAAQAEADSKSEIGWG---HQIRSYVLQPYQMVKDLRTNVETS 292 Query: 327 KLEYVLQGYIDDIINPLLTAH 347 VL G +DD + L A Sbjct: 293 NTGGVLDGDLDDFMAAALAAR 313 >gi|83773134|dbj|BAE63261.1| unnamed protein product [Aspergillus oryzae] Length = 388 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 109/346 (31%), Positives = 187/346 (54%), Gaps = 24/346 (6%) Query: 34 KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 ++ + ++PI + + +D+ + +L+ ++ D ++D E++ LA ++ ++ + + Sbjct: 29 RIAKRVGELAPIANVLDEWDRANESISELNALLFDPDTDLELKSLAIEDLETVKAALPTI 88 Query: 94 ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153 + L+P+ C+LEIR G GG EA LF +L RMY + + R ++ V+ Sbjct: 89 SENLKKALVPRHPFAALPCLLEIRPGAGGDEAGLFAFELLRMYTAFCSRRGFRSNVIKLE 148 Query: 154 DND---DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA 210 D + E V + G + ++ ESGVHRVQRVPATE GR HTSA +V VLP Sbjct: 149 VGDGPAEDRLNEAVMEVEADGAYEILRTESGVHRVQRVPATETKGRTHTSAVSVMVLPSF 208 Query: 211 A---------------EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 D + +++R + MRA G+GGQHVN T+SA+R+TH+PTGI+V Sbjct: 209 PETGGAMDNALNFDDPNSDYYVDPQEVRSEKMRAGGAGGQHVNKTESAIRLTHMPTGIVV 268 Query: 256 T-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL---QIGSGDRSERIRTYNF 311 + +SQH NR +A ++LRARL + ++ + R+ + R ++IRTYN+ Sbjct: 269 SMQDSRSQHANRKKAWQILRARLAEARQEAREQKFVELRRGVLGGVARMGRGDKIRTYNY 328 Query: 312 SQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSA 355 Q R TDHR ++T++ L VL G ++ ++ + + + + + Sbjct: 329 GQSRCTDHRSSITIHNLNDVLDGGEGLETVMESVRSWLIDQEVAAL 374 >gi|120602348|ref|YP_966748.1| peptide chain release factor 2 [Desulfovibrio vulgaris DP4] gi|120562577|gb|ABM28321.1| bacterial peptide chain release factor 2 (bRF-2) [Desulfovibrio vulgaris DP4] Length = 310 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 109/308 (35%), Positives = 166/308 (53%), Gaps = 13/308 (4%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + I+++ + + + + + + S + L + +L E L Sbjct: 2 LEGEINRLEALETCRNDVSEWLLLAEEDESAEALESLE-----EQIIRLEQLIEETEMNL 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 L +D + +LEI G GG+EA + L RMY R+A +K E L D D+ G K Sbjct: 57 LLSGKEDRFAALLEIHPGAGGTEAQDWAEMLLRMYLRWADTHGYKTEYLDYLDGDEAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLE 220 + I+G + +K E G+HR+ R+ +ASGR HTS A+V V+P+ +I ++I Sbjct: 117 SVTLRIAGPNAYGLLKGERGIHRLIRISPFDASGRRHTSFASVDVIPDVGQDIKIEIKDT 176 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID R+SG GGQ VNTT SAVR+THIPTGI+ +EKSQH N+ A+++LR RLY+ Sbjct: 177 DLRIDVFRSSGPGGQSVNTTSSAVRVTHIPTGIVAQCQNEKSQHHNKDSALQILRGRLYE 236 Query: 280 VERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYI 336 +E +++ E+ A K IG G +IRTY R + DHR N + +E VL G + Sbjct: 237 LELRKLEEEKKAQYGAKDAIGFG---SQIRTYTLQPYRLVKDHRTNTEVGDVEAVLDGRL 293 Query: 337 DDIINPLL 344 D ++ L Sbjct: 294 DKLLRDYL 301 >gi|83814103|ref|YP_445897.1| peptide chain release factor 2 [Salinibacter ruber DSM 13855] gi|83755497|gb|ABC43610.1| peptide chain release factor 2 [Salinibacter ruber DSM 13855] Length = 378 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 99/377 (26%), Positives = 166/377 (44%), Gaps = 30/377 (7%) Query: 1 MVFLSHKQICDLKNRFA----------------EIELRMSESPSVDAYIKLTEEYAAISP 44 M S + + L R E+ + D + E I+ Sbjct: 1 MKSYSDEDLEQLAERVEALGGYLDVDGRRMTVEELNQERMDPDFWDDPDRAREIEKRIAR 60 Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 I ++ K++ +D+ T+ + E A +++ + + + L Sbjct: 61 EEEWIEAWEDVKEQAEDIETLQLLSEEEGEDMSDEID---AEARKLEQKLDRLELESLLD 117 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 D DD++ I+EI G GG+E+ + L RMY R+A + + VE++ ++ G K Sbjct: 118 DPDDERDAIVEINPGAGGTESQDWAEMLLRMYMRWAEDQDYDVELVHQQPGEEAGIKSAT 177 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIR 223 + GR + R+K E+GVHR+ R+ +A R HTS A+V V PE + VD+ +I Sbjct: 178 LNVQGRHAYGRLKSETGVHRLVRISPFDADSRRHTSFASVFVYPEVDDSIGVDLSEGEIE 237 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGI--------MVTSSEKSQHQNRLRAMKVLRA 275 + T R+ G GGQHVN ++ VR+ T + E+SQHQNR RA ++L++ Sbjct: 238 LQTFRSGGKGGQHVNKVETGVRLIWTGTLSNGEETTVRAACTQERSQHQNRRRAREMLKS 297 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQG 334 R+Y ER+ E+ + S + +IR+Y + DHR + E VL+G Sbjct: 298 RIYQAERELKEEEKERLESSK-KSIEWGSQIRSYVLHPYKMVNDHRTDTKRNDAEAVLEG 356 Query: 335 YIDDIINPLLTAHQAKM 351 +D I L + Sbjct: 357 ELDPFIKAYLLKGKKDR 373 >gi|77457286|ref|YP_346791.1| peptide chain release factor 2 [Pseudomonas fluorescens Pf0-1] gi|77381289|gb|ABA72802.1| putative Peptide chain release factor 2 (RF-2) protein [Pseudomonas fluorescens Pf0-1] Length = 280 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 100/277 (36%), Positives = 153/277 (55%), Gaps = 7/277 (2%) Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 E + A +V+ + + + E +++ + + D + L+I+AG+GG+EA + L Sbjct: 4 EENDEGAVNDVVEVLQGLEESLSKLEFRRMFSHEMDPNNAYLDIQAGSGGTEAQDWANIL 63 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY R+A R + ++ S + G K I G F ++ E GVHR+ R + Sbjct: 64 LRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRLVRKSPFD 123 Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVRITH+PT Sbjct: 124 SGNRRHTSFSAVFVSPEIDDKVEIEINPADLRIDTYRSSGAGGQHVNTTDSAVRITHVPT 183 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRT 308 +V +E+SQH N+ AMK+LRA+LY+ E ++ + + K IG G +IR+ Sbjct: 184 NTVVSCQNERSQHANKDTAMKMLRAKLYEQEMQKRNAASQALEDTKSDIGWG---HQIRS 240 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Y RI D R N+ + VL G ID+ + L Sbjct: 241 YVLDASRIKDLRTNIERSDCDKVLDGDIDEYLEASLK 277 >gi|332707784|ref|ZP_08427811.1| bacterial peptide chain release factor 2 [Lyngbya majuscula 3L] gi|332353487|gb|EGJ33000.1| bacterial peptide chain release factor 2 [Lyngbya majuscula 3L] Length = 294 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 88/296 (29%), Positives = 143/296 (48%), Gaps = 9/296 (3%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 ++ + + ++ D+ + + ++ R L T D K +L I Sbjct: 2 EDTKAILELLELETDDALLAEAQTNLTQLNKELDRW-----ELEQLLSGTYDAKGAVLTI 56 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 AG GG++A + L RMY R+A +KV + S D+ G K I G + + Sbjct: 57 NAGAGGTDAQDWADLLLRMYTRWAENHGYKVHLAELSPGDEAGIKSATLEIDGLRAYGYL 116 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQ 235 K E G HR+ R+ A+G+ TS A V V+P +++IP +D+ I T RA G GGQ Sbjct: 117 KAEKGTHRLVRISPFNANGKRQTSFAGVEVMPAVDNTVELEIPEKDLEITTSRAGGKGGQ 176 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 +VN ++AVRI HIPTG+ V + E+SQ QN+ +A+ +L+A+L + ++ A E + R Sbjct: 177 NVNKVETAVRIVHIPTGLAVRCTQERSQLQNKEKALVLLKAKLLVIAEEQRAQEIAEIRG 236 Query: 295 LQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + +IR Y F + + D R ++ + VL G +D I L Sbjct: 237 DMVE-AAWGNQIRNYVFHPYQMVKDLRTSVETTAVNDVLDGNLDLFIEAYLRQENQ 291 >gi|119195451|ref|XP_001248329.1| peptide chain release factor 1, mitochondrial precursor (MRF-1) [Coccidioides immitis RS] Length = 438 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 115/370 (31%), Positives = 188/370 (50%), Gaps = 44/370 (11%) Query: 21 LRMSESPSVDAYIKLTEEYA-------------------AISPIISKISIYDQKKQEEQD 61 R+ ++ L E+A ++ + + +D+ + + Sbjct: 37 ERLLSPALLNHARNLAREHATLSERLAGSFEKETAKRVGELTATVQALKEWDKAHESIAE 96 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L+ ++ D +SD E+R+LA ++ + L ++ L+P+ + C++EIR G G Sbjct: 97 LNHLLDDPSSDPELRELASDDLQTTVSSLFALSGKLKESLIPRHPFAELPCLVEIRPGAG 156 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG-------YKEIVATISGRGVFS 174 G EA LF +L RMY + + + +L D G E V I G ++ Sbjct: 157 GDEAGLFASELLRMYLAFCSRHGLRTAILKKDVEDGAGGSGSEDRLSEAVMEIEAPGSYN 216 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA------------AEIDVDIPLEDI 222 ++ E+GVHRVQR+PATEA GRVHTSA +V +LP D I +D+ Sbjct: 217 ILRTEAGVHRVQRIPATEAKGRVHTSAVSVMILPSFSEQNDSALNFDDPNSDYYINPQDV 276 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVE 281 + + MRASG+GGQHVN T+SA+R+TH+PT +V +SQH+NR +A ++LR+++ + Sbjct: 277 QSEKMRASGAGGQHVNKTESAIRLTHVPTSTVVAVQDSRSQHENRRKAWRLLRSKIAQMR 336 Query: 282 RKRMANERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YI 336 R+ E R+ +G R +++RTYNF Q R TDHR +T++ L VL G + Sbjct: 337 REAREQELVELRRGIMGGVARMGRGDKVRTYNFGQNRCTDHRSGVTIHNLGSVLDGGEGL 396 Query: 337 DDIINPLLTA 346 D+I+ + Sbjct: 397 DNIMESVSNW 406 >gi|194761148|ref|XP_001962794.1| GF14253 [Drosophila ananassae] gi|190616491|gb|EDV32015.1| GF14253 [Drosophila ananassae] Length = 392 Score = 183 bits (464), Expect = 4e-44, Method: Composition-based stats. Identities = 117/324 (36%), Positives = 178/324 (54%), Gaps = 5/324 (1%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 A + +++ + ++ + + + + + + ++ + + Sbjct: 58 RLAQLEGVVTALEQRRVLERNITSAQDM-ELEKDEDMRSLMQEENAIYTDLLSKQEQTLL 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D + + I I AG GG EA LF +L+ MY Y + W E + D Sbjct: 117 RELLAMADDEVYPALIFGINAGAGGQEAMLFAQELYEMYTNYFEHKGWDYEEFAHETTDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 GG + +SG F+ ++ E+GVHRVQRVPATE SGR+HTS A++ V+P A++ V I Sbjct: 177 GGIRHASIMVSGEDAFTWLRHEAGVHRVQRVPATEKSGRMHTSTASITVIPRPADVQVHI 236 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR AM LR+R Sbjct: 237 ADKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNRELAMSRLRSR 296 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG- 334 L + + A +K Q GS +R+E+IRTYNF Q RITDHR+ T++ L+ L+G Sbjct: 297 LVQRQLESAEASTKATKKAQQGSLNRNEKIRTYNFVQDRITDHRLQGGTMHNLDGFLKGG 356 Query: 335 -YIDDIINPLLTAHQAKMIGSASE 357 + +I L H+ + + E Sbjct: 357 EQLTSLIEKLQLEHRKERLKDLLE 380 >gi|33519726|ref|NP_878558.1| peptide chain release factor 2 [Candidatus Blochmannia floridanus] gi|33504071|emb|CAD83332.1| peptide chain release factor 2 (RF-2) [Candidatus Blochmannia floridanus] Length = 365 Score = 183 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 107/307 (34%), Positives = 171/307 (55%), Gaps = 13/307 (4%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 I ++ + Q+ DL ++ ++S L E+ I + ++ + Sbjct: 60 ENIGELVNYMVKDLQDLSDLIKIVVHNDS------LLINEIQEQLIHIDRILFQLEMCQM 113 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 DD +C ++I++G+GG+EA + L RMY ++ + + VE+++ S D G K Sbjct: 114 FSKKYDDCNCYVDIQSGSGGTEAQDWANMLLRMYLKWIDNKGFNVEIVTESCGDFSGIKS 173 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLED 221 + G V+ ++ ESG+HR+ R +A+G+ HTS A+V V PE ID+ I ED Sbjct: 174 TTIKVIGPYVYGWLRTESGIHRLVRKSPFDATGKRHTSFASVFVYPELDDNIDIQIRPED 233 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +RID RASG+GGQHVN T+SAVRITHIPT I+ S++SQH+N+ +A+K L+A+LY+ Sbjct: 234 LRIDVYRASGAGGQHVNRTESAVRITHIPTNIVTQCQSDRSQHKNKNQAIKQLKAKLYNF 293 Query: 281 E--RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 E +KR+ + N+K I G+ +IR+Y RI D R L + ++ VL G +DD Sbjct: 294 ELHKKRIEKKIRENKKKDITWGN---QIRSYVLDHSRIKDLRTGLEKHNVKAVLNGDLDD 350 Query: 339 IINPLLT 345 I + Sbjct: 351 FIKTSIK 357 >gi|237800110|ref|ZP_04588571.1| peptide chain release factor 2 [Pseudomonas syringae pv. oryzae str. 1_6] gi|257487126|ref|ZP_05641167.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. tabaci ATCC 11528] gi|320323152|gb|EFW79241.1| peptide chain release factor 2 [Pseudomonas syringae pv. glycinea str. B076] gi|320329576|gb|EFW85565.1| peptide chain release factor 2 [Pseudomonas syringae pv. glycinea str. race 4] gi|330867549|gb|EGH02258.1| peptide chain release factor 2 [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330872776|gb|EGH06925.1| peptide chain release factor 2 [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330878328|gb|EGH12477.1| peptide chain release factor 2 [Pseudomonas syringae pv. glycinea str. race 4] gi|330894559|gb|EGH27220.1| peptide chain release factor 2 [Pseudomonas syringae pv. mori str. 301020] gi|330959166|gb|EGH59426.1| peptide chain release factor 2 [Pseudomonas syringae pv. maculicola str. ES4326] gi|330964102|gb|EGH64362.1| peptide chain release factor 2 [Pseudomonas syringae pv. actinidiae str. M302091] gi|330985076|gb|EGH83179.1| peptide chain release factor 2, programmed frameshift [Pseudomonas syringae pv. lachrymans str. M301315] gi|331009249|gb|EGH89305.1| peptide chain release factor 2 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331022966|gb|EGI03023.1| peptide chain release factor 2 [Pseudomonas syringae pv. oryzae str. 1_6] Length = 248 Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 98/249 (39%), Positives = 139/249 (55%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S + G K Sbjct: 1 MFSGEMDPNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIMELSAGEVAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G F ++ E GVHR+ R ++ R HTS + V V PE + ++DI Sbjct: 61 GATVHIKGEYAFGWLRTEIGVHRLVRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDT R+SG+GGQHVNTTDSAVRITH+PT +V +E+SQH N+ AMK+LRARLY+ Sbjct: 121 DLRIDTYRSSGAGGQHVNTTDSAVRITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYE 180 Query: 280 VERKRMAN--ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 E ++ + + K IG G +IR+Y RI D R N+ + VL G ID Sbjct: 181 QEVQKRNAASQALEDTKSDIGWG---HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDID 237 Query: 338 DIINPLLTA 346 + + L Sbjct: 238 EYLIASLKQ 246 >gi|145485050|ref|XP_001428534.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124395620|emb|CAK61136.1| unnamed protein product [Paramecium tetraurelia] Length = 390 Score = 183 bits (463), Expect = 5e-44, Method: Composition-based stats. Identities = 119/360 (33%), Positives = 193/360 (53%), Gaps = 8/360 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++L ++++ +L + + + + ++ + + P I +D Sbjct: 27 LYLINQRLGELNTEYETYQDQTIK-GDMNEIKR--RRMNELQPKIHIYKQIQASVSVIED 83 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +IG S EI L + IE + ++ ++ L+ + D + +E+RAG G Sbjct: 84 AKQLIGMGGSSDEISMLNEEIQSQIEYLKKYQDDALSQLIEEDEYDHIRQLNVEVRAGVG 143 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD--GGYKEIVATISGRGVFSRMKFE 179 GSE +LF D+ M + YA+L+ W V+S ++ G K + I+G V+ +K E Sbjct: 144 GSEGSLFAEDIIGMIQNYASLQNWDCRVISIQKDNQIGKGCKTGILQINGENVYQHLKCE 203 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 SGVH+V RVP TEA GR+H+S A++ VLP+ + + +D+R + MRASG GGQHVN Sbjct: 204 SGVHKVIRVPETEAKGRLHSSTASMIVLPKVTD-SFHLSDKDLRYEYMRASGPGGQHVNK 262 Query: 240 TDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SA RITH+PTG +V ++SQ +N+ RA ++LR +L+ + + + RK Q+ Sbjct: 263 TESACRITHVPTGIQVVNMEDRSQERNKQRAYQILRDKLFAIHVQEKQERMAQTRKSQVT 322 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 DRS++IRTYNF Q RITDHR NLTLY +E +L G + + I + + Sbjct: 323 GSDRSDKIRTYNFPQERITDHRTNLTLYGMEKMLSGELLGEFIQKYQEKIHNAKLQDLLD 382 >gi|71083436|ref|YP_266155.1| peptide chain release factor 2 [Candidatus Pelagibacter ubique HTCC1062] gi|71062549|gb|AAZ21552.1| bacterial peptide chain release factor 2 (RF-2) [Candidatus Pelagibacter ubique HTCC1062] Length = 284 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 99/288 (34%), Positives = 158/288 (54%), Gaps = 13/288 (4%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + + S I ++ + + + + D C +EI AG G Sbjct: 1 MNELALEEKNQSVINEVLESIKNLKKLAKK-----NETKCFLSNETDSLDCYIEIHAGAG 55 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+E+ + L RMY +++ ++ +K E++S ++ G K I G VF +K ESG Sbjct: 56 GTESQDWAEMLRRMYLKWSDIKNFKSELISEHKGEEAGIKSSTIKIEGDYVFGWLKAESG 115 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ ++ R HTS A++ + P I+++I +D+RIDT R+SG+GGQHVNTT Sbjct: 116 IHRLVRISPFDSGARRHTSFASIWIYPVVDENIEIEINEKDLRIDTYRSSGAGGQHVNTT 175 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQI 297 DSAVRITH+P+ I+V +E+SQH+N+ M +L+ARLYD E K+ E + K +I Sbjct: 176 DSAVRITHLPSKIVVQCQNERSQHKNKDTCMNMLKARLYDFELKKKEQESQTVESSKSEI 235 Query: 298 GSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 G G +IR+Y R + D+R N + VL G IDD + L Sbjct: 236 GWG---HQIRSYVLHPYRMVKDNRTNFESSNPDKVLDGEIDDFLESSL 280 >gi|327306561|ref|XP_003237972.1| peptide chain release factor 1 [Trichophyton rubrum CBS 118892] gi|326460970|gb|EGD86423.1| peptide chain release factor 1 [Trichophyton rubrum CBS 118892] Length = 438 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 194/371 (52%), Gaps = 30/371 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + I+P+ + + +D + +L +I + + Sbjct: 53 ALAAEHATLTAQQAESFE----RAAAKRIGEIAPVANALKDWDTAHESITELQGLIDEPS 108 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + L+P+ D C++EIR G GG EA LF Sbjct: 109 TDTELKSLAEDDITTTIGTLSSLSATLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 168 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 ++ RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 169 EMLRMYTSFCSSRGLRTTIIKMEAEDGVGAGAEERLSEVVMEVETPGSYNILRTEAGVHR 228 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 229 VQRVPATEAKGRTHTSAVSVMILPSFPENNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 288 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 289 GAGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 348 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLL 344 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ I+ + Sbjct: 349 MELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIMESVQ 408 Query: 345 TAHQAKMIGSA 355 + + + + Sbjct: 409 SWLVDQEVEAL 419 >gi|303287338|ref|XP_003062958.1| predicted protein [Micromonas pusilla CCMP1545] gi|226455594|gb|EEH52897.1| predicted protein [Micromonas pusilla CCMP1545] Length = 294 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 136/289 (47%), Positives = 193/289 (66%), Gaps = 5/289 (1%) Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD E+ +A E A+ + LE ++ +LLLP D DD ILEIRAG GG EAA F Sbjct: 5 SDDELASMASEEHDALASTVPALEEKLAHLLLPSDDADDGGAILEIRAGAGGDEAARFAA 64 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 +L RMY+ +A R W E ++++ D+GGYK++ +SG V+ +K+ESGVHR R Sbjct: 65 NLARMYDMFARRRGWTFERMTATTTDEGGYKDVTFNVSGDDVYGTLKYESGVHRRVRRVQ 124 Query: 191 TEAS--GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + G+VHTS A+VAV+P A E+++D+ ED+RIDTMRASG+GGQHVNTT+SAVR+TH Sbjct: 125 RVSGDEGKVHTSTASVAVMPHAEEVELDLRDEDVRIDTMRASGAGGQHVNTTNSAVRLTH 184 Query: 249 IPT-GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +P+ ++V E+SQH+N+ +A K+LRAR+Y+ R ER+ RK IGSGDRSER+R Sbjct: 185 VPSGTVVVMMDERSQHKNKEKAFKILRARIYEGLRAEAHRERADQRKSLIGSGDRSERVR 244 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 TYN+ GR+ DHR+N + LE +L G + DI++ L T + + + Sbjct: 245 TYNYKDGRVKDHRVNAQVNDLEGLLNGGDALSDIVDALRTEEKRRALLE 293 >gi|222624780|gb|EEE58912.1| hypothetical protein OsJ_10554 [Oryza sativa Japonica Group] Length = 356 Score = 182 bits (462), Expect = 6e-44, Method: Composition-based stats. Identities = 91/343 (26%), Positives = 151/343 (44%), Gaps = 51/343 (14%) Query: 12 LKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + R ++ + + D + K++ E+ + I ++ ++Q+ E D+ + + Sbjct: 49 ILERSRQLSVVLERPDLWDDPVFAGKVSREHGELMGKIKSVNQFEQELMEHIDMLRLARE 108 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + + + ++AG GG+E+ + Sbjct: 109 EDDNE---------------------------------------LETVQAGAGGTESMDW 129 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 + MY +A R + V ++ + G K + G F K E GVHR+ R+ Sbjct: 130 AAMVMNMYSSWAQRRGYTVSIIEEMPGEIAGIKRATIKVDGEYAFGYAKAEVGVHRLVRI 189 Query: 189 PATEASGRVHTSAATVAVLPE--AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 ++ R HTS A VAV+P I D+RI+ R+ G GGQH N T+SAVRI Sbjct: 190 SPFDSGKRRHTSFAAVAVVPILGDGSTRYQIKDSDLRIERFRSGGPGGQHANCTESAVRI 249 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 HIPTGI +E+SQH N+ AM VL++RL +E R A + + + +I G+ Sbjct: 250 VHIPTGITATCQNERSQHMNKASAMAVLQSRLDQLEIARQAQMNADHTQSLSEISWGN-- 307 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R + D R N + + VL G +DD I L+ Sbjct: 308 -QIRSYVLHPYRMVKDLRTNYEVSDPDSVLNGDLDDFILNFLS 349 >gi|302496498|ref|XP_003010250.1| hypothetical protein ARB_03505 [Arthroderma benhamiae CBS 112371] gi|291173792|gb|EFE29610.1| hypothetical protein ARB_03505 [Arthroderma benhamiae CBS 112371] Length = 438 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 114/371 (30%), Positives = 194/371 (52%), Gaps = 30/371 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + I+P+ + + +D + +L +I + + Sbjct: 53 ALAAEHATLTAKQAESFE----RAAAKRIGEIAPVANALKDWDTAHESITELQGLIDEPS 108 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + L+P+ D C++EIR G GG EA LF Sbjct: 109 TDTELKSLAEDDITTTIGTLSSLSATLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 168 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 ++ RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 169 EMLRMYTSFCSSRGLRTTIIKMEAEDGVGAGAEERLSEVVMEVETPGSYNILRTEAGVHR 228 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 229 VQRVPATEAKGRTHTSAVSVMILPSFPESNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 288 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 289 GAGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 348 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLL 344 R+ +G + R ++IRTYNF+Q R TDHR +T++ + V+ G ++ I+ + Sbjct: 349 MELRRGAMGGVNKTGRGDKIRTYNFTQSRCTDHRSGMTVHNIGKVMDGGENLEKIMESVQ 408 Query: 345 TAHQAKMIGSA 355 + + + + Sbjct: 409 SWLVDQEVEAL 419 >gi|317033212|ref|XP_001395081.2| peptide chain release factor 1 [Aspergillus niger CBS 513.88] Length = 429 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 28/370 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L + + + ++E KL + ++PI S + ++ +L +++ D Sbjct: 49 SLTSEHSTLSAHLAEVFD----AKLAKRVGELAPIASTLKEWEHANSSISELLSLLDDPE 104 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E+R LA ++ + + + + + + L+P+ D C+LEIR G GG EA LF Sbjct: 105 TDAELRSLAVEDLESSKIALPAIADNLKKALIPRHPFADLPCLLEIRPGAGGDEAGLFAF 164 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQR 187 ++ RMY + + R ++ ++ D E V + G + ++ ESGVHRVQR Sbjct: 165 EVLRMYIAFCSRRGFRYSIIKQDVADGPAQDRLSEAVLEVDADGAYDILRTESGVHRVQR 224 Query: 188 VPATEASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGS 232 VPATEA GR HTSA +V +LP D + +++R + MRA G+ Sbjct: 225 VPATEAKGRTHTSAVSVMILPSFPDSGSGLDSSLNFEDPNSDYYVDPQEVRTEKMRAGGA 284 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SA+R+THIPTG +V+ +SQH NR +A +VLRARL + R+ E Sbjct: 285 GGQHVNKTESAIRLTHIPTGTVVSMQDSRSQHANRKKAWQVLRARLAEARREAREQELVN 344 Query: 292 NRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 R+ +G R ++IRTYN+ Q R TDHR LT++ L+ VL G ++ +++ + T Sbjct: 345 LRRGAMGGVARMGRGDKIRTYNYGQNRCTDHRSGLTIHNLDSVLDGGEGLETVMDSVRTW 404 Query: 347 HQAKMIGSAS 356 + I + + Sbjct: 405 LVEREIEAMA 414 >gi|216335|dbj|BAA01123.1| ORF3 [Bacillus subtilis] Length = 299 Score = 182 bits (461), Expect = 8e-44, Method: Composition-based stats. Identities = 104/303 (34%), Positives = 156/303 (51%), Gaps = 10/303 (3%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M++ + K + + ++ Y + + ++L + + ++E Sbjct: 1 MADPEFWNDQQKAQTVINEANGLKDYVNSYKKLNESHEELQMTHDLLKEEPDTDLQLELE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 E E+ L + D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 KELKSLTKEFNEFELQLL--LSEPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWGER 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 R +KVE L D+ G K + I G + +K E GVHR+ R+ ++SGR HTS Sbjct: 119 RGFKVETLDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+PE + D+DI EDI++DT RASG+GGQHVNTTDSAVRITH+PT ++V +E+ Sbjct: 179 SCEVMPEFNDEIDIDIRTEDIKVDTYRASGAGGQHVNTTDSAVRITHLPTNVVVTCQTER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RIT 317 SQ +NR RAMK+L+A+LY + E R Q IG G +IR+Y F + Sbjct: 239 SQIKNRERAMKMLKAKLYQRRIEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSMVK 295 Query: 318 DHR 320 DHR Sbjct: 296 DHR 298 >gi|213969083|ref|ZP_03397222.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudomonas syringae pv. tomato T1] gi|213926081|gb|EEB59637.1| bacterial peptide chain release factor 2 (bRF-2) [Pseudomonas syringae pv. tomato T1] Length = 280 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 104/285 (36%), Positives = 150/285 (52%), Gaps = 11/285 (3%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D D EV + + +LE + + D + L+I+AG+GG+EA Sbjct: 1 MSAEEEDQAAVDDVAAEVERLRASLEKLE----FRRMFSGEMDPNNAYLDIQAGSGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A R + ++ S + G K I G F ++ E GVHR+ Sbjct: 57 QDWANILLRMYLRWADKRGFDATIMELSAGEVAGIKGATVHIKGEYAFGWLRTEIGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS + V V PE + ++DI D+RIDT R+SG+GGQHVNTTDSAV Sbjct: 117 VRKSPFDSGNRRHTSFSAVFVSPEIDDNIEIDINPSDLRIDTYRSSGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGD 301 RITH+PT +V +E+SQH N+ AMK+LRARLY+ E ++ + + K IG G Sbjct: 177 RITHVPTNTVVSCQNERSQHANKDTAMKMLRARLYEQEVQKRNAASQALEDTKSDIGWG- 235 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y RI D R N+ + VL G ID+ + L Sbjct: 236 --HQIRSYVLDASRIKDLRTNIERSDCDKVLDGDIDEYLIASLKQ 278 >gi|116620705|ref|YP_822861.1| peptide chain release factor 2 [Candidatus Solibacter usitatus Ellin6076] gi|116223867|gb|ABJ82576.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus Solibacter usitatus Ellin6076] Length = 322 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 105/323 (32%), Positives = 166/323 (51%), Gaps = 15/323 (4%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 ++ + ++ + + + + Q ++ K EL Sbjct: 1 MQDRKRLEEAVANDDQIRALTDDLDTMFELAREGE-------PVQADIERDLKPYSELLE 53 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 + +L +D +S I+ I G GG+E+ + L RMY R+A K+ + + Sbjct: 54 RLETAMLLSGENDARSAIVTIHPGAGGTESQDWAEMLLRMYLRWAEREKFATVITDRLEG 113 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEID 214 + G K + ++G + ++ E GVHR+ R+ +A+ R HTS A+V V P+ EI Sbjct: 114 EGAGIKSVTFEVNGENAYGLLQSEIGVHRLVRISPFDANARRHTSFASVFVFPQVDDEIK 173 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DI +D+RIDT RASG+GGQHVN TDSAVRITH PTGI+V +E+SQH+NR AMK L Sbjct: 174 IDIQDKDLRIDTFRASGAGGQHVNMTDSAVRITHFPTGIVVQCQNERSQHKNRATAMKQL 233 Query: 274 RARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 RA LY+ E ++ E + + KL+I + +IR Y + R + D R L L ++ Sbjct: 234 RACLYEHELEKKRAETRETEDSKLEI---NFGSQIRNYVLAPYRLVKDLRSKLALGDVDR 290 Query: 331 VLQGYIDDIINPLLTAHQAKMIG 353 VL+G +D +I+ L + I Sbjct: 291 VLEGGLDPLIHSYLVWRKTGKIA 313 >gi|46117472|ref|XP_384754.1| hypothetical protein FG04578.1 [Gibberella zeae PH-1] Length = 445 Score = 182 bits (461), Expect = 9e-44, Method: Composition-based stats. Identities = 111/370 (30%), Positives = 189/370 (51%), Gaps = 37/370 (10%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L ++ ++ S ++ +S + + ++ + ++L ++ Sbjct: 58 QRAQSLTTEHDALQKNLNSSFDSTTAKRVG----ELSRVAEALKALEKSQTSVKELKQML 113 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + D ++ +A+ E+ + ++ L +++ L P+ D C+LE R G GG E Sbjct: 114 DDASLDQDLAAIARDELSSETGQLEALARKLSASLTPRHPFADFPCMLEFRPGPGGLEGR 173 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRM 176 F+ LF+MY+ R ++ V+ D G +E + + +G F Sbjct: 174 FFMDTLFKMYKGLCMRRGYRHTVVKYEFADGAGDSSSSAGENPLQEAILEVHDQGAFDIF 233 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI------------DVDIPLEDIRI 224 + E+G+HRVQR+P+TE GRVHTSA V VLP E D + ++++I Sbjct: 234 RGEAGMHRVQRIPSTETKGRVHTSAVAVWVLPSFPENSATSIDFEDPESDFYVNPQELKI 293 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERK 283 +TMRA G+GGQHVN T+SA+R+TH+PTG V+ +SQ +NR A K++R+R+ D R+ Sbjct: 294 ETMRARGAGGQHVNKTESAIRMTHLPTGTTVSMQDHRSQQRNREEAWKLMRSRIADQRRE 353 Query: 284 RMANERSANR-----KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YI 336 + E S R K QI R ++IRTYN++Q R TDHR + ++ L VL+G + Sbjct: 354 QREQEASQLRNSVLSKTQI---TRGDKIRTYNYNQDRCTDHRAGIDVHGLPNVLEGGEKL 410 Query: 337 DDIINPLLTA 346 D I++ Sbjct: 411 DKIMDGAKDW 420 >gi|257452270|ref|ZP_05617569.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_5R] gi|257465930|ref|ZP_05630241.1| peptide chain release factor 2 [Fusobacterium gonidiaformans ATCC 25563] gi|315917086|ref|ZP_07913326.1| peptide chain release factor 2 [Fusobacterium gonidiaformans ATCC 25563] gi|317058813|ref|ZP_07923298.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_5R] gi|313684489|gb|EFS21324.1| peptide chain release factor 2 [Fusobacterium sp. 3_1_5R] gi|313690961|gb|EFS27796.1| peptide chain release factor 2 [Fusobacterium gonidiaformans ATCC 25563] Length = 326 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 108/331 (32%), Positives = 172/331 (51%), Gaps = 11/331 (3%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVL 84 E + + ++ + ++ + +E ++ +I + E+ + E Sbjct: 2 EEGFWNDKRSSSAVIKTMNEEKALLASFQSLVEEMEEEEVLIEFVEAGDEMSQIELEEKH 61 Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRK 144 + + LL D + I+ I +G GG+EA + L+RMY R+ +K Sbjct: 62 KQLLKDM---ESFSTSLLLDGEYDGNNAIVTIHSGAGGTEACDWADMLYRMYTRWCNDKK 118 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 +KVE + D G K I +SG + +K E G+HR+ R+ +A+ + HTS A+V Sbjct: 119 YKVEEMDFMPGDSVGIKSITFLVSGYHAYGYLKCEKGIHRLVRISPFDANKKRHTSFASV 178 Query: 205 AVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 V+PE E +V+I DIRIDT RASG+GGQHVN TDSAVRITH PTGI+V E+SQ Sbjct: 179 EVVPEVDESVEVEIEASDIRIDTYRASGAGGQHVNMTDSAVRITHFPTGIVVTCQKERSQ 238 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 NR AMK+L+++L ++E K+ E + +IG G +IR+Y F + DH Sbjct: 239 LSNRETAMKMLKSKLLEIELKKKEEEMKKIQGEQSEIGWG---SQIRSYVFQPYTMVKDH 295 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 R + + ++ V+ G +DD +N L ++ K Sbjct: 296 RTGVEIGNIKAVMDGDLDDFMNGYLRWNKKK 326 >gi|32474334|ref|NP_867328.1| peptide chain release factor 2 [Rhodopirellula baltica SH 1] gi|32444872|emb|CAD74874.1| peptide chain release factor 2 (RF-2) [Rhodopirellula baltica SH 1] gi|327543020|gb|EGF29467.1| peptide chain release factor 2 [Rhodopirellula baltica WH47] Length = 337 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 96/327 (29%), Positives = 161/327 (49%), Gaps = 9/327 (2%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M+ + + + + +S ++ + +DL + + D I D + E Sbjct: 1 MAAPDFWNDSESAQKVVMQLKGLKGIVSPLNELESSAEDLEALFEMADEDESIVDEVRSE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + +E + +LE L +D I+ I A GG++A + L RMY +A Sbjct: 61 IDRLEVVLDDLEL----KALLNGPNDSAGAIVTINARDGGTDANDWADMLLRMYSAWAVG 116 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +++K+E+L +N++ G + G + +K E G+HR+ R+ + + TS A Sbjct: 117 QEYKIELLDRQENEEAGINHASIAVRGPMAYGYLKGEEGMHRLVRISPFNSESKRQTSFA 176 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 V+V PE + +V++ +D+R DT RASG+GGQHVN TDSA+R+THIPT +V +++ Sbjct: 177 AVSVSPEIDDSIEVNVEKKDVREDTYRASGAGGQHVNKTDSAIRLTHIPTNTVVQCQNQR 236 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDH 319 SQHQNR A K+LRA+L +E +R E + + Q +G +IR Y R+ D Sbjct: 237 SQHQNRDTAWKMLRAKLARIEEERREAEEAKKYETQARTG-FGSQIRNYFLHPDQRVKDA 295 Query: 320 RINLTLYKLEYVLQG-YIDDIINPLLT 345 R + VL G + + L Sbjct: 296 RTGHYVGNFNSVLDGSELQGFFDAFLR 322 >gi|163788169|ref|ZP_02182615.1| peptide chain release factor RF-2 [Flavobacteriales bacterium ALC-1] gi|159876489|gb|EDP70547.1| peptide chain release factor RF-2 [Flavobacteriales bacterium ALC-1] Length = 315 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 92/313 (29%), Positives = 158/313 (50%), Gaps = 12/313 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 +I S ++ Y+ + +DL + + D + + I +LE Sbjct: 1 MKSIREKKSWVNDYNAAQTLYEDLEVIYEFYKEDEAPMENVENRFEKAVNAIEKLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D S +L+I AG GG+E+ + L RMY YA +KV+ L+ + D Sbjct: 57 FKNMLSEEGDSLSAVLQITAGAGGTESCDWASMLMRMYLMYAEKSGFKVKELNHQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I Sbjct: 117 GIKTVTLEIEGEYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIEI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 DI I T R+SG+GGQ+VN ++ V++ H P+GI + S +SQH NR RAM++L+++ Sbjct: 177 NPADIEITTARSSGAGGQNVNKVETKVQLHHKPSGIQIQCSETRSQHDNRTRAMQMLKSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E ++ +R K++I G +IR Y + + D R ++ V+ Sbjct: 237 LYEIELQKQMAQRDDIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRSAHETGNVDAVMD 293 Query: 334 GYIDDIINPLLTA 346 G I+ + L Sbjct: 294 GDIEPFLKAYLMM 306 >gi|321264047|ref|XP_003196741.1| peptide chain release factor 1, mitochondrial precursor [Cryptococcus gattii WM276] gi|317463218|gb|ADV24954.1| Peptide chain release factor 1, mitochondrial precursor, putative [Cryptococcus gattii WM276] Length = 476 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 119/362 (32%), Positives = 189/362 (52%), Gaps = 17/362 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 ++ + E E + ++ + ++P++ + Y + KQ D+ + D + Sbjct: 110 NVYKKVMENEAKATDIDVKGQIERA-RVQKELAPLLEVWNRYLELKQSIIDMKPFLED-S 167 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + + +LLP + ++ + AG GG E+AL Sbjct: 168 DPTLREMFETEHASLCTELDTLIISTFPTVLLPPSSTASLPAVMSLNAGVGGLESALCTE 227 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----------VFSRMKFE 179 DL RMY R+A R WKVE +S + G + ++ + V+ +++E Sbjct: 228 DLARMYLRFATNRGWKVEEISRVEGTGGKGGGGIRELTVKFEPPQYAEEGTEVYGALQWE 287 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHV 237 GVHR+QRVPA E GR+HTS V VLP + + +D+RID MRA G+GGQHV Sbjct: 288 KGVHRIQRVPANETQGRIHTSTVAVIVLPMYPDTAEAPLVDPKDVRIDVMRARGAGGQHV 347 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVR+THIPTGI V+ +SQHQNR A ++LRARL + + R A+R+ Q Sbjct: 348 NRTESAVRLTHIPTGITVSMQDSRSQHQNRAWAWEILRARLSEKKHNEEVEARRASRRDQ 407 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 + DRS++IRTYNF+Q R+TDHR +T+ L+ VL G ++D+I+ + + + + Sbjct: 408 VKGADRSDKIRTYNFNQDRLTDHRFGITVTGLQRVLDGEGLEDVISMMKKDVDERRLEAL 467 Query: 356 SE 357 E Sbjct: 468 LE 469 >gi|119486315|ref|ZP_01620374.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106] gi|119456528|gb|EAW37658.1| Peptide chain release factor 2 [Lyngbya sp. PCC 8106] Length = 308 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 83/307 (27%), Positives = 147/307 (47%), Gaps = 9/307 (2%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + + + + ++ + ++ + +S + + R L Sbjct: 1 MQQYQQWQKTIEDTDAIVELLELESDESLLAEAESNLTRLNHDLDRW-----ELQQLLSA 55 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D +L I AG GG++A + L RMY R+ +KV + S+ D+ G K + Sbjct: 56 PYDKNGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAHGYKVYLAELSEGDEAGIKSVTL 115 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRI 224 I GR + +K E G HR+ R+ A+G+ TS A V ++P + + ++IP +D+ + Sbjct: 116 EIEGRYAYGYLKCEKGTHRLVRISPFNANGKRQTSFAGVEIMPMIDQGVHLEIPEKDLEV 175 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 T RA G GGQ+VN ++AVRI H+PTGI V + E+SQ QN+ +A+ +L+A+L + ++ Sbjct: 176 TTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTQERSQLQNKEKALALLKAKLLIIAQE 235 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 + A E + R + +IR Y F + + D R + ++ V+ G +D I Sbjct: 236 QRAQEIAEIRGDLVE-AAWGNQIRNYVFHPYQMVKDLRTSEETTAIDDVMNGELDRFIQA 294 Query: 343 LLTAHQA 349 L Sbjct: 295 YLRQENQ 301 >gi|47218558|emb|CAG10257.1| unnamed protein product [Tetraodon nigroviridis] Length = 438 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 117/373 (31%), Positives = 196/373 (52%), Gaps = 24/373 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + L + ++ + ++ K L +A + P+ + + + ++ +++ + Sbjct: 65 QKYLQQLMEECRNVSQKLQHAHLSESERKGLLRRHAELLPVATALDSVRRASRDREEVVS 124 Query: 65 VIGDH---NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG-- 119 ++ + D + E I +++ L ++ LLP D D + +LE+ +G Sbjct: 125 LLQSSSGVDEDKLFTQQLEEEEGHISQKLLSLRRDLVKALLPADPLDSSNVLLEVVSGRT 184 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND------------DGGYKEIVATI 167 TGG F ++F MY+ +A+ + W E ++ ++ + GG A I Sbjct: 185 TGGDICQQFTREVFDMYQGFASHKNWDFEPVNYTNAEYGCDVRGCCLLLSGGLHHAAARI 244 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRI 224 +G V+ +K E G HRVQR+P S R+ HT TV +LP+ AE+D+ + +D+RI Sbjct: 245 TGENVYRHLKHEGGTHRVQRIPEVGLSSRMQRIHTGTMTVIILPQPAELDLHVDPKDLRI 304 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT R+ G+GGQ VNTTDSAVR+ H+PTGI V +SQ QNR AM+ LRARLY Sbjct: 305 DTFRSRGAGGQSVNTTDSAVRVVHLPTGIAVECQQSRSQLQNRDTAMRALRARLYQARLG 364 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIIN 341 + + R + R+ Q+G+ +SERIRTYNFSQ R+TDHR T ++ ++G + D+I Sbjct: 365 KESQRRLSARRQQVGTRSQSERIRTYNFSQDRVTDHRTGYTARDIKEFMRGGQALQDLIG 424 Query: 342 PLLTAHQAKMIGS 354 +L + + + Sbjct: 425 DVLEHAEVEALLE 437 >gi|254304309|ref|ZP_04971667.1| peptide chain release factor RF2 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324501|gb|EDK89751.1| peptide chain release factor RF2 [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 308 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 113/306 (36%), Positives = 162/306 (52%), Gaps = 11/306 (3%) Query: 46 ISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 + +S Y++ E D +I S + E I K E LL Sbjct: 5 KNIVSRYEKLATEIDDEEVLIDFVESGETSFENELSEKHKILKSD---IEEFEINLLLDG 61 Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 D + I+ I +G GG+EA + L+RMY R+ L+ +KV L + D G K + Sbjct: 62 EYDMNNAIVTIHSGAGGTEACDWADMLYRMYLRWCNLKAYKVSELDFMEGDSVGVKSVTF 121 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRI 224 + G + +K E GVHR+ R+ +A+ + HTS A+V V+PE E +V+I DIRI Sbjct: 122 LVEGINAYGYLKSEKGVHRLVRISPFDANKKRHTSFASVEVVPEVDENVEVEINPADIRI 181 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 DT RASG+GGQHVN TDSAVRITH P+GI+V E+SQ NR AMK+L+++L ++E K Sbjct: 182 DTYRASGAGGQHVNMTDSAVRITHFPSGIVVTCQKERSQLSNRETAMKMLKSKLLELELK 241 Query: 284 RMANERSAN--RKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDII 340 + E + IG G+ +IR+Y F + DHR N + ++ V+ G IDD I Sbjct: 242 KKEEEMKKIQGEQSDIGWGN---QIRSYVFQPYALVKDHRTNTEIGNVKAVMDGSIDDFI 298 Query: 341 NPLLTA 346 N L Sbjct: 299 NSYLRW 304 >gi|213026460|ref|ZP_03340907.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 201 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 117/201 (58%), Positives = 156/201 (77%), Gaps = 2/201 (0%) Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HRVQRVPATE+ GR+HTS Sbjct: 1 EARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTS 60 Query: 201 AATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 A TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V Sbjct: 61 ACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQD 120 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITD 318 E+SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDRS+R RTYNF QGR+TD Sbjct: 121 ERSQHKNKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTD 180 Query: 319 HRINLTLYKLEYVLQGYIDDI 339 HRINLTLY+L+ ++G +D + Sbjct: 181 HRINLTLYRLDETMEGKLDML 201 >gi|91762141|ref|ZP_01264106.1| bacterial peptide chain release factor 2 (RF-2) [Candidatus Pelagibacter ubique HTCC1002] gi|91717943|gb|EAS84593.1| bacterial peptide chain release factor 2 (RF-2) [Candidatus Pelagibacter ubique HTCC1002] Length = 284 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 13/288 (4%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ + + + S I ++ + + + + D +C +EI AG G Sbjct: 1 MNELALEEKNQSVINEVLESIKNLKKLAKK-----NETKCFLSNETDSLNCYIEIHAGAG 55 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+E+ + L RMY +++ ++ +K E++S ++ G K I G VF +K ESG Sbjct: 56 GTESQDWAEMLRRMYLKWSDIKNFKSELISEHKGEEAGIKSSTIKIEGDYVFGWLKAESG 115 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ ++ R HTS A++ + P I+++I +D+RIDT R+SG+GGQHVNTT Sbjct: 116 IHRLVRISPFDSGARRHTSFASIWIYPVIDENIEIEINEKDLRIDTYRSSGAGGQHVNTT 175 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQI 297 DSAVRITH+P+ I+V +E+SQH+N+ M +L+ARLYD E K+ E + K +I Sbjct: 176 DSAVRITHLPSKIVVQCQNERSQHKNKDTCMNMLKARLYDFELKKKEQESQTVESSKSEI 235 Query: 298 GSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 G G +IR+Y R + D+R N + +L G IDD + L Sbjct: 236 GWG---HQIRSYVLHPYRMVKDNRTNFESSNPDKILDGEIDDFLESSL 280 >gi|119511140|ref|ZP_01630258.1| peptide chain release factor 2 [Nodularia spumigena CCY9414] gi|119464235|gb|EAW45154.1| peptide chain release factor 2 [Nodularia spumigena CCY9414] Length = 288 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 84/256 (32%), Positives = 135/256 (52%), Gaps = 4/256 (1%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ L D + +L I AG GG++A + L RMY R+A +KV + S+ Sbjct: 25 DQWELQQLLSGPYDAEGAVLTINAGAGGTDAQDWAFMLMRMYTRWAEDHGYKVSLAEESE 84 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D+ G K I+GR + ++ E+G HR+ R+ A+G+ TS A V ++P+ Sbjct: 85 GDEAGIKSATLEITGRYAYGYLRSETGTHRLVRISPFNANGKRQTSFAGVEIMPQLDHSV 144 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++IP +D+ I T RA G GGQ+VN ++AVRI H+PTGI V + E+SQ QN+ +A+ Sbjct: 145 QLEIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTEERSQLQNKDKALAR 204 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 L+A+L + R++ A E + R + +IR Y F + + D R N+ + V Sbjct: 205 LKAKLLVIAREQKAQEVAEIRGDMVE-ASWGNQIRNYVFHPYQMVKDLRTNVETTAISDV 263 Query: 332 LQGYIDDIINPLLTAH 347 + G +D I L Sbjct: 264 MDGDLDSFIQAYLRQE 279 >gi|329889563|ref|ZP_08267906.1| peptide chain release factor 2 [Brevundimonas diminuta ATCC 11568] gi|328844864|gb|EGF94428.1| peptide chain release factor 2 [Brevundimonas diminuta ATCC 11568] Length = 300 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 155/300 (51%), Gaps = 13/300 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 +Q ++ L + + ++ + D K I+E L D Sbjct: 2 EQGLEDGIMLADMADEEGDEATLEDAR-----EQLKAIKERAARAELEALLSGEADGNDA 56 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 LEI +G GG+E+ + G L RMY R+A ++V + + + G K I+G Sbjct: 57 YLEINSGAGGTESNDWAGMLMRMYSRWARAHGYEVTIEAEEQGEQAGIKSATLQIAGPNA 116 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASG 231 + +K ESGVHR+ R+ +A+ + HTS A++ V P I++DI D+R DT RASG Sbjct: 117 YGWLKSESGVHRLVRISPYDAAAKRHTSFASIGVSPVVDDTIEIDINPADVRTDTYRASG 176 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA--NE 288 +GGQH+N TDSAVR+TH+PT +V + +SQHQNR +A K+LRARLY++E ++ + Sbjct: 177 AGGQHINKTDSAVRLTHVPTNTVVACQAGRSQHQNREQAWKMLRARLYELELQKREAAAQ 236 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 A+ K IG G +IR+Y + + D R + + VL G +D + L A Sbjct: 237 ALADAKTDIGWG---HQIRSYVLQPYQMVKDLRTEVETSDTQGVLDGDLDPFMGAALAAR 293 >gi|124024969|ref|YP_001014085.1| peptide chain release factor 2 [Prochlorococcus marinus str. NATL1A] gi|123960037|gb|ABM74820.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. NATL1A] Length = 313 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 155/315 (49%), Gaps = 6/315 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + +++ + +D + + + D + L++ + + + Sbjct: 1 MRQLDEVKAQLEKLITWRGAIEDANLSLELYELDLDEEILSEAHNGLEKLKQEL--DRWE 58 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + +L I AG GG++A + L RMY R+A KV + S+ ++ Sbjct: 59 TERLLSGIYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWADNNGMKVIINELSEGEEA 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K + I G + ++ E G HR+ R+ A+G+ TS A V V+P+ E++++I Sbjct: 119 GIKSVTIEIEGVYAYGFLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPKLDEEVELEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 P +D+ I T R+ G+GGQ+VN ++AVRI H+PTGI V + E+SQ QN+ +AM +L+++ Sbjct: 179 PEKDLEITTSRSGGAGGQNVNKVETAVRILHVPTGIAVRCTQERSQLQNKDKAMALLKSK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 L + ++ A E + R I +IR Y F + + D R ++ V+ G Sbjct: 239 LMVIALEQRAAEIADIR-GDIVEAAWGNQIRNYVFHPYQMVKDLRTEQETTDVDSVMNGE 297 Query: 336 IDDIINPLLTAHQAK 350 ID I LL + + Sbjct: 298 IDIFIQSLLRQNIEE 312 >gi|226493092|ref|NP_001141218.1| hypothetical protein LOC100273305 [Zea mays] gi|194703328|gb|ACF85748.1| unknown [Zea mays] Length = 407 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 112/370 (30%), Positives = 188/370 (50%), Gaps = 37/370 (10%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L + +++ ++ S + + +S + + + + +L +++ Sbjct: 22 QRAQSLTSEHDDLQKTLNNSFD----SSIAKRVGELSRVAEALKAWQTSQASVAELTSML 77 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D + D+++ +A+ E+ + ++ L ++ L P+ D C+LE R G GG E Sbjct: 78 DDPDQDADLAAIARDELSSETGKLESLARRLSASLTPRHPFADFPCMLEFRPGPGGLEGR 137 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRM 176 F+ LF+MY+ R ++ V+ D G +E + + G F Sbjct: 138 YFMDTLFKMYKALCMRRGYRHTVVKYEFADTAGDSSSSAGENPLQEAILEVHDPGAFDIF 197 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI------------DVDIPLEDIRI 224 + E+G+HRVQR+P+TE GRVHTSA V VLP E D + ++++I Sbjct: 198 RSEAGMHRVQRIPSTETKGRVHTSAVAVWVLPSFPENGAANIDFDDPESDFYVNPQEVKI 257 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERK 283 +TMRA G+GGQHVN T+SA+R+TH+PTG V+ +SQ +NR A K+LR+R+ D R+ Sbjct: 258 ETMRARGAGGQHVNKTESAIRMTHLPTGTTVSMQDHRSQQRNREEAWKLLRSRIADQRRE 317 Query: 284 RMANERSANR-----KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YI 336 E S R K QI R ++IRTYN++Q R TDHR + ++ L VL+G + Sbjct: 318 AREEEASNLRNSVLSKTQI---TRGDKIRTYNYNQDRCTDHRAGVDVHDLPNVLEGGEKL 374 Query: 337 DDIINPLLTA 346 D I++ Sbjct: 375 DRIMDGAKDW 384 >gi|282898121|ref|ZP_06306116.1| Peptide chain release factor 2 [Raphidiopsis brookii D9] gi|281197265|gb|EFA72166.1| Peptide chain release factor 2 [Raphidiopsis brookii D9] Length = 290 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 140/292 (47%), Gaps = 12/292 (4%) Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L + D E + ++ L D + +L I AG Sbjct: 2 ELLELEADEGLLQEAETTINQMHRDL--------DQWELQQLLSGPYDSQGAVLTINAGA 53 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG++A + L RMY R+A +KV + S+ D+ G K I+GR + ++ E Sbjct: 54 GGTDAQDWAFMLMRMYTRWAEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRAEM 113 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQHVNT 239 G HR+ R+ A+G+ TS A V V+P+ +IP +D+ + T RA G GGQ+VN Sbjct: 114 GTHRLVRISPFNANGKRQTSFAGVEVMPQIDNSVTLEIPEKDLEVTTSRAGGKGGQNVNK 173 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 ++AVRI HIPTGI V + E+SQ QN+ +A+ L+A+L + R++ A E + R + Sbjct: 174 VETAVRIVHIPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAREQRAQEIAEIRGDMVE 233 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R NL + V+ G +D+ I L Sbjct: 234 -ASWGNQIRNYVFHPYQIVKDLRTNLETTAIIDVMNGDLDNFIQAYLRQENQ 284 >gi|195435374|ref|XP_002065668.1| GK14545 [Drosophila willistoni] gi|194161753|gb|EDW76654.1| GK14545 [Drosophila willistoni] Length = 397 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 120/353 (33%), Positives = 194/353 (54%), Gaps = 11/353 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ + + R++ + + +Y +L+ + +++ + ++ + + Sbjct: 37 LESLRQEYYAL--RVNAAGNSKSYARLS----QLEGVVNALEQRRVLERNLTSQKDLEQE 90 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + D + + + + + ++ + + LL D + S + + +G GG EA LF Sbjct: 91 KDED-MRQLMEEENQVYTDLLAKQEQTMLQELLTLADDEVYPSLLFGVNSGAGGQEAMLF 149 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L+ MY Y W E + D GG + I+ + ++ +++E+GVHRVQRV Sbjct: 150 AQELYEMYTSYFEHMDWDYEEFARETTDIGGLRHANILINDQDAYNWLRYEAGVHRVQRV 209 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 PATE SGR+HTS A++ V+P+ A++ V +D+RI+T RASG+GGQHVNTTDSAVRI H Sbjct: 210 PATEKSGRIHTSTASITVIPKPADVQVHTAEKDLRIETKRASGAGGQHVNTTDSAVRIVH 269 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG+ V SE+SQ +NR A+K L+ARL + + A +K Q GS +R+E+IR Sbjct: 270 LPTGLAVEAQSERSQLKNREVALKRLQARLVQQQLESSEATHLATKKAQQGSLNRNEKIR 329 Query: 308 TYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 TYNF Q RITDHRI N TL+ L LQG + +I L + + E Sbjct: 330 TYNFVQDRITDHRIQNGTLHNLNGFLQGGEQLSGLIEKLQLEQRKARLVEMLE 382 >gi|58260798|ref|XP_567809.1| hypothetical protein CNK01240 [Cryptococcus neoformans var. neoformans JEC21] gi|134117261|ref|XP_772857.1| hypothetical protein CNBK2280 [Cryptococcus neoformans var. neoformans B-3501A] gi|50255475|gb|EAL18210.1| hypothetical protein CNBK2280 [Cryptococcus neoformans var. neoformans B-3501A] gi|57229890|gb|AAW46292.1| hypothetical protein CNK01240 [Cryptococcus neoformans var. neoformans JEC21] Length = 480 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 117/360 (32%), Positives = 191/360 (53%), Gaps = 17/360 (4%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 ++ + E E + ++ + ++P++ + Y + KQ ++ + D + Sbjct: 114 NVYKKVTEDEAKATDIDIKSQIERA-RVQKELAPLVEVWNKYLELKQSIIEIKPFLED-S 171 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + + + + + + +LLP + ++ + AG GG E+AL Sbjct: 172 DPTLRQMFEAEHASLGTELDALITSTLPIVLLPPLSTAALPAVMSLNAGVGGLESALCTE 231 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG-----------VFSRMKFE 179 DL RMY R+A R WKVE +S + G + ++ + V+ +++E Sbjct: 232 DLARMYLRFATNRGWKVEEISRVEGTGGKGGGGIRELTVKFEPPQYAEEGIEVYGALQWE 291 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMRASGSGGQHV 237 GVHR+QRVPA E GR+HTS V VLP + + +D+RID MRA G+GGQHV Sbjct: 292 KGVHRIQRVPANETQGRIHTSTVAVIVLPMYPDTAEAPLVDPKDVRIDVMRARGAGGQHV 351 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N T+SAVR+THIPTGI V+ +SQHQNR A ++LRARL + + R A+R+ Q Sbjct: 352 NRTESAVRLTHIPTGITVSMQDSRSQHQNRTWAWEILRARLSEKKHNEEVEARRASRRDQ 411 Query: 297 IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 + DRS++IRTYNF+Q R+TDHR +T+ L++VL G ++D+I+ + + + + Sbjct: 412 VKGADRSDKIRTYNFNQDRLTDHRFGITVTGLQHVLDGEGLEDVISMMKKDFNERRLEAL 471 >gi|134079787|emb|CAK40922.1| unnamed protein product [Aspergillus niger] Length = 462 Score = 181 bits (458), Expect = 2e-43, Method: Composition-based stats. Identities = 120/370 (32%), Positives = 196/370 (52%), Gaps = 28/370 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L + + + ++E KL + ++PI S + ++ +L +++ D Sbjct: 82 SLTSEHSTLSAHLAEVFD----AKLAKRVGELAPIASTLKEWEHANSSISELLSLLDDPE 137 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E+R LA ++ + + + + + + L+P+ D C+LEIR G GG EA LF Sbjct: 138 TDAELRSLAVEDLESSKIALPAIADNLKKALIPRHPFADLPCLLEIRPGAGGDEAGLFAF 197 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQR 187 ++ RMY + + R ++ ++ D E V + G + ++ ESGVHRVQR Sbjct: 198 EVLRMYIAFCSRRGFRYSIIKQDVADGPAQDRLSEAVLEVDADGAYDILRTESGVHRVQR 257 Query: 188 VPATEASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGS 232 VPATEA GR HTSA +V +LP D + +++R + MRA G+ Sbjct: 258 VPATEAKGRTHTSAVSVMILPSFPDSGSGLDSSLNFEDPNSDYYVDPQEVRTEKMRAGGA 317 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SA+R+THIPTG +V+ +SQH NR +A +VLRARL + R+ E Sbjct: 318 GGQHVNKTESAIRLTHIPTGTVVSMQDSRSQHANRKKAWQVLRARLAEARREAREQELVN 377 Query: 292 NRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 R+ +G R ++IRTYN+ Q R TDHR LT++ L+ VL G ++ +++ + T Sbjct: 378 LRRGAMGGVARMGRGDKIRTYNYGQNRCTDHRSGLTIHNLDSVLDGGEGLETVMDSVRTW 437 Query: 347 HQAKMIGSAS 356 + I + + Sbjct: 438 LVEREIEAMA 447 >gi|47096965|ref|ZP_00234541.1| peptide chain release factor 1 [Listeria monocytogenes str. 1/2a F6854] gi|47014675|gb|EAL05632.1| peptide chain release factor 1 [Listeria monocytogenes str. 1/2a F6854] Length = 314 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 129/277 (46%), Positives = 191/277 (68%), Gaps = 5/277 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNEQINETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E ++KE +LE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEEFAELQKEKADLEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A ++G FSRMK+E+G H Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMMNGNDAFSRMKYENGAH 181 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 RVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ VNTT SA Sbjct: 182 RVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQSVNTTMSA 241 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYD 279 VR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD Sbjct: 242 VRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYD 278 >gi|294507807|ref|YP_003571865.1| peptide chain release factor RF-2 [Salinibacter ruber M8] gi|294344135|emb|CBH24913.1| peptide chain release factor RF-2 [Salinibacter ruber M8] Length = 349 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 95/345 (27%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 E+ + D + E I+ I ++ K++ +D+ T+ + E Sbjct: 4 EELNQERMDPDFWDDPDRAREIEKRIAREEEWIEAWEDVKEQAEDIETLQLLSEEEGEDM 63 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 A + + + + + L D DD++ I+EI G GG+E+ + L RMY Sbjct: 64 SDEID---AEARRLEQKLDRLELESLLDDPDDERDAIVEINPGAGGTESQDWAEMLLRMY 120 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + + VE++ ++ G K + GR + R+K E+GVHR+ R+ +A R Sbjct: 121 MRWAEDQDYDVELVHQQPGEEAGIKSATLNVQGRHAYGRLKSETGVHRLVRISPFDADSR 180 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-- 253 HTS A+V V PE + VD+ +I + T R+ G GGQHVN ++ VR+ T Sbjct: 181 RHTSFASVFVYPEVDDSIGVDLSEGEIELQTFRSGGKGGQHVNKVETGVRLIWTGTLSNG 240 Query: 254 ------MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 + E+SQHQNR RA ++L++R+Y ER+ E+ + S + +IR Sbjct: 241 EETTVRAACTQERSQHQNRRRAREMLKSRIYQAERELKEEEKERLESSK-KSIEWGSQIR 299 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 +Y + DHR + E VL+G +D I L + Sbjct: 300 SYVLHPYKMVNDHRTDTKRNDAEAVLEGGLDPFIKAYLLKGKKDR 344 >gi|295657325|ref|XP_002789232.1| peptide chain release factor 1 [Paracoccidioides brasiliensis Pb01] gi|226284000|gb|EEH39566.1| peptide chain release factor 1 [Paracoccidioides brasiliensis Pb01] Length = 438 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 117/350 (33%), Positives = 188/350 (53%), Gaps = 30/350 (8%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + A + +++ES + K + ++ + + +D+ + +L+ ++ D + Sbjct: 51 SIADEHASLTSKLAESFNP----KTAKRVGELATTATALKEWDKAHESISELNALLEDSS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DS++R LA ++ + L + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSDLRSLALEDLQTTTASLSVLSENLKQALIPRHPFADLPCLLELRPGAGGDEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGYKEI----VATISGRGVFSRMKFESGVH 183 +L RMY + A R + +L S + GG ++ V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCANRGLRATLLKKESENAGASGGSEDRLAEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVD---------------IPLEDIRIDTMR 228 RVQRVPATE+ GR HTSA +V +LP + I ++ ++ MR Sbjct: 227 RVQRVPATESKGRTHTSAVSVVILPSFPRNGEEGDGELNFDDPNSDFYIDPREVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A ++LRAR+ R+ Sbjct: 287 ASGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWQLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQ---IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 E R+ +G R ++IRTYNF Q R TDHR LTL+ L +++G Sbjct: 347 EMVKLRRGAMGGVGKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLVDIMEG 396 >gi|72383384|ref|YP_292739.1| peptide chain release factor 2 [Prochlorococcus marinus str. NATL2A] gi|72003234|gb|AAZ59036.1| bacterial peptide chain release factor 2 (bRF-2) [Prochlorococcus marinus str. NATL2A] Length = 313 Score = 180 bits (457), Expect = 3e-43, Method: Composition-based stats. Identities = 87/315 (27%), Positives = 154/315 (48%), Gaps = 6/315 (1%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + +++ + +D + + + D + L++ + + Sbjct: 1 MRQLDEVKAELEKLITWRGAIEDANLSVELYELDPDEEILSEAHNGLEQLKQEL--ERWE 58 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + +L I AG GG++A + L RMY R+A KV + S+ ++ Sbjct: 59 TERLLSGIYDKEGAVLSINAGAGGTDAQDWAQMLLRMYTRWAENNGMKVSINELSEGEEA 118 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDI 217 G K + I G + ++ E G HR+ R+ A+G+ TS A V V+P+ E++++I Sbjct: 119 GIKSVTIEIEGVYAYGFLQNEKGTHRLVRISPFNANGKRQTSFAGVEVMPKLDEEVELEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 P +D+ I T R+ G+GGQ+VN ++AVRI H+PTGI V + E+SQ QN+ +AM +L+++ Sbjct: 179 PEKDLEITTSRSGGAGGQNVNKVETAVRILHVPTGIAVRCTQERSQLQNKDKAMALLKSK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 L + ++ A E + R I +IR Y F + + D R ++ V+ G Sbjct: 239 LMVIAVEQRAAEIADIR-GDIVEAAWGNQIRNYVFHPYQMVKDLRTEQETTDVDSVMNGK 297 Query: 336 IDDIINPLLTAHQAK 350 ID I LL + + Sbjct: 298 IDIFIQSLLRQNIEE 312 >gi|332886361|gb|EGK06605.1| peptide chain release factor 2 [Dysgonomonas mossii DSM 22836] Length = 318 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 92/324 (28%), Positives = 153/324 (47%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 I + I Y++ K +L + I LE Sbjct: 1 MKIIRGLKGWIEGYNEVKASTDELQLAFDFQKEGITTEEEVDEAYKNALSLIENLEL--- 57 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D +L+I +G GG+E + LFRMY+R+ +K+K + + D D+ Sbjct: 58 -KNMLRREEDKLGAVLKINSGAGGTEGQDWASMLFRMYQRWCEDKKYKTTITNWQDGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + G + +K E+GVHR+ RV A G+ TS A+V V+P ID+DI Sbjct: 117 GIKTATLQVEGEYAYGYLKSENGVHRLVRVSPFNAQGKRMTSFASVFVVPLVDDTIDIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 L DI DT R+SG+GGQ+VN ++ VR+ + ++ + +SQ N+ Sbjct: 177 NLSDITWDTFRSSGAGGQNVNKVETGVRLHYKYKDPETGEEKEIVIENTESRSQFGNKDN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 A+++L+++LY++E +R + E+S K +I G +IR+Y F R+ DHR N Sbjct: 237 AIRLLKSQLYELELERRSREQSKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G +DD I L + + Sbjct: 294 NVNAVMDGDLDDFIKEYLMEYGEE 317 >gi|213962528|ref|ZP_03390790.1| peptide chain release factor 2 [Capnocytophaga sputigena Capno] gi|213954854|gb|EEB66174.1| peptide chain release factor 2 [Capnocytophaga sputigena Capno] Length = 317 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 90/312 (28%), Positives = 158/312 (50%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + Y++ + D+ ++ D + I LE Sbjct: 2 MRELRTQKKWVEDYEEAESLTSDVEVLLDFFKEGEATADEVDQQYAQALHAIEALE---- 57 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D D S +L+I AG GG+E+ + L RMY + +K+KV+ L+ + D Sbjct: 58 FRNMLSDEGDAMSAVLQITAGAGGTESCDWASMLLRMYTMWCNNQKYKVKTLNFQEGDVA 117 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I Sbjct: 118 GIKTVTIEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDTIEIEI 177 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 DI +TMR+SG+GGQ+VN ++AVR+ H PTGI++ S +SQ N+ +A+++L+++ Sbjct: 178 NPADITFETMRSSGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQ 237 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E K+ +R K++I G +IR Y + + D R N ++ V+ Sbjct: 238 LYEIELKKRQAKRDEIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRTNYESTDVDSVMN 294 Query: 334 GYIDDIINPLLT 345 G +D+ + L Sbjct: 295 GELDEFLKAYLM 306 >gi|75908996|ref|YP_323292.1| peptide chain release factor 2 [Anabaena variabilis ATCC 29413] gi|75702721|gb|ABA22397.1| bacterial peptide chain release factor 2 (bRF-2) [Anabaena variabilis ATCC 29413] Length = 292 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 142/289 (49%), Gaps = 9/289 (3%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ +++ + L D + +L I AG GG+ Sbjct: 3 ELLELETDEALLQEAESTITKLNRDLDQW-----ELQQLLSGPYDAEGAVLTINAGAGGT 57 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+A + +KV + S+ D+ G K I+GR + ++ E+G H Sbjct: 58 DAQDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTH 117 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ A+G+ TS A V V+P+ + +DIP +D+ I T R+ G GGQ+VN ++ Sbjct: 118 RLVRISPFNANGKRQTSFAGVEVMPQLDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVET 177 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ H+PTGI V + E+SQ QN+ +A+ L+A+L + +++ A E + R + Sbjct: 178 AVRVVHLPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAQEQKAQEIAQIRGDMVE-AS 236 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R N + V+ G +D I L Sbjct: 237 WGNQIRNYVFHPYQMVKDLRTNAETTAIADVMNGELDMFIQAYLRQENQ 285 >gi|168702592|ref|ZP_02734869.1| peptide chain release factor 2 [Gemmata obscuriglobus UQM 2246] Length = 342 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 87/340 (25%), Positives = 141/340 (41%), Gaps = 13/340 (3%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 ++E + +E + K + + + Y++ D+ + D+ Sbjct: 3 DQLEAKQAEGDFWNNPEKAKSVIGQLKVCNALLKPYEELTAAANDIKAMAELAEEDAAFE 62 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 + + E + E +I D +S I+ I+ G GG++A F LFR Y Sbjct: 63 SELEPALQKAETQYEAFELQIMM----GGKHDSRSAIVTIKPGAGGTDACDFAEMLFRAY 118 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + VE N + G + I G + M+ E GVHR+ R+ Sbjct: 119 GRWAQRHGFSVEDEDIEPNQEAGVASVSFKIVGPYAYGYMQSEIGVHRLVRISPFGGGDT 178 Query: 197 VHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 TS A + VLPE + I D + T G GGQHVN T S VR+ H Sbjct: 179 RQTSFAAIDVLPELPDDIEIVIKDTDYEVQTFSTGGPGGQHVNKTQSGVRLIHKSGIRAE 238 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE--RSANRKLQIGSGDRSERIRTYNFSQ 313 +SQH+N+ A+K+L+ RL VE ++ + +S + K +I G +IR+Y Sbjct: 239 CRMGRSQHKNKAEALKMLQTRLEAVEEQKRMGDAVKSYDAKGEIAFG---SQIRSYVLQP 295 Query: 314 G-RITDHR--INLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + D R I++ + VL G D ++ L AK Sbjct: 296 YTLVRDERDGIDVKTPAVNDVLDGNFDQFMHAYLRHKAAK 335 >gi|332877580|ref|ZP_08445324.1| putative peptide chain release factor 2 [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332684429|gb|EGJ57282.1| putative peptide chain release factor 2 [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 315 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 89/312 (28%), Positives = 157/312 (50%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + Y++ + D+ ++ + + I LE Sbjct: 1 MRELRVKKKWVEDYEEAESLTSDVEVMLDFLKDGEASAEEVDQQYTQALHAIEALE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D D S +L+I AG GG+E+ + L RMY + +K+KV+ L+ + D Sbjct: 57 FRNMLSDEGDAMSAVLQITAGAGGTESCDWASMLLRMYTMWCNNQKYKVKTLNFQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I Sbjct: 117 GVKTVTIEIEGEYAFGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDTIEIEI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 DI +TMR+SG+GGQ+VN ++AVR+ H PTGI++ S +SQ N+ +A+++L+++ Sbjct: 177 NPADITFETMRSSGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E K+ +R K++I G +IR Y + + D R ++ V+ Sbjct: 237 LYEIELKKRQAKRDEIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRTGYESTDVDSVMN 293 Query: 334 GYIDDIINPLLT 345 G +DD + L Sbjct: 294 GELDDFLKAYLM 305 >gi|34580696|ref|ZP_00142176.1| peptide chain release factor RF-2 [Rickettsia sibirica 246] gi|28262081|gb|EAA25585.1| peptide chain release factor RF-2 [Rickettsia sibirica 246] Length = 285 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 154/287 (53%), Gaps = 12/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D E + ++ + + E L D +C LEI AG GG+E+ Sbjct: 1 MAEAENDLETLSQIEQDLKNLSIIAAKFET----ECLFSGEADGNNCFLEINAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ Sbjct: 57 HDWASIMMRMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTETGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAV Sbjct: 117 VRISPFNAAGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTG + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G Sbjct: 177 RITHIPTGTVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG- 235 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + D R + + VL G +++ ++ L + Sbjct: 236 --HQIRSYVLQPYHMVKDLRTDYETSDTKGVLDGDLEEFVSANLAMN 280 >gi|288923233|ref|ZP_06417373.1| peptide chain release factor 2 [Frankia sp. EUN1f] gi|288345407|gb|EFC79796.1| peptide chain release factor 2 [Frankia sp. EUN1f] Length = 366 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 96/330 (29%), Positives = 149/330 (45%), Gaps = 14/330 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I L+ R E+E ++ + +S + I+ D ++ DL + Sbjct: 24 DIEGLRRRAQELEQEAADPDLWSDQARAQAVTRRLSGVKGDIARVDGLRRRLDDLIAALD 83 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D + L + + L D++ I+++ AG GG +AA Sbjct: 84 LGDEDLLAEMAVDLPSLTRDISA------LEVRTLLSGEYDERDAIVQLSAGAGGVDAAD 137 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV +S+ ++ G K + + ++ E GVHR+ R Sbjct: 138 WTAMLLRMYLRWAERHGYATEVFDTSEAEEAGLKSATFQVRCPYAYGTLRSEHGVHRLVR 197 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V P VDI +++RID R+SG GGQ VNTTDSAVRI Sbjct: 198 ISPFDNQNRRQTSFAGVEVTPAVEVSDHVDIDEKELRIDIFRSSGPGGQGVNTTDSAVRI 257 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PTGI+V +E+SQ QN+ AM VL+A+L + R A E+ + G Sbjct: 258 THLPTGIVVTCQNERSQLQNKAAAMMVLQAKLLERRRAEEAAEKQRLTGGPQDVSFG--- 314 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVL 332 +IR Y + + D R + VL Sbjct: 315 SQIRNYVLHPYQMVKDLRTEVETSNTGAVL 344 >gi|228469749|ref|ZP_04054715.1| peptide chain release factor 2, programmed [Porphyromonas uenonis 60-3] gi|228308684|gb|EEK17417.1| peptide chain release factor 2, programmed [Porphyromonas uenonis 60-3] Length = 328 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 22/328 (6%) Query: 31 AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEI 90 + I I D QE + + + + D A + Sbjct: 3 RAQQQMRRVGEIRSWIEAFEAVDAATQEVALAYDFYKEEAVEEQDVDDAYARAIK----- 57 Query: 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL 150 L ++ + +D +L++ AG GG+E+ + L RMY+R+A +KV + Sbjct: 58 --LVEDLELRNMLSAEEDRLGAVLKVNAGAGGTESQDWASMLVRMYQRWAERSGYKVTIT 115 Query: 151 SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-E 209 + D DD G K + I G + +K E+GVHR+ RV A G+ TS A+V V+P Sbjct: 116 NWQDGDDAGVKTVTMQIEGELAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLV 175 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEK 260 I+V++ + DT R+SG+GGQ+VN ++ VR+ + T ++ + + Sbjct: 176 DDSIEVEVNPALLSWDTFRSSGAGGQNVNKVETGVRLHYQYTDPDTGVPEEIVIENTETR 235 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGRITD 318 SQ +NR A+++LR++LYD E +R ++ K +I G +IR+Y F R+ D Sbjct: 236 SQLENRENALRLLRSQLYDKELERRRAAQNEVEANKKKIEWG---SQIRSYVFDDRRVKD 292 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTA 346 HR + V+ G ID I L Sbjct: 293 HRTGYQTSDVNGVMDGDIDAFIKAYLMQ 320 >gi|313886616|ref|ZP_07820328.1| peptidyl-tRNA hydrolase domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312923912|gb|EFR34709.1| peptidyl-tRNA hydrolase domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 328 Score = 180 bits (455), Expect = 4e-43, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 148/328 (45%), Gaps = 22/328 (6%) Query: 31 AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEI 90 + I I D QE + + + + D A + Sbjct: 3 RAQQQMRRVGEIRSWIEAFEAVDAATQEVALAYDFYKEEAVEEQDVDDAYARAIK----- 57 Query: 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL 150 L ++ + +D +L+I AG GG+E+ + L RMY+R+A +KV + Sbjct: 58 --LVEDLELRNMLSAEEDRLGAVLKINAGAGGTESQDWASMLVRMYQRWAERSGYKVTIT 115 Query: 151 SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-E 209 + D DD G K + I G + +K E+GVHR+ RV A G+ TS A+V V+P Sbjct: 116 NWQDGDDAGIKTVTMQIEGELAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLV 175 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEK 260 I+V++ + DT R+SG+GGQ+VN ++ VR+ + T ++ + + Sbjct: 176 DDSIEVEVNPGLLSWDTFRSSGAGGQNVNKVETGVRLHYQYTDPDTGETEEIVIENTETR 235 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGRITD 318 SQ NR A+++LR++LYD E +R +S K +I G +IR+Y F R+ D Sbjct: 236 SQMDNRENALRLLRSQLYDKELERRRAAQSEVEANKKKIEWG---SQIRSYVFDDRRVKD 292 Query: 319 HRINLTLYKLEYVLQGYIDDIINPLLTA 346 HR + V+ G +D I L Sbjct: 293 HRTGYQTSDVNGVMDGDLDAFIKAYLMQ 320 >gi|17227769|ref|NP_484317.1| peptide chain release factor 2 [Nostoc sp. PCC 7120] gi|17135251|dbj|BAB77797.1| peptide chain release factor [Nostoc sp. PCC 7120] Length = 292 Score = 180 bits (455), Expect = 5e-43, Method: Composition-based stats. Identities = 83/289 (28%), Positives = 143/289 (49%), Gaps = 9/289 (3%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ ++ +++ + L D + +L I AG GG+ Sbjct: 3 ELLELETDEALLQEAESTITKLNRDLDQW-----ELQQLLSGPYDAEGAVLTINAGAGGT 57 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+A + +KV + S+ D+ G K I+GR + ++ E+G H Sbjct: 58 DAQDWAFMLLRMYTRWAEDQGYKVALAEESEGDEAGIKSATLEITGRYAYGYLRSETGTH 117 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ A+G+ TS A V V+P+ + +DIP +D+ I T R+ G GGQ+VN ++ Sbjct: 118 RLVRISPFNANGKRQTSFAGVEVMPQLDNTVQLDIPDKDLEITTTRSGGKGGQNVNKVET 177 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVR+ H+PTGI V + E+SQ QN+ +A+ L+A+L + +++ A E + R + Sbjct: 178 AVRVVHLPTGIAVRCTEERSQLQNKEKALARLKAKLLVIAQEQKAQEIAQIRGDMVE-AS 236 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R N+ + V+ G +D I L Sbjct: 237 WGNQIRNYVFHPYQMVKDLRTNVETTAIADVMNGELDMFIQSYLRQENQ 285 >gi|145629736|ref|ZP_01785532.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21] gi|144978073|gb|EDJ87852.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21] Length = 267 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 126/269 (46%), Positives = 185/269 (68%), Gaps = 9/269 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ LK R+ E+E + + + D + ++EY+ + ++ + + Q Q Sbjct: 2 MKDSIIAKLESLKERYEELEALLGDVSVISDQDKFRAYSKEYSQLEEVVKCFNRWTQLNQ 61 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEIR Sbjct: 62 NIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEIR 117 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EA +F GDLFRMY RYA ++W +EVLS ++++ GG+KEI+ +SG GV+ ++K Sbjct: 118 AGTGGDEAGIFAGDLFRMYSRYAESKRWSMEVLSENESEQGGFKEIIVLVSGEGVYGQLK 177 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAV+PE E ++ +I D+RIDT R+SG+GGQH Sbjct: 178 FESGGHRVQRVPKTESQGRIHTSACTVAVMPELPESEMPEINPADLRIDTYRSSGAGGQH 237 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 VNTTDSAVRITHIPTGI+V E+SQH+ Sbjct: 238 VNTTDSAVRITHIPTGIVVECQDERSQHK 266 >gi|219123603|ref|XP_002182112.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406713|gb|EEC46652.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 406 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 89/363 (24%), Positives = 159/363 (43%), Gaps = 18/363 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIK-----LTEEYAAISPIISKISIYDQKKQEEQDL 62 ++ L+++ A++E S+ D + + + + ++++I + + + Q Sbjct: 43 KLPALQSQIADLETEQSQPDFWDEANTSRAAIVNAQVSTATRLLTRIQAWQEWHGDAQAA 102 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ S+ R + E + +RE + LL D L + AG GG Sbjct: 103 LEILSQLASEE--RAMLLDEFRSAIARLREDSDRFELELLLSGPYDHAPARLLLTAGAGG 160 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +EA +VGDL RMY+R+ V + GYK + +SG + ++ E G Sbjct: 161 TEANDWVGDLKRMYQRHCEAMGLSCVVQDEQAGEAVGYKSVELLVSGDNAYGWLQGEKGA 220 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-------DIRIDTMRASGSGGQ 235 HR+ R+ A+ + T+ A V V P+ D D ++ I TMRA G GGQ Sbjct: 221 HRMVRLSPFNANNKRQTTFAGVDVAPDILNQDDDAYWNTIDVPESELEITTMRAGGKGGQ 280 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 +VN +SAVRI H+P+G+ V + E+SQ N+ A+K L+A+L + +++ E R Sbjct: 281 NVNKVNSAVRIKHLPSGLQVKCAQERSQSMNKNIALKRLKAQLLAIVQEQRVAEIKEIRG 340 Query: 295 LQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMI 352 + +IR Y F + D R ++ + G +++ I L + Sbjct: 341 DMVE-ASWGAQIRNYVFHPYKMVKDQRTGWETSNVQAFMDGDLLEECIGSFLRHKAEEQR 399 Query: 353 GSA 355 Sbjct: 400 KEQ 402 >gi|242050470|ref|XP_002462979.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor] gi|241926356|gb|EER99500.1| hypothetical protein SORBIDRAFT_02g035755 [Sorghum bicolor] Length = 363 Score = 179 bits (454), Expect = 5e-43, Method: Composition-based stats. Identities = 89/322 (27%), Positives = 152/322 (47%), Gaps = 5/322 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ A +E + ++S D K E +++ + ++ + + K + ++ T++ Sbjct: 43 LEQLEEDIASLEKKSADSSLWDDPSKAQEILVSLTEVKDRVKLLNDFKLQVEEAETIVKL 102 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 I E I K + + + L D + ++ I AG GG++A + Sbjct: 103 TEELDSIDTGLLEEASKIIKALNKALDNFEMTQLLSGPYDKEGAVINISAGAGGTDAQDW 162 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K V+ S ++ G K + GR + + E G HR+ R Sbjct: 163 ADMLLRMYVRWGEKQRYKTRVVEKSPGEEAGIKSATVELEGRYAYGYISGEKGTHRIVRQ 222 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 A G TS A V V+P + VDIP ED+ I RA G GGQ+VN ++AVR+ Sbjct: 223 SPFNAKGLRQTSFAGVEVMPLLPEESMAVDIPEEDLDISFTRAGGKGGQNVNKVETAVRM 282 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 HIPTGI V S E+SQ N+++A+ L+A+L + ++ A+E R + + ++ Sbjct: 283 VHIPTGIAVRCSEERSQLANKIKALNRLKAKLLVIAEEQRASEIKQIRGDMVK-AEWGQQ 341 Query: 306 IRTYNFSQGR-ITDHRINLTLY 326 IR Y F + + D R Sbjct: 342 IRNYVFHPYKLVKDVRTGCETS 363 >gi|193078655|gb|ABO13705.2| peptide chain release factor 2 [Acinetobacter baumannii ATCC 17978] Length = 305 Score = 179 bits (454), Expect = 6e-43, Method: Composition-based stats. Identities = 96/295 (32%), Positives = 157/295 (53%), Gaps = 12/295 (4%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + E Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELSTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DI D+R DT RASG+GGQH+N TDSAVR+THIPTGI+V +++SQH NR A K Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINKTDSAVRLTHIPTGIVVACQNQRSQHANRDHAWKQ 235 Query: 273 LRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 LRA+LY++E ++ + K IG G +IR+Y RI D R + + Sbjct: 236 LRAKLYELEMQKRNEAAQALEDSKSDIGWG---SQIRSYVLDDSRIKDLRTGVEI 287 >gi|251771888|gb|EES52462.1| peptide chain release factor 2 [Leptospirillum ferrodiazotrophum] Length = 294 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 106/281 (37%), Positives = 152/281 (54%), Gaps = 8/281 (2%) Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D EI A + I +LE + D D +LEI G GG+E+ + Sbjct: 3 EDPEILGEAARILPLFVSRIDQLEL----EEILSDEYSDSPALLEIHPGAGGTESQDWAQ 58 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY R+A + ++ V+ ++ G K + G F ++ ESGVHR+ R+ Sbjct: 59 MLLRMYLRWAESKGYETAVIDLQPGEEAGIKSATLRVKGESAFGYLQAESGVHRLVRISP 118 Query: 191 TEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +A+ R HTS A+V V PE E+ V+I EDIRIDT RAS +GGQHVN T SAVR+THI Sbjct: 119 FDAAKRRHTSFASVFVYPEIEGEVTVEIRDEDIRIDTFRASSAGGQHVNKTSSAVRLTHI 178 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ-IGSGDRSERIR 307 PTGI++ + +E+SQ QNR A KVL+ARL+++ER++ E A + +IR Sbjct: 179 PTGIVISSQNERSQIQNREMAFKVLKARLFELERQKKKAELDAISGAESKKENAWGSQIR 238 Query: 308 TYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +Y + + DHR + +++ VL G ID I L A Sbjct: 239 SYVLQPYQIVKDHRTGIESSRVDEVLDGKIDLYIRGYLLAR 279 >gi|332520510|ref|ZP_08396972.1| peptide chain release factor 2 [Lacinutrix algicola 5H-3-7-4] gi|332043863|gb|EGI80058.1| peptide chain release factor 2 [Lacinutrix algicola 5H-3-7-4] Length = 317 Score = 179 bits (453), Expect = 6e-43, Method: Composition-based stats. Identities = 89/312 (28%), Positives = 155/312 (49%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + Y+ +DL + + + + + I +LE Sbjct: 1 MKTLRVKKKWVEDYNTANTLIEDLDVIYEFYKENEATLNDVTNRFTKAQTAIEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D S +L+I AG GG+E+ + L RMY YA +KV+ L+ + D Sbjct: 57 FKNMLSEEGDSLSAVLQITAGAGGTESCDWAQMLMRMYLMYAEKNNFKVKELNLQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I+++I Sbjct: 117 GIKTVTLEIEGDYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIEI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 DI I T R+SG+GGQ+VN ++ V++TH P+GI + S +SQH NR RA+++L+++ Sbjct: 177 NPADIEITTARSSGAGGQNVNKVETKVQLTHKPSGIQISCSETRSQHDNRSRALQMLKSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E ++ ++R K++I G +IR Y + + D R ++ V+ Sbjct: 237 LYEIELQKQLSQREDIEAAKMKIEWG---SQIRNYVMHPYKLVKDVRTGFESGNVDAVMD 293 Query: 334 GYIDDIINPLLT 345 G I + L Sbjct: 294 GDITPFLKSYLM 305 >gi|206890892|ref|YP_002247867.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742830|gb|ACI21887.1| peptide chain release factor 2 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 287 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 112/286 (39%), Positives = 163/286 (56%), Gaps = 12/286 (4%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + + + EV I+ +I LE LL K D + I+ I G GG+E Sbjct: 3 IAETEEDGYLLLKDLEEEVENIKSQIEHLE----IKLLLKGEHDKNNAIVSIHPGAGGTE 58 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY R+A + +KVE++ ++ G K++ T+ G+ + +K ESGVHR Sbjct: 59 SQDWAEILMRMYLRWAEKKGFKVEIVDLQLGEEAGIKDVTFTVEGQYAYGYLKCESGVHR 118 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + RV +A+ R HTS A V+VLPE + V+I EDIR+DT RASG+GGQHVN SA Sbjct: 119 LVRVSPFDANKRRHTSFAAVSVLPEIEDNIQVEIKDEDIRVDTFRASGAGGQHVNKVSSA 178 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSG 300 VRI HIPTGI+V +E+SQH+NR AMK+LR+++Y + +K ++ + K +I G Sbjct: 179 VRIVHIPTGIIVTCQTERSQHRNREIAMKILRSKIYALLQKEQEDKIKSITGNKKEIAWG 238 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y R I DHR ++ +Y +E VL G ID I L Sbjct: 239 ---SQIRSYILHPYRLIKDHRTDIEVYNVEDVLDGNIDIFIETYLK 281 >gi|323337560|gb|EGA78805.1| Mrf1p [Saccharomyces cerevisiae Vin13] gi|323348703|gb|EGA82945.1| Mrf1p [Saccharomyces cerevisiae Lalvin QA23] Length = 303 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 126/298 (42%), Positives = 174/298 (58%), Gaps = 11/298 (3%) Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD +R A+ E + + + + LLP DK +LE+R G GG EA +F Sbjct: 4 SDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKPSLLELRPGVGGIEAMIFTQ 63 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 +L MY YA RKWK ++S ++N+ G G + + +I G + R++FE+GVHRVQR+P Sbjct: 64 NLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEAGSYDRLRFEAGVHRVQRIP 123 Query: 190 ATEASGRVHTSAATVAVLPEA--------AEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 +TE GR HTS A V VLP+ + +IR+D MRASG GGQHVNTTD Sbjct: 124 STETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGGQHVNTTD 183 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVR+THIP+GI+V+ E+SQH+N+ +A +LRARL + ER + RK Q+ S Sbjct: 184 SAVRLTHIPSGIVVSMQDERSQHKNKAKAFTILRARLAEKERLEKEEKERKARKSQVSST 243 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSASE 357 +RS++IRTYNF Q RITDHR TL L VL G +D++I + + E Sbjct: 244 NRSDKIRTYNFPQNRITDHRCGFTLLDLPGVLSGERLDEVIEAMSKYDSTERAKELLE 301 >gi|212550868|ref|YP_002309185.1| peptide chain release factor 2 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549106|dbj|BAG83774.1| peptide chain release factor 2 [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 328 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 95/324 (29%), Positives = 160/324 (49%), Gaps = 19/324 (5%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 ++ AI I S + Y+ + ++L + + + I +LE Sbjct: 7 AKKQIKAIGIIKSWVDAYNVVQTAVEELQLAFDFNKEGVVSEEEVDKVYSDVVLLIEQLE 66 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + +D +++I AG GG+EA +V L+RMY R+ ++ +KV + + + Sbjct: 67 L----KNMLHSEEDHLGAVIKINAGAGGTEAQDWVAMLYRMYSRWCEVKMYKVNITNWLE 122 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEI 213 DD G K + + G F +K E+GVHR+ RV A G+ TS A+VAV+P I Sbjct: 123 GDDAGIKTVTLQVEGDDAFGYLKSENGVHRLVRVSPYNAQGKRMTSFASVAVVPLIDDTI 182 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP--------TGIMVTS-SEKSQHQ 264 ++DI L DI DT R+SG+GGQ+VN ++ VR+ + + I++ + +SQ Sbjct: 183 EIDINLGDITWDTFRSSGAGGQNVNKVETGVRLHYNYKDPNSGETSEIVIENTESRSQFG 242 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRIN 322 N+ A+++L++ LY +E KR + K +I G +IR+Y F R+ DHR Sbjct: 243 NKDNAIRLLKSHLYKLELKRRRQAFAKIEAHKKKIEWG---SQIRSYVFDDRRVKDHRTG 299 Query: 323 LTLYKLEYVLQGYIDDIINPLLTA 346 ++ V+ G +DD+I L A Sbjct: 300 WQTSNVQAVMDGDLDDLIKAYLMA 323 >gi|225012847|ref|ZP_03703280.1| peptide chain release factor 2 [Flavobacteria bacterium MS024-2A] gi|225002969|gb|EEG40946.1| peptide chain release factor 2 [Flavobacteria bacterium MS024-2A] Length = 314 Score = 179 bits (453), Expect = 7e-43, Method: Composition-based stats. Identities = 91/312 (29%), Positives = 156/312 (50%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + +S Y+ KQ DL ++ S + + + + LE Sbjct: 1 MKQLRTLKKWVSDYEIIKQGIDDLEVLMEFEKSGDAEAVEVNSQYESSLELLEALE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D DD S +L+I AG GG+E+ + L RMY + + +K++ L+ D Sbjct: 57 FRNMLSDEGDDLSAVLQITAGAGGTESCDWAEMLMRMYLMWGEKQGYKIKELNHQAGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-I 217 G K + + G F +K E+GVHR+ R+ +++ + HTS A+V V P + I Sbjct: 117 GIKTVTLELEGDFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIVI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 D +TMRASG+GGQ+VN ++AVR+ H PTGI++ S +SQ +N+ +AM++LR++ Sbjct: 177 SPSDYTWETMRASGAGGQNVNKVETAVRLRHHPTGIIIENSETRSQLENKNKAMQLLRSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E ++ + R K +I G +IR Y + + D R + ++ V+ Sbjct: 237 LYEIELQKKLSARDEIEASKKKIEWG---SQIRNYVMHPYKLVKDVRTQHEVTDVDAVMN 293 Query: 334 GYIDDIINPLLT 345 G ID + L Sbjct: 294 GQIDPFLKAYLM 305 >gi|157827015|ref|YP_001496079.1| peptide chain release factor 2 [Rickettsia bellii OSU 85-389] gi|157802319|gb|ABV79042.1| peptide chain release factor 2 [Rickettsia bellii OSU 85-389] Length = 285 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 96/287 (33%), Positives = 158/287 (55%), Gaps = 12/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D EI + ++ ++ + E L D +C LEI AG GG+E+ Sbjct: 1 MAEAENDLEIMQQVEKDLQSLSTIAAKFET----ECLFSGEADSNNCFLEINAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K E+++ + ++ G K I GR + +K E+GVHR+ Sbjct: 57 HDWASIMMRMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGRRAYGWLKTEAGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAV Sbjct: 117 VRISPFNAAGKRMTSFASSWVYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTG + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G Sbjct: 177 RITHIPTGTVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG- 235 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ ++ L + Sbjct: 236 --HQIRSYVLQPYQMVKDLRTDYETSDTKGVLDGDLEEFVSASLAMN 280 >gi|229496829|ref|ZP_04390538.1| peptide chain release factor 2, programmed [Porphyromonas endodontalis ATCC 35406] gi|229316240|gb|EEN82164.1| peptide chain release factor 2, programmed [Porphyromonas endodontalis ATCC 35406] Length = 318 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 83/325 (25%), Positives = 147/325 (45%), Gaps = 19/325 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + I I Y+ + +++ + + I +E Sbjct: 1 MRKVKEIRRWIEAYESVESAVEEVKLSFDFYKEGVAEEEEVDQAYQIALSLIENVELRNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + +D +L++ AG GG+E+ + L R+Y+R+A +KV + + D D+ Sbjct: 61 ----LRREEDRLGAVLKVNAGAGGTESQDWASMLVRLYQRWAENHDYKVTITNWQDGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-I 217 G K + I G + +K E+GVHR+ RV A G+ TS A+V V+P + + Sbjct: 117 GIKTVTMQIEGDLAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLVDDSIEIAV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 ++ DT R+SG+GGQ+VN ++ VR+ + ++ + +SQ NR Sbjct: 177 NPANLSWDTFRSSGAGGQNVNKVETGVRLHYQFKDPDTGEEREIVIENTESRSQLDNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 A+++LR++LYD+E ++ ++ K +I G +IR+Y F R+ DHR N Sbjct: 237 ALRLLRSQLYDIELEKRRAAQAEVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKM 351 + V+ G IDD I L + Sbjct: 294 NVNAVMDGDIDDFIKAYLMEFGGEK 318 >gi|163754877|ref|ZP_02161998.1| peptide chain release factor RF-2 [Kordia algicida OT-1] gi|161324944|gb|EDP96272.1| peptide chain release factor RF-2 [Kordia algicida OT-1] Length = 316 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 93/312 (29%), Positives = 158/312 (50%), Gaps = 12/312 (3%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + Y++ DL + + + + + +I +LE Sbjct: 1 MKKLRGEKKWVGDYNEVADLIGDLEVLYEFYKEGDASEEEVTAQFEKTKTKIEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + D D S +L++ AG GG+E+ + L RMY +A + +KV+ L+ + D Sbjct: 57 FRNMLSDEGDSMSAVLQVTAGAGGTESCDWASMLMRMYLMFAEKQGYKVKELNYQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI Sbjct: 117 GIKTVTLEIEGDYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDTIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 DI I T R+SG+GGQ+VN ++ V++TH P+GI + S +SQH NR RAM++L+++ Sbjct: 177 NPADIEITTARSSGAGGQNVNKVETKVQLTHKPSGIQISCSETRSQHDNRTRAMQMLKSQ 236 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQ 333 LY++E K+ R K++I G +IR Y + + D R ++ V+ Sbjct: 237 LYEIELKKQMEARDDIEAGKMKIEWG---SQIRNYVMHPYKLVKDVRTAHETGNVDAVMN 293 Query: 334 GYIDDIINPLLT 345 GYID+ + L Sbjct: 294 GYIDEFLKAYLM 305 >gi|16331171|ref|NP_441899.1| peptide chain release factor 2 [Synechocystis sp. PCC 6803] gi|1653665|dbj|BAA18577.1| peptide chain release factor [Synechocystis sp. PCC 6803] Length = 288 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 87/287 (30%), Positives = 140/287 (48%), Gaps = 10/287 (3%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ + + + + ++ R L D K L I AG GG+ Sbjct: 2 ELLELEDDQALLTEAETTLEQLQKELDRW-----ELQQLLSGPYDAKGATLTINAGAGGT 56 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R++ + +KV + S+ D+ G K + I GR + +K E G H Sbjct: 57 DAQDWAEMLLRMYTRWSEKQGYKVHLAEISEGDEAGLKSVTLEIEGRYAYGYLKSEKGTH 116 Query: 184 RVQRVPATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 R+ R+ A+G+ TS A V V+P I +DIP +D+ I T RA G GGQ+VN + Sbjct: 117 RLVRISPFNANGKRQTSFAGVEVMPLLGEEAISLDIPDKDLDISTSRAGGKGGQNVNKVE 176 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +AVRI H+PTG+ V + E+SQ QN+ +A+ +L+A+L V ++ A + R + Sbjct: 177 TAVRIVHLPTGLAVRCTQERSQLQNKEKALAILKAKLLIVLEEQRAQAIAEIRGDMVE-A 235 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR Y F + + D R N+ + V+ G + D I L Sbjct: 236 AWGTQIRNYVFHPYQLVKDLRTNVETTDVGGVMDGELSDFIEAYLRH 282 >gi|238650499|ref|YP_002916351.1| peptide chain release factor 2 [Rickettsia peacockii str. Rustic] gi|238624597|gb|ACR47303.1| peptide chain release factor 2 [Rickettsia peacockii str. Rustic] Length = 285 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 94/287 (32%), Positives = 156/287 (54%), Gaps = 12/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D E + ++ + + E L D +C LEI AG GG+E+ Sbjct: 1 MAEAENDLETLSQIEQDLKNLSIIAAKFET----ECLFSGEADGNNCFLEINAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ Sbjct: 57 HDWASIMMRMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTEAGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ V PE + + I +D+RIDT RASG+GGQHVNTTDSAV Sbjct: 117 VRISPFNAAGKRMTSFASSWVYPEIDDNIAIIIEDKDLRIDTFRASGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTG++ S++SQH+N+ +AMK+L+A+LY++E ++ + + K G Sbjct: 177 RITHIPTGMVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG- 235 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ ++ L + Sbjct: 236 --HQIRSYVLQPYQMVKDLRTDYETSDTKGVLDGDLEEFVSANLAMN 280 >gi|186681801|ref|YP_001864997.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102] gi|186464253|gb|ACC80054.1| peptide chain release factor 2 [Nostoc punctiforme PCC 73102] Length = 289 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 9/287 (3%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ +++ + L D + +L I AG GG++ Sbjct: 1 MLELETDEALLQEAESTITKLNRDLDQW-----ELQQLLSGPYDAEGAVLTISAGAGGTD 55 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L RMY R+ +KV + S+ D+ G K I+GR + ++ E G HR Sbjct: 56 AQDWAFMLMRMYTRWGEAHGYKVTLAEESEGDEAGIKSATLEITGRYAYGYLRSEMGTHR 115 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ A+G+ TS A V V+P+ ++IP +D+ I T R+ G GGQ+VN ++A Sbjct: 116 LVRISPFNANGKRQTSFAGVEVMPQIDNSVQLEIPDKDLEITTTRSGGKGGQNVNKVETA 175 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 VRI HIPTG+ V + E+SQ QN+ +A+ L+A+L + +++ A E + R + Sbjct: 176 VRIVHIPTGLAVRCTEERSQLQNKEKALNRLKAKLLVIAKEQRAQEIAEIRGDMVE-ASW 234 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 +IR Y F + + D R N + V+ G +D I L Sbjct: 235 GNQIRNYVFHPYQMVKDLRTNTETTAIGDVMNGELDPFIQAYLRQEN 281 >gi|160885362|ref|ZP_02066365.1| hypothetical protein BACOVA_03361 [Bacteroides ovatus ATCC 8483] gi|237716574|ref|ZP_04547055.1| peptide chain release factor RF-2 [Bacteroides sp. D1] gi|237720319|ref|ZP_04550800.1| peptide chain release factor RF-2 [Bacteroides sp. 2_2_4] gi|260172304|ref|ZP_05758716.1| peptide chain release factor RF-2 [Bacteroides sp. D2] gi|262405351|ref|ZP_06081901.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293370547|ref|ZP_06617099.1| putative peptide chain release factor 2 [Bacteroides ovatus SD CMC 3f] gi|294644599|ref|ZP_06722352.1| putative peptide chain release factor 2 [Bacteroides ovatus SD CC 2a] gi|294810341|ref|ZP_06769002.1| putative peptide chain release factor 2 [Bacteroides xylanisolvens SD CC 1b] gi|315920609|ref|ZP_07916849.1| conserved hypothetical protein [Bacteroides sp. D2] gi|156108984|gb|EDO10729.1| hypothetical protein BACOVA_03361 [Bacteroides ovatus ATCC 8483] gi|229442557|gb|EEO48348.1| peptide chain release factor RF-2 [Bacteroides sp. D1] gi|229450070|gb|EEO55861.1| peptide chain release factor RF-2 [Bacteroides sp. 2_2_4] gi|262356226|gb|EEZ05316.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292634281|gb|EFF52818.1| putative peptide chain release factor 2 [Bacteroides ovatus SD CMC 3f] gi|292640036|gb|EFF58301.1| putative peptide chain release factor 2 [Bacteroides ovatus SD CC 2a] gi|294442449|gb|EFG11255.1| putative peptide chain release factor 2 [Bacteroides xylanisolvens SD CC 1b] gi|295086344|emb|CBK67867.1| bacterial peptide chain release factor 2 (bRF-2) [Bacteroides xylanisolvens XB1A] gi|313694484|gb|EFS31319.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 319 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 19/320 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I Y++ K +L + + + + + LE + Sbjct: 1 MKLVKDLQKWIEGYNELKTLADELELAFDFYKEELVTEEDVDAAYAKASEAVEALELKNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 61 LRDEADQMD----CVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATIANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K I G + +K E+GVHR+ RV A G+ TS A+V V P I+V+I Sbjct: 117 GIKTCTINIEGDFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 +I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 LPANISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTA 346 + V+ G ID I L Sbjct: 294 DVNGVMDGKIDGFIKAYLME 313 >gi|325283910|ref|YP_004256451.1| Peptide chain release factor 2 [Deinococcus proteolyticus MRP] gi|324315719|gb|ADY26834.1| Peptide chain release factor 2 [Deinococcus proteolyticus MRP] Length = 365 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 98/335 (29%), Positives = 162/335 (48%), Gaps = 18/335 (5%) Query: 6 HKQICDLKN---------RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKK 56 +++ L+ R E++ +++ + + + + + Y K Sbjct: 5 QEKLASLREYLDIPGKERRLNELDHFLADPELWNDQNRARSITQEATSVRGVVEKYQGLK 64 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + L ++ S+ E L + + ++ + L D I+ + Sbjct: 65 SDLDGLAEMLELAESEDEREMLLEEQGGIEQRVDE-----LYRETLFTMKHADTPAIIRV 119 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 + G GG+EA + G L RMY R+A R ++V++L D GY+ I I G + M Sbjct: 120 KGGAGGTEAQDWAGMLARMYMRWAERRGYRVDILDEQPGDQAGYQSIEFIIRGEKAYGMM 179 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE--DIRIDTMRASGSGG 234 E GVHR+ RV +++ R TS A+V V+PE E ++DI + D+R D R+ GSGG Sbjct: 180 SAEHGVHRLVRVSPFDSNNRRQTSFASVDVVPEVPEEEIDIHIPDSDLRRDVFRSQGSGG 239 Query: 235 QHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 Q VNTTDSAVR+TH+PTGI + +SQ +N A+++L+ RLYD+E ++ E A R Sbjct: 240 QGVNTTDSAVRLTHLPTGIAVACQITRSQIKNHELALQILKQRLYDIEMRKREEEALAAR 299 Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 Q S + ++R+Y + I DHR L + Sbjct: 300 GQQ-SSVEWGSQMRSYVLDKQYIKDHRSGLMQHNP 333 >gi|325089543|gb|EGC42853.1| peptide chain release factor 1 [Ajellomyces capsulatus H88] Length = 438 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 41/384 (10%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + + + R++E+ K+ + ++ + + +++ + +L+ ++ D + Sbjct: 51 SIADEHSTLTSRLAETFDP----KIVKRAGELATTATTLKEWEKANESISELNNLLEDPS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + + + L + + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSELRSLALEDLRSAKASLAILSSNLKQTLIPRHPFADLPCLLELRPGAGGEEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGY-------KEIVATISGRGVFSRMKFESGVH 183 +L RMY + + R + +L + G E V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCSNRSLRATLLKKECENAGANGGSEDRLIEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMR 228 RVQRVPATE GR HTSA +V +LP D I +++ ++ MR Sbjct: 227 RVQRVPATENKGRTHTSAVSVVILPSFPSNIGEGDSELNFDDPNSDYYIDPQEVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ R+ Sbjct: 287 AGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 E R+ +G R ++IRTYNF Q R TDHR LTL+ L +++G ++ I++ Sbjct: 347 EMVKLRRGVMGGVAKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLGSIMEGGDGLEKIMDS 406 Query: 343 LLTA---------HQAKMIGSASE 357 + + + A E Sbjct: 407 VRGWLVDREVDDVFAEEQMKMAQE 430 >gi|240279273|gb|EER42778.1| peptide chain release factor 1 [Ajellomyces capsulatus H143] Length = 438 Score = 178 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 41/384 (10%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + + + R++E+ K+ + ++ + + +++ + +L+ ++ D + Sbjct: 51 SIADEHSTLTSRLAETFDP----KIVKRAGELATTATTLKEWEKANESISELNNLLEDPS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + + + L + + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSELRSLALEDLRSAKASLAILSSNLKQTLIPRHPFADLPCLLELRPGAGGEEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGY-------KEIVATISGRGVFSRMKFESGVH 183 +L RMY + + R + +L + G E V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCSNRSLRATLLKKECENAGANGGSEDRLIEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMR 228 RVQRVPATE GR HTSA +V +LP D I +++ ++ MR Sbjct: 227 RVQRVPATENKGRTHTSAVSVVILPSFPSNIGEGDSELNFDDPNSDYYIDPQEVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ R+ Sbjct: 287 AGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 E R+ +G R ++IRTYNF Q R TDHR LTL+ L +++G ++ I++ Sbjct: 347 EMVKLRRGVMGGVAKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLGSIMEGGDGLEKIMDS 406 Query: 343 LLTA---------HQAKMIGSASE 357 + + + A E Sbjct: 407 VRGWLVDREVDDVFAEEQMKMAQE 430 >gi|300087667|ref|YP_003758189.1| peptide chain release factor 2 [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527400|gb|ADJ25868.1| peptide chain release factor 2 [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 327 Score = 178 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 98/323 (30%), Positives = 161/323 (49%), Gaps = 11/323 (3%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + + ++ + + + ++ +L + D D E+ E A+ Sbjct: 6 GFWEDSDNSQKVMRRLTGLKKTVEQWRSLERRLNELAEL--DALGDPEMAQDVDAETEAV 63 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ LE + L D+++ +L I AG GG E+ + L MY ++ R + Sbjct: 64 SDELDRLE----FELSYSGEYDERNALLSIHAGAGGVESQDWAEMLLAMYVKWGERRDYD 119 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 VE+L +S D+ G K + A GR + ++ E GVHR+ R+ ++ HTS A V V Sbjct: 120 VEILETSAGDEAGIKSVTAEFRGRYAYGNLRSEHGVHRLIRLSPFDSDHARHTSFALVEV 179 Query: 207 LPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 +PE E +V+I +DI+++ RASG+GGQ+V SAVR+TH P+GI+V +E+SQHQ Sbjct: 180 MPEVEEDAEVEINPDDIKLEAFRASGAGGQNVQKVSSAVRLTHTPSGIVVTAQTERSQHQ 239 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINL 323 NR AM +LRARL + E++ + +I S + +IR+Y + DHR + Sbjct: 240 NREVAMSLLRARLLQRKIAEQEAEKARLKGERI-SNEWGSQIRSYVLHPYKMVKDHRTGM 298 Query: 324 TLYKLEYVL-QGYIDDIINPLLT 345 + VL +G I+ I L Sbjct: 299 ETGNTQAVLEEGNIEMFIEAYLK 321 >gi|91215788|ref|ZP_01252758.1| putative peptide chain release factor [Psychroflexus torquis ATCC 700755] gi|91186254|gb|EAS72627.1| putative peptide chain release factor [Psychroflexus torquis ATCC 700755] Length = 316 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 89/316 (28%), Positives = 158/316 (50%), Gaps = 8/316 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 AI+ + +D KQ +DL+ + D + + + I +LE Sbjct: 1 MQAINDEKQWVKSFDFAKQLVEDLNVLFEFFEEGDVSEDEIKEKYAEALELIEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D + IL+I AG GG+E+ + L RMY +A R +K+ L+ D Sbjct: 57 FKNMLSEESDPLTAILQITAGAGGTESCDWAEMLMRMYIMWADRRNFKIRELNHQGGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI Sbjct: 117 GIKTVTLEIEGEYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDTIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 +I+ + R+ G+GGQ+VN ++ +TH P+GI++ S +SQ +NR +AM++L+++ Sbjct: 177 NPSEIKWEFARSGGAGGQNVNKVETKAILTHYPSGIVIHNSETRSQLENRQKAMQMLKSQ 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 LY++E K+ RS + S + +IR Y + + D R ++ ++ G+ Sbjct: 237 LYEIELKKQQAARSEIE-SEKKSIEWGSQIRNYVMHPYKLVKDVRTGFESGNVDDIMNGH 295 Query: 336 IDDIINPLLTAHQAKM 351 ID + L + K Sbjct: 296 IDSFLKSYLMSSGQKK 311 >gi|157828246|ref|YP_001494488.1| peptide chain release factor 2 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165932947|ref|YP_001649736.1| peptide chain release factor 2 [Rickettsia rickettsii str. Iowa] gi|157800727|gb|ABV75980.1| peptide chain release factor 2 [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908034|gb|ABY72330.1| bacterial peptide chain release factor 2 (RF-2) [Rickettsia rickettsii str. Iowa] Length = 285 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 93/287 (32%), Positives = 155/287 (54%), Gaps = 12/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +D E + ++ + + E L D +C LEI AG GG+E+ Sbjct: 1 MAEAENDLETLSQIEQDLKNLSIIAAKFET----ECLFSGEADGNNCFLEINAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K E+++ + ++ G K I G+ + K E+GVHR+ Sbjct: 57 HDWASIMMRMYLRFAERLGFKTEIINMINGEEAGIKSCTIRIIGKRAYGWFKTEAGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ A+G+ TS A+ + PE + + I +D+RIDT RASG+GGQHVNTTDSAV Sbjct: 117 VRISPFNAAGKRMTSFASSWIYPEIDDNIAITIEDKDLRIDTFRASGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHIPTG + S++SQH+N+ +AMK+L+A+LY++E ++ + + K G Sbjct: 177 RITHIPTGTVTQCQSDRSQHKNKAQAMKMLQAKLYELEMQKRTDSVNEQNAAKTDNSWG- 235 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G +++ ++ L + Sbjct: 236 --HQIRSYVLQPYQMVKDLRTDYETSDTKGVLDGDLEEFVSANLAMN 280 >gi|218259544|ref|ZP_03475251.1| hypothetical protein PRABACTJOHN_00909 [Parabacteroides johnsonii DSM 18315] gi|218225027|gb|EEC97677.1| hypothetical protein PRABACTJOHN_00909 [Parabacteroides johnsonii DSM 18315] Length = 322 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 146/328 (44%), Gaps = 19/328 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y++ ++L + + + LE Sbjct: 1 MKKVKELKKWIELYNEVHAAAEELQLAYDYVKEGIVSEEEVDEAYGNAIQLVESLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D SC+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ Sbjct: 57 FRNMLRQEADQMSCVLKINSGAGGTESQDWASMLLRMYTRWAEANGYKISVANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K I G + +K E+GVHR+ RV A G+ TS A+V V P I+V I Sbjct: 117 GIKTATLNIEGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 DQAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + V+ G IDD I L A+ Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFGAEETAE 321 >gi|58579040|ref|YP_197252.1| peptide chain release factor 2 [Ehrlichia ruminantium str. Welgevonden] gi|58617098|ref|YP_196297.1| peptide chain release factor 2 [Ehrlichia ruminantium str. Gardel] gi|58416710|emb|CAI27823.1| Peptide chain release factor 2 (RF-2) [Ehrlichia ruminantium str. Gardel] gi|58417666|emb|CAI26870.1| Peptide chain release factor 2 (RF-2) [Ehrlichia ruminantium str. Welgevonden] Length = 251 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 90/250 (36%), Positives = 139/250 (55%), Gaps = 9/250 (3%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKWKVEVLSSSDNDDGGY 160 + D D C +EI++G GG+E+ + L RMY R+A +K +V+ D ++ G Sbjct: 1 MFSDEADQNDCFIEIQSGAGGTESNDWSNMLLRMYIRWAEIYHNFKTQVVYKLDGEETGV 60 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPL 219 K + + G + K ESG+HR+ R+ ++ + HT+ A+V V P D+ I Sbjct: 61 KSAIIKVIGYNAYGWSKTESGIHRLVRISPFNSNAKRHTTFASVLVSPVTNENFDIQIHD 120 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 +D+RIDT RASG+GGQHVN T+SAVRITHIP+GI+V + +SQHQN A +LR+RLY Sbjct: 121 KDLRIDTYRASGAGGQHVNKTESAVRITHIPSGIVVQCQNNRSQHQNLGEAYNLLRSRLY 180 Query: 279 DVERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 ++ + + + ++ IG G+ +IR+Y + + D R + VL G Sbjct: 181 QLKLQEKEKKMAQEHSQRCDIGWGN---QIRSYVMHPYQMVKDIRTGYETGNVNSVLDGD 237 Query: 336 IDDIINPLLT 345 +D I LT Sbjct: 238 LDAFIIATLT 247 >gi|188995108|ref|YP_001929360.1| putative peptide chain release factor RF-2 [Porphyromonas gingivalis ATCC 33277] gi|188594788|dbj|BAG33763.1| putative peptide chain release factor RF-2 [Porphyromonas gingivalis ATCC 33277] Length = 319 Score = 177 bits (449), Expect = 2e-42, Method: Composition-based stats. Identities = 87/327 (26%), Positives = 153/327 (46%), Gaps = 22/327 (6%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + I D +E + + + S E D A + L Sbjct: 1 MRKVKELKSWIGYYDAIDTATEEVKLAYEYCKEGISTEEEVDEAYAHAIR-------LIE 53 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 E+ + + +D +L++ AG GG+E+ + L RMY+R+A + ++V + + D Sbjct: 54 EVELKNMLRSEEDHFGAVLKVNAGAGGTESQDWASMLVRMYQRWADKQGYQVTITNWQDG 113 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEID 214 D+ G K + + G + +K E+GVHR+ RV A G+ TS A+V V+P I+ Sbjct: 114 DEAGIKTVTMQVEGNLAYGFLKSENGVHRLVRVSPYNAQGKRMTSFASVFVVPLVDDSIE 173 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQN 265 ++I I DT R+ G+GGQ+VN ++ VR+ + ++ + ++Q+ N Sbjct: 174 IEINAAGISWDTFRSGGAGGQNVNKVETGVRLHYKYKDPETGEDKEIVIENTESRTQYDN 233 Query: 266 RLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINL 323 R AM++LR++LY++E +R + K +I G +IR+Y F R+ DHR N Sbjct: 234 RENAMRLLRSQLYEMELQRRRAAEAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNY 290 Query: 324 TLYKLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G ID+ I L + Sbjct: 291 QTSNVNAVMDGDIDEFIKAYLMEFAGE 317 >gi|157825493|ref|YP_001493213.1| peptide chain release factor 2 [Rickettsia akari str. Hartford] gi|157799451|gb|ABV74705.1| peptide chain release factor 2 [Rickettsia akari str. Hartford] Length = 285 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 91/258 (35%), Positives = 145/258 (56%), Gaps = 4/258 (1%) Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSS 152 L + L D +C LEI AG GG+E+ + + RMY R+A +K E+++ Sbjct: 24 LAAKFETECLFSGEADGNNCFLEINAGAGGTESHDWASIMMRMYLRFAERLGFKTEIINM 83 Query: 153 SDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAA 211 + ++ G K I G+ + K E+GVHR+ R+ A+G+ TS A+ V P Sbjct: 84 LNGEEVGIKSCTIRIIGKRAYGWFKTEAGVHRLVRISPFNAAGKRMTSFASSWVYPAIDD 143 Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAM 270 I + I +D+RIDT RASG+GGQHVNTTDSAVRITHIPTG + S++SQH+N+ +AM Sbjct: 144 NIAITIEDKDLRIDTFRASGAGGQHVNTTDSAVRITHIPTGTVTQCQSDRSQHKNKAQAM 203 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 K+L+A+LY++E ++ + + + S +IR+Y + + D R + + Sbjct: 204 KMLQAKLYELEMQKRTDSVNEQNAAKTDS-SWGYQIRSYILHPYQMVKDLRTDYETSDTK 262 Query: 330 YVLQGYIDDIINPLLTAH 347 VL G +++ ++ L + Sbjct: 263 GVLDGDLEEFVSANLAMN 280 >gi|149371331|ref|ZP_01890817.1| peptide chain release factor RF-2 [unidentified eubacterium SCB49] gi|149355469|gb|EDM44028.1| peptide chain release factor RF-2 [unidentified eubacterium SCB49] Length = 317 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 8/311 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + ++ Y++ +D + + + + I LE Sbjct: 1 MKVLRSKKKWVTDYEEATTLFEDAEVIYEFFKEGEAPAENVEERYKKAFEAIEALE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D S +L+I AG GG+E+ + L RMY +A +KV+ L+ D Sbjct: 57 FRNMLSEEGDAMSAVLQITAGAGGTESCDWANMLMRMYLMWAERNGFKVKELNYQAGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G F +K E+GVHR+ R+ +++ + HTS A+V V P I++DI Sbjct: 117 GIKTVTLEIDGEYAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDTIEIDI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRAR 276 DI D R+ G+GGQ+VN ++ +TH P+GI++ S +SQ +NR +AM++L+++ Sbjct: 177 NPADIGWDFARSGGAGGQNVNKVETKAILTHKPSGIVIHNSETRSQLENRQKAMQMLKSQ 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 LY++E ++ +R+ ++ + +IR Y + + D R N + +L G+ Sbjct: 237 LYEIELRKQQAQRAEIEGNKMA-IEWGSQIRNYVLQPYKLVKDVRNNHESTNPDAILDGH 295 Query: 336 IDDIINPLLTA 346 ID+ + L Sbjct: 296 IDEFLKAYLMM 306 >gi|145220477|ref|YP_001131186.1| peptide chain release factor 2 [Prosthecochloris vibrioformis DSM 265] gi|145206641|gb|ABP37684.1| bacterial peptide chain release factor 2 (bRF-2) [Chlorobium phaeovibrioides DSM 265] Length = 300 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 99/301 (32%), Positives = 154/301 (51%), Gaps = 9/301 (2%) Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 Y + + + D + E+ A I + I + + DD+ Sbjct: 2 EGYRKMASDATSCREELTLA--DELGEESYAEELDASIAAIEAEMDAIEFRNMLSGKDDE 59 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 + I+ I AG GG+EA + L+RMY R+A + +K+ D G K I G Sbjct: 60 GNAIITIHAGAGGTEAQDWAEMLYRMYMRWAERKGFKIYTDDYQAGDGAGIKTATLEIQG 119 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMR 228 + +K E+GVHR+ RV +++ R HTS A+V PEA ++++ ED+ + T R Sbjct: 120 PYAYGYLKAENGVHRLVRVSPFDSNARRHTSFASVYTYPEAPPDVEIEVRKEDLELSTFR 179 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 + G GGQ+VN ++AVRI H+P+GI+V E+SQ QNR RAMK+L A+LY +R+ Sbjct: 180 SGGKGGQNVNKVETAVRIKHVPSGIVVGCQQERSQFQNRERAMKMLMAQLYQRQREEEDA 239 Query: 288 ERSA--NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 ++ +K +I G +IR+Y RI DHR N + +E VL G IDD ++ L+ Sbjct: 240 KKREVEGKKKKIEWG---SQIRSYVLDDRRIKDHRTNHERFDIETVLDGDIDDFMHAYLS 296 Query: 346 A 346 Sbjct: 297 E 297 >gi|225559538|gb|EEH07820.1| peptide chain release factor 1 [Ajellomyces capsulatus G186AR] Length = 438 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 115/384 (29%), Positives = 193/384 (50%), Gaps = 41/384 (10%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + + + R++E+ + ++ + + +++ + +L+ ++ D + Sbjct: 51 SIADEHSTLTSRLAETFDPKTAKRAG----ELATTATTLKEWEKANESISELNNLLEDPS 106 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + + + L + + L+P+ D C+LE+R G GG EA +F Sbjct: 107 TDSELRSLALEDLRSAKASLTILSSNLKQTLIPRHPFADLPCLLELRPGAGGEEAGIFAN 166 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGY-------KEIVATISGRGVFSRMKFESGVH 183 +L RMY + + R + +L + G E V I G + ++ E+GVH Sbjct: 167 ELLRMYTMFCSNRSLRTTLLKKECENAGANGGSEDRLIEAVMEIETPGSYETLRTEAGVH 226 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEA---------------AEIDVDIPLEDIRIDTMR 228 RVQRVP TE GR HTSA +V +LP D I +++ ++ MR Sbjct: 227 RVQRVPTTENKGRTHTSAVSVVILPSFSSNIGEGDSELNFDDPNSDYYIDPQEVNVEKMR 286 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ R+ Sbjct: 287 AGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARIAQQRREAREE 346 Query: 288 ERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINP 342 E R+ +G R ++IRTYNF Q R TDHR LTL+ L +++G ++ I++ Sbjct: 347 EMVKLRRGVMGGVAKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLGSIMEGGDGLEKIMDS 406 Query: 343 LLTA---------HQAKMIGSASE 357 + + + A E Sbjct: 407 VRGWLVDREVDDVFAEEQMKMAQE 430 >gi|156546340|ref|XP_001606563.1| PREDICTED: similar to ENSANGP00000017484 [Nasonia vitripennis] Length = 402 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 125/318 (39%), Positives = 184/318 (57%), Gaps = 16/318 (5%) Query: 41 AISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYL 100 + I I + +E++D+ + + +E R + L Sbjct: 90 ERTKIYENIKNLAELVEEDKDMKKLAEEEKLSNEAR------------LKEIDNELFSAL 137 Query: 101 LLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY 160 D+ ILEI AG GG EA LFV +L MY ++ + + +++ ++ GG Sbjct: 138 AQSLSGDNFDEIILEITAGVGGQEAMLFVKNLLEMYIKHLSYLGYSYDIIEMDESPQGGC 197 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE 220 + ISG+ F +++ E+GVHRVQRVPATE SGR+HTS +V VLP+ +I V+I + Sbjct: 198 RHASIMISGKESFEKLRHEAGVHRVQRVPATEKSGRIHTSVVSVGVLPQPNDIQVEIHAK 257 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RIDTMRASG+GGQHVNTT+SAVR+TH+PTG+ V +++SQ +NR AM LRA++Y+ Sbjct: 258 DLRIDTMRASGAGGQHVNTTNSAVRVTHLPTGMSVECQTDRSQIRNRELAMAKLRAKMYE 317 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR-INLTLYKLEYVLQGY--I 336 + R S RK Q+G G+R E+IRTYNF+Q R+TDHR N TL+ L+ L+G + Sbjct: 318 QKLARQLRSASEMRKQQMGMGERHEKIRTYNFNQDRVTDHRLSNGTLHNLKGFLEGGMAL 377 Query: 337 DDIINPLLTAHQAKMIGS 354 D + L Q K++ Sbjct: 378 DGLHERLSKDMQHKLLME 395 >gi|331242267|ref|XP_003333780.1| peptide chain release factor 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309312770|gb|EFP89361.1| peptide chain release factor 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 416 Score = 177 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 124/337 (36%), Positives = 190/337 (56%), Gaps = 16/337 (4%) Query: 34 KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 ++ ++ AI P+ + YD+ +L T+ + E+ +R + Sbjct: 69 EIIKKQKAIQPLKLAVEKYDELSSLACELKTISEKDPDEDMREIAITELKTIEERALRTI 128 Query: 94 ENEINYLLL---PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL 150 E L+ P+ D+S ++EI+ G GG EA+ F L +Y R A ++W ++ + Sbjct: 129 EQVKQGLIQVASPRPESYDQSALVEIKPGVGGVEASHFATLLMNLYTRLATRKRWHIKPV 188 Query: 151 SSSDNDDG----GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 S G G +E V I G+ V+ +++E+GVHRVQRVP + + +HTS A+V V Sbjct: 189 SVEYMTSGQGQDGLREAVLEIEGQAVYGSLRWEAGVHRVQRVPVMQNTASIHTSTASVIV 248 Query: 207 LP------EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSE 259 LP E E + +DI+++TMR+ G+GGQHVN T+SAVR+THIPTG +V+ Sbjct: 249 LPLNPSGSEENESEDLFDEKDIKLETMRSQGAGGQHVNKTESAVRLTHIPTGTVVSMQDS 308 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQHQNR RA +LRARL D++ ++ E +R Q+ + +RSE+IRTYNF QGR+TDH Sbjct: 309 RSQHQNRERAYMILRARLLDLKLRQKVIENRESRLSQVKNTNRSEKIRTYNFQQGRVTDH 368 Query: 320 RINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 RI LTL +L ++ G +D I + L +A I S Sbjct: 369 RIGLTLPRLNDIIDGGETLDIIWDGLEKDEEANTIQS 405 >gi|302901381|ref|XP_003048424.1| hypothetical protein NECHADRAFT_84223 [Nectria haematococca mpVI 77-13-4] gi|256729357|gb|EEU42711.1| hypothetical protein NECHADRAFT_84223 [Nectria haematococca mpVI 77-13-4] Length = 412 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 111/367 (30%), Positives = 187/367 (50%), Gaps = 37/367 (10%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + + + E++ ++ S ++ +S + + +++ + +L ++ D Sbjct: 29 QSMTSEYDELQKTLNASFDSTKAKRVG----ELSRVAEALKAWEKSQASVAELTAMLNDP 84 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D+++ +A+ E+ + ++ L ++ L P+ D C++E R G GG E F Sbjct: 85 EQDADLVSIARDELESETGKLESLARNLSASLTPRHPFADFPCMIEFRPGPGGLEGRYFT 144 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRMKFE 179 LF+MY+ + ++ V+ D G +E V I +G F + E Sbjct: 145 DTLFKMYKALCMRKGYRHSVMKYEFADTAGDSSSSAGENPLQEAVLEIQDQGAFDLFRSE 204 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLPEA------------AEIDVDIPLEDIRIDTM 227 +G+HRVQR+P+TE+ GRVHTSA V VLP E D + +D++I+ M Sbjct: 205 AGMHRVQRIPSTESKGRVHTSAVAVWVLPSFPESGAGSVDFEDPESDFYVNPQDVKIEAM 264 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVN T+SA+R+TH+PTG V+ +SQ +NR A K++RAR+ D R+ Sbjct: 265 RARGAGGQHVNKTESAIRMTHLPTGTTVSMQDHRSQQRNRDEAWKMMRARIADQRREARE 324 Query: 287 NERSANR-----KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDI 339 E + R K QI R ++IRTYN++Q R TDHR + ++ L VL+G +D I Sbjct: 325 EEAARLRNSVLSKTQI---TRGDKIRTYNYNQDRCTDHRAGIDVHDLPNVLEGGEKLDRI 381 Query: 340 INPLLTA 346 ++ Sbjct: 382 MDGAKDW 388 >gi|297291498|ref|XP_001095577.2| PREDICTED: mitochondrial translational release factor 1-like isoform 2 [Macaca mulatta] Length = 326 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 106/208 (50%), Positives = 140/208 (67%), Gaps = 3/208 (1%) Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L + GG + A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ Sbjct: 113 LEVTAGVGGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQ 172 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLR 268 EI++ I +D+RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +NR Sbjct: 173 PTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNREL 232 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 AMK LRA+LY + ++ AN+ RK+QIGS RSE+IRTYNF Q R+TDHRI+ TL+ L Sbjct: 233 AMKKLRAKLYSMHLEKEANKTQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRISKTLHDL 292 Query: 329 EYVLQGY--IDDIINPLLTAHQAKMIGS 354 E +QG +D+++ L + + Sbjct: 293 ETFMQGDYLLDELVQSLKEYADYESLVE 320 >gi|294994856|ref|ZP_06800547.1| peptide chain release factor 1 [Mycobacterium tuberculosis 210] Length = 206 Score = 176 bits (447), Expect = 3e-42, Method: Composition-based stats. Identities = 108/205 (52%), Positives = 136/205 (66%), Gaps = 7/205 (3%) Query: 157 DGGYKEIVATISG-----RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 GGYK+ I+ GV+SRMKFE GVHRVQRVP TE+ GRVHTSAA V V PE Sbjct: 1 MGGYKDATLAIASKADTPDGVWSRMKFEGGVHRVQRVPVTESQGRVHTSAAGVLVYPEPE 60 Query: 212 EI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 E+ V I D+RID R+SG GGQ VNTTDSAVRITH+PTGI+V +E+SQ QN+ RA Sbjct: 61 EVGQVQIDESDLRIDVFRSSGKGGQGVNTTDSAVRITHLPTGIVVTCQNERSQLQNKTRA 120 Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 ++VL ARL + ++ + SA+R QI + DRSERIRTYNF + RITDHRI + L+ Sbjct: 121 LQVLAARLQAMAEEQALADASADRASQIRTVDRSERIRTYNFPENRITDHRIGYKSHNLD 180 Query: 330 YVLQGYIDDIINPLLTAHQAKMIGS 354 VL G +D + + L A + + Sbjct: 181 QVLDGDLDALFDALSAADKQSRLRQ 205 >gi|332213669|ref|XP_003255947.1| PREDICTED: peptide chain release factor 1-like, mitochondrial isoform 3 [Nomascus leucogenys] Length = 344 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 130/314 (41%), Positives = 185/314 (58%), Gaps = 41/314 (13%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 264 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 265 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINRTLHDLETFMQGDYLLDELV 324 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 325 QSLKEYADYESLVE 338 >gi|154490399|ref|ZP_02030660.1| hypothetical protein PARMER_00632 [Parabacteroides merdae ATCC 43184] gi|154089010|gb|EDN88054.1| hypothetical protein PARMER_00632 [Parabacteroides merdae ATCC 43184] Length = 322 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 91/328 (27%), Positives = 146/328 (44%), Gaps = 19/328 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y++ ++L + + + LE Sbjct: 1 MKKVKELKKWIELYNEVHAAAEELQLAYDYVKEGIVSEEEVDEAYGNAIQLVESLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D SC+L+I +G GG+E+ + L RMY R+A +K+ V + + D+ Sbjct: 57 FRNMLRQEADQMSCVLKINSGAGGTESQDWASMLLRMYTRWAEANGYKISVANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K I G + +K E+GVHR+ RV A G+ TS A+V V P I+V I Sbjct: 117 GIKTATLNIEGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 DQAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMEEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + V+ G IDD I L A+ Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFGAEESAE 321 >gi|255023944|ref|ZP_05295930.1| peptide chain release factor 1 [Listeria monocytogenes FSL J1-208] Length = 184 Score = 176 bits (447), Expect = 4e-42, Method: Composition-based stats. Identities = 98/182 (53%), Positives = 137/182 (75%), Gaps = 1/182 (0%) Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 K+ +G HRVQRVP TE+ GR+HTS ATVA+LPEA E+++++ +DIR DT ++G+GGQ Sbjct: 1 KYXNGAHRVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDKDIRTDTFASTGAGGQS 60 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTT SAVR+THIPTGI+V+ E+SQ +N+ +AMKVLRAR+YD + E ANRK Sbjct: 61 VNTTMSAVRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARVYDKFEREAREEYDANRKS 120 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 +G+GDRSERIRTYN+ Q R+TDHRI LT+ KL+ +++G +D+II+ L+ Q + Sbjct: 121 AVGTGDRSERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGKLDEIIDALILEDQTSKLEHL 180 Query: 356 SE 357 ++ Sbjct: 181 ND 182 >gi|194387338|dbj|BAG60033.1| unnamed protein product [Homo sapiens] Length = 344 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 130/314 (41%), Positives = 185/314 (58%), Gaps = 41/314 (13%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 264 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 265 EEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 324 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 325 QSLKEYADYESLVE 338 >gi|310796023|gb|EFQ31484.1| RF-1 domain-containing protein [Glomerella graminicola M1.001] Length = 397 Score = 176 bits (446), Expect = 4e-42, Method: Composition-based stats. Identities = 118/378 (31%), Positives = 194/378 (51%), Gaps = 39/378 (10%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + + + K +S +++ + ++Q +L+ ++G + Sbjct: 18 IATEHEALARSLESDYD----TKTARRLGELSSVVTALREWEQATSSVAELNGLLG--SK 71 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D E+RD+A E+ + ++ + ++ L PKD C+LEIR G GG E F Sbjct: 72 DKELRDMAAEELESTRDQLAAVSRRLSASLTPKDPYAHMPCLLEIRPGPGGLEGRFFADT 131 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRMKFESG 181 LFRMY++Y + + ++ EV+ D G +E + I G + + E+G Sbjct: 132 LFRMYKQYCSRKGYRAEVIKYETADAAGDQSTAAGESPLQEAIVEIHDPGAYDLFRGEAG 191 Query: 182 VHRVQRVPATEASGRVHTSAATVAVL--------------PEAAEIDVDIPLEDIRIDTM 227 +HRVQR+PATE +GRVHTSA V VL + E D I +++I+TM Sbjct: 192 MHRVQRIPATEKNGRVHTSAVAVWVLPSFQESGGEGGAQDMDNPESDFYIDPAEVKIETM 251 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVN T+SA+R+TH+PTG +V+ +SQ +NR A K++R+R+ + R+ Sbjct: 252 RARGAGGQHVNKTESAIRMTHVPTGTVVSMQDSRSQSRNREDAWKLMRSRVALIRREARE 311 Query: 287 NERSANRKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINP 342 + R + RS++IRTYN++Q R+TDHR L +Y L+ V+ G +D I++ Sbjct: 312 EAAAQLRDSVLSQHRISRSDKIRTYNYNQDRVTDHRAGLDVYNLDDVINGGESLDKIVDA 371 Query: 343 ----LLTAHQAKMIGSAS 356 L++A A M+ Sbjct: 372 VRDWLVSADIAAMMADEE 389 >gi|114609865|ref|XP_001140693.1| PREDICTED: mitochondrial translational release factor 1-like isoform 4 [Pan troglodytes] Length = 344 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 131/314 (41%), Positives = 185/314 (58%), Gaps = 41/314 (13%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIRLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 264 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE +QG +D+++ Sbjct: 265 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMQGDYLLDELV 324 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 325 QSLKEYADYESLVE 338 >gi|305667119|ref|YP_003863406.1| peptide chain release factor 2 [Maribacter sp. HTCC2170] gi|88708053|gb|EAR00291.1| peptide chain release factor 2 [Maribacter sp. HTCC2170] Length = 313 Score = 176 bits (446), Expect = 5e-42, Method: Composition-based stats. Identities = 83/311 (26%), Positives = 151/311 (48%), Gaps = 8/311 (2%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 I + ++ + DL ++ + + I +LE Sbjct: 1 MKFIQSKKHWVDDFNAAQTLVGDLEVLMEFLKEGEVSENEVNSQYSKATGLIEKLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + + D+ + +L+I AG GG+E+ + L RMY ++ +KV+ L+ + D Sbjct: 57 FKNMLSEEGDELTAVLQITAGAGGTESCDWAAMLMRMYMMWSQKNGFKVKELNYQEGDVA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + + G F +K E+GVHR+ R+ +++ + HTS A+V V P I++D+ Sbjct: 117 GIKTVTLEVEGEFAFGWLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLVDDSIEIDV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 DI I T R+SG+GGQ+VN ++ V++ H P+GI + S +SQH NR AMK+L+++ Sbjct: 177 NPADIEITTARSSGAGGQNVNKVETKVQLVHKPSGIQIQCSDSRSQHDNRATAMKMLKSQ 236 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGY 335 LY++E ++ R ++ + +IR Y + + D R + ++ V+ G Sbjct: 237 LYEIELRKKMEAREEIESSKMK-IEWGSQIRNYVMHPYKLVKDVRTSEETGNVDAVMDGN 295 Query: 336 IDDIINPLLTA 346 ID + L Sbjct: 296 IDQFLKAFLMM 306 >gi|226329845|ref|ZP_03805363.1| hypothetical protein PROPEN_03757 [Proteus penneri ATCC 35198] gi|225200640|gb|EEG82994.1| hypothetical protein PROPEN_03757 [Proteus penneri ATCC 35198] Length = 274 Score = 176 bits (445), Expect = 5e-42, Method: Composition-based stats. Identities = 124/265 (46%), Positives = 183/265 (69%), Gaps = 9/265 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L+ R+ EI+ +SE+ + + + L++EY+ ++ + + S + + + + + Sbjct: 8 KLEALQERYEEIQALLSEADVIASQERFRALSKEYSQLTDVTACFSQWRKVQDDIEAAEM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E++++AQ E+ + +LE ++ LLLPKD DD+ +C LEIRAGTGG E Sbjct: 68 ML----DDPEMKEMAQEELKEAQALNDDLEQQLQVLLLPKDPDDEFNCFLEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W++EV+++++ + GGYKE++A + G G + +KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRIEVMNANEGEHGGYKEVIAKVVGDGAYGVLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVP TE+ GR+HTSA TVAVL E E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPETESQGRIHTSACTVAVLAEVPEAELPDISPSDLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRL 267 +RITHIPTGI+V E+SQH+ Sbjct: 244 IRITHIPTGIVVECQDERSQHKKTK 268 >gi|317061399|ref|ZP_07925884.1| peptide chain release factor 2 [Fusobacterium sp. D12] gi|313687075|gb|EFS23910.1| peptide chain release factor 2 [Fusobacterium sp. D12] Length = 331 Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 108/341 (31%), Positives = 174/341 (51%), Gaps = 21/341 (6%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-----IGDHNSDSE 74 E R E + + A++ + ++ + +E ++ + GD +S E Sbjct: 2 EARTMEEGFWNDKKSSSALIKAMNEEKALLASFQSLVEEIEEEEVLIEFVEAGDESSQVE 61 Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + + + + +E L L D + I+ I +G GG+EA + L+R Sbjct: 62 LEEKHKQLLKDMESFSTGL--------LLDGEYDGNNAIVTIHSGAGGTEACDWADMLYR 113 Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+ +K+K+E + D G K I +SG + +K E G+HR+ R+ +A+ Sbjct: 114 MYTRWCHDKKYKIEEMDFMPGDSVGIKSITFLVSGYHAYGYLKCEKGIHRLVRISPFDAN 173 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS A+V V+PE E DIRIDT RASG+GGQH+N TDSAVRITH PTGI Sbjct: 174 KKRHTSFASVEVVPEVDESVEVEVEAADIRIDTYRASGAGGQHINMTDSAVRITHFPTGI 233 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYN 310 +V E+SQ NR AMK+L+++L ++E K+ E + +IG G +IR+Y Sbjct: 234 VVTCQKERSQLNNRETAMKMLQSKLLELELKKKEEEMKKLQGEQSEIGWG---SQIRSYV 290 Query: 311 FSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 F + DHR + + ++ V+ G +D+ +N L ++ K Sbjct: 291 FQPYTMVKDHRTGVEVGNIKAVMDGDLDEFMNGYLRWNKRK 331 >gi|167752837|ref|ZP_02424964.1| hypothetical protein ALIPUT_01098 [Alistipes putredinis DSM 17216] gi|167659906|gb|EDS04036.1| hypothetical protein ALIPUT_01098 [Alistipes putredinis DSM 17216] Length = 315 Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 142/314 (45%), Gaps = 19/314 (6%) Query: 45 IISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 I + + YD +E +DL + + I ELE + + Sbjct: 4 IKAWVEEYDAVVKEVEDLRLMPEFVKEGVVTEQELDEQYARAMHRIEELEL----RNMLR 59 Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 +D I++I +G GG+EA + G L RMY R+ +KV+VL ++ G K Sbjct: 60 RDEDRMGAIMDINSGAGGTEALDWAGMLLRMYTRWGEAHGYKVKVLDYQAGEEVGVKSCT 119 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIR 223 G + +K E+GVHR+ R+ A+ + T+ A+V V P + DI Sbjct: 120 LEFEGEYAYGYLKSENGVHRMVRLSPFNANNKRQTTFASVFVSPAIDDTIEITVNPADIE 179 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLRAMKVLR 274 DT R+SG+GGQ+VN ++AVR+ + ++ +SQ NR AM++L+ Sbjct: 180 WDTFRSSGAGGQNVNKVETAVRLRYHGKDADTGEPIEYLIENMETRSQLMNRENAMRILK 239 Query: 275 ARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 ++LY E + + A K +I G +IR+Y F R+ DHR + +E V+ Sbjct: 240 SKLYQRELDKRMATQQALEATKKRIEWG---SQIRSYVFDDRRVKDHRTGVQTSDVEGVM 296 Query: 333 QGYIDDIINPLLTA 346 G +D+ I L Sbjct: 297 DGDLDEFIKAYLME 310 >gi|255641350|gb|ACU20952.1| unknown [Glycine max] Length = 230 Score = 176 bits (445), Expect = 6e-42, Method: Composition-based stats. Identities = 105/226 (46%), Positives = 150/226 (66%), Gaps = 6/226 (2%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MYERY+ WK ++SSS + GGYK V I G V+S++K+ESGVHRVQRVP TE Sbjct: 1 MYERYSERNSWKYSLVSSSAAEKGGYKTYVMEIKGNRVYSKLKYESGVHRVQRVPLTETQ 60 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI- 253 GRVHTS ATVA++PEA E++V I +DI + T R+ G+GGQ+VN ++A+ + H PTGI Sbjct: 61 GRVHTSTATVAIMPEADEVEVVIDPKDIELTTARSGGAGGQNVNKVETAIDLFHKPTGIR 120 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 + + E++Q +NR RA ++LRA+LY+++ + RKLQ+G+G RSE+IRTYN+ Sbjct: 121 IFCTEERTQLKNRNRAFQLLRAKLYEIKVREQQESLRNQRKLQVGTGARSEKIRTYNYKD 180 Query: 314 GRITDHR--INLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 R+TDHR IN L L G I+D + +T Q +++ +E Sbjct: 181 NRVTDHRLKINYE---LTSFLDGDIEDAVQSCVTMEQKELLEELAE 223 >gi|150009345|ref|YP_001304088.1| peptide chain release factor RF-2 [Parabacteroides distasonis ATCC 8503] gi|262384740|ref|ZP_06077873.1| peptide chain release factor RF-2 [Bacteroides sp. 2_1_33B] gi|149937769|gb|ABR44466.1| peptide chain release factor RF-2 [Parabacteroides distasonis ATCC 8503] gi|262293721|gb|EEY81656.1| peptide chain release factor RF-2 [Bacteroides sp. 2_1_33B] Length = 322 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 19/328 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y + ++L + + + +LE Sbjct: 1 MKKVKELKKWIELYGEVHAAAEELELAYEYVKEEIITEEEVDAAYKKALHLLEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D D SC+L+I +G GG+E+ + L RMY+R+A +K+ + + + D+ Sbjct: 57 FRNMLRDEADQMSCVLKINSGAGGTESQDWASMLMRMYQRWAENNGYKISIANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + Sbjct: 117 GIKTVTFNIEGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 ETAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + V+ G IDD I L + Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFAGEESAE 321 >gi|323249834|gb|EGA33733.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 281 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 136/277 (49%), Positives = 195/277 (70%), Gaps = 9/277 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAESRRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 +RITH+PTGI+V E+SQH+N+ +A+ VL AR++ Sbjct: 244 IRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHA 280 >gi|6469929|gb|AAF13494.1|AF130466_1 peptide chain release factor 2 [Campylobacter jejuni] Length = 269 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 94/256 (36%), Positives = 155/256 (60%), Gaps = 6/256 (2%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 +L +D K+ I+ I G GG+E+ + L+RMY R+ +KVE L + ++ Sbjct: 17 EISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGFKVETLDFQEGEE 76 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVD 216 G K++ + G + +K E+G+HR+ R +++GR HTS ++V V PE +I+++ Sbjct: 77 AGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSSVMVSPELDDDIEIE 136 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I +DIRID RASG+GGQHVN T+SAVRITH PTGI+V +++SQH+N+ A K+L++ Sbjct: 137 IEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQNDRSQHKNKATAFKMLKS 196 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKLEYVLQG 334 RLY++E + + + K +IG G +IR+Y F ++ D+R +++ +L G Sbjct: 197 RLYELELMKQQDSANTGEKSEIGWG---HQIRSYVLFPYQQVKDNRSGEAFSQVDNILDG 253 Query: 335 YIDDIINPLLTAHQAK 350 I +I +L A +A+ Sbjct: 254 DIKKMIEGVLIALKAE 269 >gi|302672683|ref|XP_003026029.1| hypothetical protein SCHCODRAFT_27452 [Schizophyllum commune H4-8] gi|300099709|gb|EFI91126.1| hypothetical protein SCHCODRAFT_27452 [Schizophyllum commune H4-8] Length = 251 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 114/249 (45%), Positives = 158/249 (63%), Gaps = 9/249 (3%) Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 +LE++ G GG+E ALF DL RMY RYAA W++ ++ S+ + GG +E++ + Sbjct: 6 LLELKPGVGGAEGALFCVDLERMYTRYAAEHGWQLTPVNRSETESGGLREVLMEVRKG-- 63 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP----EAAEIDVDIPLEDIRIDTMR 228 R FESG HRVQR+PATE+SGRVHTS A+V VLP +ED+RI+ MR Sbjct: 64 KGRGDFESGAHRVQRIPATESSGRVHTSTASVLVLPLVEEGTPTTTPLFKMEDVRIEVMR 123 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 A G+GGQHVN T+SAVR+THIPTGI+V E+SQH NR RA VL +RL + A Sbjct: 124 ARGAGGQHVNKTESAVRLTHIPTGIVVAMQDERSQHVNRRRAFTVLTSRLLAQRLVQEAE 183 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG-YIDDIINPLLTA 346 +R R + DRS++IRTYN+ Q RITDHRI +++ LE V++G ++ +I L Sbjct: 184 DRRKRRNSLVSGVDRSDKIRTYNWPQSRITDHRIGMSV-NLEPVMEGHGLETLIRALAAD 242 Query: 347 HQAKMIGSA 355 H+ +++ Sbjct: 243 HEERLLEEM 251 >gi|164660096|ref|XP_001731171.1| hypothetical protein MGL_1354 [Malassezia globosa CBS 7966] gi|159105071|gb|EDP43957.1| hypothetical protein MGL_1354 [Malassezia globosa CBS 7966] Length = 395 Score = 175 bits (444), Expect = 7e-42, Method: Composition-based stats. Identities = 121/391 (30%), Positives = 193/391 (49%), Gaps = 38/391 (9%) Query: 3 FLSHKQICDLKNRFAEIELRMSE-SPSVDAYIK---LTEEYAAISPIISKISIYDQKKQE 58 + + D+ + A M E ++ ++ + + S + ++ Q Sbjct: 1 MSTTIKASDVVEKLA--SAMMQERQQLMENAQASVVASQRIKDLEAVHKTWSAWREQLQC 58 Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 QD + + Q ++ E +L + K I+E+R Sbjct: 59 VQDTQRLCETEKDKDMLEMAEQELSQMRDEADARHEALKQQILSNSRSIQSKGAIMELRQ 118 Query: 119 GTGGSEAALFVGDLFRMYERYAALR---------------KWKVEVLSSSDNDDGG---- 159 G GG E+ LF+G++ RMY ++ R W ++LS++ D Sbjct: 119 GVGGQESCLFLGEMLRMYIKFCETRAQKAQDEDDPSMLGAGWSTDLLSATPVDVSATSGA 178 Query: 160 ---YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-- 214 Y+E + I G F ++FE+GVHRVQR+PAT+ G++ TS + VLP AE D Sbjct: 179 GDAYREAILQIHGPNAFEALRFEAGVHRVQRIPATQNLGKLQTSTMAIIVLPMQAENDVS 238 Query: 215 -VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKV 272 + +D+R++TMRA G+GGQHVN T+SAVR+TH P+GI V+ +SQHQNR++A V Sbjct: 239 KDIVDSKDVRVETMRARGAGGQHVNRTESAVRLTHDPSGITVSMQDSRSQHQNRVKAWDV 298 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 LRARL D+ ++ A+E A R+ Q+ S +RSER+RTYNF Q R+TDHRI ++L + + Sbjct: 299 LRARLLDIHLQKEASENRALRRSQVASAERSERVRTYNFPQDRVTDHRIGISLSDIHRFM 358 Query: 333 QGY------IDDIINPLLTAHQAKMIGSASE 357 G + +I L+ + + E Sbjct: 359 DGDDSSGTGLSYLIEELMAREDEIRLHALLE 389 >gi|72071048|ref|XP_793802.1| PREDICTED: similar to Mitochondrial translational release factor 1-like [Strongylocentrotus purpuratus] gi|115937039|ref|XP_001184371.1| PREDICTED: similar to Mitochondrial translational release factor 1-like [Strongylocentrotus purpuratus] Length = 298 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 117/258 (45%), Positives = 165/258 (63%), Gaps = 3/258 (1%) Query: 100 LLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG 159 LLLP + DD I+E AG GG EA LF D+F MY+R+AA R W VL D GG Sbjct: 27 LLLPSEETDDNDVIMEFTAGVGGQEAMLFAADMFEMYQRFAAYRGWTFSVLEYFTTDMGG 86 Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + ++SG + ++ E+GVHRVQRVP TE+ GR+HTS +AVLP+ EID+ + Sbjct: 87 LRHASVSMSGDQAYLLLRQEAGVHRVQRVPRTESKGRIHTSTMAIAVLPQPKEIDLKLDP 146 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 +D+R++T +ASG+GGQHVNTTDSAVRITH+PTGI + E+SQH+NR AM +L+ R+Y Sbjct: 147 KDLRVETKKASGAGGQHVNTTDSAVRITHLPTGISAESQQERSQHKNRFIAMTMLQTRIY 206 Query: 279 DVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--I 336 + + + R Q+G+G RSE+IRTYN+ Q RITDHR T++ + L G + Sbjct: 207 NRILADQTSSERSIRSSQVGTGGRSEKIRTYNYQQDRITDHRRGRTVHGVPEYLLGSELL 266 Query: 337 DDIINPLLTAHQAKMIGS 354 D+++ + Q + + Sbjct: 267 DEMVTSCVEGDQCQQVRE 284 >gi|291442144|ref|ZP_06581534.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] gi|291345039|gb|EFE71995.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] Length = 375 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A +E + + D + + + +S + +++ + + DL + Sbjct: 25 DLDRMRADIAVLEEQAAAPSLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFE 84 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ + K + E+E L D + ++ IRA GG +A Sbjct: 85 MAEEEDDPDTRAEAEAELADVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K E+ +S ++ G K + + + E G HR+ Sbjct: 141 ADFAEKLQRMYLRWAEQHGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP VDI D+R+D R+SG ++ D V Sbjct: 201 VRISPFDNQGRRQTSFAGVEVLPVVEQSDHVDIDESDLRVDVYRSSGPSCNPRDS-DFMV 259 Query: 245 RITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGIM +S E+S+ +N++ AM VL+ARL R+ + A + G Sbjct: 260 RITHLPTGIMASSDSERSRTRNKVTAMNVLKARLLGRRRQEEQAKMDALKDE--GGNPCG 317 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 ++R+Y + + D R + E V G ID + + Sbjct: 318 NQVRSYELHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWR 362 >gi|153809227|ref|ZP_01961895.1| hypothetical protein BACCAC_03538 [Bacteroides caccae ATCC 43185] gi|149128203|gb|EDM19423.1| hypothetical protein BACCAC_03538 [Bacteroides caccae ATCC 43185] Length = 319 Score = 175 bits (444), Expect = 8e-42, Method: Composition-based stats. Identities = 90/320 (28%), Positives = 143/320 (44%), Gaps = 19/320 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + IS Y++ K +L + + + + + LE + Sbjct: 1 MKLVKDLQKWISGYNEVKTLADELELAFDFYKEELVTEEDVDAAYAKASEAVEALELKNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 61 LRDEADQMD----CVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATIANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K I G + +K E+GVHR+ RV A G+ TS A+V V P I+V+I Sbjct: 117 GIKTCTINIEGDFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 ETARISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K++I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKMKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTA 346 + V+ G ID I L Sbjct: 294 DVNGVMDGKIDGFIKAYLME 313 >gi|239933740|ref|ZP_04690693.1| peptide chain release factor 2 [Streptomyces ghanaensis ATCC 14672] Length = 359 Score = 175 bits (443), Expect = 9e-42, Method: Composition-based stats. Identities = 91/345 (26%), Positives = 156/345 (45%), Gaps = 12/345 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-- 65 + ++ A +E + + D + + + +S + +++ + + DL + Sbjct: 9 DLDRMRADIAVLEEQAAAPSLWDNPDEAQKITSRLSHLQAEVRKAEALRGRIDDLAVLFE 68 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + D + R A+ E+ + K + E+E L D + ++ IRA GG +A Sbjct: 69 MAEEEDDPDTRAEAEAELADVRKALDEMEV----RTLLSGEYDAREALVNIRAEAGGVDA 124 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY R+A +K E+ +S ++ G K + + + E G HR+ Sbjct: 125 ADFAEKLQRMYLRWAEQHGYKTEIYETSYAEEAGIKSTTFAVQVPYAYGTLSVEQGTHRL 184 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ + GR TS A V VLP VDI D+R+D R+SG ++ D V Sbjct: 185 VRISPFDNQGRRQTSFAGVEVLPVVEQSDHVDIDESDLRVDVYRSSGPSCNPRDS-DFMV 243 Query: 245 RITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGIM +S E+S+ +N++ AM VL+ARL R+ + A + G Sbjct: 244 RITHLPTGIMASSDSERSRTRNKVTAMNVLKARLLGRRRQEEQAKMDALKDE--GGNPCG 301 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 ++R+Y + + D R + E V G ID + + Sbjct: 302 NQVRSYELHPYQMVKDLRTEHEVGNPESVFNGEIDGFLEAGIRWR 346 >gi|256842350|ref|ZP_05547853.1| peptide chain release factor RF-2 [Parabacteroides sp. D13] gi|256735957|gb|EEU49288.1| peptide chain release factor RF-2 [Parabacteroides sp. D13] Length = 322 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 148/324 (45%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y + ++L + + + +LE Sbjct: 1 MKKVKELKKWIELYSEVHAAAEELELAYEYVKEEIITEEEVDAAYKKALHLLEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D D SC+L+I +G GG+E+ + L RMY+R+A +K+ + + + D+ Sbjct: 57 FRNMLRDEADQMSCVLKINSGAGGTESQDWASMLMRMYQRWAENNGYKISIANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + Sbjct: 117 GIKTVTFNIEGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 EAAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G IDD I L + Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFAGE 317 >gi|306840415|ref|ZP_07473178.1| peptide chain release factor 2 [Brucella sp. BO2] gi|306289615|gb|EFM60824.1| peptide chain release factor 2 [Brucella sp. BO2] Length = 292 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 104/287 (36%), Positives = 151/287 (52%), Gaps = 12/287 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +G+ D I + A+ + ++ EI +L D LE+ AG GG+E+ Sbjct: 1 MGEEEGDKSIVEDAEKTIRDLKDEID----RRQIDMLLSGEADANDTYLEVHAGAGGTES 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A KVEV+ + ++ G K + G + +K ESGVHR+ Sbjct: 57 QDWASMLLRMYTRWAERNGRKVEVMEVHEGEEAGIKSATILVKGHNSYGMLKTESGVHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ R HTS A++ V P I+V + D+RIDT RASG+GGQHVNTTDSAV Sbjct: 117 VRISPYDSNARRHTSFASIWVYPVIDDNIEVQVTEADVRIDTYRASGAGGQHVNTTDSAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 RITHI TGI+V +E+SQH+NR +A +LRARLY+ E K+ A K IG G Sbjct: 177 RITHIATGIVVQCQAERSQHKNREKAWSMLRARLYEEELKKREEATDAANATKTDIGWG- 235 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + + D R + + VL G + + L Sbjct: 236 --HQIRSYVLQPYQLVKDLRTGVESTNPQEVLDGAVTPFMEAALAHR 280 >gi|328794147|ref|XP_003252002.1| PREDICTED: peptide chain release factor 2-like, partial [Apis mellifera] Length = 276 Score = 175 bits (443), Expect = 1e-41, Method: Composition-based stats. Identities = 92/257 (35%), Positives = 142/257 (55%), Gaps = 8/257 (3%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 + LL D + ++EI G GG+EA + L RMY+RYA + +K E+ + Sbjct: 15 HNYELDLLLSGKYDSHNALIEIHPGAGGTEAMDWGQMLLRMYQRYADICGFKFEINNYEP 74 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 ++ G K + A + G+ + MK E+GVHR+ R+ +++ R HTS A+V V+PE + Sbjct: 75 GEEAGLKSVSAKVCGKNAYGLMKSENGVHRLVRISPFDSAKRRHTSFASVEVIPEIDDSI 134 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKV 272 VDI +D+RID R+SG+GGQH+N T SAVRITH+PTG + + +++SQ QNR AM Sbjct: 135 KVDINPKDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGFVTTSQAQRSQLQNRETAMNE 194 Query: 273 LRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE 329 LRA+L+ +E ++ + A + Q IG G +IR+Y F + D R Sbjct: 195 LRAKLFHLEEEKKRQHKQALKGDQKEIGWG---SQIRSYVFHPYNLVKDLRTGYETSDTS 251 Query: 330 YVLQGYIDDIINPLLTA 346 V+ G + + L Sbjct: 252 GVMDGKLQPFVYSYLQW 268 >gi|32423703|gb|AAP81246.1| peptide chain release factor [Candidatus Portiera aleyrodidarum] Length = 297 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 95/247 (38%), Positives = 135/247 (54%), Gaps = 4/247 (1%) Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 D + +EI+AG+GG E+ + L RMY R+A +K E ++ + D G K Sbjct: 50 FSGDFDKNNAYVEIKAGSGGVESQDWANMLLRMYSRWAVTHDFKTETVNLNIGDLLGVKS 109 Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE--AAEIDVDIPLE 220 I G F M+ E G+HR+ R ++S R HTS +V V PE ++ I Sbjct: 110 ATLHIKGDYAFGWMRTEKGIHRLVRKSPFDSSKRRHTSFTSVFVYPEITMKVHNIKINTN 169 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 ++RIDT R+SG+GGQHVNTTDSAVRITH+PT I+V SE+SQH N+ RA+ +L+ +LYD Sbjct: 170 ELRIDTYRSSGAGGQHVNTTDSAVRITHLPTKIVVECQSERSQHSNKERALTLLKTKLYD 229 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 ++K+ ER K + G +IR+Y RI D R + E VL G +D Sbjct: 230 FDKKKGEVERINIEKKKAG-ICWGNQIRSYVLDAQRIKDLRTGVKNNNCEKVLNGELDLF 288 Query: 340 INPLLTA 346 I + Sbjct: 289 IEASIKQ 295 >gi|322379487|ref|ZP_08053853.1| Peptide chain release factor RF-2 [Helicobacter suis HS1] gi|322380468|ref|ZP_08054667.1| peptide chain release factor 2 [Helicobacter suis HS5] gi|321147113|gb|EFX41814.1| peptide chain release factor 2 [Helicobacter suis HS5] gi|321148094|gb|EFX42628.1| Peptide chain release factor RF-2 [Helicobacter suis HS1] Length = 382 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 99/344 (28%), Positives = 174/344 (50%), Gaps = 16/344 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 LK + +I + + +E I ++ +E +L +I Sbjct: 39 EGLKVQLEQITQEQVDPAFWQDKTLAAQKNQEKMRIERLLQTYEHTKHTLEEALELFELI 98 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + A ++ ++ + ++ + D I+ I+ G GG+E+ Sbjct: 99 QED-------TQALTQLFEEAPKLAARVQSMEVSVMLANDQDSMDAIVSIQPGVGGTESQ 151 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + L+RMY R+A + +KVE+L + ++ G K + I G V+ MK E+G+HR+ Sbjct: 152 DWASMLYRMYLRWAERKGFKVELLDYQEGEEAGIKGVAFVIRGVNVYGYMKNENGIHRLV 211 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R+ A+G+ HTS A+V V PE + I +DIR+DT RASG+GGQHVN T+SA+R Sbjct: 212 RMSPFNANGKRHTSFASVQVSPEVDDDINIVIEEKDIRVDTYRASGAGGQHVNKTESAIR 271 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 ITH TGI+V +++SQH+N+ A+K+L+++LY++E + + + K IG G Sbjct: 272 ITHFATGIVVQCQNDRSQHKNKAMALKMLKSKLYELELCKQREQSNMEEKSDIGWG---H 328 Query: 305 RIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 +IR+Y + +I D R + + +L G +D ++ +L + Sbjct: 329 QIRSYVLAPYQQIKDARSEIAYSNVGAILDGDLDTLMEDVLVSR 372 >gi|322704975|gb|EFY96565.1| putative translation releasing factor RF-1 [Metarhizium anisopliae ARSEF 23] Length = 415 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 111/371 (29%), Positives = 183/371 (49%), Gaps = 36/371 (9%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L ++ ++ + + + + +S + Q +DL + Sbjct: 28 QRAKALSAEHEALQKSLNAQFDSQKARRAG----ELHRVAAALSAWQQSHSSIRDLQAMA 83 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D D ++ +A+ E+ A E+++ LE ++ L P+ D C++E R G GG E Sbjct: 84 DDE-QDPDLAAIARDELQAEEEKLASLEKNLSASLTPQHPFADMPCMIEFRPGPGGLEGR 142 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRM 176 F LF+MY+ A R ++ VL D G +E + I +G + Sbjct: 143 YFTDSLFKMYKALCARRGYRANVLKYEMADAAGDQSSSAGENPVQEAILEIQDQGAYDLF 202 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI----------------DVDIPLE 220 + E+G+HRVQR+P+TE+ GRVHTSA V VLP E D + + Sbjct: 203 RSEAGMHRVQRIPSTESKGRVHTSAVAVWVLPSFPEGGSSGGGGEADADDPESDFYVNPQ 262 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYD 279 ++R++TMRA G+GGQHVN T+SA+R+TH+PTG V+ +SQ +NR A K+LR+R+ Sbjct: 263 EVRVETMRARGAGGQHVNKTESAIRMTHLPTGTTVSMQDHRSQQRNREDAWKLLRSRIAG 322 Query: 280 VERKRMANERSANRKLQIGSGD--RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-- 335 + +E + R + R ++IRTYN++Q R TDHR L ++ L VL G Sbjct: 323 QRAELRMHEAARLRNSVLAQAQITRGDKIRTYNYNQDRCTDHRAGLDVHNLPDVLDGGET 382 Query: 336 IDDIINPLLTA 346 +D +++ Sbjct: 383 LDRVMDAAKEW 393 >gi|255016197|ref|ZP_05288323.1| peptide chain release factor RF-2 [Bacteroides sp. 2_1_7] Length = 322 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 89/324 (27%), Positives = 148/324 (45%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y + ++L + + + +LE Sbjct: 1 MKKVKELKKWIELYGEVHAAAEELELAYEYVKEEIITEEEVDAAYKKALHLLEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D D SC+L+I +G GG+E+ + L RMY+R+A +K+ + + + D+ Sbjct: 57 FRNMLRDEADQMSCVLKINSGAGGTESQDWASMLMRMYQRWAENNGYKISIANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + Sbjct: 117 GIKTVTFNIEGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 EAAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G IDD I L + Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFAGE 317 >gi|297679454|ref|XP_002817545.1| PREDICTED: peptide chain release factor 1-like, mitochondrial-like isoform 2 [Pongo abelii] Length = 344 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 130/314 (41%), Positives = 186/314 (59%), Gaps = 41/314 (13%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG ++ Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRQA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVER 282 IDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ AM LRA+LY + Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKELAMTKLRAKLYSMHL 264 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDII 340 + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ LE ++G +D+++ Sbjct: 265 EEETNKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDLETFMRGDYLLDELV 324 Query: 341 NPLLTAHQAKMIGS 354 L + + Sbjct: 325 QSLKEYADYESLVE 338 >gi|255692994|ref|ZP_05416669.1| peptide chain release factor 2 [Bacteroides finegoldii DSM 17565] gi|260621306|gb|EEX44177.1| peptide chain release factor 2 [Bacteroides finegoldii DSM 17565] Length = 319 Score = 174 bits (442), Expect = 1e-41, Method: Composition-based stats. Identities = 89/320 (27%), Positives = 142/320 (44%), Gaps = 19/320 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I Y++ K +L + + + + + LE + Sbjct: 1 MKLVKDLQKWIDGYNEVKTLADELELAFDFYKEELVTEEDVDTAYAKAREAVEALELKNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 D C+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 61 LRDEADQMD----CVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATIANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K I G + +K E+GVHR+ RV A G+ TS A+V V P I+V+I Sbjct: 117 GIKTCTINIEGDFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 ETARISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTA 346 + V+ G I+D I L Sbjct: 294 DVNGVMDGKIEDFIKAYLME 313 >gi|298377870|ref|ZP_06987820.1| peptide chain release factor 2, programmed [Bacteroides sp. 3_1_19] gi|301312251|ref|ZP_07218168.1| peptide chain release factor 2, programmed [Bacteroides sp. 20_3] gi|298265316|gb|EFI06979.1| peptide chain release factor 2, programmed [Bacteroides sp. 3_1_19] gi|300829673|gb|EFK60326.1| peptide chain release factor 2, programmed [Bacteroides sp. 20_3] Length = 322 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 89/328 (27%), Positives = 148/328 (45%), Gaps = 19/328 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I +Y + ++L + + + +LE Sbjct: 1 MKKVKELKKWIELYGEVHAAAEELELAYEYVKEEIITEEEVDAAYKKALHLLEDLE---- 56 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + + +D D SC+L+I +G GG+E+ + L RMY+R+A +K+ + + + D+ Sbjct: 57 FRNMLRDEADQMSCVLKINSGAGGTESQDWASMLMRMYQRWAENNGYKISIANYQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDI 217 G K + I G + +K E+GVHR+ RV A G+ TS A+V V P I+V + Sbjct: 117 GIKTVTIDIEGDYAYGYLKSENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDTIEVKV 176 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHI---------PTGIMVTSSEKSQHQNRLR 268 I DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 EAAAISWDTFRSGGAGGQNVNKVESGVRLRYQFKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAKMIGS 354 + V+ G IDD I L + Sbjct: 294 DVNGVMDGKIDDFIKAYLMEFAGEESAE 321 >gi|300361282|ref|ZP_07057459.1| peptide chain release factor RF2 [Lactobacillus gasseri JV-V03] gi|300353901|gb|EFJ69772.1| peptide chain release factor RF2 [Lactobacillus gasseri JV-V03] Length = 270 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 98/257 (38%), Positives = 148/257 (57%), Gaps = 8/257 (3%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ LL D D + ++EI G GG+EA + L RMY+RYAA K E+ Sbjct: 9 HDYELSLLLSDKYDQHNALMEIHPGAGGTEAMDWADMLLRMYQRYAANHDLKFEIEDYEP 68 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 ++ G K + I G+ F +K E+GVHR+ R+ +++ R HTS A+V V+PE + Sbjct: 69 GEEAGVKSVSIRIQGKNAFGLLKSENGVHRLVRISPFDSAKRRHTSFASVEVIPEIDQSI 128 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 +VDI +D+RID R+SG+GGQH+N T SAVRITH+PTGI+ + +++SQ QNR AM + Sbjct: 129 EVDINPDDLRIDVYRSSGAGGQHINKTSSAVRITHLPTGIVTSSQAQRSQLQNRETAMNM 188 Query: 273 LRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLE 329 LRA+L+ +E ++ + + Q IG G +IR+Y F + DHR N + Sbjct: 189 LRAKLFQLEEEKKKKQTEELKGNQKEIGFG---SQIRSYVFHPYNMVKDHRTNFETSDVN 245 Query: 330 YVLQGYIDDIINPLLTA 346 V+ G +D+ I L Sbjct: 246 GVMDGKLDNFIYAYLQW 262 >gi|255010031|ref|ZP_05282157.1| putative peptide chain release factor [Bacteroides fragilis 3_1_12] Length = 319 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 141/324 (43%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I Y++ K +L + + + + LE + Sbjct: 1 MKLVKGLQKWIDGYNEVKTLADELELAFDFYKDELVTEQEVDEAYAKALEHVENLELQNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 +D D SC+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 61 ----LRDEADQMSCVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATMANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP 218 G K I G + +K E+GVHR+ RV A G+ TS A+V V P + Sbjct: 117 GIKTCTIQIEGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 219 LEDI-RIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 L DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 LPACISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G I+ I L ++ Sbjct: 294 DVNGVMDGKIEGFIKAYLMEFSSE 317 >gi|124024426|ref|YP_001018733.1| peptide chain release factor 2 [Prochlorococcus marinus str. MIT 9303] gi|123964712|gb|ABM79468.1| peptide chain release factor RF-2 [Prochlorococcus marinus str. MIT 9303] Length = 319 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 87/314 (27%), Positives = 149/314 (47%), Gaps = 9/314 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 + + + +I ++ + Q + D + + + R Sbjct: 1 MRQLDEVKAQLVQIKLWRSAVNDAQATLELYDLEPDDEMLSEAQSGLQQLRQGLDRW--- 57 Query: 96 EINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN 155 L D K +L I AG GG++A + L RMY R+A +V V S+ Sbjct: 58 --ELERLLSGEYDKKGAVLSINAGAGGTDAQDWAQMLLRMYTRWAEDHDMRVTVDELSEG 115 Query: 156 DDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-D 214 ++ G K I GR + ++ E G HR+ R+ A+G+ TS A V ++P+ + + Sbjct: 116 EEAGIKSATVEIEGRYAYGYLRNEKGTHRLVRISPFNANGKRQTSFAGVEIMPKIDQEVE 175 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 +DIP +D+ + T R+ G+GGQ+VN ++AVRI HIPTG+ V + E+SQ QN+ +A+ +L Sbjct: 176 LDIPEKDLEVTTSRSGGAGGQNVNKVETAVRILHIPTGLAVRCTQERSQLQNKEKALALL 235 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVL 332 +A+L + +++ A E + R I +IR Y F + + D R ++ V+ Sbjct: 236 KAKLMVIAQEQRAAEIADIR-GDIVEAAWGNQIRNYVFHPYQMVKDLRTAEETTDVQAVM 294 Query: 333 QGYIDDIINPLLTA 346 G +D I LL Sbjct: 295 NGELDRFIQTLLRQ 308 >gi|289812362|ref|ZP_06542991.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 288 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 131/264 (49%), Positives = 186/264 (70%), Gaps = 9/264 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 29 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 88 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 89 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 144 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 145 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 204 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE E + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 205 VQRVPATESQGRIHTSACTVAVMPELPEAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 264 Query: 244 VRITHIPTGIMV-TSSEKSQHQNR 266 +RITH+PTGI+V E+SQH+N+ Sbjct: 265 IRITHLPTGIVVECQDERSQHKNK 288 >gi|256079594|ref|XP_002576071.1| peptide chain release factor [Schistosoma mansoni] gi|238661330|emb|CAZ32306.1| peptide chain release factor, putative [Schistosoma mansoni] Length = 1202 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 107/350 (30%), Positives = 188/350 (53%), Gaps = 27/350 (7%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD- 68 ++ + + + M+ + L+E + + PI+ I D + ++++ ++ D Sbjct: 47 KNIISEYENVTKLMTSGAKECDLLPLSECWKNLRPIVDVIEELDILLEADKEVDQLVTDI 106 Query: 69 -----HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP-KDTDDDKSCILEIRAGTGG 122 + ++++ +A++E + LE ++ LLLP + D + + I+E+ AG GG Sbjct: 107 VGTDTEDDVNDLKAIAELERKQRNVQREALEKKLLSLLLPIDERDLNSAVIMELFAGAGG 166 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDN-------------------DDGGYKEI 163 EA LF DL MY +A + W VL + + G Sbjct: 167 KEAGLFAHDLMNMYHAFAVQQNWSFTVLHKTVMSNEECAPSHNETSLSYVRVEIEGEPTT 226 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A + G + ++K+E+GVHRVQRVP T + ++HTS V++ P+ ++DVDIP D++ Sbjct: 227 EAGVMSLGAYGQLKWEAGVHRVQRVPVTSSQNKIHTSTVAVSIQPKYEDVDVDIPDNDLK 286 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 + R +G GGQ+VN + SAVR+TH+PTGI++ E+ QH N++ A+ +L+ RL ++ Sbjct: 287 WEFHRPTGPGGQNVNKSTSAVRLTHLPTGIVISCQRERYQHVNKILALDMLKERLREIHL 346 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 K ++ + R+ +G+ DRSE+IRTYNF Q R+TDHR+N + L + Sbjct: 347 KSQSHLIDSIRRSHLGNLDRSEKIRTYNFPQDRVTDHRLNHSWNNLYRFM 396 >gi|326335638|ref|ZP_08201825.1| peptide chain release factor RF2 [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692404|gb|EGD34356.1| peptide chain release factor RF2 [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 296 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 89/292 (30%), Positives = 155/292 (53%), Gaps = 12/292 (4%) Query: 59 EQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 ++L ++ + ++ + + I LE + + D D S +L+I A Sbjct: 2 LEELQVMLDFYKENAISAEEVEAFYAKTLTHIENLE----FRNMLSDEGDALSAVLQITA 57 Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG+E+ + L RMY +A + + V+ L+ + D G K + I G F +K Sbjct: 58 GAGGTESCDWASMLMRMYIMWANRQGFSVKELNYQEGDVAGVKTVTLEIDGEFAFGYLKG 117 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 E+GVHR+ R+ +++ + HTS A+V V P I+++I DI +TMR+SG+GGQ+V Sbjct: 118 ENGVHRLVRISPFDSNAKRHTSFASVYVYPLADDTIEIEINPADISFETMRSSGAGGQNV 177 Query: 238 NTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--K 294 N ++AVR+ H PTGI++ S +SQ N+ +A+++L+++LY++E K+ +R K Sbjct: 178 NKVETAVRLRHHPTGIIIENSETRSQLDNKNKALQLLKSQLYEMELKKRQAKRDEIEANK 237 Query: 295 LQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 ++I G +IR Y + + D R N ++ V+ G IDD + L Sbjct: 238 MKIEWG---SQIRNYVMQPYKLVKDVRTNYETTNVDAVMNGEIDDFLKAYLM 286 >gi|212545056|ref|XP_002152682.1| mitochondrial translation release factor (RF-1), putative [Penicillium marneffei ATCC 18224] gi|210065651|gb|EEA19745.1| mitochondrial translation release factor (RF-1), putative [Penicillium marneffei ATCC 18224] Length = 421 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 113/372 (30%), Positives = 196/372 (52%), Gaps = 29/372 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + ++ + E+ K+ + ++P+ + +D+ + +L+++I D Sbjct: 49 SIAKEHEKLRDVLGENFD----TKVAKRLGELAPVAQAVKDWDKTHETITELNSLISDPE 104 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + ++ + +++ L+P+ C+LEIR G GG EA LF Sbjct: 105 TDSELRSLALEDLDQTQTQLPIVSDKLKSALIPRHPFAALPCLLEIRPGAGGDEAGLFAY 164 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV---ATISGRGVFSRMKFESGVHRVQR 187 +L RMY+ + + + + ++ + + I G + ++ E GVHRVQR Sbjct: 165 ELLRMYQNFCSRKGLRTSIVKQDMEEAISNDRLSEAVVEIETPGSYDILRTEIGVHRVQR 224 Query: 188 VPATEASGRVHTSAATVAVLPEAA--------------EIDVDIPLEDIRIDTMRASGSG 233 VPATEA GR HTSA +V +LP D + ++++ + MRASG+G Sbjct: 225 VPATEAKGRTHTSAVSVMILPNFPESGANEENLNFEDPNSDYYVNPQEVKSEKMRASGAG 284 Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQHVN T+SA+R+THIPTG+ V+ +SQH NR +A ++LRA+L + R+ E Sbjct: 285 GQHVNKTESAIRLTHIPTGLTVSMQDSRSQHANRKKAWQLLRAKLAERRREAREEEMVKL 344 Query: 293 RKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA- 346 R+ +G R +++RTYNFSQ R TDHR +T++ L+ VL G ++ +++ + T Sbjct: 345 RRGAMGGVAKMGRGDKVRTYNFSQSRCTDHRSGITVHDLDSVLDGGHGLETVMDSVRTWL 404 Query: 347 -HQAKMIGSASE 357 + + E Sbjct: 405 VDRDVQMMMLEE 416 >gi|189183642|ref|YP_001937427.1| peptide chain release factor RF-2 [Orientia tsutsugamushi str. Ikeda] gi|189180413|dbj|BAG40193.1| peptide chain release factor RF-2 [Orientia tsutsugamushi str. Ikeda] Length = 287 Score = 174 bits (440), Expect = 2e-41, Method: Composition-based stats. Identities = 101/286 (35%), Positives = 147/286 (51%), Gaps = 8/286 (2%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I +D E + E +++E ++L L D C L+I AG GG+E+ Sbjct: 4 IAIKENDIEFIHNIEQEWKKLQEEAKKL----QVECLFTSDVDVNDCFLDINAGAGGTES 59 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + + RMY R+A +K EV+ D ++ G K I G + K ESGVHR+ Sbjct: 60 NDWASMMLRMYLRFAESMNFKTEVVYLLDGEEAGVKSASVKICGHNAYGWFKTESGVHRL 119 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R A G+ TS A+ V P I V I +DIRIDT RASG+GGQHVNTTDSA+ Sbjct: 120 VRNSPFNALGKRMTSFASAWVYPVINDNIQVVIEDKDIRIDTYRASGAGGQHVNTTDSAI 179 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH PT I+V +++SQH+N+ AM++L+A++Y++E+K+ NE N Sbjct: 180 RITHFPTKIVVQCQNDRSQHKNKAEAMRMLKAKIYELEQKK-QNEIINNHNAAKTDNSWG 238 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 IR+Y + + D R N+ + VL G ++ I L Sbjct: 239 YHIRSYVLQPYQLVKDLRTNVETSDTKRVLDGDLEKFIYASLIHQN 284 >gi|295698346|ref|YP_003603001.1| peptide chain release factor 2 [Candidatus Riesia pediculicola USDA] gi|291156977|gb|ADD79422.1| peptide chain release factor 2 [Candidatus Riesia pediculicola USDA] Length = 369 Score = 174 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 176/352 (50%), Gaps = 20/352 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLT------EEYAAISPIISKISIYDQKKQEEQDLH 63 + K + ++S + KL+ + A I KI Q + + L Sbjct: 27 EEKKIELTTLRNKISSNEIW-RSKKLSSLIGLQKLVAIKEIEIEKIEKIKQYLENIEILI 85 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + + +++ +R + + L +D C +++++G+GG Sbjct: 86 ECLKEKRDEDFLKE-----TYRDLFNVRSMIENLKIFRLFSKENDFCDCYIDLQSGSGGI 140 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 ++ + L +MY +++ L+ ++ VL++S + G K I GR + ++ E+G+H Sbjct: 141 DSQDWTSMLLKMYLKWSDLKNFRSYVLNTSYGEITGIKSSTIMIKGRYAYGWLRTETGIH 200 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE--DIRIDTMRASGSGGQHVNTTD 241 R+ R ++SGR HTS ++V V P + D +I ++ D++ID+ ++SG+GGQH N T+ Sbjct: 201 RLVRKSPFDSSGRRHTSFSSVFVYPVLEDPDQEIRIQSSDLKIDSYKSSGAGGQHTNKTE 260 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIG 298 SA+RITHIPTGI+ S +SQH+N+ +A+K L+ +LY++++K + N K I Sbjct: 261 SAIRITHIPTGIVTQCQSNRSQHKNKEQALKQLKNKLYEIQKKEKQENQKVIENNKFDIA 320 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 G+ +IR+Y R+ D R + + VL+G ID I L + Sbjct: 321 WGN---QIRSYILDHSRVKDLRTGIEERNVRSVLEGKIDKFIKANLILRKKD 369 >gi|171693921|ref|XP_001911885.1| hypothetical protein [Podospora anserina S mat+] gi|170946909|emb|CAP73713.1| unnamed protein product [Podospora anserina S mat+] Length = 431 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 117/369 (31%), Positives = 192/369 (52%), Gaps = 33/369 (8%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L ++ +++++ K+ + + I ++ K ++L ++ + Sbjct: 46 LTAEHDQLTAQLADNFD----EKIAKRAGEVHRIAEAFKKFEHAKASLRELEGLLK--SD 99 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D+E+R++AQ ++ A +++ E ++ L PK D C++E+ G GG+E F Sbjct: 100 DAEMREMAQEDLAATNEQLAESSRNLSVALTPKHPFADMPCLIEVVPGPGGTEGRFFADS 159 Query: 132 LFRMYERYAALRKWKVEVLSS----SDNDDGG-----YKEIVATISGRGVFSRMKFESGV 182 +F+MY+ Y A + ++ +V+ S + GG +E V + G ++ + E+G+ Sbjct: 160 VFKMYQAYCANKGFRTKVVQYLAADSTGEKGGDGETALQEAVLEVMEEGAYAHFRGEAGM 219 Query: 183 HRVQRVPATEASGRVHTSAATVAVLP-------------EAAEIDVDIPLEDIRIDTMRA 229 HRVQRVPATE SGR HTSA V VLP + E D I +++ + MRA Sbjct: 220 HRVQRVPATEKSGRTHTSAVAVWVLPSFAENATASDGDWDNPESDFYIDPAEVKSEKMRA 279 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG+GGQHVN T+SA+R+THIPTGI V+ +SQH NR A ++LR+R+ R+ Sbjct: 280 SGAGGQHVNKTESAIRLTHIPTGITVSMQDSRSQHTNRADAWRLLRSRIAQKRREAREEA 339 Query: 289 RSANRKLQIGSGD--RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLL 344 A R + S R ++IRTYN+ Q R TDHR L ++ L VL+G + +I+ + Sbjct: 340 ARALRSSVLSSAQLTRGDKIRTYNYGQDRCTDHRAGLDVHNLPDVLRGGDTLGKVIDAVH 399 Query: 345 TAHQAKMIG 353 K I Sbjct: 400 GWLAEKDIQ 408 >gi|53711665|ref|YP_097657.1| peptide chain release factor RF-2 [Bacteroides fragilis YCH46] gi|60679910|ref|YP_210054.1| putative peptide chain release factor [Bacteroides fragilis NCTC 9343] gi|253564278|ref|ZP_04841735.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265765049|ref|ZP_06093324.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52214530|dbj|BAD47123.1| peptide chain release factor RF-2 [Bacteroides fragilis YCH46] gi|60491344|emb|CAH06092.1| putative peptide chain release factor [Bacteroides fragilis NCTC 9343] gi|251948054|gb|EES88336.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254433|gb|EEZ25867.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161435|emb|CBW20975.1| putative peptide chain release factor [Bacteroides fragilis 638R] Length = 319 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 87/324 (26%), Positives = 140/324 (43%), Gaps = 19/324 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I Y+ K +L + + + + LE + Sbjct: 1 MKLVKGLQKWIEGYNDVKTLTDELELAFDFYKDELVTEQEVDEAYAKALEHVENLELQNM 60 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 +D D SC+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 61 ----LRDEADQMSCVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATMANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP 218 G K I G + +K E+GVHR+ RV A G+ TS A+V V P + Sbjct: 117 GIKTCTIQIEGDYAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 219 LEDI-RIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 L DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 LPACISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNFQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTAHQAK 350 + V+ G I+ I L ++ Sbjct: 294 DVNGVMDGKIEGFIKAYLMEFSSE 317 >gi|300868546|ref|ZP_07113164.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506] gi|300333459|emb|CBN58356.1| peptide chain release factor 2 [Oscillatoria sp. PCC 6506] Length = 291 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 82/289 (28%), Positives = 139/289 (48%), Gaps = 9/289 (3%) Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++ +S +++ + + L D +L I AG GG+ Sbjct: 2 ELLELETDESLLQEAYTNLSQLSRELDQW-----ELQQLLSGPYDAGGAVLTINAGAGGT 56 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 +A + L RMY R+ + +KV + S+ D+ G K I GR + ++ E G H Sbjct: 57 DAQDWAEMLLRMYTRWGERQGYKVHLAEISEGDEAGLKSATLEIVGRYAYGYLRSEKGTH 116 Query: 184 RVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R+ R+ A+ + TS A V V+P +++DIP +D+ + T RA G GGQ+VN ++ Sbjct: 117 RLVRISPFNANDKRQTSFAGVEVMPILDRSVELDIPEKDLEVTTSRAGGKGGQNVNKVET 176 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRI H+PTG+ V + E+SQ QN+ +A+ +L+A+L V R++ A E + R + Sbjct: 177 AVRIVHLPTGLAVRCTEERSQLQNKEKALVLLKAKLLVVAREQRAKEIAEIRGDMVE-AA 235 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +IR Y F + + D R + + V+ G ++ I L Sbjct: 236 WGNQIRNYVFHPYQMVKDLRTGVETTAIADVMNGELEPFIQAYLRQENQ 284 >gi|169838345|ref|ZP_02871533.1| Protein chain release factor B [candidate division TM7 single-cell isolate TM7a] Length = 243 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 98/244 (40%), Positives = 145/244 (59%), Gaps = 4/244 (1%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + IL I +G GG+EA + L+RMY+R+A +KVEVL S ++ G K I I Sbjct: 1 MNNAILTINSGAGGTEACDWAEMLYRMYDRWANRHNFKVEVLDSLAGEEAGIKSITLNIK 60 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTM 227 G + +K E GVHR+ R+ +++ R HTS A V V PE + +DI ED+++DT Sbjct: 61 GNYAYGYLKGEKGVHRLVRISPFDSNARRHTSFAAVNVTPEIEDDVKIDIRPEDLKVDTY 120 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RASG+GGQHVNTTDSAVRITHIPT +V +E+SQ +NR AMK+L+++L+++E ++ Sbjct: 121 RASGAGGQHVNTTDSAVRITHIPTNTVVTCQNERSQLKNRETAMKILKSKLFELELEKRE 180 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 E + + + + +IR+Y F + DHR +E V+ G ID IN L Sbjct: 181 KEMAELKGTE-SKIEWGSQIRSYVFQPYKMVKDHRTKAEEGNVEKVMDGDIDLFINEYLK 239 Query: 346 AHQA 349 ++ Sbjct: 240 YAKS 243 >gi|29348961|ref|NP_812464.1| peptide chain release factor RF-2 [Bacteroides thetaiotaomicron VPI-5482] gi|29340868|gb|AAO78658.1| peptide chain release factor RF-2 [Bacteroides thetaiotaomicron VPI-5482] Length = 319 Score = 173 bits (439), Expect = 3e-41, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 140/320 (43%), Gaps = 19/320 (5%) Query: 39 YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 + + I Y++ K +L + + + + LE Sbjct: 1 MKLVKDLQKWIDGYNEVKTLADELELSFDFYKEELVTEGDVDAAYAKASEAVEALEL--- 57 Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 + +D D +C+L+I +G GG+E+ + L RMY RYA +K + + + D+ Sbjct: 58 -KNMLRDEADQMACVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATIANLQEGDEA 116 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP 218 G K I G + +K E+GVHR+ RV A G+ TS A+V V P + Sbjct: 117 GIKTCTINIEGDFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNI 176 Query: 219 LEDI-RIDTMRASGSGGQHVNTTDSAVRITHIPTG---------IMVTSSEKSQHQNRLR 268 L DT R+ G+GGQ+VN +S VR+ + ++ + + Q +NR Sbjct: 177 LPACISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNREN 236 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM+ LR+ LYD E + E++ K +I G +IR+Y F R+ DHR N Sbjct: 237 AMRQLRSILYDKELQHRMAEQAKVEAGKKKIEWG---SQIRSYVFDDRRVKDHRTNYQTS 293 Query: 327 KLEYVLQGYIDDIINPLLTA 346 + V+ G I++ I L Sbjct: 294 DVNGVMDGKIEEFIKAYLME 313 >gi|257463869|ref|ZP_05628255.1| peptide chain release factor 2 [Fusobacterium sp. D12] Length = 326 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 106/336 (31%), Positives = 172/336 (51%), Gaps = 21/336 (6%) Query: 25 ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV-----IGDHNSDSEIRDLA 79 E + + A++ + ++ + +E ++ + GD +S E+ + Sbjct: 2 EEGFWNDKKSSSALIKAMNEEKALLASFQSLVEEIEEEEVLIEFVEAGDESSQVELEEKH 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + +E L L D + I+ I +G GG+EA + L+RMY R+ Sbjct: 62 KQLLKDMESFSTGL--------LLDGEYDGNNAIVTIHSGAGGTEACDWADMLYRMYTRW 113 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 +K+K+E + D G K I +SG + +K E G+HR+ R+ +A+ + HT Sbjct: 114 CHDKKYKIEEMDFMPGDSVGIKSITFLVSGYHAYGYLKCEKGIHRLVRISPFDANKKRHT 173 Query: 200 SAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S A+V V+PE E DIRIDT RASG+GGQH+N TDSAVRITH PTGI+V Sbjct: 174 SFASVEVVPEVDESVEVEVEAADIRIDTYRASGAGGQHINMTDSAVRITHFPTGIVVTCQ 233 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG- 314 E+SQ NR AMK+L+++L ++E K+ E + +IG G +IR+Y F Sbjct: 234 KERSQLNNRETAMKMLQSKLLELELKKKEEEMKKLQGEQSEIGWG---SQIRSYVFQPYT 290 Query: 315 RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + DHR + + ++ V+ G +D+ +N L ++ K Sbjct: 291 MVKDHRTGVEVGNIKAVMDGDLDEFMNGYLRWNKRK 326 >gi|242814526|ref|XP_002486386.1| mitochondrial translation release factor (RF-1), putative [Talaromyces stipitatus ATCC 10500] gi|218714725|gb|EED14148.1| mitochondrial translation release factor (RF-1), putative [Talaromyces stipitatus ATCC 10500] Length = 427 Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 113/359 (31%), Positives = 192/359 (53%), Gaps = 27/359 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + ++ + E+ K+ + ++P+ + +D+ + +L+++I D Sbjct: 50 SIAKEHEKLRGVLGENFD----TKVAKRMGELAPVAQAVKDWDKTHETITELNSLINDPE 105 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + ++ + ++ L+P+ C+LEIR G GG EA LF Sbjct: 106 TDSELRSLAIEDLEQTQTQLPIVSEKLKSALIPRHPFAALPCLLEIRPGAGGDEAGLFAY 165 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV---ATISGRGVFSRMKFESGVHRVQR 187 +L RMY+ + + + + ++ + + I G + ++ E GVHRVQR Sbjct: 166 ELLRMYQSFCSRKGLRTSIVKQDMEESTSNDRVTEAVVEIETPGSYDILRTEIGVHRVQR 225 Query: 188 VPATEASGRVHTSAATVAVLPEAA--------------EIDVDIPLEDIRIDTMRASGSG 233 VPATEA GR HTSA +V +LP D + +++R + MRASG+G Sbjct: 226 VPATEAKGRTHTSAVSVMILPSFPESGANEDNLNFEDPNSDYYVNPQEVRSEKMRASGAG 285 Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQHVN T+SA+R+THIPTG+ V+ +SQH NR +A ++LRA+L + R+ E Sbjct: 286 GQHVNKTESAIRLTHIPTGLTVSMQDSRSQHANRKKAWQLLRAKLAERRREAREEEMVKL 345 Query: 293 RKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 R+ +G R +++RTYNFSQ R TDHR +T++ L+ VL G ++ +++ + T Sbjct: 346 RRGAMGGVAKMGRGDKVRTYNFSQSRCTDHRSGITVHDLDSVLDGGHGLETVMDSVRTW 404 >gi|158317542|ref|YP_001510050.1| peptide chain release factor 2 [Frankia sp. EAN1pec] gi|158112947|gb|ABW15144.1| peptide chain release factor 2 [Frankia sp. EAN1pec] Length = 386 Score = 173 bits (437), Expect = 5e-41, Method: Composition-based stats. Identities = 94/330 (28%), Positives = 149/330 (45%), Gaps = 14/330 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + L+ R +E ++ + +S + I + ++ DL + Sbjct: 44 DVEGLRRRAQALEQEAADPDLWSDQDRAQAVTRRLSAVKGDIGRVEGLRRRLDDLIAALD 103 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + D A + LA + + + L D++ I+++ AG GG +AA Sbjct: 104 LGDDDLLTEAAADLPALARDI------STLEVRTLLSGEYDERDAIVQLSAGAGGVDAAD 157 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R+A + EV +S+ ++ G K + + ++ E GVHR+ R Sbjct: 158 WTAMLLRMYLRWAERHGYATEVFDTSEAEEAGLKSATFQVKCPYAYGTLRSEHGVHRLVR 217 Query: 188 VPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + + R TS A V V P VDI +++RID R+SG GGQ VNTTDSAVRI Sbjct: 218 ISPFDNQNRRQTSFAGVEVTPAVEVSDHVDIDEKELRIDIFRSSGPGGQGVNTTDSAVRI 277 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL--QIGSGDRS 303 TH+PT I+V +E+SQ QN+ AM VL+A+L + R A E+ + G Sbjct: 278 THLPTNIVVTCQNERSQLQNKAAAMMVLQAKLLERRRAEEAAEKQRLTGGPQDVSFG--- 334 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVL 332 +IR Y + + D R + VL Sbjct: 335 SQIRNYVLHPYQMVKDLRTEVETSNTNAVL 364 >gi|153210408|ref|ZP_01947622.1| peptide chain release factor 1 [Coxiella burnetii 'MSU Goat Q177'] gi|120575132|gb|EAX31756.1| peptide chain release factor 1 [Coxiella burnetii 'MSU Goat Q177'] Length = 267 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 119/263 (45%), Positives = 179/263 (68%), Gaps = 6/263 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R++EI +S+S ++ Y +L +EYA + PI+ + Q ++ Sbjct: 1 MKPSLIEKLKTLTYRYSEIGGLLSDSTVINDQDRYRELGKEYAQLEPIVKCFQQFQQNEK 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D E+R LA+ E+ + + ELE+++ LL+PKD +D+++ LEIR Sbjct: 61 AIESAEEMQQEK--DPELRKLAEEELEQLTLKKEELEDQLKLLLVPKDPNDERNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG+EAA+F GDLFRMY RYA + W+V ++S+ + + GG+KE++A + G GV+S++K Sbjct: 119 AGTGGNEAAIFAGDLFRMYARYAETKGWRVNIVSAHEGEHGGFKEVIARVIGEGVYSQLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVA++PE EID ++RIDT RASG+GGQH Sbjct: 179 FESGAHRVQRVPVTESQGRIHTSACTVAIMPEVDEIDQIKINPAELRIDTFRASGAGGQH 238 Query: 237 VNTTDSAVRITHIPTGIMVTSSE 259 VN TDSA+RITH+PTG++V + Sbjct: 239 VNRTDSAIRITHLPTGVVVECQD 261 >gi|189347853|ref|YP_001944382.1| peptide chain release factor 2 [Chlorobium limicola DSM 245] gi|189342000|gb|ACD91403.1| peptide chain release factor 2 [Chlorobium limicola DSM 245] Length = 249 Score = 173 bits (437), Expect = 6e-41, Method: Composition-based stats. Identities = 94/249 (37%), Positives = 140/249 (56%), Gaps = 7/249 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + DD + I+ I AG GG+EA + L+RMY R+A + +KV + D G K Sbjct: 1 MLSGKDDPGNAIITIHAGAGGTEAQDWAEILYRMYMRWAERKGFKVYTDDYQEGDGAGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 I G+ + +K E+GVHR+ RV +++ R HTS A+V PEA ++D+ E Sbjct: 61 TATLEIQGQYAYGYLKAENGVHRLVRVSPFDSNARRHTSFASVYTYPEAPPDVEIDVRKE 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+ + T R+ G GGQ+VN ++AVRI HIP+GI+V E+SQ QNR RAMK+L A+LY Sbjct: 121 DLELSTFRSGGKGGQNVNKVETAVRIKHIPSGIVVGCQQERSQFQNRERAMKMLMAQLYQ 180 Query: 280 VERKRMANERSAN--RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 +R+ ++ +K +I G +IR+Y RI DHR N + +E VL G +D Sbjct: 181 RQREEEEAKKREIEGKKKKIEWG---SQIRSYVLDDRRIKDHRTNYERFDIETVLDGDLD 237 Query: 338 DIINPLLTA 346 + L+ Sbjct: 238 AFMEKYLSE 246 >gi|39961534|ref|XP_364694.1| hypothetical protein MGG_09539 [Magnaporthe oryzae 70-15] gi|145011042|gb|EDJ95698.1| hypothetical protein MGG_09539 [Magnaporthe oryzae 70-15] Length = 425 Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 123/369 (33%), Positives = 190/369 (51%), Gaps = 36/369 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L + ++ + E+ K + IS + + +D + +L + + Sbjct: 36 NLTDEHDQLHTEL-EANF--DSTKA-KRMGEISKVADALKAWDAAQASINELTGLSK--S 89 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 D E+R+LA+ E+ E+ L ++I L PK D C++E R G GG E LF Sbjct: 90 QDEEMRELAKEELETTNNELGTLSDKIKIALTPKHPFADMPCLIEFRPGPGGMEGRLFTD 149 Query: 131 DLFRMYERYAALRKWKVEVLSSSDND-------DGGYKEIVATISGRGVFSRMKFESGVH 183 LF+MY+ Y + ++ + ++ D + +E + + G + + E+G+H Sbjct: 150 ALFKMYQSYCTFKGYRTKTVTYERVDGPPGADGETPLQEAILEVINPGSYDIFRGEAGMH 209 Query: 184 RVQRVPATEASGRVHTSAATVAVLP----------------EAAEIDVDIPLEDIRIDTM 227 RVQRVPATE SGR+HTSAA V VLP D I ++R++TM Sbjct: 210 RVQRVPATEKSGRIHTSAAAVWVLPSFPEEAGASDEGTTDVNDPNSDFYIDPTEVRVETM 269 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RA G+GGQHVN T+SA+R+TH+PTG MV+ E+SQ +NR A KVLR+R+ +R+ Sbjct: 270 RARGAGGQHVNKTESAIRLTHMPTGTMVSMQDERSQQRNREAAWKVLRSRI-AQKRREQR 328 Query: 287 NERSANRKLQIGSGD---RSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIIN 341 E + N + + S D R E+IRTYN+ Q R TDHR L ++ L V+ G +D II Sbjct: 329 EEMAQNLRSSVLSKDKITRGEKIRTYNYVQKRCTDHRSGLDIHNLPGVMMGGPELDRIIA 388 Query: 342 PLLTAHQAK 350 + A+ Sbjct: 389 SVHEWQTAR 397 >gi|56203458|emb|CAI18897.1| mitochondrial translational release factor 1-like [Homo sapiens] Length = 231 Score = 172 bits (435), Expect = 8e-41, Method: Composition-based stats. Identities = 106/208 (50%), Positives = 138/208 (66%), Gaps = 3/208 (1%) Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 L + GG + A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ Sbjct: 18 LEVTAGVGGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQ 77 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLR 268 EI++ I +D+RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+SQ +N+ Sbjct: 78 PTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERSQLKNKEL 137 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 AM LRA+LY + + N+R RK+QIGS RSE+IRTYNF Q R+TDHRIN TL+ L Sbjct: 138 AMTKLRAKLYSMHLEEEINKRQNARKIQIGSKGRSEKIRTYNFPQNRVTDHRINKTLHDL 197 Query: 329 EYVLQGY--IDDIINPLLTAHQAKMIGS 354 E +QG +D+++ L + + Sbjct: 198 ETFMQGDYLLDELVQSLKEYADYESLVE 225 >gi|296422823|ref|XP_002840958.1| hypothetical protein [Tuber melanosporum Mel28] gi|295637185|emb|CAZ85149.1| unnamed protein product [Tuber melanosporum] Length = 309 Score = 171 bits (434), Expect = 1e-40, Method: Composition-based stats. Identities = 118/306 (38%), Positives = 175/306 (57%), Gaps = 15/306 (4%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D N D E+R LA ++ + E + L I L+ S ++EIR GTGGSE Sbjct: 1 MLADRNLDPELRPLAVSDIASTESSLSALATTITQSLVQPHPFAHLSALVEIRPGTGGSE 60 Query: 125 AALFVGDLFRMYERYA-ALRKWKVEVLSSSDNDDGG--YKEIVATISGRGVFSRMKFESG 181 A+LF GDL ++Y Y +R W + ++S + +GG +E + + G + + E+G Sbjct: 61 ASLFAGDLLKLYTMYCANIRNWPLSMVSLTAGAEGGDGVQEAIFEVEASGAYEIFRGEAG 120 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAA---------EIDVDIPLEDIRIDTMRASGS 232 VHRVQRVPATE GR HTS V VLP + D I ++D+R+D MRA G+ Sbjct: 121 VHRVQRVPATEKQGRTHTSTVNVVVLPSFPEVQLGEGEEDPDSIIDMKDVRVDVMRARGA 180 Query: 233 GGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVNTTDSAVR+THIPTGI+ +SQH+NR +AM VL++R+ + R E A Sbjct: 181 GGQHVNTTDSAVRMTHIPTGIVAAIQDSRSQHKNRAKAMVVLKSRIAEKRRAEREAEELA 240 Query: 292 NRKLQIG-SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQA 349 R+ + RS+++RTYN+ Q R+TDHR +L+ L + G +D +I+ + Sbjct: 241 LRRSVAKVNAGRSDKMRTYNYIQNRVTDHRCGFSLHDLPSFMNGETLDSMIDRVRKWQME 300 Query: 350 KMIGSA 355 + + + Sbjct: 301 RDVENL 306 >gi|224003217|ref|XP_002291280.1| predicted protein [Thalassiosira pseudonana CCMP1335] gi|220973056|gb|EED91387.1| predicted protein [Thalassiosira pseudonana CCMP1335] Length = 343 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 92/344 (26%), Positives = 157/344 (45%), Gaps = 22/344 (6%) Query: 12 LKNRFAEIELRMSESPSVDAYIK-----LTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +++R ++E S DA +T E + + ++ +++ + + ++ Sbjct: 1 IQSRLQDLETETSSPSFWDASNSDRSEVVTREIGRYTRLKGEMEGWERLRGDALGALELL 60 Query: 67 GD-----------HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 D + E+ L E + +++ E + L D C L+ Sbjct: 61 QDLLDGSSGGDNFEEDEDEMILLTFEECQSSAQKLLEQSQKYELQTLLSGPYDSAQCTLQ 120 Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 + AG GG+EA +V L+RMY R+A +KV VL S D GYK + + G + Sbjct: 121 LTAGAGGTEACDWVSMLYRMYMRHAQFMDYKVTVLEESVGDVVGYKSVELLVEGVNAYGW 180 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAV---LPEAAEIDVDIPLEDIRIDTMRASGS 232 K E G HR+ R+ A+ + T+ A V V L E ++DIP +++ I TMR+ G Sbjct: 181 FKGEKGAHRLVRLSPFNANNKRQTTFAGVDVIPLLEEGTVSEIDIPEKELEITTMRSGGK 240 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQ+VN ++ VR+ HIP+GI + + E+SQ QN+ A+ L+ +L + +++ +A Sbjct: 241 GGQNVNKVETGVRVKHIPSGIAIKCTQERSQSQNKQIALTRLKGQLLVIAQEQQLQSINA 300 Query: 292 NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQG 334 R I +IR Y + D R +E VL G Sbjct: 301 IR-GDIVEASWGAQIRNYVMQPYKMVKDARSGWETSDVEGVLDG 343 >gi|328773067|gb|EGF83104.1| hypothetical protein BATDEDRAFT_85755 [Batrachochytrium dendrobatidis JAM81] Length = 367 Score = 171 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 173/350 (49%), Gaps = 17/350 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 K ++++ +++ R+ + I++ ++ + + I++ S + K E Q Sbjct: 18 KKNWEVVESKASDLRDRLKDDNLWTTDTKEAIEIQKDISRLESEIAEHSKFTVKWNETQS 77 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + + D+ ++++ +++ + L D D C +EIRAG G Sbjct: 78 MIELAKEEGDDTLLKEVVADM-----EDLEAQLRQYFIKSLMTDEVDQSGCYIEIRAGAG 132 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+E+ +V L RMYER+ A + V ++ D G K I G + K ESG Sbjct: 133 GAESCDWVSMLTRMYERWGADQGHTVTSIAQVKGDVAGLKSSTTQIQGDYAYGWSKNESG 192 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLP-----EAAEIDVDIPLEDIRIDTMRASGSGGQH 236 VHR RV +++ + HTS +V VLP + ++I +++++ MRA G+GGQH Sbjct: 193 VHRFVRVSPFDSNAKRHTSFVSVQVLPILSTSRLSTKTIEISTNELKLEFMRAQGAGGQH 252 Query: 237 VNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SAVR+THIPTG + SE+SQ QN+ A+++L+++LY VE +++ ++ + Sbjct: 253 VNKTESAVRMTHIPTGITVFCQSERSQVQNKATALEMLKSKLYQVELDKLSRQKQEHHAN 312 Query: 296 QIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 G IR+Y + + D R ++ VL G + + + L Sbjct: 313 L-GENAWGNHIRSYVLQPYQLVKDTRTGTQTTNVQDVLNGGLQEFMESAL 361 >gi|198421557|ref|XP_002128173.1| PREDICTED: similar to mitochondrial translational release factor 1-like [Ciona intestinalis] Length = 432 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 98/317 (30%), Positives = 169/317 (53%), Gaps = 10/317 (3%) Query: 49 ISIYDQKKQEEQDLHTVIGDHNSDSEI-RDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + +++ + ++ + + SD E+ ++ ++ + + L+ KD++ Sbjct: 110 VETLNERLHDLGEIEKLSKEFKSDEEMFKETEIERRSLEDEISEIKTSIVESLVTDKDSE 169 Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D+ +LE+ G GG EAA+F ++F MY+++ + ++V+ ++G + A + Sbjct: 170 DNDGAVLEVTPGIGGVEAAMFATEIFDMYQKFCHRSGYDLDVVEYDMGENGALVKANAVV 229 Query: 168 S--GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 S +S K E+G+HRVQRVP TE SGR+HTS +VAVLP++ EI + +D++I Sbjct: 230 SSGDGYAYSLFKHEAGIHRVQRVPKTEKSGRLHTSTVSVAVLPKSNEILPPLQRKDLKIT 289 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 ++SG GGQH N+T S + HIPTG +V + Q N RA + L ++ K Sbjct: 290 FSKSSGHGGQHANSTLSCAVVCHIPTGNIVRVEETRCQKTNLDRAQQKLTHIVHSEAMKA 349 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY------IDD 338 + ++ R+ Q S +RS++IRTYNF RITDHRI +TL +E L G + Sbjct: 350 KQAQVNSVRRKQTRSRERSDKIRTYNFHHSRITDHRIGVTLSGIEEFLNGGAVFEKLLYK 409 Query: 339 IINPLLTAHQAKMIGSA 355 + L+ +A +I + Sbjct: 410 LEENSLSEERAAVIQAL 426 >gi|330802966|ref|XP_003289482.1| hypothetical protein DICPUDRAFT_92304 [Dictyostelium purpureum] gi|325080440|gb|EGC33996.1| hypothetical protein DICPUDRAFT_92304 [Dictyostelium purpureum] Length = 226 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 112/223 (50%), Positives = 154/223 (69%), Gaps = 3/223 (1%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY Y + WK E L S ++ GG+++ +ISG+GVF +K+ESGVHRVQRVP TE Sbjct: 1 MYRNYCEQKGWKFETLESQSSEVGGFRDCTISISGKGVFGFLKYESGVHRVQRVPDTETQ 60 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 GR+HTS TVA+LPE E+D+ I DI++D R+SG+GGQ VNTTDSAVR+TH+PTGI+ Sbjct: 61 GRIHTSTITVAILPEPKEVDLQIHDRDIKVDVFRSSGNGGQSVNTTDSAVRMTHLPTGIV 120 Query: 255 V-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 V E+SQ QNR +A+K+LRAR+Y+ ER+R+ +ER R QIG+ RSERIRTYN+ Q Sbjct: 121 VQMQDERSQLQNRAKALKILRARVYEQERQRLHSERERERNSQIGNATRSERIRTYNYPQ 180 Query: 314 GRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 RITDHR+++ L ++ ++ I+ +L Q K + Sbjct: 181 DRITDHRVSIN-GNLSSCMEEEGLEGFIDEILIQFQTKELEEL 222 >gi|331657262|ref|ZP_08358224.1| peptide chain release factor 1 [Escherichia coli TA206] gi|331055510|gb|EGI27519.1| peptide chain release factor 1 [Escherichia coli TA206] Length = 323 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 126/290 (43%), Positives = 190/290 (65%), Gaps = 10/290 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 VQRVPATE+ GR+HTSA TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA Sbjct: 184 VQRVPATESQGRIHTSACTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSA 243 Query: 244 VRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 +RITH+PTG+++ + ++ N +K + + N R Sbjct: 244 IRITHLPTGLLL--NVRTNVHNIKTKLKHFLYSVLASTLLKWQNGNRPKR 291 >gi|258566533|ref|XP_002584011.1| conserved hypothetical protein [Uncinocarpus reesii 1704] gi|237907712|gb|EEP82113.1| conserved hypothetical protein [Uncinocarpus reesii 1704] Length = 412 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 114/381 (29%), Positives = 194/381 (50%), Gaps = 41/381 (10%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + A + ++ V + + ++ + + +D+ ++ +L+ + D + Sbjct: 26 SIAEEHATLSRNLA----VSFETETAKRVGELTLAVQALKEWDKAQETIAELNVLREDSS 81 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D E+R+L ++ + L N++ L+P+ + C++EIR G GG+EA+LF Sbjct: 82 TDHELRELVSEDLETAVSSLPTLSNKLKESLVPRHPFAEFPCLVEIRPGAGGAEASLFAS 141 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGYKE----IVATISGRGVFSRMKFESGVH 183 +L RMY + R ++ +L + GG ++ V I + + E+GVH Sbjct: 142 ELLRMYLAVCSRRGFRTTILKKDTEDGYGSGGSEDLLSEAVVEIETPRSYDIFRTEAGVH 201 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEID------------VDIPLEDIRIDTMRASG 231 RVQR+PATEA GRVHTSA +V +LP E + I ++++ + MRASG Sbjct: 202 RVQRIPATEAKGRVHTSAVSVMILPSFPEQNDGALNFDDPNSDYYINPQEVQSEKMRASG 261 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVR+THIPTG +V +SQH+NR +A ++LR+++ + R+ + Sbjct: 262 AGGQHVNKTESAVRLTHIPTGTVVAVQDTRSQHENRRKAWRLLRSKIAQMRREAREQQLV 321 Query: 291 ANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY------------ 335 R+ +G R +++RTYNF Q R TDHR +T++ L VL+G Sbjct: 322 ELRRGIMGGVAKMGRGDKVRTYNFGQNRCTDHRSGMTIHNLSDVLEGGEGLSRIMESVSN 381 Query: 336 --IDDIINPLLTAHQAKMIGS 354 +D + L Q+K Sbjct: 382 WLVDQEVEALCAEEQSKQQKE 402 >gi|311086739|gb|ADP66820.1| peptide chain release factor 2 [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] Length = 248 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 142/247 (57%), Gaps = 7/247 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D C ++I++G+GG++A + L RMY R+A + + E++ S + G K Sbjct: 1 MFSKKNDHYDCYIDIQSGSGGTDAQDWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG F + E+G+HR+ R ++ R HTS +++ + P+ E D++I Sbjct: 61 SSTIKVSGEYAFGWFRTETGIHRLIRKSPFDSGKRRHTSFSSIFIYPDINEKIDININYS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+PT I+ + +SQH+N+ +AMK ++++LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNRTESAVRITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 ++ ++ E+ K I G+ +IR+Y +I D R + ++ VL G +D Sbjct: 181 IQIRKKQEEKQKIEQNKSDITWGN---QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLD 237 Query: 338 DIINPLL 344 D I L Sbjct: 238 DFIEQSL 244 >gi|319760398|ref|YP_004124336.1| peptide chain release factor 2 [Candidatus Blochmannia vafer str. BVAF] gi|318039112|gb|ADV33662.1| peptide chain release factor 2 [Candidatus Blochmannia vafer str. BVAF] Length = 265 Score = 170 bits (430), Expect = 4e-40, Method: Composition-based stats. Identities = 90/260 (34%), Positives = 148/260 (56%), Gaps = 8/260 (3%) Query: 92 ELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKWKVEVL 150 + +++ + D+ +C ++I++G+GG EA + L RMY ++ + + V+ Sbjct: 4 YIFDKLEMYRMFFQEHDNCNCYVDIQSGSGGIEAQDWANMLLRMYLKWLDSKKGFYVKKT 63 Query: 151 SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE- 209 + + + G K I G + +K ESGVHR+ R ++ GR HTS A++ V PE Sbjct: 64 TETSGEFLGIKSATIKIIGPYAYGWLKTESGVHRLVRKSPFDSGGRRHTSFASIFVYPEL 123 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 I ++I ED+R+D RASG+GGQHVN T+SAVR+THIPT ++ S++SQH+N+ + Sbjct: 124 DDNITINIRPEDLRVDVYRASGAGGQHVNRTESAVRVTHIPTNVVTQCQSDRSQHKNKNQ 183 Query: 269 AMKVLRARLYDVERKR--MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 A+K L+A+LY++E ++ + N+KL I G +IR+Y RI D R L Sbjct: 184 AIKQLKAKLYNLELQKKQYEKKIRENKKLDITWG---SQIRSYILDDSRIKDLRTGLEKR 240 Query: 327 KLEYVLQGYIDDIINPLLTA 346 ++ VL G +DD + + Sbjct: 241 NVKAVLNGDLDDFVTMSIKQ 260 >gi|311086167|gb|ADP66249.1| peptide chain release factor 2 [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] Length = 248 Score = 169 bits (429), Expect = 4e-40, Method: Composition-based stats. Identities = 84/247 (34%), Positives = 142/247 (57%), Gaps = 7/247 (2%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + +D C ++I++G+GG++A + L RMY R+A + + E++ S + G K Sbjct: 1 MFSKKNDHYDCYIDIQSGSGGTDAQDWSKMLLRMYLRWADKKGFHTEIIDESIGEIVGIK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLE 220 +SG F + E+G+HR+ R ++ R HTS +++ + P+ E D++I Sbjct: 61 SSTIKVSGEYAFGWFRTETGIHRLIRKSPFDSGKRRHTSFSSIFIYPDINEKIDININYS 120 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 D+RID RASG+GGQHVN T+SAVRITH+PT I+ + +SQH+N+ +AMK ++++LY+ Sbjct: 121 DLRIDVYRASGAGGQHVNRTESAVRITHLPTNIVTQCQNNRSQHKNKEQAMKQMQSKLYE 180 Query: 280 VERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYID 337 ++ ++ E+ K I G+ +IR+Y +I D R + ++ VL G +D Sbjct: 181 IQMRKKQEEKQKIEQNKSDITWGN---QIRSYILDNSKIKDLRTGVEKNHVQSVLDGDLD 237 Query: 338 DIINPLL 344 D I L Sbjct: 238 DFIEQSL 244 >gi|116198067|ref|XP_001224845.1| hypothetical protein CHGG_07189 [Chaetomium globosum CBS 148.51] gi|88178468|gb|EAQ85936.1| hypothetical protein CHGG_07189 [Chaetomium globosum CBS 148.51] Length = 400 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 112/377 (29%), Positives = 181/377 (48%), Gaps = 34/377 (9%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L ++ + + +S + S + ++ K +L ++ Sbjct: 13 ERARKLAIEHDQLSAALENDFDAKKAKRAG----ELSRVASAVKELEKAKAALVELQGLL 68 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 ++D+E+R+LA+ ++ A ++ E + ++ L PK D C+LEIR G GG E Sbjct: 69 --ESNDAEMRELARDDLEATNAQLAESSHNLSVALTPKHPFADMPCLLEIRPGPGGLEGR 126 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV---------FSRMK 177 F LF+MY+ Y + + ++ ++ +D G I + + + Sbjct: 127 FFADSLFQMYKAYCSNKGYRTRIVQYEASDSDGSTGSEGEIPLQEAVLEVQEEGAYGLFR 186 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI--------------DVDIPLEDIR 223 E+G+HRVQRVPATE SGR HTSA V VLP E D I ++R Sbjct: 187 GEAGMHRVQRVPATEKSGRTHTSAVAVWVLPSFPENGTSDSEADWDKPESDFYIDPNEVR 246 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVER 282 +TMRA G+GGQHVN T+SA+R+THIPTG V+ +SQ +NR A ++LR+RL R Sbjct: 247 SETMRAGGAGGQHVNKTESAIRLTHIPTGTTVSMQDSRSQQRNREDAWRLLRSRLAQQRR 306 Query: 283 KRMANERSANRKL--QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDD 338 + + R R ++IRTY + Q R TDHR L + L VL+G ++ Sbjct: 307 EAREEQARQLRSSVLANSQITRGDKIRTYQYQQDRCTDHRSGLNTHNLPDVLRGGETLEK 366 Query: 339 IINPLLTAHQAKMIGSA 355 +++ + K I + Sbjct: 367 VMDSVQNWLVNKDIEAL 383 >gi|320592214|gb|EFX04653.1| mitochondrial translation release factor [Grosmannia clavigera kw1407] Length = 437 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 193/386 (50%), Gaps = 39/386 (10%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + ++ L +++ + + I + ++ +++ ++ + Sbjct: 36 MPAVLLERARRLAAEHGQLQQSLETEYD----ATAAKRAGEIQGVAQALAEWEEAQRTAE 91 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T+ D E+R LA+ E+ A E + + ++ L PK + C+LE R G Sbjct: 92 ELRTMASAQEEDEELRKLAKDELEATEARLDGVAQQLTTTLTPKHPFGEMPCLLEFRPGP 151 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG---------YKEIVATISGRG 171 GG E F LF MY+ Y + ++ V+ +D G +E V + G Sbjct: 152 GGLEGRFFTDSLFHMYQSYCTRQGYRARVIKYEVSDSLGETGADGESALQEAVLEVQEAG 211 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL---------------PEAAEIDVD 216 + + E+G+HRVQR+PATE +GR HTSAA V VL + E D Sbjct: 212 AYDVFRGEAGIHRVQRIPATEKNGRTHTSAAAVWVLPSFPDSSGEGDSANDYDDPESDFY 271 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRA 275 + D+R++TMRA G+GGQHVN T+SA+R+TH+P+G +V+ +SQHQNR A K+LRA Sbjct: 272 VQPADVRVETMRARGAGGQHVNKTESAIRLTHVPSGTVVSMQDSRSQHQNRDSAWKILRA 331 Query: 276 RLYDVERKRMANERSANR-----KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEY 330 R+ R++ E R K Q+ RS++IRTYN+SQ R+TDHR L ++ L Sbjct: 332 RIAQRRREQREEEARRLRDAVLSKAQV---TRSDKIRTYNYSQDRVTDHRCGLDVHNLPD 388 Query: 331 VLQGY--IDDIINPLLTAHQAKMIGS 354 VL G + I++ + + + + + Sbjct: 389 VLAGGDTLARIVSAVCAWQRDRDVEA 414 >gi|262277365|ref|ZP_06055158.1| peptide chain release factor 2 [alpha proteobacterium HIMB114] gi|262224468|gb|EEY74927.1| peptide chain release factor 2 [alpha proteobacterium HIMB114] Length = 248 Score = 169 bits (428), Expect = 6e-40, Method: Composition-based stats. Identities = 93/242 (38%), Positives = 146/242 (60%), Gaps = 8/242 (3%) Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 D C LE+ AG GG+E+ + + +MY +++ E++S S ++ G K I Sbjct: 6 DKFDCYLEVHAGAGGTESQDWADMIRKMYLKWSEKTDRSCELISESKGEEAGIKSSTIKI 65 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDT 226 G F +K ESGVHR+ R+ +++ R HTS A+V V P +I+++I +D+R+DT Sbjct: 66 GGLNSFGYLKNESGVHRLVRISPFDSNQRRHTSFASVWVYPVIDDKIEIEIKEKDLRVDT 125 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R+SG+GGQHVNTTDSAVRITH+PT I+V +E+SQH+N+ AMK+L++RLY++E K+ Sbjct: 126 YRSSGAGGQHVNTTDSAVRITHLPTKIVVQCQNERSQHKNKDTAMKMLKSRLYELELKKR 185 Query: 286 AN--ERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINP 342 + + + K IG G +IR+Y + + D+R N+ + VL G I + + Sbjct: 186 EESAQSAEDSKTDIGWG---HQIRSYVLQPYQLVKDNRTNVESTSPDDVLNGEIGEFLES 242 Query: 343 LL 344 L Sbjct: 243 AL 244 >gi|300175228|emb|CBK20539.2| unnamed protein product [Blastocystis hominis] Length = 299 Score = 169 bits (427), Expect = 6e-40, Method: Composition-based stats. Identities = 119/299 (39%), Positives = 171/299 (57%), Gaps = 9/299 (3%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + ++ + + + +E I N+ + L +D K+C +E+RAG G Sbjct: 1 MREMLNEEYTHLLQEEEKVLEEANIISLP---SNKYCCITLFTPREDHKNCTIEVRAGAG 57 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+EA LF D+ MY+ Y +L+ WK VLS + GG KE + I+G G F ++ ESG Sbjct: 58 GAEACLFTEDIMNMYKNYCSLKDWKWSVLSCNAPTGGGIKEAIIKITGEGSFGVLRTESG 117 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQRVP TE+ GR+HTS TVAVLPE ++ I D+RID R+SG GGQHVN T+ Sbjct: 118 VHRVQRVPETESQGRIHTSTMTVAVLPEVENMETLIRPSDLRIDLFRSSGKGGQHVNKTE 177 Query: 242 SAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL---QI 297 SAVRITH+PTGI+V+ E++QH N+ +AM++L RL + + E + R+ Sbjct: 178 SAVRITHLPTGIVVSNQDERNQHMNKAKAMQILAIRLQNRQNSLFNEEIDSERRSYPFAF 237 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSA 355 R E+ RTYN+ RITDHRI LTLY ++ ++ G +D+ L K + Sbjct: 238 DWA-RCEKNRTYNYPNSRITDHRIGLTLYGMDKMMNGELLDEFAVALKQWRIEKEFEAL 295 >gi|312082910|ref|XP_003143641.1| peptidyl-tRNA hydrolase domain-containing protein [Loa loa] gi|307761198|gb|EFO20432.1| peptidyl-tRNA hydrolase domain-containing protein [Loa loa] Length = 384 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 103/346 (29%), Positives = 172/346 (49%), Gaps = 8/346 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 + + ++ + ++ +T + + + + K +L ++ + N Sbjct: 28 ISAKLNALQKDGNNESRINDSASIT----HLETVTTLARRFYDKLGMLTELDMLLKEGND 83 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 + + + + ++ + D +C LEI G GG EA+LF + Sbjct: 84 AEIQKIAKLDSEQLTVELDSIVNELTDVVIPVTEYDSLNNCQLEIIPGVGGVEASLFASE 143 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L MY YA KWK + GG + V + G G F +++E+GVHRVQR P T Sbjct: 144 LAEMYHNYAQFMKWKWTPYQVDASPSGGIRSAVVFVRGNGAFRALRYEAGVHRVQRFPVT 203 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + + R+HTS + VAVLPE +I+ + D++++TMRASG GGQ+VN +AVR+TH T Sbjct: 204 DKT-RMHTSTSVVAVLPEPEKIEACVTPADVKVETMRASGPGGQNVNQRSTAVRLTHRET 262 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 GI V E++Q+ N A K L A L + + S++RKLQ+G+ R+E++RTYN Sbjct: 263 GIAVHCVDERTQYSNMEIAYKRLAAILLQRKLDETQKQYSSSRKLQVGTKARAEKVRTYN 322 Query: 311 FSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 F ++ DHR+ + V++G +D II L +A+ + Sbjct: 323 FKDDQVIDHRLGKAWQGVANVMKGSSVLDQIIQSLDELSKAQHLKE 368 >gi|262340849|ref|YP_003283704.1| peptide chain release factor 2 [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272186|gb|ACY40094.1| peptide chain release factor 2 [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 365 Score = 169 bits (427), Expect = 7e-40, Method: Composition-based stats. Identities = 86/351 (24%), Positives = 169/351 (48%), Gaps = 9/351 (2%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 +I +K + + ++ Y K + ++ + + I + + K ++L Sbjct: 17 MHDVLKIDQIKAILDKEQNQILNPNFWKDYKKSKDSIRSLHEMKTSIKDFMKLKNALEEL 76 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + E+ + +L + I + L + +D + IL+I +G GG Sbjct: 77 EIIFSF-----SKEENLEKELEIQFHKTMKLLSNIEFKNLLSEKEDSLNAILQISSGAGG 131 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +E+ + L RMY +A + V+ ++ D G K + I G F +K E+GV Sbjct: 132 TESCDWTSMLMRMYFMWAEKHNFSVKKINFISGDITGIKSVTLEIDGIYAFGYLKGENGV 191 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ R+ +++ + HTS ++V V P + D+DI DI+ +T R+SG+GGQ+VN + Sbjct: 192 HRLIRISPFDSNSKRHTSFSSVYVYPMINDNIDIDIKTSDIQWETFRSSGAGGQNVNKVE 251 Query: 242 SAVRITHIPTGIMVTS-SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 + VR+ H PTGI + + +SQ QNR +A+ +L++RL+++E + ++ + + Sbjct: 252 TGVRLRHHPTGITIENTESRSQMQNRQKALLLLKSRLFEIEMIKKNEKKEKIKSEKKKI- 310 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + +IR Y + + D R +++ V+ G ID + L + K Sbjct: 311 EWGSQIRNYIMHPYKLVKDLRTGYQTTQIQSVMDGEIDTFLKKFLMYKKNK 361 >gi|312891182|ref|ZP_07750704.1| bacterial peptide chain release factor 2 (bRF-2) [Mucilaginibacter paludis DSM 18603] gi|311296349|gb|EFQ73496.1| bacterial peptide chain release factor 2 (bRF-2) [Mucilaginibacter paludis DSM 18603] Length = 286 Score = 169 bits (427), Expect = 8e-40, Method: Composition-based stats. Identities = 77/254 (30%), Positives = 132/254 (51%), Gaps = 8/254 (3%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + +D S +L+I AG GG+E+ + L RMY +A +K+ + + D Sbjct: 30 EFKNMLSAEEDQLSAVLQITAGAGGTESCDWASMLMRMYMMWAQKNGYKITEIDYQEGDV 89 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVD 216 G K + G + +K E+GVHR+ RV +A+ + HTS A+V V P I++D Sbjct: 90 AGVKTVTLQFDGDFSYGYLKGENGVHRLVRVSPFDANAKRHTSFASVYVYPLVDDTINID 149 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRA 275 + DI +T R+ G+GGQ+VN ++AVR+ H P+GI++ +SQ QN+ A+++L++ Sbjct: 150 VNPADIEFETFRSGGAGGQNVNKVETAVRLYHKPSGIIIKNQESRSQLQNKENAIRLLKS 209 Query: 276 RLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVL 332 +LY+ E ++ A K +I G +IR Y + + D R + + VL Sbjct: 210 QLYEAEMRKRMEISDAIEGNKKKIEWG---SQIRNYVLHPYKLVKDLRTDYETSNAQAVL 266 Query: 333 QGYIDDIINPLLTA 346 G +D+ + L Sbjct: 267 DGELDEFLKAYLME 280 >gi|56755637|gb|AAW25997.1| SJCHGC05491 protein [Schistosoma japonicum] Length = 431 Score = 168 bits (426), Expect = 8e-40, Method: Composition-based stats. Identities = 111/372 (29%), Positives = 193/372 (51%), Gaps = 31/372 (8%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD---- 68 +++ +I M+ + L+E + + P++ I D + ++++ ++ D Sbjct: 50 ISKYEDISKLMTSGAGDCDLLSLSESWKKLRPLVDVIEELDILLEADKEVEQLVADIVGT 109 Query: 69 --HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP-KDTDDDKSCILEIRAGTGGSEA 125 + ++++ LA++E LE ++ LLLP D + + I+E+ AG GG EA Sbjct: 110 DAEDDVNDLKALAELEHKQRNILREALEKKLLNLLLPVDQRDLESTVIMELFAGAGGKEA 169 Query: 126 ALFVGDLFRMYERYAALRKWKVEV-------------------LSSSDNDDGGYKEIVAT 166 LF DL MY+ A R W + LS + G + Sbjct: 170 GLFAHDLLIMYQALAIQRNWSFNIKQETVMSSEECTPSHNEKSLSYVRVEIQGEPTAESG 229 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDT 226 I G + ++K+E+GVHRVQRVP T + ++HTS V++ P ++DVDI +D++ + Sbjct: 230 ILSLGAYGQLKWEAGVHRVQRVPVTSSQNKIHTSTVAVSIQPNYGDVDVDISDDDLKWEF 289 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 R +G GGQ++N + SAVR+TH+PTGI+V E+ QH N+ A+ +L+ +L D++ K Sbjct: 290 HRPTGPGGQNLNKSTSAVRLTHLPTGIIVSCQRERHQHTNKKHALGMLKEKLRDIQLKSQ 349 Query: 286 ANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ---GYIDDIINP 342 + + R+ +G+ DRSE+IRTYNF Q RITDHR+ + L ++ G + ++I Sbjct: 350 LHLIDSIRQSHLGNLDRSEKIRTYNFPQDRITDHRLGNSWNNLHRFMKQAVG-LSELIES 408 Query: 343 LLTAHQAKMIGS 354 L + + + Sbjct: 409 LYKQNLVEQLRQ 420 >gi|113475767|ref|YP_721828.1| peptide chain release factor 2 [Trichodesmium erythraeum IMS101] gi|110166815|gb|ABG51355.1| bacterial peptide chain release factor 2 (bRF-2) [Trichodesmium erythraeum IMS101] Length = 288 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 83/258 (32%), Positives = 132/258 (51%), Gaps = 4/258 (1%) Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ L D ++ I AG GG++A + L RMY R+ K+KV++ S+ Sbjct: 25 DQWELQQLLSGLYDQNGAVVTINAGAGGTDAQDWAEMLLRMYTRWGEEHKYKVQLAEISE 84 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI- 213 D+ G K I GR + +K E G HR+ R+ A+G+ TS A V V+P Sbjct: 85 GDEAGLKSATLEIIGRYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEVMPILDHSV 144 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++DIP +D+ I T R+ G GGQ+VN ++AVR+ HIPTG+ V + E+SQ QN+ +A+ + Sbjct: 145 ELDIPEKDLEITTSRSGGKGGQNVNKVETAVRVVHIPTGLSVRCTQERSQLQNKDKALAL 204 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 L+ARL + +++ A E + R + +IR Y F + + D R + V Sbjct: 205 LKARLLIIAQEQRAQEINEIRGDMVE-AAWGNQIRNYVFHPYQMVKDLRTQKETTAINDV 263 Query: 332 LQGYIDDIINPLLTAHQA 349 + G +D I L Sbjct: 264 MNGELDQFIEAYLRQENQ 281 >gi|227535953|ref|ZP_03966002.1| peptide chain release factor RF2 [Sphingobacterium spiritivorum ATCC 33300] gi|300771659|ref|ZP_07081534.1| peptide chain release factor RF2 [Sphingobacterium spiritivorum ATCC 33861] gi|227244196|gb|EEI94211.1| peptide chain release factor RF2 [Sphingobacterium spiritivorum ATCC 33300] gi|300761648|gb|EFK58469.1| peptide chain release factor RF2 [Sphingobacterium spiritivorum ATCC 33861] Length = 283 Score = 168 bits (426), Expect = 9e-40, Method: Composition-based stats. Identities = 78/254 (30%), Positives = 131/254 (51%), Gaps = 8/254 (3%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + + +D IL+I AG GG+E+ + L RMY + KV S + D Sbjct: 30 EFKNMLSAEEDQLDAILQITAGAGGTESCDWAAMLMRMYIMWGEKHGCKVTEQDSQEGDV 89 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVD 216 G K + SG + +K E+GVHR+ R+ +++ + HTS A+V V P I++D Sbjct: 90 AGIKTVTLQFSGNFAYGYLKGENGVHRLVRISPFDSNAKRHTSFASVYVYPLIDDNIEID 149 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRA 275 + +I DT R+ G+GGQ+VN ++AVR+ H PTGI++ +SQ QN+ A+++L++ Sbjct: 150 VKDSEIEWDTFRSGGAGGQNVNKVETAVRLHHKPTGIIIKNQETRSQLQNKENALRLLKS 209 Query: 276 RLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVL 332 +LY++E ++ + K +I G +IR Y + + D R ++ + VL Sbjct: 210 QLYEIEMRKRQEATAVIEGSKKKIEWG---SQIRNYVLHPYKLVKDLRTSVETSNTQAVL 266 Query: 333 QGYIDDIINPLLTA 346 G ID + L Sbjct: 267 DGDIDMFLKAYLME 280 >gi|25453244|sp|P59102|RF2_BUCAP RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 364 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 96/337 (28%), Positives = 182/337 (54%), Gaps = 15/337 (4%) Query: 15 RFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R EI+L +S + L +E ++ II+KI+ ++ +E + + Sbjct: 32 RILEIDLELSSTEIWKKKEYVHNLNKEKNLLNIIINKINNIEKNIKEMIIFLDLAIETKD 91 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 ++ I+++++ EK + + + + D +C ++++AG+GG +A + Sbjct: 92 NAIIQEISEEIKKIAEKIQE-----LEFYRMFSNQHDHCNCYIDVQAGSGGVDAQDWSKI 146 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY +++ + +K E++ S + G K +SG+ F ++ E+G+HR+ R Sbjct: 147 LLRMYLKWSDKKGFKTEIIEESTGEIVGIKSSTIKVSGQYAFGWLRTETGIHRLIRKSPF 206 Query: 192 EASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 ++ R HTS +++ + P+ + +++I D+RID RASG+GGQHVN T+SAVRITH+P Sbjct: 207 DSGKRRHTSFSSIFIYPDIEDKINIEINPSDLRIDVYRASGAGGQHVNRTESAVRITHLP 266 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIR 307 T I+ + +SQH+N+ +A+K ++++LY+++ K ++ K I G+ +IR Sbjct: 267 TNIVTQCQNNRSQHKNKEQAIKQMKSKLYEMKIKEKKEKQKKIEKNKSDISWGN---QIR 323 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 +Y +I D R + Y ++ VL G +DD I L Sbjct: 324 SYILDNSKIKDLRTGVEKYNVQSVLDGDLDDFIEQSL 360 >gi|297304301|ref|XP_001086824.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like, partial [Macaca mulatta] Length = 346 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 101/210 (48%), Positives = 140/210 (66%), Gaps = 3/210 (1%) Query: 148 EVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL 207 + L ++ GG + A+I G + MKFE GVHRVQRVP T+ GR+HTS TVA+L Sbjct: 131 QDLEYFPSEIGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTQKQGRIHTSTMTVAIL 190 Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P+ EI++ I +D+RIDT +ASG+GGQHVNTTDSAVRI H+PT ++ E+SQ +NR Sbjct: 191 PQPTEINLVINPKDLRIDTKQASGAGGQHVNTTDSAVRIVHLPTSVVSKCQQERSQLKNR 250 Query: 267 LRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLY 326 AM LRA+LY + ++ N+R RK++IGS RSE+IRTYNF Q R+TDHRI+ TL+ Sbjct: 251 ELAMTKLRAKLYSMHLEKETNKRQNARKIRIGSKGRSEKIRTYNFPQNRVTDHRISKTLH 310 Query: 327 KLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 LE +QG +D+++ L + + Sbjct: 311 DLETFMQGDDLLDELVQSLKEYADYESLVE 340 >gi|222100137|ref|YP_002534705.1| Peptide chain release factor 2 [Thermotoga neapolitana DSM 4359] gi|221572527|gb|ACM23339.1| Peptide chain release factor 2 [Thermotoga neapolitana DSM 4359] Length = 218 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 82/209 (39%), Positives = 125/209 (59%), Gaps = 4/209 (1%) Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 R+A + + VE++ ++ G K+ I G + +K ESGVHR+ R+ +A+ R Sbjct: 1 MRWAERKGFDVEIVEYQPGEEAGIKDATILIKGEYAYGYLKHESGVHRLVRISPFDAARR 60 Query: 197 VHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A+V V+PE + ++I ED++I+T RASG GGQHVN T+SAVRITHIPTGI+V Sbjct: 61 RHTSFASVNVIPEIEDDVHIEIKPEDLKIETFRASGHGGQHVNKTESAVRITHIPTGIVV 120 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 +E+SQHQN+ A+K+L+ARLY +E ++ E + ++ +IR+Y F Sbjct: 121 TCQNERSQHQNKQTALKILKARLYQLELEKKRKEIQEI-QGELKDISWGNQIRSYVFHPY 179 Query: 315 -RITDHRINLTLYKLEYVLQGYIDDIINP 342 + DHR + ++ V+ G ID I Sbjct: 180 TLVKDHRTGVETSNVDAVMDGDIDIFIEA 208 >gi|324506204|gb|ADY42656.1| Peptide chain release factor 1 [Ascaris suum] Length = 376 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 115/319 (36%), Positives = 184/319 (57%), Gaps = 6/319 (1%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 +++ + ++ E L+ ++ SD E+ +A+ E + +E E+ +L I ++ Sbjct: 51 QNLLTLSKEFIMRRDELLQLNALMS-AESDVELETMARNERVLLESELNDLARNIVDAVM 109 Query: 103 PKDT-DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 P+ D C LE+ AG GG EA LF +L MY +AA + W V+ + GG + Sbjct: 110 PRTELDVLSKCQLEVTAGVGGIEAMLFTSELVDMYRNFAAFKGWTWTVMQQDNIQLGGVR 169 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED 221 + +SG + R++FE+GVHRVQR+P T+ + R+HTS A+V+VLPE ++D +P Sbjct: 170 SALIAVSGDEAYGRLRFEAGVHRVQRMPITDKT-RMHTSTASVSVLPEPEKVDAYVPSNS 228 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 ++I+TMRASG GGQ+VN +AVR+TH +GI V E+ QH N A + L A L Sbjct: 229 VKIETMRASGPGGQNVNKRSTAVRVTHKSSGISVHCMDERFQHLNIQIAFRRLAAILMQE 288 Query: 281 ERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDD 338 + R+ + +A RKLQ+GS R+E++RTYNF R+TDHR+ + ++ V++G +D Sbjct: 289 KMDRIYEKSAAARKLQVGSKARAEKVRTYNFKDDRVTDHRLKKSWSRVTDVMRGGHELDA 348 Query: 339 IINPLLTAHQAKMIGSASE 357 IIN L ++ + E Sbjct: 349 IINELSDDYKWGRLEEIIE 367 >gi|67526009|ref|XP_661066.1| hypothetical protein AN3462.2 [Aspergillus nidulans FGSC A4] gi|40743816|gb|EAA63002.1| hypothetical protein AN3462.2 [Aspergillus nidulans FGSC A4] Length = 367 Score = 168 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 114/346 (32%), Positives = 188/346 (54%), Gaps = 24/346 (6%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L A + +++ S K+ + P+ + + + +LH+++ D + Sbjct: 19 NLAAEHANLSNQLTTSFDP----KIARRAGELGPVAKAWAEWSNANESMSELHSMLEDPD 74 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +++E+R +A E+ E ++ + + + L+P+ D SC+LEIR G GG EA++F Sbjct: 75 TEAELRSIAVEELQTTEAKLTAISDNLKRALVPRHPFADLSCLLEIRPGAGGDEASIFAF 134 Query: 131 DLFRMYERYAALRKWKVEVLSSSDND--DGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L +MY + A + + ++ D E V + G + ++ ESGVHRVQRV Sbjct: 135 ELLQMYVAFCAHQGLRSTLMKLERGDNRADALTEAVLEVEAEGAYDLLRTESGVHRVQRV 194 Query: 189 PATEASGRVHTSAATVAVLPEAA--------------EIDVDIPLEDIRIDTMRASGSGG 234 P TEA GR HTSA +V VLP D I +++R + MRASG+GG Sbjct: 195 PTTEAKGRTHTSAVSVMVLPSFPDTGGGDGAFNFDDPNSDYYIDPQEVRTEKMRASGAGG 254 Query: 235 QHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN T+SA+R+TH+PTGI+V+ +SQH NR +A ++LRA+L + ++ E R Sbjct: 255 QHVNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRAKLAEARQEAREQELVELR 314 Query: 294 KLQIGSGDRS---ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI 336 + +G R +++RTYN+ Q R TDHR T++ L+ VL+G + Sbjct: 315 RGAMGGIGRMGRGDKVRTYNYGQSRCTDHRSGFTVHNLDNVLEGVL 360 >gi|121591760|ref|ZP_01678968.1| peptide chain release factor 1 [Vibrio cholerae 2740-80] gi|121546377|gb|EAX56631.1| peptide chain release factor 1 [Vibrio cholerae 2740-80] Length = 242 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 109/244 (44%), Positives = 160/244 (65%), Gaps = 6/244 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG GG EA +F GDLFRMY R+A + W++EV+SSS+ + GGYKE++A ++G G + +K Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKEMIAKVNGDGAYGTLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATEA GR+HTSA TVAV+PE E + +I D++IDT R+SG+GGQH Sbjct: 179 FESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASDLKIDTFRSSGAGGQH 238 Query: 237 VNTT 240 VNTT Sbjct: 239 VNTT 242 >gi|146300308|ref|YP_001194899.1| peptide chain release factor 2 [Flavobacterium johnsoniae UW101] gi|146154726|gb|ABQ05580.1| bacterial peptide chain release factor 2 (bRF-2) [Flavobacterium johnsoniae UW101] Length = 254 Score = 168 bits (424), Expect = 2e-39, Method: Composition-based stats. Identities = 81/241 (33%), Positives = 132/241 (54%), Gaps = 8/241 (3%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 S +++I AG GG+E+ + G L RMY + +K++ L+ + D G K + G Sbjct: 10 SAVVQITAGAGGTESCDWAGMLMRMYMMWGESYGYKIKELNFQEGDVAGIKTVTLEFEGD 69 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRA 229 F +K E+GVHR+ R+ +++ + HTS +V V P I++DI DI I T R+ Sbjct: 70 YSFGYLKGENGVHRLVRISPFDSNAKRHTSFVSVYVYPLVDDSIEIDINPADIEITTSRS 129 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG+GGQ+VN ++ V++ H PTGI + S +SQ NR RAM++LR++LY++E K+ + Sbjct: 130 SGAGGQNVNKVETKVQLVHKPTGIQIQCSETRSQQDNRQRAMQMLRSQLYEIELKKQQAQ 189 Query: 289 RSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 R+ K++I G +IR Y + + D R ++ V+ G ID + L Sbjct: 190 RADIEAGKMKIEWG---SQIRNYVMQPYKLVKDVRTGYETSDVDGVMNGNIDAFLKAYLM 246 Query: 346 A 346 Sbjct: 247 M 247 >gi|170595371|ref|XP_001902354.1| Peptidyl-tRNA hydrolase domain containing protein [Brugia malayi] gi|158590015|gb|EDP28797.1| Peptidyl-tRNA hydrolase domain containing protein [Brugia malayi] Length = 382 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 104/348 (29%), Positives = 176/348 (50%), Gaps = 8/348 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + ++ ++ + ++ +T + + + + K + L ++ + Sbjct: 26 EVIFSKLKALQKDGKDESRINNSALVT----HLETVTTLAHKFYDKLEMLTQLDLLLKEG 81 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 N E+ + + ++ + D +C LEI G GG EA+LF Sbjct: 82 NDPEIQEIAKLDSEQLTEELDSVVNKLTDVVIPVTEYDLLNNCQLEITPGVGGVEASLFA 141 Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 +L +MY YA KWK + GG + V + G G F +++E+GVHRVQR P Sbjct: 142 SELAQMYHNYAQFMKWKWTPYQMDVSPSGGIRSAVVFVRGNGAFRTLRYEAGVHRVQRFP 201 Query: 190 ATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 T+ + R+HTS + VAVLPE +I+ + D++++TMRASG GGQ+VN +AVR+TH Sbjct: 202 VTDKT-RMHTSTSVVAVLPEPDKIEACVTPADVKVETMRASGPGGQNVNQRSTAVRLTHR 260 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 TG+ V + E++Q+ N A K L A L + + S++RKLQIG+ R+E++RT Sbjct: 261 ETGVTVHCTDERTQYSNMEIAYKRLAAILLQRKLDETQKQYSSSRKLQIGTKARAEKVRT 320 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 YNF ++TDHR+ + V++G ++ II L +A+ + Sbjct: 321 YNFKDDQVTDHRLGRAWQGVANVMKGNSVLNQIIQSLDELSKAQYLKE 368 >gi|259485545|tpe|CBF82657.1| TPA: mitochondrial translation release factor (RF-1), putative (AFU_orthologue; AFUA_3G05410) [Aspergillus nidulans FGSC A4] Length = 418 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 114/358 (31%), Positives = 193/358 (53%), Gaps = 26/358 (7%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 +L A + +++ S K+ + P+ + + + +LH+++ D + Sbjct: 47 NLAAEHANLSNQLTTSFDP----KIARRAGELGPVAKAWAEWSNANESMSELHSMLEDPD 102 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +++E+R +A E+ E ++ + + + L+P+ D SC+LEIR G GG EA++F Sbjct: 103 TEAELRSIAVEELQTTEAKLTAISDNLKRALVPRHPFADLSCLLEIRPGAGGDEASIFAF 162 Query: 131 DLFRMYERYAALRKWKVEVLSSSDND--DGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L +MY + A + + ++ D E V + G + ++ ESGVHRVQRV Sbjct: 163 ELLQMYVAFCAHQGLRSTLMKLERGDNRADALTEAVLEVEAEGAYDLLRTESGVHRVQRV 222 Query: 189 PATEASGRVHTSAATVAVLPEAA--------------EIDVDIPLEDIRIDTMRASGSGG 234 P TEA GR HTSA +V VLP D I +++R + MRASG+GG Sbjct: 223 PTTEAKGRTHTSAVSVMVLPSFPDTGGGDGAFNFDDPNSDYYIDPQEVRTEKMRASGAGG 282 Query: 235 QHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 QHVN T+SA+R+TH+PTGI+V+ +SQH NR +A ++LRA+L + ++ E R Sbjct: 283 QHVNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRAKLAEARQEAREQELVELR 342 Query: 294 KLQIGSGDRS---ERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTA 346 + +G R +++RTYN+ Q R TDHR T++ L+ VL+G + +++ + + Sbjct: 343 RGAMGGIGRMGRGDKVRTYNYGQSRCTDHRSGFTVHNLDNVLEGGETLVKVMDSVRSW 400 >gi|194705206|gb|ACF86687.1| unknown [Zea mays] gi|195648693|gb|ACG43814.1| hypothetical protein [Zea mays] Length = 230 Score = 166 bits (421), Expect = 4e-39, Method: Composition-based stats. Identities = 105/223 (47%), Positives = 150/223 (67%), Gaps = 2/223 (0%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY+RY WK + +S S+ + GGYK V + G+ V+S++KFESGVHRVQRVP TEA Sbjct: 1 MYQRYCERNNWKFKPVSCSEAEMGGYKTYVMEVKGKQVYSKLKFESGVHRVQRVPLTEAM 60 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI- 253 GRVHTS ATVA++PEA E+DV I +DI + T R+ G+GGQ+VN ++AV + H PTGI Sbjct: 61 GRVHTSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIR 120 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQ 313 + + E+SQ QNR RA ++LRA+LY+++ + RKLQ+G+G RSE+IRTYN+ Sbjct: 121 IFCTEERSQLQNRERAFQLLRAKLYEIKLREQQESLRNQRKLQVGTGARSEKIRTYNYKD 180 Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 R+TDHR+ + ++L L G I+ I T Q +++ + Sbjct: 181 NRVTDHRLKMN-FELTSFLLGDIESAIQSCATMEQQELLEEMA 222 >gi|303279527|ref|XP_003059056.1| predicted protein [Micromonas pusilla CCMP1545] gi|226458892|gb|EEH56188.1| predicted protein [Micromonas pusilla CCMP1545] Length = 337 Score = 166 bits (420), Expect = 4e-39, Method: Composition-based stats. Identities = 87/335 (25%), Positives = 146/335 (43%), Gaps = 13/335 (3%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS---IYDQKKQEEQDLHTVIG 67 L+ A+++ R SE+ D ++ + ++ ++ K + + +I Sbjct: 5 SLRAMLADLDKRASEATLWDDPKNAKAVMEQLADVREQLELAAAFEDKLGDARTALEMIA 64 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 D S + +LA AI LE L T D + I AG GG +A Sbjct: 65 DDPSSDVVPELASEISDAIASLEAALET-WETRRLLVGTYDALGATVFINAGFGGFDAHE 123 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L Y +A R + V V + + ++ G + + I GR + + E G HR+ R Sbjct: 124 WAERLESCYVAWARRRGFAVRVEARTPGEEVGLRSVTLEIDGRFAYGYLASEKGAHRMVR 183 Query: 188 VPATEAS--GRVHTSAATVAVLPEAAEIDVDIPLEDI----RIDTMRASGSGGQHVNTTD 241 + H++ V V P E I I TMR+ G+GGQ+VN + Sbjct: 184 IGGVAGQTPRGRHSNFVAVDVAPTLEEKARSIHWSPYDRVRVITTMRSGGAGGQNVNKVE 243 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +AVR+ H+PTGI+V E+SQ NR +A+ L+A+L V +R + +A R + Sbjct: 244 TAVRMKHLPTGIVVRCEEERSQAMNRAKAIARLKAKLAAVAEERRLADVAAVR-GDVVRA 302 Query: 301 DRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQG 334 +R ++IR Y + + D R + ++ VL G Sbjct: 303 ERGQQIRNYVLHPYKLVKDVRTGVETSDVDGVLSG 337 >gi|216264821|ref|ZP_03436813.1| peptide chain release factor 2 [Borrelia burgdorferi 156a] gi|226320754|ref|ZP_03796310.1| peptide chain release factor 2 [Borrelia burgdorferi 29805] gi|215981294|gb|EEC22101.1| peptide chain release factor 2 [Borrelia burgdorferi 156a] gi|226233809|gb|EEH32534.1| peptide chain release factor 2 [Borrelia burgdorferi 29805] Length = 269 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 98/269 (36%), Positives = 151/269 (56%), Gaps = 9/269 (3%) Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + ++ + K+ D + L I +G GG+EA +V L+RMY RYA Sbjct: 1 MEIEFNTLEKQYKDLLTISYFKEELDANNAFLTIHSGAGGTEACDWVAMLYRMYSRYAER 60 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K+K E++ + + GG K + I G + +K E G+HR+ R+ +A+ + HTS A Sbjct: 61 KKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRISPFDAAKKRHTSFA 119 Query: 203 TVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITHI TGI+ + S++ Sbjct: 120 SVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAVRITHIETGIVTQSQSDR 179 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQH+N+ AMKVL++RLY+ + + + + + K +I G+ +IR+Y F + Sbjct: 180 SQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---QIRSYVFQPYNLVK 236 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR V+ G ID+ I L Sbjct: 237 DHRTKFENSNTTSVMDGNIDNFIEEYLKW 265 >gi|270285531|ref|ZP_06194925.1| peptide chain release factor 2 [Chlamydia muridarum Nigg] gi|301336928|ref|ZP_07225130.1| peptide chain release factor 2 [Chlamydia muridarum MopnTet14] Length = 220 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 89/219 (40%), Positives = 124/219 (56%), Gaps = 9/219 (4%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A WKVEV+ D + G K I + G + K ESGVHR+ R+ +++ Sbjct: 1 MYSRWANSHGWKVEVIDRLDGEVAGIKHITLKLIGEYAYGYAKAESGVHRLVRISPFDSN 60 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI Sbjct: 61 AKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGI 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTYN 310 +V SE+SQ QNR M +LRAR+Y + +++ NRK +I G +IR Y Sbjct: 121 VVSCQSERSQIQNREACMNMLRARIYQKLLQERLEKQNTNRKEKKEISWG---SQIRNYV 177 Query: 311 FSQG-RITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 F + D R + ++ ++ G +D I L + Sbjct: 178 FQPYTLVKDVRTGYEVGNIQAMMDGELLDAFIKAYLADY 216 >gi|218249952|ref|YP_002374604.1| peptide chain release factor 2 [Borrelia burgdorferi ZS7] gi|223889107|ref|ZP_03623696.1| peptide chain release factor 2 [Borrelia burgdorferi 64b] gi|224533928|ref|ZP_03674513.1| peptide chain release factor 2 [Borrelia burgdorferi CA-11.2a] gi|226322014|ref|ZP_03797539.1| peptide chain release factor 2 [Borrelia burgdorferi Bol26] gi|218165140|gb|ACK75201.1| peptide chain release factor 2 [Borrelia burgdorferi ZS7] gi|223885356|gb|EEF56457.1| peptide chain release factor 2 [Borrelia burgdorferi 64b] gi|224512931|gb|EEF83297.1| peptide chain release factor 2 [Borrelia burgdorferi CA-11.2a] gi|226232604|gb|EEH31358.1| peptide chain release factor 2 [Borrelia burgdorferi Bol26] Length = 282 Score = 166 bits (420), Expect = 5e-39, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 16/286 (5%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++ D+ ++ + K++ + L + L I +G GG+EA Sbjct: 4 IAENEKDTSGLEIEFNTLEKQYKDLLTISYFKEELDA-------NNAFLTIHSGAGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +V L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ Sbjct: 57 CDWVAMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRL 115 Query: 186 QRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAV Sbjct: 116 IRISPFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAV 175 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGD 301 RITHI TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ Sbjct: 176 RITHIETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN 235 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR V+ G ID+ I L Sbjct: 236 ---QIRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 278 >gi|225552175|ref|ZP_03773115.1| peptide chain release factor 2 [Borrelia sp. SV1] gi|225371173|gb|EEH00603.1| peptide chain release factor 2 [Borrelia sp. SV1] Length = 282 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 154/286 (53%), Gaps = 16/286 (5%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++ D+ ++ + K++ + L + L I +G GG+EA Sbjct: 4 IAENEKDTSGLEIEFNTLEKQYKDLLTISYFKEELDA-------NNAFLTIHSGAGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +V L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ Sbjct: 57 CDWVAMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRL 115 Query: 186 QRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAV Sbjct: 116 IRISPFDADKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAV 175 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGD 301 RITHI TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ Sbjct: 176 RITHIETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKNKEDEKNKSKQDTKKEISWGN 235 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR V+ G ID+ I L Sbjct: 236 ---QIRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 278 >gi|195941813|ref|ZP_03087195.1| peptide chain release factor 2 [Borrelia burgdorferi 80a] Length = 282 Score = 166 bits (419), Expect = 7e-39, Method: Composition-based stats. Identities = 100/286 (34%), Positives = 155/286 (54%), Gaps = 16/286 (5%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 I ++ D+ ++ + K++ + L + L I +G GG+EA Sbjct: 4 IAENEKDTNGLEIEFNTLEKQYKDLLTISYFKEELDA-------NNAFLTIHSGAGGTEA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 +V L+RMY RYA +K+K E++ + + GG K + I G + +K E G+HR+ Sbjct: 57 CDWVAMLYRMYSRYAERKKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRL 115 Query: 186 QRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +A+ + HTS A+V V +I++ I EDIRIDT RASG+GGQHVN T SAV Sbjct: 116 IRISPFDAAKKRHTSFASVFVDPVIDDKIEIIIKPEDIRIDTYRASGAGGQHVNKTSSAV 175 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGD 301 RITHI TGI+ + S++SQH+N+ AMKVL++RLY+ + + + + + K +I G+ Sbjct: 176 RITHIETGIVTQSQSDRSQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN 235 Query: 302 RSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y F + DHR V+ G ID+ I L Sbjct: 236 ---QIRSYVFQPYNLVKDHRTKFENSNTTSVMDGNIDNFIEEYLKW 278 >gi|224533030|ref|ZP_03673636.1| peptide chain release factor 2 [Borrelia burgdorferi WI91-23] gi|224512024|gb|EEF82419.1| peptide chain release factor 2 [Borrelia burgdorferi WI91-23] Length = 269 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 98/269 (36%), Positives = 151/269 (56%), Gaps = 9/269 (3%) Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + + + ++ + K+ D + L I +G GG+EA +V L+RMY RYA Sbjct: 1 MEIEFNTLEKQYKDLLTISYFKEELDANNAFLTIHSGAGGTEACDWVAMLYRMYSRYAER 60 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 +K+K E++ + + GG K + I G + +K E G+HR+ R+ +A+ + HTS A Sbjct: 61 KKYKTELIDLLEAE-GGIKSVTIEIKGEYAYGLLKSEVGIHRLIRISPFDAAKKRHTSFA 119 Query: 203 TVAV-LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 +V V +I++ I EDIRIDT RASG+GGQHVN T SAVRITHI TGI+ + S++ Sbjct: 120 SVFVDPVIDDKIEITIKPEDIRIDTYRASGAGGQHVNKTSSAVRITHIETGIVTQSQSDR 179 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG-RIT 317 SQH+N+ AMKVL++RLY+ + + + + + K +I G+ +IR+Y F + Sbjct: 180 SQHKNKDLAMKVLKSRLYEYYKSKEDEKNKSKQDTKKEISWGN---QIRSYVFQPYNLVK 236 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTA 346 DHR V+ G ID+ I L Sbjct: 237 DHRTKFENSNTTSVMDGNIDNFIEEYLKW 265 >gi|71008811|ref|XP_758238.1| hypothetical protein UM02091.1 [Ustilago maydis 521] gi|46097913|gb|EAK83146.1| hypothetical protein UM02091.1 [Ustilago maydis 521] Length = 526 Score = 165 bits (418), Expect = 7e-39, Method: Composition-based stats. Identities = 128/377 (33%), Positives = 216/377 (57%), Gaps = 35/377 (9%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 ++ L R + + + + VD+ + ++ + P+ + K+++ ++ Sbjct: 131 RLAQL--RIEKRQRLLELTDGVDSA-DIGKQLKELDPLRQAWDKFSAKRKQLISTISI-S 186 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK----SCILEIRAGTGGS 123 ++ D ++R LA E+L +E+E+ EL +++ L+L TD + +LE+R G GG Sbjct: 187 QNDPDEDMRALASEEILLLEEELLELRSDMQELILESVTDPIEAKAVGAVLEVRPGVGGQ 246 Query: 124 EAALFVGDLFRMYERYAALR--------KWKVEVLSSSDNDDGG--------YKEIVATI 167 E+ LF ++ RMY+R+ + +W+VE+LSS+ D KE + + Sbjct: 247 ESTLFTAEVARMYQRFCEQKPVEEDGSGEWQVEMLSSTSVDVSTSSSGSGSGLKEAIIEV 306 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA----EIDVDIPLEDIR 223 G+GVF ++K+E+GVHRVQR+P+T++ G++ TS V VLP + + D + +D++ Sbjct: 307 KGKGVFKKLKYEAGVHRVQRIPSTQSLGKLQTSTIAVMVLPISEGSEHKADDLVDPKDVK 366 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVER 282 ++ MR+ G+GGQHVN T+SA+R+TH PTGI V+ +SQHQNR +A VLRARL D Sbjct: 367 VEVMRSRGAGGQHVNKTESAIRLTHEPTGISVSMQDSRSQHQNRTKAWAVLRARLLDRRL 426 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY------I 336 K+ R Q+ S DRS+R+RTYNF Q R+TDHRINL+L ++ +++G + Sbjct: 427 KQEVEGNRERRLAQVASMDRSDRVRTYNFPQDRVTDHRINLSLNGIDAIMEGEHDPGTGL 486 Query: 337 DDIINPLLTAHQAKMIG 353 D I+ L +A+ + Sbjct: 487 DYIMESLRVESEARKVK 503 >gi|308478247|ref|XP_003101335.1| hypothetical protein CRE_13471 [Caenorhabditis remanei] gi|308263236|gb|EFP07189.1| hypothetical protein CRE_13471 [Caenorhabditis remanei] Length = 390 Score = 165 bits (418), Expect = 8e-39, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 16/349 (4%) Query: 9 ICDLKNRFAEIEL--RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + R E + + + + + ++ A +S S++ + + ++ + Sbjct: 43 LKTVIERLKECQEGNASAAPEQISYWEAIAKQAAIVSDTRSELFQLNSIINDLKETEEMR 102 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E E EL+ ++ + D C +E+ +G GG EA Sbjct: 103 KLAEGDVESIK---------ETLESELQVLATRVVPLNNLDVLSKCQIELSSGAGGQEAM 153 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF G+L MY++ AA WK + L + GG + + +SG V+++M+FE+GVHRVQ Sbjct: 154 LFTGELLDMYQKLAASNSWKWDPLQVDNVPLGGVRSALIAVSGENVYAKMRFEAGVHRVQ 213 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP ++ R+HTS ++++VLPE E+ V +P + ++I+ MRASG GGQ+VN +AVR+ Sbjct: 214 RVPVNDS--RMHTSTSSISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRM 271 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH TGI V E+ QH N A K L A L + M + + RKLQ+GS R+E+ Sbjct: 272 THKETGIAVHCMDERFQHLNIQIAYKRLAAILMQRQVDAMLEKIVSRRKLQVGSKARAEK 331 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVL-QGY-IDDIINPLLTAHQAKMI 352 IRTYNF ++TDHRI + + ++ L G + +I+ L H + Sbjct: 332 IRTYNFQHDKVTDHRIQMAITGVDEFLSAGETLHAMIDRLQEQHMEDRL 380 >gi|308454222|ref|XP_003089760.1| hypothetical protein CRE_07913 [Caenorhabditis remanei] gi|308269005|gb|EFP12958.1| hypothetical protein CRE_07913 [Caenorhabditis remanei] Length = 390 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 16/349 (4%) Query: 9 ICDLKNRFAEIEL--RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + R E + + + + + ++ + +S S++S + + ++ + Sbjct: 43 LKTVIERLKECQEGNASAAPEQISYWEAIAKQASIVSDTRSELSQLNSIINDLKETEEMR 102 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D E E EL+ ++ + D C +E+ +G GG EA Sbjct: 103 KLAEGDVESIK---------ETLESELQELATRVVPLNNLDVLSKCQIELSSGAGGQEAM 153 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF G+L MY++ AA WK + L + GG + + +SG V+++M+FE+GVHRVQ Sbjct: 154 LFTGELLDMYQKLAASNSWKWDPLQVDNVPLGGVRSALIAVSGENVYAKMRFEAGVHRVQ 213 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP ++ R+HTS ++++VLPE E+ V +P + ++I+ MRASG GGQ+VN +AVR+ Sbjct: 214 RVPVNDS--RMHTSTSSISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRM 271 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH TGI V E+ QH N A K L A L + M + + RKLQ+GS R+E+ Sbjct: 272 THKETGIAVHCMDERFQHLNIQIAYKRLAAILMQRQVDAMLEKIVSRRKLQVGSKARAEK 331 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVL-QGY-IDDIINPLLTAHQAKMI 352 IRTYNF ++TDHRI + + + L G + +I+ L H + Sbjct: 332 IRTYNFQHDKVTDHRIQMAITGVNEFLSAGETLHAMIDRLQEQHMEDRL 380 >gi|224532320|ref|ZP_03672952.1| peptide chain release factor 2 [Borrelia valaisiana VS116] gi|224511785|gb|EEF82191.1| peptide chain release factor 2 [Borrelia valaisiana VS116] Length = 269 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 143/250 (57%), Gaps = 9/250 (3%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 K+ D L I +G GG+EA +V L+RMY RY +K+K E++ + + GG K Sbjct: 20 YFKEELDANGAFLTIHSGAGGTEACDWVAMLYRMYSRYVERKKYKTELIDLLEAE-GGIK 78 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLE 220 + I G + +K E G+HR+ R+ +A+ + HTS A+V V +I++ I E Sbjct: 79 SVTIEIKGEYAYGLLKSEVGIHRLIRISPFDAAKKRHTSFASVFVDPVIDEKIEIIIKPE 138 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 DIRIDT RASG+GGQHVN T SAVRITHI TGI+ + S++SQH+N+ AMKVL++RLY+ Sbjct: 139 DIRIDTYRASGAGGQHVNKTSSAVRITHIETGIVTQSQSDRSQHKNKEMAMKVLKSRLYE 198 Query: 280 VERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYI 336 + + + + + K +I G+ +IR+Y F + DHR V+ G I Sbjct: 199 YYKNKEDEKNKSKQDTKKEISWGN---QIRSYVFQPYNLVKDHRTKFENSNTTSVMDGNI 255 Query: 337 DDIINPLLTA 346 D+ I L Sbjct: 256 DNFIEEYLKW 265 >gi|225011020|ref|ZP_03701485.1| peptide chain release factor 2 [Flavobacteria bacterium MS024-3C] gi|225004825|gb|EEG42782.1| peptide chain release factor 2 [Flavobacteria bacterium MS024-3C] Length = 288 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 79/284 (27%), Positives = 142/284 (50%), Gaps = 8/284 (2%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ ++ D +I + +LE + + + D+ S +L+I AG GG+E Sbjct: 1 MMEFADAGEITEDELKIAYQNTLDVLEDLE----FRNMLSEEGDNLSAVLQITAGAGGTE 56 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + + L RMY ++ +K++ L+ + D G K + I G F +K E+GVHR Sbjct: 57 SCDWAAMLMRMYMMWSQKAGFKIKELNYQEGDVAGVKTVTLGIEGDFAFGWLKGENGVHR 116 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++ + HTS A+V V P + + DI R+ G+GGQ+VN ++ Sbjct: 117 LVRISPFDSNAKRHTSFASVYVYPLIDDSIEIVINPADISWAFARSGGAGGQNVNKVETK 176 Query: 244 VRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 V +TH PTGI++ S +SQ NR AMK+L+++LY++E ++ RS ++ + Sbjct: 177 VILTHHPTGIIIHNSETRSQLDNRENAMKLLKSQLYEIELRKRQEARSEIESSKMK-IEW 235 Query: 303 SERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR Y + + D R ++ VL G++D + L Sbjct: 236 GSQIRNYVLHPYKLVKDVRSGTETGDVDAVLDGHLDPFLKGFLM 279 >gi|111114896|ref|YP_709514.1| peptide chain release factor 2 [Borrelia afzelii PKo] gi|216263773|ref|ZP_03435767.1| peptide chain release factor 2 [Borrelia afzelii ACA-1] gi|110890170|gb|ABH01338.1| peptide chain release factor 2 [Borrelia afzelii PKo] gi|215979817|gb|EEC20639.1| peptide chain release factor 2 [Borrelia afzelii ACA-1] Length = 269 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 97/250 (38%), Positives = 145/250 (58%), Gaps = 9/250 (3%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 K+ D L I +G GG+EA +V L+RMY RYA +K+K E++ + + GG K Sbjct: 20 YFKEELDANDAFLTIHSGAGGTEACDWVAMLYRMYSRYAERKKYKTELIDLLEAE-GGIK 78 Query: 162 EIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLE 220 + I G + +K E G+HR+ R+ +A+ + HTS A+V + +I++ I E Sbjct: 79 SVTIEIKGEYAYGLLKSEVGIHRLIRISPFDAAKKRHTSFASVFIDPVIDEKIEIIIKPE 138 Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279 DIRIDT RASG+GGQHVN T SAVRITHI TGI+ + S++SQH+N+ AMKVL++RLY+ Sbjct: 139 DIRIDTYRASGAGGQHVNKTSSAVRITHIETGIVTQSQSDRSQHKNKDMAMKVLKSRLYE 198 Query: 280 VERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYI 336 + + + + + K +I G+ +IR+Y F + DHR + V+ G I Sbjct: 199 YYKNKEDEKNKSKQDTKKEISWGN---QIRSYVFQPYNLVKDHRTKFENSNITSVMDGNI 255 Query: 337 DDIINPLLTA 346 D+ I L Sbjct: 256 DNFIEEYLKW 265 >gi|126643323|ref|YP_001086307.1| peptide chain release factor 2 [Acinetobacter baumannii ATCC 17978] Length = 278 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 98/264 (37%), Positives = 146/264 (55%), Gaps = 11/264 (4%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D + + Q E+ E+E+ +LE + + + D C +EI+AG+GG+EA Sbjct: 4 LAVEADDESLLEDVQSELSTAEEELAKLE----FRRMFSNPMDPNPCYVEIQAGSGGTEA 59 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+ +K E++ SD D G K + G + ++ ESGVHR+ Sbjct: 60 QDWASMLLRMYMRWIERHGFKAELMEVSDGDVAGIKSATIRVEGEYAYGWLRTESGVHRL 119 Query: 186 QRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R ++ R HTS + V + PE I++DI D+R DT RASG+GGQH+N TDSAV Sbjct: 120 VRKSPFDSGNRRHTSFSAVFISPEVDDNIEIDINPSDVRTDTYRASGAGGQHINKTDSAV 179 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 R+THIPTGI+V +++SQH NR A K LRA+LY++E ++ + K IG G Sbjct: 180 RLTHIPTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMQKRNEAAQALEDSKSDIGWG- 238 Query: 302 RSERIRTYNFSQGRITDHRINLTL 325 +IR+Y RI D R + + Sbjct: 239 --SQIRSYVLDDSRIKDLRTGVEI 260 >gi|295111639|emb|CBL28389.1| peptide chain release factor 2 [Synergistetes bacterium SGP1] Length = 224 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 88/225 (39%), Positives = 130/225 (57%), Gaps = 4/225 (1%) Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L RMY RYA K VL ++++++ G K + G + +K E GVHR+ R+ Sbjct: 1 MLLRMYLRYAERDGLKATVLEATNDEEAGIKSATVMMEGDNAYGFLKAERGVHRLVRISP 60 Query: 191 TEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 +++ R HTS A+V V PE ++ DVDI ED+++DT RASG+GGQ+VN TDSA+RITH+ Sbjct: 61 FDSAHRRHTSFASVLVTPEFSDDVDVDIRPEDLKVDTYRASGAGGQYVNRTDSAIRITHL 120 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PTGI+V +E+SQH NR AM VLR++LY+ + +E ++ + + +IR+ Sbjct: 121 PTGIVVTCQNERSQHMNRQVAMHVLRSKLYERALQERQDELASVVGDKKET-TWGSQIRS 179 Query: 309 YNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMI 352 Y + DHR L + VL G IDD I L + + Sbjct: 180 YVLHPYTLVKDHRTGLEKGNAQAVLDGDIDDFIMEYLRFRARREL 224 >gi|261749632|ref|YP_003257318.1| peptide chain release factor 2 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497725|gb|ACX84175.1| peptide chain release factor 2 [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 367 Score = 164 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 86/363 (23%), Positives = 170/363 (46%), Gaps = 29/363 (7%) Query: 3 FLSHKQICDLKNRFAEIELRMS----------------ESPSVDAYIKLTEEYAAISPII 46 + ++ I + + +++ ++ K + + Sbjct: 1 MIKNEDIQSISEKINKLQEVLNIDQIKESIEKEEKKISNQNFWKNCKKAKNFTKRLHAMK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + I + + K ++L + + +++ + + L + I + L + Sbjct: 61 TCIKNFFELKNALEELEILFSLSKEEDLEKEVKI-----QLNKTKNLLSNIEFKNLLSEE 115 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D + +L+I +G GG+E+ + L RMY +A K+ V+ + D G K + Sbjct: 116 EDIFNAVLQISSGAGGTESCDWTSMLMRMYIMWAEKNKFSVKNIHHIPGDITGIKSVTLE 175 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRID 225 + G F +K E+GVHR+ R+ + + + HTS ++V V P +ID++I + DI+ + Sbjct: 176 LDGLYAFGYLKGENGVHRLIRLSPFDNNSKRHTSFSSVYVYPLVDKDIDININMSDIQWN 235 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVTS-SEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SGSGGQ+VN +S VR+ H PTGI++ + +SQ QNR +A+ +L++RL+++E + Sbjct: 236 TFRSSGSGGQNVNKVESGVRLRHHPTGIIIENTETRSQMQNRQKALHLLKSRLFEIEISK 295 Query: 285 MANERSAN--RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 +++ K +I G +IR Y + + D R ++ V+ G ID + Sbjct: 296 KNEKKNKIESSKKKIEWG---SQIRNYIMHPYKLVKDLRTGYETTQIHSVMNGEIDIFLK 352 Query: 342 PLL 344 L Sbjct: 353 KFL 355 >gi|328788515|ref|XP_001119866.2| PREDICTED: peptide chain release factor 1-like, mitochondrial-like [Apis mellifera] Length = 354 Score = 164 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 110/299 (36%), Positives = 175/299 (58%), Gaps = 16/299 (5%) Query: 39 YAAISPIISKISIYDQKK--QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96 ++ +++ D++K ++L + + + +++ + E Sbjct: 35 KKYLNYLMNAYQNEDERKGINGNEELKNLAKEEE------------LTYMQQLLEIDEQI 82 Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 +N ++ D + + I+EI G GG EA LF DL MY +Y + E+L N+ Sbjct: 83 LNIIIKYIDVEHYDNIIMEIVPGVGGQEAMLFAKDLLNMYIKYFNHIGFNYEILEILSNE 142 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 G ++ IS F ++K+E GVHRVQR+PATE SGR+HTS A V +LPE ++D+ Sbjct: 143 LNGLRKATVLISDNNAFKKLKYEGGVHRVQRIPATEKSGRLHTSTAVVTILPEPKDVDIK 202 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 + +D+ I++ +ASG+GGQHVNTTDSA+RITHIPTG +V + +SQ +N+ A+ L++ Sbjct: 203 LEDKDLIIESKKASGAGGQHVNTTDSAIRITHIPTGTIVTCQTNRSQIKNKQIALTKLKS 262 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQ 333 LY+ E + + + RK QIG R+E+IRTYNF+Q R+TDHRI N T+Y L+ ++ Sbjct: 263 LLYEEELNKQVSFINQIRKKQIGKRLRNEKIRTYNFNQDRVTDHRIPNGTMYNLKEFME 321 >gi|189191194|ref|XP_001931936.1| peptide chain release factor 1 [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973542|gb|EDU41041.1| peptide chain release factor 1 [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 321 Score = 163 bits (413), Expect = 3e-38, Method: Composition-based stats. Identities = 109/313 (34%), Positives = 172/313 (54%), Gaps = 22/313 (7%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D +D E+R LA ++ I ++ + L+P C+LEIR G GGSE Sbjct: 1 MIHDSTTDPELRSLASDDLEEIRTQLVHASQSLITSLVPVHPFAHLPCLLEIRPGAGGSE 60 Query: 125 AALFVGDLFRMYERYAALRKWKVE---VLSSSDNDDGGY--KEIVATISGRGVFSRMKFE 179 AA+F GDLFRMY + ++ + + + G E + + + + E Sbjct: 61 AAIFAGDLFRMYMAFCNRNGFRTNLLKYENINGTTEAGVPLSEAIMEVENENAYGVFRCE 120 Query: 180 SGVHRVQRVPATEASGRVHTSAATVAVLP------------EAAEIDVDIPLEDIRIDTM 227 +GVHRVQRVPATE GR HTSAA+V VLP + E D I ++++++ M Sbjct: 121 AGVHRVQRVPATETKGRTHTSAASVHVLPSLQENSAEEQDFDNPESDYYIDPKEVKLEVM 180 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RASG+GGQHVN T+SAVR+TH+PT +V +SQH+N+ +A +LRAR+ R++ Sbjct: 181 RASGAGGQHVNKTESAVRLTHMPTNTVVAMQDSRSQHKNKEKAWALLRARIAQTRREKRE 240 Query: 287 NERSANRKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINP 342 E + R+ IG R +++RTYN+ Q R+TDHR T++ L+ V+ G ++ ++ Sbjct: 241 EEMANMRRSVIGVARMGRGDKVRTYNWGQQRVTDHRSGTTVHDLDDVMGGGQTLEKVMES 300 Query: 343 LLTAHQAKMIGSA 355 + + + + + Sbjct: 301 VRSWLMERDVEAL 313 >gi|303280341|ref|XP_003059463.1| predicted protein [Micromonas pusilla CCMP1545] gi|226459299|gb|EEH56595.1| predicted protein [Micromonas pusilla CCMP1545] Length = 289 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 85/295 (28%), Positives = 136/295 (46%), Gaps = 18/295 (6%) Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 +I D S +++ +LA A+ LE L T D + I AG GG++ Sbjct: 1 MIADDPSSADVPELASEVSDAVNALEGALEA-WEARRLLGGTYDALGATVFIYAGAGGTD 59 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A + L R Y ++A R + V V + + D+ G K + I GR + + E G HR Sbjct: 60 AQDWSEMLERCYLQWADRRGFAVRVEARTPGDEAGLKSVTLEIEGRYAYGYLASEKGTHR 119 Query: 185 VQRVPATEASG------RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 + R TS A V V+P + I + TMR+ G+GGQ+VN Sbjct: 120 LVRTSPFNKGAFSFIHATRQTSFAAVDVMP--------TLEDKIEVTTMRSGGAGGQNVN 171 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 ++AVR+ H+PTGI+V E+SQ NR +A+ L+A+L V +R + +A R + Sbjct: 172 KVETAVRMKHLPTGIVVRCEEERSQAMNRAKAIARLKAKLAAVAEERRLADVAAVR-GDV 230 Query: 298 GSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 + ++IR Y F + D R + +E V+ G +D+ N L ++ Sbjct: 231 VKAEWGQQIRNYVFHPYKMVKDVRTGMETSDVEGVMNGKLDEFQNAWLRWRASEK 285 >gi|302847640|ref|XP_002955354.1| hypothetical protein VOLCADRAFT_106758 [Volvox carteri f. nagariensis] gi|300259426|gb|EFJ43654.1| hypothetical protein VOLCADRAFT_106758 [Volvox carteri f. nagariensis] Length = 242 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 71/226 (31%), Positives = 113/226 (50%), Gaps = 6/226 (2%) Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY R+A + V ++ + ++ G K + ++GR V+ ++ E G HR+ Sbjct: 1 MDWAEMLERMYLRWAEQQGHGVRLVDRAPGEEAGVKSVELEVAGRYVYGYLRAEKGTHRL 60 Query: 186 QRVPATEASGRVHTSAATVAVLP---EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 R A G TS A V V+P D+D+ D+ TMR+ G GGQ+VN ++ Sbjct: 61 VRNSPFNAKGLRQTSFAGVDVMPVLGPGDLPDLDLNERDLEFSTMRSGGKGGQNVNKVET 120 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 VRI H+PTGI V + E+SQ QNR AM +L++RL V ++ A + R + + Sbjct: 121 GVRIVHLPTGISVKCTQERSQSQNREIAMDILKSRLLVVLEEQNARRVAEIRGDLVK-AE 179 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 ++IR Y F + + D R + + VL G + D + L Sbjct: 180 WGQQIRNYVFHPYKLVKDTRTGVETSDVAAVLDGDLADFMAAYLRM 225 >gi|150024963|ref|YP_001295789.1| peptide chain release factor 2 [Flavobacterium psychrophilum JIP02/86] gi|149771504|emb|CAL42973.1| Peptide chain release factor 2 (RF-2) [Flavobacterium psychrophilum JIP02/86] Length = 293 Score = 163 bits (412), Expect = 4e-38, Method: Composition-based stats. Identities = 90/285 (31%), Positives = 149/285 (52%), Gaps = 8/285 (2%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + +L++ E+ + I + D D S +L+I AG GG+E+ Sbjct: 5 LQLAYDFYKEGELSEQELDQQYEATNTHIEGIELKNMLSDEGDALSAVLQITAGAGGTES 64 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY +A + +K++ L+ D G K + I G F +K E+GVHR+ Sbjct: 65 CDWAEMLMRMYIMWAQNQGYKIKELNFQKGDAAGIKTVTLEIEGDYSFGYLKGENGVHRL 124 Query: 186 QRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 R+ +++ + HTS A+V V P I+++I DI I T R+SG+GGQ+VN ++ V Sbjct: 125 VRISPFDSNAKRHTSFASVYVYPLVDDTIEIEINPADIEIITARSSGAGGQNVNKVETKV 184 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301 ++TH PTGI + S +SQH NR RAM++LR++LY++E K+ +R+ K++I G Sbjct: 185 QLTHKPTGIQIQCSETRSQHDNRNRAMQMLRSQLYEIELKKQQEQRNDIEAGKMKIEWG- 243 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR Y + + D R ++ V+ G ID + L Sbjct: 244 --SQIRNYVMQPYKLVKDVRTGHETSDVDSVMNGNIDAFLKAYLM 286 >gi|256370731|ref|YP_003108556.1| peptide chain release factor 2 [Candidatus Sulcia muelleri SMDSEM] gi|256009523|gb|ACU52883.1| peptide chain release factor 2 [Candidatus Sulcia muelleri SMDSEM] Length = 360 Score = 163 bits (411), Expect = 5e-38, Method: Composition-based stats. Identities = 97/354 (27%), Positives = 174/354 (49%), Gaps = 27/354 (7%) Query: 3 FLSHKQICDLKNRFAEI----------------ELRMSESPSVDAYIKLTEEYAAISPII 46 ++ +QI L N+ EI E ++ + + ++S Sbjct: 1 MVTKEQIKKLSNKIKEISISLEIKKKISFLKKEEKKLMSPFFWKNKKQSKKIIKSLSETK 60 Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 ++ ++ K+ DL + S E +E+ + K+I L ++I + Sbjct: 61 KWLNTFNLLKESFNDLKILFFYFKSGEETE----LEINNLLKKIENLISKIELKNFFFEK 116 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 +D + +L+I AG GG+E+ +V L+RMY +A +K++ L+S D G+K I Sbjct: 117 EDASNAVLQISAGAGGTESCDWVSMLYRMYFLWAEKNNFKIKKLNSLQGDIIGFKSITFE 176 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRID 225 + G F +K E+GVHR+ R+ + S + HTS A+V + P + ++DI DI D Sbjct: 177 VKGFYPFGYLKGENGVHRLVRISPFDNS-KRHTSFASVYIYPLIKKDLNLDIKASDITWD 235 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ G+GGQ+VN ++ VR+ H PT I++ S +SQ QN+ +A+K+L++RLY +E+++ Sbjct: 236 TFRSGGAGGQNVNKVETGVRLHHRPTNIIIENSETRSQIQNKNKALKLLKSRLYYIEKQK 295 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYID 337 + + K +I G +IR Y + + D + + VL G I+ Sbjct: 296 LFKSKMKFNKKKIEWG---SQIRNYIMHPYKLVKDIKTGYETSDIHSVLNGEIN 346 >gi|17542784|ref|NP_500737.1| hypothetical protein W03F8.3 [Caenorhabditis elegans] gi|6093954|sp|O44568|RF1M_CAEEL RecName: Full=Probable peptide chain release factor 1, mitochondrial; Short=MRF-1; Short=MtRF-1; Flags: Precursor gi|2736385|gb|AAB94190.1| Hypothetical protein W03F8.3 [Caenorhabditis elegans] Length = 389 Score = 163 bits (411), Expect = 6e-38, Method: Composition-based stats. Identities = 112/332 (33%), Positives = 177/332 (53%), Gaps = 14/332 (4%) Query: 24 SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEV 83 + + + ++++ A +S S++S + ++ + D E + Sbjct: 59 AAPEQISYWESISKQSAKVSDGRSELSQLRTIINDPKETEEMRKLAEVDVESIE------ 112 Query: 84 LAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR 143 E EL+ ++ + D C +E+ G GG EA LF G+L MY++ AA+ Sbjct: 113 ---ENLETELQELAVKIVPLNNLDVLSKCQIELSCGAGGQEAMLFTGELLDMYQKLAAVN 169 Query: 144 KWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAAT 203 WK + L + GG + + +SG V+++M+FE+GVHRVQRVP ++ R+HTS A+ Sbjct: 170 SWKWDPLQVDNVPLGGVRSALIAVSGEKVYAKMRFEAGVHRVQRVPVNDS--RMHTSTAS 227 Query: 204 VAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQ 262 ++VLPE E+ V +P + ++I+ MRASG GGQ+VN +AVR+TH TGI V E+ Q Sbjct: 228 ISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRMTHKETGIAVHCMDERFQ 287 Query: 263 HQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN 322 H N A K L A L + M + + RKLQ+GS R+E+IRTYNF R+TDHRI Sbjct: 288 HLNIQIAYKRLAAILMQKQVDAMLEKIVSKRKLQVGSKARAEKIRTYNFQHDRVTDHRIQ 347 Query: 323 LTLYKLEYVL-QGY-IDDIINPLLTAHQAKMI 352 +++ + L G + +I L H + Sbjct: 348 MSITGVAEFLSAGETLQTMIERLQEQHLEDRL 379 >gi|330840796|ref|XP_003292395.1| hypothetical protein DICPUDRAFT_40482 [Dictyostelium purpureum] gi|325077351|gb|EGC31069.1| hypothetical protein DICPUDRAFT_40482 [Dictyostelium purpureum] Length = 330 Score = 162 bits (410), Expect = 7e-38, Method: Composition-based stats. Identities = 91/335 (27%), Positives = 171/335 (51%), Gaps = 14/335 (4%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +S + ++D IK +EY ++ +I + + + ++ Q++ + D E+ + + Sbjct: 4 EELLSSNNNID--IKDIKEYNSLKAVIDEFNSLNNSFKDYQEIVEMSK-KEGDQEMLNES 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + + ++ +LE + +DD SC +E+ AG GG+++ + + +MY + Sbjct: 61 RNLLNSLYSICTDLEINVLM----IGEEDDNSCFIEVHAGVGGADSMDWTEIIHKMYINW 116 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + ++V ++ S + G + I G+ + ++ E G+H++ R+ + HT Sbjct: 117 AERKGFQVSIIE-SIPGEFGLRRATLKIDGKNAYGWLRTEMGIHKLIRISPFSPDFKRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTS 257 S A+V V P + +VD+ D++I+ R+SG+GGQHVNTT+SAVRI HIPT I + S Sbjct: 176 SFASVVVYPSSDNSINVDLKPNDLKIEFTRSSGAGGQHVNTTESAVRIVHIPTNISVFCS 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI-RTYNFSQG-R 315 SE+SQHQN+ + +L+ +++ + R +G S I R+Y R Sbjct: 236 SERSQHQNKAIGLDLLKTKIFRHYLSIKNEKEKKFRDELGTNGFASGNIVRSYTMHPQER 295 Query: 316 ITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQ 348 + D R +L +L+G +D +I L+ Q Sbjct: 296 VKDQRTGFETSQLSKILEGDEELDKMIKLALSVSQ 330 >gi|268552039|ref|XP_002634002.1| Hypothetical protein CBG20109 [Caenorhabditis briggsae] gi|187023852|emb|CAP37210.1| hypothetical protein CBG_20109 [Caenorhabditis briggsae AF16] Length = 389 Score = 162 bits (409), Expect = 9e-38, Method: Composition-based stats. Identities = 111/349 (31%), Positives = 181/349 (51%), Gaps = 16/349 (4%) Query: 9 ICDLKNRFAEIEL--RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + R A+ + + + + + ++ + +S +++ + ++ + + Sbjct: 42 LKTVTERLAQCQAGNATAAPEQISYWEAIAKQSSVVSDTRFELAQLNSIIKDPNETEEMR 101 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 +D E E L+ ++ + D C +E+ +G GG EA Sbjct: 102 KLAEADVESLK---------ETLETGLKELAARVVPLTNLDVLSKCQIELSSGAGGQEAM 152 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 LF G+L MY++ AA WK + L GG + + +SG V+S+M+FE+GVHRVQ Sbjct: 153 LFTGELLDMYQKLAATNSWKWDPLQVDSVPLGGVRSALIAVSGENVYSKMRFEAGVHRVQ 212 Query: 187 RVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 RVP ++ R+HTS A+++VLPE E+ V +P + ++I+ MRASG GGQ+VN +AVR+ Sbjct: 213 RVPVNDS--RMHTSTASISVLPEPEEVSVVVPSDSVKIEAMRASGPGGQNVNKRSTAVRM 270 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH TGI V E+ QH N A K L A L + M + + RKLQ+GS R+E+ Sbjct: 271 THKETGIAVHCMDERFQHLNIQIAYKRLAAILMQRQVDAMLEKIVSRRKLQVGSKARAEK 330 Query: 306 IRTYNFSQGRITDHRINLTLYKLEYVL-QGY-IDDIINPLLTAHQAKMI 352 IRTYNF ++TDHRI + + +E L G + +I+ L H + Sbjct: 331 IRTYNFQHDKVTDHRIGMAITGVEEFLSAGESLVSMIDRLQEQHMEDRL 379 >gi|256045467|ref|ZP_05448354.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. Rev.1] Length = 141 Score = 161 bits (408), Expect = 1e-37, Method: Composition-based stats. Identities = 96/139 (69%), Positives = 119/139 (85%) Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLY 278 EDIRIDTMRASG+GGQHVNTTDSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLY Sbjct: 1 NEDIRIDTMRASGAGGQHVNTTDSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLY 60 Query: 279 DVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDD 338 D+ER++ +ERS R+ Q+GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D+ Sbjct: 61 DMERQKAESERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDE 120 Query: 339 IINPLLTAHQAKMIGSASE 357 +++ L++ HQ ++ E Sbjct: 121 LVDALISDHQTALLAELGE 139 >gi|153005568|ref|YP_001379893.1| peptide chain release factor 2 [Anaeromyxobacter sp. Fw109-5] gi|152029141|gb|ABS26909.1| peptide chain release factor 2 [Anaeromyxobacter sp. Fw109-5] Length = 309 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 94/286 (32%), Positives = 144/286 (50%), Gaps = 13/286 (4%) Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + + + + + L + + ++ ++ AQ + + + + + Sbjct: 3 AAYARVRRSLDDAEALAELADEARDEATRQEAAQQCEVVAKDLEA-----LEFQKMLSGE 57 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D I+E+++G GG EA + L+RMY RY R W VE ++ G + Sbjct: 58 HDRAGAIVEVKSGAGGVEAMDWAAMLYRMYTRYCERRGWSVEPADLVAGEEAGISQASFI 117 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRID 225 G + +K E GVHR+ R+ + + R TS A V V PE + VDI D+RID Sbjct: 118 ARGEFAYGFLKAERGVHRLVRISPFDQAARRQTSFAAVDVTPEIEDDIVVDIKEADVRID 177 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+SG+GGQ VN TDSAVR+TH+PTGI+V +E+SQ +NR A K+LRA+LY++E K+ Sbjct: 178 TYRSSGAGGQKVNKTDSAVRLTHLPTGIVVAVQNERSQQKNRGVAWKILRAKLYELEEKK 237 Query: 285 MANERSANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYK 327 A R A K I D +IR+Y R + D R + K Sbjct: 238 RAEARDAVEATKKDI---DFGSQIRSYVLQPYRMVKDLRTGVETGK 280 >gi|326520682|dbj|BAJ92704.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 236 Score = 161 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 101/225 (44%), Positives = 147/225 (65%), Gaps = 2/225 (0%) Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 RMY+RY L WK + +S S+ + GG+K V + G+ V+S++KFESGVHRVQRVP TE Sbjct: 6 VRMYQRYCELNNWKFKPVSCSEAEKGGFKTYVMEVKGKQVYSKLKFESGVHRVQRVPQTE 65 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 GRVHTS ATVA++PEA E+DV I +DI + R+ G+GGQ+VN ++A+ + H PTG Sbjct: 66 TMGRVHTSTATVAIMPEADEVDVVIDPKDIELKAARSGGAGGQNVNKVETAIDLIHKPTG 125 Query: 253 I-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I + + EKSQ QN+ RA ++LRA+LY+++ + R LQ+G+G RSE+IRTYN+ Sbjct: 126 IRIFCTEEKSQLQNKERAFQLLRAKLYEIKLREQQESIRTQRLLQVGTGARSEKIRTYNY 185 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 R+TDHR+ + + L L G I+ I Q +++ + Sbjct: 186 KDNRVTDHRLKMN-FILSSFLLGDIESAIQSCAALEQKELLEEMA 229 >gi|330951103|gb|EGH51363.1| peptide chain release factor 1 [Pseudomonas syringae Cit 7] Length = 243 Score = 160 bits (405), Expect = 3e-37, Method: Composition-based stats. Identities = 106/245 (43%), Positives = 161/245 (65%), Gaps = 6/245 (2%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVALYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV ++++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETKQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY RYA R W+VE+LS ++ + GGYKE++A + G V+ ++K Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRGWRVEILSENEGEHGGYKEVIARVEGDSVYGKLK 178 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVP TE+ GR+HTSA TVAVLPE E ++I D+R+DT R+SG+GGQH Sbjct: 179 FESGAHRVQRVPETESQGRIHTSACTVAVLPEPDEQQAIEINPADLRVDTYRSSGAGGQH 238 Query: 237 VNTTD 241 VN TD Sbjct: 239 VNKTD 243 >gi|213403996|ref|XP_002172770.1| peptide chain release factor 1 [Schizosaccharomyces japonicus yFS275] gi|212000817|gb|EEB06477.1| peptide chain release factor 1 [Schizosaccharomyces japonicus yFS275] Length = 312 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 116/271 (42%), Positives = 164/271 (60%), Gaps = 5/271 (1%) Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 SD E+ LA+ E I K+ ++ ++ LL K + +LE+RAG GGSEAALF Sbjct: 3 DESDKELLQLAESENNEIMKKTHDVLEGMHKLLSLKPNNYQAPALLEVRAGVGGSEAALF 62 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 +L MYERY A R WK + LS S ++G V+ + E+GVHRVQR Sbjct: 63 ASELLSMYERYCAFRNWKWKPLSLSKTENGNGITEAIVSVSGHVYGELFHEAGVHRVQRT 122 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPL----EDIRIDTMRASGSGGQHVNTTDSAV 244 PATE GR+HTS +V VLP ++ DIR+D MRA G+GGQHVN T+SAV Sbjct: 123 PATETKGRLHTSTVSVIVLPTVNSQTLETESKLDANDIRVDVMRAKGAGGQHVNRTESAV 182 Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 R+THIP+GI V +SQH+N+ RA+ +LR+R+ + + + ++ R+ Q+ S RS Sbjct: 183 RLTHIPSGITVCMQDSRSQHENKERALLILRSRVAALRHENLQKQQHDARRKQVSSPVRS 242 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 E+IRTYN++Q RITDHR + ++Y E ++G Sbjct: 243 EKIRTYNYAQNRITDHRCSCSMYDTEGFMEG 273 >gi|32491189|ref|NP_871443.1| hypothetical protein WGLp440 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25166396|dbj|BAC24586.1| prfB [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 278 Score = 160 bits (404), Expect = 3e-37, Method: Composition-based stats. Identities = 79/278 (28%), Positives = 150/278 (53%), Gaps = 7/278 (2%) Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + +DS+ E++ + K ++++E + + +D +C ++I+ G+GG +A Sbjct: 1 MSLEENDSKSLLEVNNEIILLNKRMKKIEL----MCYFFEKNDRCNCYMDIQPGSGGIDA 56 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + L RMY ++A +K +++ S ++ G K G + +K E+G+HR+ Sbjct: 57 QDWASILLRMYLKWADRNNFKTDIIYKSSSEIAGIKSATVKFLGSYAYGWLKKETGIHRL 116 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL-EDIRIDTMRASGSGGQHVNTTDSAV 244 R +++G+ HTS ++ V P+ + D+RID R+SG+GGQHVN T+SAV Sbjct: 117 VRKSPFDSNGKRHTSFCSIFVYPDINDKIEIKINLSDLRIDVYRSSGAGGQHVNRTESAV 176 Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PT I S++SQH+N+ +A+ L+++LY+ E ++ ++ K + Sbjct: 177 RITHLPTKITTQCQSDRSQHKNKEKAINQLKSKLYEFELRKKNKDKKIIEKSKSKIA-WG 235 Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 +IR+Y F + D R + K++ +L G ++ +N Sbjct: 236 NQIRSYIFDNSIVKDLRTGIESKKIQSILDGDLNIFLN 273 >gi|328853865|gb|EGG03001.1| hypothetical protein MELLADRAFT_109720 [Melampsora larici-populina 98AG31] Length = 413 Score = 160 bits (404), Expect = 4e-37, Method: Composition-based stats. Identities = 123/362 (33%), Positives = 191/362 (52%), Gaps = 20/362 (5%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 RF + + S L ++ + I S + +++ +L +I + + D Sbjct: 50 KRFIKTNETIPSQGSWSNGEFL-KKSKRVDSIKSTLEEWERVMNLVSELQ-LISNTDPDP 107 Query: 74 EIRDL--------AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 ++R + + +++ + L P +S ++EI+ G GG EA Sbjct: 108 DMRQIALTELESLYSSSDQESSNNLSNIKSRLLESLFPTPISHRQSALVEIKPGVGGVEA 167 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG----GYKEIVATISGRGVFSRMKFESG 181 A F L +Y R+A +KWKV+ ++ G G +E I G V+ RM++E+G Sbjct: 168 AHFATSLMNLYNRHALRQKWKVKPVNVEFMVSGHSMDGLREATLEIEGEDVYKRMRWEAG 227 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD---IPLEDIRIDTMRASGSGGQHVN 238 VHRVQRVP + + VHTS A V L + + +D+R++TMR+ G+GGQHVN Sbjct: 228 VHRVQRVPVMQNTSSVHTSTAAVLPLDPGNQDSQEEALFEEKDVRMETMRSQGAGGQHVN 287 Query: 239 TTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 T+SAVR+TH+PTGI+V+ +SQHQNR RA +LRARL D+ ++ E R Q+ Sbjct: 288 KTESAVRLTHVPTGIVVSMQDSRSQHQNRARAFMILRARLSDLRNQQKQVEERGLRLSQV 347 Query: 298 GSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSA 355 + DR+++IRTYNF QGR+TDHRI LTL +L V++G ++ I L + I S Sbjct: 348 KTSDRNQKIRTYNFQQGRVTDHRIGLTLPRLHDVMEGGETLESIWMRLAEDELKQSIKSL 407 Query: 356 SE 357 E Sbjct: 408 LE 409 >gi|71900150|ref|ZP_00682291.1| Class I peptide chain release factor [Xylella fastidiosa Ann-1] gi|71730099|gb|EAO32189.1| Class I peptide chain release factor [Xylella fastidiosa Ann-1] Length = 175 Score = 159 bits (403), Expect = 4e-37, Method: Composition-based stats. Identities = 97/172 (56%), Positives = 131/172 (76%), Gaps = 3/172 (1%) Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQHVNTTDSAVRI 246 +PATE+ GR+HTSAATVA++PEA EI D++IDT R+SG+GGQHVN T+SA+RI Sbjct: 1 MPATESQGRIHTSAATVAIIPEADEIADISINPADLKIDTFRSSGAGGQHVNKTESAIRI 60 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 TH+PTG++V + +E+SQH NR +AMK L+A+L + ER + A + RKLQ+GSGDRS+R Sbjct: 61 THLPTGVVVESQTERSQHANRDKAMKRLKAQLIESERSQQATAEAMTRKLQVGSGDRSQR 120 Query: 306 IRTYNFSQGRITDHRI-NLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 IRTYNF QGRITDHR+ NLTLY L +++G +D +I+ L HQA+ + S Sbjct: 121 IRTYNFPQGRITDHRVENLTLYDLPNIIEGDLDPLIDRLRQEHQAEELARLS 172 >gi|307198741|gb|EFN79544.1| Peptide chain release factor 1-like, mitochondrial [Harpegnathos saltator] Length = 362 Score = 159 bits (402), Expect = 6e-37, Method: Composition-based stats. Identities = 116/318 (36%), Positives = 174/318 (54%), Gaps = 20/318 (6%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 ++ I +++ ++ + + + + + L + Sbjct: 51 QLVENIQNLQDLVKQDTEIKKLAEEEELVYKEQLDELDKNLLDIILADMCKEC------- 103 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + I+EI AG GG EA LFV +L+ MY YA EVL D GY+ + Sbjct: 104 -----CDNIIIEITAGVGGQEAMLFVKNLYEMYIGYAEYLGLCHEVLDMDTTDCNGYRNV 158 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 +SG+ ++E GVHRVQRVP TE GRVHTS A+VA+LP +E+++ I D++ Sbjct: 159 TIIVSGKQTSK-FRYEGGVHRVQRVPTTEKLGRVHTSTASVAILPIPSEVEIVINERDLK 217 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 I+T RASGSGGQHVN T+SAVRITHIPTG++V +SQ +N+ AM LR +Y+ + Sbjct: 218 IETKRASGSGGQHVNKTNSAVRITHIPTGLIVECQVHRSQIRNKKLAMMRLRNMMYEQQL 277 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQG--YIDDI 339 + + RS RK QIG G R+E++RTYN++Q R+TDHR+ N T Y L +QG ++ + Sbjct: 278 NKQTSFRSELRKKQIGMGFRNEKVRTYNYNQDRVTDHRLQNGTFYNLSEFMQGGAGLEQL 337 Query: 340 INPLLTAHQAKMIGSASE 357 + L H+ + + E Sbjct: 338 EDKL---HKDTRMKALLE 352 >gi|323964710|gb|EGB60181.1| peptide chain release [Escherichia coli M863] Length = 160 Score = 159 bits (401), Expect = 8e-37, Method: Composition-based stats. Identities = 84/158 (53%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 202 ATVAVLPEAAEID-VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 TVAV+PE + + DI D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E Sbjct: 1 MTVAVMPELPDAELPDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDE 60 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +SQH+N+ +A+ VL AR++ E + ++ R+ +GSGDRS+R RTYNF QGR+TDH Sbjct: 61 RSQHKNKAKALSVLGARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDH 120 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RINLTLY+L+ V++G +D +I P++ HQA + + SE Sbjct: 121 RINLTLYRLDEVMEGKLDMLIEPIIQEHQADQLAALSE 158 >gi|126664153|ref|ZP_01735146.1| peptide chain release factor RF-2 [Flavobacteria bacterium BAL38] gi|126623867|gb|EAZ94562.1| peptide chain release factor RF-2 [Flavobacteria bacterium BAL38] Length = 285 Score = 158 bits (400), Expect = 9e-37, Method: Composition-based stats. Identities = 86/275 (31%), Positives = 146/275 (53%), Gaps = 8/275 (2%) Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY 136 D+ + EV + ++ + + D D S +L+I AG GG+E+ + L RMY Sbjct: 8 DVTEEEVETQYQHTLSHIEDLEFRNMLSDEGDSMSAVLQITAGAGGTESCDWASMLMRMY 67 Query: 137 ERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGR 196 + + +K++ L+ + + G K + G F +K E+GVHR+ R+ +++ + Sbjct: 68 LMWGEKQGYKIKELNFQEGEVAGIKTVTLEFEGDFAFGYLKGENGVHRLVRISPFDSNAK 127 Query: 197 VHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 HTS A+V V P I++DI DI I T R+SG+GGQ+VN ++ V++ H PTGI + Sbjct: 128 RHTSFASVYVYPLVDDTIEIDINPADIEIITSRSSGAGGQNVNKVETKVQLFHKPTGIQI 187 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFS 312 S +SQ NR RAM++L+++LY++E K+ +RS K++I G +IR Y Sbjct: 188 QCSETRSQQDNRQRAMQMLKSQLYEIELKKQQAQRSDIEAGKMKIEWG---SQIRNYVMH 244 Query: 313 QGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + + D R +E ++ G ID+ + L Sbjct: 245 PYKLVKDVRSGHESSDVEGIMNGEIDNFLKAYLMM 279 >gi|281205221|gb|EFA79414.1| class I peptide chain release factor [Polysphondylium pallidum PN500] Length = 434 Score = 158 bits (400), Expect = 1e-36, Method: Composition-based stats. Identities = 103/349 (29%), Positives = 172/349 (49%), Gaps = 18/349 (5%) Query: 10 CDLKNRFAEIELRMSESPSVD----AYIKLT--EEYAAISPIISKISIYDQKKQEEQDLH 63 D K R IE + + K +E + I +I +++ Sbjct: 91 QDKKQRLVLIENELKSNGVESQLSIDNKKAQTLKECQRLKRDIEQIEELQSNFMYYEEIS 150 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 N S + ++++ ++ + + + +D + C LEI AG GG+ Sbjct: 151 GEAKKKNDQSMLSEMSECISDLYQQSTD-----LEFKSIMSGENDHEDCYLEIHAGAGGA 205 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 ++ + L MY +++ + +KV ++ S + GYK + I G + + ESGVH Sbjct: 206 DSMDWSEILSNMYRKWSQRKDFKVTLVDISPGEV-GYKRAILKIEGEFAYGWCRSESGVH 264 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 ++ R+ ++SG+ HTS A+V P + +D+ +D+ I+TMR+SG GGQH N T+S Sbjct: 265 KLIRLSPFDSSGKRHTSFASVLAYPAVDDSISIDLQTKDLLIETMRSSGPGGQHSNKTES 324 Query: 243 AVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 AVRITH PTGI V S ++SQHQN+ AM +L+A++ E K+ A + + R +G Sbjct: 325 AVRITHTPTGISVAVSDQRSQHQNKSIAMDLLKAKIMASEIKKRAQQEESFRSDLGVNGW 384 Query: 302 RSERI-RTYNFS-QGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTA 346 S+RI RTY Q R+ D R NL ++ +L+G +D I L+ Sbjct: 385 ASDRIVRTYTMHPQTRVKDQRTNLESLNIDEILEGGDELDIFIKTALSQ 433 >gi|301347896|ref|ZP_07228637.1| peptide chain release factor 1 [Acinetobacter baumannii AB056] gi|301513180|ref|ZP_07238417.1| peptide chain release factor 1 [Acinetobacter baumannii AB058] gi|301597157|ref|ZP_07242165.1| peptide chain release factor 1 [Acinetobacter baumannii AB059] Length = 239 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 104/243 (42%), Positives = 160/243 (65%), Gaps = 8/243 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +R E+ ++++ + + KL+ E++ ++ I Y Q ++ Sbjct: 1 MKASLRLRLDQLCDRHEELTALLADAEVISDNKRFRKLSREHSDLTEITEVWGKYRQAEE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + SD + +D+A+ E+ A + + ELE+++N L++PKD +D + LEIR Sbjct: 61 DIETAEMM----KSDPDFKDMAEEEIQANKVLLEELESQLNILMIPKDPNDSNAAYLEIR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F GDLFRMY +YA + W++EVLS ++ + GG+KE++ + G GV+ R+K Sbjct: 117 AGTGGDEAAIFSGDLFRMYSKYAESQGWRIEVLSENEGEHGGFKEVICRVDGDGVYGRLK 176 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-EIDVDIPLEDIRIDTMRASGSGGQH 236 FESG HRVQRVPATE+ GRVHTSA TVA+LPE + +V+I D+RIDT RASG+GGQH Sbjct: 177 FESGAHRVQRVPATESQGRVHTSACTVAILPEIDVDTNVEINPADLRIDTYRASGAGGQH 236 Query: 237 VNT 239 +N Sbjct: 237 INK 239 >gi|220918000|ref|YP_002493304.1| peptide chain release factor 2 [Anaeromyxobacter dehalogenans 2CP-1] gi|219955854|gb|ACL66238.1| peptide chain release factor 2 [Anaeromyxobacter dehalogenans 2CP-1] Length = 309 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 104/299 (34%), Positives = 153/299 (51%), Gaps = 14/299 (4%) Query: 54 QKKQEEQDLHTV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKS 111 ++ D + + + D R A A+ +++ LE + D Sbjct: 7 AVRRALDDAQALCELAEEARDEATRAEAAEAAEAVGRQLEGLELQKM----LSGPHDAAG 62 Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 I+E+++G GG EA + L+RMY RY R W+VE ++ G + G Sbjct: 63 AIVEVKSGAGGVEAMDWAAMLYRMYVRYCERRGWEVEPADLVAGEEAGISSASFIVRGDH 122 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEID-VDIPLEDIRIDTMRAS 230 + +K E GVHR+ R+ + + R TS A V V PE + +DI D+RIDT R+S Sbjct: 123 PYGWLKAEKGVHRLVRISPFDQNARRQTSFAAVDVTPEIEDDIVIDIKEADVRIDTYRSS 182 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQ VN TDSAVR+TH+PTGI+V +E+SQ +NR A K+LRA+LYD+E K+ A R Sbjct: 183 GAGGQKVNKTDSAVRMTHLPTGIVVAVQNERSQQKNRSVAWKILRAKLYDLEEKKRAAAR 242 Query: 290 SANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 A K I D +IR+Y + + D R + K++ VL G +D I P L Sbjct: 243 DAAEALKKDI---DFGSQIRSYVLQPYQMVKDLRTGVETGKVDDVLDGDLDPFIQPYLM 298 >gi|217963389|ref|YP_002349067.1| peptide chain release factor 2, programmed [Listeria monocytogenes HCC23] gi|217332659|gb|ACK38453.1| peptide chain release factor 2, programmed [Listeria monocytogenes HCC23] Length = 304 Score = 156 bits (394), Expect = 5e-36, Method: Composition-based stats. Identities = 92/290 (31%), Positives = 157/290 (54%), Gaps = 10/290 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+T Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMT 235 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 HIP+GI+V SE+SQ +NR +AMK+L+ +LY E++ E + R Q Sbjct: 236 HIPSGIVVTCQSERSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQ 285 >gi|86159138|ref|YP_465923.1| peptide chain release factor 2 [Anaeromyxobacter dehalogenans 2CP-C] gi|85775649|gb|ABC82486.1| bacterial peptide chain release factor 2 (bRF-2) [Anaeromyxobacter dehalogenans 2CP-C] Length = 309 Score = 156 bits (393), Expect = 6e-36, Method: Composition-based stats. Identities = 105/298 (35%), Positives = 153/298 (51%), Gaps = 13/298 (4%) Query: 53 DQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 + + Q L+ + + D R A A+ +++ LE + D Sbjct: 9 RRSLDDAQALNELAEEAR-DEATRAEAAEAAEAVGRQLEGLELQKM----LSGPHDAAGA 63 Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 I+E+++G GG EA + L+RMY RY R W+VE ++ G + G Sbjct: 64 IVEVKSGAGGVEAMDWAAMLYRMYVRYCERRGWEVEPADLVAGEEAGISSASFIVRGDHP 123 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASG 231 + +K E GVHR+ R+ + + R TS A V V PE + V E D+RIDT R+SG Sbjct: 124 YGWLKAERGVHRLVRISPFDQNARRQTSFAAVDVTPEIDDDIVIDIKEADVRIDTYRSSG 183 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQ VN TDSAVR+TH+PTGI+V +E+SQ +NR A K+LRA+LYD+E K+ A R Sbjct: 184 AGGQKVNKTDSAVRMTHLPTGIVVAVQNERSQQKNRNVAWKILRAKLYDLEEKKRAAARD 243 Query: 291 ANR--KLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 A K I D +IR+Y + + D R + K++ VL G +D I P L Sbjct: 244 AAEALKKDI---DFGSQIRSYVLQPYQMVKDLRTGVETGKVDDVLDGDLDPFIQPYLM 298 >gi|145347488|ref|XP_001418196.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144578425|gb|ABO96489.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 278 Score = 156 bits (393), Expect = 7e-36, Method: Composition-based stats. Identities = 76/258 (29%), Positives = 114/258 (44%), Gaps = 6/258 (2%) Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 L D +L+I AG GG +A + L RMY + R + V + + Sbjct: 19 WELRRLLGGKYDAFGAVLQIYAGAGGLDAQDWTEMLERMYLGWCEKRGFAVRATERLEGE 78 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV---LPEAAEI 213 GG K + GR + + E G HR+ R TS A V V E E Sbjct: 79 GGGLKTATLEVEGRYAYGYLSSEKGTHRLVRQSPFNKDAARQTSFAAVDVIPLFEEDMEE 138 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 V +P D+ + TMR+ G+GGQ+VN ++AVRI HIPTGI V ++Q NR AM Sbjct: 139 VVKVPDTDLEVTTMRSGGAGGQNVNKVETAVRIKHIPTGITVKAEEHRTQQLNRQAAMLR 198 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 ++A+L + + + + R I + ++IR Y + + D R + V Sbjct: 199 IKAKLTALAEEARVADIAELR-GDIVKAEWGQQIRNYVLHPYKLVKDVRTGVETSDANKV 257 Query: 332 LQGYIDDIINPLLTAHQA 349 L G +D+ +N L A Sbjct: 258 LNGALDEYMNGYLRWKAA 275 >gi|68171151|ref|ZP_00544559.1| Peptide chain release factor 2 [Ehrlichia chaffeensis str. Sapulpa] gi|67999421|gb|EAM86062.1| Peptide chain release factor 2 [Ehrlichia chaffeensis str. Sapulpa] Length = 221 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 9/221 (4%) Query: 131 DLFRMYERYAA-LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 LFRMY R+A +K E++ D ++ G K + G + K ESG+HR+ R+ Sbjct: 1 MLFRMYVRWAEIYHNFKTEIVHKLDGEEVGVKSATIKVIGDNAYGWAKTESGIHRLVRIS 60 Query: 190 ATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 ++ + HT+ +++ V P + +++I +D+RIDT RASG+GGQHVN T+SAVRITH Sbjct: 61 PFNSNAKRHTTFSSILVSPVINEDTNIEILDKDLRIDTYRASGAGGQHVNKTESAVRITH 120 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN--RKLQIGSGDRSER 305 IP+GI+V + +SQHQN A +L++RLY ++ + + + ++ IG G+ + Sbjct: 121 IPSGIVVQCQNNRSQHQNLAEAHNLLKSRLYQLKLQEKEKKMAEEHNKRCNIGWGN---Q 177 Query: 306 IRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 IR+Y + + D R + + VL G +D I LT Sbjct: 178 IRSYVMHPYQMVKDIRTGHEIGNVNSVLDGNLDSFIISALT 218 >gi|265991893|ref|ZP_06104450.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. Rev.1] gi|263002901|gb|EEZ15252.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. Rev.1] Length = 133 Score = 155 bits (392), Expect = 8e-36, Method: Composition-based stats. Identities = 89/131 (67%), Positives = 112/131 (85%) Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 MRASG+GGQHVNTTDSAVRITHIPTGIMV +EKSQHQNR RAM++LRARLYD+ER++ Sbjct: 1 MRASGAGGQHVNTTDSAVRITHIPTGIMVVQAEKSQHQNRARAMQILRARLYDMERQKAE 60 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +ERS R+ Q+GSGDRSERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++++ L++ Sbjct: 61 SERSQARRSQVGSGDRSERIRTYNFPQGRVTDHRINLTLYKLDRVMEGELDELVDALISD 120 Query: 347 HQAKMIGSASE 357 HQ ++ E Sbjct: 121 HQTALLAELGE 131 >gi|315254829|gb|EFU34797.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli MS 85-1] Length = 155 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 78/144 (54%), Positives = 108/144 (75%), Gaps = 1/144 (0%) Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 DI D+RIDT R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL Sbjct: 10 PDINPADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVL 69 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 AR++ E + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ V++ Sbjct: 70 GARIHAAEMAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDEVME 129 Query: 334 GYIDDIINPLLTAHQAKMIGSASE 357 G +D +I P++ HQA + + SE Sbjct: 130 GKLDMLIEPIIQEHQADQLAALSE 153 >gi|60279679|ref|NP_001012512.1| peptide chain release factor 1, mitochondrial [Danio rerio] gi|58701973|gb|AAH90173.1| Zgc:113104 [Danio rerio] Length = 235 Score = 154 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 93/233 (39%), Positives = 142/233 (60%), Gaps = 7/233 (3%) Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 +F MY+ +A+ + W E+ + + + GG +SG VF +KFE G HRVQR+P Sbjct: 1 MFDMYQGFASYKNWDFELFNYTPAEYGGLHHASVRVSGECVFRWLKFEGGTHRVQRIPEV 60 Query: 192 EASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 S R+ HT TV VLP+ E+D+DI +D+RIDT R+ G+GGQHVNTTDSAVR+ H Sbjct: 61 GLSSRMQRIHTGTMTVIVLPQMEEVDIDIAPKDLRIDTFRSRGAGGQHVNTTDSAVRLVH 120 Query: 249 IPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 +PTG + +SQ +NR A++VLRARL+ + + R+LQ+G+ +SERIR Sbjct: 121 LPTGTVSECQQFRSQLKNRETALRVLRARLHQCMMGQQREQTHTARRLQVGTRAQSERIR 180 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLT-AHQAKMIGSASE 357 TYNF+Q R+TDHRI ++ ++G ++D++ L + +++ + Sbjct: 181 TYNFTQDRVTDHRIGFVTRDIKEFMRGAEGLEDLLRLLQENQDREELLKLLKD 233 >gi|293977889|ref|YP_003543319.1| bacterial peptide chain release factor 2 [Candidatus Sulcia muelleri DMIN] gi|292667820|gb|ADE35455.1| bacterial peptide chain release factor 2 (bRF-2) [Candidatus Sulcia muelleri DMIN] Length = 345 Score = 153 bits (387), Expect = 3e-35, Method: Composition-based stats. Identities = 95/350 (27%), Positives = 175/350 (50%), Gaps = 21/350 (6%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYI-KLTEE-YAAISPIISKISIYDQKKQ--- 57 ++ +I + + EI + Y +L +E + I +++ +KKQ Sbjct: 1 MVTKSKIDKISIKLKEIYYYL---NIEQKYRSRLEKESHNFCKKIKKSNTLFFKKKQILN 57 Query: 58 ---EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 + L + ++ ++E+ I +I + ++I + +D+ + +L Sbjct: 58 YFYSIKVLLNELKILLEFFPYGEVTELEIDFIYNKIEKFFSKIEFTKFFFGKEDNLNAVL 117 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 +I AG GG+E+ + L+RMY +A +K++ ++S D G + I + G F Sbjct: 118 QISAGAGGTESCDWASMLYRMYIMWAEKHNFKIKKINSLQGDIIGLRSITFIVKGLSPFG 177 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSG 233 +K E+GVHR+ R+ + S + HTS A+V + P +I++ I DI +T R+ GSG Sbjct: 178 YLKGENGVHRLVRISPFDNS-KRHTSFASVYIYPLIDDDINIKINTSDISWNTFRSRGSG 236 Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ+VN +S VR+ H PT I++ S KSQ N+++A+K+L++RL+ +E+K ++ + Sbjct: 237 GQNVNKVESGVRLHHHPTNIIIENSETKSQFNNKIKALKLLKSRLFYIEKK---SKNTTC 293 Query: 293 RKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 K +I + S +IR Y + + D R +E VL G ID + Sbjct: 294 IKKKI---EWSSQIRNYIMHPYKLVKDLRTGYETSDIESVLNGEIDIFLK 340 >gi|195973774|gb|ACG63452.1| peptide chain release factor 2 [Francisella noatunensis] gi|198417115|gb|ACH87844.1| PrfB [Francisella noatunensis subsp. noatunensis] Length = 294 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + I+ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENIVHNCEHISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQH+N TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHINKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|225624841|gb|ACN96555.1| PrfB [Francisella noatunensis subsp. orientalis] Length = 294 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEHISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L I++G+GG+EA + L RMY R Sbjct: 55 LIQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNVFLNIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A + +KV V SD D G K I G + + E+G+HR+ R +++ + H Sbjct: 115 WADSQGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWFRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNDLEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|195973770|gb|ACG63450.1| peptide chain release factor 2 [Francisella philomiragia] Length = 294 Score = 153 bits (386), Expect = 4e-35, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEYISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|167842465|gb|ACA03160.1| RF2 [Dictyostelium fasciculatum] gi|328868131|gb|EGG16511.1| class I peptide chain release factor [Dictyostelium fasciculatum] Length = 425 Score = 153 bits (385), Expect = 5e-35, Method: Composition-based stats. Identities = 100/351 (28%), Positives = 175/351 (49%), Gaps = 20/351 (5%) Query: 10 CDLKNRFAEIE----LRMSESPSVDAYI--KLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +K R E++ + + ++D L +EY I + +I + ++ +L Sbjct: 78 KKMKIRLKELQPIHDRSLVDITTIDQNDTGSLLKEYNHIRVQVDQIDQLPVQFKDYLELV 137 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + +++ + + + + L + D+ S +EI AG GG+ Sbjct: 138 KMAKTAGDREMMQEAQSTTEQLMSQCNE-----LEFKSLMSNDMDNDSAYMEIHAGAGGT 192 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 ++ + L MY ++A+ R + +++ S D GYK+++ ISG + + E+GVH Sbjct: 193 DSMDWTQMLSSMYIKWASRRGFDAQIIDESHGDICGYKKVILKISGPYAYGWTRTENGVH 252 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAAEIDV---DIPLEDIRIDTMRASGSGGQHVNTT 240 ++ R+ +G+ HTS A+V V P + + D+ D+ I+TMR+SG+GGQH N T Sbjct: 253 KLIRMSPFNTNGKRHTSFASVFVYPSSDADEKVAVDLVSRDLVIETMRSSGAGGQHTNKT 312 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG- 298 +SAVRITH P+G+ V S E+SQH+N+ AM +L+++L +E ++ + R Q+G Sbjct: 313 ESAVRITHTPSGLSVNISQERSQHKNKQIAMDLLKSKLLSLELRKRDEQEKNLRSEQMGI 372 Query: 299 SGDRSERI-RTYN-FSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLT 345 +G S I R Y Q RI D R E LQG +D +I +L+ Sbjct: 373 NGFGSGSINRVYTQHPQTRIKDQRTGQESSNFEEFLQGGEELDQMIKEVLS 423 >gi|195973766|gb|ACG63448.1| peptide chain release factor 2 [Francisella philomiragia] Length = 294 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + + L + + ++ + + + +E + Sbjct: 2 ELEDGSIWNNPEYAQNLGRQKVELENVVHNCEYISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|195973762|gb|ACG63446.1| peptide chain release factor 2 [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|195973768|gb|ACG63449.1| peptide chain release factor 2 [Francisella philomiragia] Length = 294 Score = 153 bits (385), Expect = 6e-35, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEYISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K + G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKVEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|195973764|gb|ACG63447.1| peptide chain release factor 2 [Francisella philomiragia] Length = 294 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEYISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +E+ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQEVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K + G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCTLKVEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|195973772|gb|ACG63451.1| peptide chain release factor 2 [Francisella noatunensis subsp. orientalis] Length = 294 Score = 152 bits (384), Expect = 7e-35, Method: Composition-based stats. Identities = 95/303 (31%), Positives = 156/303 (51%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D L + + ++ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNLGRQKVELENVVHNCEHISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L I++G+GG+EA + L RMY R Sbjct: 55 LIQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNVFLNIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A + +KV V SD D G K I G + + E+G+HR+ R +++ + H Sbjct: 115 WADSQGFKVTVDDVSDGDVAGIKGCTLKIEGEYAYGWFRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D R+DT RASG+GGQHVN TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADXRVDTYRASGAGGQHVNKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNDLEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|224001842|ref|XP_002290593.1| peptide chain release factor 1 [Thalassiosira pseudonana CCMP1335] gi|220974015|gb|EED92345.1| peptide chain release factor 1 [Thalassiosira pseudonana CCMP1335] Length = 282 Score = 152 bits (383), Expect = 8e-35, Method: Composition-based stats. Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 15/237 (6%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAAL----------RKWKVEVLSSSDNDDGGY 160 +++IRAGTGG EA LF ++ YE A + W +E LS S D GG Sbjct: 48 DAVIDIRAGTGGDEACLFASEILACYEATAKAGGADESGNGGKSWDLEFLSLSRTDLGGI 107 Query: 161 KEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI--DVDIP 218 KE + G + ++ESGVHRVQRVP + ++ TSA +VAVLP + +P Sbjct: 108 KEASLILKQLGPYGFFQYESGVHRVQRVPVNDN--KLQTSAVSVAVLPSVPDSLIAEALP 165 Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 +++I+TMRASG+GGQHVNTT+SAVR+THIPTGIM E+SQH+N+ +A+K++ +R+ Sbjct: 166 PTELKIETMRASGAGGQHVNTTESAVRVTHIPTGIMAYMQEERSQHKNKAKALKLVASRV 225 Query: 278 YDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 Y + +++ RSA R +G GDRSERIRTYNF Q RITDHR +++ ++ L G Sbjct: 226 YALRKEQERKNRSAARSSLMGGGDRSERIRTYNFPQDRITDHRCKVSVQGVQSWLGG 282 >gi|326493842|dbj|BAJ85383.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 236 Score = 152 bits (383), Expect = 9e-35, Method: Composition-based stats. Identities = 70/224 (31%), Positives = 113/224 (50%), Gaps = 9/224 (4%) Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R+ +++K V+ S ++ G K + GR + + E G HR+ R A G Sbjct: 13 RWGGKQRYKSRVVEKSPGEEAGIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLR 72 Query: 198 HTSAATVAVLPEAAEIDVD--IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 TS A V V+P E +D IP ED+ I RA G GGQ+VN ++AVR+ HIPTGI V Sbjct: 73 QTSFAGVEVMPLLPEESLDVEIPEEDLDISFTRAGGKGGQNVNKVETAVRMVHIPTGIAV 132 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 + E+SQ N+++A++ L+A+L + ++ A+E R + + ++IR Y F Sbjct: 133 RCAEERSQLANKIKALRRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPY 191 Query: 315 R-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 + + D R + V+ G +D I L + +A+E Sbjct: 192 KLVKDVRTACETSDISGVMDGELDPFIKAYLQY----KLSAAAE 231 >gi|323446989|gb|EGB02968.1| hypothetical protein AURANDRAFT_12526 [Aureococcus anophagefferens] Length = 305 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 128/305 (41%), Positives = 184/305 (60%), Gaps = 26/305 (8%) Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT-DDDKSCILEIRAGTGGSEAALFVG 130 D+E+RD A+ E + ++ L +++ LLP+D DD +C++E++A GG EA+LF G Sbjct: 3 DAELRDEARRERELLTPKVATLAHDLTAKLLPRDAVDDAPACLVEVKAAAGGDEASLFAG 62 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 DL MYER+A R+ ++LS + +D GG A + G G + ++FESGVHRVQRVP Sbjct: 63 DLLAMYERFAGRRRHGWDLLSVTKSDCGGVSHAYAEVKGPGAYGALRFESGVHRVQRVPR 122 Query: 191 TEASGRVHTSAATVAVLP---EAAEIDVDIPLEDIRIDTMRASGSGGQH----------- 236 + R+HTS A+V V P E VD ++RIDT RASG+GGQH Sbjct: 123 NDV--RIHTSTASVVVFPAGAEDRGATVDFDPAELRIDTFRASGAGGQHATTRMEIFNPT 180 Query: 237 -------VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 VNTT+SAVR+TH+PTG +V+ E+SQH+N+ +A+KVL +R+ + A Sbjct: 181 SMRAYQNVNTTNSAVRVTHLPTGTVVSIQDERSQHRNKAKALKVLASRVVGAQAAAAAAA 240 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY-IDDIINPLLTAH 347 RSA+R GSGDR+ERIRTYN R+TDHR T ++ VL+G +DD++ L A Sbjct: 241 RSASRAKLAGSGDRAERIRTYNAPHDRVTDHRSGFTANSVDRVLRGDLLDDVVASLEAAD 300 Query: 348 QAKMI 352 + + Sbjct: 301 RDARM 305 >gi|237830659|ref|XP_002364627.1| peptide chain release factor 1, putative [Toxoplasma gondii ME49] gi|211962291|gb|EEA97486.1| peptide chain release factor 1, putative [Toxoplasma gondii ME49] gi|221507504|gb|EEE33108.1| peptide chain release factor, putative [Toxoplasma gondii VEG] Length = 545 Score = 151 bits (382), Expect = 1e-34, Method: Composition-based stats. Identities = 102/252 (40%), Positives = 144/252 (57%), Gaps = 5/252 (1%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +LEI+AG GG +AALF DL MYE ++ R W VL + + GGY+ A + G Sbjct: 278 DAVLEIQAGVGGEDAALFSRDLLGMYEAFSLARGWVFRVLDIQETEKGGYRRASAQVEGP 337 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRIDTMR 228 F + E+G+HRVQRVP TEA GR+ TSA V VLP + +D+ ++ID MR Sbjct: 338 DAFRLLSLEAGIHRVQRVPPTEARGRMQTSATAVTVLPRSGNLEDKIDLSPPTLKIDFMR 397 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG GGQ VN +++AVRITH PTG+ V +SQ +N+ A+++LRA+L ++ + Sbjct: 398 ASGPGGQSVNKSETAVRITHKPTGVSVHCMRTQSQMENKSLALELLRAQLLQQLMRQASE 457 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ--GYIDDIINPLLT 345 ER Q GS DRSE+IRTYNF + +TDHR + + +E L + +I L Sbjct: 458 ERGRALDAQKGSKDRSEKIRTYNFQRDVVTDHRCRMHVNGVEEFLDSSDGLFEIHEVLKR 517 Query: 346 AHQAKMIGSASE 357 + + E Sbjct: 518 QREDMQLAGLLE 529 >gi|145627802|ref|ZP_01783603.1| peptide chain release factor 2 [Haemophilus influenzae 22.1-21] gi|144979577|gb|EDJ89236.1| peptide chain release factor 2 [Haemophilus influenzae 22.1-21] Length = 183 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 71/184 (38%), Positives = 108/184 (58%), Gaps = 7/184 (3%) Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRID 225 +SG F ++ E+G+HR+ R +++ R HTS + V PE + D+RID Sbjct: 1 MSGEYAFGWLRTETGIHRLVRKSPFDSNNRRHTSFSAAFVYPEIDDDIDIEINPADLRID 60 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 RASG+GGQHVN T+SAVRITH+P+GI+V +++SQH+N+ +AMK L+A+LY++E ++ Sbjct: 61 VYRASGAGGQHVNKTESAVRITHMPSGIVVQCQNDRSQHKNKDQAMKQLKAKLYELELQK 120 Query: 285 MANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 ++ + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 121 KNADKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDRFIEA 177 Query: 343 LLTA 346 L A Sbjct: 178 SLKA 181 >gi|195973776|gb|ACG63453.1| peptide chain release factor 2 [Francisella noatunensis] Length = 294 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 17/303 (5%) Query: 22 RMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 + + D + + I+ + + + +E + Sbjct: 2 ELEDGSIWDNPEYAQNFGRQKVELENIVHNCEHISETLETL-------TELLELAEEDES 54 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 E+ +++ ++ + + D + L+I++G+GG+EA + L RMY R Sbjct: 55 LMQEIAKDTQDVTAEIEKLEFRRMFSGQMDPNNAFLDIQSGSGGTEAQDWAEMLMRMYMR 114 Query: 139 YAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVH 198 +A +KV V SD D G K I G + ++ E+G+HR+ R +++ + H Sbjct: 115 WADSHGFKVTVDDVSDGDVAGIKGCALKIEGEYAYGWLRTETGIHRLVRKSPFDSNSKRH 174 Query: 199 TSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A+V + PE +ID++I D+R+DT RASG+GGQH+N TDSAVRITHIPT I+V + Sbjct: 175 TSFASVFISPEVDDDIDIEINPADLRVDTYRASGAGGQHINKTDSAVRITHIPTNIVVQS 234 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQG 314 S++SQH+NR AMK L+++LY++E ++ E++ + K IG G +IR+Y Q Sbjct: 235 QSDRSQHKNRDSAMKQLKSKLYEMELQKRNAEKNALEDSKADIGWG---SQIRSYVLDQS 291 Query: 315 RIT 317 RI Sbjct: 292 RIK 294 >gi|294949753|ref|XP_002786323.1| peptide chain release factor 1, putative [Perkinsus marinus ATCC 50983] gi|239900543|gb|EER18119.1| peptide chain release factor 1, putative [Perkinsus marinus ATCC 50983] Length = 423 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 99/374 (26%), Positives = 162/374 (43%), Gaps = 38/374 (10%) Query: 9 ICDLKNRFAEIELRMSESPS------VDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + N+ EI + VD + +++E A + + ++ + + Sbjct: 52 LKPVLNKLMEIRNAGNRPELAPYFSMVDEMLSVSDEIAKLE------QESAKLERNDISM 105 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + + L R I+ D C +EIR G GG Sbjct: 106 KSMFNAEVDSQLEKIIEIENRLFDHLHTRMSNEGIDCATWHAYVKDASDCTVEIRPGVGG 165 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------------SG 169 EA + D+F M ER+A + W + + G++ I Sbjct: 166 VEAGKWCKDIFDMLERFAGIMGWAAPEVKV---MEQGWQSGYRQIIADFFLKPGVKRTPE 222 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP----LEDIRID 225 +G+F +KFE+G+HRVQRVP+ A TSA +V VLP IP E Sbjct: 223 KGIFGYLKFEAGIHRVQRVPSWPADSLPQTSACSVVVLPREDPNSNLIPVLKPHEYKVWI 282 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T ++SG GGQ VN AVRI HI +G+ ++ N+ A++ + ++ + + K+ Sbjct: 283 TKKSSGPGGQCVNAAHQAVRIRHIESGVEGFADCYRALKSNKALALQQVSQKIMEEKGKK 342 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL---YKLEYVLQGY--IDDI 339 +A ER RK +GSGDRSE+IR+YN+ G + DHR+ + LE ++ G + DI Sbjct: 343 IAKERGIIRKQHMGSGDRSEKIRSYNYLNGTVVDHRLPKSEDGPNALEEIMDGEGLLHDI 402 Query: 340 INPLLTAHQAKMIG 353 I PL + + Sbjct: 403 IEPLRLQEYRQRVQ 416 >gi|159462370|ref|XP_001689415.1| peptide chain release factor [Chlamydomonas reinhardtii] gi|158283403|gb|EDP09153.1| peptide chain release factor [Chlamydomonas reinhardtii] Length = 263 Score = 151 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 74/257 (28%), Positives = 120/257 (46%), Gaps = 13/257 (5%) Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 L DD+ L I AG GG +A + L RMY R+A ++V VL + D Sbjct: 1 WELRRLLCGPYDDRGARLTISAGAGGVDAMDWAEMLERMYMRWAEAGGYQVAVLDRAAGD 60 Query: 157 DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP---EAAEI 213 + G + ++ E G HR+ R A G TS A V V+P Sbjct: 61 EAGITGGR------HAYGYLRCEKGTHRLVRNSPFNAKGLRQTSFAGVDVMPVLGPDDLP 114 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++D+ +D+ I TMR+ G GGQ+VN ++ VRI H+PTG+ V + E+SQ QN+ A+ + Sbjct: 115 ELDLNEKDLEITTMRSGGKGGQNVNKVETGVRILHVPTGLAVKCTQERSQAQNKAIALDL 174 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGD-RSERIRTYNFSQGR-ITDHRINLTLYKLEY 330 L+ARL R+ E + +R + + + R++ F + + D R ++ Sbjct: 175 LKARLLANSREPPMEE-AGSRMGAVADCNTHAHRVQGCLFHPYKLVKDTRTGTETSDVQA 233 Query: 331 VLQGYIDDIINPLLTAH 347 V+ G + + +L Sbjct: 234 VMDGELGGFMAAVLRQR 250 >gi|253795640|ref|YP_003038736.1| putative peptide chain release factor RF1 [Candidatus Hodgkinia cicadicola Dsem] gi|253739948|gb|ACT34283.1| putative peptide chain release factor RF1 [Candidatus Hodgkinia cicadicola Dsem] Length = 240 Score = 150 bits (379), Expect = 2e-34, Method: Composition-based stats. Identities = 109/231 (47%), Positives = 149/231 (64%), Gaps = 1/231 (0%) Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 +LE+RAG GG EA LF L RMYER+AA +W+V + S DGG K VA + G GV Sbjct: 1 MLELRAGVGGREAGLFASQLLRMYERFAAKMRWRVTLTEVSFGCDGGIKRAVADVVGEGV 60 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASG 231 + E+GVHRVQRVP TE GRVHTS T+A+LP A ++ + D++I+TMRASG Sbjct: 61 GLWLAHEAGVHRVQRVPKTETRGRVHTSTVTLALLPSAGASCELGLLNSDLKIETMRASG 120 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 +GGQHVNTTDSAVRITH+PTG+ +S +SQHQNR A+K+LR R+ A + + Sbjct: 121 AGGQHVNTTDSAVRITHLPTGVTACASCRSQHQNRAMALKLLRERVAARALSNAAADAAG 180 Query: 292 NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINP 342 R Q+ G R+ R RTY+F ++TDH++ ++ + VL G + ++ Sbjct: 181 VRAAQVADGARAHRARTYSFVMDKVTDHKLGRSVVGVARVLDGELQLLVRA 231 >gi|332027664|gb|EGI67732.1| Peptide chain release factor 1-like, mitochondrial [Acromyrmex echinatior] Length = 406 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 116/295 (39%), Positives = 170/295 (57%), Gaps = 15/295 (5%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 ++ I Q++ ++ + + +L E+ E ++ +L Sbjct: 95 QLVENIQNLHNLGQQDIEIKKLADEE------------TMLYKEQLNELDERLLHMILTN 142 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 D + I+EI AG GG EA LFV DL+ MY YA EV+ D+ G + + Sbjct: 143 MCKDFYSNIIIEITAGVGGQEAMLFVKDLYDMYIDYAKCLDLDHEVIDIEMTDNKGIRHV 202 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 ISG V + + E GVHRVQRVPATE SGRVHTS A+VA+LP +EI + I D++ Sbjct: 203 SIMISGDQV-DKFQHEGGVHRVQRVPATEKSGRVHTSTASVAILPVPSEIQIMINENDLK 261 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVER 282 I+T R+SG+GGQHVNTTDSAVRITH+P+G + ++SQ++N+ AM LR+ LY+ + Sbjct: 262 IETKRSSGAGGQHVNTTDSAVRITHLPSGLSVTCQVDRSQNRNKKIAMDKLRSILYEQQL 321 Query: 283 KRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT-LYKLEYVLQGYI 336 + + S R+ Q+G G R+E+IRTYN++Q R+TDHR+ + L +QG I Sbjct: 322 NKQTSFTSKLRQKQMGMGFRNEKIRTYNYNQNRVTDHRLGQNGTFNLIEFMQGGI 376 >gi|307128661|ref|YP_003880691.1| peptide chain release factor RF2 [Candidatus Sulcia muelleri CARI] gi|306483123|gb|ADM89993.1| peptide chain release factor RF2 [Candidatus Sulcia muelleri CARI] Length = 337 Score = 149 bits (375), Expect = 7e-34, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 145/269 (53%), Gaps = 7/269 (2%) Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 EI+ L + E++ +I+ N+I ++ + + I++I G GG+E+ +V L+ Sbjct: 58 EIKSLKKRELINKLNKIKNFINQIESQIIFTKKEYKLNAIIQITPGAGGTESCDWVSMLY 117 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 RMY +A + ++ L + D GG K I+ + G F +K E+GVHR+ R+ + Sbjct: 118 RMYTMWAEKNNYSIKELYNLQGDVGGLKYILFEVQGFSPFGFLKGENGVHRLVRISPFDN 177 Query: 194 SGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 S + HTS A+V + P +I + I DI+ T R+ GSGGQ+VN ++ VR+ H PT Sbjct: 178 S-KRHTSFASVYIYPLINDDIKIKINNSDIKWSTFRSGGSGGQNVNKVETGVRLHHKPTN 236 Query: 253 IMVTS-SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 I++ + +SQ +N+ +A+K+L++RLY +E++ R N+ +I G +IR Y Sbjct: 237 IIIENTETRSQIKNKTKALKLLKSRLYYIEKQNKNIIRKKNKLKKIEWG---SQIRNYIM 293 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDI 339 + + D + + V+ G +++ Sbjct: 294 HPYKLVKDLKTGYETSNINSVMDGNLNNF 322 >gi|73667063|ref|YP_303079.1| class I peptide chain release factor domain-containing protein [Ehrlichia canis str. Jake] gi|72394204|gb|AAZ68481.1| Class I peptide chain release factor domain [Ehrlichia canis str. Jake] Length = 173 Score = 148 bits (374), Expect = 9e-34, Method: Composition-based stats. Identities = 106/157 (67%), Positives = 129/157 (82%), Gaps = 1/157 (0%) Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 MKFESGVHRVQRVP TEASGR++TSAATVAVLPE E+D+ I +D+RID R+SG GGQ Sbjct: 1 MKFESGVHRVQRVPETEASGRLYTSAATVAVLPEIEEVDLKIDEKDLRIDVYRSSGPGGQ 60 Query: 236 HVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITHIP+GI+V ++ + +A+KVLRARLY++E+++ +E S RK Sbjct: 61 SVNTTDSAVRITHIPSGIVVIQRDEKSQH-KNKALKVLRARLYNLEKQKRDSEISQMRKS 119 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 QIGSGDRSERIRTYNF Q RITDHRINLTLY+LE ++ Sbjct: 120 QIGSGDRSERIRTYNFPQSRITDHRINLTLYRLEDIM 156 >gi|307176123|gb|EFN65821.1| Peptide chain release factor 1-like, mitochondrial [Camponotus floridanus] Length = 412 Score = 147 bits (370), Expect = 3e-33, Method: Composition-based stats. Identities = 119/357 (33%), Positives = 189/357 (52%), Gaps = 24/357 (6%) Query: 9 ICDLKNRF-----AEIELRMSESPSVD--AYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + D R+ E + S+S + + + ++ I +++ + Sbjct: 58 LEDKIRRYLDYVTKEYKNEASKSNFFEFIDLKTVGHLLDDRTHLVENIQNLQDLAKQDVE 117 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + + L E+ E ++ +L+ + S I+EI AG G Sbjct: 118 MKKLAKEEE------------TLYKEQLNELDERLLDNILINICKESYDSIIIEITAGVG 165 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DL+ MY YA EV+ ND+ G + + +SG + ++E G Sbjct: 166 GQEAMLFVKDLYEMYMGYAKYLDLTHEVIDMETNDNNGIRHVSILLSGDETYKL-QYEGG 224 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 VHRVQR+PATE SGRVHTS A+VA+LP +++ + I +D++I+T RASG+GGQHVNTTD Sbjct: 225 VHRVQRIPATERSGRVHTSTASVAILPTPSKVQIVINDKDLKIETKRASGAGGQHVNTTD 284 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRI ++P+G+ V +SQ +N+ AM LR+ LY+ + + S R+ Q+G Sbjct: 285 SAVRIIYLPSGLSVSCQMHRSQIKNKEVAMIKLRSILYEQQLNKQTTFISELRQKQMGMK 344 Query: 301 DRSERIRTYNFSQGRITDHRI-NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGS 354 R+E++RTYN++Q R+TDHR+ N T+Y L +QG ++ + L Q K + Sbjct: 345 SRNEKVRTYNYNQDRVTDHRLQNGTMYNLPEFMQGGVALEKLEERLHKDIQMKTLLE 401 >gi|225685111|gb|EEH23395.1| peptide chain release factor 1 [Paracoccidioides brasiliensis Pb03] Length = 316 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 105/268 (39%), Positives = 151/268 (56%), Gaps = 26/268 (9%) Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL-- 150 L + L+P+ D C+LE+R G GG EA +F +L RMY + A R + +L Sbjct: 7 LSENLKQALIPRHPFADLPCLLELRPGAGGDEAGIFANELLRMYTMFCANRGLRATLLKK 66 Query: 151 -SSSDNDDGGYKEI----VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 S + GG ++ V I G + ++ E+GVHRVQRVPATE+ GR HTSA +V Sbjct: 67 ESENAGASGGSEDRLAEAVMEIETPGSYETLRTEAGVHRVQRVPATESKGRTHTSAVSVV 126 Query: 206 VLPEAAEIDVD---------------IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +LP + I +++ ++ MRASG+GGQHVN T+SA+R+THIP Sbjct: 127 ILPSFPRNGEEGDGELNFDDPNSDFYIDPQEVNVEKMRASGAGGQHVNKTESAIRLTHIP 186 Query: 251 TGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ---IGSGDRSERI 306 TGI+V +SQH+NR +A ++LRAR+ R+ E R+ +G R ++I Sbjct: 187 TGIVVGMQDSRSQHENRRKAWQLLRARIAQRRREAREEEMVKLRRGAMGGVGKMGRGDKI 246 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQG 334 RTYNF Q R TDHR LTL+ L +++G Sbjct: 247 RTYNFGQNRCTDHRSGLTLHNLVNIMEG 274 >gi|116515195|ref|YP_802824.1| hypothetical protein BCc_269 [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116257049|gb|ABJ90731.1| peptide chain release factor RF-2 [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 365 Score = 146 bits (368), Expect = 5e-33, Method: Composition-based stats. Identities = 93/277 (33%), Positives = 155/277 (55%), Gaps = 7/277 (2%) Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 E E+ K I+ + ++ +D +C L+I++G+GG E+ + L Sbjct: 90 ENDINILKEINIQYKAIKNKIYVLESYMMFNHKNDKNNCYLDIQSGSGGLESQDWTKMLL 149 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 +MY +Y +K+ +++S + D+GG K I +I G+ F ++ E+G+HR+ R +A Sbjct: 150 KMYLKYLYKKKFVTKIISETVGDNGGIKSITLSIKGKFAFGWLRTETGIHRLVRKSPFDA 209 Query: 194 SGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 + HT+ +++ V P ID+++ +++RID R+SG+GGQHVN T+SAVRITH+PTG Sbjct: 210 GKKRHTTFSSIFVYPALTNNIDINLQSKNLRIDVYRSSGAGGQHVNRTESAVRITHLPTG 269 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK--LQIGSGDRSERIRTY 309 I+ + +SQH+N+ A+K L+A+LY++E K+ E+ K I SG+ +IR+Y Sbjct: 270 IVTQCQNSRSQHKNKNTAIKQLKAKLYEIEIKKKKIEKKKINKKKSNIRSGN---QIRSY 326 Query: 310 NFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R L + VL G I + I L Sbjct: 327 ILDDSRIKDMRTKLERKDINNVLNGDIHEFIKKSLKM 363 >gi|66805655|ref|XP_636549.1| class I peptide chain release factor [Dictyostelium discoideum AX4] gi|60464924|gb|EAL63039.1| class I peptide chain release factor [Dictyostelium discoideum AX4] Length = 424 Score = 146 bits (367), Expect = 6e-33, Method: Composition-based stats. Identities = 104/351 (29%), Positives = 186/351 (52%), Gaps = 26/351 (7%) Query: 11 DLKNRFAEIEL-RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 + RF E++L M ES + I++I Y+Q KQ ++L+ + + Sbjct: 83 AIFKRFEEMKLPEMIESGIGIDASNM--------DTINQIKNYNQTKQSIEELNLLSKEF 134 Query: 70 NSDSEIRDLAQIEVLAI--------EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 N E+ ++++ ++ +E+ L DD K C+LEI+AG G Sbjct: 135 NDYLEVVEMSKNIGDNDWLKETRSLINQLFSNCSELEVKALMNGKDDSKGCLLEIQAGAG 194 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G+++ + LF MY ++ A + + VE++ + + + GY+ I G + ++ E G Sbjct: 195 GNDSMDWTKILFEMYCKWGARKGYNVEIID-TADGEFGYRHASLKIDGHNAYGWLRTEMG 253 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ +SG+ HTS A+V V P + + ++I +D+ +T+R+SG+GGQHVN T Sbjct: 254 IHRLIRISPFSSSGKRHTSFASVVVYPISDDSIKINIDPKDLHFETLRSSGAGGQHVNKT 313 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 +SAVRI HIPTGI V +SSE+SQHQN+ + +L+++LY E K+ + R ++G Sbjct: 314 ESAVRIVHIPTGISVLSSSERSQHQNKSNGLLLLKSKLYSHELKKKIEAEKSFR-DELGK 372 Query: 300 GDRS--ERIRTYNFSQG-RITDHRINLTLYKLEYVLQG--YIDDIINPLLT 345 + +R Y+ R+ D R + + ++ +L G +D++I L+ Sbjct: 373 NSWASDSVVRNYSMHPQERVKDQRTGIEVLQISKILDGEEELDNMIKKALS 423 >gi|266622716|ref|ZP_06115651.1| peptide chain release factor 2 [Clostridium hathewayi DSM 13479] gi|288865539|gb|EFC97837.1| peptide chain release factor 2 [Clostridium hathewayi DSM 13479] Length = 275 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 98/273 (35%), Positives = 159/273 (58%), Gaps = 4/273 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E + K T+ + ++ Y +Q+ +D+ +I N +++ + ++E Sbjct: 1 MEEPGFWEDPEKSTKIVQLAKNLKDTVNGYKDLEQQYEDIGVMIEMGNEENDPSVVPEVE 60 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAAL 142 + E + + E IN LL + D + IL + AG GG+E+ + L+RMY R+A Sbjct: 61 EMLKEFKDKLEEIRINTLLSGEYDSD--NAILRLNAGAGGTESCDWCSMLYRMYCRWAEK 118 Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + + VEVL D ++ G K + I+G F +K E GVHR+ R+ A+G+ TS Sbjct: 119 KGYSVEVLDYLDGEEAGIKSVTIQINGENAFGYLKSEKGVHRLVRISPFNAAGKRQTSFV 178 Query: 203 TVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEK 260 + V+P+ E DVDI ED+RIDT R+SG+GGQH+N T SA+RITH+PTGI+V +E+ Sbjct: 179 SCDVMPDIEEDLDVDINEEDLRIDTYRSSGAGGQHINKTSSAIRITHLPTGIVVQCQNER 238 Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SQ QN+ +AM++L+A+LY ++++ A + S R Sbjct: 239 SQFQNKDKAMQMLKAKLYMLKQQENAEKLSDIR 271 >gi|242021553|ref|XP_002431209.1| peptide chain release factor, putative [Pediculus humanus corporis] gi|212516458|gb|EEB18471.1| peptide chain release factor, putative [Pediculus humanus corporis] Length = 413 Score = 145 bits (366), Expect = 8e-33, Method: Composition-based stats. Identities = 94/320 (29%), Positives = 163/320 (50%), Gaps = 9/320 (2%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELEN 95 +++ + + S + + + + EIR + + + Sbjct: 48 SQDLSDLYDNESMKKYISFIESDHVNFSDNFLEKKYIEEIRHSIDKKKEIECEILALNTV 107 Query: 96 EINYLLLPKDTDDDKSCILEIR--AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153 +LP + D + +EI GG EA F +LF MY Y + W Sbjct: 108 NSEEKILPHNFDGGEESQIEIHIFPAVGGEEAKYFAEELFNMYVNYIIYKNWNCIRAEIK 167 Query: 154 DNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEI 213 + G+ T+ G +++ + E+GVHRVQRVP TE GR HTS ++ + ++ Sbjct: 168 QDTKVGH----LTLQGNTIYNSLICEAGVHRVQRVPETEKFGRTHTSTCSLNIFQKSLNN 223 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKV 272 ++ I +DI I+T+R+ G GGQ+VN ++ VRI HIPTG+++ + + Q++N+++A K Sbjct: 224 EIIINPKDIIIETLRSGGPGGQNVNKVETRVRIKHIPTGLIIESQESRYQYENKIKAFKK 283 Query: 273 LRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL 332 L++ L ++ ++ + + A K Q G+ D S++IRTYNF+Q RITDHRIN +LY ++ L Sbjct: 284 LQSTLLNMYEDKINSSKKATLKDQTGNNDYSDKIRTYNFNQNRITDHRINYSLYNMDAFL 343 Query: 333 QG--YIDDIINPLLTAHQAK 350 G +DD+I + + Sbjct: 344 SGGKELDDMIERVKQYKNRE 363 >gi|294894730|ref|XP_002774927.1| peptide chain release factor 1, putative [Perkinsus marinus ATCC 50983] gi|239880702|gb|EER06743.1| peptide chain release factor 1, putative [Perkinsus marinus ATCC 50983] Length = 272 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 88/265 (33%), Positives = 131/265 (49%), Gaps = 17/265 (6%) Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 D C +EIR G GG EA + D+F M ER+A + W + Sbjct: 8 CATWHAYVKDASDCTVEIRPGVGGVEAGKWCKDIFDMLERFAGIMGWAAPEVKV------ 61 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP 218 ++ V +G+F +KFE+G+HRVQRVP+ A TSA +V VLP IP Sbjct: 62 -MEQGVKRTPEKGIFGYLKFEAGIHRVQRVPSWPADSLPQTSACSVVVLPREDPNSNLIP 120 Query: 219 ----LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVL 273 E T ++SG GGQ VN AVRI HI +G+ ++ N+ A++ + Sbjct: 121 VLKPHEYKVWITKKSSGPGGQCVNAAHQAVRIRHIESGVEGFADCYRALKSNKALALQQV 180 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL---YKLEY 330 ++ + + K++A ER RK +GSGDRSE+IR+YN+ G + DHR+ + LE Sbjct: 181 SQKIMEEKGKKIAKERGIIRKQHMGSGDRSEKIRSYNYLNGTVVDHRLPKSEDGPNALEE 240 Query: 331 VLQGY--IDDIINPLLTAHQAKMIG 353 ++ G + DII PL + + Sbjct: 241 IMDGEGLLHDIIEPLRLQEYRQRVQ 265 >gi|322499707|emb|CBZ34781.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 439 Score = 143 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 8/309 (2%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D K+ + ++ K ++ + D + Sbjct: 100 DELDIAEKVCAVLRQLDENVTLHDQLQSKSVRSREDEEIFDMAKEDIATLTDQLRVLEGE 159 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + E + + GG EA+LF +L MY YA R W Sbjct: 160 VNAV----MERRIGSDDLVGSVTNVWNINVEGKAGGEEASLFAAELAEMYRMYATEFRNW 215 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + D + + G GV+ M+ E GVH+VQRVP T+A+G++ TS A Sbjct: 216 KVRPVVKDDGSEA-ANSNEFQVCGEGVYRNMRHEIGVHKVQRVPVTDAAGKMQTSTAVFT 274 Query: 206 VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 ++P + VD+ D +ID +R SG GGQ + ++ + V +TH P+GI V +S Sbjct: 275 MMPVLDPVSVDVHESDCKIDFVRGSGPGGQGMQSSSNCVVLTHKPSGISVKCHQSRSALG 334 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ A++ + ++ K + + Q SG+RS+++RTYN+ Q R+TDHRI Sbjct: 335 NKELALQTVAQQILVQRVKEQNSSLHKAWQNQWSSGERSDKMRTYNYPQNRVTDHRIG-K 393 Query: 325 LYKLEYVLQ 333 Y L ++ Sbjct: 394 DYALSSFME 402 >gi|146088922|ref|XP_001466182.1| peptide chain release factor-like protein [Leishmania infantum JPCM5] gi|134070284|emb|CAM68621.1| peptide chain release factor-like protein [Leishmania infantum JPCM5] Length = 439 Score = 142 bits (358), Expect = 6e-32, Method: Composition-based stats. Identities = 81/309 (26%), Positives = 134/309 (43%), Gaps = 8/309 (2%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D K+ + ++ K ++ + D + Sbjct: 100 DELDIAEKVCAVLRQLDENVTLHDQLQSKSVRSREDEEIFDMAKEDIATLTDQLRVLEGE 159 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + E + + GG EA+LF +L MY YA R W Sbjct: 160 VNAV----MERRIGSDDLVGSVTNVWNINVEGKAGGEEASLFAAELAEMYRMYATEFRNW 215 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + D + + G GV+ M+ E GVH+VQRVP T+A+G++ TS A Sbjct: 216 KVRPVVKDDGSEA-ANSNEFQVCGEGVYRNMRHEIGVHKVQRVPVTDAAGKMQTSTAVFT 274 Query: 206 VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 ++P + VD+ D +ID +R SG GGQ + ++ + V +TH P+GI V +S Sbjct: 275 MMPVLDPVSVDVHESDCKIDFVRGSGPGGQGMQSSSNCVVLTHKPSGISVKCHQSRSALG 334 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ A++ + ++ K + + Q SG+RS+++RTYN+ Q R+TDHRI Sbjct: 335 NKELALQTVAQQILVQRVKEQNSSLHKAWQNQWSSGERSDKMRTYNYPQNRVTDHRIG-K 393 Query: 325 LYKLEYVLQ 333 Y L ++ Sbjct: 394 DYALSSFME 402 >gi|1865700|emb|CAA67778.1| peptide release factor 2 [Bacillus firmus] Length = 282 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 4/272 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R AE++ M+ D + + +++++ + +++ ++L Sbjct: 13 DLEAKQERMAELDEFMTAPDFWDDQEAAQTVINESNGLKEQVNVFLELEEKYENLEVSYE 72 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ ++E E R N+ LL + D + ILE+ G GG+E+ Sbjct: 73 LVKEEADEELEKELEAGVKELISRL--NDFELQLLLSEPYDKNNAILELHPGAGGTESQD 130 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R++ R +KVE + D+ G K + I G + +K E GVHR+ R Sbjct: 131 WASMLLRMYTRWSEQRGFKVETMDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVR 190 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++SGR HTS + V+PE +++DI ED+++DT RASG+GGQH+NTTDSA+RI Sbjct: 191 ISPFDSSGRRHTSFVSCEVMPELDDNVEIDIRTEDLKVDTYRASGAGGQHINTTDSAIRI 250 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 TH+PT +V SE+SQ +NR +AMK+L+A+L Sbjct: 251 THLPTNTVVTCQSERSQIKNRDQAMKMLKAKL 282 >gi|322492443|emb|CBZ27717.1| peptide chain release factor-like protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 439 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 82/309 (26%), Positives = 136/309 (44%), Gaps = 8/309 (2%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D K+ + ++ K ++ ++ D + Sbjct: 100 DELDIAEKVCVVLRQLDENVTLHDQLQSKSVRSREDEEILDMLKEDIATLTEQLRLLEGE 159 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + E + + GG EA+LF +L MY YA R W Sbjct: 160 VNAV----MERRIGSDDLVGSVTNVWNINVEGKAGGEEASLFAAELAEMYRTYATEFRNW 215 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + D + +SG GV+ M E GVH+VQRVP T+A+G++ TS A Sbjct: 216 KVRPVVKDDGSEA-ASSNEFQVSGEGVYRNMHHEIGVHKVQRVPVTDAAGKMQTSTAVFT 274 Query: 206 VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 ++P + VD+ D +ID +R SG GGQ + ++ + V +TH P+GI V +S Sbjct: 275 MMPVLDPVSVDVHESDCKIDFVRGSGPGGQGMQSSSNCVVLTHKPSGISVKCHQSRSALG 334 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ A++++ ++ K + + Q SG+RS+++RTYN+ Q R+TDHRI Sbjct: 335 NKELALQMVAQQILAQRVKEQNSSLHKAWQNQWSSGERSDKMRTYNYPQNRVTDHRIG-K 393 Query: 325 LYKLEYVLQ 333 Y L ++ Sbjct: 394 DYALSSFME 402 >gi|296775660|gb|ADH42937.1| protein chain release factor A [uncultured SAR11 cluster alpha proteobacterium H17925_23J24] Length = 181 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 93/161 (57%), Positives = 120/161 (74%), Gaps = 2/161 (1%) Query: 197 VHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT 256 VHTSAATVA+LPEA ++D+ I D+RID R+SG GGQ VNTTDSAVRITH P+GI+VT Sbjct: 20 VHTSAATVAILPEAEDVDIKINDSDLRIDVFRSSGPGGQSVNTTDSAVRITHGPSGIVVT 79 Query: 257 SSE-KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 + KSQH+N+ +A+K+LRARLY+ E+ + +RS+ RK QIG+GDRSERIRTYNF QGR Sbjct: 80 QQDEKSQHKNKAKALKILRARLYESEKLKKERQRSSERKSQIGTGDRSERIRTYNFPQGR 139 Query: 316 ITDHRINLTLYKLEYVLQGYI-DDIINPLLTAHQAKMIGSA 355 +TDHRIN TL+KL L G I +++ L Q + + Sbjct: 140 VTDHRINFTLHKLTDFLNGEIHEEMNENLRLKDQDLKLKAL 180 >gi|322801718|gb|EFZ22324.1| hypothetical protein SINV_03599 [Solenopsis invicta] Length = 300 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 115/281 (40%), Positives = 164/281 (58%), Gaps = 16/281 (5%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 Q++ ++ + + L + E ++ +L D S I+EI Sbjct: 1 QQDIEMKKLAEEEE------------ALYKGQLNELDERLLDIVLANMYKDFYDSIIIEI 48 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 AG GG EA LFV DL+ MY YA E++ D+ G + + ISG V + Sbjct: 49 TAGVGGQEAMLFVKDLYDMYLGYAKYLDLDHEIIDMEVTDNKGIRHVSVIISGNQV-DKF 107 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 + E GVHRVQRVPATE RVHTS A+VA+LP +EI + I +D++I+T R+SG+GGQH Sbjct: 108 QHEGGVHRVQRVPATERLSRVHTSTASVAILPVPSEIQIMINEKDLKIETKRSSGAGGQH 167 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VNTTDSAVRITH+P+G+ V +SQ +NR AM L++ LY+ + + + S R+ Sbjct: 168 VNTTDSAVRITHLPSGVSVTCEVHRSQDKNRKMAMDKLKSVLYERQLNKQTSFTSELRQK 227 Query: 296 QIGSGDRSERIRTYNFSQGRITDHRINL--TLYKLEYVLQG 334 Q+G G R+E+IRTYN++Q R+TDHR+ TLY L +QG Sbjct: 228 QMGMGFRNEKIRTYNYNQDRVTDHRLGQNGTLYNLAEFMQG 268 >gi|261326766|emb|CBH09739.1| peptide chain release factor 1, putative [Trypanosoma brucei gambiense DAL972] Length = 459 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 143/318 (44%), Gaps = 15/318 (4%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D +L+ I+ I + D ++ D ++ + Sbjct: 111 DELDVSERLSAHLLKINDNIKLKDQLHSHETLSDDDRDILLMVEEDVRELVEKVRDMDSD 170 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + ++ L + LE+ GG EA+LF +L MY YA +R W Sbjct: 171 VNAVMTRRLNLSDALGSCTN----TWSLEVAGKAGGEEASLFASELLEMYRAYATEIRHW 226 Query: 146 KVEVLS--------SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 V+V SS G + + G GV+ ++ E GVH+VQRVP T+ G++ Sbjct: 227 SVDVDGGEGDGEPVSSGGPAVGGNGMKIKVKGEGVYRNLRHEIGVHKVQRVPVTDQDGKM 286 Query: 198 HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A V ++P + VD+ D I+ +R SG GGQ + ++ +AV +TH P+GI V Sbjct: 287 QTSTAVVTLMPVLDPVSVDVHERDCNIEFVRGSGPGGQGMQSSSNAVCLTHKPSGISVKC 346 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRI 316 +S N+ A++++ +L K + Q SG+RS+++RTYN+ Q R+ Sbjct: 347 HQSRSALGNKELALQMVAQQLLVRRVKDQNSSLHETWCNQWSSGERSDKMRTYNYPQNRV 406 Query: 317 TDHRINLTLYKLEYVLQG 334 TDHR+ Y L L G Sbjct: 407 TDHRLGRD-YSLGTFLDG 423 >gi|72386553|ref|XP_843701.1| peptide chain release factor 1 [Trypanosoma brucei TREU927] gi|62175752|gb|AAX69880.1| peptide chain release factor 1, putative [Trypanosoma brucei] gi|70800233|gb|AAZ10142.1| peptide chain release factor 1, putative [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 459 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 88/318 (27%), Positives = 144/318 (45%), Gaps = 15/318 (4%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D +L+ I+ I + D ++ D ++ + Sbjct: 111 DELDVSERLSAHLLKINDNIKLKDQLHSHETLSDDDRDILLMVEEDVRELVEKVRDMDSD 170 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + ++ L + LE+ GG EA+LF +L MY YA +R W Sbjct: 171 VNAVMTRRLNLSDALGSCTN----TWSLEVAGKAGGEEASLFASELLEMYRAYATEIRHW 226 Query: 146 KVEVLS--------SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 V+V SS G + + G GV+ ++ E GVH+VQRVP T+ G++ Sbjct: 227 SVDVDGGEGDGEPVSSGGPAVGGNGMKIKVKGEGVYRNLRHEIGVHKVQRVPVTDQDGKM 286 Query: 198 HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-T 256 TS A V ++P + VD+ +D I+ +R SG GGQ + ++ +AV +TH P+GI V Sbjct: 287 QTSTAVVTLMPVLDPVSVDVHEKDCNIEFVRGSGPGGQGMQSSSNAVCLTHKPSGISVKC 346 Query: 257 SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRI 316 +S N+ A++++ +L K + Q SG+RS+++RTYN+ Q R+ Sbjct: 347 HQSRSALGNKELALQMVAQQLLVRRVKDQNSSLHETWCNQWSSGERSDKMRTYNYPQNRV 406 Query: 317 TDHRINLTLYKLEYVLQG 334 TDHR+ Y L L G Sbjct: 407 TDHRLGRD-YSLGTFLDG 423 >gi|24638472|sp|P96314|RF2_BACFI RecName: Full=Peptide chain release factor 2; Short=RF-2 Length = 294 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 89/272 (32%), Positives = 150/272 (55%), Gaps = 4/272 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + + R AE++ M+ D + + +++++ + +++ ++L Sbjct: 25 DLEAKQERMAELDEFMTAPDFWDDQEAAQTVINESNGLKEQVNVFLELEEKYENLEVSYE 84 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 +++ ++E E R N+ LL + D + ILE+ G GG+E+ Sbjct: 85 LVKEEADEELEKELEAGVKELISRL--NDFELQLLLSEPYDKNNAILELHPGAGGTESQD 142 Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L RMY R++ R +KVE + D+ G K + I G + +K E GVHR+ R Sbjct: 143 WASMLLRMYTRWSEQRGFKVETMDYLPGDEAGVKSVTLLIKGHNAYGYLKAEKGVHRLVR 202 Query: 188 VPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + ++SGR HTS + V+PE +++DI ED+++DT RASG+GGQH+NTTDSA+RI Sbjct: 203 ISPFDSSGRRHTSFVSCEVMPELDDNVEIDIRTEDLKVDTYRASGAGGQHINTTDSAIRI 262 Query: 247 THIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 TH+PT +V SE+SQ +NR +AMK+L+A+L Sbjct: 263 THLPTNTVVTCQSERSQIKNRDQAMKMLKAKL 294 >gi|329913866|ref|ZP_08275999.1| peptide chain release factor RF-2 [Oxalobacteraceae bacterium IMCC9480] gi|327545272|gb|EGF30526.1| peptide chain release factor RF-2 [Oxalobacteraceae bacterium IMCC9480] Length = 164 Score = 140 bits (352), Expect = 4e-31, Method: Composition-based stats. Identities = 65/164 (39%), Positives = 99/164 (60%), Gaps = 7/164 (4%) Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +++ HTS +++ V PE + ++DI D+R+DT RASG+GGQH+N TDSAVR Sbjct: 2 RKSPFDSANGRHTSFSSLFVYPEVDDSLEIDINPADVRVDTYRASGAGGQHINKTDSAVR 61 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDR 302 +TH PTGI+V +++SQH+NR A +L++RLY+ E ++ +++ + K IG G Sbjct: 62 LTHGPTGIVVQCQNDRSQHRNRAEAWAMLKSRLYEHEMRKRMSDQQKLEDSKTDIGWG-- 119 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +IR+Y Q RI D R + + VL G ID+ I L Sbjct: 120 -HQIRSYVLDQSRIKDLRTSFETGNTKAVLDGDIDEFIAASLKQ 162 >gi|229032803|ref|ZP_04188759.1| Peptide chain release factor 2 [Bacillus cereus AH1271] gi|228728476|gb|EEL79496.1| Peptide chain release factor 2 [Bacillus cereus AH1271] Length = 272 Score = 139 bits (349), Expect = 8e-31, Method: Composition-based stats. Identities = 92/277 (33%), Positives = 141/277 (50%), Gaps = 10/277 (3%) Query: 23 MSESPSVDAYIKLTEEYAA---ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + D + ++ K D+ + + H ++ + + +L Sbjct: 1 MMGAGFWDDQQGAQAVINEANALKEMVGKFRQLDETFENLEITHELLKEEYDEDLHEELE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 I++ LL D D + ILE+ G GG+E+ + L RMY R+ Sbjct: 61 SEVKGLIQEMNE-----YELQLLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +KVE + D+ G K + I G + +K E GVHR+ R+ ++SGR HT Sbjct: 116 AEKRGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHT 175 Query: 200 SAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TS 257 S + V+PE + +++I ED++IDT RASG+GGQH+NTTDSAVRITH PT +V Sbjct: 176 SFVSCEVVPEFNDEVEIEIRSEDLKIDTYRASGAGGQHINTTDSAVRITHTPTNTVVTCQ 235 Query: 258 SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 SE+SQ +NR AMK+L+A+LY + + E N + Sbjct: 236 SERSQIKNREHAMKMLKAKLYQKKLEEQQAELDENSR 272 >gi|219129897|ref|XP_002185114.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217403293|gb|EEC43246.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 283 Score = 139 bits (349), Expect = 9e-31, Method: Composition-based stats. Identities = 126/277 (45%), Positives = 173/277 (62%), Gaps = 26/277 (9%) Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC-ILEIRAGTGGSEAALFVG 130 D +++ + E+ +++E LE I +LP+D DD +S I+EIRAGTGG EA+LF Sbjct: 9 DKDMQRECENELQRVDRERAVLEGLIVDAVLPEDEDDYESDAIIEIRAGTGGDEASLFAS 68 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR--------------- 175 +L Y++ A +WKVEVL+ S D GG +E +ISG F Sbjct: 69 ELLEAYQKAAMAIRWKVEVLAESRTDIGGIREASISISGNASFRLPATDSEREDSGPLLG 128 Query: 176 ----MKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI---PLEDIRIDTMR 228 KFESGVHRVQRVP ++ R+HTSA ++AVLP + I + P+ ++RI+TMR Sbjct: 129 PYGAFKFESGVHRVQRVPINDS--RIHTSACSIAVLPFVSSISNEKELLPMSELRIETMR 186 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG+GGQHVNTTDSAVRITH+PTGI E+SQH+N+ +A+K++ AR+ D +R Sbjct: 187 SSGAGGQHVNTTDSAVRITHLPTGITAAIQDERSQHKNKAKALKLITARVRDRQRTDAQL 246 Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 R R +G GDRSERIRTYN+ Q RITDHR ++ Sbjct: 247 ARGELRSNLMGGGDRSERIRTYNYPQDRITDHRCKVS 283 >gi|121704606|ref|XP_001270566.1| mitochondrial peptide chain release factor [Aspergillus clavatus NRRL 1] gi|119398712|gb|EAW09140.1| mitochondrial peptide chain release factor [Aspergillus clavatus NRRL 1] Length = 251 Score = 138 bits (348), Expect = 9e-31, Method: Composition-based stats. Identities = 91/246 (36%), Positives = 133/246 (54%), Gaps = 24/246 (9%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 MY + + R + V+ D E V I G + ++ ESGVHRVQRVPAT Sbjct: 1 MYTAFCSRRGFPSHVIKLDVQDGPSEDRLSEAVIEIDAGGAYDLLRTESGVHRVQRVPAT 60 Query: 192 EASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGSGGQH 236 E GR HTSA +V VLP D I +++R + MRASG+GGQH Sbjct: 61 ETKGRTHTSAVSVMVLPSFPDTATGAEGALNFDDPNSDYYIDPQEVRTEKMRASGAGGQH 120 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+THIPTG +V+ +SQH NR +A +VLRA+L + ++ E R+ Sbjct: 121 VNKTESAIRLTHIPTGTVVSMQDSRSQHANRKKAWQVLRAKLAEARQESREQELVELRRG 180 Query: 296 ---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAK 350 + R ++IRTYN+ Q R TDHR +T++ L+ +L G +D +++ + T + Sbjct: 181 VLGGVARMGRGDKIRTYNYGQSRCTDHRSGITVHNLDDILGGGQGLDTVMDSVRTWLADQ 240 Query: 351 MIGSAS 356 I + S Sbjct: 241 EIAAMS 246 >gi|237840539|ref|XP_002369567.1| peptide chain release factor 1, putative [Toxoplasma gondii ME49] gi|211967231|gb|EEB02427.1| peptide chain release factor 1, putative [Toxoplasma gondii ME49] gi|221503426|gb|EEE29124.1| peptide chain release factor, putative [Toxoplasma gondii VEG] Length = 497 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 97/288 (33%), Positives = 138/288 (47%), Gaps = 45/288 (15%) Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKWKVEVL--------------------- 150 I+EIR GG EA L+ DL MY R+ + W+ L Sbjct: 185 IVEIRPAAGGEEAQLWATDLAEMYTRFFTLQKGWRFSQLQLGGPNAGSRPPTQQRREDAV 244 Query: 151 --------------------SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 S+ GG I + G GV+ ++ ESGVHRVQRVP Sbjct: 245 SGKRRAHANSSDSAAKDDGRSALSGALGGVTCIAFRVEGPGVYRQLLKESGVHRVQRVPR 304 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TEA GR+HTS ATVA++ E V+I D+ I T R+SG GGQ+VN ++AV + H+P Sbjct: 305 TEAQGRIHTSTATVAIVAEHNFRGVEINDADLVIRTARSSGCGGQNVNKVETAVDLLHVP 364 Query: 251 TGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI + E++Q N+ A VL +L + + + R+ Q+ SG RSER+RTY Sbjct: 365 TGIRVFCQQERTQAANKKAAKAVLLKKLAARHEEEVVQQMREERRDQVSSGLRSERVRTY 424 Query: 310 NFSQGRITDHR-INLT-LYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 NF GR+ +HR L+ L+ VL+G + + L + + Sbjct: 425 NFRDGRVNEHRLTGGEGLFSLKSVLEGQLHALHARLDRQEAEQRVQQM 472 >gi|149919721|ref|ZP_01908199.1| peptide chain release factor RF-1 [Plesiocystis pacifica SIR-1] gi|149819492|gb|EDM78922.1| peptide chain release factor RF-1 [Plesiocystis pacifica SIR-1] Length = 311 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 90/294 (30%), Positives = 152/294 (51%), Gaps = 11/294 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYI---KLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I ++ R E+ + + + +L+ E+A ++P+ + + +++ + Sbjct: 8 KIENIAERHEELGEMICDQEVMADKRRFLELSREHAELTPVAMAFAKLVELERQLGETRE 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D ++R+LAQ +V + ++ + E E+ LL PKD +D K+ ILEIRAGTGG E Sbjct: 68 LL----DDPDMRELAQADVRELGGQVEDAETELTRLLTPKDPNDAKNVILEIRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A LFV DL+RMY R++ +W ++ + S+N GG+KEI + G+G ++++KFE GVHR Sbjct: 124 AGLFVADLWRMYNRFSERHRWAIDQVEFSENSAGGFKEITGRVQGKGAWAQLKFERGVHR 183 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244 VQRVPATE+ GR+HTS ATVA++PE + G +T Sbjct: 184 VQRVPATESQGRIHTSTATVAIMPEPRTSTSTSIPRTSSSRPCARAARAG-STSTPRLRG 242 Query: 245 RITHIPTGIMVTSSEKSQHQN---RLRAMKVLRARLYDVERKRMANERSANRKL 295 G V ++S QN ++ +R+R ++R +K Sbjct: 243 PPAPQAHGHRVRCDQRSPAQNASSHEALRSRCSDQIQSKQRRRPWSDRREAQKS 296 >gi|157870704|ref|XP_001683902.1| peptide chain release factor-like protein [Leishmania major] gi|68126969|emb|CAJ05291.1| peptide chain release factor-like protein [Leishmania major strain Friedlin] Length = 439 Score = 138 bits (347), Expect = 1e-30, Method: Composition-based stats. Identities = 80/309 (25%), Positives = 134/309 (43%), Gaps = 8/309 (2%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D K+ + + K ++ ++ D + Sbjct: 100 DELDIAAKVCAVLRQLDENATLHDQLQSKSLRNREDEEILDMVKEDIATLMNQLRLLEGE 159 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKW 145 + E + + GG EA+LF +L MY YA R W Sbjct: 160 VNAV----MERRIGSDDLVGSVTNVWNINVEGKAGGEEASLFAAELAEMYRMYATEFRNW 215 Query: 146 KVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVA 205 KV + D + + G GV+ M+ E GVH+VQRVP T+A+G++ TS A Sbjct: 216 KVRPVVKDDGSEA-ANSNEFQVCGEGVYRNMRHEIGVHKVQRVPVTDAAGKMQTSTAVFT 274 Query: 206 VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQ 264 ++P + VD+ D +ID +R SG GGQ + ++ + V +TH P+GI V +S Sbjct: 275 MMPVLDPVSVDVHENDCKIDFVRGSGPGGQGMQSSSNCVVLTHKPSGISVKCHQSRSALG 334 Query: 265 NRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 N+ A++++ ++ K + + Q SG+RS+++RTYN Q R+TDHR+ Sbjct: 335 NKELALQMVAQQILAQRVKEQNSSLHKAWQNQWSSGERSDKMRTYNHPQNRVTDHRLG-K 393 Query: 325 LYKLEYVLQ 333 Y L ++ Sbjct: 394 DYALSSFME 402 >gi|213419806|ref|ZP_03352872.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 133 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 70/131 (53%), Positives = 100/131 (76%), Gaps = 1/131 (0%) Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG+GGQHVNTTDSA+RITH+PTGI+V E+SQH+N+ +A+ VL AR++ E + Sbjct: 1 RSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGARIHAAETAKRQ 60 Query: 287 NERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 ++ R+ +GSGDRS+R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ Sbjct: 61 QAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQE 120 Query: 347 HQAKMIGSASE 357 HQA ++ + SE Sbjct: 121 HQADLLAALSE 131 >gi|154338826|ref|XP_001565635.1| peptide chain release factor-like protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062687|emb|CAM39130.1| peptide chain release factor-like protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 302 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 4/224 (1%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYA-ALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 + + GG EA+LF +L MY YA KW+V ++ D + + G Sbjct: 44 WNINVEGKAGGEEASLFAAELAEMYRTYAMEFCKWEVCPVAMDDGSEA-CSSNEFQVRGE 102 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 GV+ M E GVH+VQRVP T+A+G++ TS A ++P + VD+ D +ID +R S Sbjct: 103 GVYRNMHHEIGVHKVQRVPVTDATGKMQTSTAVFTLMPVLDPVSVDVHESDCKIDFVRGS 162 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQ + ++ + V +TH P+GI V +S N+ A++++ ++ K + Sbjct: 163 GPGGQGMQSSSNCVVLTHKPSGISVKCHQCRSALGNKELALQMVAQQILARRVKEQNSSL 222 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 + Q SG+RS+R+RTYN+ Q R+TDHRI Y L ++ Sbjct: 223 HKAWQNQWSSGERSDRMRTYNYPQNRVTDHRIG-KDYALSSFME 265 >gi|1149684|emb|CAA60204.1| prfA [Clostridium perfringens] Length = 136 Score = 138 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 80/135 (59%), Positives = 106/135 (78%), Gaps = 1/135 (0%) Query: 201 AATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 ATVAVLPE +++++I +DI+ID RASG+GGQ VNTTDSAVRITH+P+G++V E Sbjct: 1 TATVAVLPEVDDVEIEINDKDIKIDVFRASGNGGQCVNTTDSAVRITHLPSGLVVSCQDE 60 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 KSQ +N+ +AMKVLRARL++ + +RK Q+G+GDRSERIRTYN+ QGR+TDH Sbjct: 61 KSQLKNKEKAMKVLRARLFEQAEAERLAGIAEDRKSQVGTGDRSERIRTYNYPQGRVTDH 120 Query: 320 RINLTLYKLEYVLQG 334 RIN+TLYKL+ L+G Sbjct: 121 RINMTLYKLDSFLEG 135 >gi|95007275|emb|CAJ20495.1| peptide chain release factor 1, putative [Toxoplasma gondii RH] gi|221482780|gb|EEE21111.1| peptide chain release factor, putative [Toxoplasma gondii GT1] Length = 497 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 96/288 (33%), Positives = 137/288 (47%), Gaps = 45/288 (15%) Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKWKVEVL--------------------- 150 I+EIR GG EA L+ DL MY R+ + W+ L Sbjct: 185 IVEIRPAAGGEEAQLWATDLAEMYTRFFTLQKGWRFSQLQLGGPNAGSRPPTQQRREDAV 244 Query: 151 --------------------SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 S+ GG I + G GV+ ++ ESGVHRVQRVP Sbjct: 245 SGKRRAHANSSDSAAKDDGRSALSGALGGVTCIAFRVEGPGVYRQLLKESGVHRVQRVPR 304 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 TEA GR+HTS ATVA++ E V I D+ I T R+SG GGQ+VN ++AV + H+P Sbjct: 305 TEAQGRIHTSTATVAIVAEHNFQGVAINDADLVIRTARSSGCGGQNVNKVETAVDLLHVP 364 Query: 251 TGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 TGI + E++Q N+ A VL +L + + + R+ Q+ SG RSER+RTY Sbjct: 365 TGIRVFCQQERTQAANKKAAKAVLLKKLAARHEEEVVQQMREERRDQVSSGLRSERVRTY 424 Query: 310 NFSQGRITDHR-INLT-LYKLEYVLQGYIDDIINPLLTAHQAKMIGSA 355 NF GR+ +HR L+ L+ +L+G + + L + + Sbjct: 425 NFRDGRVNEHRLTGGEGLFSLKSILEGQLHALHARLDRQEAEQRVQQM 472 >gi|71000757|ref|XP_755060.1| mitochondrial translation release factor (RF-1) [Aspergillus fumigatus Af293] gi|66852697|gb|EAL93022.1| mitochondrial translation release factor (RF-1), putative [Aspergillus fumigatus Af293] gi|159128074|gb|EDP53189.1| mitochondrial translation release factor (RF-1), putative [Aspergillus fumigatus A1163] Length = 256 Score = 137 bits (344), Expect = 3e-30, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 24/246 (9%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 MY + + R + V+ D E V I G + ++ ESGVHRVQRVPAT Sbjct: 1 MYTAFCSRRGLQSNVIKLDVQDGPSDDRLSEAVVEIDADGAYDLLRTESGVHRVQRVPAT 60 Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIP---------------LEDIRIDTMRASGSGGQH 236 E GR HTSA +V VLP E + +++R + MRASG+GGQH Sbjct: 61 ETKGRTHTSAVSVMVLPSFPEAGPSMDSALNFDDPNSDYYVDPQEVRTEKMRASGAGGQH 120 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+THIPTGI+V+ +SQH NR +A +VLRA+L + ++ E R+ Sbjct: 121 VNKTESAIRLTHIPTGIVVSMQDSRSQHANRKKAWQVLRAKLAEARQEAREQELVELRRG 180 Query: 296 ---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAK 350 + R ++IRTYN+ Q R TDHR +T++ L+ VL G ++ I++ + T + Sbjct: 181 VLGGVARMGRGDKIRTYNYGQSRCTDHRSGITVHNLDNVLDGGESLETIMDSVRTWLADQ 240 Query: 351 MIGSAS 356 I + S Sbjct: 241 EIAAIS 246 >gi|145362209|ref|NP_973706.2| peptide chain release factor, putative [Arabidopsis thaliana] gi|110735990|dbj|BAE99969.1| putative peptide chain release factor [Arabidopsis thaliana] gi|330255694|gb|AEC10788.1| Peptide chain release factor 1 [Arabidopsis thaliana] Length = 256 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 110/237 (46%), Positives = 163/237 (68%), Gaps = 1/237 (0%) Query: 30 DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKE 89 + + + +E + + I+ K++E L +++ + + D ++ DLA E+ +E Sbjct: 17 EEFSRANKELRKLRDSMLLINDLRAKQKEIDGLKSLVSESSDDKDMLDLAVGELDEAVEE 76 Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + L+ + LLPKD D++ CILE+RAGTGG EA+LF D+FRMYERY+ + WK ++ Sbjct: 77 EKRLQTLLLKSLLPKDEADERDCILEVRAGTGGEEASLFAMDIFRMYERYSQKKGWKFDI 136 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + +++D GYKE A I G V+ ++KFESG+HRVQR+P TE SGR+HTSA +VA+LP+ Sbjct: 137 VDITESDMKGYKEASAAICGASVYGKLKFESGIHRVQRIPITEKSGRIHTSAISVAILPQ 196 Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQN 265 A E+DV + ED+RIDT R+ GSGGQH NTT+SAVRI H+PTG+MV+ E+SQH + Sbjct: 197 ADEVDVQLRNEDLRIDTYRSGGSGGQHANTTNSAVRIIHLPTGMMVSIQDERSQHMS 253 >gi|147836146|emb|CAN74766.1| hypothetical protein VITISV_041859 [Vitis vinifera] Length = 450 Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 5/332 (1%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D K E ++ + + ++ + D+ L Sbjct: 117 EEMIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLF 176 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + A + L + L + D + L I+AG G + ++ L MY ++ Sbjct: 177 EQAYNASVDVSKFL-YQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKW 235 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K V+ + +GG K + + E GVH + R E+ T Sbjct: 236 AEKQGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILHEQT 295 Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +A V V+P E D+ ++D + S G + T AV I HIPTGI V +S Sbjct: 296 GSAVVDVIPLFLETAPDLQIDDGDLRISSPSCHGVE-QGRTGHAVCIQHIPTGISVQSSG 354 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-IT 317 E+S N++RA+ L+A+L ++ E ++ I + R Y F + + Sbjct: 355 ERSHFANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADM-WKQETRRYVFHPNKLVQ 413 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 D + ++ L L VL G I+ +I ++ QA Sbjct: 414 DVKTDIQLPDLNSVLDGNIEPLIGANISMRQA 445 >gi|330951102|gb|EGH51362.1| peptide chain release factor 1 [Pseudomonas syringae Cit 7] Length = 111 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 61/111 (54%), Positives = 79/111 (71%), Gaps = 1/111 (0%) Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+P+GI+V E+SQH+NR RAM L A+L D + AN ++ RKL +GSGDRSERI Sbjct: 1 HLPSGIVVECQEERSQHKNRARAMSWLSAKLNDQQTSAAANAIASERKLLVGSGDRSERI 60 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 RTYNF QGR+TDHR+NLTLY L+ VL G +D +I PLL +QA + + E Sbjct: 61 RTYNFPQGRVTDHRVNLTLYSLDEVLAGGVDAVIEPLLAEYQADQLAALGE 111 >gi|119493428|ref|XP_001263904.1| mitochondrial peptide chain release factor [Neosartorya fischeri NRRL 181] gi|119412064|gb|EAW22007.1| mitochondrial peptide chain release factor [Neosartorya fischeri NRRL 181] Length = 256 Score = 136 bits (341), Expect = 7e-30, Method: Composition-based stats. Identities = 92/246 (37%), Positives = 134/246 (54%), Gaps = 24/246 (9%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGG---YKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 MY + R + V+ D E V I G + ++ ESGVHRVQRVPAT Sbjct: 1 MYTAFCTRRGLRSNVIKLDVQDGPSDDRLSEAVVEIDADGAYDLLRTESGVHRVQRVPAT 60 Query: 192 EASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGSGGQH 236 E GR HTSA +V VLP + D + +++R + MRASG+GGQH Sbjct: 61 ETKGRTHTSAVSVMVLPSFPEAGASMDSALNFDDPDSDYYVDPQEVRTEKMRASGAGGQH 120 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+THIPTGI+V+ +SQH NR +A +VLRA+L + ++ E R+ Sbjct: 121 VNKTESAIRLTHIPTGIVVSMQDSRSQHANRKKAWQVLRAKLAEARQEAREQELVELRRG 180 Query: 296 ---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAK 350 + R ++IRTYN+ Q R TDHR +T++ L+ VL G ++ I++ + T + Sbjct: 181 VLGGVARMGRGDKIRTYNYGQSRCTDHRSGITVHNLDNVLDGGESLETIMDSVRTWLADQ 240 Query: 351 MIGSAS 356 I + S Sbjct: 241 EIAAIS 246 >gi|71650872|ref|XP_814125.1| peptide chain release factor 1 [Trypanosoma cruzi strain CL Brener] gi|70879071|gb|EAN92274.1| peptide chain release factor 1, putative [Trypanosoma cruzi] Length = 456 Score = 135 bits (340), Expect = 8e-30, Method: Composition-based stats. Identities = 80/347 (23%), Positives = 149/347 (42%), Gaps = 26/347 (7%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D +++ ++ + +K + ++ D E + Sbjct: 99 EEIDVAEEISGYLVKLNENVKLRDQILLEKDSVGEDRDLLSILEEDMESLLNQVRNMDDC 158 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKW 145 + ++ +LE+ GG EA+LF +L MY Y+ +R W Sbjct: 159 VNGV----MARRLESSDTLGSSSRAWVLEVTGKAGGEEASLFAAELAEMYREYSTGVRNW 214 Query: 146 KVEVLS-----------------SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 ++E + + G V+ ++ E GVH+VQRV Sbjct: 215 RIEEAENGAGGAAGGGGGGGDASALSAPALASTGVKFKAIGDNVYRNLRHEIGVHKVQRV 274 Query: 189 PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 P T+ G++ TS A V ++P + V++ D +I+ +R SG GGQ + ++ +AV +TH Sbjct: 275 PLTDQDGKMQTSTAVVTLMPVLDPVSVNVHENDCKIEFVRGSGPGGQGMQSSSNAVCLTH 334 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 IP+GI V +S N+ A++++ +L K + + Q SG+RS+++R Sbjct: 335 IPSGISVKCHQSRSALGNKEIALQLVAQQLLAQRVKDQNSSLHEAWRNQWSSGERSDKMR 394 Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 TYN+ Q R+TDHR+ + L ++G + + + L A K + Sbjct: 395 TYNYPQNRVTDHRLG-KDFPLNTFMEGGNGLKGLHDDLNAAEDRKQL 440 >gi|76664975|emb|CAJ17928.1| protein chain release factor 2 [Candidatus Phytoplasma solani] Length = 175 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 66/166 (39%), Positives = 102/166 (61%), Gaps = 3/166 (1%) Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR+ RV +++ + HTS + VLPE + +++ ED++ID R+SG+GGQHVNTTD Sbjct: 1 HRLVRVSPFDSNAKRHTSFVSCDVLPEIKDEIKINVKPEDLKIDVFRSSGAGGQHVNTTD 60 Query: 242 SAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 SAVRITH+PTG++V +E+SQ +NR +A+++L+ +L+ + K E + Sbjct: 61 SAVRITHLPTGLVVGCQNERSQIKNREKALQMLKTKLFQLALKEQKEETVKQFQSDQKEI 120 Query: 301 DRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y F + DHR N ++LE V+ G +DD IN LT Sbjct: 121 GWGSQIRSYVFHPYKMVKDHRTNQENFQLEQVMDGNLDDFINGYLT 166 >gi|322829249|gb|EFZ32717.1| peptide chain release factor 1, putative [Trypanosoma cruzi] Length = 476 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 81/350 (23%), Positives = 149/350 (42%), Gaps = 29/350 (8%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 +D +++ ++ + +K + ++ D E + Sbjct: 116 EEIDVAEEISGYLVKLNENVKLRDQILLEKDPVGEDRDLLSMLEEDMESLLNQVRNMDDC 175 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA-LRKW 145 + ++ +LE+ GG EA+LF +L MY Y+ +R W Sbjct: 176 VNGV----MARRLESSDTLGSSSRAWVLEVTGKAGGEEASLFASELAEMYREYSTGVRNW 231 Query: 146 KVEVLS--------------------SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ++E + + G V+ ++ E GVH+V Sbjct: 232 RIEEAENGAGGGGGGAAGGGGGGDASALSAPALASTGVKFKAIGDSVYRNLRHEIGVHKV 291 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 QRVP T+ G++ TS A V ++P + V++ D +I+ +R SG GGQ + ++ +AV Sbjct: 292 QRVPLTDQDGKMQTSTAVVTLMPVLDPVSVNVHENDCKIEFVRGSGPGGQGMQSSSNAVC 351 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIP+GI V +S N+ A++++ +L K + + Q SG+RS+ Sbjct: 352 LTHIPSGISVKCHQSRSALGNKETALQLVAQQLLAQRVKDQNSSFHEAWRNQWSSGERSD 411 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQAKMI 352 ++RTYNF Q R+TDHR+ + L ++G + + + L A K + Sbjct: 412 KMRTYNFPQNRVTDHRLG-KDFPLNTFMEGGNGLKGLHDDLNAAEDRKQL 460 >gi|30692917|ref|NP_198466.2| HCF109 (HIGH CHLOROPHYLL FLUORESCENT 109); translation release factor/ translation release factor, codon specific [Arabidopsis thaliana] gi|332006669|gb|AED94052.1| high chlorophyll fluorescent 109 protein [Arabidopsis thaliana] Length = 391 Score = 134 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 68/254 (26%), Positives = 124/254 (48%), Gaps = 2/254 (0%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ +E + +++ D K E ++++ + ++ + + K +D T++ Sbjct: 104 LQQLEQEITNLESKATDTSFWDDRTKAQETLSSLNDLKDRMRLLSEFKTMVEDAETIVKL 163 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 E + I KE+ + ++ L D + ++ I AG GG++A + Sbjct: 164 TEEMDSTDVSLLEEAMGIIKELNKSLDKFELTQLLSGPYDKEGAVVYITAGAGGTDAQDW 223 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY R+ +++K +V+ S+ ++ G K I GR + + E G HR+ R Sbjct: 224 ADMLLRMYMRWGEKQRYKTKVVEMSNGEEAGIKSATLEIEGRYAYGYISGEKGTHRIVRQ 283 Query: 189 PATEASGRVHTSAATVAVLP--EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRI 246 + G TS + V V+P + ++IP ED+ I RA G GGQ+VN ++AVRI Sbjct: 284 SPFNSKGLRQTSFSGVEVMPLLPEEAVGIEIPEEDLDISFTRAGGKGGQNVNKVETAVRI 343 Query: 247 THIPTGIMVTSSEK 260 THIPTG+ V +++ Sbjct: 344 THIPTGVAVRCTDR 357 >gi|302820744|ref|XP_002992038.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii] gi|300140160|gb|EFJ06887.1| hypothetical protein SELMODRAFT_430253 [Selaginella moellendorffii] Length = 654 Score = 133 bits (333), Expect = 6e-29, Method: Composition-based stats. Identities = 57/200 (28%), Positives = 102/200 (51%), Gaps = 6/200 (3%) Query: 152 SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 SS ++ G K I GR + + E G HR+ R + G TS A V V+ Sbjct: 116 SSPGEEAGIKSATLEIDGRYAYGYISGEKGTHRLVRQLPFNSKGLRQTSFAGVEVMHVRT 175 Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAM 270 +++ P + R+ G GGQ+VN ++AVR+THIPTGI + S ++SQ QN+++A+ Sbjct: 176 KLNSTQPGQA---TLCRSGGKGGQNVNMVETAVRVTHIPTGIALRCSEKRSQLQNKIKAI 232 Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLE 329 +L+++L + + A E R + + ++IR Y F + + D R N+ + Sbjct: 233 VLLKSKLLVILEDQRAAEIKEIR-GDVVKAEWGQQIRNYVFHPYKLVMDLRTNVETSDIS 291 Query: 330 YVLQGYIDDIINPLLTAHQA 349 ++ G ++ ++ L + Q+ Sbjct: 292 GIMDGKLEPLLTAYLMSKQS 311 >gi|146332693|gb|ABQ22852.1| mitochondrial peptide chain release factor 1 precursor-like protein [Callithrix jacchus] Length = 192 Score = 132 bits (331), Expect = 9e-29, Method: Composition-based stats. Identities = 84/185 (45%), Positives = 121/185 (65%), Gaps = 6/185 (3%) Query: 179 ESGVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQ 235 E G+HRVQR+P S R+ HT +V +LP+ E+DV + +D+RIDT RA G+GGQ Sbjct: 1 EGGIHRVQRIPEVGLSSRMQRIHTGTMSVIILPQPDEVDVKLDPKDLRIDTFRARGAGGQ 60 Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVNTTDSAVR+ HIPTG++V E+SQ +N+ A+ VLRARLY ++ ++ + RK Sbjct: 61 HVNTTDSAVRLVHIPTGLVVECQQERSQIRNKEIALSVLRARLYQQIIEKNKCQQHSTRK 120 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTAHQAKMI 352 LQ+G+G +SERI TYNF+Q R+TDHRI + ++ + G +D +I LL + + I Sbjct: 121 LQVGTGAQSERILTYNFTQDRVTDHRIAYEVRDIKEFVCGGKALDQLIQRLLQSADEEAI 180 Query: 353 GSASE 357 + Sbjct: 181 VELLD 185 >gi|71028468|ref|XP_763877.1| peptide chain release factor 2 [Theileria parva strain Muguga] gi|68350831|gb|EAN31594.1| peptide chain release factor 2, putative [Theileria parva] Length = 376 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 73/266 (27%), Positives = 126/266 (47%), Gaps = 24/266 (9%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR----------KWKVEVLS 151 P D C L I++G GGSE+ + L MY+++ + +++ + Sbjct: 77 DPTRKYDRNYCKLIIKSGVGGSESFDWCRILAEMYKKFISSYDPPPGPNLPTSLRLKEVD 136 Query: 152 SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 GG++ + + G + +K E+G HR+ R + + T+ ATV +P + Sbjct: 137 VCPGTSGGFRRVEYDVIGDYAYRLLKGENGTHRLIRNSPFNSDHKRQTTFATVQAVPILS 196 Query: 212 EIDVDIPL---------EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKS 261 + D +I +D+ I++MR+SG GGQ+VN ++AVR+ H PTG+ V E++ Sbjct: 197 DTDEEIINFKKNRQILKKDLIIESMRSSGKGGQNVNKVETAVRVYHKPTGLSVKVQQERT 256 Query: 262 QHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ-IGSGDRSERIRTYNF-SQGRITDH 319 QNR A+++L + + K++ + + +G+ IRTY + R+ DH Sbjct: 257 NTQNREIAIRMLTKLVDEHYLKKLNEKLDDIKGADLVGT--WGSHIRTYTLNPEQRVKDH 314 Query: 320 RINLTLYKLEYVLQGYIDDIINPLLT 345 R N K VL G + II LL Sbjct: 315 RTNFETAKATNVLNGDLLPIILNLLQ 340 >gi|294623963|ref|ZP_06702760.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292601738|gb|EFF45678.1| peptide chain release factor 2 [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 178 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 62/142 (43%), Positives = 83/142 (58%), Gaps = 6/142 (4%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 I++DI D+R D R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQNR Sbjct: 6 EVDDNIEIDINPADLRTDVYRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNR 65 Query: 267 LRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 AMK+L A+LY++E ++ ER A K IG G +IR Y Q RI D R + Sbjct: 66 DNAMKMLAAKLYELEVQKRNVERDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIE 122 Query: 325 LYKLEYVLQGYIDDIINPLLTA 346 + VL G +D+ + L A Sbjct: 123 RSDTQKVLDGDLDEFVEASLKA 144 >gi|325190234|emb|CCA24711.1| peptide chain release factor putative [Albugo laibachii Nc14] Length = 372 Score = 131 bits (328), Expect = 2e-28, Method: Composition-based stats. Identities = 96/296 (32%), Positives = 159/296 (53%), Gaps = 13/296 (4%) Query: 19 IELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEI 75 + S I +++ +A+ + ++S Y + E ++L+ ++ + D E+ Sbjct: 79 LREESSTLGFWGNAANAIAISQRLSAMESQLQRVSAYRAQFLETKELY-LLSEAEKDQEM 137 Query: 76 RDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRM 135 + + +I K ++ L L+ DD C LEI+AG GG+++ +V L +M Sbjct: 138 MEECFETMESIRKAVQTLS----MELMLSGKDDRLPCFLEIQAGAGGTDSQDWVAMLSKM 193 Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 YER+A +K+KV+ + + GG++ + I G + +K E+GVHR+ R+ + Sbjct: 194 YERWAQHKKYKVQYVDGLRTELGGFRSVCLRIDGDLAYGWIKLEAGVHRLIRLSPYDQQK 253 Query: 196 RVHTSAATVAVLPEAAEIDVD---IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG 252 R HTS A V V P A + +D+RIDT RA+G GGQHVN+TDSAVRITH+P+G Sbjct: 254 RRHTSFAQVRVYPIEAAEATTRTAVSGKDLRIDTFRATGPGGQHVNSTDSAVRITHLPSG 313 Query: 253 IMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 I+V SE+SQH+N+ +AM+VL A+L + E + + K G ++R Sbjct: 314 IVVQCQSERSQHRNKAQAMEVLLAKLNNQEIAEQQSAKRQYAKGL-GDNAWGNQVR 368 >gi|297739884|emb|CBI30066.3| unnamed protein product [Vitis vinifera] Length = 414 Score = 129 bits (325), Expect = 5e-28, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 6/332 (1%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D K E ++ + + ++ + D+ L Sbjct: 82 EEMIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLF 141 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + A + L + L + D + L I+AG G + ++ L MY ++ Sbjct: 142 EQAYNASVDVSKFL-YQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKW 200 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K V+ + +GG K + + E GVH + R E+ T Sbjct: 201 AEKQGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILH-ET 259 Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +A V V+P E D+ ++D + S G + T AV I HIPTGI V +S Sbjct: 260 GSAVVDVIPLFLETAPDLQIDDGDLRISSPSCHGVE-QGRTGHAVCIQHIPTGISVQSSG 318 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-IT 317 E+S N++RA+ L+A+L ++ E ++ I + R Y F + + Sbjct: 319 ERSHFANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADM-WKQETRRYVFHPNKLVQ 377 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 D + ++ L L VL G I+ +I ++ QA Sbjct: 378 DVKTDIQLPDLNSVLDGNIEPLIGANISMRQA 409 >gi|169607138|ref|XP_001796989.1| hypothetical protein SNOG_06624 [Phaeosphaeria nodorum SN15] gi|160707160|gb|EAT86455.2| hypothetical protein SNOG_06624 [Phaeosphaeria nodorum SN15] Length = 294 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 88/309 (28%), Positives = 150/309 (48%), Gaps = 32/309 (10%) Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 + +L ++I D +D E+R LA ++ ++ + L+P CIL Sbjct: 2 LTESVTELTSLIHDPTTDPELRSLAADDLGESRTQLANASQSLITSLVPVHPFAHLPCIL 61 Query: 115 EIRAGTGGSEAALFVGDLFRMYERYAALRKWKV---EVLSSSDNDDGGYKEIVATISGRG 171 EIR G GGSEAA+F GDLFRMY+ + ++ + + + + G A Sbjct: 62 EIRPGAGGSEAAIFAGDLFRMYQTFCNRSGFRTSLLKYENVNGTTEAGVPLSEAIFEIEN 121 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + F S E E D I ++I+++ MRASG Sbjct: 122 ADAYGVFRS-------QEDFEN-----------------PESDYYIDQKEIKLEVMRASG 157 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +GGQHVN T+SAVR+THIPT +V+ +SQH+N+ A ++R+R+ + R++ E Sbjct: 158 AGGQHVNKTESAVRLTHIPTNTVVSMQDSRSQHKNKESAWSLMRSRIAQLRREKREEEMV 217 Query: 291 ANRKLQIG--SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY--IDDIINPLLTA 346 R+ +G R +++RTYN+ Q R+TDHR +T++ L+ V+ G ++ ++ + Sbjct: 218 NLRRSVVGVAKMGRGDKVRTYNWGQQRVTDHRSGITVHDLDDVMGGGQTLEKVMESVRGW 277 Query: 347 HQAKMIGSA 355 + + + Sbjct: 278 LMERDVEAL 286 >gi|323445681|gb|EGB02173.1| hypothetical protein AURANDRAFT_35500 [Aureococcus anophagefferens] Length = 268 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 71/260 (27%), Positives = 117/260 (45%), Gaps = 13/260 (5%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 D C LEI AG GG +A + + RMY R+ R + V S+ D Sbjct: 1 ELEAAMTGPYDGCDCRLEITAGAGGLDAQEWTAMVARMYARFGEKRGFSVVEAERSEGDH 60 Query: 158 GGYKE-IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 G + + I G F + E G HR+ R ++ + TS A+V P+ + D Sbjct: 61 PGCVKGVSLEIRGANAFGLFRGEKGAHRLVRQSPFNSAAKRQTSFASVEPTPDLPDDHPD 120 Query: 217 IP-------LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 +P D+ + T RA G+GGQ+VN ++AVR+TH+PTG+ V + E++Q N+ Sbjct: 121 LPADVAELDPADLEVTTARAGGAGGQNVNKVETAVRMTHVPTGLRVRCARERTQGANKAI 180 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYK 327 A+ +LRA+L ++ A + R ++ D +R+Y + + D + Sbjct: 181 ALTMLRAKLVAAMAEQRAATLADIRGDRVA-ADFGASVRSYVLHPYKLVKDDK--HETPH 237 Query: 328 LEYVLQGYIDDIINPLLTAH 347 VL G + ++ L Sbjct: 238 ATDVLDGDLGPFLDAELRRR 257 >gi|225441347|ref|XP_002274658.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 417 Score = 129 bits (324), Expect = 6e-28, Method: Composition-based stats. Identities = 75/332 (22%), Positives = 133/332 (40%), Gaps = 6/332 (1%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E + + D K E ++ + + ++ + D+ L Sbjct: 85 EEMIRKYNLWDDVTKSNEILGKLADSSKVVDTLKDLTYKAEEAKLITQLVEMDAINHGLF 144 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + A + L + L + D + L I+AG G + ++ L MY ++ Sbjct: 145 EQAYNASVDVSKFL-YQYEMSKLLRGQFDMEGACLTIKAGPRGIYSEIWAEQLLSMYTKW 203 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A + +K V+ + +GG K + + E GVH + R E+ T Sbjct: 204 AEKQGYKGRVVEKYASKNGGIKSATIEFESEYGYGYLSGERGVHHMIRSSDDESILH-ET 262 Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +A V V+P E D+ ++D + S G + T AV I HIPTGI V +S Sbjct: 263 GSAVVDVIPLFLETAPDLQIDDGDLRISSPSCHGVE-QGRTGHAVCIQHIPTGISVQSSG 321 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-IT 317 E+S N++RA+ L+A+L ++ E ++ I + R Y F + + Sbjct: 322 ERSHFANKMRALNRLKAKLVVTAMEQGIPEVGGIKREAIADM-WKQETRRYVFHPNKLVQ 380 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 D + ++ L L VL G I+ +I ++ QA Sbjct: 381 DVKTDIQLPDLNSVLDGNIEPLIGANISMRQA 412 >gi|255017364|ref|ZP_05289490.1| peptide chain release factor 2 [Listeria monocytogenes FSL F2-515] Length = 231 Score = 129 bits (324), Expect = 7e-28, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 120/236 (50%), Gaps = 9/236 (3%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH---TVIGD 68 ++ R AE+E +M + + + + + ++E++ + ++ + Sbjct: 1 MEVRIAELEDQMLDPNFWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKE 60 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + +L + + L+ D D + ILE+ G GG+E+ + Sbjct: 61 EADEDLQEELEKDIKAYMATISE-----FELKLMLSDPYDKNNAILELHPGAGGTESQDW 115 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L RMY+R++ + +KVE+L D+ G K + I G + +K E GVHR+ R+ Sbjct: 116 GSMLLRMYQRWSEKKGFKVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRI 175 Query: 189 PATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 ++SGR HTS +V V+PE +I++++ ED++IDT RA+G+GGQH+NTTDSA Sbjct: 176 SPFDSSGRRHTSFVSVDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSA 231 >gi|238506130|ref|XP_002384267.1| mitochondrial translation release factor (RF-1), putative [Aspergillus flavus NRRL3357] gi|220690381|gb|EED46731.1| mitochondrial translation release factor (RF-1), putative [Aspergillus flavus NRRL3357] Length = 267 Score = 129 bits (323), Expect = 8e-28, Method: Composition-based stats. Identities = 85/239 (35%), Positives = 131/239 (54%), Gaps = 24/239 (10%) Query: 135 MYERYAALRKWKVEVLSSSDND---DGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 MY + + R ++ V+ D + E V + G + ++ ESGVHRVQRVPAT Sbjct: 1 MYTAFCSRRGFRSNVIKLEVGDGPAEDRLNEAVMEVEADGAYEILRTESGVHRVQRVPAT 60 Query: 192 EASGRVHTSAATVAVLPEAA---------------EIDVDIPLEDIRIDTMRASGSGGQH 236 E GR HTSA +V VLP D + +++R + MRA G+GGQH Sbjct: 61 ETKGRTHTSAVSVMVLPSFPETGGAMDNALNFDDPNSDYYVDPQEVRSEKMRAGGAGGQH 120 Query: 237 VNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKL 295 VN T+SA+R+TH+PTGI+V+ +SQH NR +A ++LRARL + ++ + R+ Sbjct: 121 VNKTESAIRLTHMPTGIVVSMQDSRSQHANRKKAWQILRARLAEARQEAREQKFVELRRG 180 Query: 296 ---QIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDIINPLLTAHQA 349 + R ++IRTYN+ Q R TDHR ++T++ L VL G ++ ++ T ++ Sbjct: 181 VLGGVARMGRGDKIRTYNYGQSRCTDHRSSITIHNLNDVLDGGEGLETVMESFTTVQES 239 >gi|161833777|ref|YP_001597973.1| peptide chain release factor RF2 [Candidatus Sulcia muelleri GWSS] gi|152206267|gb|ABS30577.1| peptide chain release factor RF2 [Candidatus Sulcia muelleri GWSS] Length = 214 Score = 128 bits (322), Expect = 9e-28, Method: Composition-based stats. Identities = 71/214 (33%), Positives = 116/214 (54%), Gaps = 8/214 (3%) Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L+RMY +A +K++ ++S D G + I + G F +K E+GVHR+ R+ Sbjct: 1 MLYRMYIMWAEKHNFKIKKINSLQGDIIGLRSITFIVKGLSPFGYLKGENGVHRLVRISP 60 Query: 191 TEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 + S + HTS A+V + P +I++ I DI +T R+ GSGGQ+VN +S VR+ H Sbjct: 61 FDNS-KRHTSFASVYIYPLIDDDINIKINTSDISWNTFRSRGSGGQNVNKVESGVRLHHH 119 Query: 250 PTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 PT I++ S KSQ N+++A+K+L++RL+ +E+K + +K + S +IR Sbjct: 120 PTNIIIENSETKSQFNNKIKALKLLKSRLFYIEKKSKNTTCNKLKKK----IEWSSQIRN 175 Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIIN 341 Y + + D R +E VL G ID + Sbjct: 176 YIMHPYKLVKDLRTGYETSDIESVLNGEIDIFLK 209 >gi|326478702|gb|EGE02712.1| peptide chain release factor 1 [Trichophyton equinum CBS 127.97] Length = 360 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 100/329 (30%), Positives = 168/329 (51%), Gaps = 30/329 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L A + + +ES + I+P+ + + +D + +L +I + + Sbjct: 26 ALAAEHATLTAKQAESFE----RAAAKRIGEIAPVANALKDWDTAHESITELQGLIDEPS 81 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +D+E++ LA+ ++ + L + + L+P+ D C++EIR G GG EA LF Sbjct: 82 TDTELKSLAEDDITTTIGTLSSLSDTLKRALIPRHPFADMPCLIEIRPGAGGDEAGLFAA 141 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGG------YKEIVATISGRGVFSRMKFESGVHR 184 + RMY + + R + ++ D G E+V + G ++ ++ E+GVHR Sbjct: 142 KMLRMYTSFCSSRGLRTTIIKMEAEDGVGAGAEERLSEVVMEVETPGSYNILRTEAGVHR 201 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDI--------------PLEDIRIDTMRAS 230 VQRVPATEA GR HTSA +V +LP E + + +D++ + RAS Sbjct: 202 VQRVPATEAKGRTHTSAVSVMILPSFPENNQEDSPLNFDDPNSDYYVNPQDVQSEKFRAS 261 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G+GGQHVN T+SAVR+THIPTG +++ +SQH+NR +A +LRA+L R+ E Sbjct: 262 GAGGQHVNKTESAVRLTHIPTGTVISMQDSRSQHENRRKAWLLLRAKLAQARREAREQEM 321 Query: 290 SANRKLQIGSGD---RSERIRTYNFSQGR 315 R+ +G + R ++I + F + Sbjct: 322 MELRRGAMGGVNKTGRGDKI--HLFQHNQ 348 >gi|313636342|gb|EFS02127.1| peptide chain release factor 2 [Listeria seeligeri FSL S4-171] Length = 142 Score = 128 bits (321), Expect = 1e-27, Method: Composition-based stats. Identities = 62/142 (43%), Positives = 92/142 (64%), Gaps = 7/142 (4%) Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 +I++++ ED++IDT RA+G+GGQH+NTTDSAVR+THIP+GI+V SE+SQ +NR + Sbjct: 2 DDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSERSQLKNRDQ 61 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTL 325 AMK+L+ +LY E++ E + R Q IG G +IR+Y F + DHR N Sbjct: 62 AMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYSMVKDHRTNYET 118 Query: 326 YKLEYVLQGYIDDIINPLLTAH 347 ++ V+ G +DD IN L + Sbjct: 119 GNIQAVMDGDLDDFINAYLRSR 140 >gi|325278151|ref|ZP_08143660.1| peptide chain release factor 2 [Pseudomonas sp. TJI-51] gi|324096726|gb|EGB95063.1| peptide chain release factor 2 [Pseudomonas sp. TJI-51] Length = 157 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 66/158 (41%), Positives = 94/158 (59%), Gaps = 7/158 (4%) Query: 193 ASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 + R HTS + V V PE + +++I D+RIDT R+SG+GGQHVNTTDSAVRITH+PT Sbjct: 1 SGARRHTSFSAVFVSPEIDDKVEIEINPSDLRIDTYRSSGAGGQHVNTTDSAVRITHVPT 60 Query: 252 GIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN--ERSANRKLQIGSGDRSERIRT 308 +V +E+SQH N+ AMK+LRA+LY++E ++ + + K IG G +IR+ Sbjct: 61 NTVVACQNERSQHANKDTAMKMLRAKLYELEMQKRNAASQALEDSKSDIGWG---HQIRS 117 Query: 309 YNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 Y RI D R + + VL G +D + L Sbjct: 118 YVLDDSRIKDLRTGVERSDCQKVLDGDLDQYLEASLKQ 155 >gi|218297203|ref|ZP_03497865.1| Class I peptide chain release factor [Thermus aquaticus Y51MC23] gi|218242480|gb|EED09019.1| Class I peptide chain release factor [Thermus aquaticus Y51MC23] Length = 176 Score = 127 bits (318), Expect = 3e-27, Method: Composition-based stats. Identities = 71/173 (41%), Positives = 100/173 (57%), Gaps = 4/173 (2%) Query: 187 RVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 R +ASGR HTS A V V+PE + +V I ED+RID R+ G GGQ VNTTDSAVR Sbjct: 2 RPSPFDASGRRHTSFAGVEVMPEVDDTVEVVIRPEDLRIDVFRSQGHGGQGVNTTDSAVR 61 Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 I H+PTGI V + +SQ +N+ A+KVLR+RL+++E K+ E R ++ + Sbjct: 62 IVHLPTGITVTCQTTRSQIKNKELALKVLRSRLFELEWKKKQEELQKLR-GEVRPIEWGS 120 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +IR+Y + + DHR L + + VL G + D I L +A +A E Sbjct: 121 QIRSYVLDKQYVKDHRTGLMRFDPQNVLDGDLMDFIWAGLEW-KAGRRQAAEE 172 >gi|298369317|ref|ZP_06980635.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str. F0314] gi|298283320|gb|EFI24807.1| peptide chain release factor 1 [Neisseria sp. oral taxon 014 str. F0314] Length = 106 Score = 127 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 51/105 (48%), Positives = 76/105 (72%) Query: 253 IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFS 312 ++ +SQH N+ +AMKVL ARL D +++ + +A RK IGSGDRSE IRTYN+ Sbjct: 2 VVECQDGRSQHANKAQAMKVLAARLNDAQKREAQAKEAAERKSLIGSGDRSECIRTYNYP 61 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 QGR+TDHRINLTL+KL++V+ G +++I N L+ HQA+++ + + Sbjct: 62 QGRVTDHRINLTLHKLDFVMDGDLEEITNALIAEHQAELLAAMGD 106 >gi|213162329|ref|ZP_03348039.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 194 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 82/193 (42%), Positives = 120/193 (62%), Gaps = 4/193 (2%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 C L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG Sbjct: 2 DCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRA 229 + ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RA Sbjct: 62 YAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRA 121 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG+GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E Sbjct: 122 SGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAE 181 Query: 289 RSANR--KLQIGS 299 + A K IG Sbjct: 182 KQAMEDTKSDIGW 194 >gi|116334943|ref|YP_802438.1| putative peptide chain release factor A [Candidatus Carsonella ruddii PV] gi|116235224|dbj|BAF35072.1| putative peptide chain release factor A [Candidatus Carsonella ruddii PV] Length = 229 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 142/233 (60%), Gaps = 7/233 (3%) Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISG 169 I+EIR G GG E+ F D+++MY ++ + E++S+S+ +KEI+ + Sbjct: 3 NYLIIEIRQGIGGEESINFAKDIYKMYVKFFEKQNINFEIISNSN-----FKEIILKVEN 57 Query: 170 RGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 ++ ESG+HRVQR+P +E GRVHTS TV V + ++ + ED++I+ ++ Sbjct: 58 NVFDKKLLNESGIHRVQRIPKSETQGRVHTSTCTVFVANINLDNNLKLKNEDLKIEICKS 117 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SGSGGQHVN T+SA++I H+PT I V S E+SQ+ N+ +A+ +L ++ ++ + Sbjct: 118 SGSGGQHVNKTNSAIKIIHLPTKIAVECSDERSQNLNKTKALIILNMKILKFQKNNYNTQ 177 Query: 289 RSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIIN 341 + RK I + +R+++IRTYNF+ +ITDH N ++L +L G + +I+ Sbjct: 178 LNNVRKKLISNSERAKKIRTYNFTNNKITDHINNKNYFQLNKILNGEFN-LID 229 >gi|169838094|ref|ZP_02871282.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [candidate division TM7 single-cell isolate TM7a] Length = 190 Score = 126 bits (316), Expect = 5e-27, Method: Composition-based stats. Identities = 95/173 (54%), Positives = 129/173 (74%), Gaps = 2/173 (1%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 M+ RYA +WK E++ ++ GG KE+ I G G +SR+KFESGVHRVQRVPATE+S Sbjct: 1 MFTRYAERNRWKTEIIEKNEIGVGGLKEVTFLIKGHGAYSRLKFESGVHRVQRVPATESS 60 Query: 195 GRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 GRVHTS TVAVLPE + +V+I D++IDT R+SG+GGQHVNTTDSAVRITH+PTG+ Sbjct: 61 GRVHTSTITVAVLPEIDDVSEVEINPSDLKIDTYRSSGAGGQHVNTTDSAVRITHLPTGL 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 +V + +SQ +N+ AMKVL ++LY++E ++ + R+ Q+GSGDRSE+ Sbjct: 121 VVTSQDGRSQIKNKEAAMKVLVSKLYEMECEKQRSAVENERRSQVGSGDRSEK 173 >gi|71393327|ref|XP_802218.1| peptide chain release factor 1 [Trypanosoma cruzi strain CL Brener] gi|70859733|gb|EAN80772.1| peptide chain release factor 1, putative [Trypanosoma cruzi] Length = 270 Score = 126 bits (316), Expect = 6e-27, Method: Composition-based stats. Identities = 61/193 (31%), Positives = 106/193 (54%), Gaps = 4/193 (2%) Query: 163 IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDI 222 + G V+ ++ E GVH+VQRVP T+ G++ TS A V ++P + V++ D Sbjct: 63 VKFKAIGDSVYRNLRHEIGVHKVQRVPLTDQDGKMQTSTAVVTLMPVLDPVSVNVHENDC 122 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 +I+ +R SG GGQ + ++ +AV +THIP+GI V +S N+ A++++ +L Sbjct: 123 KIEFVRGSGPGGQGMQSSSNAVCLTHIPSGISVKCHQSRSALGNKETALQLVAQQLLAQR 182 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG--YIDDI 339 K + + Q SG+RS+++RTYNF Q R+TDHR+ + L ++G + + Sbjct: 183 VKDQNSSFHEAWRNQWSSGERSDKMRTYNFPQNRVTDHRLG-KDFPLNTFMEGGNGLKGL 241 Query: 340 INPLLTAHQAKMI 352 + L + K + Sbjct: 242 HDDLNASEDRKQL 254 >gi|224086914|ref|XP_002308002.1| predicted protein [Populus trichocarpa] gi|222853978|gb|EEE91525.1| predicted protein [Populus trichocarpa] Length = 374 Score = 126 bits (315), Expect = 6e-27, Method: Composition-based stats. Identities = 67/350 (19%), Positives = 136/350 (38%), Gaps = 6/350 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 L+ + + R + E + E + K E ++ I K + ++ Sbjct: 29 MLAPTALEHEEARRIKQEEMIHECNLWEDPAKSNEILIKLAGSAKAIDALKDLKYKAEEA 88 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + ++ L + A + L+ LL D +C++ IRAG+ G Sbjct: 89 KLISQLVEMEAINYQLFKQAYTASLDVRKLLDQYEMSRLLKGPYDKQGACVV-IRAGSKG 147 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 ++ +L MY ++A +K ++ + GG + + + E G+ Sbjct: 148 LNHEIWKEELLNMYVKWAEKLGYKGRLVEKHTSMHGGIESATIEFEFECAYGYLSGERGI 207 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 H ++ + S + A V V+P D ++D + + + T+ Sbjct: 208 HH--KINSQNGSVHHEVTTACVDVVPLFLGTGFDFQIDDEELIVSCSPSLLRDRKSRTEL 265 Query: 243 AVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 V + HIPTGI V +S E+S N+++A L+A+L + ++ + S+ R+ I + Sbjct: 266 TVCLQHIPTGISVQSSGERSHFANKVKAHNRLKAKLLVIAEEQKVCDVSSIRRADIVD-E 324 Query: 302 RSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 + R Y + + D R + L L +L G I+ +I + + Sbjct: 325 WQKETRRYVSQPYKLVQDVRTGIELPDLNSILDGNINTLIGAHINIRHTE 374 >gi|213622420|ref|ZP_03375203.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 240 Score = 126 bits (315), Expect = 7e-27, Method: Composition-based stats. Identities = 83/238 (34%), Positives = 132/238 (55%), Gaps = 7/238 (2%) Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + L + + + + + A + E ++ + + D C L+I+ Sbjct: 1 DVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCYLDIQ 55 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG + ++ Sbjct: 56 AGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAYGWLR 115 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGSGGQH 236 E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+GGQH Sbjct: 116 TETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGAGGQH 175 Query: 237 VNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 VN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E ++ E+ A Sbjct: 176 VNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAME 233 >gi|20799561|gb|AAM28548.1|AF494518_1 peptide releasing factor 1 [Tomato big bud phytoplasma] Length = 269 Score = 125 bits (314), Expect = 8e-27, Method: Composition-based stats. Identities = 94/257 (36%), Positives = 145/257 (56%), Gaps = 5/257 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ +K ++ + + ++ E+P I L +E + I+ Y Q K+E + + + Sbjct: 3 DKLELIKKKYLQNQKKILENPKNFQNINLLKEMNKLQKIVFAYEEYIQLKKEYKTIQKTL 62 Query: 67 GDHNS---DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD--DDKSCILEIRAGTG 121 N + EI LA+ E + +I+ N++ LL P + D + I+EI+ G G Sbjct: 63 SQXNDKILEEEIIQLAEXEKNNLIIKIKXKTNQLEKLLYPDQYNAEDKQDVIVEIKKGIG 122 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DLFR Y++Y +KWK+E+++ G + I+G+ VF +K+ESG Sbjct: 123 GQEANLFVSDLFRAYKKYIEYKKWKLEIINLLSTSKEGISSVEFVINGKNVFYYLKYESG 182 Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 +HRVQR+P TE GR+HTS + V+P ++I DIR+DT ASG GGQ VNTT Sbjct: 183 IHRVQRIPKTENKGRIHTSTVKILVIPNNNHQKIEINWNDIRVDTFNASGPGGQSVNTTK 242 Query: 242 SAVRITHIPTGIMVTSS 258 SAVR+TH+PTGI + Sbjct: 243 SAVRLTHLPTGISSSCQ 259 >gi|153845428|ref|ZP_01993769.1| peptide chain release factor 2 [Vibrio parahaemolyticus AQ3810] gi|149745113|gb|EDM56364.1| peptide chain release factor 2 [Vibrio parahaemolyticus AQ3810] Length = 148 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 61/141 (43%), Positives = 85/141 (60%), Gaps = 6/141 (4%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 I +DI D+RID RASG+GGQHVNTT+SAVRITH+PT +V +++SQH+N+ Sbjct: 8 EIDENIAIDINPADLRIDVYRASGAGGQHVNTTESAVRITHVPTNTVVQCQNDRSQHKNK 67 Query: 267 LRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLT 324 +AMK LRA+L+++E ++ E+ AN K IG G +IR+Y RI D R + Sbjct: 68 DQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG---SQIRSYVLDDSRIKDLRTGVE 124 Query: 325 LYKLEYVLQGYIDDIINPLLT 345 + VL G +D I L Sbjct: 125 NRNTQAVLDGDLDKFIEASLK 145 >gi|156081736|ref|XP_001608361.1| peptide release factor [Plasmodium vivax SaI-1] gi|148800932|gb|EDL42337.1| peptide release factor, putative [Plasmodium vivax] Length = 446 Score = 125 bits (314), Expect = 9e-27, Method: Composition-based stats. Identities = 85/276 (30%), Positives = 142/276 (51%), Gaps = 9/276 (3%) Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 D ++D ++R L + ++++ + ++ + D LEI G GG EA Sbjct: 142 ADTHNDDDVRQLLRAVEDVGSLLLQDVVDFYKSVVNAEHHLDTDEVKLEITPGVGGLEAK 201 Query: 127 LFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 LF DL MYE + L+ ++ ++ SD+ G++ IVA + G V+ E+G+HRV Sbjct: 202 LFCSDLLSMYEHFCKLKDFQCTLIRGESDDAKDGHRNIVAVVKGERVYEHFVQENGIHRV 261 Query: 186 QRVPATEASGRVHTSAATVAVLPEAA-----EIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 QRVP S ++ TS + V V E + + +++ D+ I+T R+ G GGQ VN Sbjct: 262 QRVPV--NSKKIQTSTSVVFVYDEESLRKKIKKKMNLKKSDLIIETKRSGGPGGQSVNKN 319 Query: 241 DSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++ V++ H PT I V SQ QNR A++ L+ +L+ ++ + R+ S Sbjct: 320 ETCVKVLHKPTNISVEVQKTSSQMQNRNMAIEALKTKLFSFYYQQEKDLFFKCRRSHKMS 379 Query: 300 GDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY 335 GDRSE+IR+YNF +TDH N+ ++ +G Sbjct: 380 GDRSEKIRSYNFINDFVTDHLSNVQYPGIDLFFRGD 415 >gi|221054928|ref|XP_002258603.1| peptide release factor [Plasmodium knowlesi strain H] gi|193808672|emb|CAQ39375.1| peptide release factor, putative [Plasmodium knowlesi strain H] Length = 407 Score = 125 bits (314), Expect = 1e-26, Method: Composition-based stats. Identities = 90/329 (27%), Positives = 153/329 (46%), Gaps = 31/329 (9%) Query: 36 TEEYAAISPIISKISIYDQKKQEEQDLHTVIGD----------------------HNSDS 73 Y I+ I + I + + + ++D Sbjct: 50 GRTYQKITKIQERSKILKTLHDDLDVYTELFQESGFIDGGLNPDKTIQEVKSSSLMDTDD 109 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 +I++L + ++E+ + ++ + D + +EI G GG EA LF DLF Sbjct: 110 DIKELLRTIEDVGSLLLQEVVDFYKSVVNTEHHLDTEEVKVEITPGVGGLEAKLFCNDLF 169 Query: 134 RMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 MYE++ + ++ ++ S++ GY+ IVA I G V+ E+G+HRVQR+P Sbjct: 170 SMYEQFCKEKNFQCNLIKGESEDTKDGYRSIVAIIKGERVYEHFVQENGIHRVQRIPV-- 227 Query: 193 ASGRVHTSAATVAV-----LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 S ++ TS + V V L + + ++ D+ I+T R+ G+GGQ VN ++ V+I Sbjct: 228 NSKKIQTSTSVVFVSDEESLKKKIQKKMNFGKNDLLIETKRSGGAGGQSVNKNETCVKIL 287 Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H PT + V SQ QNR A++ L+ +L+ ++ + +K SGDRSE+I Sbjct: 288 HKPTNLSVEVQKTSSQIQNRSMAIQALKNKLFSFYYQQEKDLYFKYKKSHKMSGDRSEKI 347 Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGY 335 RTYNF ITDH N+ ++ +G Sbjct: 348 RTYNFVGNFITDHLRNVQYPGIDLFFRGD 376 >gi|315254830|gb|EFU34798.1| PCRF domain protein [Escherichia coli MS 85-1] Length = 210 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 88/198 (44%), Positives = 135/198 (68%), Gaps = 7/198 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSAA 202 VQRVPATE+ GR+HTSA Sbjct: 184 VQRVPATESQGRIHTSAC 201 >gi|84996385|ref|XP_952914.1| peptide chain release factor [Theileria annulata strain Ankara] gi|65303911|emb|CAI76290.1| peptide chain release factor, putative [Theileria annulata] Length = 364 Score = 125 bits (313), Expect = 1e-26, Method: Composition-based stats. Identities = 71/286 (24%), Positives = 125/286 (43%), Gaps = 45/286 (15%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALR-----------KWKVEVL 150 P D SC L I++G GGSE+ + L MY+++ + +++ + Sbjct: 77 DPLRKYDRNSCKLIIKSGVGGSESFDWCRILTEMYKKFISHYEPPDSDDNFPSSLRLKEV 136 Query: 151 SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA 210 GG++ + + G + +K E+G HR+ R + + TS +V V+P Sbjct: 137 DVCPGSTGGFRRVEFDVIGDYAYRLLKGENGTHRLIRNSPFNSENKRQTSFGSVQVVPIL 196 Query: 211 AEIDVDIPL---------EDIRIDTMRASGSGGQHVNTTDSA------------------ 243 ++ D ++ +D+ I++MR+SG GGQ+VN ++A Sbjct: 197 SDTDEEVVNFKKNRQLLKKDLIIESMRSSGKGGQNVNKVETAGNLLFLKSIFTKSTIDIF 256 Query: 244 --VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ-IGS 299 VR+ H PTG+ V E++ QNR A+++L + K++ + + + +G+ Sbjct: 257 VLVRVYHKPTGLSVKVQQERTNTQNREIAIRMLTKLVDQHYLKKLNEKVNEIKGEDLVGT 316 Query: 300 GDRSERIRTYNF-SQGRITDHRINLTLYKLEYVLQGYIDDIINPLL 344 IRTY + R+ DHR N K VL G + I L Sbjct: 317 --WGSHIRTYTLNPEQRVKDHRTNFETSKATNVLNGDLLPFILTYL 360 >gi|213421201|ref|ZP_03354267.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 148 Score = 124 bits (311), Expect = 2e-26, Method: Composition-based stats. Identities = 58/132 (43%), Positives = 81/132 (61%), Gaps = 6/132 (4%) Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRAR 276 D+RID RASG+GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+ Sbjct: 18 NPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAK 77 Query: 277 LYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 LY++E ++ E+ A K IG G +IR+Y RI D R + + VL G Sbjct: 78 LYELEMQKKNAEKQAMEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDG 134 Query: 335 YIDDIINPLLTA 346 +D I L A Sbjct: 135 SLDQFIEASLKA 146 >gi|300176358|emb|CBK23669.2| unnamed protein product [Blastocystis hominis] Length = 244 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 68/215 (31%), Positives = 116/215 (53%), Gaps = 7/215 (3%) Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 L MY +A WK +++S D+ D + + G + S + ESGVHR+ R+ Sbjct: 1 MLLAMYTSFAQKMNWKCKLISKLDDGD-SCHSSILKLEGDDLASYLSLESGVHRLVRISP 59 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVD-IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 + + R HTS A+V+V P I +++ID R+SG GGQHVN T+SAVR+TH+ Sbjct: 60 FDKNQRRHTSFASVSVSPVPEAASSLRILPTELQIDRFRSSGPGGQHVNKTESAVRVTHL 119 Query: 250 PTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR-KLQIGSGDRSERIR 307 P+GI+ +E++QHQN AM++++++L E ++ A ++ + + + S +IR Sbjct: 120 PSGIVAECQAERNQHQNLEIAMEMVKSKLLLREAEKEAEKKQEDHARKDV--NAWSSQIR 177 Query: 308 TYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIIN 341 +Y + DHR + +E +L G + + Sbjct: 178 SYVLHPYKMVKDHRFGVEEGDVEKILGGDLKGFVE 212 >gi|124507187|ref|XP_001352190.1| peptide release factor, putative [Plasmodium falciparum 3D7] gi|23505221|emb|CAD52001.1| peptide release factor, putative [Plasmodium falciparum 3D7] Length = 404 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 93/320 (29%), Positives = 145/320 (45%), Gaps = 9/320 (2%) Query: 22 RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD-HNSDSEIRDLAQ 80 ++SE + IKL + + + ++ IY Q +E D + + +I L Sbjct: 38 KISEHKAYSDIIKLQKHSHMLHTLNEELDIYKQLLKEIIDSKESYEERLKKNEDINQLNC 97 Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 I ++ + D +EI AG GG EA +F +LF MYE + Sbjct: 98 HIESVTNLIIDDIILFYKSYVNQDHHLDATEIKMEITAGVGGFEAKMFSKELFHMYENFC 157 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 +R + E+ +++ K IV I G ++ E+G+HRVQRVP S +V TS Sbjct: 158 RVRNYDYEMKEVINDEAKENKNIVLYIRGNNIYEDFYQENGIHRVQRVPI--NSNKVQTS 215 Query: 201 AATVAVLPEAAEIDVDIPLEDIR-----IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 + V + E + D + + I T R+ G+GGQ VN ++ V+I H PT I V Sbjct: 216 TSIVFICDEKKQKDNIMKKINFSKQDLLIQTKRSGGAGGQSVNKNETCVKILHKPTNIFV 275 Query: 256 T-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 SQ N+ AM++L+ +LY+ + N +K Q S DRS +IRTYNF Sbjct: 276 EVQKTSSQIHNKNLAMQLLKDKLYNFYYELEKNNFLKEKKNQKQSADRSHKIRTYNFLHD 335 Query: 315 RITDHRINLTLYKLEYVLQG 334 I DH N ++ +G Sbjct: 336 VIIDHITNTQYSGIQNFFKG 355 >gi|242087755|ref|XP_002439710.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor] gi|241944995|gb|EES18140.1| hypothetical protein SORBIDRAFT_09g018740 [Sorghum bicolor] Length = 409 Score = 123 bits (309), Expect = 4e-26, Method: Composition-based stats. Identities = 76/337 (22%), Positives = 143/337 (42%), Gaps = 6/337 (1%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 R + E + + D K E +A++ I + + + ++ + D+ Sbjct: 76 QRIKQ-EEVLRKRNLWDNPAKSHETLSALADAIRVVDHLKDLRFKAEEAKLISQLSEMDA 134 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 +L + + L+ Y LL D + +CI+ + A + G + L+ +F Sbjct: 135 INGELFKQAYKSSVDASEYLDRYQMYKLLKGPYDKEGACII-VTAVSNGVTSELWAEKVF 193 Query: 134 RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 MY +A + +KV ++ + G + I +F + E G+H++ + E Sbjct: 194 GMYTSWARKQGYKVGLIEKIFSTSGHIQSAAMEIESEYMFGTLSGEKGMHQMIY-SSLEN 252 Query: 194 SGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 S +A V ++P + VD+ L+D I+T + + +AVR+ H+P+G+ Sbjct: 253 SDIDQALSARVDIIPLFLDRPVDLHLDDGDIETSPSPSVHKKRGRRNGAAVRVQHVPSGV 312 Query: 254 MVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF- 311 SS E+S N+L+A L+A+L V R+ ++ + I SE R Y F Sbjct: 313 TAESSGERSYFANKLKATSRLKAKLLLVARELRVSDVKLINRQAIEDKCNSE-TRRYTFG 371 Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQ 348 + D + L L VL+G I+ I +T+ Q Sbjct: 372 PHKLVHDLNTGIQLSDLNSVLEGDIEPFIRGRVTSRQ 408 >gi|329942484|ref|ZP_08291294.1| peptide chain release factor 2 [Chlamydophila psittaci Cal10] gi|328815394|gb|EGF85382.1| peptide chain release factor 2 [Chlamydophila psittaci Cal10] Length = 272 Score = 123 bits (308), Expect = 5e-26, Method: Composition-based stats. Identities = 94/230 (40%), Positives = 130/230 (56%), Gaps = 2/230 (0%) Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 ++ D + ++ + +E L D C L I AG GG+E+ + Sbjct: 9 NDGDVSADPELREDLEKEFAICENILSEWETQRLLSGEVDKNPCFLTINAGAGGTESCDW 68 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 V LFRMY R+AA +WKVEV+ + D G K + SG + K E GVHR+ R+ Sbjct: 69 VEMLFRMYCRWAAQHQWKVEVIDRQEGDVAGIKHVTVKFSGDYAYGYAKAERGVHRLVRI 128 Query: 189 PATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 +++ + HTS A+V V P EI++DI D+RIDT R+SG+GGQHVN TDSAVRIT Sbjct: 129 SPFDSNAKRHTSFASVDVYPEIDDEIEIDIRPNDLRIDTFRSSGAGGQHVNVTDSAVRIT 188 Query: 248 HIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 HIPTGIMV E+SQ QNR MK+LRAR+Y + ++ +RK + Sbjct: 189 HIPTGIMVSCQRERSQIQNRESCMKMLRARMYQQILQERLEKQLIDRKNK 238 >gi|325119759|emb|CBZ55312.1| hypothetical protein NCLIV_057350 [Neospora caninum Liverpool] Length = 427 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 77/194 (39%), Positives = 112/194 (57%), Gaps = 5/194 (2%) Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE--IDVDIPLEDIRI 224 S F + E+G+HRVQRVP TEA GR+ TSA V VLP ++ +D+ ++I Sbjct: 214 FSRPDAFRFLSLEAGIHRVQRVPPTEARGRMQTSATAVTVLPRSSNLEDKIDLSPPTLKI 273 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 D MRASG GGQ VN +++AVRITH PTG+ V +SQ +N+ A+++LRA+L + Sbjct: 274 DFMRASGPGGQSVNKSETAVRITHKPTGVSVHCMRTQSQTENKNLALELLRAQLLQQMMR 333 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ--GYIDDIIN 341 + + ER Q GS DRSE+IRTYNF + +TDHR + + +E L + I++ Sbjct: 334 KASEERGRAIDAQKGSKDRSEKIRTYNFQRDVVTDHRCRMHVNGVEDFLDTSDGLGAILD 393 Query: 342 PLLTAHQAKMIGSA 355 L + + Sbjct: 394 VLRRQREDAQLSVL 407 >gi|332825293|ref|XP_003311599.1| PREDICTED: mitochondrial translational release factor 1-like [Pan troglodytes] Length = 281 Score = 122 bits (305), Expect = 1e-25, Method: Composition-based stats. Identities = 101/209 (48%), Positives = 143/209 (68%), Gaps = 2/209 (0%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIRLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PTG Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTG 269 >gi|332213667|ref|XP_003255946.1| PREDICTED: peptide chain release factor 1-like, mitochondrial isoform 2 [Nomascus leucogenys] Length = 271 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 99/209 (47%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 269 >gi|323964709|gb|EGB60180.1| peptide chain release [Escherichia coli M863] Length = 200 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 89/197 (45%), Positives = 135/197 (68%), Gaps = 7/197 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + E+ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGEAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQDELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 AALF GDLFRMY RYA R+W+VE++S+S+ + GGYKEI+A ISG GV+ R+KFESG HR Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSASEGEHGGYKEIIAKISGDGVYGRLKFESGGHR 183 Query: 185 VQRVPATEASGRVHTSA 201 VQRVPATE+ GR+HTSA Sbjct: 184 VQRVPATESQGRIHTSA 200 >gi|119568099|gb|EAW47714.1| mitochondrial translational release factor 1-like, isoform CRA_c [Homo sapiens] Length = 271 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 100/209 (47%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 269 >gi|301344980|ref|ZP_07225721.1| peptide chain release factor 1 [Acinetobacter baumannii AB056] gi|301513510|ref|ZP_07238747.1| peptide chain release factor 1 [Acinetobacter baumannii AB058] gi|301597421|ref|ZP_07242429.1| peptide chain release factor 1 [Acinetobacter baumannii AB059] Length = 127 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 61/123 (49%), Positives = 88/123 (71%), Gaps = 1/123 (0%) Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 H+N TDSAVRITHIPTG +V E+SQH+N+ +AM +L +RL + +R S R+ Sbjct: 1 HINKTDSAVRITHIPTGTVVECQEERSQHKNKAKAMALLVSRLENAKRAAADAATSEMRR 60 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 +GSGDRSERIRTYN+ QGR+TDHRINLTLYKL+ +++G + ++++ L +QA + Sbjct: 61 DLVGSGDRSERIRTYNYPQGRMTDHRINLTLYKLDAIMEGDLTELLDSLHREYQADQLAM 120 Query: 355 ASE 357 ++ Sbjct: 121 LAQ 123 >gi|114609871|ref|XP_001140771.1| PREDICTED: mitochondrial translational release factor 1-like isoform 5 [Pan troglodytes] Length = 271 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 100/209 (47%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIRLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 269 >gi|296775661|gb|ADH42938.1| protein chain release factor A [uncultured SAR11 cluster alpha proteobacterium H17925_23J24] Length = 214 Score = 121 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 74/195 (37%), Positives = 120/195 (61%), Gaps = 1/195 (0%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++ + R+ +E +S K ++EY+ + I+ Y ++ ++D Sbjct: 1 MIPIDKVKKVIERYISLEKELSTGKVEPKLLAKKSKEYSDLKNILPSAKEYVDFEKNKKD 60 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 L+ +I D +D E+ LA+ E+ + + E ++ LLPKD DD+K+ I+EIRAGTG Sbjct: 61 LNNIIEDKKNDKEMISLAEKELKDAIENKEKNEKKLKIFLLPKDKDDEKNTIVEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESG 181 G EA LFV DLFRMYE+ + + WK+E++S S ++ G+KE++ ++ G ++S +K+ESG Sbjct: 121 GLEATLFVADLFRMYEKVCSKKGWKIEIISISKSEAKGFKEVIFSVIGENIYSYLKYESG 180 Query: 182 VHRVQRVPATEASGR 196 VHRVQRVP TEA GR Sbjct: 181 VHRVQRVPTTEAQGR 195 >gi|166795305|ref|NP_001107656.1| peptide chain release factor 1-like, mitochondrial isoform b [Homo sapiens] gi|15680165|gb|AAH14428.1| MTRF1L protein [Homo sapiens] gi|56203459|emb|CAI18898.1| mitochondrial translational release factor 1-like [Homo sapiens] gi|193787809|dbj|BAG53012.1| unnamed protein product [Homo sapiens] Length = 271 Score = 120 bits (301), Expect = 3e-25, Method: Composition-based stats. Identities = 99/209 (47%), Positives = 142/209 (67%), Gaps = 2/209 (0%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K++E ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKERELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG GG EA LF ++F MY++YAA ++W E L ++ GG + Sbjct: 121 SEETDENDLILEVTAGVGGQEAMLFTSEIFDMYQQYAAFKRWHFETLEYFPSELGGLRHA 180 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 181 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 240 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 241 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 269 >gi|149003372|ref|ZP_01828261.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS69] gi|147758555|gb|EDK65553.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS69] Length = 145 Score = 120 bits (300), Expect = 4e-25, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 92/142 (64%), Gaps = 7/142 (4%) Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQNRLR 268 I+V+I +DI++DT R+ G+GGQ+VN + VR+THIPTGI+V S+ +++Q+ NR R Sbjct: 5 DDTIEVEIREDDIKMDTFRSGGAGGQNVNKVSTGVRLTHIPTGIVVQSTVDRTQYGNRDR 64 Query: 269 AMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQG-RITDHRINLTL 325 AMK+L+A+LY +E+++ A E + + K +I G +IR+Y F+ + DHR + + Sbjct: 65 AMKMLQAKLYQMEQEKKAAEVDSLKGEKKEITWG---SQIRSYVFTPYTMVKDHRTSFEV 121 Query: 326 YKLEYVLQGYIDDIINPLLTAH 347 +++ V+ G +D I+ L Sbjct: 122 AQVDKVMDGDLDGFIDAYLKWR 143 >gi|221133260|ref|XP_002171178.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 205 Score = 119 bits (299), Expect = 6e-25, Method: Composition-based stats. Identities = 100/203 (49%), Positives = 144/203 (70%), Gaps = 1/203 (0%) Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + + E+++ Q E+ A + I +LE + ++PKD DD + I+EIRAGT Sbjct: 1 EIIELAALGIDNKEMKEFVQEEISACQVCIADLELRLLDSIIPKDKDDSNNAIMEIRAGT 60 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GG EAA+F ++ MY++Y++ +WK EVL S++ DGG KE+ I G GVF ++K E Sbjct: 61 GGREAAIFAAEMLSMYDKYSSSNQWKFEVLDESESTDGGLKEVSVNIIGSGVFGKLKHEI 120 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVP TE+ GRVHTS TVAVLP+ IDV + ++D+++DT R+SG+GGQHVNTT Sbjct: 121 GVHRVQRVPITESLGRVHTSTVTVAVLPQPESIDVVLNMKDVKVDTFRSSGAGGQHVNTT 180 Query: 241 DSAVRITHIPTGIMVT-SSEKSQ 262 DSAVR+THIP+G++V S++SQ Sbjct: 181 DSAVRLTHIPSGLVVAVQSQRSQ 203 >gi|154270254|ref|XP_001535983.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150410054|gb|EDN05442.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 223 Score = 119 bits (298), Expect = 6e-25, Method: Composition-based stats. Identities = 81/214 (37%), Positives = 116/214 (54%), Gaps = 30/214 (14%) Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA---------------EIDVDIP 218 R + E+GVHRVQRVP TE GR HTSA +V +LP D I Sbjct: 2 RRFETEAGVHRVQRVPTTENKGRTHTSAVSVVILPSYPSIIGEGDSELNFDDPNSDYYID 61 Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 +++ ++ MRA G+GGQHVN T+SA+R+THIPTGI+V +SQH+NR +A +LRAR+ Sbjct: 62 PQEVNVEKMRAGGAGGQHVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWHLLRARI 121 Query: 278 YDVERKRMANERSANRKLQIG---SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 R+ E R+ +G R ++IRTYNF Q R TDHR LTL+ L +++G Sbjct: 122 AQQRREAREEEMVKLRRGVMGGVAKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLGSIMEG 181 Query: 335 --YIDDIINPLLTA---------HQAKMIGSASE 357 ++ I++ + + + A E Sbjct: 182 GDGLEKIMDSVRGWLVDREVDDVFAEEQMKMAQE 215 >gi|315926256|ref|ZP_07922444.1| peptide chain release factor RF2 [Pseudoramibacter alactolyticus ATCC 23263] gi|315620443|gb|EFV00436.1| peptide chain release factor RF2 [Pseudoramibacter alactolyticus ATCC 23263] Length = 173 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 61/154 (39%), Positives = 88/154 (57%), Gaps = 6/154 (3%) Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 G HR+ R+ + GR TS A V VLP VDIP D+R+D ASG GGQ VNT Sbjct: 1 GTHRLVRISPFDNQGRRQTSFAGVEVLPVVEETDHVDIPGSDLRVDVFHASGPGGQGVNT 60 Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 TDSAVR+TH+PTGI+V +E+SQ QN+ A++VL+A+L + R+ E ++ + Sbjct: 61 TDSAVRLTHLPTGIVVSCQNERSQIQNKAAALRVLQAKLLEKAREEQEAEMNSLKSEGNS 120 Query: 299 SGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYV 331 G ++R+Y + + D R N + + V Sbjct: 121 WGA---QMRSYVLHPYQMVKDLRTNHEVGNTDAV 151 >gi|207109382|ref|ZP_03243544.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_CA4C1] Length = 196 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 108/199 (54%), Positives = 146/199 (73%), Gaps = 4/199 (2%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 + ++ ++ D E+ +LA+ E+ +E + +LE I LL+PKD +DDK+ Sbjct: 2 SVLENIKENKELLE----DKELSELAKEELKILEIQKSDLETAIKQLLIPKDPNDDKNIY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 LE+RAGTGG EA +FVGDLF+ Y RYA L+KWKVE++SSS+N GGYKEI+A I G+GV+ Sbjct: 58 LELRAGTGGDEAGIFVGDLFKAYCRYADLKKWKVEIVSSSENSVGGYKEIIALIKGKGVY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSG 233 SR+KFE+G HRVQRVP TE+ GR+HTSA TVA++PE +++V I D++I+ RA G G Sbjct: 118 SRLKFEAGTHRVQRVPETESQGRIHTSAITVAIMPEVDDVEVSINPSDLKIEVFRAGGHG 177 Query: 234 GQHVNTTDSAVRITHIPTG 252 GQ VNTTDSAVRITH+PT Sbjct: 178 GQCVNTTDSAVRITHLPTN 196 >gi|225714246|gb|ACO12969.1| Peptide chain release factor 1 [Lepeophtheirus salmonis] Length = 352 Score = 116 bits (290), Expect = 5e-24, Method: Composition-based stats. Identities = 74/316 (23%), Positives = 135/316 (42%), Gaps = 29/316 (9%) Query: 47 SKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 S I QE + L ++ + +++ + + + N +L+ Sbjct: 50 SDIYALQTGLQEIEALKSMAQEEKDFE--KEVLEDLSKLEPQVDELVTRLANNILISNQR 107 Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 D + +LE+ G GG EA++F ++F +Y Y + G + Sbjct: 108 YDQDNAVLEVLPGAGGLEASVFAAEVFNLYCSYCRDYLGYNVEVQEHVETTGASDYFAIS 167 Query: 167 ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRID 225 + + S R+ TS +++VLP +D+ D+ + Sbjct: 168 KASILIKG-----------------SKSDRLQTSTRSLSVLPLLTDFSRIDVNPSDLSVT 210 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 R+SG GGQ VNTT+SAVR+ H PT I ++ H+N A++ L+ LY V ++ Sbjct: 211 YCRSSGPGGQGVNTTNSAVRMIHNPTKISAHCQELRTAHENYGLALEKLKRELYRVMFEK 270 Query: 285 MANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRIN---LTLYKLEYVLQGY-----I 336 ++ S+ RK QIG +R+E+IRTY++ + + DHRI + L ++G + Sbjct: 271 ENSKVSSTRKSQIGQMNRNEKIRTYHYGRNTVLDHRIQGVVKQVPNLFDFMKGEYGFTIL 330 Query: 337 DDIINPLLTAHQAKMI 352 D + L + + + Sbjct: 331 DQFYSFLKDMDEEEQL 346 >gi|226329846|ref|ZP_03805364.1| hypothetical protein PROPEN_03758 [Proteus penneri ATCC 35198] gi|225200641|gb|EEG82995.1| hypothetical protein PROPEN_03758 [Proteus penneri ATCC 35198] Length = 90 Score = 116 bits (289), Expect = 7e-24, Method: Composition-based stats. Identities = 43/88 (48%), Positives = 63/88 (71%) Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 M VL AR+ E ++ ++ R+ +GSGDRS+RIRTYNF QGR+TDHRINLT Y+L+ Sbjct: 1 MSVLGARIRAAEMQKRQEAEASERRNLLGSGDRSDRIRTYNFPQGRVTDHRINLTFYRLD 60 Query: 330 YVLQGYIDDIINPLLTAHQAKMIGSASE 357 V++G +D +I P++T +QA + + SE Sbjct: 61 EVMEGKLDPLIQPIVTEYQADQLSALSE 88 >gi|213580224|ref|ZP_03362050.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 209 Score = 116 bits (289), Expect = 8e-24, Method: Composition-based stats. Identities = 74/212 (34%), Positives = 112/212 (52%), Gaps = 7/212 (3%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQH 263 GGQHVN T+SAVRITHIPTGI+ +++SQH Sbjct: 178 GGQHVNRTESAVRITHIPTGIVTQCQNDRSQH 209 >gi|407639|gb|AAD12326.1| unknown [Mycoplasma genitalium] Length = 113 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 56/113 (49%), Positives = 81/113 (71%), Gaps = 1/113 (0%) Query: 240 TDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 T+SAVRITH+PTGI+V KSQ NR +AMK+LRA+L++ + + + ++ RK Q+G Sbjct: 1 TESAVRITHLPTGIVVACQEGKSQFSNRDKAMKMLRAKLWENAQNKQLSTQADLRKSQVG 60 Query: 299 SGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKM 351 SG+R+E+IRTYN+ Q RITDHRI LT+ KL V+ G +D+II L + ++ Sbjct: 61 SGERAEKIRTYNYPQNRITDHRIKLTINKLNTVILGDLDEIIEALQADERTQL 113 >gi|302781616|ref|XP_002972582.1| hypothetical protein SELMODRAFT_97037 [Selaginella moellendorffii] gi|300160049|gb|EFJ26668.1| hypothetical protein SELMODRAFT_97037 [Selaginella moellendorffii] Length = 163 Score = 115 bits (287), Expect = 1e-23, Method: Composition-based stats. Identities = 77/140 (55%), Positives = 104/140 (74%), Gaps = 7/140 (5%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R+HTS A+VA+LPE E+DVDI ++I+IDT RA G+ GQHVNTT SAVR+TH+PTGI+V Sbjct: 1 RIHTSTASVAILPEVNEVDVDIRNDEIKIDTYRAGGADGQHVNTTCSAVRVTHVPTGIVV 60 Query: 256 T-SSEKSQH------QNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 E+S+H +N+ +A+ +L ARLY++ER R A RS ++ QIGS DRSE IRT Sbjct: 61 AIQDERSRHKEGPSARNKAKALSILYARLYELERSRAAASRSELQQDQIGSSDRSESIRT 120 Query: 309 YNFSQGRITDHRINLTLYKL 328 YNF Q R+TDHR+ +T + + Sbjct: 121 YNFPQDRVTDHRVGVTQHSI 140 >gi|323333643|gb|EGA75036.1| Mrf1p [Saccharomyces cerevisiae AWRI796] Length = 311 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 95/256 (37%), Positives = 136/256 (53%), Gaps = 14/256 (5%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 L KQ + +++ +S D + + YA +S + Y +K E + L Sbjct: 52 LLVKQAEKYEAELKDLDKDLSCGIHFD--VNKQKHYAKLSALTDTFIEYKEKLNELKSLQ 109 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 +I SD +R A+ E + + + + LLP DK +LE+R G GG Sbjct: 110 EMIV---SDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKPSLLELRPGVGGI 166 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGV 182 EA +F +L MY YA RKWK ++S ++N+ G G + + +I G + R++FE+GV Sbjct: 167 EAMIFTQNLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEAGSYDRLRFEAGV 226 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPE--------AAEIDVDIPLEDIRIDTMRASGSGG 234 HRVQR+P+TE GR HTS A V VLP+ + +IR+D MRASG GG Sbjct: 227 HRVQRIPSTETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGG 286 Query: 235 QHVNTTDSAVRITHIP 250 QHVNTTDSAVR+THIP Sbjct: 287 QHVNTTDSAVRLTHIP 302 >gi|255637443|gb|ACU19049.1| unknown [Glycine max] Length = 155 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 49/142 (34%), Positives = 77/142 (54%), Gaps = 3/142 (2%) Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 L ++V+IP ED+ I RA G GGQ+VN ++AVRITHIPTG+ V + E+SQ N Sbjct: 3 LLPDESMNVEIPEEDLEISFSRAGGKGGQNVNKVETAVRITHIPTGVTVRCTEERSQLAN 62 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLT 324 ++RA+ L+A+L + ++ A+E R + + ++IR Y F + + D R Sbjct: 63 KIRALSRLKAKLLVIAEEQRASEIKQIRGDAVK-AEWGQQIRNYVFHPYKLVKDVRTGHE 121 Query: 325 LYKLEYVLQGYIDDIINPLLTA 346 + V+ G +D I L Sbjct: 122 TTDITSVMDGELDPFIKSYLKH 143 >gi|323452428|gb|EGB08302.1| hypothetical protein AURANDRAFT_13671 [Aureococcus anophagefferens] Length = 235 Score = 113 bits (282), Expect = 5e-23, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 110/233 (47%), Gaps = 11/233 (4%) Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 D C LEI AG GG +A + + RMY R+ R + V S+ D Sbjct: 1 ELEAAMTGPYDGCDCRLEITAGAGGLDAQEWTAMVARMYARFGEKRGFSVVEAERSEGDH 60 Query: 158 GGYKE-IVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 G + + I G F + E G HR+ R ++ + TS A+V P+ + D Sbjct: 61 PGCVKGVSLEIRGANAFGLFRGEKGAHRLVRQSPFNSAAKRQTSFASVEPTPDLPDDHPD 120 Query: 217 IP-------LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 +P D+ + T RA G+GGQ+VN ++AVR+TH+PTG+ V + E++Q N+ Sbjct: 121 LPADVAELDPADLEVTTARAGGAGGQNVNKVETAVRVTHVPTGLRVRCARERTQGANKAI 180 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHR 320 A+ +LRA+L ++ A + R ++ D +R+Y + + D R Sbjct: 181 ALTMLRAKLVAAMAEQRAATLADIRGDRVA-ADFGASVRSYVLHPYKLVKDDR 232 >gi|145629735|ref|ZP_01785531.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21] gi|144978072|gb|EDJ87851.1| peptide chain release factor 1 [Haemophilus influenzae 22.1-21] Length = 102 Score = 112 bits (281), Expect = 7e-23, Method: Composition-based stats. Identities = 46/97 (47%), Positives = 72/97 (74%) Query: 261 SQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 +N+ +AM VL +R+ E++R A E++ R+ +GSGDRS++IRTYN+ QGR+TDHR Sbjct: 4 HSTKNKAKAMSVLASRIVQAEQERQAAEQTDMRRNLLGSGDRSDKIRTYNYPQGRVTDHR 63 Query: 321 INLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 INLT+Y+L+ V+ G ID++I P++T +QA + + SE Sbjct: 64 INLTIYRLDEVINGKIDELIQPIITEYQADQLAALSE 100 >gi|325067255|ref|ZP_08125928.1| peptide chain release factor 1 [Actinomyces oris K20] Length = 397 Score = 112 bits (280), Expect = 8e-23, Method: Composition-based stats. Identities = 102/219 (46%), Positives = 136/219 (62%), Gaps = 16/219 (7%) Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 + + EV A+E + +L+P+D DD + I+E++AG G Sbjct: 173 ARELAAEDED-------FAAEVPALEAAEAAACEHLREVLVPRDPDDSRDVIIEVKAGEG 225 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI-------SGRGVFS 174 G E+ALF DL RMY RYA + W VEVL ++D+D GGYK++ I GV++ Sbjct: 226 GEESALFASDLARMYSRYAERQGWAVEVLDATDSDLGGYKDVRLAIKARGPVEPQDGVWA 285 Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV-DIPLEDIRIDTMRASGSG 233 +K+E GVHRVQRVP TE+ GR+HTSAA V V+PEA + I D+RID R+SG G Sbjct: 286 HLKYEGGVHRVQRVPVTESQGRIHTSAAGVLVMPEADDPGELQIDAADLRIDVFRSSGPG 345 Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMK 271 GQ VNTTDSAVRITH+PTGI+V+ +EKSQ QN+ AM+ Sbjct: 346 GQSVNTTDSAVRITHLPTGIVVSMQNEKSQLQNKEAAMR 384 >gi|82538743|ref|XP_723804.1| peptide chain release factor 1 [Plasmodium yoelii yoelii str. 17XNL] gi|23478225|gb|EAA15369.1| peptide chain release factor 1 [Plasmodium yoelii yoelii] Length = 358 Score = 112 bits (280), Expect = 9e-23, Method: Composition-based stats. Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 13/309 (4%) Query: 34 KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 K+T+ + D KQ + + + +S+ D + KEI Sbjct: 24 KITKIQNMSKQLKIAWEELDIYKQLLTENMKLTLRKDEESKKIDTINFNDYSEVKEIIYN 83 Query: 94 ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153 I ++ + D + I+ G GG EA +F +LF MYE + L+ ++ + ++ Sbjct: 84 LENICDSIVKQLLDIYTNFIV---PGVGGQEAKMFANELFSMYEHFCKLKNYECLIKNNK 140 Query: 154 DNDDG--GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 ++G YK IVA I G GV+ E G+HRVQR+P S ++ TS + V + E Sbjct: 141 LIEEGKGIYKNIVADIKGEGVYIDFIQEIGIHRVQRIPI--NSKKMQTSTSIVLLFDEKQ 198 Query: 212 -----EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQN 265 E + IP + I+T R+ G+GGQ VN ++ V+I H PT I V SQ QN Sbjct: 199 TKEKLEKKMKIPKNEFLIETKRSGGAGGQSVNKNETCVKIIHKPTNIFVEVQKTSSQIQN 258 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 + AM++++ +LY+ ++ ++K Q +GDRSE+IRTYNFS + DH N+ Sbjct: 259 KSIAMEMIKNKLYNFYYEQEKINFLKDKKNQKQNGDRSEKIRTYNFSHNTVIDHIANVQY 318 Query: 326 YKLEYVLQG 334 ++ +G Sbjct: 319 TGIDQFFKG 327 >gi|195351215|ref|XP_002042131.1| GM10257 [Drosophila sechellia] gi|194123955|gb|EDW45998.1| GM10257 [Drosophila sechellia] Length = 166 Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats. Identities = 73/154 (47%), Positives = 101/154 (65%), Gaps = 4/154 (2%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P A+I V I +D++I+T RASG+GGQHVNTTDSAVRI H+PTG+ V SE+SQ +NR Sbjct: 1 PRPADIQVHIAEKDLKIETKRASGAGGQHVNTTDSAVRIVHLPTGLAVEAQSERSQLKNR 60 Query: 267 LRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRI-NLTL 325 AMK LR+RL + + + + A +K Q GS +R+E+IRTYNF Q RITDHRI TL Sbjct: 61 ELAMKRLRSRLVQQQLESVEASKMATKKAQQGSLNRNEKIRTYNFVQDRITDHRIQGGTL 120 Query: 326 YKLEYVLQG--YIDDIINPLLTAHQAKMIGSASE 357 + L+ L+G + +I L H+ + + + Sbjct: 121 HNLDGFLKGGDQLSGLIEKLQLEHRRERLKELLD 154 >gi|221060184|ref|XP_002260737.1| Peptide chain release factor [Plasmodium knowlesi strain H] gi|193810811|emb|CAQ42709.1| Peptide chain release factor, putative [Plasmodium knowlesi strain H] Length = 263 Score = 110 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 79/216 (36%), Positives = 113/216 (52%), Gaps = 8/216 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR- 170 +E R G GG EA L+ +L Y+ +A +VE + + I+ Sbjct: 24 VRIEFRPGVGGEEAFLWSTELLNTYKAFAERINCRVERVHDASESLLVVSPSDVCITQEG 83 Query: 171 -----GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRI 224 ++ +K ESG+H+V+RVP E+ G++H+S AT+AV L E + +I L+D+RI Sbjct: 84 YEIKTTLYDLLKNESGIHQVKRVPRNESKGKIHSSTATIAVFLHEDEQKKDEINLKDLRI 143 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERK 283 T R+S GGQ+VN +S V I H PTGI E++Q N+ AMK L ++ K Sbjct: 144 TTFRSSKPGGQNVNKIESGVSILHKPTGIKTECQEERTQEMNKKIAMKRLIQKVLQFRHK 203 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 + E R I RS RIRTYNF +G ITDH Sbjct: 204 QSEEELRGERAKLIKDSSRSSRIRTYNFFRGYITDH 239 >gi|23335364|ref|ZP_00120601.1| COG1186: Protein chain release factor B [Bifidobacterium longum DJO10A] Length = 240 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 52/203 (25%), Positives = 93/203 (45%), Gaps = 6/203 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + LK ++E + + D + + +S S++ + Q D+ T++ Sbjct: 25 DVDRLKADIKDLETQAAAPGLWDDPENAQKITSRLSAAESQLKRLNSASQRIDDVETLVE 84 Query: 68 D--HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D + D AQ E+ I+K++ ++E + D++S ++ IR+G GG +A Sbjct: 85 LGHEEGDQDSLDEAQSEIGEIQKDLDQMEIQTL----LDGEYDERSAVVTIRSGAGGVDA 140 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 A F L RMY RY +K +V+ +S ++ G K + + R+ E G HR+ Sbjct: 141 ADFAQMLLRMYLRYCERNGFKAKVMDTSYAEEAGIKSATFQVDAPYAYGRLSVEGGTHRL 200 Query: 186 QRVPATEASGRVHTSAATVAVLP 208 R+ + GR TS A V V+P Sbjct: 201 VRISPFDNQGRRQTSFAAVEVVP 223 >gi|213861334|ref|ZP_03385804.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 197 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 70/200 (35%), Positives = 104/200 (52%), Gaps = 6/200 (3%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVF 173 L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K ISG + Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKISGEYAY 117 Query: 174 SRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLE-DIRIDTMRASGS 232 ++ E+GVHR+ R ++ GR HTS ++ V PE + D+RID RASG+ Sbjct: 118 GWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDIDINPADLRIDVYRASGA 177 Query: 233 GGQHVNTTDSAVRITHIPTG 252 GGQHVN T+SAVRITHIPTG Sbjct: 178 GGQHVNRTESAVRITHIPTG 197 >gi|301347115|ref|ZP_07227856.1| peptide chain release factor 2 [Acinetobacter baumannii AB056] gi|301512357|ref|ZP_07237594.1| peptide chain release factor 2 [Acinetobacter baumannii AB058] gi|301597511|ref|ZP_07242519.1| peptide chain release factor 2 [Acinetobacter baumannii AB059] Length = 113 Score = 109 bits (273), Expect = 6e-22, Method: Composition-based stats. Identities = 46/114 (40%), Positives = 62/114 (54%), Gaps = 6/114 (5%) Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--AN 292 H+N TDSAVR+THIPTGI+V +++SQH NR A K LRA+LY++E ++ + Sbjct: 1 HINKTDSAVRLTHIPTGIVVACQNQRSQHANRDHAWKQLRAKLYELEMQKRNEAAQALED 60 Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 K IG G +IR+Y RI D R + VL G +D I L Sbjct: 61 SKSDIGWG---SQIRSYVLDDSRIKDLRTGVENSNTGAVLDGDLDRFIEASLKQ 111 >gi|289178305|gb|ADC85551.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [Bifidobacterium animalis subsp. lactis BB-12] Length = 115 Score = 109 bits (271), Expect = 8e-22, Method: Composition-based stats. Identities = 50/110 (45%), Positives = 72/110 (65%), Gaps = 1/110 (0%) Query: 246 ITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE 304 +THIPTGI+V+ EKSQ QNR A++VL++RL ++ ++ A E + R Q+ S DRSE Sbjct: 1 MTHIPTGIVVSMQDEKSQIQNRAAALRVLKSRLLAMKHEQEAAEAADMRHSQVRSLDRSE 60 Query: 305 RIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGS 354 RIRTYNF + RI DHR N Y L+ VL G + +I+ + A + + + S Sbjct: 61 RIRTYNFPENRIVDHRTNYKAYNLDAVLDGDLQAVIDSDIQADEEQRLAS 110 >gi|71900159|ref|ZP_00682300.1| PCRF [Xylella fastidiosa Ann-1] gi|71730108|gb|EAO32198.1| PCRF [Xylella fastidiosa Ann-1] Length = 270 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 66/180 (36%), Positives = 106/180 (58%), Gaps = 7/180 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M +++ L R E+E +S+ D + + E A ++PI + ++ + K Sbjct: 1 MKPTLRRKLEALAERHEELERLLSDPKIASDTDRFRTYSRELAQLAPIATTLAEETRTKA 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + T+ +D E+R+LA+ E+ + + L+ ++ LL+P+D D+ + LE+R Sbjct: 61 DLAAAETL----RTDPEMRELAEQEIAIAQAHLTTLDEQLQRLLIPQDPRDECNLFLEVR 116 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 AGTGG EAA+F G+LFRMY RYA ++WKVEV S + + GGYKEI+A I GRG +SR+K Sbjct: 117 AGTGGDEAAIFAGNLFRMYTRYAERQRWKVEVESDTPGEHGGYKEIIARIVGRGAYSRLK 176 >gi|124808906|ref|XP_001348439.1| peptide chain release factor 1, putative [Plasmodium falciparum 3D7] gi|23497333|gb|AAN36878.1|AE014820_28 peptide chain release factor 1, putative [Plasmodium falciparum 3D7] Length = 304 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 88/245 (35%), Positives = 128/245 (52%), Gaps = 9/245 (3%) Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL-SSSDNDDGGYKEI 163 D+ +E R G GG EA + +L Y+ +A K KVE + SD+ KE Sbjct: 59 YNDNKNFIRIEFRPGVGGEEAFTWSKELLNTYKLFAERNKCKVEKIQDISDSLVISSKEN 118 Query: 164 VATISGR-----GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL-PEAAEIDVDI 217 + I ++ K ESG+H+V+R+P ++ R+H+S ATVA+ + E +I Sbjct: 119 LRIIKEDKQIEINLYDLFKNESGIHQVKRIPKNDSKNRIHSSTATVAIFFHKKEEPKYEI 178 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRAR 276 L+D++I T R+S GGQ+VN +S V I H PTG E++Q N+ AMK L + Sbjct: 179 NLKDLKISTFRSSKPGGQNVNKIESGVCILHKPTGIQTECQEERTQELNKKLAMKRLIQK 238 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYI 336 + +E K N R I +RS RIRTYNF +G ITDH IN L Y +G + Sbjct: 239 IQHMESKEKENMVQHERAKLIKESNRSNRIRTYNFFRGYITDH-INKKKIDLIYFEKGKL 297 Query: 337 DDIIN 341 + I+N Sbjct: 298 EYILN 302 >gi|289806630|ref|ZP_06537259.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 97 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 66/94 (70%) Query: 264 QNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINL 323 + + +A+ VL AR++ E + ++ R+ +GSGDRS+R RTYNF QGR+TDHRINL Sbjct: 2 KTKAKALSVLGARIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINL 61 Query: 324 TLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 TLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 62 TLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 95 >gi|331674376|ref|ZP_08375136.1| peptide chain release factor 2 (RF-2) [Escherichia coli TA280] gi|331068470|gb|EGI39865.1| peptide chain release factor 2 (RF-2) [Escherichia coli TA280] Length = 184 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 44/189 (23%), Positives = 86/189 (45%), Gaps = 8/189 (4%) Query: 23 MSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 M + + L +E +++ ++ + Q ++ L + + + + + Sbjct: 1 MEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDEETFNEAV 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 A + E ++ + + D C L+I+AG+GG+EA + L RMY R+ Sbjct: 61 -----AELDALEEKLAQLEFRRMFSGEYDSADCYLDIQAGSGGTEAQDWASMLERMYLRW 115 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHT 199 A R +K E++ S+ + G K + ISG + ++ E+GVHR+ R ++ GR HT Sbjct: 116 AESRGFKTEIIEESEGEVAGIKSVTIKISGDYAYGWLRTETGVHRLVRKSPFDSGGRRHT 175 Query: 200 SAATVAVLP 208 S ++ P Sbjct: 176 SFSSAVCYP 184 >gi|325114215|emb|CBZ49772.1| putative peptide chain release factor 1 [Neospora caninum Liverpool] Length = 489 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 87/308 (28%), Positives = 134/308 (43%), Gaps = 62/308 (20%) Query: 94 ENEINYLLLPKDTDDDKSC-ILEIRAGTGGSEAALFVGDLFRMYERYAALRK-WKVEVLS 151 E L+P++ + + + I+EIR GG EA L+ DL MY R+ L+K W+ L Sbjct: 182 EAIEKVALMPEEENKNANVAIVEIRPAAGGEEAQLWATDLAEMYTRFFELQKTWRFAQLQ 241 Query: 152 SSDNDDG-----------------------------------------GYKEIVATISGR 170 + + G G I + G Sbjct: 242 LAGPNAGSKSPALQRRDDAAPARRKSRAGSSRPTSKEEERNAVSGALGGVTCIAFRVEGP 301 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 GV+ ++ ESGVHRVQRVP TE V + D+ I T R+S Sbjct: 302 GVYRQLLKESGVHRVQRVPRTETQN----------------FQGVALDEADLVIRTARSS 345 Query: 231 GSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQ+VN ++AV + H PTGI + E++Q N+ A ++L +L + + + Sbjct: 346 GCGGQNVNKVETAVDLLHAPTGIRIFCQQERTQAANKKAAKEILLKKLAARHEEEVVQQM 405 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHR-INLT-LYKLEYVLQGYIDDIINPLLTAH 347 R+ Q+ SG RSER+RTYNF GR+ +HR L+ L+ +L+G + + L Sbjct: 406 REERREQVCSGLRSERVRTYNFRDGRVNEHRLTGGEGLFALKPILEGQLHALHARLDRQE 465 Query: 348 QAKMIGSA 355 + + Sbjct: 466 AEQRVRQM 473 >gi|301346253|ref|ZP_07226994.1| peptide chain release factor 2 [Acinetobacter baumannii AB056] gi|301513591|ref|ZP_07238828.1| peptide chain release factor 2 [Acinetobacter baumannii AB058] gi|301596660|ref|ZP_07241668.1| peptide chain release factor 2 [Acinetobacter baumannii AB059] Length = 201 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 58/206 (28%), Positives = 104/206 (50%), Gaps = 6/206 (2%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 + +E + +I+ + + ++ + + + + + +S + D+ + E Sbjct: 1 MAKEKGELENVINVLDGLSTQLEDAKAMLDLAVEADDESLLEDVQ-----SELSTAEEEL 55 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 ++ + + + D C +EI+AG+GG+EA + L RMY R+ +K E++ SD Sbjct: 56 AKLEFRRMFSNPMDPNPCYVEIQAGSGGTEAQDWASMLLRMYMRWIERHGFKAELMEVSD 115 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEI 213 D G K + G + ++ ESGVHR+ R ++ R HTS + V + PE I Sbjct: 116 GDVAGIKSATIRVEGEYAYGWLRTESGVHRLVRKSPFDSGNRRHTSFSAVFISPEVDDNI 175 Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNT 239 ++DI D+R DT RASG+GGQH+N Sbjct: 176 EIDINPSDVRTDTYRASGAGGQHINK 201 >gi|270289542|ref|ZP_06195844.1| peptide chain release factor 2 [Chlamydia muridarum Weiss] Length = 182 Score = 106 bits (265), Expect = 5e-21, Method: Composition-based stats. Identities = 78/168 (46%), Positives = 104/168 (61%), Gaps = 2/168 (1%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A WKVEV+ D + G K I + G + K ESGVHR+ R+ +++ Sbjct: 1 MYSRWANSHGWKVEVIDRLDGEVAGIKHITLKLIGEYAYGYAKAESGVHRLVRISPFDSN 60 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 + HTS A+V V PE + +V+I DIRIDT R+SG+GGQHVN TDSAVRITH PTGI Sbjct: 61 AKRHTSFASVEVFPEIDDKIEVEIRPGDIRIDTYRSSGAGGQHVNVTDSAVRITHFPTGI 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 +V SE+SQ QNR M +LRAR+Y + +++ NRK + S Sbjct: 121 VVSCQSERSQIQNREACMNMLRARIYQKLLQERLEKQNTNRKEKKKSA 168 >gi|156101992|ref|XP_001616689.1| peptide chain release factor 1 [Plasmodium vivax SaI-1] gi|148805563|gb|EDL46962.1| peptide chain release factor 1, putative [Plasmodium vivax] Length = 263 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 73/216 (33%), Positives = 112/216 (51%), Gaps = 8/216 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR- 170 +E R G GG EA L+ +L Y+ +A +VE + + I+ + Sbjct: 24 IRIEFRPGVGGEEALLWSRELLNTYKTFAERMNCRVERVHDAGESLVVTSPSDVCIAKQG 83 Query: 171 -----GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV-LPEAAEIDVDIPLEDIRI 224 ++ K ESG+H+V+RVP E+ G++H+S AT+AV L ++ L+D+RI Sbjct: 84 QEIKASLYDLFKNESGIHQVKRVPRNESKGKIHSSTATIAVFLHTDEHRKDEVNLKDLRI 143 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERK 283 T R+S GGQ+VN +S V I H PTG+ E++Q N+ A+K L ++ + K Sbjct: 144 KTFRSSKPGGQNVNKIESGVSILHKPTGMQTECQEERTQEMNKKIALKRLTEKISHLRHK 203 Query: 284 RMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 + + R + RS RIRTYNF +G ITDH Sbjct: 204 QSEEQLRRERSKLVKDSSRSRRIRTYNFFRGYITDH 239 >gi|225631245|ref|ZP_03787932.1| peptide chain release factor 1 [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591056|gb|EEH12251.1| peptide chain release factor 1 [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 178 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 72/178 (40%), Positives = 108/178 (60%), Gaps = 3/178 (1%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + DLK +F +IE + ++ +I L++EY+ + PII I Y+ K+E DL Sbjct: 1 MENNLQDLKKKFNDIERNLENPTNLSQKEFITLSKEYSELRPIIKIIDEYNTLKEEISDL 60 Query: 63 HTVIGDHNSDSEIRD-LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 ++ D NS+ +I++ + + + +++ ++ LLPKD DD ++ ILEIRAGTG Sbjct: 61 EEIMKDENSEGDIKELAKEEFFEKHKVLLPKIKAKLKLALLPKDEDDSRNAILEIRAGTG 120 Query: 122 GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 G EAALF LFRMY++YA R WK E +S S+ GGYKE A I+G VF+R+KFE Sbjct: 121 GEEAALFAAMLFRMYQKYAERRNWKFEPISISNTGIGGYKEASALINGTEVFARLKFE 178 >gi|163803384|ref|ZP_02197260.1| putative peptide chain release factor 2 [Vibrio sp. AND4] gi|159172846|gb|EDP57688.1| putative peptide chain release factor 2 [Vibrio sp. AND4] Length = 193 Score = 106 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 44/195 (22%), Positives = 86/195 (44%), Gaps = 5/195 (2%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 + L +E A++ I+ I +Q ++ + L + + ++ Sbjct: 3 NEPERAQALGKERASLEAIVETIVQLEQGVEDVEGLLELAVEEEDQETFDEIEPE----- 57 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E+ ++ + + D C ++++AG+GG+EA + + RMY R+A + +K Sbjct: 58 LAELEGKLEKLEFRRMFSGDHDSSDCYIDLQAGSGGTEAQDWTNMMLRMYLRWAEAKGFK 117 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 EV+ S+ + G K ISG + ++ E+GVHR+ R ++ GR HTS A+ + Sbjct: 118 SEVIEVSEGEVAGLKGATVKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFASAFI 177 Query: 207 LPEAAEIDVDIPLED 221 PE + Sbjct: 178 YPEIDDNINIDINPS 192 >gi|82540995|ref|XP_724771.1| peptide chain release factor 1 [Plasmodium yoelii yoelii str. 17XNL] gi|23479536|gb|EAA16336.1| peptide chain release factor 1 [Plasmodium yoelii yoelii] Length = 2075 Score = 106 bits (263), Expect = 8e-21, Method: Composition-based stats. Identities = 76/284 (26%), Positives = 128/284 (45%), Gaps = 7/284 (2%) Query: 43 SPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 + I+ + +++ + + + + N L Sbjct: 1770 ENVSESITQNISGQNNISIIYSTNILRLNIKKNFENEPSIRKLCVLRPKRSLNNEKPFLN 1829 Query: 103 PKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKE 162 ++ + +E R+G GG EA L+ +L ++Y+ YA +K V+ + + N Sbjct: 1830 SENVLNKNHVRIEFRSGIGGDEAELWSNELKKIYQNYAEKKKCTVKSVKDATNSLIIKSP 1889 Query: 163 IVATIS------GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 I+ ++ K ESG+H+V+R+P E ++ +S AT+AV + + Sbjct: 1890 NDVKINKEGEEIQISLYDLFKNESGIHQVKRIPKNENKEKIQSSTATIAVFIQDYANKYE 1949 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I +D++I T R+S GGQ+VN +SAVRI H TGI + E++Q N+ AMK L Sbjct: 1950 INSKDLKIMTFRSSKPGGQNVNKIESAVRIVHTHTGIQAESQKERTQELNKKIAMKKLTQ 2009 Query: 276 RLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 +++D+ + R RS RIRTYNF G ITDH Sbjct: 2010 KIHDLRNREKEQSLQNERSKFTKDCSRSNRIRTYNFFTGYITDH 2053 >gi|56808306|ref|ZP_00366070.1| COG1186: Protein chain release factor B [Streptococcus pyogenes M49 591] Length = 214 Score = 105 bits (262), Expect = 9e-21, Method: Composition-based stats. Identities = 55/218 (25%), Positives = 106/218 (48%), Gaps = 5/218 (2%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 ++ A +E M+E + I + ++ + K + ++ + ++ + Sbjct: 1 MEEEIALLENHMTEPDFXNDNIAAQKTSQELNELKGKYDTFHNMQELSDETELLLEMLDE 60 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D +++ + ++ + ++ LL + D + ILEI G+GG+EA + Sbjct: 61 DDSLKEELEENLMQ----LDKIMGAYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDL 116 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY R+ +KVEVL D+ G K + + G + +K E GVHR+ R+ Sbjct: 117 LLRMYTRFGNANGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLVRISPF 176 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMR 228 +++ R HTS A+V V+PE I+V++ +DI++DT + Sbjct: 177 DSAKRRHTSFASVEVMPELDDTIEVEVRDDDIKMDTFQ 214 >gi|99034620|ref|ZP_01314576.1| hypothetical protein Wendoof_01000612 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] Length = 89 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 51/89 (57%), Positives = 69/89 (77%), Gaps = 1/89 (1%) Query: 269 AMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKL 328 A+KVLRARLY++ER++ ERS RK QIGSGDRSERIRTYNF Q RITDHRINLT ++L Sbjct: 1 ALKVLRARLYEIERQKKEMERSTMRKSQIGSGDRSERIRTYNFPQSRITDHRINLTSHRL 60 Query: 329 EYVL-QGYIDDIINPLLTAHQAKMIGSAS 356 E ++ +G +D+ I L++ ++A+ + S Sbjct: 61 EQIIKEGELDEFIEALISRNEAERLAGES 89 >gi|226510582|ref|NP_001146175.1| hypothetical protein LOC100279745 [Zea mays] gi|219886065|gb|ACL53407.1| unknown [Zea mays] Length = 184 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 83/164 (50%), Positives = 115/164 (70%), Gaps = 1/164 (0%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY+RY WK + +S S+ + GGYK V + G+ V+S++KFESGVHRVQRVP TEA Sbjct: 1 MYQRYCERNNWKFKPVSCSEAEMGGYKTYVMEVKGKQVYSKLKFESGVHRVQRVPLTEAM 60 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI- 253 GRVHTS ATVA++PEA E+DV I +DI + T R+ G+GGQ+VN ++AV + H PTGI Sbjct: 61 GRVHTSTATVAIMPEADEVDVVIDPKDIELKTARSGGAGGQNVNKVETAVDLIHKPTGIR 120 Query: 254 MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 + + E+SQ QNR RA ++LRA+LY+++ + RKLQ+ Sbjct: 121 IFCTEERSQLQNRERAFQLLRAKLYEIKLREQQESLRNQRKLQV 164 >gi|116248645|gb|ABJ90461.1| peptide chain release factor 1 [Pseudoalteromonas haloplanktis] Length = 158 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 117/158 (74%), Gaps = 2/158 (1%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY RYA +KWKVEV+S+++ + GGYKE++A ISG GV+ ++KFESGVHRVQRVP TE+ Sbjct: 1 MYSRYAEDKKWKVEVVSTNEGEHGGYKEVIANISGEGVYGQLKFESGVHRVQRVPETESQ 60 Query: 195 GRVHTSAATVAVL-PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 GRVHTSA TVAV+ + I D+++DT RASG+GGQHVN TDSA+R+THIPTG+ Sbjct: 61 GRVHTSACTVAVMAEVPEAEAIQINTADLKVDTFRASGAGGQHVNKTDSAIRLTHIPTGV 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 +V ++SQH+NR +AM VL ARL E ++ + Sbjct: 121 VVECQDQRSQHKNRAKAMSVLAARLQQAEDEKRHAAEA 158 >gi|255024491|ref|ZP_05296477.1| peptide chain release factor 1 [Listeria monocytogenes FSL J1-208] Length = 165 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 59/164 (35%), Positives = 99/164 (60%), Gaps = 4/164 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V +L ++E + I+ + Y ++ + Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNEQINETK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 ++G+ D E+R++A+ E+ ++KE +LE + LL+PKD +DDK+ ILEIR GG Sbjct: 63 ELLGEKLDD-EMREMAKEELAELQKEKADLEERLKLLLVPKDPNDDKNVILEIRGAAGGD 121 Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 EAALF GDLFRMY +YA R WKVE++ ++ GGYKEI+A + Sbjct: 122 EAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKEIIAMM 165 >gi|156094764|ref|XP_001613418.1| peptide chain release factor [Plasmodium vivax SaI-1] gi|148802292|gb|EDL43691.1| peptide chain release factor, putative [Plasmodium vivax] Length = 334 Score = 104 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 82/302 (27%), Positives = 129/302 (42%), Gaps = 42/302 (13%) Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY-- 139 + + L + I + SC L + +GTGG+EA F L+ MY +Y Sbjct: 35 CKSSKRVSKKCLSSYIKKDVENYSKYFKNSCSLILSSGTGGTEACDFCSMLYNMYMKYLS 94 Query: 140 --AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 + K EV+ S N+ G K++ I G F E G+HR+ R A + Sbjct: 95 KLKNKKNIKYEVIDLSKNEV-GIKKVEIKIDGEYSFYNFVSEKGIHRMVRNSPFNAQNKK 153 Query: 198 HTSAATVAVLP------------------------------EAAEIDVDIPLEDIRIDTM 227 TS V V+P ++ + D+ I TM Sbjct: 154 MTSFVKVDVIPTLSYNDTNVINFLNIAESSSPSVKKNMNSRNINVNEIALNKSDLVIQTM 213 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G GGQ+VN ++AVRI H PT I V SSE+SQ N+ A+K + +L ++ + + Sbjct: 214 RSGGKGGQNVNKVETAVRILHKPTNISVKVSSERSQILNKRIALKTIYEKLLYLQLEALK 273 Query: 287 NERSA-NRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDIINPL 343 N++ + K G E+IR Y + I D R N++ ++ VL QG I+ ++ Sbjct: 274 NKKYEFSNKSLTHFG---EQIRNYILYGNKMIKDTRTNVSSTDVDRVLSQGEIELFVDAY 330 Query: 344 LT 345 Sbjct: 331 KK 332 >gi|70951470|ref|XP_744973.1| peptide chain release factor 1 [Plasmodium chabaudi chabaudi] gi|56525140|emb|CAH78733.1| peptide chain release factor 1, putative [Plasmodium chabaudi chabaudi] Length = 260 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 93 LENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSS 152 L N + +E R G GG EA L+ +L + Y+ YA +K V+ + Sbjct: 5 LFNLHINKENVFLNKNKNHIRIEFRPGIGGDEAELWSNELKKTYQNYAEKKKCSVKSVKD 64 Query: 153 SDNDDGGYKEIVATIS------GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 N I+ ++ K ESG H+V+R+P E+ ++H+S AT+A+ Sbjct: 65 ITNSIIIKSPTDVQINKDGEEIQISLYDLFKNESGTHQVKRIPKNESKDKIHSSTATIAI 124 Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQN 265 + +I +D++I T R+S GGQ+VN +S VRI HIPTG + E++Q N Sbjct: 125 FIQDDADKYEINSKDLKIMTFRSSKPGGQNVNKIESGVRIVHIPTGIQTESQEERTQELN 184 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDH 319 + AMK L +++D+ + E R + RS RIRTYNF G ITDH Sbjct: 185 KRIAMKKLTQKIHDLRSREKEEELQNERSKLVKKCHRSSRIRTYNFFTGYITDH 238 >gi|88607753|ref|YP_505069.1| peptide chain release factor 2, truncation [Anaplasma phagocytophilum HZ] gi|88598816|gb|ABD44286.1| peptide chain release factor 2, truncated [Anaplasma phagocytophilum HZ] Length = 226 Score = 103 bits (257), Expect = 4e-20, Method: Composition-based stats. Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 7/222 (3%) Query: 26 SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLA 85 + L E + +S +++ + +++ ++ +L +I D + + A Sbjct: 2 EDDAEKAKSLLSERSRVSAVLTSFRVLEKEHKDLAELAEMISDSDD-----RDFLATINA 56 Query: 86 IEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA-LRK 144 + ++ ++ + D SC L IR+G GG+E++ +V L RMY ++A + Sbjct: 57 ELQSLKLRISQKKTECMFSHEADANSCFLTIRSGAGGTESSDWVCMLLRMYTKWAESFHE 116 Query: 145 WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATV 204 + VE + S D ++ G K + I G G + + ESG+HR+ R+ + + + HTS A+V Sbjct: 117 FTVETVDSVDGEETGLKAVTVKICGIGAYGWARTESGIHRLVRISPFDHAAKRHTSFASV 176 Query: 205 AVLPEAAEIDVDIP-LEDIRIDTMRASGSGGQHVNTTDSAVR 245 V P +D+RIDT RASG+GGQHVN T+SAVR Sbjct: 177 EVSPVVDHEIDIKILEKDLRIDTYRASGAGGQHVNKTESAVR 218 >gi|121730460|ref|ZP_01682775.1| conserved domain protein [Vibrio cholerae V52] gi|121627803|gb|EAX60412.1| conserved domain protein [Vibrio cholerae V52] Length = 156 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 56/156 (35%), Positives = 91/156 (58%), Gaps = 5/156 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + + + L++EY+ + I Y Q K+ Sbjct: 1 MKASILSKLESLVERYEEVQHLLGDPTVIGDQNKFRALSKEYSQLEEITQCFQAYQQAKE 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + + D+E+R++AQ E+ A + I L +E+ LLLPKD +DD++C LEIR Sbjct: 61 DLVAAEEMAQE--DDAEMREMAQDEIKAAKAAIERLTDELQILLLPKDPNDDRNCFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153 AG GG EA +F GDLFRMY R+A + W++EV+SSS Sbjct: 119 AGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSS 154 >gi|221051906|ref|XP_002257529.1| peptidyl-trna hydrolase [Plasmodium knowlesi strain H] gi|193807359|emb|CAQ37864.1| peptidyl-trna hydrolase, putative [Plasmodium knowlesi strain H] Length = 334 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 82/306 (26%), Positives = 129/306 (42%), Gaps = 42/306 (13%) Query: 78 LAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYE 137 + + + L + I + SC L + +GTGG+EA F L+ MY Sbjct: 31 YSFLCKSVKRVSKKCLSSYIRKDVENYSKYFKNSCSLILSSGTGGTEACDFCSMLYNMYM 90 Query: 138 RY----AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEA 193 +Y + K EV+ S N+ G K++ I G F E G+HR+ R A Sbjct: 91 KYLSKLKNKKNIKYEVMDLSKNEV-GIKKVEIKIDGEYSFYNFVSEKGIHRMVRNSPFNA 149 Query: 194 SGRVHTSAATVAVLP------------------------------EAAEIDVDIPLEDIR 223 + TS V V+P ++ + D+ Sbjct: 150 QNKKMTSFVKVDVIPTLSYNDTNVINFLNIAESSSTPVKKTLNSRNINVNEIPLNKSDLV 209 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 I TMR+ G GGQ+VN ++AVRI H PT I V SSE+SQ N+ A+K + +L ++ Sbjct: 210 IQTMRSGGKGGQNVNKVETAVRILHKPTNISVKVSSERSQILNKRIALKTIYEKLLYLQL 269 Query: 283 KRMANERSA-NRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDI 339 + + N++ + K G E+IR Y + I D R N+ ++ VL QG I+ Sbjct: 270 EALKNKKYEFSNKSLTHFG---EQIRNYILYGNKMIKDTRTNVFSTDVDRVLSQGEIELF 326 Query: 340 INPLLT 345 ++ Sbjct: 327 VDAYKK 332 >gi|194697006|gb|ACF82587.1| unknown [Zea mays] Length = 95 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 47/94 (50%), Positives = 66/94 (70%), Gaps = 1/94 (1%) Query: 264 QNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINL 323 N+ +A+KVLRARLY++ER+R+ +RS R QIGSGDRSERIRTYNF QGR+TDHR+ + Sbjct: 1 MNKAKALKVLRARLYELERRRLHMDRSKLRSEQIGSGDRSERIRTYNFPQGRVTDHRVGV 60 Query: 324 TLYKLEYVLQGY-IDDIINPLLTAHQAKMIGSAS 356 T + + V++G +D ++ LL + I S Sbjct: 61 THHSIADVMEGESLDMFVDALLLQEEMDAIASFG 94 >gi|226320937|ref|ZP_03796485.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] gi|226233639|gb|EEH32372.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] Length = 88 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 51/85 (60%), Positives = 66/85 (77%) Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 MK+LRARLY+ E + +RS+NRK Q+GSGDRSERIRTYNF Q RITDHR N+TLYKLE Sbjct: 1 MKILRARLYEFEDSKKQEQRSSNRKQQVGSGDRSERIRTYNFPQNRITDHRANITLYKLE 60 Query: 330 YVLQGYIDDIINPLLTAHQAKMIGS 354 +QG +D +++PL+ A Q + + S Sbjct: 61 EFMQGELDPLLDPLMIALQEQELKS 85 >gi|297604413|ref|NP_001055378.2| Os05g0375600 [Oryza sativa Japonica Group] gi|255676317|dbj|BAF17292.2| Os05g0375600 [Oryza sativa Japonica Group] Length = 407 Score = 102 bits (254), Expect = 9e-20, Method: Composition-based stats. Identities = 70/323 (21%), Positives = 134/323 (41%), Gaps = 14/323 (4%) Query: 27 PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAI 86 D K E +A++ I + + + ++ + D +L + Sbjct: 95 NLWDNPAKSHETLSALADAIRVVDHLKDLRYKAEEAKLISQLSEMDVINVELFKQAYKTS 154 Query: 87 EKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 L+ Y LL D + +CI+ T GS+ +F MY +A + K Sbjct: 155 VDATEFLDRYQMYKLLKGPYDKEGACII----VTAGSDERIFC-----MYSSWARKQGCK 205 Query: 147 VEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV 206 ++ + G I +F + E G HR+ P+ + +G ++A V + Sbjct: 206 DGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMIY-PSVDNAGTYEATSARVDI 264 Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQN 265 +P + V++ L++ ++ + S S + + +SA+R+ HI TG+ SS E+S N Sbjct: 265 IPLFLDRPVNLHLDENDLE-ISPSPSDHKRRDHRNSAIRVQHIRTGVTAESSGERSYFAN 323 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF-SQGRITDHRINLT 324 +++A+ L+A+L + R+ ++ ++ + S R Y F Q + D L Sbjct: 324 KMKAISRLKAKLLVISRELRSSNLKTIKRQTVEE-LYSRETRRYKFGPQKLVHDLNTGLQ 382 Query: 325 LYKLEYVLQGYIDDIINPLLTAH 347 L +L VL G ID I + + Sbjct: 383 LSELNSVLDGDIDPFIRGRIVSR 405 >gi|325066842|ref|ZP_08125515.1| peptide chain release factor RF1 [Actinomyces oris K20] Length = 68 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 36/64 (56%) Query: 294 KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIG 353 + Q+ + DRSERIRTYNF + RI DHR Y L+ VL G + +I + +A+ + Sbjct: 1 RSQVRTVDRSERIRTYNFPENRIADHRTGFKAYNLDAVLDGDLGPVIASAIAMDEAERLS 60 Query: 354 SASE 357 E Sbjct: 61 QVGE 64 >gi|328466430|gb|EGF37577.1| peptide chain release factor 2 [Lactobacillus rhamnosus MTCC 5462] Length = 189 Score = 101 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 74/187 (39%), Positives = 109/187 (58%), Gaps = 2/187 (1%) Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 D DL E ++ +L ++ LL D + ILEI G GG+E+ + Sbjct: 4 DEPDPDLQHEEETKLKDLQEKL-DQYEMQLLLNGPYDHNNAILEIHPGAGGTESQDWGSM 62 Query: 132 LFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT 191 L RMY+R+A +KVEV D+ G K + I+G + +K E GVHR+ R+ Sbjct: 63 LMRMYQRWADQNGFKVEVADYQPGDEAGIKSVTLLINGENAYGLLKSEKGVHRLVRISPF 122 Query: 192 EASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 +++GR HTS A+V V+PE I+VDI EDI+++ R+SG+GGQH+N T SAVR+ H+P Sbjct: 123 DSAGRRHTSFASVDVMPELDNSIEVDIRPEDIKMEVFRSSGAGGQHINKTSSAVRLIHLP 182 Query: 251 TGIMVTS 257 TGI+ +S Sbjct: 183 TGIVTSS 189 >gi|159900504|ref|YP_001546751.1| ATPase [Herpetosiphon aurantiacus ATCC 23779] gi|159893543|gb|ABX06623.1| ATPase AAA-2 domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 1027 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 62/349 (17%), Positives = 119/349 (34%), Gaps = 21/349 (6%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + + R E+ MS D + + +S + ++ D ++ D Sbjct: 693 LIKQLNVVEARERQTELMDEMSSPSFWDDHEQAQFLLTELSNVARRVGRCDDLRRLYDDA 752 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ +E R ++ +A E E+ L + D ILE Sbjct: 753 DQLLQRIRERNERRLFPELMRMAKRLERDLRFAELEMLFSNPEDWHDAYIILESDQA--- 809 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 +V +L Y ++ ++++ +V+ + +D + ISG G F ++ E+G Sbjct: 810 --GLRWVRNLANAYLEWSLGKRFEAKVIDETPAEDN-LIRVTLQISGSGAFGLLRSEAGT 866 Query: 183 HRVQRVPATEASGRVHTSAA-TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 HR + T R+ T + VLP E DI + M + + G + Sbjct: 867 HR---ISETGGEPRLKTVTQVQITVLPVPTEDTPAPASSDIEMAVMN-TRADGYFLRKLR 922 Query: 242 SAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGD 301 R H +G + S+ R + +L RL + Sbjct: 923 VTGRAIHRYSGAAAFACAGSERAVREMLLSILLGRLAMKQLDDFIQPSDDA--------- 973 Query: 302 RSERIRTYNF-SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 +R+Y+ + I D R + + L G +D I L A Sbjct: 974 WGSVVRSYHLGKRSTIKDPRTEIVHTNPKAALAGELDLFIEAALRWRAA 1022 >gi|221133060|ref|XP_002169670.1| PREDICTED: similar to peptide chain release factor, putative, partial [Hydra magnipapillata] Length = 171 Score = 100 bits (248), Expect = 4e-19, Method: Composition-based stats. Identities = 60/167 (35%), Positives = 99/167 (59%), Gaps = 2/167 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMS--ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ L R ++ ++ + + KL++EY+ ++ I I+ K+ E+ Sbjct: 1 MSFDNKLNRLVERHIDLRDLLATHDMKDAKDFAKLSKEYSDLTDIAEAIADLRNKQAEKN 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DL ++ D + D+E++ LAQ + + +E+ +E +I LLLPKD DD+++ ILE+RAGT Sbjct: 61 DLAAMLSDSSLDTEMKQLAQSDYDLLLEELPNIEQQIKVLLLPKDADDERNAILEVRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 GG EA LF LFRMY+RYAA + W+ E+++ SD G KE A+I Sbjct: 121 GGEEAGLFAAVLFRMYQRYAANKGWRFEIIAMSDTGLGAIKEASASI 167 >gi|169838354|ref|ZP_02871542.1| protease Do [candidate division TM7 single-cell isolate TM7a] Length = 351 Score = 99.5 bits (246), Expect = 8e-19, Method: Composition-based stats. Identities = 30/86 (34%), Positives = 52/86 (60%) Query: 272 VLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYV 331 ++ +RL + ++ + +A R+ IGSGDRSE+IRTYNF Q RITDHRI+ + + Sbjct: 266 IITSRLLQSKIEKEQAKLTAERRSLIGSGDRSEKIRTYNFPQDRITDHRISYSRSGIPQA 325 Query: 332 LQGYIDDIINPLLTAHQAKMIGSASE 357 + G I+D+ L + + + + ++ Sbjct: 326 MDGNINDLTEHLQSYERELLAKNIND 351 >gi|68072219|ref|XP_678023.1| peptide chain release factor [Plasmodium berghei strain ANKA] gi|56498354|emb|CAH99275.1| peptide chain release factor, putative [Plasmodium berghei] Length = 329 Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 80/306 (26%), Positives = 125/306 (40%), Gaps = 39/306 (12%) Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 ++ + + L + I SC L + +GTGG+EA F L+ Sbjct: 26 YKNAFFLCKGVKNVKKSYLSSYIRKDAENYSKYFKNSCSLILSSGTGGTEACDFCNMLYN 85 Query: 135 MYERY----AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 MY +Y + K EV+ S N+ G K++ + G F + E G+HR+ R Sbjct: 86 MYMKYLGKIKNKKYIKYEVIDISKNEI-GIKKVEIKVDGEYSFYNLISEKGIHRLVRNSP 144 Query: 191 TEASGRVHTSAATVAVLP----------------------------EAAEIDVDIPLEDI 222 + + TS V V+P ++ + D+ Sbjct: 145 FNSQNKKMTSFVKVDVIPSLSYNDTNIVNFLNINENDNISLKKNNNMRNMNEMLVNKSDL 204 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 I TMR+ G GGQ+VN ++AVRI H PT I V SSE+SQ N+ A+K++ LY Sbjct: 205 VIQTMRSGGKGGQNVNKVETAVRIIHKPTNISVKVSSERSQILNKRIALKMIEKLLYLQI 264 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDDI 339 + + K G E+IR Y + I D R N+ +++ +L QG ID Sbjct: 265 EALKNVKYELSNKSLTHFG---EQIRNYILYGNKMIKDTRTNVFSTEIDKILSQGEIDIF 321 Query: 340 INPLLT 345 + Sbjct: 322 VEAYQK 327 >gi|163803524|ref|ZP_02197393.1| protein chain release factor B [Vibrio sp. AND4] gi|159172659|gb|EDP57512.1| protein chain release factor B [Vibrio sp. AND4] Length = 103 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 6/103 (5%) Query: 246 ITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDR 302 +TH+PT +V +++SQH+N+ +AMK LRA+L+++E ++ E+ AN K IG G Sbjct: 1 MTHVPTNTVVQCQNDRSQHKNKDQAMKQLRAKLFELELQKQNAEKQANEDAKSDIGWG-- 58 Query: 303 SERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R + + VL G +D I L Sbjct: 59 -SQIRSYVLDDSRIKDLRTGVENRNTQAVLDGDLDKFIEASLK 100 >gi|270659693|ref|ZP_06222357.1| peptide chain release factor 1 [Haemophilus influenzae HK1212] gi|270316971|gb|EFA28651.1| peptide chain release factor 1 [Haemophilus influenzae HK1212] Length = 170 Score = 99.1 bits (245), Expect = 1e-18, Method: Composition-based stats. Identities = 80/165 (48%), Positives = 119/165 (72%), Gaps = 4/165 (2%) Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 Q ++ ++ D E++++AQ+E+ + EI E+E ++ LLLPKD +D+ +C LEI Sbjct: 2 QNIEEAEILL----DDPEMKEMAQMEIEESKAEIEEVEQQLQILLLPKDPNDEYNCYLEI 57 Query: 117 RAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRM 176 RAGTGG EA +F GDLFRMY RYA ++W+VE+LS+++++ GGYKE++ ++G GV+ ++ Sbjct: 58 RAGTGGDEAGIFAGDLFRMYSRYAESKRWRVEMLSANESEQGGYKELIVKVTGEGVYGQL 117 Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED 221 KFESG HRVQRVP TE+ GR+HTSA TVAV+PE A ++ Sbjct: 118 KFESGGHRVQRVPKTESQGRIHTSACTVAVMPEFAISLLNANNNT 162 >gi|62719461|gb|AAX93331.1| peptide chain release factor 2 [Lactobacillus sanfranciscensis] Length = 156 Score = 98.0 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 60/146 (41%), Positives = 93/146 (63%), Gaps = 8/146 (5%) Query: 185 VQRVPATEASGRVHTSAATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 + R+ +++GR HTS A+V V+PE + DI +D+RID R+SG+GGQH+N T SA Sbjct: 14 LVRLSPFDSAGRRHTSLASVNVMPELDENANGDINPDDLRIDVFRSSGAGGQHINKTSSA 73 Query: 244 VRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ--IGSG 300 VRITH+PTGI+ + +++SQ QNR+ AM +L+++LY++E ++ A E++ Q IG G Sbjct: 74 VRITHLPTGIVTSSQAQRSQLQNRVTAMNMLKSKLYELEEEKKAEEKAKIEGKQLEIGWG 133 Query: 301 DRSERIRTYNFSQG-RITDHRINLTL 325 +IR+Y F + DH Sbjct: 134 ---SQIRSYVFHPYTMVKDHGTGHET 156 >gi|82540115|ref|XP_724399.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23479026|gb|EAA15964.1| Peptidyl-tRNA hydrolase domain, putative [Plasmodium yoelii yoelii] Length = 330 Score = 97.6 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 80/307 (26%), Positives = 129/307 (42%), Gaps = 40/307 (13%) Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 ++ + + L + I SC L + +GTGG+EA F L+ Sbjct: 26 YKNAFFLCKGVKNVKKNYLSSYIRKDAENYSKYFKNSCSLILSSGTGGTEACDFCNMLYN 85 Query: 135 MYERY----AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 MY +Y + K EV+ S N+ G K++ + G F + E G+HR+ R Sbjct: 86 MYMKYLGKIKNKKNIKYEVIDISKNEI-GIKKVEIKVDGEYSFYNLISEKGIHRLVRNSP 144 Query: 191 TEASGRVHTSAATVAVLP----------------------------EAAEIDVDIPLEDI 222 + + TS V V+P ++ + D+ Sbjct: 145 FNSQNKKMTSFVKVDVIPSLSYNDTNIVNFLNINENDNISLKKNNNMRNMNEMLVNKSDL 204 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 I TMR+ G GGQ+VN ++AVRI H PT I V SSE+SQ N+ A+K++ +L ++ Sbjct: 205 VIQTMRSGGKGGQNVNKVETAVRIIHKPTNISVKVSSERSQILNKRIALKMIYEKLLYLQ 264 Query: 282 RKRMANERSANR-KLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKLEYVL-QGYIDD 338 + + N + K G E+IR Y + I D R N+ +++ +L QG ID Sbjct: 265 IEALKNVKYELSNKSLTHFG---EQIRNYILYGNKMIKDTRTNVFSTEIDKILSQGEIDI 321 Query: 339 IINPLLT 345 + Sbjct: 322 FVEAYQK 328 >gi|281414235|ref|ZP_06245977.1| peptide chain release factor 2 [Micrococcus luteus NCTC 2665] Length = 129 Score = 96.8 bits (239), Expect = 4e-18, Method: Composition-based stats. Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%) Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG Q V SAVR+TH+PTGI+V+ +EKSQ QNR A++VL++RL + Sbjct: 1 SSGPASQSVGAPHSAVRMTHLPTGIVVSMQNEKSQIQNRAAALRVLQSRLLLLR----KA 56 Query: 288 ERSANRKLQIGS--GDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 E A +K G +++R+Y + + + D R V G+IDD ++ + Sbjct: 57 EEDAKKKEMAGDVKASWGDQMRSYVLNPYQMVKDLRTGHEEGNPSSVFDGHIDDFVDAGI 116 Query: 345 TAHQAKMIGSASE 357 +A+ + +A E Sbjct: 117 RW-RAEQVKAAQE 128 >gi|167948500|ref|ZP_02535574.1| peptide chain release factor 2 (programmed frameshift) [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 105 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 38/104 (36%), Positives = 58/104 (55%), Gaps = 6/104 (5%) Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGD 301 RITH PTGI+V +++SQH+N+ +AMK L+A+LY++E ++ + + K IG Sbjct: 2 RITHNPTGIVVQCQNDRSQHKNKDQAMKQLKAKLYELEIQKQRETQQAVEDTKSDIGW-- 59 Query: 302 RSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +IR+Y RI D R N+ + VL G +D I L Sbjct: 60 -DSQIRSYVLDASRIKDLRTNVETGNTQAVLDGGLDIFIEASLK 102 >gi|68076525|ref|XP_680182.1| peptide chain release factor 1 [Plasmodium berghei strain ANKA] gi|56501082|emb|CAH94168.1| peptide chain release factor 1, putative [Plasmodium berghei] Length = 252 Score = 94.9 bits (234), Expect = 2e-17, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 123/248 (49%), Gaps = 8/248 (3%) Query: 97 INYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND 156 + +E R G GG EA L+ +L ++Y+ YA +K KV+ + N Sbjct: 1 NKNNENVFLNKNKNHIRIEFRPGIGGDEAELWSKELKKIYQSYANKKKLKVKSVKDITNS 60 Query: 157 DGGYKEIVATIS------GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEA 210 I+ ++ K ESG H+V+R+P E ++ +S AT+A+ + Sbjct: 61 LIIKSPNDVKINKDGKEIQISLYDLFKNESGTHQVKRIPKNENKEKIQSSTATIAIFIQN 120 Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTS-SEKSQHQNRLRA 269 +I L+D++I T R+S GGQ+VN +SAVRI H TGI S E++Q N+ A Sbjct: 121 YINKYEINLKDLKIMTFRSSKPGGQNVNKIESAVRIVHTHTGIQAESHEERTQELNKKIA 180 Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 MK L +++D++ + R +RS RIRTYNF G ITDH +N Y L Sbjct: 181 MKRLTQKIHDLQNREKEEFLQNERIKFTKDCNRSNRIRTYNFFTGYITDH-VNNRKYDLM 239 Query: 330 YVLQGYID 337 Y +G ++ Sbjct: 240 YFEKGKLE 247 >gi|213583753|ref|ZP_03365579.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 166 Score = 94.5 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 63/163 (38%), Positives = 103/163 (63%), Gaps = 7/163 (4%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAGTGG E Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAGTGGDE 123 Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 AALF GDLFRMY RYA R+W+VE++S S+ + GGYKEI+A I Sbjct: 124 AALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYKEIIAKI 166 >gi|291533125|emb|CBL06238.1| Protein chain release factor B [Megamonas hypermegale ART12/1] Length = 182 Score = 93.7 bits (231), Expect = 4e-17, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 100/161 (62%), Gaps = 2/161 (1%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY R+A + VE D+ G K + I G + +K E GVHR+ R+ +A+ Sbjct: 1 MYGRWAERNGFSVETADLLPGDEAGVKSVTLLIKGHNAYGYLKSEKGVHRLVRISPFDAN 60 Query: 195 GRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 R HTS + V+PE + +VDI + D+R+DT RASG+GGQH+N TDSAVR+THIPTG+ Sbjct: 61 SRRHTSFSACDVMPEIDDDVEVDINMADVRVDTYRASGAGGQHINKTDSAVRMTHIPTGV 120 Query: 254 MV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 + SE+SQ QNR + +++LRARL+++E ++ + Sbjct: 121 VAQCQSERSQLQNREQCLRLLRARLFELEMEKKEKNLQHLK 161 >gi|226294428|gb|EEH49848.1| peptide chain release factor 1 [Paracoccidioides brasiliensis Pb18] Length = 315 Score = 92.6 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 63/208 (30%), Positives = 108/208 (51%), Gaps = 11/208 (5%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 + + A + +++ES + K + ++ + + +D+ + +L+ ++ D + Sbjct: 112 SIADEHASLTSKLAESFNP----KTAKRVGELATTATALKEWDKAHESISELNALLEDSS 167 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 +DSE+R LA ++ + L + L+P+ D C+LE+R G GG EA +F Sbjct: 168 TDSELRSLALEDLQTTMASLSVLSENLKQALIPRHPFADLPCLLELRPGAGGDEAGIFAN 227 Query: 131 DLFRMYERYAALRKWKVEVL---SSSDNDDGGYKEI----VATISGRGVFSRMKFESGVH 183 +L RMY + A R + +L S + GG ++ V I G + ++ E+GVH Sbjct: 228 ELLRMYTMFCANRGLRATLLKKESENAGASGGSEDRLAEAVMEIETPGSYETLRTEAGVH 287 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAA 211 RVQRVPATE+ GR HTSA +VA+LP Sbjct: 288 RVQRVPATESKGRTHTSAGSVAILPSFP 315 >gi|209526204|ref|ZP_03274734.1| peptide chain release factor 1 [Arthrospira maxima CS-328] gi|209493301|gb|EDZ93626.1| peptide chain release factor 1 [Arthrospira maxima CS-328] Length = 98 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 1/91 (1%) Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 RA+++LRA+LYD++ + + ++ R+ Q+G+G RSE+IRTYN+ RITDHR+ Sbjct: 5 LERAIQILRAKLYDIKLQERQEKVTSLRRSQVGTGARSEKIRTYNYKDNRITDHRLGQNF 64 Query: 326 YKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 L +L G ID ++ ++ Q + + + Sbjct: 65 T-LANILDGDIDQVMEACISQDQQERLEQLA 94 >gi|194699680|gb|ACF83924.1| unknown [Zea mays] Length = 174 Score = 92.2 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 59/163 (36%), Positives = 83/163 (50%), Gaps = 2/163 (1%) Query: 99 YLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 L D + ++ I AG GG++A + L RMY R+ +++K V+ S ++ Sbjct: 1 MTQLLSGPYDKEGAVINISAGAGGTDAQDWADMLLRMYVRWGEKQRYKTRVVEKSPGEEA 60 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP--EAAEIDVD 216 G K + GR + + E G HR+ R A G TS A V V+P + VD Sbjct: 61 GIKSATVELEGRYAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLPEESMAVD 120 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSE 259 IP ED+ I RA G GGQ+VN ++AVR+ HIPTGI V S Sbjct: 121 IPEEDLEISFTRAGGKGGQNVNKVETAVRMVHIPTGIAVRCSG 163 >gi|56203457|emb|CAI18896.1| mitochondrial translational release factor 1-like [Homo sapiens] Length = 164 Score = 91.8 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 74/140 (52%), Positives = 93/140 (66%), Gaps = 1/140 (0%) Query: 143 RKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAA 202 + S S GG + A+I G + MKFE GVHRVQRVP TE GRVHTS Sbjct: 24 NGRNNKNNSISLYFQGGLRHASASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTM 83 Query: 203 TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKS 261 TVA+LP+ EI++ I +D+RIDT RASG+GGQHVNTTDSAVRI H+PTG++ E+S Sbjct: 84 TVAILPQPTEINLVINPKDLRIDTKRASGAGGQHVNTTDSAVRIVHLPTGVVSECQQERS 143 Query: 262 QHQNRLRAMKVLRARLYDVE 281 Q +N+ AM LRA+LY + Sbjct: 144 QLKNKELAMTKLRAKLYSMH 163 >gi|145627801|ref|ZP_01783602.1| peptide chain release factor 2 [Haemophilus influenzae 22.1-21] gi|144979576|gb|EDJ89235.1| peptide chain release factor 2 [Haemophilus influenzae 22.1-21] Length = 174 Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 65/160 (40%), Gaps = 8/160 (5%) Query: 10 CDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 R E+ + + D L +E ++ +++ I +Q ++ L + Sbjct: 17 DAKVERLEEVNAELEQPDVWNAPDKAQALGKERVSLEQVVNTIKNLEQGLEDVDGLLELA 76 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAA 126 + + + A E+ + ++ + + D C ++++AG+GG+EA Sbjct: 77 IEAEDEDTFNEAV-----AELDELEQQLEKLEFRRMFGGEHDACDCYVDLQAGSGGTEAQ 131 Query: 127 LFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 + L RMY R+A + +K E++ SD D G K Sbjct: 132 DWTEMLLRMYLRWAESKGFKTELMEVSDGDVAGLKSATIK 171 >gi|70936414|ref|XP_739155.1| peptide release factor [Plasmodium chabaudi chabaudi] gi|56515938|emb|CAH84701.1| peptide release factor, putative [Plasmodium chabaudi chabaudi] Length = 210 Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 67/181 (37%), Positives = 99/181 (54%), Gaps = 8/181 (4%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAA-----EID 214 K I+A I G GV+ E G+HRVQR+P S ++ TS + V + E E Sbjct: 1 SKNIIAHIKGEGVYVDFIQEIGIHRVQRIPI--NSKKMQTSTSIVLLFDEKQTKEKLEKK 58 Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVL 273 + IP D I+T R+ G+GGQ VN ++ V+ITH PT I V SQ QN+ AM ++ Sbjct: 59 MKIPKNDFIIETKRSGGAGGQSVNKNETCVKITHKPTNIFVEVQKTSSQIQNKSIAMDMI 118 Query: 274 RARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 + +LY+ ++ ++K Q +GDRSE+IRTYNFS + DH N+ ++ + Sbjct: 119 KNKLYNFYYEQEKMNFLKDKKNQKQNGDRSEKIRTYNFSHNTVIDHIANVQYTGIDQFFK 178 Query: 334 G 334 G Sbjct: 179 G 179 >gi|289678407|ref|ZP_06499297.1| peptide chain release factor 1 [Pseudomonas syringae pv. syringae FF5] Length = 145 Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 84/147 (57%), Gaps = 5/147 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L +RF E+ + ++ + + + EYA + P+++ + + + Sbjct: 1 MKASLLNKLDVLSDRFEELTALLGDAEVISDQTRFRAYSREYAEVEPVVTLYAQLLRVQG 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ D SD ++R++A EV +++ ELE ++ +LLPKD +D ++ LEIR Sbjct: 61 DLEGAQALLKD--SDPDMREMAVEEVRETRQQLVELEAQLQRMLLPKDPNDGRNVFLEIR 118 Query: 118 AGTGGSEAALFVGDLFRMYERYAALRK 144 AGTGG EAA+F GDLFRMY RYA R Sbjct: 119 AGTGGDEAAIFSGDLFRMYSRYAERRG 145 >gi|213583820|ref|ZP_03365646.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 95 Score = 89.9 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 51/96 (53%), Gaps = 5/96 (5%) Query: 253 IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYN 310 + +++SQH+N+ +AMK ++A+LY++E ++ E+ A K IG G +IR+Y Sbjct: 1 MTQCQNDRSQHKNKDQAMKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG---SQIRSYV 57 Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 RI D R + + VL G +D I L A Sbjct: 58 LDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 93 >gi|149003371|ref|ZP_01828260.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS69] gi|147758554|gb|EDK65552.1| peptide chain release factor 2 [Streptococcus pneumoniae SP14-BS69] Length = 165 Score = 89.9 bits (221), Expect = 6e-16, Method: Composition-based stats. Identities = 40/167 (23%), Positives = 76/167 (45%), Gaps = 4/167 (2%) Query: 20 ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLA 79 E +M+E + I + ++ + + + + + ++ + ++ ++ D + D Sbjct: 2 ENKMTEPDFWNDNIAAQKTSQELNELKNTYNTFHKMEELQDEVEILLDFLAEDESVHDEL 61 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E+ ++ LL + D + ILEI G+GG+EA + L RMY RY Sbjct: 62 VAQ----LAELDKIMTSYEMTLLLSEPYDHNNAILEIHPGSGGTEAQDWGDMLLRMYTRY 117 Query: 140 AALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQ 186 + +KVEVL D+ G K + + G + +K E GVHR+ Sbjct: 118 GNAKGFKVEVLDYQAGDEAGIKSVTLSFEGPNAYGLLKSEMGVHRLV 164 >gi|313226924|emb|CBY22069.1| unnamed protein product [Oikopleura dioica] Length = 394 Score = 89.5 bits (220), Expect = 7e-16, Method: Composition-based stats. Identities = 83/308 (26%), Positives = 146/308 (47%), Gaps = 9/308 (2%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 + ++ + + +L + SD+E++DL Q E+ E+ I E+E E+ +L Sbjct: 55 DLKTEAKNHTESLVYLNELSENVA-KESDAEMKDLLQEEIKEAEERIGEIEEEVFDVLAE 113 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 +T++ + + AG GG EA +F +L Y + W E ++ D ++G E Sbjct: 114 YETEEAEKANFVVEAGAGGDEAGIFARELLDHYLLFFEFMNWDYEQVNR-DEENGMLTEG 172 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 +SG F+R E+GVHRV R+P + + ++HTS V V P +DIP +++ Sbjct: 173 HIVVSGLNAFNRNLAEAGVHRVARIP--QNATKLHTSTCAVKVTPILERRLIDIPEKELD 230 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT----SSEKSQHQNRLRAMKVLRARLYD 279 I + R SG GGQ +NT + + HIP+GI T + N +A + LR+ L Sbjct: 231 ISSCRGSGKGGQKINTVHARAVVKHIPSGITTTYFEPGRNNTLAANIEKAKEELRSILQA 290 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDI 339 + E + + +R ERIR Y++S +TD+R + L+ G ++ Sbjct: 291 RQDAEFEREFLGFKNSMNTNFERGERIRNYSWSNNIVTDYRTKRK-FNLQKYFSGAGFEM 349 Query: 340 INPLLTAH 347 + + + Sbjct: 350 MEEIQEEY 357 >gi|323355075|gb|EGA86905.1| Mrf1p [Saccharomyces cerevisiae VL3] Length = 201 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 82/189 (43%), Positives = 111/189 (58%), Gaps = 9/189 (4%) Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 SD +R A+ E + + + + LLP DK +LE+R G GG EA +F Sbjct: 4 SDPSLRAEAEQEYAELVPQYETTSSRLVNKLLPPHPFADKPSLLELRPGVGGIEAMIFTQ 63 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 +L MY YA RKWK ++S ++N+ G G + + +I G + R++FE+GVHRVQR+P Sbjct: 64 NLLDMYIGYANYRKWKYRIISKNENESGSGIIDAILSIEEAGSYDRLRFEAGVHRVQRIP 123 Query: 190 ATEASGRVHTSAATVAVLPE--------AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241 +TE GR HTS A V VLP+ + +IR+D MRASG GGQHVNTTD Sbjct: 124 STETKGRTHTSTAAVVVLPQIGDESAKSIDAYERTFKPGEIRVDIMRASGKGGQHVNTTD 183 Query: 242 SAVRITHIP 250 SAVR+THIP Sbjct: 184 SAVRLTHIP 192 >gi|313622391|gb|EFR92858.1| peptide chain release factor 2 [Listeria innocua FSL J1-023] Length = 55 Score = 89.1 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Query: 293 RKLQIGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + +IG G +IR+Y F + DHR N ++ V+ G +DD IN L + Sbjct: 1 EQKEIGWG---SQIRSYVFHPYSMVKDHRTNYETGNIQAVMDGDLDDFINAYLRSR 53 >gi|156086270|ref|XP_001610544.1| peptide chain release factor 1 [Babesia bovis T2Bo] gi|154797797|gb|EDO06976.1| peptide chain release factor 1, putative [Babesia bovis] Length = 276 Score = 87.9 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 72/256 (28%), Positives = 126/256 (49%), Gaps = 25/256 (9%) Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 + ++EIR G GG+EA + +L + ++++ +K V+ + + Sbjct: 17 TNAQVVVEIRPGVGGTEANTWAQELAKAFKKFCQNKKCNVKEENIGSIIILHIQGDDDKF 76 Query: 168 SGRGVFS---RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD-------- 216 G R E+G+H+V+RVP +E +GR+H+S ATVAVLP Sbjct: 77 RENGCTGLEERFLREAGIHQVKRVPTSEKAGRMHSSTATVAVLPTELTKAKYEDILAKIV 136 Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I DI T R+SG+GGQ+VN ++A +TH PTGI + + E++Q +N+ A++ L+ Sbjct: 137 IDPRDIEWKTCRSSGAGGQNVNKVETAAALTHKPTGIRIESQEERTQSKNKEIALEKLKI 196 Query: 276 RLYDVERKRMANERSANRKLQIGSGD------------RSERIRTYNFSQGRITDHRINL 323 +L + ++ RK Q+ + + RSER++TY F+ +I + R Sbjct: 197 QLAKDIESDVRHDAQNRRKEQVKAIEMNYICTQIKGSKRSERLKTYFFNTHQIINDRCGC 256 Query: 324 TLYKLEYVLQGYIDDI 339 Y L L+ ++ + Sbjct: 257 K-YNLNDFLKFKLEKV 271 >gi|30694592|ref|NP_191278.2| peptide chain release factor, putative [Arabidopsis thaliana] gi|332646104|gb|AEE79625.1| putative peptide chain release factor [Arabidopsis thaliana] Length = 406 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 59/351 (16%), Positives = 138/351 (39%), Gaps = 15/351 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + ++ + E M D K E ++ + K + ++ Sbjct: 63 MFAPDALELEEEQWIKQEETMRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEA 122 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D+ L + + R L + L +D D + + I++G+ G Sbjct: 123 KLIIQLGEMDAIDYSLFEQAYDSSLDVSRSL-HHYEMSKLLRDQYDAEGACMIIKSGSPG 181 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSD--NDDGGYKEIVATISGRGVFSRMKFES 180 +++ ++ + MY ++A V ++ G + + E Sbjct: 182 AKSQIWTEQVVSMYIKWAERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGER 241 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHR+ + +T +ATV ++P D +++ + S + Sbjct: 242 GVHRLI-ISSTSN----EECSATVDIIPLFLRASPDFEVKEGDLIV---SYPAKEDHKIA 293 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++ V I HIP+G+ + +S E+++ NR++A+ L+A+L + +++ ++ + I Sbjct: 294 ENMVCIHHIPSGVTLQSSGERNRFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI-- 351 Query: 300 GDRSERIRTYNFS-QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + E R+Y + D + L + L+ VL G I ++ ++ ++ Sbjct: 352 LEPREETRSYVSKGHKMVVDRKTGLEILDLKSVLDGNIGPLLGAHISMRRS 402 >gi|315283645|ref|ZP_07871778.1| peptide chain release factor 2 [Listeria marthii FSL S4-120] gi|313612712|gb|EFR86721.1| peptide chain release factor 2 [Listeria marthii FSL S4-120] Length = 70 Score = 87.2 bits (214), Expect = 4e-15, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%) Query: 281 ERKRMANERSANRKLQ--IGSGDRSERIRTYNFSQG-RITDHRINLTLYKLEYVLQGYID 337 E++ E + R Q IG G +IR+Y F + DHR + ++ V+ G +D Sbjct: 2 EQEEKERELAEIRGEQKEIGWG---SQIRSYVFHPYSMVKDHRTSYETGNIQAVMDGDLD 58 Query: 338 DIINPLLTAH 347 D IN L + Sbjct: 59 DFINAYLRSR 68 >gi|297817036|ref|XP_002876401.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp. lyrata] gi|297322239|gb|EFH52660.1| hypothetical protein ARALYDRAFT_324229 [Arabidopsis lyrata subsp. lyrata] Length = 409 Score = 86.8 bits (213), Expect = 5e-15, Method: Composition-based stats. Identities = 62/353 (17%), Positives = 133/353 (37%), Gaps = 16/353 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + ++ + E M D K E ++ + K + ++ Sbjct: 63 MFAPDALELEEEQWIKQEETMRYYDLWDDPAKSDEILLKLADRAKTVDSLKDLKYKAEEA 122 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG- 121 +I D+ L + + R L + LL D + +C++ Sbjct: 123 KLIIQLGEMDAIDYSLFEQAYDSSLDVSRSLHHYEMSKLLTDQYDAEGACMIIKSGSQDA 182 Query: 122 -GSEAALFVGDLFRMYERYAALRKWKVEVLSSSDN--DDGGYKEIVATISGRGVFSRMKF 178 + ++ + MY ++A V + G + + Sbjct: 183 KSQDLQIWTEQVVSMYIKWAEKLGQNARVAEKCSFLSNKSGVNSATIEFEFDFAYGYLLG 242 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHR+ + +T + +ATV ++P D +++ D + S ++ Sbjct: 243 ERGVHRLI-ISSTSS----EECSATVDIIPLFLRASPDF---EVKEDDLIVSYPAKENHK 294 Query: 239 TTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 ++ V I HIP+GI V SS E+++ NR++A+ L+A+L + +++ ++ + I Sbjct: 295 IAENMVSIQHIPSGITVESSGERNRFANRIKALNRLKAKLLVIAKEQKISDVNKINSKNI 354 Query: 298 GSGDRSERIRTYNFS-QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 E R Y Q + D + L + L+ VL G I ++ ++ ++ Sbjct: 355 --LKPWEETRRYVSKGQKMVVDTKTGLEILDLKSVLDGNIGPLLGAHISMRRS 405 >gi|22135990|gb|AAM91577.1| putative protein [Arabidopsis thaliana] gi|30725574|gb|AAP37809.1| At3g57190 [Arabidopsis thaliana] Length = 372 Score = 86.0 bits (211), Expect = 8e-15, Method: Composition-based stats. Identities = 59/351 (16%), Positives = 138/351 (39%), Gaps = 15/351 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + ++ + E M D K E ++ + K + ++ Sbjct: 29 MFAPDALELEEEQWIKQEETMRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEA 88 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +I D+ L + + R L + L +D D + + I++G+ G Sbjct: 89 KLIIQLGEMDAIDYSLFEQAYDSSLDVSRSL-HHYEMSKLLRDQYDAEGACMIIKSGSPG 147 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSD--NDDGGYKEIVATISGRGVFSRMKFES 180 +++ ++ + MY ++A V ++ G + + E Sbjct: 148 AKSQIWTEQVVSMYIKWAERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLGER 207 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHR+ + +T +ATV ++P D +++ + S + Sbjct: 208 GVHRLI-ISSTSN----EECSATVDIIPLFLRASPDFEVKEGDLIV---SYPAKEDHKIA 259 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++ V I HIP+G+ + +S E+++ NR++A+ L+A+L + +++ ++ + I Sbjct: 260 ENMVCIHHIPSGVTLQSSGERNRFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI-- 317 Query: 300 GDRSERIRTYNFS-QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + E R+Y + D + L + L+ VL G I ++ ++ ++ Sbjct: 318 LEPREETRSYVSKGHKMVVDRKTGLEILDLKSVLDGNIGPLLGAHISMRRS 368 >gi|6735298|emb|CAB68125.1| putative protein [Arabidopsis thaliana] Length = 409 Score = 85.2 bits (209), Expect = 1e-14, Method: Composition-based stats. Identities = 58/353 (16%), Positives = 133/353 (37%), Gaps = 16/353 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + + + ++ + E M D K E ++ + K + ++ Sbjct: 63 MFAPDALELEEEQWIKQEETMRYFDLWDDPAKSDEILLKLADRAKAVDSLKDLKYKAEEA 122 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG- 121 +I D+ L + + R L + LL D + +C++ G Sbjct: 123 KLIIQLGEMDAIDYSLFEQAYDSSLDVSRSLHHYEMSKLLRDQYDAEGACMIIKSGSPGA 182 Query: 122 -GSEAALFVGDLFRMYERYAALRKWKVEVLSSSD--NDDGGYKEIVATISGRGVFSRMKF 178 + ++ + MY ++A V ++ G + + Sbjct: 183 KSQDLQIWTEQVVSMYIKWAERLGQNARVAEKCSLLSNKSGVSSATIEFEFEFAYGYLLG 242 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 E GVHR+ + +T +ATV ++P D +++ + S + Sbjct: 243 ERGVHRLI-ISSTSN----EECSATVDIIPLFLRASPDFEVKEGDLIV---SYPAKEDHK 294 Query: 239 TTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 ++ V I HIP+G+ + +S E+++ NR++A+ L+A+L + +++ ++ + I Sbjct: 295 IAENMVCIHHIPSGVTLQSSGERNRFANRIKALNRLKAKLLVIAKEQKVSDVNKIDSKNI 354 Query: 298 GSGDRSERIRTYNFS-QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQA 349 + E R+Y + D + L + L+ VL G I ++ ++ ++ Sbjct: 355 --LEPREETRSYVSKGHKMVVDRKTGLEILDLKSVLDGNIGPLLGAHISMRRS 405 >gi|332213671|ref|XP_003255948.1| PREDICTED: peptide chain release factor 1-like, mitochondrial isoform 4 [Nomascus leucogenys] Length = 235 Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 38/209 (18%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GR+HTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRIHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 233 >gi|46190861|ref|ZP_00121023.2| COG1186: Protein chain release factor B [Bifidobacterium longum DJO10A] Length = 115 Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 4/115 (3%) Query: 245 RITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 RITH+PTGI+V E+SQ QNR AM VL++RL + + A ++ S Sbjct: 2 RITHLPTGIVVTMQDERSQIQNRASAMAVLQSRLLVLRHEEEAKKKKELAGDIKAS--WG 59 Query: 304 ERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +++R+Y + + D R + + V G I+ I + + + +E Sbjct: 60 DQMRSYVLHPYQMVKDLRTGYETSQTQAVFDGDINAFIEAGIRWRHEQRRAAETE 114 >gi|253730877|ref|ZP_04865042.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253725386|gb|EES94115.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus USA300_TCH959] Length = 59 Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 288 ERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + K IG G+ +IR+Y RI D R + + VL G +D I L A Sbjct: 2 KAMEGNKSDIGWGN---QIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 57 >gi|77415494|gb|AAI05974.1| MTRF1L protein [Homo sapiens] Length = 235 Score = 83.7 bits (205), Expect = 4e-14, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 38/209 (18%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 233 >gi|114609873|ref|XP_001140447.1| PREDICTED: mitochondrial translational release factor 1-like isoform 1 [Pan troglodytes] Length = 235 Score = 83.3 bits (204), Expect = 5e-14, Method: Composition-based stats. Identities = 86/209 (41%), Positives = 120/209 (57%), Gaps = 38/209 (18%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K+QE ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIRLLNEKEQELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 233 >gi|226294427|gb|EEH49847.1| peptide chain release factor 1 [Paracoccidioides brasiliensis Pb18] Length = 153 Score = 82.9 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 47/103 (45%), Positives = 66/103 (64%), Gaps = 4/103 (3%) Query: 236 HVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 HVN T+SA+R+THIPTGI+V +SQH+NR +A ++LRAR+ R+ E R+ Sbjct: 9 HVNKTESAIRLTHIPTGIVVGMQDSRSQHENRRKAWQLLRARIAQRRREAREEEMVKLRR 68 Query: 295 LQ---IGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 +G R ++IRTYNF Q R TDHR LTL+ L +++G Sbjct: 69 GAMGGVGKMGRGDKIRTYNFGQNRCTDHRSGLTLHNLVNIMEG 111 >gi|56203460|emb|CAI18899.1| mitochondrial translational release factor 1-like [Homo sapiens] Length = 235 Score = 82.6 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 85/209 (40%), Positives = 120/209 (57%), Gaps = 38/209 (18%) Query: 44 PIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLP 103 +++ I + ++K++E ++ ++ D N D +R LA+ E+ +KEI +L+++I LL+P Sbjct: 63 ELLAVIKLLNEKERELRETEHLLHDENED--LRKLAENEITLCQKEITQLKHQIILLLVP 120 Query: 104 KDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEI 163 + D+ ILE+ AG G GG + Sbjct: 121 SEETDENDLILEVTAGVG------------------------------------GGLRHA 144 Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 A+I G + MKFE GVHRVQRVP TE GRVHTS TVA+LP+ EI++ I +D+R Sbjct: 145 SASIGGSEAYRHMKFEGGVHRVQRVPKTEKQGRVHTSTMTVAILPQPTEINLVINPKDLR 204 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTG 252 IDT RASG+GGQHVNTTDSAVRI H+PT Sbjct: 205 IDTKRASGAGGQHVNTTDSAVRIVHLPTD 233 >gi|146340|gb|AAA23958.1| peptide-chain-release factor 2 [Escherichia coli] Length = 72 Score = 82.6 bits (202), Expect = 1e-13, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%) Query: 276 RLYDVERKRMANERS--ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQ 333 +LY++E ++ E+ + K IG G +IR+Y RI D R + + VL Sbjct: 1 KLYELEMQKKNAEKQAMEDNKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLD 57 Query: 334 GYIDDIINPLLTA 346 G +D I L A Sbjct: 58 GSLDQFIEASLKA 70 >gi|213855686|ref|ZP_03383926.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 78 Score = 82.2 bits (201), Expect = 1e-13, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 5/79 (6%) Query: 270 MKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTYNFSQGRITDHRINLTLYK 327 MK ++A+LY++E ++ E+ A K IG G +IR+Y RI D R + Sbjct: 1 MKQMKAKLYELEMQKKNAEKQAMEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRN 57 Query: 328 LEYVLQGYIDDIINPLLTA 346 + VL G +D I L A Sbjct: 58 TQAVLDGSLDQFIEASLKA 76 >gi|213616409|ref|ZP_03372235.1| hypothetical protein SentesTyp_18844 [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 65 Score = 81.8 bits (200), Expect = 2e-13, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 281 ERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDII 340 ++K + + K IG G +IR+Y RI D R + + VL G +D I Sbjct: 1 QKKNAEKQAMEDTKSDIGWG---SQIRSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFI 57 Query: 341 NPLLTA 346 L A Sbjct: 58 EASLKA 63 >gi|220679233|emb|CAX12804.1| novel protein similar to H.sapiens MTRF1L, mitochondrial translational release factor 1-like (MTRF1L) [Danio rerio] Length = 273 Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 66/214 (30%), Positives = 115/214 (53%), Gaps = 14/214 (6%) Query: 6 HKQICDLKNRFA-EIELRMSESPSVDAYIKLTEE--YAAISPIISKISIYDQKKQEEQDL 62 + + + + S++ +++ T+ ++ ++ I + K++E +D+ Sbjct: 71 QDYLKKKQTEYNTSLNSINSQNQTLEDADMKTQRTNMTILAHLVHNIKKLEVKQKEMEDM 130 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ D +D E+ +LA+ E A+ +I++L D +LE+ AG GG Sbjct: 131 QDLLKD--NDPELLELAETEKEAVLADIQDLRQ---------KESDMSELVLEVSAGVGG 179 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGV 182 EA LF ++F MY+ YAA W +VL ++ ++ GG + A++SG + ++KFE+GV Sbjct: 180 QEAMLFTAEIFEMYQNYAAFNGWSFDVLEANASELGGVRHASASVSGPLSYKKLKFEAGV 239 Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 HRVQRVP TE+ GR HTS TVA+LP+ EI Sbjct: 240 HRVQRVPKTESKGRTHTSTMTVAILPQPTEISFT 273 >gi|195161900|ref|XP_002021796.1| GL26306 [Drosophila persimilis] gi|194103596|gb|EDW25639.1| GL26306 [Drosophila persimilis] Length = 313 Score = 81.4 bits (199), Expect = 2e-13, Method: Composition-based stats. Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 7/166 (4%) Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 G + + E G +H N + H Sbjct: 140 GGQEAMLFAQELFEMYTSYFEHMGWEYEEFARETTDIGGLRHANVMVNGADAFH-WLRF- 197 Query: 255 VTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQG 314 + + Q R A+K L+ARL + + + A +K Q GS +R+E+IRTYNF Q Sbjct: 198 --EAGVHRVQTRELALKRLQARLVQQQLESSEASKQATKKAQQGSLNRNEKIRTYNFVQD 255 Query: 315 RITDHRI-NLTLYKLEYVLQGY--IDDIINPLLTAHQAKMIGSASE 357 R+TDHRI TL+ L+ L+G + ++ L H+ + E Sbjct: 256 RVTDHRIQGGTLHNLDGFLKGGESLSGLVEKLQLEHRRSRLRDLLE 301 Score = 63.3 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 65/149 (43%), Gaps = 1/149 (0%) Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97 + + +++ + ++ + + + D + + + + + ++ + + Sbjct: 58 RLSQLEGVVNALEQRRVLERNITSAKDIEQEKDED-MRKLMEEENEVYADLLSKQEQTML 116 Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 LL D + + I + AG GG EA LF +LF MY Y W+ E + D Sbjct: 117 QELLALADDEVYPALIFGVNAGAGGQEAMLFAQELFEMYTSYFEHMGWEYEEFARETTDI 176 Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQ 186 GG + ++G F ++FE+GVHRVQ Sbjct: 177 GGLRHANVMVNGADAFHWLRFEAGVHRVQ 205 >gi|124511698|ref|XP_001348982.1| peptide chain release factor, putative [Plasmodium falciparum 3D7] gi|23498750|emb|CAD50820.1| peptide chain release factor, putative [Plasmodium falciparum 3D7] Length = 352 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 71/139 (51%), Gaps = 7/139 (5%) Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 D I D+ I TMR+ G GGQ+VN ++AVRI H PT I V SSE++Q N+ A Sbjct: 215 KMNDFVINKSDLVIQTMRSGGKGGQNVNKVETAVRILHKPTNISVKASSERTQLLNKRNA 274 Query: 270 MKVLRARLYDVERKRMANERSA-NRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYK 327 +K + +L ++ + + N++ K G E+IR Y + I D R N+ Sbjct: 275 LKRIYEKLLYLQTEALKNKKYELANKSLTHFG---EQIRNYVLYGNKMIKDTRTNVFSTD 331 Query: 328 LEYVL-QGYIDDIINPLLT 345 ++ VL QG ID I+ Sbjct: 332 IDKVLYQGEIDIFIDAYQK 350 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 5/139 (3%) Query: 85 AIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY----ERYA 140 + L + +N + SC L + +GTGG+EA F L+ MY R Sbjct: 25 RNIRNRYNLCSYVNKDVENYSRYFKNSCSLILSSGTGGTEACDFCNMLYNMYIKYLCRIK 84 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 + K EV+ S N+ G K++ I G F E G+HR+ R A + TS Sbjct: 85 NRKNIKYEVIDISKNEV-GIKKVEIKIDGEYSFYNFVSEKGIHRLVRNSPFNAQNKKMTS 143 Query: 201 AATVAVLPEAAEIDVDIPL 219 V V+P D+++ Sbjct: 144 FVKVDVIPTLNFNDLNVIN 162 >gi|302420205|ref|XP_003007933.1| peptide chain release factor 1 [Verticillium albo-atrum VaMs.102] gi|261353584|gb|EEY16012.1| peptide chain release factor 1 [Verticillium albo-atrum VaMs.102] Length = 253 Score = 81.0 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 65/193 (33%), Positives = 97/193 (50%), Gaps = 30/193 (15%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGG----------YKEIVATISGRGVFSRMKFESGVHR 184 MY++Y A ++ L D G +E V I G + + E+G+HR Sbjct: 1 MYKQYCAYMGYRAVALKYEMADGAGSASTSAGEEPLQEAVLEIKDAGAYGLFRGEAGMHR 60 Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEID-------------------VDIPLEDIRID 225 VQRVP TE SGR HTSA V VLP + + ++RI+ Sbjct: 61 VQRVPDTEKSGRTHTSAVAVWVLPSFPDSHEAAGGGGGGDMNVDDPASDFYLDPAELRIE 120 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKR 284 TMRA G+GGQHVN T+SA+R+TH+PTG +V+ + Q +NR A K++R+R+ + R+ Sbjct: 121 TMRARGAGGQHVNKTESAIRMTHLPTGTVVSMQDSRQQSRNREDAWKLMRSRVALLRREA 180 Query: 285 MANERSANRKLQI 297 + + R + Sbjct: 181 REEQAARLRDNDV 193 >gi|156305180|ref|XP_001617535.1| hypothetical protein NEMVEDRAFT_v1g157388 [Nematostella vectensis] gi|156194391|gb|EDO25435.1| predicted protein [Nematostella vectensis] Length = 80 Score = 80.6 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 268 RAMKVLRARLYDVERKRMANERSA--NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 MK LRA+LY++E + + K IG G +IR+Y RI D R + Sbjct: 1 TCMKQLRAKLYEMEMMKRNAAAQELEDSKADIGWG---SQIRSYVLDDQRIKDLRTGVQT 57 Query: 326 YKLEYVLQGYIDDIINPLLTA 346 + VL G +D I L A Sbjct: 58 SNCDRVLDGELDMFIEASLKA 78 >gi|323249067|gb|EGA32987.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 56 Score = 79.9 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 29/54 (53%), Positives = 42/54 (77%) Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 +R RTYNF QGR+TDHRINLTLY+L+ ++G +D +I P++ HQA ++ + SE Sbjct: 1 DRNRTYNFPQGRVTDHRINLTLYRLDETMEGKLDMLIEPIVQEHQADLLAALSE 54 >gi|218196675|gb|EEC79102.1| hypothetical protein OsI_19734 [Oryza sativa Indica Group] gi|222631381|gb|EEE63513.1| hypothetical protein OsJ_18329 [Oryza sativa Japonica Group] Length = 214 Score = 79.5 bits (194), Expect = 7e-13, Method: Composition-based stats. Identities = 52/215 (24%), Positives = 99/215 (46%), Gaps = 5/215 (2%) Query: 135 MYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 MY +A + K ++ + G I +F + E G HR+ P+ + + Sbjct: 1 MYSSWARKQGCKDGLVEKITSTSGRVWTAAIEIESEYMFGTLTGEKGTHRMIY-PSVDNA 59 Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 G ++A V ++P + V++ L++ ++ + S S + + +SA+R+ HI TG+ Sbjct: 60 GTYEATSARVDIIPLFLDRPVNLHLDENDLE-ISPSPSDHKRRDHRNSAIRVQHIRTGVT 118 Query: 255 VTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF-S 312 SS E+S N+++A+ L+A+L + R+ ++ ++ + S R Y F Sbjct: 119 AESSGERSYFANKMKAISRLKAKLLVISRELRSSNLKTIKRQTVEE-LYSRETRRYKFGP 177 Query: 313 QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 Q + D L L +L VL G ID I + + Sbjct: 178 QKLVHDLNTGLQLSELNSVLDGDIDPFIRGRIVSR 212 >gi|291454153|ref|ZP_06593543.1| peptide chain release factor 1 [Streptomyces albus J1074] gi|291357102|gb|EFE84004.1| peptide chain release factor 1 [Streptomyces albus J1074] Length = 223 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 10/136 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A+IE R+++ KL + YA ++PI+ + Q ++ + Sbjct: 3 EAVEELIGEHADIEKRLADPAVHADQAGARKLNKRYAELTPIVGTYRSWKQTGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKELEAAREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFVGDLFRMYERY 139 E+ALF GDL R R+ Sbjct: 116 ESALFAGDLLRPPRRW 131 >gi|239982309|ref|ZP_04704833.1| peptide chain release factor 1 [Streptomyces albus J1074] Length = 241 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 10/136 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A+IE R+++ KL + YA ++PI+ + Q ++ + Sbjct: 21 EAVEELIGEHADIEKRLADPAVHADQAGARKLNKRYAELTPIVGTYRSWKQTGEDIETAR 80 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 81 ELAADDPD-------FAAEVKELEAAREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 133 Query: 124 EAALFVGDLFRMYERY 139 E+ALF GDL R R+ Sbjct: 134 ESALFAGDLLRPPRRW 149 >gi|156084766|ref|XP_001609866.1| peptide chain release factor 2 [Babesia bovis T2Bo] gi|154797118|gb|EDO06298.1| peptide chain release factor 2, putative [Babesia bovis] Length = 281 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 27/224 (12%) Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYER----YAALRKW------------KVEV 149 D C + I AG GG+EA F L RMY+R Y W Sbjct: 39 EYDKNHCKVTITAGVGGTEAFDFCKMLGRMYKRFIQHYCQPESWNRELYGDLPRSLHYVD 98 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP- 208 + D GY+ + + G + K E G HR+ R A + T+ ++V V+P Sbjct: 99 GTVVPGDKAGYRILEFEVHGDYAYKLFKGEKGTHRLVRNSPYNAMRKRQTTFSSVQVVPL 158 Query: 209 --------EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSE 259 + E + +D+ ++TMR+ G GGQ+VN ++AVRITH TG+ V +E Sbjct: 159 LSADDRDVQHYESSKHVTEKDVIVETMRSGGKGGQNVNKVETAVRITHKKTGLSVRVQTE 218 Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303 +SQ QNR AM+ + + ++++ + + R ++ D Sbjct: 219 RSQSQNREIAMRRISEMVDAHYKEQLREKCNELRGEEVE-ADWG 261 >gi|23010857|ref|ZP_00051405.1| COG1186: Protein chain release factor B [Magnetospirillum magnetotacticum MS-1] Length = 136 Score = 78.7 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 56/109 (51%), Positives = 77/109 (70%), Gaps = 2/109 (1%) Query: 182 VHRVQRVPATEASGRVHTSAATVAVLPEAAEI-DVDIPLEDIRIDTMRASGSGGQHVNTT 240 +HR+ R+ +++ R HTS A+V V P + +++I D RIDT R+SG+GGQHVNTT Sbjct: 1 MHRLVRISPYDSNARRHTSFASVWVYPVIDDRIEIEIKESDCRIDTYRSSGAGGQHVNTT 60 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 DSAVRITH PTGI+V E+SQH+NR A +LRARLY++E K+ + Sbjct: 61 DSAVRITHNPTGIVVACQQERSQHKNRATAWNMLRARLYELELKKREEK 109 >gi|115634718|ref|XP_787728.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115976393|ref|XP_001185397.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 90 Score = 78.3 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 32/83 (38%), Positives = 50/83 (60%) Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 G+ + E+SQH+NR AM +L+ +Y+ + + R Q+G+G RSE+IRTYN Sbjct: 8 NGLAESQQERSQHKNRSIAMTMLQPHIYNRILADQTSSERSMRSSQVGTGGRSEKIRTYN 67 Query: 311 FSQGRITDHRINLTLYKLEYVLQ 333 + Q RITDHR LT++ + + Sbjct: 68 YQQDRITDHRRGLTVHGVPSAID 90 >gi|302780523|ref|XP_002972036.1| hypothetical protein SELMODRAFT_412495 [Selaginella moellendorffii] gi|300160335|gb|EFJ26953.1| hypothetical protein SELMODRAFT_412495 [Selaginella moellendorffii] Length = 402 Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 57/104 (54%) Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 ++ TT ++ + +P + + ++ + A LY++ER R A RS Sbjct: 142 KKYEKYAQTTHGGLKFSALPPPTPEVDVDIRNDEIKIDTYRAGGAMLYELERSRTAASRS 201 Query: 291 ANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQG 334 ++ QIGS DR ERIRT NF Q R+TDHR+ +T + +E +++G Sbjct: 202 ELQQDQIGSSDRLERIRTCNFPQDRVTDHRVGVTQHSIEQIMEG 245 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 70/142 (49%), Gaps = 9/142 (6%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 ++ + K + +++R A + + E+ D IK+ ++ + + K++E Sbjct: 16 ILRILEKSVISIEDRHACLSKALLETGIASDELIKMNKDLCKLDYSVDMFKALKAKEKEV 75 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L ++ + D E+R LA E+ +E+R+ ++E+ +PKD D + G Sbjct: 76 IGLKELVKESVEDEEMRRLASGELQTATREVRDAQDEVLLERIPKDEADSR--------G 127 Query: 120 TGGSEAALFVGDLFRMYERYAA 141 GG EA++F DLF+ YE+YA Sbjct: 128 AGGDEASIFASDLFKKYEKYAQ 149 >gi|222872913|gb|EEF10044.1| predicted protein [Populus trichocarpa] Length = 245 Score = 77.9 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 6/85 (7%) Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS--ANRKLQIGSGDRSER 305 +PTGI+V +SQH NR A + LR++LY+ E ++ E+ + K +G G + Sbjct: 1 MPTGIVVQCQDGRSQHSNRDVAWQRLRSKLYEHEMQKRMVEQQKLEDTKTDVGWG---HQ 57 Query: 306 IRTYNFSQGRITDHRINLTLYKLEY 330 IR+Y RI D R N+ + + Sbjct: 58 IRSYVLDNSRIKDLRTNVEISATQK 82 >gi|119513510|ref|ZP_01632531.1| peptide chain release factor 2 [Nodularia spumigena CCY9414] gi|119461826|gb|EAW42842.1| peptide chain release factor 2 [Nodularia spumigena CCY9414] Length = 66 Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 2/58 (3%) Query: 291 ANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 R + +IR Y F + + D R N+ + V+ G +D I L Sbjct: 1 EIRGDMVE-ASWGNQIRNYVFHPYQMVKDLRTNVETTAISDVMDGDLDSFIQAYLRQE 57 >gi|302823050|ref|XP_002993180.1| hypothetical protein SELMODRAFT_431302 [Selaginella moellendorffii] gi|300139071|gb|EFJ05820.1| hypothetical protein SELMODRAFT_431302 [Selaginella moellendorffii] Length = 221 Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 2/94 (2%) Query: 252 GIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF 311 V E+SQ +N+++A+ +L+++L + ++ A E R + + + IR Y F Sbjct: 12 TFFVFVKERSQLENKIKAIALLKSKLLVILEEQKAAEIKEIR-GDVVKAEWGQEIRNYVF 70 Query: 312 SQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 R + D R N+ + ++ G ++ ++ L Sbjct: 71 HPYRLVHDLRTNVETSDISGIMDGNVEPLLTAYL 104 >gi|10092253|gb|AAG12666.1|AC027033_1 peptide chain release factor, putative; 62597-62246 [Arabidopsis thaliana] Length = 88 Score = 77.5 bits (189), Expect = 3e-12, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%) Query: 278 YDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYI 336 ++ R+ N + +I G+ +IRTY Q R + D R N + + VL+G + Sbjct: 17 LEMARQTSVNAQHTRSLTEISWGN---QIRTYVLHQYRMVKDLRTNYEVSDPDSVLEGDL 73 Query: 337 DDIINPLL 344 D I+ LL Sbjct: 74 DGFISKLL 81 >gi|302857242|ref|XP_002959826.1| hypothetical protein VOLCADRAFT_101339 [Volvox carteri f. nagariensis] gi|300254224|gb|EFJ39110.1| hypothetical protein VOLCADRAFT_101339 [Volvox carteri f. nagariensis] Length = 194 Score = 76.4 bits (186), Expect = 6e-12, Method: Composition-based stats. Identities = 66/101 (65%), Positives = 80/101 (79%), Gaps = 1/101 (0%) Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 V+ + ESGVHRVQRVP TEA GRVHTS V VLP+A E+DV + ED+RI+TMRASG Sbjct: 94 VYGTLLPESGVHRVQRVPVTEAQGRVHTSTVAVVVLPQADEVDVKLRDEDLRIETMRASG 153 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 +GGQHVN TDSAVRITH+PTG++V +E+SQH NR A+K Sbjct: 154 AGGQHVNVTDSAVRITHVPTGLVVSCQNERSQHLNRAAALK 194 >gi|207109871|ref|ZP_03244033.1| peptide chain release factor 2 [Helicobacter pylori HPKX_438_CA4C1] Length = 130 Score = 74.8 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 46/113 (40%), Positives = 69/113 (61%), Gaps = 1/113 (0%) Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187 + L+RMY R+A R +K E+L D ++ G K + I G + +K ESGVHR+ R Sbjct: 1 WASILYRMYLRWAERRGFKSEILDYQDGEEAGIKGVAFIIKGENAYGYLKNESGVHRLVR 60 Query: 188 VPATEASGRVHTSAATVAVLP-EAAEIDVDIPLEDIRIDTMRASGSGGQHVNT 239 + +A+ + HTS A+V + P +ID++I +D+R D RASG+GGQHVN Sbjct: 61 ISPFDANAKRHTSFASVQISPELDDDIDIEIDEKDVRYDYYRASGAGGQHVNK 113 >gi|325278153|ref|ZP_08143661.1| peptide chain release factor 2 [Pseudomonas sp. TJI-51] gi|324096712|gb|EGB95050.1| peptide chain release factor 2 [Pseudomonas sp. TJI-51] Length = 141 Score = 73.3 bits (178), Expect = 5e-11, Method: Composition-based stats. Identities = 33/145 (22%), Positives = 65/145 (44%), Gaps = 5/145 (3%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 ++ ++ + + QDL + + N + + D+ + + E ++ + Sbjct: 2 LAQVVETLDKLSNGLGDCQDLLDMAVEENDEGAVGDVVTE-----LEGLEENLAQLEFRR 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 + D + L+I+AG+GG+EA + L RMY R+A R + ++ S+ + G K Sbjct: 57 MFSGEMDMNNAYLDIQAGSGGTEAQDWANILLRMYLRWADKRGFDATIIELSEGEVAGIK 116 Query: 162 EIVATISGRGVFSRMKFESGVHRVQ 186 I G F ++ E GVHR+ Sbjct: 117 GATVHIKGEYAFGWLRTEIGVHRLV 141 >gi|328852101|gb|EGG01250.1| hypothetical protein MELLADRAFT_92621 [Melampsora larici-populina 98AG31] Length = 174 Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 70/190 (36%), Positives = 97/190 (51%), Gaps = 29/190 (15%) Query: 151 SSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVL--- 207 S + G +E I G V+ RM++E+GVH VQ VP + + VHTS A V VL Sbjct: 1 MVSGHSMDGLREAPLEIKGEDVYKRMRWEAGVHCVQCVPVMQNTSLVHTSTAAVIVLAFD 60 Query: 208 --PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQN 265 + + + +D+R +TMR+ G GGQHVN T+S VR+TH+P Sbjct: 61 PGNQDRQEEALFEDKDVRTETMRSQGVGGQHVNKTESVVRLTHVPNWN------------ 108 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTL 325 R +LRA L D+ ++ E R LQ+ I F QGR+TDHRI LTL Sbjct: 109 -SRVFMILRAILSDLRNQQKQVEERGLRLLQL--------I--CVF-QGRVTDHRIGLTL 156 Query: 326 YKLEYVLQGY 335 +L YV++G Sbjct: 157 PRLHYVMEGD 166 >gi|71032615|ref|XP_765949.1| peptide chain release factor 1 [Theileria parva strain Muguga] gi|68352906|gb|EAN33666.1| peptide chain release factor 1, putative [Theileria parva] Length = 216 Score = 72.9 bits (177), Expect = 7e-11, Method: Composition-based stats. Identities = 58/136 (42%), Positives = 76/136 (55%), Gaps = 13/136 (9%) Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDV------------DIPLEDI 222 R E GVH+V+RVP TE SGR+H+S ATVAVLP +I DI Sbjct: 45 RFLREGGVHQVKRVPMTEKSGRMHSSTATVAVLPSEMAKGRGTNNFEDVLEAVEINPSDI 104 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 T RASG GGQ+VN ++AV + H PTGI V S E+SQ +N+ A+K LR + + Sbjct: 105 EWKTCRASGPGGQNVNKVETAVSLYHKPTGIKVECSEERSQGKNKELALKKLREEIARIR 164 Query: 282 RKRMANERSANRKLQI 297 + M +E RK Q+ Sbjct: 165 IEEMFSEARVRRKSQV 180 >gi|167948499|ref|ZP_02535573.1| hypothetical protein Epers_18991 [Endoriftia persephone 'Hot96_1+Hot96_2'] gi|110589280|gb|ABG77149.1| hypothetical protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 153 Score = 71.4 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%) Query: 90 IRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149 + E+ + + D + L+I+AG+GG+EA + L RMY R+ +K E+ Sbjct: 2 FEQRIAELEFRRMFSGEMDPSNAFLDIQAGSGGTEAQDWAEMLLRMYLRWGEAHGFKTEL 61 Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209 + +S + G K G F ++ E+GVHR+ R ++ R HTS + L Sbjct: 62 MEASPGEVAGIKSATIRFEGEYAFGWLRTETGVHRLVRKSPFDSGNRRHTSFSASVCLAG 121 Query: 210 AAEIDVD 216 +D D Sbjct: 122 NRRLDRD 128 >gi|261885046|ref|ZP_06009085.1| peptide chain release factor 2 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 83 Score = 70.6 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 4/86 (4%) Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN-FSQGRITDHRINLTLYKL 328 MK L++RLY+ E + +A K +IG G +IR+Y F ++ D R + Sbjct: 1 MKWLKSRLYEFELMKQQEANNAIEKSEIGWG---HQIRSYVLFPYQQVKDTRSGEAYSQT 57 Query: 329 EYVLQGYIDDIINPLLTAHQAKMIGS 354 + +L G I II +L + ++ Sbjct: 58 DAILDGDIKKIIESVLISQKSSANKE 83 >gi|12329992|emb|CAC24560.1| mitochondrial peptide chain release factor [Platichthys flesus] Length = 183 Score = 70.2 bits (170), Expect = 5e-10, Method: Composition-based stats. Identities = 57/183 (31%), Positives = 94/183 (51%), Gaps = 9/183 (4%) Query: 57 QEEQDLHTVIG----DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 ++ +++ +++ + D ++ + + E I +I L ++ L+P D D + Sbjct: 1 RDLEEVRSLLQGSAGAKDEDEQVMQMLKEEEEHISSKILALREDLIKALVPADPLDSSND 60 Query: 113 ILEIRAG--TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +LE+ +G TGG F ++F MY+ +A + W EV + + D GG I+G Sbjct: 61 LLEVVSGRTTGGDICQQFTKEMFDMYQGFAFYKNWDFEVYNYTSADFGGLHHAAVRIAGD 120 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRV---HTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 V+ +K E G HRVQR+P S R+ HT TV +LP+ E DV I +D+RIDT Sbjct: 121 NVYRHLKHEGGTHRVQRIPEVGLSSRMQRIHTGTMTVIILPQPVEFDVHIDPKDLRIDTF 180 Query: 228 RAS 230 RA Sbjct: 181 RAR 183 >gi|15896625|ref|NP_349974.1| protein chain release factor B [Clostridium acetobutylicum ATCC 824] gi|15026468|gb|AAK81314.1|AE007835_3 Protein chain release factor B [Clostridium acetobutylicum ATCC 824] gi|325510788|gb|ADZ22424.1| Protein chain release factor B [Clostridium acetobutylicum EA 2018] Length = 204 Score = 69.8 bits (169), Expect = 6e-10, Method: Composition-based stats. Identities = 61/180 (33%), Positives = 88/180 (48%), Gaps = 4/180 (2%) Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGRGV 172 L+I AGTG E+ FV + ++ R K+EVL + G K + +SG G Sbjct: 3 LQISAGTGPVESCRFVYLFLNLVKKECKYRNIKIEVLDFVPGEKIGTLKSVFLKLSGEGA 62 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 + +G H + + R +AV + E + D+ +DI I+ MR+SG Sbjct: 63 KTYASSITGTHLLIWESEYRKNHRRKNWF--IAVNSFSYETNEDLNDKDIIIEKMRSSGK 120 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T++AVRITH TGI+V +S E+SQ N A L L + +R RS Sbjct: 121 GGQHVNKTETAVRITHKKTGIVVNSSEERSQFANIKLAKARLIIELKKLSDERRKRNRSE 180 >gi|153846265|ref|ZP_01993846.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810] gi|149744945|gb|EDM56287.1| peptide chain release factor 1 [Vibrio parahaemolyticus AQ3810] Length = 116 Score = 69.5 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 28/116 (24%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQ 57 M ++ L R+ E++ + + + D + L++EY+ + + Y Q + Sbjct: 1 MKASILTKLETLVERYEEVQHLLGDPDVIGDQDKFRALSKEYSQLEEVTKCFQAYQQAQD 60 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 + + + D E+R++AQ E+ ++ I L +E+ LLLPKD +DD++C Sbjct: 61 DLAAAEEMAKE--DDEEMREMAQEEIKDAKEAIERLADELQILLLPKDPNDDRNCY 114 >gi|256045469|ref|ZP_05448355.1| peptide chain release factor 1 [Brucella melitensis bv. 1 str. Rev.1] Length = 128 Score = 69.5 bits (168), Expect = 8e-10, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 67/115 (58%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 14 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 73 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILE Sbjct: 74 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILE 128 >gi|213161326|ref|ZP_03347036.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 42 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 R+Y RI D R + + VL G +D I L A Sbjct: 1 RSYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 40 >gi|265991894|ref|ZP_06104451.1| peptide chain release factor [Brucella melitensis bv. 1 str. Rev.1] gi|263002907|gb|EEZ15253.1| peptide chain release factor [Brucella melitensis bv. 1 str. Rev.1] Length = 133 Score = 69.1 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 44/115 (38%), Positives = 67/115 (58%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ L ++ L RF+ IE +M+ +P D Y+KL EY+ + ++ KI + E Sbjct: 19 MIALPQDRMDQLLKRFSMIESQMANNPDSDTYVKLASEYSELQDVVGKIRELSDARMEAS 78 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 DL + D ++D+E+R LA E+ +EK I LE ++ LLLPKD DDK+ ILE Sbjct: 79 DLAAMRDDASTDAEMRALAVEELPEVEKRIAVLEQDVQILLLPKDAADDKNAILE 133 >gi|239982310|ref|ZP_04704834.1| peptide chain release factor 1 [Streptomyces albus J1074] gi|291454154|ref|ZP_06593544.1| peptide chain release factor 1 [Streptomyces albus J1074] gi|291357103|gb|EFE84005.1| peptide chain release factor 1 [Streptomyces albus J1074] Length = 121 Score = 67.5 bits (163), Expect = 3e-09, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 10/126 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + + +L A+IE R+++ KL + YA ++PI+ + Q ++ + Sbjct: 3 EAVEELIGEHADIEKRLADPAVHADQAGARKLNKRYAELTPIVGTYRSWKQTGEDIETAR 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + D EV +E EL ++ LL+P+D DDK ILEI+AG GG Sbjct: 63 ELAADDPD-------FAAEVKELEAAREELTEKLRLLLVPRDPSDDKDVILEIKAGAGGD 115 Query: 124 EAALFV 129 E+ALF Sbjct: 116 ESALFA 121 >gi|88607060|ref|YP_505064.1| peptide chain release factor 2, truncation [Anaplasma phagocytophilum HZ] gi|88598123|gb|ABD43593.1| peptide chain release factor 2, truncated [Anaplasma phagocytophilum HZ] Length = 72 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 1/38 (2%) Query: 309 YNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 Y R + D R ++ V+ G +D I L Sbjct: 23 YKMHPYRMVKDLRTGHETGNVDAVMNGDLDAFITAALM 60 >gi|50122538|ref|YP_051705.1| peptide chain release factor-like protein [Pectobacterium atrosepticum SCRI1043] gi|49613064|emb|CAG76515.1| putative peptide chain release factor [Pectobacterium atrosepticum SCRI1043] Length = 207 Score = 66.4 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E L R AA + + E++ + G + + ++G Sbjct: 2 ILLQLSAAQGPDECMLATAKALHALTRDAARQGIECEIIETEVGKRAGTLRSALVLLNGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + G VA + D +IR +T ++S Sbjct: 62 QAEPLAASWCGTLQWTCNSPWRKGGGRKNWFIGVARFHQEQAFADD----EIRFETTKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A ++ RL +++++ A R Sbjct: 118 GPGGQHVNKTESAVRATHVASGITVKVQSERSQHANKRLACYLIAYRLEALQQQQHAELR 177 Query: 290 SANR 293 + R Sbjct: 178 AQRR 181 >gi|289806047|ref|ZP_06536676.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 41 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 308 TYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +Y RI D R + + VL G +D I L A Sbjct: 1 SYVLDDSRIKDLRTGVETRNTQAVLDGSLDQFIEASLKA 39 >gi|315497766|ref|YP_004086570.1| peptide chain release factor h [Asticcacaulis excentricus CB 48] gi|315415778|gb|ADU12419.1| peptide chain release factor H [Asticcacaulis excentricus CB 48] Length = 208 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 59/203 (29%), Positives = 91/203 (44%), Gaps = 6/203 (2%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 IL + +G G E V L R + R A EV++S + + +++ Sbjct: 1 MTEIILHLTSGKGPDECCWVVAQLSRAFTREALKDGVACEVINSGEELPASL---LMSVT 57 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 G + + G + + V + P + D+ EDI TMR Sbjct: 58 GDQAQAFVSARVGTIQWIGDSPFRPRHKRRNWFVGVNIAPSPDAMP-DLRDEDIVFQTMR 116 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG GGQHVN TDSAVR TH TG++V ++SQH NR A + L A L D +R++ ++ Sbjct: 117 ASGPGGQHVNKTDSAVRATHRSTGLVVTAQEQRSQHANRKLARQKL-AVLLDEQRQKASD 175 Query: 288 ERSANRKLQIGSGDRSERIRTYN 310 + + +R + +RTY Sbjct: 176 SARQVQWSAHQNLERGKSVRTYT 198 >gi|218297204|ref|ZP_03497866.1| PCRF domain protein [Thermus aquaticus Y51MC23] gi|218242481|gb|EED09020.1| PCRF domain protein [Thermus aquaticus Y51MC23] Length = 148 Score = 66.4 bits (160), Expect = 7e-09, Method: Composition-based stats. Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 9/150 (6%) Query: 35 LTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELE 94 +++E A + + + + +L + ++ +L + L Sbjct: 1 MSQEAARLRRTVETFRSLEGDLEGLMELWEELPAEEREALKPELLEAAKKLEVLYHETL- 59 Query: 95 NEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD 154 +K+ IL I+ G GG+EA + L RMY R+A + ++VEV+ Sbjct: 60 --------LNFPHAEKNAILTIQPGAGGTEACDWAEMLLRMYTRFAERQGFEVEVVDLRP 111 Query: 155 NDDGGYKEIVATISGRGVFSRMKFESGVHR 184 + G + G + + E+GVHR Sbjct: 112 GAEAGVDYAQILVKGENAYGLLSAEAGVHR 141 >gi|207111206|ref|ZP_03245368.1| peptide chain release factor 2 [Helicobacter pylori HPKX_438_CA4C1] Length = 55 Score = 66.0 bits (159), Expect = 8e-09, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Query: 292 NRKLQIGSGDRSERIRTYNFSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 +K +IG G +IR+Y + + + D R N+ +E +L G ID I+ +L A Sbjct: 1 KKKDEIGWG---HQIRSYVLAPYQQVKDARSNIAYSNVEAILDGDIDAILEGVLIA 53 >gi|329848554|ref|ZP_08263582.1| putative peptide chain release factor H [Asticcacaulis biprosthecum C19] gi|328843617|gb|EGF93186.1| putative peptide chain release factor H [Asticcacaulis biprosthecum C19] Length = 208 Score = 64.4 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 88/213 (41%), Gaps = 12/213 (5%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 IL I +G G E V L + + R A + +VL + + ++ ++S Sbjct: 1 MTEIILHISSGKGPDECCWVVTKLAQAFTREGAEQGVTCDVLDA---GEALPASLLLSVS 57 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 G + ++ G + + VA L + + D+ DI TMR Sbjct: 58 GEAAPAFVRERIGTIQWVGDSPFRPLHKRRNWFVGVA-LAPSPQSVPDLRESDITFSTMR 116 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 ASG GGQHVN TDSAVR H PTG++ ++SQH NR A L L +R Sbjct: 117 ASGPGGQHVNKTDSAVRAVHRPTGLVATAQEQRSQHANRKLATLKLALML----EERRVE 172 Query: 288 ERSANRKLQIGSG---DRSERIRTYNFSQGRIT 317 R+ Q + +R +RTY ++ Sbjct: 173 AGGQARRDQWSAHQALERGNPVRTYIGPHFKLK 205 >gi|266622715|ref|ZP_06115650.1| peptide chain release factor 2 [Clostridium hathewayi DSM 13479] gi|288865552|gb|EFC97850.1| peptide chain release factor 2 [Clostridium hathewayi DSM 13479] Length = 51 Score = 63.7 bits (153), Expect = 5e-08, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 312 SQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346 + DHR N + VL G +D I L Sbjct: 3 PYTMVKDHRTNAETGNVNSVLDGALDLFIYAYLRW 37 >gi|557260|emb|CAA57573.1| protein release factor 1 [Pseudomonas aeruginosa PAO1] Length = 96 Score = 62.9 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 34/75 (45%), Gaps = 3/75 (4%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQ 57 M K++ L +R+ E+ + ++ + + + EYA + P+I + Y + + Sbjct: 1 MKASLLKKLDVLSDRYEELTALLGDAEVISDQDPFRAYSREYAEVEPVILRFRDYRKVQA 60 Query: 58 EEQDLHTVIGDHNSD 72 + + ++ D + + Sbjct: 61 DLEGAQALLKDSDPE 75 >gi|241205972|ref|YP_002977068.1| peptide chain release factor H [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859862|gb|ACS57529.1| peptide chain release factor H [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 204 Score = 62.9 bits (151), Expect = 8e-08, Method: Composition-based stats. Identities = 52/177 (29%), Positives = 79/177 (44%), Gaps = 2/177 (1%) Query: 116 IRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSR 175 I AG G E + + L + ER A E D G K + +++G Sbjct: 8 ITAGNGPVECRMALAALLGILEREAVRLGCSFETNLGPMPDQHGAKSAIVSLNGFEAEQI 67 Query: 176 MKFESGVHRVQRVPATEASGRVHTSAATVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 G R + +V + + +V I D+R +T+RA G GG Sbjct: 68 ANDYCGTIRFTFKSQVRPGHKRQNWYVSVQRIDTKPEGGEVTIDPADLRFETLRAGGPGG 127 Query: 235 QHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 QH NTTDSAVR+ H PTG++ E+SQH+N+ A++ L A L +E ++ +S Sbjct: 128 QHQNTTDSAVRVLHRPTGLVATARDERSQHRNKALALRRLEAMLRHLEVEKQEAAKS 184 >gi|261822834|ref|YP_003260940.1| peptide chain release factor-like protein [Pectobacterium wasabiae WPP163] gi|261606847|gb|ACX89333.1| peptide chain release factor H [Pectobacterium wasabiae WPP163] Length = 207 Score = 62.5 bits (150), Expect = 9e-08, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E L + R AA + + E++ + G + + ++G Sbjct: 2 ILLQLSAAQGPDECMLATAKALQALIRDAARQGIESEIIETEAGKRAGTLRSALVLLNGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + G +A + +IR +T ++S Sbjct: 62 QAEPLAASWCGTLQWTCNSPWRKGGGRKNWFIGIA----RFHQERAFADNEIRFETTKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A ++ RL +++++ A R Sbjct: 118 GPGGQHVNKTESAVRATHVASGITVKVQSERSQHANKRLACYLIAYRLEALQQQQHAELR 177 Query: 290 SANR 293 + R Sbjct: 178 AQRR 181 >gi|222100136|ref|YP_002534704.1| Peptide chain release factor 2 [Thermotoga neapolitana DSM 4359] gi|221572526|gb|ACM23338.1| Peptide chain release factor 2 [Thermotoga neapolitana DSM 4359] Length = 160 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 49/135 (36%), Gaps = 4/135 (2%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ E+E ++S+ D K E + + + + + +DL I Sbjct: 29 EEVNRELKELEKKLSDPSVWDDQKKAREYTQKLKRLKNISEDLKRVRSLFEDLEVAIELS 88 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 D ++ + + V +EK +++LE ++ D + L + G GG+E+ + Sbjct: 89 EEDMDMVNQVEEIVQDLEKAVKKLEL----EIILNGKYDPNNAYLSVHPGAGGTESQDWA 144 Query: 130 GDLFRMYERYAALRK 144 L Sbjct: 145 QMLLEDVHEMGRKEG 159 >gi|72012906|ref|XP_786280.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115976395|ref|XP_001185479.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 101 Score = 62.5 bits (150), Expect = 1e-07, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%) Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT-------YNFSQGRITDHRIN 322 M +L+ R+Y+ + + R Q+ G RSE+IRT YN+ Q RITDHR Sbjct: 1 MTMLQPRIYNRILADQTSSERSMRCSQVSRGGRSEKIRTTNPNLYNYNYQQDRITDHRRG 60 Query: 323 LTLYKLEYVLQGY--IDDIINPL 343 T++ + L G +D+++ Sbjct: 61 RTVHGVPAYLLGSELLDEMVTSY 83 >gi|260792422|ref|XP_002591214.1| hypothetical protein BRAFLDRAFT_247522 [Branchiostoma floridae] gi|229276417|gb|EEN47225.1| hypothetical protein BRAFLDRAFT_247522 [Branchiostoma floridae] Length = 99 Score = 62.1 bits (149), Expect = 1e-07, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 56/86 (65%), Gaps = 3/86 (3%) Query: 270 MKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLE 329 M ++ARLY ++ + +++ R+ Q+G+ RSE+IRTYNF+Q R+TDHR + ++ L+ Sbjct: 1 MTTIQARLYQMKLDQQRSQQQLARQQQMGTAARSEKIRTYNFTQDRVTDHRAGVNMFNLQ 60 Query: 330 YVLQGY--IDDIINPLLTA-HQAKMI 352 L G +D++I+ + H+ +++ Sbjct: 61 DFLLGGDRLDEMIHTVQQHLHREEVL 86 >gi|108763642|ref|YP_629741.1| ClpA/B family protein [Myxococcus xanthus DK 1622] gi|108467522|gb|ABF92707.1| ClpA/B family protein [Myxococcus xanthus DK 1622] Length = 966 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 46/336 (13%), Positives = 111/336 (33%), Gaps = 42/336 (12%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L+ R AE+ D + E A + ++++ ++ + ++ + Sbjct: 661 QLEQRRAELLAETQAPNLWDDPTRAAEVIRAFRTVEAQLNELERLEAAGLFARRLVREAK 720 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 + ++ +++ L T D +++I A A +V Sbjct: 721 N-----EVQLGSAARQVEDVAREVQMAEALHASGATTQDTEALVDICASDSVEAQATWVQ 775 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 +L MY +A R ++ ++ ++ +V I+G G + + E+G+HR Sbjct: 776 ELATMYLGWAQRRGYEAVAVAEAEEP----SRVVVRIAGPGAYGFLAGEAGMHRRL---- 827 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 D + + R + + + R Sbjct: 828 ------------------------EDEKRQRAYVRVHRGGSLSEEELAYLEVQGRPMKSH 863 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 G + +++ + + + E + + + ++ G G ++ R Y Sbjct: 864 EGAYL-QRVRTEVTVKDESSGRVLTLTGATELDELKDIAA---RVVYGQGSNTDEARRYY 919 Query: 311 FSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +G R+ D R +++ VL+G +D I +T Sbjct: 920 LGRGARVEDPRTGAGTPRVKDVLRGELDVFIAAWIT 955 >gi|167933019|ref|ZP_02520106.1| Protein chain release factor B [candidate division TM7 single-cell isolate TM7b] Length = 106 Score = 61.4 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 4/93 (4%) Query: 234 GQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 GQ VNTTDSAVRITH+PTGI V +E+SQ QN+ A+K+LR++L ++ ++ A + Sbjct: 1 GQGVNTTDSAVRITHLPTGITVAIQNERSQIQNKETALKILRSKLAQIQTEQHAETINDL 60 Query: 293 RKLQIGSGDRSERIRTYNFSQG-RITDHRINLT 324 R + S + +IR Y I D R Sbjct: 61 RAGE--SANWGSQIRNYILHPYTLIKDTRTKYE 91 >gi|227325964|ref|ZP_03829988.1| peptide chain release factor-like protein [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 207 Score = 61.0 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E L + R AA + + EV+ + G + + ++G Sbjct: 2 ILLQLSAAQGPDECMLATAKALQALTRDAARQGIECEVIETEAGKRSGTLRSALVLLNGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + G +A + +IR + ++S Sbjct: 62 QAEPLAASWCGTLQWTCNSPWRKGGGRKNWFIGIA----RFHQEQAFADNEIRFEATKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A ++ RL +++++ A R Sbjct: 118 GPGGQHVNKTESAVRATHVASGITVKVQSERSQHANKRLACYLIAYRLEALQQQQHAELR 177 Query: 290 SANR 293 + R Sbjct: 178 AQRR 181 >gi|307943084|ref|ZP_07658429.1| putative peptide chain release factor H [Roseibium sp. TrichSKD4] gi|307773880|gb|EFO33096.1| putative peptide chain release factor H [Roseibium sp. TrichSKD4] Length = 217 Score = 61.0 bits (146), Expect = 3e-07, Method: Composition-based stats. Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 1/129 (0%) Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRI 224 +SG+ K +G R + V L + + D++ Sbjct: 65 LRLSGKDASEIAKRWTGTIRWTCQSPFRPHHKRKNWFVGVFALATERDQTETLSPSDLKF 124 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERK 283 +T RA G GGQH NTTDSAVR+TH+PTG +V E+SQH+NR A+ L RLY + + Sbjct: 125 ETFRAGGPGGQHQNTTDSAVRLTHLPTGLSVVARDERSQHRNRAAALNRLHDRLYLLAAE 184 Query: 284 RMANERSAN 292 A +S+ Sbjct: 185 ADAGAKSSE 193 >gi|71027353|ref|XP_763320.1| peptide chain release factor 1 [Theileria parva strain Muguga] gi|68350273|gb|EAN31037.1| peptide chain release factor 1, putative [Theileria parva] Length = 299 Score = 60.6 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 104/232 (44%), Gaps = 29/232 (12%) Query: 28 SVDAYIKLTEEYAAISPIISKISIY------DQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 ++ + T+E S I+S + D++ + D N + Sbjct: 48 FIEEPNESTKELVD-SEILSLYHQIYPQILQHSLGENLTDMNVNLRDMNE--------NL 98 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141 + + ++ + + T + +L++ G GG E+ F +L+ MY Sbjct: 99 RDEFVNLRRKLVDMQNSLFSGSLHTLNYHKILLQVLQGVGGEESGKFAAELYDMYANICN 158 Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201 L K K T+ R ++E GVHRVQRVP S R+ TS+ Sbjct: 159 LNNLKH------------IKHPNNTLEIFQGLDRFRYEFGVHRVQRVPF--NSRRIQTSS 204 Query: 202 ATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI 253 A V V+P D++I D+ ++TMR+SGSGGQ VN +++AVRITHIPTGI Sbjct: 205 AVVTVVPHFNVEDINIKSSDLMVETMRSSGSGGQSVNKSETAVRITHIPTGI 256 >gi|325267596|ref|ZP_08134248.1| peptide chain release factor RF2 [Kingella denitrificans ATCC 33394] gi|324980946|gb|EGC16606.1| peptide chain release factor RF2 [Kingella denitrificans ATCC 33394] Length = 202 Score = 60.6 bits (145), Expect = 4e-07, Method: Composition-based stats. Identities = 44/196 (22%), Positives = 69/196 (35%), Gaps = 4/196 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 L++ G +E F R R A VE+LS + + G + V +SG Sbjct: 2 IYLQLSTGQAPAECQYFARFALRQMLREAEAAGLDVEILSETPSKH-GLRSAVVAVSGSL 60 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + + G + + V + ++R +T RA G Sbjct: 61 QDNFAQRWLGTLQWVCASPFRPNHARKNWFVAV---SRLPDFPALPEEGEVRFETCRAGG 117 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVR H TGI V + + L A + +A Sbjct: 118 KGGQHVNKTESAVRAVHTATGISVRVESERSQHANKKRALELLAVKLAAQHAEQMGRHAA 177 Query: 292 NRKLQIGSGDRSERIR 307 + Q+ +R +R Sbjct: 178 DAHAQLYQLERGNAVR 193 >gi|227112372|ref|ZP_03826028.1| peptide chain release factor-like protein [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 207 Score = 60.2 bits (144), Expect = 5e-07, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 76/184 (41%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E L R AA + E++ + G + + ++G Sbjct: 2 ILLQLSAAQGPDECMLATTKALHALTRDAARQGVNCEIIETEAGKRAGTLRSALVLLNGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + G VA + +IR + ++S Sbjct: 62 QAEPLAANWCGTLQWTCNSPWRKGGGRKNWFIGVARFHQEQA----FADHEIRFEATKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A ++ RL +++++ A R Sbjct: 118 GPGGQHVNKTESAVRATHVASGITVKVQSERSQHANKRLACYLIAYRLEALQQQQHAELR 177 Query: 290 SANR 293 R Sbjct: 178 PQRR 181 >gi|326525162|dbj|BAK07851.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 149 Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 5/150 (3%) Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS- 258 S + +L ++ + D+ I + + G N VR+ HIP+G+ SS Sbjct: 1 STLPLKILALTRPVNFHLDDNDLEISPLPSKCENGDRRNGA--TVRVQHIPSGVTAESSG 58 Query: 259 EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNF-SQGRIT 317 E+S N+L+A+ L+A+L + R+ + K + G E R Y Q + Sbjct: 59 ERSYFANKLKAVSRLKAKLLIITRELRVPDPKMMEKQAVEEGCNRE-TRRYTLGPQELVH 117 Query: 318 DHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 D + L L VL+G I+ I + + Sbjct: 118 DLNTGIQLSDLNSVLEGDIEPFIRGRIVSR 147 >gi|254472541|ref|ZP_05085940.1| putative peptide chain release factor H [Pseudovibrio sp. JE062] gi|211958005|gb|EEA93206.1| putative peptide chain release factor H [Pseudovibrio sp. JE062] Length = 212 Score = 59.8 bits (143), Expect = 6e-07, Method: Composition-based stats. Identities = 50/189 (26%), Positives = 83/189 (43%), Gaps = 1/189 (0%) Query: 106 TDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVA 165 + + L + +G G +E L + E+ A + Sbjct: 1 MTEKTTVRLLLSSGDGPAECRLALCHSVAAMEKTAKKLGLSFASDPERSDLSANVASAEV 60 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 T++G G + K G + + + V LP +A + ED+R + Sbjct: 61 TLAGEGAKTFAKAWCGTIKWTCQSPFRPNHKRQNWFIGVYELPVSAAEAGEFNAEDLRFE 120 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T+RA G GGQH N T+SAVR+TH+PTG +V E+SQH+N+ A++ L+ +L + + Sbjct: 121 TLRAGGPGGQHQNKTESAVRVTHVPTGLSVVARDERSQHRNKQIALQRLQEKLSGLSAEE 180 Query: 285 MANERSANR 293 A R + R Sbjct: 181 GARLRKSER 189 >gi|207111372|ref|ZP_03245534.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_CA4C1] Length = 51 Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 26/50 (52%), Positives = 38/50 (76%) Query: 271 KVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYNFSQGRITDHR 320 K+L+ARLY+ + + + +RK Q+GSGDRSERIRTYN+ Q R+++HR Sbjct: 2 KILKARLYEKQIEEQQLANAKDRKEQVGSGDRSERIRTYNYPQNRLSEHR 51 >gi|315305718|ref|ZP_07875316.1| peptide chain release factor 1 [Listeria ivanovii FSL F6-596] gi|313625914|gb|EFR95448.1| peptide chain release factor 1 [Listeria ivanovii FSL F6-596] Length = 81 Score = 59.4 bits (142), Expect = 7e-07, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 30/74 (40%), Gaps = 3/74 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ +++R+ E+ +S+ V + L++E + I+ + Y + ++ Sbjct: 3 DRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITATVETYREYKNVNAQIEETK 62 Query: 64 TVIGDHNSDSEIRD 77 ++ + D Sbjct: 63 ELLSEKLDDDMREM 76 >gi|218682457|ref|ZP_03530058.1| peptide chain release factor-like protein [Rhizobium etli CIAT 894] Length = 186 Score = 59.4 bits (142), Expect = 8e-07, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 69/163 (42%), Gaps = 2/163 (1%) Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189 L + ER A E D G K V ++ G G R Sbjct: 4 SALLDIIEREAVGLGCSFEKSLGPMPDRHGAKSAVVSLDGLEAEGIASSYCGTIRFTFKS 63 Query: 190 ATEASGRVHTSAATVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 + V + V I D+R +T+RA G GGQH NTTDSAVRI H Sbjct: 64 PARPGHKRQNWYVAVQRIDAGTEGGKVTIDPADLRFETLRAGGPGGQHQNTTDSAVRILH 123 Query: 249 IPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 PTG+MV E+SQH+N+ A++ L A L +E ++ +S Sbjct: 124 RPTGLMVRARDERSQHRNKALALRRLEAMLRHIEVEKQEAAKS 166 >gi|261379932|ref|ZP_05984505.1| putative peptide chain release factor H [Neisseria subflava NJ9703] gi|284797642|gb|EFC52989.1| putative peptide chain release factor H [Neisseria subflava NJ9703] Length = 212 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 71/206 (34%), Gaps = 1/206 (0%) Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 + L+I G +E +F + A + E+++ + D G Sbjct: 1 MKQNTPVIYLQISTAQGPAECRIFARFVLGKLLAQAQAKGIDAELVTET-ADKHGILSAT 59 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRI 224 + G+ S + G + V LP+ ++ I Sbjct: 60 LKLEGQKAESLAQTWQGTLQWICPSPVRPKHPRKNWYIGVFRLPDMPQMYEMPSENGIEF 119 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ G GGQHVN T+SAVR TH +GI V + + +L A+ Sbjct: 120 QTCRSGGKGGQHVNKTESAVRATHKESGISVRVESERSQHANKKLAVMLLAQKLAEHHAG 179 Query: 285 MANERSANRKLQIGSGDRSERIRTYN 310 A + + Q+ +R RT+ Sbjct: 180 QAGSFAQEQHAQLYQVERGNPKRTFV 205 >gi|319637886|ref|ZP_07992652.1| peptide chain release factor H [Neisseria mucosa C102] gi|317401041|gb|EFV81696.1| peptide chain release factor H [Neisseria mucosa C102] Length = 206 Score = 59.1 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 69/199 (34%), Gaps = 1/199 (0%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 L+I G +E +F + A + E+++ + D G + G+ Sbjct: 2 IYLQISTAQGPAECRIFARFVLGKLLAEAQAKGIDAELVTET-ADKHGILSATLKLEGQK 60 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 S + G + V LP+ + I T R+ G Sbjct: 61 AESLAQTWQGTLQWICPSPVRPKHPRKNWYIGVFRLPDMPQTYEMPSENGIEFQTCRSGG 120 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T+SAVR TH +GI V + + +L A+ A + Sbjct: 121 KGGQHVNKTESAVRATHKESGISVRVESERSQHANKKLAVMLLAQKLAEHHAGQAGSFAQ 180 Query: 292 NRKLQIGSGDRSERIRTYN 310 + Q+ +R RT+ Sbjct: 181 EQHAQLYQVERGNPKRTFV 199 >gi|218670324|ref|ZP_03519995.1| peptide chain release factor-like protein [Rhizobium etli GR56] Length = 175 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 46/155 (29%), Positives = 63/155 (40%), Gaps = 2/155 (1%) Query: 138 RYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRV 197 R A + D G K + + G G R + Sbjct: 1 REAIGLGCTFDKSLGPMPDRHGAKSAIVNLDGLHADRIAGGYCGKIRFTFESPVRPGHKR 60 Query: 198 HTSAATVA-VLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV- 255 V + V I D R T+RA G GGQH NTTDSAVR+ H PTG++V Sbjct: 61 QNWYVAVQRIQAGPEGGQVTINPADQRFQTLRAGGPGGQHQNTTDSAVRVLHRPTGLVVT 120 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 E+SQH+N+ A++ L A L VE ++ +S Sbjct: 121 ARDERSQHRNKALALRRLEAMLRQVEAEKQEAAKS 155 >gi|330720433|gb|EGG98747.1| Peptide chain release factor 1 [gamma proteobacterium IMCC2047] Length = 44 Score = 58.7 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 20/40 (50%), Positives = 29/40 (72%) Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 TDHRINLTLYKL +++G +D +I L+ HQA+ + + S Sbjct: 2 TDHRINLTLYKLPEIMEGDMDSVIQALVNEHQAEQLAALS 41 >gi|213419088|ref|ZP_03352154.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 118 Score = 58.3 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 31/115 (26%), Positives = 64/115 (55%), Gaps = 7/115 (6%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 8 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++ D E+R++AQ E+ +++ +LE ++ LLLPKD DD+++ LE+RAG Sbjct: 68 ML----DDPEMREMAQEELREAKEKSEQLEQQLQVLLLPKDPDDERNAFLEVRAG 118 >gi|225076746|ref|ZP_03719945.1| hypothetical protein NEIFLAOT_01797 [Neisseria flavescens NRL30031/H210] gi|224951914|gb|EEG33123.1| hypothetical protein NEIFLAOT_01797 [Neisseria flavescens NRL30031/H210] Length = 212 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 70/206 (33%), Gaps = 1/206 (0%) Query: 105 DTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV 164 L+I G +E +F + A ++ E+++ + D G Sbjct: 1 MKQHTPVIYLQISTAQGPAECRIFARFVLGKLLAEAQVKGIDAELVTET-ADKHGILSAT 59 Query: 165 ATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRI 224 + G+ S + G + V LP+ + I Sbjct: 60 LKLEGQKTESLAQTWQGTLQWICPSPIRPKHPRKNWYIGVFRLPDMPQRYEMPSENGIEF 119 Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T R+ G GGQHVN T+SAVR TH +GI V + + +L A+ Sbjct: 120 QTCRSGGKGGQHVNKTESAVRATHKESGISVRVESERSQHANKKLAVMLLAQKLAEHHAG 179 Query: 285 MANERSANRKLQIGSGDRSERIRTYN 310 A + + Q+ +R RT+ Sbjct: 180 QAGNFAQEQHAQLYQVERGNPKRTFV 205 >gi|162455289|ref|YP_001617656.1| putative peptide chain release factor homolog protein [Sorangium cellulosum 'So ce 56'] gi|161165871|emb|CAN97176.1| putative peptide chain release factor homolog protein [Sorangium cellulosum 'So ce 56'] Length = 222 Score = 57.9 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 61/208 (29%), Positives = 87/208 (41%), Gaps = 10/208 (4%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 ++I AG G E FV L E R V ++ ++D V + Sbjct: 1 MSRSWVQISAGRGPIEVRRFVARLAERMEALCQERGLAVVDVTLHGDEDAPA--SVEILV 58 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAV------LPEAAEIDVDIPLEDI 222 ++ E G H + A A VA+ A V + L ++ Sbjct: 59 EGDARRCLEGELGTHALVERSAARGKAARKRWFAGVAIHAAGADAGAGAGEGVGVDLREL 118 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 I RASG GGQHVN T SAVRI H P+GI V + E+SQ N R ++ + RL + Sbjct: 119 EISACRASGPGGQHVNKTLSAVRIHHRPSGITVRVADERSQRANVRRGVERIAERLAERA 178 Query: 282 RKRMANERSANRKLQIGSGDRSERIRTY 309 +R+A +A R + R E +RTY Sbjct: 179 ARRVAEGEAA-RWSEHDRIVRGEPVRTY 205 >gi|84999208|ref|XP_954325.1| peptide chain release factor 1, mitochondrial precursor [Theileria annulata] gi|65305323|emb|CAI73648.1| peptide chain release factor 1, mitochondrial precursor, putative [Theileria annulata] Length = 194 Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 44/104 (42%), Positives = 56/104 (53%), Gaps = 12/104 (11%) Query: 175 RMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP------------LEDI 222 R E GVH+V+RVP TE SGR+H+S ATVAVLP D+ DI Sbjct: 72 RFLREGGVHQVKRVPITEKSGRMHSSTATVAVLPSDMVKGNDMNNFDKLVEEVELNPSDI 131 Query: 223 RIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNR 266 T RASG GGQ+VN +++V + H PTGI + SE+ Sbjct: 132 EWKTCRASGPGGQNVNKVETSVSLYHKPTGIKIECSEERYRVTE 175 >gi|69249982|ref|ZP_00605073.1| PCRF [Enterococcus faecium DO] gi|68194043|gb|EAN08594.1| PCRF [Enterococcus faecium DO] Length = 139 Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 49/139 (35%), Gaps = 8/139 (5%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQ---KKQEEQDLHTVIGDHNSDSEIRDLA 79 M+E D + + + + + +E + + ++ + + + Sbjct: 1 MAEPGFWDDSEAAQKVISENNANKETYDQFHSLAEELEEIELMVEMLQEEPDAAMQEEAE 60 Query: 80 QIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERY 139 + E +L D + I+E+ G GG+E+ + L RMY R+ Sbjct: 61 -----TRINALDEKMKTYELSMLLDGPYDRNNAIVELHPGAGGTESQDWGSMLLRMYTRW 115 Query: 140 AALRKWKVEVLSSSDNDDG 158 A ++VE L + G Sbjct: 116 AEQHGYQVETLDYQKSQXG 134 >gi|55958422|emb|CAI16617.1| mitochondrial translational release factor 1 [Homo sapiens] Length = 226 Score = 57.5 bits (137), Expect = 3e-06, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 76/151 (50%), Gaps = 5/151 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHN--SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG--T 120 + N + ++++LA E I+++I L NE+ L+PK+ D ILE+ AG T Sbjct: 136 MCKSLNKQDEKQLQELALEERQTIDQKINMLYNELFQSLVPKEKYDKNDVILEVTAGRTT 195 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLS 151 GG F ++F MY+ Y+ + W+ E+L+ Sbjct: 196 GGDICQQFTREIFDMYQNYSCYKHWQFELLN 226 >gi|323172436|gb|EFZ58073.1| peptide chain release factor 1 domain protein [Escherichia coli LT-68] Length = 145 Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 13/111 (11%), Positives = 38/111 (34%), Gaps = 3/111 (2%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 ++ D +D + +L + E Sbjct: 68 MLDDPEMREMAQDELREAKEKASNWNSNYRFCYCQKILMTNVTPSSKSEPE 118 >gi|46203521|ref|ZP_00208999.1| COG1186: Protein chain release factor B [Magnetospirillum magnetotacticum MS-1] Length = 51 Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%) Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLTAH 347 + + D R + VL G +D + L Sbjct: 2 LQPYQLVKDLRTGTQSTDPDEVLDGDLDPFMEASLAQR 39 >gi|307265646|ref|ZP_07547199.1| peptide chain release factor 1 [Thermoanaerobacter wiegelii Rt8.B1] gi|306919290|gb|EFN49511.1| peptide chain release factor 1 [Thermoanaerobacter wiegelii Rt8.B1] Length = 90 Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 35/69 (50%), Gaps = 3/69 (4%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ E+ ++S+ + + + K +E+AAI I+ K Y + ++ + Sbjct: 1 MIDKLQAIEDRYVELSQKISDPNIISNVNEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60 Query: 62 LHTVIGDHN 70 ++ ++ Sbjct: 61 TKELLSSND 69 >gi|317491073|ref|ZP_07949509.1| RF-1 domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920620|gb|EFV41943.1| RF-1 domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 205 Score = 56.7 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 44/197 (22%), Positives = 76/197 (38%), Gaps = 5/197 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+I + G E AL V + ++ AA KV V G V Sbjct: 2 ILLQISSAQGPDECALAVALALKQLQKEAAALGVKVTVAEQEPARRAGTLRSVLLSLDGD 61 Query: 172 VFSRMKFESG-VHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + VA + + +I+ +++++S Sbjct: 62 AAEHISNTWCGTLQWTCESPWRGGNGRKNWFIGVA----RYCFEDVVIEGEIKFESLKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN T+SA+R TH+ +GI+V + R K+L A + +++ M +E Sbjct: 118 GPGGQHVNKTESAIRATHLASGIVVKVQTERSQHANKRLAKLLIAHKLEQQQQNMQSEIK 177 Query: 291 ANRKLQIGSGDRSERIR 307 A R++ R +R Sbjct: 178 AQRRMFHHQITRGNPVR 194 >gi|253689801|ref|YP_003018991.1| peptide chain release factor H [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756379|gb|ACT14455.1| peptide chain release factor H [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 207 Score = 56.4 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 80/184 (43%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E L + + AA + + E++ + + G + + ++G Sbjct: 2 ILLQLSAAQGPDECMLATAKALQALIQDAARQGIECEIIETEEGKRSGTLRSALVLLNGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + G VA + +IR + ++S Sbjct: 62 RTEPLAASWCGTLQWTCNSPWRKGGGRKNWFIGVA----RFHQEQAFADNEIRFEATKSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A ++ RL +++++ A R Sbjct: 118 GPGGQHVNKTESAVRATHVASGITVKVQSERSQHANKRLACYLIAYRLKALQQQQHAELR 177 Query: 290 SANR 293 + R Sbjct: 178 AQRR 181 >gi|213026980|ref|ZP_03341427.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 102 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 8 QICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ + D + L+ EYA +S + + + Q + + + Sbjct: 13 KLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQLSDVSRCFTDWQQVQDDIETAQM 72 Query: 65 VIGDHNSDSEIRD 77 ++ D ++ Sbjct: 73 MLDDPEMREMAQE 85 >gi|312891971|ref|ZP_07751474.1| peptide chain release factor H [Mucilaginibacter paludis DSM 18603] gi|311295602|gb|EFQ72768.1| peptide chain release factor H [Mucilaginibacter paludis DSM 18603] Length = 205 Score = 56.0 bits (133), Expect = 8e-06, Method: Composition-based stats. Identities = 41/186 (22%), Positives = 82/186 (44%), Gaps = 4/186 (2%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + +++I +G G +E V + R+ + A ++VL + + D G ++ Sbjct: 1 MEKMMIQITSGKGPAECCRVVACVQRLMLKQAKQFGVDIQVLENREADLSGTFLSATMMA 60 Query: 169 GRGVFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 + E G R + VA + +D++++T Sbjct: 61 QGMQLEVFRREWEGTIRWIAQSPYRRYHQRKNWFVGVAFFDIKQLMQ--WNPKDVKLETT 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+SG GGQHVN ++AVR TH+P+GI V +SQ +N+ + L A++ + +++ Sbjct: 119 RSSGPGGQHVNKVETAVRGTHLPSGIQVMAMDSRSQLENKKLCLARLEAKIMVWQTEQLM 178 Query: 287 NERSAN 292 ++ + Sbjct: 179 EQQHSQ 184 >gi|239623937|ref|ZP_04666968.1| peptide chain release factor 2 [Clostridiales bacterium 1_7_47_FAA] gi|239521968|gb|EEQ61834.1| peptide chain release factor 2 [Clostridiales bacterium 1_7_47FAA] Length = 196 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 50/199 (25%), Positives = 82/199 (41%), Gaps = 13/199 (6%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 ++I +G G +E L VG +R ++ + L S + G Sbjct: 1 MRVQISSGQGPAECELAVGLFYRQLQKERRDMR-----LVQSAHGKTGRGYSSIMFETE- 54 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 M+ G R V++L + + D+ +R +T + G Sbjct: 55 --EDMRELEGSVLWICKSPFRPEHRRKNWFIDVSILEQLPDAREDM---KLRFETFCSGG 109 Query: 232 SGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 GGQHVN ++ VRI H+PTGI +V++ +SQH N+ AM L L D+E + E+ Sbjct: 110 KGGQHVNKVETGVRIIHVPTGISVVSTEARSQHMNKKLAMNRLCDILADMELENRQREK- 168 Query: 291 ANRKLQIGSGDRSERIRTY 309 L+ +R +R Y Sbjct: 169 ELAWLEHTRLERGNPVRIY 187 >gi|256426219|ref|YP_003126872.1| peptide chain release factor-like protein [Chitinophaga pinensis DSM 2588] gi|256041127|gb|ACU64671.1| peptide chain release factor H [Chitinophaga pinensis DSM 2588] Length = 210 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 10/192 (5%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 I+++ AG G E + V + M + A + + +L S+ G + Sbjct: 1 MNKSIIQVTAGRGPEECSRVVARVVEMMMKDARGKALDITLLESTKGHLKGTLLSAVLLI 60 Query: 169 GRGVFSRMKFE-------SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLED 221 G S K G + + V V + L+D Sbjct: 61 QTGGISSNKTLEAFIQEWRGTIQWVAQSPFRKYHKRKNWFVGVEVFD--VNKQQEWNLKD 118 Query: 222 IRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 +++++ RASG GGQHVN ++AVR TH+P+G+ V +SQ +N+ +K L A+ Sbjct: 119 VKLESCRASGPGGQHVNKVETAVRGTHLPSGMQVLAMDSRSQLENKQLCLKRLEAKFMAW 178 Query: 281 ERKRMANERSAN 292 + +++ ++ Sbjct: 179 QMEQLLAKQQDQ 190 >gi|256751359|ref|ZP_05492238.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus CCSD1] gi|256749741|gb|EEU62766.1| peptide chain release factor 1 [Thermoanaerobacter ethanolicus CCSD1] Length = 90 Score = 55.6 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQD 61 ++ +++R+ ++ ++S+ + + K +E+AAI I+ K Y + ++ + Sbjct: 1 MIDKLQAIEDRYVDLSQKISDPNIISNVAEWRKYVKEHAAIEDIVLKYREYKKVLEDIEA 60 Query: 62 LHTVIGDHN 70 ++ ++ Sbjct: 61 TKELLSSND 69 >gi|149626821|ref|XP_001515177.1| PREDICTED: similar to peptide chain release factor 1, putative, partial [Ornithorhynchus anatinus] Length = 612 Score = 55.2 bits (131), Expect = 2e-05, Method: Composition-based stats. Identities = 50/171 (29%), Positives = 80/171 (46%), Gaps = 23/171 (13%) Query: 124 EAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVH 183 EAA F +LF MY+ + + ++ + + + + +E GVH Sbjct: 108 EAAYFANELFEMYKNFCHSTNIQNTQINQNTLEI-------FDLGFSQNAKYLLYEFGVH 160 Query: 184 RVQRVPATEASGRVHTSAATVAVLPEAA-------------EIDVDIPLEDIRIDTMRAS 230 RVQR+P S R+ TS A V V+P I D+ ++TMR+ Sbjct: 161 RVQRIPK--NSNRIQTSTAVVTVVPTGWSSCHGGRGSKDSPHIGDSFKPSDVIMETMRSR 218 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDV 280 G+GGQ VN +++AVR+TH+PTG+ V SQ N+ A+ ++ D+ Sbjct: 219 GAGGQSVNKSETAVRVTHVPTGMSVSCQDTSSQIDNKSLALGKVKGMSLDM 269 >gi|115372342|ref|ZP_01459651.1| chaperone ClpB [Stigmatella aurantiaca DW4/3-1] gi|310819555|ref|YP_003951913.1| ClpA/B family protein [Stigmatella aurantiaca DW4/3-1] gi|115370555|gb|EAU69481.1| chaperone ClpB [Stigmatella aurantiaca DW4/3-1] gi|309392627|gb|ADO70086.1| ClpA/B family protein [Stigmatella aurantiaca DW4/3-1] Length = 939 Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 47/336 (13%), Positives = 111/336 (33%), Gaps = 44/336 (13%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 L+ R ++ D + A + ++I+ ++ +Q ++ + + Sbjct: 636 LEERRNQLLSETQAPNLWDDPARAAATLRAFRTVEAQINELERMEQAVTFARRLVREAKN 695 Query: 72 DSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL-FVG 130 + Q+ A + E E +++ L + L + EA ++ Sbjct: 696 E------VQLTSAAKQVEEVAREVQMSEALHASGATANDVEALVDICVSDSVEAQDAWIQ 749 Query: 131 DLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPA 190 +L MY +A R ++ +++ +++ +V I+G G + + E+G+HR Sbjct: 750 ELATMYLGWAQKRGYEAMLVAEAESPA----RVVVRIAGPGAYGFLAGEAGLHRRIEEEK 805 Query: 191 TEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIP 250 + V ++ ++ QH V Sbjct: 806 RQ----------RAYVRVHRGGALDAPEDLELSVE----GRPVKQHEGAFLERV------ 845 Query: 251 TGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 +++ + A + + E + + Q S D + R Y Sbjct: 846 ---------RTEVTVKDSATGRVLTLMGSGELDELKGIATRVVSGQATSTDEA---RRYY 893 Query: 311 FSQG-RITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 +G R+ D R +++ VL+G +D I ++ Sbjct: 894 LGRGARVEDPRTGAGTPRVKDVLRGDMDLFIAAWIS 929 >gi|307688011|ref|ZP_07630457.1| peptide chain release factor 2 [Clostridium cellulovorans 743B] Length = 80 Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 39/80 (48%), Positives = 58/80 (72%), Gaps = 3/80 (3%) Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 +D R SG+GGQHVN T+SAVRITHIPTGI+ +++SQH+N+ +AMK ++A+LY++E Sbjct: 1 MDVYRTSGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQMKAKLYELEM 60 Query: 283 KRMANERS--ANRKLQIGSG 300 ++ E+ + K IG G Sbjct: 61 QKKNAEKQAMEDNKSDIGWG 80 >gi|260596640|ref|YP_003209211.1| putative peptide chain release factor [Cronobacter turicensis z3032] gi|260215817|emb|CBA28276.1| Putative peptide chain release factor homolog [Cronobacter turicensis z3032] Length = 240 Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 53/197 (26%), Positives = 78/197 (39%), Gaps = 13/197 (6%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ + G E L V + AA + V+ G + + ++ G Sbjct: 37 ILLQLSSAQGPDECCLAVSKALEALRKEAAQADVALSVIEEEPGPRAGTLRSALVSLEGE 96 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + G + AV D+P DIR D +RAS Sbjct: 97 NAQPLAQRWCGTLQWICESPYRPRHARKNWFIGAAVF----TPVGDMPQSDIRFDALRAS 152 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN TDSA+R TH+ +GI V SE+SQH N K L L + + + + Sbjct: 153 GPGGQHVNKTDSAIRATHVASGISVKVQSERSQHAN-----KRLATLLIAHKLEEQRDAQ 207 Query: 290 SANRKLQIGSGDRSERI 306 SA +K Q +I Sbjct: 208 SAGQKAQRRW--FHHQI 222 >gi|238022850|ref|ZP_04603276.1| hypothetical protein GCWU000324_02770 [Kingella oralis ATCC 51147] gi|237865658|gb|EEP66796.1| hypothetical protein GCWU000324_02770 [Kingella oralis ATCC 51147] Length = 206 Score = 54.8 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 76/196 (38%), Gaps = 4/196 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 L++ G +E +F + R R A E+LS + + G V +SG G Sbjct: 2 IYLQLSTGQSPAECQIFAQFVLRKILREAEAAGVAAELLSQTASKH-GILSAVFALSGAG 60 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + G + V LP+ + D + IR +T RA G Sbjct: 61 AEDLAQRWLGTLQWIGNSPVRPKHPRKNWYIGVFRLPQIPALPDD---DSIRFETCRAGG 117 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN TDSAVR TH+ TG+ V + + + L A + + SA Sbjct: 118 KGGQHVNKTDSAVRATHLATGVSVRVESERSQHANKKRARELLALKLAEQHSAALGQHSA 177 Query: 292 NRKLQIGSGDRSERIR 307 + Q+ +R +R Sbjct: 178 HAHSQLYQVERGNPVR 193 >gi|212697119|ref|ZP_03305247.1| hypothetical protein ANHYDRO_01685 [Anaerococcus hydrogenalis DSM 7454] gi|212675894|gb|EEB35501.1| hypothetical protein ANHYDRO_01685 [Anaerococcus hydrogenalis DSM 7454] Length = 87 Score = 54.4 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 3/73 (4%) Query: 5 SHKQICDLKNRFAEIELRMSESPSV---DAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + ++ F E+E ++++ + D + K++ EY + PI+ K + + ++ Sbjct: 1 MLENLEHMRENFKELEKKLADPEVLSDTDKFKKVSREYNQLKPIVEKYNEIRAAEDMIEE 60 Query: 62 LHTVIGDHNSDSE 74 ++ + Sbjct: 61 NTELLKEAEDKEM 73 >gi|323486906|ref|ZP_08092222.1| hypothetical protein HMPREF9474_03973 [Clostridium symbiosum WAL-14163] gi|323691951|ref|ZP_08106201.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673] gi|323399769|gb|EGA92151.1| hypothetical protein HMPREF9474_03973 [Clostridium symbiosum WAL-14163] gi|323504009|gb|EGB19821.1| peptide chain release factor 2 [Clostridium symbiosum WAL-14673] Length = 197 Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 42/199 (21%), Positives = 77/199 (38%), Gaps = 13/199 (6%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 ++I +G G +E L +R ++ + G K + Sbjct: 1 MRIQISSGQGPAECELAAELFYRQLQKEIGDIRMVQC--------VRGSKAKGFSSVIFE 52 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 M G + V++L ++ ++ +R +T R+ G Sbjct: 53 TEEDMSSLEGSILWVCKSPYRPKHKRKNWYIDVSILENMPKLTQEL---KLRFETFRSGG 109 Query: 232 SGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 GGQ+VN ++ VR+ HIPTGI +V++ +SQH N+ A+ L L + + E+ Sbjct: 110 KGGQNVNKVETGVRVIHIPTGISVVSTEARSQHMNKKLAVNRLCDILAERNMESGRKEK- 168 Query: 291 ANRKLQIGSGDRSERIRTY 309 L+ +R +R Y Sbjct: 169 ELAWLEHNRLERGNPVRIY 187 >gi|703443|gb|AAB02290.1| release factor 1 [Streptococcus gordonii] Length = 67 Score = 54.0 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEE 59 ++Q+ +++R+ E+ +S+ V +++L++E A+ ++ Y Q Q Sbjct: 1 MNIYEQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASTRDTVTAYREYKQVLQNI 60 Query: 60 QDLHTVI 66 D +I Sbjct: 61 VDAEEMI 67 >gi|300697304|ref|YP_003747965.1| peptide chain release factor homolog protein [Ralstonia solanacearum CFBP2957] gi|299074028|emb|CBJ53565.1| putative peptide chain release factor homolog protein [Ralstonia solanacearum CFBP2957] Length = 210 Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 73/184 (39%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G +E L V R +A + E++ D + G Sbjct: 5 ILLQFSSAQGPAECELAVVKALACLLRESARAGVRAEIVEQEDGECAGTLRSALVSLEGD 64 Query: 172 VFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + VA +IR +T RAS Sbjct: 65 AEADVAQRWEGTIQWTCPSPYRPRHARKNWFFGVA----RCAAPAVTLPSEIRFETTRAS 120 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR H+ TGI V +E+SQH N+ A+ +L RL + E A +R Sbjct: 121 GPGGQHVNKTESAVRAIHVATGISVKVQTERSQHANKRLAVLLLAHRLANHEEAMNAAQR 180 Query: 290 SANR 293 + R Sbjct: 181 AQRR 184 >gi|68171148|ref|ZP_00544556.1| hypothetical protein EchaDRAFT_0701 [Ehrlichia chaffeensis str. Sapulpa] gi|67999418|gb|EAM86059.1| hypothetical protein EchaDRAFT_0701 [Ehrlichia chaffeensis str. Sapulpa] Length = 39 Score = 54.0 bits (128), Expect = 4e-05, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%) Query: 311 FSQGR-ITDHRINLTLYKLEYVLQGYIDDIINPLLT 345 + + D R + + VL G +D I LT Sbjct: 1 MHPYQMVKDIRTGHEVGNINSVLDGNLDSFIISALT 36 >gi|226320894|ref|ZP_03796445.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] gi|226233666|gb|EEH32396.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] Length = 86 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 45/86 (52%), Positives = 67/86 (77%) Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYK 161 +P+D +D K+ I+EIRAGTGG EAALF +L+ MY +Y+ +KWK E+++ ++ + GG+K Sbjct: 1 MPQDENDSKNIIIEIRAGTGGEEAALFANNLYSMYIKYSEKKKWKTEIINFNETELGGFK 60 Query: 162 EIVATISGRGVFSRMKFESGVHRVQR 187 EI+ I G+ VF ++K+ESGVHRVQR Sbjct: 61 EIIFEIKGKDVFKKLKYESGVHRVQR 86 >gi|207724424|ref|YP_002254821.1| peptide chain release factor homolog protein [Ralstonia solanacearum MolK2] gi|206589645|emb|CAQ36606.1| peptide chain release factor homolog protein [Ralstonia solanacearum MolK2] Length = 207 Score = 53.7 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 49/184 (26%), Positives = 72/184 (39%), Gaps = 6/184 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G +E L V R +A + E++ D + G Sbjct: 2 ILLQFSSAQGPAECELAVVKALACLLRESARAGVRAEIVEQEDGEHAGTLRSALVSLEGD 61 Query: 172 VFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + VA +IR +T RAS Sbjct: 62 AEADIAQRWEGTIQWTCPSPYRPRHARKNWFFGVA----RCAAPAVTLPSEIRFETTRAS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SAVR H+ TGI V +E+SQH N+ A+ +L RL E A +R Sbjct: 118 GPGGQHVNKTESAVRAVHVATGISVKVQTERSQHANKRLAVLLLAHRLASHEETMNAAQR 177 Query: 290 SANR 293 + R Sbjct: 178 AQRR 181 >gi|332878808|ref|ZP_08446523.1| putative peptide chain release factor H [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332683159|gb|EGJ56041.1| putative peptide chain release factor H [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 235 Score = 53.7 bits (127), Expect = 5e-05, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 88/204 (43%), Gaps = 5/204 (2%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATI 167 + I++I AG G E V + +++ + A + ++S + D K + + Sbjct: 1 MEEKIIQITAGRGPLECQWVVAKVLKVFLQEATQKGIDYTIVSREEGDANLTIKSVTVQL 60 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G+ + + +K G + V D++ T Sbjct: 61 KGKELSAFLKSWLGTVCWVGKSTFRKFHQRSNWYIG--VFELDQLQRQSFSERDVQFQTT 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G+GGQ+VN +SAVR TH+PTG+ + +SQ N+ A+ LR +L ++E +++ Sbjct: 119 RSQGNGGQNVNKVNSAVRATHLPTGVSVFAQDSRSQLDNKKLALNRLREKLAEIELQQL- 177 Query: 287 NERSANRKLQIGSGDRSERIRTYN 310 E++ N R +RT+N Sbjct: 178 AEQAQNHWNNHTQVQRGNPVRTFN 201 >gi|225390312|ref|ZP_03760036.1| hypothetical protein CLOSTASPAR_04065 [Clostridium asparagiforme DSM 15981] gi|225043636|gb|EEG53882.1| hypothetical protein CLOSTASPAR_04065 [Clostridium asparagiforme DSM 15981] Length = 196 Score = 53.3 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 85/207 (41%), Gaps = 26/207 (12%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 ++I +G G E L VG ++ R +++++S GG+ +V Sbjct: 1 MADMRIQISSGQGPEECELAVGLFYQALRREVE----EIQMVSCVKGRRGGFSSVVLE-- 54 Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 + G + V++L E ++ +R +T R Sbjct: 55 -----ADWSGLEGSVLWVCKSPLRPGHKRKNWYIDVSILEEIPRTSKEM---QVRFETFR 106 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 + G GGQ+VN ++ VR+ HIPTGI +V++ +SQH N+ A+ L L D + + Sbjct: 107 SGGKGGQNVNKVETGVRVVHIPTGIAVVSTEARSQHMNKQIALNRLCDILADRDLQC--- 163 Query: 288 ERSANRKLQIGSG-----DRSERIRTY 309 A R+ ++ +R +R Y Sbjct: 164 ---ARREKELAWMEHNRLERGNPVRIY 187 >gi|213423387|ref|ZP_03356375.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 62 Score = 53.3 bits (126), Expect = 6e-05, Method: Composition-based stats. Identities = 40/62 (64%), Positives = 51/62 (82%) Query: 136 YERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASG 195 Y RYA R+W+VE++S S+ + GGYKEI+A ISG GV+ R+KFESG HRVQRVPATE+ G Sbjct: 1 YSRYAEARRWRVEIMSMSEGEHGGYKEIIAKISGDGVYGRLKFESGGHRVQRVPATESQG 60 Query: 196 RV 197 R+ Sbjct: 61 RI 62 >gi|78066331|ref|YP_369100.1| peptide chain release factor-like protein [Burkholderia sp. 383] gi|77967076|gb|ABB08456.1| Class I peptide chain release factor [Burkholderia sp. 383] Length = 204 Score = 52.9 bits (125), Expect = 8e-05, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 74/202 (36%), Gaps = 7/202 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT-ISGR 170 +++I + G E L + R + A ++ V VL + + G + G Sbjct: 1 MLMQISSAHGPLECQLAAANALRRLQAEADAQRVVVTVLDAEPGERPGTLRSALLDLDGA 60 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 G + +G + V +P D+R + MRA Sbjct: 61 GAQALADRWTGTLQWICASPYRLRHPRKNWFIGV----TRCADAQPLPDGDVRFEAMRAR 116 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN T SA+R TH+ TG+ V + R L E R A++ Sbjct: 117 GPGGQHVNKTSSAIRATHVATGLSVRVESERSQHANKRLALQLLQVRLQQEADRHASDAR 176 Query: 291 ANRKLQIGSGDRSERIRTYNFS 312 R++Q + +R +R F Sbjct: 177 RQRRMQHFALERGNPVR--VFH 196 >gi|126737179|ref|ZP_01752914.1| putative peptide chain release factor [Roseobacter sp. SK209-2-6] gi|126721764|gb|EBA18467.1| putative peptide chain release factor [Roseobacter sp. SK209-2-6] Length = 213 Score = 52.5 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 1/120 (0%) Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIP 218 GYK V +SG + K G + + + V LP + I Sbjct: 52 GYKSAVVLVSGAEAEAFAKNWRGTIQWRAQSNLRPKHKRANWFIGVFDLPASVRTPERIQ 111 Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARL 277 D+ +DT RA G GGQH NTTDSAVR TH PTG V E+SQH+N+ A++ L+ + Sbjct: 112 ASDVILDTFRAGGPGGQHQNTTDSAVRATHRPTGLSAVAREERSQHRNKALALERLQHLM 171 >gi|169838095|ref|ZP_02871283.1| Bacterial Peptide Chain Release Factor 1 (RF-1) [candidate division TM7 single-cell isolate TM7a] Length = 157 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 31/112 (27%), Positives = 61/112 (54%), Gaps = 4/112 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLT---EEYAAISPIISKISIYDQKKQEEQDLH 63 +++ D+ + E+ ++ + V K+ + +I ++ K + Y +K+E + L Sbjct: 3 QKLDDVVLKHKELTEKLMDPEVVSDPKKIMEYNKALNSIDEVVKKYTYYKSRKEELEGLK 62 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + D+E++++ E+ IE+EI LE E+ LLLPKD +DDK+ I+E Sbjct: 63 EDLKIEK-DAEMKEMMHEEIHLIEEEIPHLEEELKVLLLPKDPNDDKNVIME 113 >gi|169837781|ref|ZP_02870969.1| peptide chain release factor 1 [candidate division TM7 single-cell isolate TM7a] Length = 63 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 38/59 (64%), Positives = 46/59 (77%) Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSA 243 +QRVP+TE+ GRVHTS TVAVLPEA E D++I D++ID R+ G GGQ VNTTDSA Sbjct: 1 MQRVPSTESQGRVHTSTVTVAVLPEAEETDIEINPNDLKIDVFRSGGHGGQSVNTTDSA 59 >gi|300770278|ref|ZP_07080157.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33861] gi|300762754|gb|EFK59571.1| peptide chain release factor RF4 [Sphingobacterium spiritivorum ATCC 33861] Length = 232 Score = 52.1 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 4/154 (2%) Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 G ISG + +G + S + + V Sbjct: 50 GTVISASLKISGENCMAFSALWTGTIQWIGKSDFRKSHKRKNWF--IEVFEIKPSASWIF 107 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRAR 276 ++DIR MR+SG+GGQHVN SAVR TH+PTG+ +V +SQHQN+ A + L+ + Sbjct: 108 DVKDIRYQAMRSSGAGGQHVNKVSSAVRATHMPTGVSVVAMDSRSQHQNKKIATERLQTK 167 Query: 277 LYDVERKRMANERSANRKLQIGSGDRSERIRTYN 310 + ++ QI +R IRT+ Sbjct: 168 VNELNLLHWKENEKYKWFNQI-QVERGNAIRTFV 200 >gi|29346864|ref|NP_810367.1| peptide chain release factor-like protein [Bacteroides thetaiotaomicron VPI-5482] gi|29338761|gb|AAO76561.1| putative peptide chain release factor [Bacteroides thetaiotaomicron VPI-5482] Length = 206 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 46/184 (25%), Positives = 71/184 (38%), Gaps = 4/184 (2%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 L+I +G G +E V + R A K+E++ Sbjct: 4 KVYLQITSGRGPAECCRVVALVLERIVRQAQASGLKMEMIEREVGPVNRTLLSATIALQG 63 Query: 171 GVFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + E G + + V V + D R +T+RA Sbjct: 64 AASGELADEWEGTVQWIAQSPYRIYHKRKNWF--VGVHSFVLSESQEATERDFRYETLRA 121 Query: 230 SGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVN T+SAVR HIP+G+ +V S ++SQ QN+ A + L +L ++ + Sbjct: 122 SGPGGQHVNKTESAVRAVHIPSGMSVVASDQRSQWQNKKLATERLLVKLSSWTMEQAMIQ 181 Query: 289 RSAN 292 N Sbjct: 182 AQEN 185 >gi|298386489|ref|ZP_06996045.1| peptide chain release factor H [Bacteroides sp. 1_1_14] gi|298260866|gb|EFI03734.1| peptide chain release factor H [Bacteroides sp. 1_1_14] Length = 206 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 4/184 (2%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 L+I +G G +E V + R A KVE++ Sbjct: 4 KVYLQITSGRGPAECCRVVALVLERIVRQAQASGLKVEMIEREVGPVNRTLLSATIALQG 63 Query: 171 GVFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + E G + + V V + D R +T+RA Sbjct: 64 TASGELADEWEGTVQWIAQSPYRIYHKRKNWF--VGVHSFVLSESQEATERDFRYETLRA 121 Query: 230 SGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVN T+SAVR HIP+G+ +V S ++SQ QN+ A + L +L ++ + Sbjct: 122 SGPGGQHVNKTESAVRAVHIPSGMSVVASDQRSQWQNKKLATERLLVKLSSWTMEQAMIQ 181 Query: 289 RSAN 292 N Sbjct: 182 AQEN 185 >gi|261884219|ref|ZP_06008258.1| peptide chain release factor 2 [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 115 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 46/110 (41%), Gaps = 2/110 (1%) Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + K D + + N++ + + + + + + ++ DD K Sbjct: 8 KFKNVKSAISDAYELYELANAEDD--EQTINSLFEDAQNLENKITNLEISMMLSGEDDSK 65 Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY 160 + I+ I G GG+E+ + L+RMY R+ +KVE L + D+ G Sbjct: 66 NAIVSIHPGAGGTESNDWASMLYRMYLRFCEREGFKVETLDFQEGDEAGL 115 >gi|253572326|ref|ZP_04849729.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838101|gb|EES66189.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 206 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 47/184 (25%), Positives = 71/184 (38%), Gaps = 4/184 (2%) Query: 111 SCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 L+I +G G +E V + R A KVE++ Sbjct: 4 KVYLQITSGRGPAECCRVVALVLERIVRQAQASGLKVEMIEREVGPVNRTLLSATIALQG 63 Query: 171 GVFSRMKFE-SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + E G + + V V + D R +T+RA Sbjct: 64 AASGELADEWEGTVQWIAQSPYRIYHKRKNWF--VGVHSFVLSESQEATERDFRYETLRA 121 Query: 230 SGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVN T+SAVR HIP+G+ +V S ++SQ QN+ A + L +L ++ + Sbjct: 122 SGPGGQHVNKTESAVRAVHIPSGMSVVASDQRSQWQNKKLATERLLVKLSSWTMEQAMIQ 181 Query: 289 RSAN 292 N Sbjct: 182 AQEN 185 >gi|281414236|ref|ZP_06245978.1| peptide chain release factor 2 [Micrococcus luteus NCTC 2665] Length = 107 Score = 51.3 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 26/68 (38%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + +K AE+E + S D + + + +S + + + +DL T++ Sbjct: 25 DLDRIKADIAELEQQASAPDLWDDPEEAQKVTSKLSHRQTDLKRITSLESRIEDLETMVE 84 Query: 68 DHNSDSEI 75 + E Sbjct: 85 LAAEEDEP 92 >gi|213420646|ref|ZP_03353712.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 112 Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 5/114 (4%) Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 Q + L + + + + + A + E ++ + + D C Sbjct: 3 QGLDDVSGLLELAVEADDEETFNEAV-----AELNTLEEKLAQLEFRRMFSGEYDSADCY 57 Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 L+I+AG+GG+EA + L RMY R+A R +K EV+ S+ + G K I Sbjct: 58 LDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVAGIKSATIKI 111 >gi|160935130|ref|ZP_02082513.1| hypothetical protein CLOBOL_00025 [Clostridium bolteae ATCC BAA-613] gi|158441861|gb|EDP19558.1| hypothetical protein CLOBOL_00025 [Clostridium bolteae ATCC BAA-613] Length = 198 Score = 51.0 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 60/130 (46%), Gaps = 5/130 (3%) Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G + R V++L + I + +R +T R+ G GGQHVN Sbjct: 62 GSVQWICKSPYRPGHRRKNWYVDVSILDQVPRISEE---RMVRFETFRSGGKGGQHVNKV 118 Query: 241 DSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGS 299 ++ VR HIPTG +V++ +SQH N+ AM L + L ++ + E+S ++ Sbjct: 119 ETGVRAIHIPTGTAVVSTQARSQHMNKQIAMDRLCSILAEMNARNQQKEKS-LAWMEHAR 177 Query: 300 GDRSERIRTY 309 +R +R Y Sbjct: 178 LERGNPVRIY 187 >gi|239835036|ref|ZP_04683364.1| Peptide chain release factor 2 [Ochrobactrum intermedium LMG 3301] gi|239823099|gb|EEQ94668.1| Peptide chain release factor 2 [Ochrobactrum intermedium LMG 3301] Length = 136 Score = 50.6 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 35/109 (32%), Positives = 59/109 (54%), Gaps = 1/109 (0%) Query: 183 HRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDS 242 + + + +V+ + A D+ I D+R +T+RA G GGQH NT+DS Sbjct: 8 YLLVFKSPVRPQHKRQHWFISVSRIARPAINDIVIQPNDVRFETLRAGGPGGQHQNTSDS 67 Query: 243 AVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 AVR+ HIPTG ++ +E+SQH+N+ A++ L L ++ + N + Sbjct: 68 AVRVVHIPTGIQLIARNERSQHRNKATALERLEMVLKHLQEDEIENAEA 116 >gi|290984795|ref|XP_002675112.1| predicted protein [Naegleria gruberi] gi|284088706|gb|EFC42368.1| predicted protein [Naegleria gruberi] Length = 156 Score = 50.6 bits (119), Expect = 4e-04, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 9/156 (5%) Query: 42 ISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLL 101 + ++ I ++L + + +D E+ + Q + + + + E Sbjct: 2 LEDQLNFIDNTIADINNNEELLKL-SEMENDKEMIEYIQKSLSDLINVLEKKE----IES 56 Query: 102 LPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMY---ERYAALRKWKVEVLSSSDNDDG 158 D K C LEI G GG +A+ + L MY R + L ++V + +S + Sbjct: 57 FLSGPHDSKDCYLEIHTGAGGEDASDWSQMLLNMYINCLRGSELSSFEVTLEDTSFKET- 115 Query: 159 GYKEIVATISGRGVFSRMKFESGVHRVQRVPATEAS 194 G + + ISGR + +K E GVHR+ R+ A Sbjct: 116 GIRSALLFISGRYAYGYLKHEQGVHRLVRLSPFNAD 151 >gi|331001770|ref|ZP_08325292.1| peptide chain release factor H [Lachnospiraceae oral taxon 107 str. F0167] gi|330412744|gb|EGG92127.1| peptide chain release factor H [Lachnospiraceae oral taxon 107 str. F0167] Length = 200 Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 10/199 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 IL++ AG G E V + R + N G ++ Sbjct: 1 MILQLSAGMGPVECQRAVFGICRELMKE--------IPSPEILNYVAGAEDETFLSVMLY 52 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + + G + V+++PE E++ + D+RI+ A+G Sbjct: 53 SKQDVSYLEGSMLWICKSKYRPWHKRKNWFIDVSIIPETTEMEENFSENDLRIEKFHANG 112 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 GGQ+VN ++ VR+ HIP+GI V+S+ E+SQ N+ A++ L L R+ Sbjct: 113 PGGQNVNKVETGVRVIHIPSGIRVSSTRERSQLLNKKDAIRKLAIVLKSRNDFEKVKSRN 172 Query: 291 ANRKLQIGSGDRSERIRTY 309 + R +R Y Sbjct: 173 NAW-SKHSEIVRGNPVRIY 190 >gi|300693607|ref|YP_003749580.1| peptide chain release factor homolog protein [Ralstonia solanacearum PSI07] gi|299075644|emb|CBJ34941.1| putative peptide chain release factor homolog protein [Ralstonia solanacearum PSI07] Length = 207 Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 45/194 (23%), Positives = 71/194 (36%), Gaps = 5/194 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L+ + G E L V +R +A +VEV+ D + G + + ++ G Sbjct: 2 ILLQFSSAQGPVECELAVVKALAYLQRESAQAGVRVEVIEQEDGERPGTLRSALVSLEGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + VA +IR +T R+S Sbjct: 62 AEAAAAQRWEGTIQWTSPSPYRPRHARKNWFFGVA----RCATPAVTLPSEIRFETTRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN T+SAVR H+ TGI V + R +L A + M + Sbjct: 118 GPGGQHVNKTESAVRAIHMATGISVKVQTERSQHANKRLAVLLLAHKLASHDEAMNAAQR 177 Query: 291 ANRKLQIGSGDRSE 304 A R+ +R Sbjct: 178 AQRRTLHRQVERGN 191 >gi|255605645|ref|XP_002538425.1| conserved hypothetical protein [Ricinus communis] gi|223512202|gb|EEF23957.1| conserved hypothetical protein [Ricinus communis] Length = 75 Score = 50.2 bits (118), Expect = 5e-04, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%) Query: 243 AVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDR 302 AV +TH PTG+ VT +SQ NR A L +L V + +A+++ Q+G+G R Sbjct: 2 AVVLTHRPTGVSVTIDSRSQADNRRVARDELLRKLRAVSKADEVATAAADKRAQVGTGQR 61 Query: 303 SERIRTYNFSQGRI 316 +++R+Y Q ++ Sbjct: 62 GDKVRSYQ-VQNQV 74 >gi|53714002|ref|YP_099994.1| peptide chain release factor-like protein [Bacteroides fragilis YCH46] gi|253567006|ref|ZP_04844457.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265764352|ref|ZP_06092920.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52216867|dbj|BAD49460.1| putative peptide chain release factor [Bacteroides fragilis YCH46] gi|251944130|gb|EES84639.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263256960|gb|EEZ28306.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301163677|emb|CBW23231.1| putative peptide chain release factor [Bacteroides fragilis 638R] Length = 206 Score = 49.4 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + L+I +G G E V + R A RK +VE+L V ++ Sbjct: 1 MEKTYLQITSGRGPVECCRVVALVLEKILREAQKRKLRVEILEKETGPVNRTLLSVV-VA 59 Query: 169 GRGVFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDT 226 G + + V + R V V + +DIR +T Sbjct: 60 LEGAGCDVLADEWEGTVLWIARSPYRIHHRRKNWF--VGVQTFLLSESREATEDDIRYET 117 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 +RASG GGQHVN T+SAVR HIP+GI +V S ++SQ QN+ A + L +L ++ Sbjct: 118 LRASGPGGQHVNKTESAVRAVHIPSGISVVASDQRSQWQNKKLATERLLVKLTAWNIEQA 177 Query: 286 ANERS 290 + Sbjct: 178 MIQAQ 182 >gi|297569022|ref|YP_003690366.1| ABC transporter related protein [Desulfurivibrio alkaliphilus AHT2] gi|296924937|gb|ADH85747.1| ABC transporter related protein [Desulfurivibrio alkaliphilus AHT2] Length = 668 Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 9/60 (15%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 9 ICDLKNRFAEIELRMSESPS---VDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 + + R E+E +++ + + +L++EYA + + +++ E +++ T Sbjct: 607 VEKQEQRKDELEKLLADPEIYHRQEEFAELSKEYAELERRLERLYDQWEKVNSEIEEILT 666 >gi|218516475|ref|ZP_03513315.1| peptide chain release factor 1 [Rhizobium etli 8C-3] Length = 133 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 18/43 (41%), Positives = 27/43 (62%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS 43 M L +++ +L+ RF EIE RMS P+ D Y+KL EY+ + Sbjct: 1 MAKLPVEKMLELERRFDEIEARMSAGPAADVYVKLASEYSELQ 43 >gi|33322102|gb|AAQ06771.1|AF496112_1 peptide chain release factor 1 [Lactobacillus delbrueckii subsp. lactis] Length = 64 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 32/64 (50%), Positives = 46/64 (71%) Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184 A+LF GDL RMYE+YA + WKV ++ S + GGYK + I+G V+S++K+E+G HR Sbjct: 1 ASLFAGDLLRMYEKYAENQGWKVSIVDSEQTEVGGYKRVAIMITGNKVYSKLKYENGAHR 60 Query: 185 VQRV 188 VQR+ Sbjct: 61 VQRI 64 >gi|228472445|ref|ZP_04057207.1| putative peptide chain release factor H [Capnocytophaga gingivalis ATCC 33624] gi|228276130|gb|EEK14877.1| putative peptide chain release factor H [Capnocytophaga gingivalis ATCC 33624] Length = 231 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 49/202 (24%), Positives = 84/202 (41%), Gaps = 5/202 (2%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATI 167 + I++I AG G E V + + + + A +LS + D K + + Sbjct: 1 MEEKIIQITAGRGPLECQWVVAKVLKTFLQEATQAGISYTILSREEGDANLTVKSVTLQL 60 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G+ + S +K G + V D++ T Sbjct: 61 KGKELASFLKTWLGTVCWVGKSTFRKFHQRSNWYIG--VFELDQLQRQLFSERDVQFQTT 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G+GGQ+VN +SAVR TH+PTGI V +SQ N+ A+ L+ +L ++E +++ Sbjct: 119 RSQGNGGQNVNKVNSAVRATHLPTGISVLAQDSRSQLDNKKLALARLKEKLAEMELQQL- 177 Query: 287 NERSANRKLQIGSGDRSERIRT 308 E++ N R +RT Sbjct: 178 AEQAQNHWNNHTQVQRGNPVRT 199 >gi|297517598|ref|ZP_06935984.1| peptide chain release factor 1 [Escherichia coli OP50] Length = 92 Score = 49.4 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 33/73 (45%), Gaps = 3/73 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L R E++ + ++ ++ + L+ EYA +S + + + Q +++ + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDWQQVQEDIETAQM 67 Query: 65 VIGDHNSDSEIRD 77 ++ D +D Sbjct: 68 MLDDPEMREMAQD 80 >gi|213963016|ref|ZP_03391275.1| putative peptide chain release factor H [Capnocytophaga sputigena Capno] gi|213954357|gb|EEB65680.1| putative peptide chain release factor H [Capnocytophaga sputigena Capno] Length = 230 Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 50/204 (24%), Positives = 86/204 (42%), Gaps = 9/204 (4%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATI 167 + I++I AG G E V + + + + AA +LS + D K + + Sbjct: 1 MQEKIIQITAGRGPLECQWVVAKVLKTFLQEAAQAGIDYTILSREEGDANLTVKSVTLQL 60 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G+ + +K G + V D++ T Sbjct: 61 KGKELAPFLKTWLGTVCWVGKSTFRKFHQRSNWYIG--VFELDQLQRQTFSERDVQFQTT 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G+GGQ+VN +SAVR TH+PTGI V +SQ N+ A+ L+ +L ++E +++A Sbjct: 119 RSQGNGGQNVNKVNSAVRATHLPTGISVLAQDSRSQLDNKKLALARLKEKLAEMELQQLA 178 Query: 287 NERSA--NRKLQIGSGDRSERIRT 308 + + N Q+ R +RT Sbjct: 179 EQAQSHWNNHTQV---QRGNPVRT 199 >gi|255009670|ref|ZP_05281796.1| peptide chain release factor-like protein [Bacteroides fragilis 3_1_12] gi|313147455|ref|ZP_07809648.1| class I peptide chain release factor [Bacteroides fragilis 3_1_12] gi|313136222|gb|EFR53582.1| class I peptide chain release factor [Bacteroides fragilis 3_1_12] Length = 207 Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 53/187 (28%), Positives = 77/187 (41%), Gaps = 6/187 (3%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + L+I +G G E V + + A RK KVE++ I+ Sbjct: 2 MEKTYLQITSGRGPVECCRVVALVLERILKQAQTRKLKVEIVEKEAGPANRTLLSAV-IA 60 Query: 169 GRGVFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDT 226 G E V + R V V + +IR +T Sbjct: 61 LEGAGCDTLVEEWEGTVLWIARSPYRIHHRRKNWF--VGVQTFLLSESREATENEIRYET 118 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 +RASG GGQHVN T+SAVR HIP+GI +V S ++SQ QN+ A + L +L ++ Sbjct: 119 LRASGPGGQHVNKTESAVRAVHIPSGISVVASDQRSQWQNKKLATERLLVKLTAWNVEQA 178 Query: 286 ANERSAN 292 + AN Sbjct: 179 MIQAQAN 185 >gi|326334366|ref|ZP_08200579.1| peptide chain release factor H [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325693450|gb|EGD35376.1| peptide chain release factor H [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 233 Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 48/204 (23%), Positives = 87/204 (42%), Gaps = 9/204 (4%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG-GYKEIVATI 167 + I++I AG G E V + +++ + A +LS + D K + + Sbjct: 1 MQEKIIQITAGRGPLECQWVVAKVLKVFLQEATQAGISYTILSREEGDANLTVKSVTVQL 60 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G+ + + +K G + V D++ T Sbjct: 61 KGKELAAFLKTWLGTVCWVGKSTFRKFHQRSNWYIG--VFELDQLQRQPFSECDVQFQTT 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 R+ G+GGQ+VN +SAVR TH+PTGI V +SQ N+ A+ L+ +L ++E ++++ Sbjct: 119 RSQGNGGQNVNKVNSAVRATHLPTGISVLAQDSRSQLDNKKFALARLKEKLIEIELQQLS 178 Query: 287 NERSA--NRKLQIGSGDRSERIRT 308 + + N Q+ R +RT Sbjct: 179 EQAQSHWNNHTQV---QRGNPVRT 199 >gi|224538378|ref|ZP_03678917.1| hypothetical protein BACCELL_03269 [Bacteroides cellulosilyticus DSM 14838] gi|224520007|gb|EEF89112.1| hypothetical protein BACCELL_03269 [Bacteroides cellulosilyticus DSM 14838] Length = 205 Score = 49.0 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 4/186 (2%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATI 167 + ++I +G G +E V + + A + K E++ + + V ++ Sbjct: 1 MEKVYMQITSGRGPAECCRVVALVLEKILKQAVAKGVKTEIVERETGPLNRTLLSAVISL 60 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G + ++ G + + V V + +IR +T+ Sbjct: 61 QGGDYHALIEDWEGSVQWIAQSPYRIYHKRKNWF--VGVQTFTLSESQEATEAEIRYETL 118 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 RASG GGQHVN T+SAVR HIPTG+ +V S ++SQ QN+ A + L +L ++ Sbjct: 119 RASGPGGQHVNKTESAVRAVHIPTGMSVVASDQRSQWQNKKLATERLLLKLASWSIEQAM 178 Query: 287 NERSAN 292 + AN Sbjct: 179 IQAQAN 184 >gi|60682199|ref|YP_212343.1| peptide chain release factor-like protein [Bacteroides fragilis NCTC 9343] gi|60493633|emb|CAH08422.1| putative peptide chain release factor [Bacteroides fragilis NCTC 9343] Length = 206 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 52/185 (28%), Positives = 78/185 (42%), Gaps = 6/185 (3%) Query: 109 DKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATIS 168 + L+I +G G E V + R A RK +VE+L V ++ Sbjct: 1 MEKTYLQITSGRGPVECCRVVALVLEKILREAQKRKLRVEILEKETGPVNRTLLSVV-VA 59 Query: 169 GRGVFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDT 226 G + + V + R V V + +DIR +T Sbjct: 60 LEGAGCDVLADEWEGTVLWIARSPYRIHHRRKNWF--VGVQTFLLSESCEATEDDIRYET 117 Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRM 285 +RASG GGQHVN T+SAVR HIP+GI +V S ++SQ QN+ A + L +L ++ Sbjct: 118 LRASGPGGQHVNKTESAVRAVHIPSGISVVASDQRSQWQNKKLATERLLVKLTAWNIEQA 177 Query: 286 ANERS 290 + Sbjct: 178 MIQAQ 182 >gi|315652605|ref|ZP_07905584.1| chain release factor B [Eubacterium saburreum DSM 3986] gi|315485145|gb|EFU75548.1| chain release factor B [Eubacterium saburreum DSM 3986] Length = 199 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 2/133 (1%) Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 + G + V+++PE +D + DI ++ ASG GGQ+V Sbjct: 59 YIEGTMLWICKSRYRPEHKRKNWFVDVSIIPETVNVDDNFSEADIIVEKFHASGPGGQNV 118 Query: 238 NTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQ 296 N ++ VR+ HIPTGI ++S+ E+SQ N+ A++ L L + ++ ++ + Sbjct: 119 NKVETGVRVIHIPTGIRISSTRERSQLMNKKDALRKLAIVLKNKNTSQIEQSKNNAW-SK 177 Query: 297 IGSGDRSERIRTY 309 R IR Y Sbjct: 178 HTEIVRGNPIRVY 190 >gi|70729456|ref|YP_259194.1| peptide chain release factor-like protein [Pseudomonas fluorescens Pf-5] gi|68343755|gb|AAY91361.1| peptide chain release factor 2 [Pseudomonas fluorescens Pf-5] Length = 206 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 79/198 (39%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD-GGYKEIVATISGR 170 +L++ + G +E L V R A + ++ ++ + ++ ++ ++ G Sbjct: 3 MLLQLSSAQGPAECELAVTHALRRLHHEAEAQNVRLGIIEQVASQARDAHRSVLVSLDGE 62 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + +G + R + + +IR + MRAS Sbjct: 63 HAANLARRWTGTLLWICKSPLRPAHRRKNWYFA----GQPFCALEEAEGGEIRFEAMRAS 118 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ TGI V + + R ++L + +++ E Sbjct: 119 GPGGQHVNKTDSAVRATHVATGISVKVQSERSQHDNKRLARLLIQQRLADRQEQSVQELR 178 Query: 291 ANRKLQIGSGDRSERIRT 308 R+ +R +RT Sbjct: 179 LQRRDAHHRVERGNAVRT 196 >gi|71027355|ref|XP_763321.1| hypothetical protein [Theileria parva strain Muguga] gi|68350274|gb|EAN31038.1| hypothetical protein TP03_0303 [Theileria parva] Length = 81 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 34/63 (53%), Gaps = 2/63 (3%) Query: 293 RKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVL-QG-YIDDIINPLLTAHQAK 350 R Q +GDRSERIRT N+ ITDHR +TL ++ L G I+ I L AK Sbjct: 6 RMSQYRTGDRSERIRTINYLHDSITDHRCRVTLDGVDSYLSSGHGIEKIHQALTQLDNAK 65 Query: 351 MIG 353 +I Sbjct: 66 IIQ 68 >gi|163754646|ref|ZP_02161768.1| putative peptide chain release factor [Kordia algicida OT-1] gi|161325587|gb|EDP96914.1| putative peptide chain release factor [Kordia algicida OT-1] Length = 198 Score = 48.7 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 G + A + V V + ++I++ T R+SG+GGQHVN Sbjct: 70 GSIQFIFRSPYRAHHQRKNWFVDVKVYV--MPTQISWSPKEIQVKTARSSGAGGQHVNKV 127 Query: 241 DSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 ++AV + HIPTGI V S E+SQ N+ A L + +K+ Sbjct: 128 ETAVSMIHIPTGITVQASEERSQFLNKKLAFARLDIAIKAQNQKQQNAIEKQK 180 >gi|301019126|ref|ZP_07183330.1| putative peptide chain release factor H [Escherichia coli MS 69-1] gi|300399385|gb|EFJ82923.1| putative peptide chain release factor H [Escherichia coli MS 69-1] Length = 204 Score = 48.7 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + ++++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQKNSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|269119386|ref|YP_003307563.1| peptide chain release factor H [Sebaldella termitidis ATCC 33386] gi|268613264|gb|ACZ07632.1| peptide chain release factor H [Sebaldella termitidis ATCC 33386] Length = 206 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 50/196 (25%), Positives = 84/196 (42%), Gaps = 10/196 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 + I +G G E V + F+ ++ A + + S + G K Sbjct: 1 MRMIISSGNGPQECEKAVYEYFKYLKKEFAKYNIEYRYIES----EAGNKAKTFRSVVLQ 56 Query: 172 VFSRMKFE---SGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228 + KF +G + R ++ E ++ I + I TMR Sbjct: 57 IKENTKFTNIYTGTILWINESIYRKNHRRKNWYIKSVLIKENEFLNKSISKKTTEITTMR 116 Query: 229 ASGSGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 +SG+GGQ+VN ++AVRI HIPTGI +V+ E++Q+ N+ A+K L +L ++E Sbjct: 117 SSGNGGQNVNKLETAVRIKHIPTGISIVSREERTQYANKKAAVKKLEEKLTNMEIYHQKE 176 Query: 288 ERSANR--KLQIGSGD 301 E K +I G+ Sbjct: 177 EEMKIWSVKNEIERGN 192 >gi|266622646|ref|ZP_06115581.1| putative peptide chain release factor H [Clostridium hathewayi DSM 13479] gi|288865627|gb|EFC97925.1| putative peptide chain release factor H [Clostridium hathewayi DSM 13479] Length = 206 Score = 48.3 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 84/204 (41%), Gaps = 23/204 (11%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 ++I +G G +E L VG L+ +R A + G +E ++I Sbjct: 1 MRIQISSGQGPAECELAVGLLYEELKREAPD-------IRLLSFTQGKKREGFSSIMFET 53 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 E V + + P + V++L + + + +R +T ++ G Sbjct: 54 EHDFTSLEGSVLWICKSPYRP-EHKRKNWYVDVSILETVPRVTEE---KLVRFETFKSGG 109 Query: 232 SGGQHVNTTDSAVRITHIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 GGQ+VN ++ VR HIPTG +V++ +SQH N+ A+ L L ++ + S Sbjct: 110 KGGQNVNKVETGVRAIHIPTGTAVVSTEARSQHMNKQAALNRLCEILAEMNLE------S 163 Query: 291 ANRKLQIGSG-----DRSERIRTY 309 R+ + +R +R Y Sbjct: 164 GRREKNLAWMEHTRLERGNPVRVY 187 >gi|227357000|ref|ZP_03841372.1| peptide chain release factor [Proteus mirabilis ATCC 29906] gi|227162878|gb|EEI47837.1| peptide chain release factor [Proteus mirabilis ATCC 29906] Length = 203 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 42/182 (23%), Positives = 69/182 (37%), Gaps = 5/182 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G E + V + R+ ++ + G K ++ ++ G Sbjct: 1 MLLQFSSAQGPEECCIAVEKTLNYFLTVTEQRQ-VDVIILEQEPSRYGLKSVLVSLKGAE 59 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + + SG + Q + +A E +I +I +TMRA+G Sbjct: 60 AKAIAQQWSGTVQWQCTSTLRPKHKRKNWFIGIA----YFEPPQEIQDTEILFETMRANG 115 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T SAVR THI TGI V + + K L A + + + Sbjct: 116 PGGQHVNKTSSAVRATHIATGISVKIQSQRSQHANKKLAKQLIAWHLNHYLSQQQASFNN 175 Query: 292 NR 293 R Sbjct: 176 QR 177 >gi|293403381|ref|ZP_06647472.1| prfH [Escherichia coli FVEC1412] gi|293408390|ref|ZP_06652229.1| peptide chain release factor H [Escherichia coli B354] gi|298378993|ref|ZP_06988874.1| prfH [Escherichia coli FVEC1302] gi|300898963|ref|ZP_07117256.1| putative peptide chain release factor H [Escherichia coli MS 198-1] gi|59889806|emb|CAH19162.1| Probable peptide chain release factor [Escherichia coli] gi|284920069|emb|CBG33127.1| putative peptide chain release factor [Escherichia coli 042] gi|291429234|gb|EFF02254.1| prfH [Escherichia coli FVEC1412] gi|291471568|gb|EFF14051.1| peptide chain release factor H [Escherichia coli B354] gi|298280106|gb|EFI21610.1| prfH [Escherichia coli FVEC1302] gi|300357405|gb|EFJ73275.1| putative peptide chain release factor H [Escherichia coli MS 198-1] Length = 204 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + + VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAITVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|328463691|gb|EGF35277.1| peptide chain release factor 1 [Lactobacillus rhamnosus MTCC 5462] Length = 76 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + L R+ +E MS+ + Y+ L++E + +++ Y Q + ++ V Sbjct: 1 MDGLLVRYEGLEELMSDPEVISDTKRYLALSKEEGGMRDVVAAYKKYKQVLSDIKESEEV 60 Query: 66 IGDHNSDSE 74 + + + Sbjct: 61 LRESKDEDM 69 >gi|94269500|ref|ZP_01291480.1| ABC transporter related [delta proteobacterium MLMS-1] gi|93451197|gb|EAT02108.1| ABC transporter related [delta proteobacterium MLMS-1] Length = 301 Score = 47.9 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 + L+ R A +E ++++ + + + +L++EYA + + S +DQ +QE + L T Sbjct: 241 VDKLEGRKAALEKQLADPETYNRQDQFTELSKEYAEVQRRLESLYEQWDQLQQELETLQT 300 >gi|254690017|ref|ZP_05153271.1| peptide chain release factor 1 [Brucella abortus bv. 6 str. 870] Length = 35 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 23/33 (69%) Query: 325 LYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 LYKL+ V++G +D++++ L++ HQ ++ E Sbjct: 1 LYKLDRVMEGDLDELVDALISDHQTALLAELGE 33 >gi|117622538|ref|YP_851451.1| peptide chain release factor-like protein [Escherichia coli APEC O1] gi|115511662|gb|ABI99736.1| peptide chain release factor-like protein [Escherichia coli APEC O1] Length = 232 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 30 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 89 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 90 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 145 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 146 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 205 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 206 SQRRMFHHQIERGNPRRT 223 >gi|227884748|ref|ZP_04002553.1| peptide chain release factor family protein [Escherichia coli 83972] gi|300977367|ref|ZP_07173858.1| putative peptide chain release factor H [Escherichia coli MS 45-1] gi|301045877|ref|ZP_07193064.1| putative peptide chain release factor H [Escherichia coli MS 185-1] gi|331656314|ref|ZP_08357276.1| putative peptide chain release factor H [Escherichia coli TA206] gi|331681653|ref|ZP_08382286.1| putative peptide chain release factor H [Escherichia coli H299] gi|26106678|gb|AAN78863.1|AE016756_46 Peptide chain release factor homolog [Escherichia coli CFT073] gi|222032084|emb|CAP74823.1| Peptide chain release factor homolog [Escherichia coli LF82] gi|227838349|gb|EEJ48815.1| peptide chain release factor family protein [Escherichia coli 83972] gi|300302127|gb|EFJ58512.1| putative peptide chain release factor H [Escherichia coli MS 185-1] gi|300409892|gb|EFJ93430.1| putative peptide chain release factor H [Escherichia coli MS 45-1] gi|307552166|gb|ADN44941.1| peptide chain release factor-like protein [Escherichia coli ABU 83972] gi|312944860|gb|ADR25687.1| peptide chain release factor-like protein [Escherichia coli O83:H1 str. NRG 857C] gi|315295160|gb|EFU54495.1| putative peptide chain release factor H [Escherichia coli MS 153-1] gi|315300862|gb|EFU60084.1| putative peptide chain release factor H [Escherichia coli MS 16-3] gi|323191394|gb|EFZ76656.1| putative peptide chain release factor H [Escherichia coli RN587/1] gi|331054562|gb|EGI26571.1| putative peptide chain release factor H [Escherichia coli TA206] gi|331080855|gb|EGI52020.1| putative peptide chain release factor H [Escherichia coli H299] Length = 204 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVRKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|191171385|ref|ZP_03032934.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli F11] gi|300991271|ref|ZP_07179531.1| putative peptide chain release factor H [Escherichia coli MS 200-1] gi|110342064|gb|ABG68301.1| putative peptide chain release factor [Escherichia coli 536] gi|190908319|gb|EDV67909.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli F11] gi|300305588|gb|EFJ60108.1| putative peptide chain release factor H [Escherichia coli MS 200-1] gi|324015571|gb|EGB84790.1| putative peptide chain release factor H [Escherichia coli MS 60-1] Length = 204 Score = 47.9 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLSSGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|237707745|ref|ZP_04538226.1| peptide chain release factor 2 [Escherichia sp. 3_2_53FAA] gi|306813274|ref|ZP_07447467.1| peptide chain release factor-like protein [Escherichia coli NC101] gi|91070898|gb|ABE05779.1| peptide chain release factor-like protein [Escherichia coli UTI89] gi|226898955|gb|EEH85214.1| peptide chain release factor 2 [Escherichia sp. 3_2_53FAA] gi|281177449|dbj|BAI53779.1| peptide chain release factor [Escherichia coli SE15] gi|294492701|gb|ADE91457.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli IHE3034] gi|305854037|gb|EFM54476.1| peptide chain release factor-like protein [Escherichia coli NC101] gi|307628262|gb|ADN72566.1| peptide chain release factor-like protein [Escherichia coli UM146] gi|315287746|gb|EFU47149.1| putative peptide chain release factor H [Escherichia coli MS 110-3] gi|320197281|gb|EFW71897.1| peptide chain release factor-like protein [Escherichia coli WV_060327] gi|323953122|gb|EGB48990.1| RF-1 domain-containing protein [Escherichia coli H252] gi|323958696|gb|EGB54397.1| RF-1 domain-containing protein [Escherichia coli H263] gi|324010206|gb|EGB79425.1| putative peptide chain release factor H [Escherichia coli MS 57-2] Length = 204 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|312964708|ref|ZP_07778959.1| putative peptide chain release factor H [Escherichia coli 2362-75] gi|312290729|gb|EFR18607.1| putative peptide chain release factor H [Escherichia coli 2362-75] Length = 204 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + AA + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|94263448|ref|ZP_01287261.1| ABC transporter related [delta proteobacterium MLMS-1] gi|93456178|gb|EAT06317.1| ABC transporter related [delta proteobacterium MLMS-1] Length = 682 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 + L+ R A +E ++++ + + + +L++EYA + + S +DQ +QE + L T Sbjct: 622 VDKLEGRKAALEKQLADPETYNRQDQFTELSKEYAEVQRRLESLYEQWDQLQQELETLQT 681 >gi|290475750|ref|YP_003468639.1| putative peptide chain release factor [Xenorhabdus bovienii SS-2004] gi|289175072|emb|CBJ81875.1| putative peptide chain release factor (modular protein) [Xenorhabdus bovienii SS-2004] Length = 205 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 58/201 (28%), Positives = 80/201 (39%), Gaps = 11/201 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L+I A G E AL V A V +L S + ++ I G Sbjct: 2 ILLQISAAQGPDECALAVRKALERLIDEADELGIMVNILEKESGRRSRTLRSVMVAIQGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + G + VA + I +IR +T+RAS Sbjct: 62 NEQQFFERWDGTIKWICASPWRKGDGRKNWFIGVA----QFKPLQQIMESEIRFETLRAS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN T+SA+R HI +GI V SE+SQH NR A +L RL + A + Sbjct: 118 GPGGQHVNKTESAIRAVHIASGISVKVQSERSQHANRRLACLLLEHRLQQQQDMHQAQLK 177 Query: 290 SANR--KLQIGSGDRSERIRT 308 + R QI +R +RT Sbjct: 178 AERRLFHNQI---ERGNPVRT 195 >gi|170684096|ref|YP_001742396.1| peptide chain release factor-like protein [Escherichia coli SMS-3-5] gi|170521814|gb|ACB19992.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli SMS-3-5] Length = 204 Score = 47.5 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 46/201 (22%), Positives = 78/201 (38%), Gaps = 11/201 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY--KEIVATISG 169 +L++ + G E L V + A + ++ + + G Y A IS Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQ---DVAITVLETEAGRYPDTMRSALISL 58 Query: 170 RGVFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G + ES +Q + + D + IR +T+ Sbjct: 59 DGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETL 114 Query: 228 RASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 115 RSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSA 174 Query: 288 ERSANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 175 ALKSQRRMFHHQIERGNPRRT 195 >gi|213610056|ref|ZP_03369882.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|322614608|gb|EFY11537.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620127|gb|EFY16999.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623421|gb|EFY20260.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629281|gb|EFY26060.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322632001|gb|EFY28755.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322637261|gb|EFY33963.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642458|gb|EFY39060.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646289|gb|EFY42803.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652443|gb|EFY48797.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322653395|gb|EFY49728.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322660457|gb|EFY56693.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664609|gb|EFY60802.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669338|gb|EFY65488.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322670884|gb|EFY67017.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678877|gb|EFY74932.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681906|gb|EFY77931.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322688032|gb|EFY83998.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194387|gb|EFZ79582.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323197802|gb|EFZ82934.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203402|gb|EFZ88427.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206853|gb|EFZ91806.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210378|gb|EFZ95270.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323214620|gb|EFZ99371.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323223176|gb|EGA07519.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224853|gb|EGA09116.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230057|gb|EGA14177.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233795|gb|EGA17884.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238511|gb|EGA22569.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244199|gb|EGA28208.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246359|gb|EGA30342.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251985|gb|EGA35848.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323257982|gb|EGA41661.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259921|gb|EGA43552.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323265065|gb|EGA48564.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323272628|gb|EGA56035.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D + ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEQMQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|324114895|gb|EGC08861.1| RF-1 domain-containing protein [Escherichia fergusonii B253] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 75/198 (37%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIHYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +R+ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQRQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|197248567|ref|YP_002145297.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204927397|ref|ZP_03218599.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|197212270|gb|ACH49667.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|204324062|gb|EDZ09257.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D + ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEQMQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|323976247|gb|EGB71340.1| RF-1 domain-containing protein [Escherichia coli TW10509] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTSDEQEQSDAIHYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +R+ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQRQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|16759310|ref|NP_454927.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16763697|ref|NP_459312.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29142917|ref|NP_806259.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62178886|ref|YP_215303.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161615515|ref|YP_001589480.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167993332|ref|ZP_02574427.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232270|ref|ZP_02657328.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168465389|ref|ZP_02699271.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168819094|ref|ZP_02831094.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194443695|ref|YP_002039557.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194472201|ref|ZP_03078185.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198241865|ref|YP_002214270.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200389746|ref|ZP_03216357.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|207855800|ref|YP_002242451.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213025683|ref|ZP_03340130.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213161389|ref|ZP_03347099.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213416713|ref|ZP_03349857.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425142|ref|ZP_03357892.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649630|ref|ZP_03379683.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213852433|ref|ZP_03381965.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224582156|ref|YP_002635954.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|289826861|ref|ZP_06545771.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25513287|pir||AI0542 probable peptide chain release factor prfH [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16418816|gb|AAL19271.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16501601|emb|CAD08785.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Typhi] gi|29138549|gb|AAO70119.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62126519|gb|AAX64222.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161364879|gb|ABX68647.1| hypothetical protein SPAB_03287 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194402358|gb|ACF62580.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194458565|gb|EDX47404.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631774|gb|EDX50294.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197936381|gb|ACH73714.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199602191|gb|EDZ00737.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205328589|gb|EDZ15353.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333479|gb|EDZ20243.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344152|gb|EDZ30916.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206707603|emb|CAR31885.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224466683|gb|ACN44513.1| peptide chain release factor 2 [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261245540|emb|CBG23335.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267992008|gb|ACY86893.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301156930|emb|CBW16412.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312911285|dbj|BAJ35259.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320084570|emb|CBY94362.1| Peptide chain release factor 1 RF-1 [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224975|gb|EFX50036.1| Peptide chain release protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322713338|gb|EFZ04909.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323128632|gb|ADX16062.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326622014|gb|EGE28359.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332987265|gb|AEF06248.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|326789649|ref|YP_004307470.1| peptide chain release factor H [Clostridium lentocellum DSM 5427] gi|326540413|gb|ADZ82272.1| peptide chain release factor H [Clostridium lentocellum DSM 5427] Length = 195 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 58/121 (47%), Gaps = 10/121 (8%) Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247 A+ + V++L E ++ + IR +T R+ G GGQHVN ++ VR Sbjct: 69 ESPYRANCKRKNWYIDVSILEEVKKVSTEEI---IRFETFRSGGKGGQHVNKVETGVRAI 125 Query: 248 HIPTGI-MVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306 H+PTGI +V++ +SQH N+ AM L L V E+ Q+ +++ I Sbjct: 126 HMPTGIAVVSTEARSQHMNKQIAMNRLLDLLAQVNEDANQKEK------QLAWLEQNRLI 179 Query: 307 R 307 R Sbjct: 180 R 180 >gi|167553099|ref|ZP_02346849.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205322360|gb|EDZ10199.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|56414557|ref|YP_151632.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363487|ref|YP_002143124.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56128814|gb|AAV78320.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197094964|emb|CAR60501.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 204 Score = 47.1 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN +DSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKSDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|331645440|ref|ZP_08346544.1| putative peptide chain release factor H [Escherichia coli M605] gi|331045602|gb|EGI17728.1| putative peptide chain release factor H [Escherichia coli M605] Length = 232 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 30 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 89 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 90 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIHYETLRSS 145 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 146 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 205 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 206 SQRRMFHHQIERGNPRRT 223 >gi|300934927|ref|ZP_07149981.1| putative peptide chain release factor H [Escherichia coli MS 21-1] gi|300459833|gb|EFK23326.1| putative peptide chain release factor H [Escherichia coli MS 21-1] Length = 204 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNNTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|323965216|gb|EGB60674.1| RF-1 domain-containing protein [Escherichia coli M863] gi|327254578|gb|EGE66194.1| putative peptide chain release factor H [Escherichia coli STEC_7v] Length = 204 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 75/198 (37%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIHYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +R+ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGIRVKVQSERSQHANKRLARLLIAWKLEQQRQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|149197057|ref|ZP_01874109.1| peptide chain release factor-like protein [Lentisphaera araneosa HTCC2155] gi|149139603|gb|EDM28004.1| peptide chain release factor-like protein [Lentisphaera araneosa HTCC2155] Length = 203 Score = 47.1 bits (110), Expect = 0.005, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 79/184 (42%), Gaps = 4/184 (2%) Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSD-NDDGGYKEIVATISGRGV 172 ++ +G G E + +F+++ R A + E++ + ++ ++ ++ ++ G + Sbjct: 5 IQFSSGQGPRECERVLWHIFKIFCREAEDENIQCELIKAEKGSEKNSFRSLLISLEGNQL 64 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 + K G + + V A ++ L I+ + R SG Sbjct: 65 ETLRKNWEGSLLWRAPSPFRPHHKRRNWF--VQASFFAIPAKAELDLSQIKFEAQRGSGP 122 Query: 233 GGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN +A+R + P + + + E+SQ++N++ AM + L ++ E A Sbjct: 123 GGQHVNKCATAIRAYYAPLQLSILCNEERSQYRNKMLAMARVLEALNLHHSQKEGEESKA 182 Query: 292 NRKL 295 R+ Sbjct: 183 QRQK 186 >gi|197287314|ref|YP_002153186.1| peptide chain release factor [Proteus mirabilis HI4320] gi|194684801|emb|CAR46873.1| probable peptide chain release factor [Proteus mirabilis HI4320] Length = 203 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 68/182 (37%), Gaps = 5/182 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G E + V + R+ ++ + G K ++ ++ G Sbjct: 1 MLLQFSSAQGPEECCIAVEKTLNYFLTVTEQRQ-VDVIILEQEPSRYGLKSVLVSLKGAE 59 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + + SG + Q + +A + +I +I +TMRA+G Sbjct: 60 AKAIAQQWSGTVQWQCTSTLRPKHKRKNWFIGIA----YFDPPQEIQDTEILFETMRANG 115 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN T SAVR THI TGI V + + K L A + + Sbjct: 116 PGGQHVNKTSSAVRATHIATGISVKIQSQRIQHANKKLAKQLIAWHLTHYLSQQQASFNN 175 Query: 292 NR 293 R Sbjct: 176 QR 177 >gi|209917447|ref|YP_002291531.1| peptide chain release factor-like protein [Escherichia coli SE11] gi|209910706|dbj|BAG75780.1| peptide chain release factor [Escherichia coli SE11] Length = 202 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 76/197 (38%), Gaps = 5/197 (2%) Query: 113 ILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 1 MLQLSSAQGPEECCLAVKKALERLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGDN 60 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 ++ + G + + D + IR +T+R+SG Sbjct: 61 AWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSSG 116 Query: 232 SGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSA 291 GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + + Sbjct: 117 PGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLKS 176 Query: 292 NRKLQIGSGDRSERIRT 308 R++ +R RT Sbjct: 177 QRRMFHHQIERGNPRRT 193 >gi|330910076|gb|EGH38586.1| hypothetical protein ECAA86_00359 [Escherichia coli AA86] Length = 204 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 75/198 (37%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIHYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAALK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|260853488|ref|YP_003227379.1| putative peptide chain release factor RF-1 [Escherichia coli O26:H11 str. 11368] gi|260866434|ref|YP_003232836.1| putative peptide chain release factor RF-1 [Escherichia coli O111:H- str. 11128] gi|257752137|dbj|BAI23639.1| predicted peptide chain release factor RF-1 [Escherichia coli O26:H11 str. 11368] gi|257762790|dbj|BAI34285.1| predicted peptide chain release factor RF-1 [Escherichia coli O111:H- str. 11128] gi|323178470|gb|EFZ64048.1| putative peptide chain release factor H [Escherichia coli 1180] Length = 204 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGHYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SLRRMFHHQIERGNPRRT 195 >gi|56551079|ref|YP_161918.1| putative ABC transporter ATP-binding protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241761349|ref|ZP_04759437.1| ABC transporter related protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753262|ref|YP_003226155.1| ABC transporter ATP-binding protein [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56542653|gb|AAV88807.1| ABC transporter related protein [Zymomonas mobilis subsp. mobilis ZM4] gi|241374256|gb|EER63753.1| ABC transporter related protein [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258552625|gb|ACV75571.1| ABC transporter related [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 560 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I DL +RF EI M++ P+ + L E + I + + + + + Sbjct: 99 IADLVDRFNEISTLMADPPADADFDALMTEMGELQERIDTVDGW-TLDNQLEIAMEALRC 157 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELEN 95 D+++ L+ E + LE Sbjct: 158 PPGDADVTKLSGGERRRVALCRLLLEK 184 >gi|256020250|ref|ZP_05434115.1| peptide chain release factor-like protein [Shigella sp. D9] gi|332281412|ref|ZP_08393825.1| peptidyl-tRNA hydrolase domain-containing protein [Shigella sp. D9] gi|323181570|gb|EFZ66990.1| putative peptide chain release factor H [Escherichia coli 1357] gi|332103764|gb|EGJ07110.1| peptidyl-tRNA hydrolase domain-containing protein [Shigella sp. D9] Length = 204 Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 39/198 (19%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + + + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTANEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|302761410|ref|XP_002964127.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii] gi|300167856|gb|EFJ34460.1| hypothetical protein SELMODRAFT_405812 [Selaginella moellendorffii] Length = 388 Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 8/41 (19%), Positives = 18/41 (43%) Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 D R N + ++ G ++ ++ L + Q+ S +E Sbjct: 66 KDLRTNAETSDISVIMGGNLEPLLTAYLMSKQSSASASGAE 106 >gi|293418352|ref|ZP_06660787.1| peptide chain release factor H [Escherichia coli B088] gi|291324880|gb|EFE64295.1| peptide chain release factor H [Escherichia coli B088] gi|323945388|gb|EGB41442.1| RF-1 domain-containing protein [Escherichia coli H120] gi|324115579|gb|EGC09518.1| RF-1 domain-containing protein [Escherichia coli E1167] Length = 204 Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + AA + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|157156041|ref|YP_001461424.1| peptide chain release factor-like protein [Escherichia coli E24377A] gi|187732116|ref|YP_001879031.1| peptide chain release factor-like protein [Shigella boydii CDC 3083-94] gi|300817246|ref|ZP_07097464.1| putative peptide chain release factor H [Escherichia coli MS 107-1] gi|300823448|ref|ZP_07103578.1| putative peptide chain release factor H [Escherichia coli MS 119-7] gi|307313497|ref|ZP_07593118.1| peptide chain release factor H [Escherichia coli W] gi|309797856|ref|ZP_07692238.1| putative peptide chain release factor H [Escherichia coli MS 145-7] gi|331666568|ref|ZP_08367442.1| putative peptide chain release factor H [Escherichia coli TA271] gi|157078071|gb|ABV17779.1| putative peptide chain release factor H [Escherichia coli E24377A] gi|187429108|gb|ACD08382.1| peptidyl-tRNA hydrolase domain protein [Shigella boydii CDC 3083-94] gi|300524066|gb|EFK45135.1| putative peptide chain release factor H [Escherichia coli MS 119-7] gi|300530222|gb|EFK51284.1| putative peptide chain release factor H [Escherichia coli MS 107-1] gi|306906665|gb|EFN37176.1| peptide chain release factor H [Escherichia coli W] gi|308118540|gb|EFO55802.1| putative peptide chain release factor H [Escherichia coli MS 145-7] gi|320176701|gb|EFW51738.1| peptide chain release factor-like protein [Shigella dysenteriae CDC 74-1112] gi|320185048|gb|EFW59829.1| peptide chain release factor-like protein [Shigella flexneri CDC 796-83] gi|323379877|gb|ADX52145.1| peptide chain release factor H [Escherichia coli KO11] gi|331065792|gb|EGI37676.1| putative peptide chain release factor H [Escherichia coli TA271] Length = 204 Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + AA + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|331675918|ref|ZP_08376635.1| putative peptide chain release factor H [Escherichia coli H591] gi|331076478|gb|EGI47755.1| putative peptide chain release factor H [Escherichia coli H591] Length = 232 Score = 46.7 bits (109), Expect = 0.006, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 30 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 89 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 90 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 145 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 146 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 205 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 206 SQRRMFHHQIERGNPRRT 223 >gi|331671827|ref|ZP_08372623.1| putative peptide chain release factor H [Escherichia coli TA280] gi|331070816|gb|EGI42175.1| putative peptide chain release factor H [Escherichia coli TA280] Length = 232 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 11/187 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 30 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALISLDGD 89 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 90 SAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 145 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN TDSAVR TH+ +GI V SE+SQH N K L L + ++ E Sbjct: 146 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHAN-----KRLARLLIAWKLEQQQQEN 200 Query: 290 SANRKLQ 296 SA K Q Sbjct: 201 SAALKSQ 207 >gi|68061541|ref|XP_672770.1| peptide release factor [Plasmodium berghei strain ANKA] gi|56490109|emb|CAI01539.1| peptide release factor, putative [Plasmodium berghei] Length = 210 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 13/194 (6%) Query: 40 AAISPIISKISIYDQKKQEEQDLHTVIGDH---------NSDSEIRDLAQIEVLAIEKEI 90 + ++ IY Q E L + N SE++++ + + Sbjct: 9 KQLKIAWEELDIYKQLLTENMKLTLRKAEESEQIDTINFNEYSEVKEINYNIENICDSIV 68 Query: 91 RELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVL 150 ++L + + D LEI G GG EA +F +LF MYE + L+ ++ + Sbjct: 69 KQLLDIYTNFVNFNHHLDSNEVRLEIVPGVGGQEAKMFANELFSMYEHFCKLKNYECLIK 128 Query: 151 SSSDNDD--GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLP 208 ++ ++ G YK IVA I G GV+ E G+HRVQR+P S ++ TS + V + Sbjct: 129 NNKLCEEGKGIYKNIVAYIKGEGVYVDFIQEIGIHRVQRIPI--NSKKMQTSTSIVLLFD 186 Query: 209 EAAEIDVDIPLEDI 222 E + I Sbjct: 187 EKQTKEKLEKKMKI 200 >gi|157159718|ref|YP_001457036.1| peptide chain release factor-like protein [Escherichia coli HS] gi|191165713|ref|ZP_03027552.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli B7A] gi|300921975|ref|ZP_07138121.1| putative peptide chain release factor H [Escherichia coli MS 182-1] gi|301325442|ref|ZP_07218928.1| putative peptide chain release factor H [Escherichia coli MS 78-1] gi|157065398|gb|ABV04653.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli HS] gi|190904220|gb|EDV63930.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli B7A] gi|300421645|gb|EFK04956.1| putative peptide chain release factor H [Escherichia coli MS 182-1] gi|300847740|gb|EFK75500.1| putative peptide chain release factor H [Escherichia coli MS 78-1] gi|320201148|gb|EFW75731.1| peptide chain release factor-like protein [Escherichia coli EC4100B] gi|323169568|gb|EFZ55240.1| putative peptide chain release factor H [Shigella sonnei 53G] gi|324019875|gb|EGB89094.1| putative peptide chain release factor H [Escherichia coli MS 117-3] Length = 204 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALERLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|193063214|ref|ZP_03044305.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli E22] gi|194427638|ref|ZP_03060186.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli B171] gi|260842481|ref|YP_003220259.1| putative peptide chain release factor RF-1 [Escherichia coli O103:H2 str. 12009] gi|192931122|gb|EDV83725.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli E22] gi|194414408|gb|EDX30682.1| peptidyl-tRNA hydrolase domain protein [Escherichia coli B171] gi|257757628|dbj|BAI29125.1| predicted peptide chain release factor RF-1 [Escherichia coli O103:H2 str. 12009] Length = 204 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 77/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + AA + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGAIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|168240054|ref|ZP_02664986.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449085|ref|YP_002044299.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197263075|ref|ZP_03163149.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|194407389|gb|ACF67608.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197241330|gb|EDY23950.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205339954|gb|EDZ26718.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 204 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLVSGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|194432592|ref|ZP_03064878.1| peptidyl-tRNA hydrolase domain protein [Shigella dysenteriae 1012] gi|194419153|gb|EDX35236.1| peptidyl-tRNA hydrolase domain protein [Shigella dysenteriae 1012] gi|320178936|gb|EFW53898.1| peptide chain release factor-like protein [Shigella boydii ATCC 9905] gi|332085764|gb|EGI90928.1| putative peptide chain release factor H [Shigella dysenteriae 155-74] gi|332094999|gb|EGJ00038.1| putative peptide chain release factor H [Shigella boydii 5216-82] Length = 204 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 76/198 (38%), Gaps = 5/198 (2%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALISLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + + D IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGIGRFTADEQGQSDA----IRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERS 290 G GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ + Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQENSAVLK 177 Query: 291 ANRKLQIGSGDRSERIRT 308 + R++ +R RT Sbjct: 178 SQRRMFHHQIERGNPRRT 195 >gi|323938779|gb|EGB35025.1| RF-1 domain-containing protein [Escherichia coli E1520] Length = 185 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 32 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 87 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + +R +T+R+SG GGQHVN TDSAVR TH+ TGI V + R ++L A + Sbjct: 88 DAVRYETLRSSGPGGQHVNKTDSAVRATHLATGISVKVQSERSQHANKRLARLLIAWRLE 147 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 148 QQQQENSAALKSQRRMIHHQIERGNPRRT 176 >gi|168238579|ref|ZP_02663637.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735122|ref|YP_002113341.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710624|gb|ACF89845.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288612|gb|EDY27989.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 204 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 38/99 (38%), Positives = 52/99 (52%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D + ++I +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEQMQSDEIHFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|104779685|ref|YP_606183.1| peptide chain release factor-like protein [Pseudomonas entomophila L48] gi|95108672|emb|CAK13366.1| putative peptide chain release factor [Pseudomonas entomophila L48] Length = 206 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 54/226 (23%), Positives = 82/226 (36%), Gaps = 30/226 (13%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGY-KEIVATISGR 170 +L++ A G E AL V + A + V +L G + ++ + G Sbjct: 2 ILLQLSAAQGPDECALAVAKALLRLQAEADAQAVAVRILEEEPGPRRGTLRSVLLALDGE 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 +G + A A +I +T+R+S Sbjct: 62 QAERLADHWTGSLQWTCSSPYRPGHARKNWFFGGARFAPPAPELA----SEIHFETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVNTTDSAVR TH+ +G+ V SE+SQH N+ A+ ++ RL + + R Sbjct: 118 GPGGQHVNTTDSAVRATHLASGVSVKVQSERSQHANKRLALLLIGQRLAQQAEQVDSELR 177 Query: 290 SANRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGY 335 + R F HRI V +G Sbjct: 178 AERR----------------LFH------HRI--ERGNPRRVFRGE 199 >gi|215485384|ref|YP_002327815.1| peptide chain release factor-like protein [Escherichia coli O127:H6 str. E2348/69] gi|215263456|emb|CAS07777.1| predicted peptide chain release factor [Escherichia coli O127:H6 str. E2348/69] Length = 193 Score = 46.3 bits (108), Expect = 0.007, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 75/187 (40%), Gaps = 11/187 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLF-RMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGR 170 +L++ + G E L V R+ + A + + + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEAARQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + IR +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIRYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN TDSAVR TH+ +GI V SE+SQH N K L L + ++ E Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHAN-----KRLARLLIAWKLEQQQQEN 172 Query: 290 SANRKLQ 296 SA K Q Sbjct: 173 SAALKSQ 179 >gi|313111591|ref|ZP_07797390.1| putative peptide chain release factor [Pseudomonas aeruginosa 39016] gi|310883892|gb|EFQ42486.1| putative peptide chain release factor [Pseudomonas aeruginosa 39016] Length = 204 Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 15/204 (7%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L++ A G +E L V F AA +VEV+ + + Sbjct: 2 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVIEEVAGERPRTWRSLLLGLRGT 61 Query: 172 VFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + +Q + A +IR +T+R+ Sbjct: 62 AAEALAERWCGG-IQWICPSPYRARHARKNWFIGAE----RLAAPPASLEGEIRFETLRS 116 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D Sbjct: 117 SGPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADAL 176 Query: 289 RSANRKLQ--IGSGD-----RSER 305 R+ R+ I G R ER Sbjct: 177 RAERRRAHGRISRGAARRVFRGER 200 >gi|224092502|ref|XP_002309637.1| predicted protein [Populus trichocarpa] gi|222855613|gb|EEE93160.1| predicted protein [Populus trichocarpa] Length = 669 Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 32/73 (43%), Gaps = 6/73 (8%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLH 63 + KQ+ +L R+ E+E + S + L +E+ ++ + + Q +E+ ++ Sbjct: 495 TRKQLEELSKRYEELEAK-----SKADFKFLAKEFKSLKSSQTTLKQELSQSLKEKSEVE 549 Query: 64 TVIGDHNSDSEIR 76 ++ + E Sbjct: 550 KLLYEEREMKEHE 562 >gi|325498389|gb|EGC96248.1| prfH [Escherichia fergusonii ECD227] Length = 204 Score = 46.3 bits (108), Expect = 0.008, Method: Composition-based stats. Identities = 48/187 (25%), Positives = 74/187 (39%), Gaps = 11/187 (5%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVATISGR 170 +L++ + G E L V + A + V VL + + + ++ G Sbjct: 2 ILLQLSSAQGPEECCLAVKKALDRLIKEATRQDVAVTVLETETGRYSDTLRSALVSLDGD 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 ++ + G + + D + I +T+R+S Sbjct: 62 NAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQSDAIHYETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVN TDSAVR TH+ +GI V SE+SQH N K L L + ++ E Sbjct: 118 GPGGQHVNKTDSAVRATHLASGISVKVQSERSQHAN-----KRLARLLIAWKLEQQQQEN 172 Query: 290 SANRKLQ 296 SA K Q Sbjct: 173 SAALKSQ 179 >gi|212697039|ref|ZP_03305167.1| hypothetical protein ANHYDRO_01604 [Anaerococcus hydrogenalis DSM 7454] gi|212675814|gb|EEB35421.1| hypothetical protein ANHYDRO_01604 [Anaerococcus hydrogenalis DSM 7454] Length = 115 Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 22/68 (32%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L IE + D K E A +S + K+E +D +I Sbjct: 28 DNLFKEIKNIEKETLKENFWDDSQKAQEIMADLSDKKDDYKTFINLKEELEDQSDLIDII 87 Query: 70 NSDSEIRD 77 +E D Sbjct: 88 EETNEELD 95 >gi|238913295|ref|ZP_04657132.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 204 Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 39/99 (39%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H + D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYIGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAALKSERR 181 >gi|323943355|gb|EGB39508.1| RF-1 domain-containing protein [Escherichia coli E482] Length = 185 Score = 46.0 bits (107), Expect = 0.008, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 32 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 87 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 88 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 147 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 148 QQQQENSAALKSQRRMFHHQIERGNPRRT 176 >gi|300947294|ref|ZP_07161497.1| putative peptide chain release factor H [Escherichia coli MS 116-1] gi|300955685|ref|ZP_07168035.1| putative peptide chain release factor H [Escherichia coli MS 175-1] gi|301643547|ref|ZP_07243589.1| putative peptide chain release factor H [Escherichia coli MS 146-1] gi|260450569|gb|ACX40991.1| peptide chain release factor H [Escherichia coli DH1] gi|300317436|gb|EFJ67220.1| putative peptide chain release factor H [Escherichia coli MS 175-1] gi|300453095|gb|EFK16715.1| putative peptide chain release factor H [Escherichia coli MS 116-1] gi|301078047|gb|EFK92853.1| putative peptide chain release factor H [Escherichia coli MS 146-1] Length = 178 Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 25 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 80 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 81 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 140 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 141 QQQQENSAALKSQRRMFHHQIERGNPRRT 169 >gi|218894572|ref|YP_002443442.1| peptide chain release factor-like protein [Pseudomonas aeruginosa LESB58] gi|218774801|emb|CAW30619.1| probable peptide chain release factor [Pseudomonas aeruginosa LESB58] Length = 204 Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 81/203 (39%), Gaps = 13/203 (6%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT-ISGR 170 +L++ A G +E L V F AA +VEVL + + + G Sbjct: 2 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVLEEVTGERPRTWRSLLLGLRGI 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + A +IR +T+R+S Sbjct: 62 AAEALAEHWCGGIQWICTSPYRARHARKNWFIGAE----RFAAPPASLEGEIRFETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D R Sbjct: 118 GPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADALR 177 Query: 290 SANRKLQ--IGSGD-----RSER 305 + R+ I G R ER Sbjct: 178 AERRQAHGRISRGAARRVFRGER 200 >gi|323963546|gb|EGB59104.1| RF-1 domain-containing protein [Escherichia coli H489] Length = 185 Score = 46.0 bits (107), Expect = 0.009, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 32 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEKEQS 87 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 88 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 147 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 148 QQQQENSAALKSQRRMFHHQIERGNPRRT 176 >gi|300929514|ref|ZP_07144981.1| putative peptide chain release factor H [Escherichia coli MS 187-1] gi|300462556|gb|EFK26049.1| putative peptide chain release factor H [Escherichia coli MS 187-1] gi|323972417|gb|EGB67624.1| RF-1 domain-containing protein [Escherichia coli TA007] Length = 178 Score = 46.0 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 25 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEKEQS 80 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 81 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 140 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 141 QQQQENSAALKSQRRMFHHQIERGNPRRT 169 >gi|183600289|ref|ZP_02961782.1| hypothetical protein PROSTU_03848 [Providencia stuartii ATCC 25827] gi|188020079|gb|EDU58119.1| hypothetical protein PROSTU_03848 [Providencia stuartii ATCC 25827] Length = 202 Score = 46.0 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 44/177 (24%), Positives = 71/177 (40%), Gaps = 6/177 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G E + V + A R+ + + G K + + G G Sbjct: 1 MLLQFSSAQGPEECCIAVEKALACFFIEAKKRE-VMVNTLETVASKHGLKSALVALEGHG 59 Query: 172 VFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 + SG + Q + V I DI + ++A G Sbjct: 60 AEELAQLWSGTIQWQCQSPLRPKHKRKNWFINV----IRFSPIQTIEESDIEFEFIKAQG 115 Query: 232 SGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287 GGQHVN T SAVR H+ TGI V SE+SQH N+ A +++ RL + + ++ + Sbjct: 116 PGGQHVNKTCSAVRAKHLATGISVKVQSERSQHANKKLAKQLIYWRLNEYQDQQASA 172 >gi|15799941|ref|NP_285953.1| peptide chain release factor-like protein [Escherichia coli O157:H7 EDL933] gi|15829517|ref|NP_308290.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. Sakai] gi|82775830|ref|YP_402177.1| peptide chain release factor-like protein [Shigella dysenteriae Sd197] gi|168750219|ref|ZP_02775241.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4113] gi|168757264|ref|ZP_02782271.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4401] gi|168763477|ref|ZP_02788484.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4501] gi|168770034|ref|ZP_02795041.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4486] gi|168776124|ref|ZP_02801131.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4196] gi|168782997|ref|ZP_02808004.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4076] gi|168789709|ref|ZP_02814716.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC869] gi|168800326|ref|ZP_02825333.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC508] gi|195938639|ref|ZP_03084021.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. EC4024] gi|208806453|ref|ZP_03248790.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4206] gi|208812358|ref|ZP_03253687.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4045] gi|208821267|ref|ZP_03261587.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4042] gi|209398288|ref|YP_002268863.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4115] gi|217325768|ref|ZP_03441852.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. TW14588] gi|254791396|ref|YP_003076233.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. TW14359] gi|261223709|ref|ZP_05937990.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. FRIK2000] gi|261255882|ref|ZP_05948415.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. FRIK966] gi|291281080|ref|YP_003497898.1| putative peptide chain release factor [Escherichia coli O55:H7 str. CB9615] gi|309786024|ref|ZP_07680653.1| putative peptide chain release factor H [Shigella dysenteriae 1617] gi|12513007|gb|AAG54561.1|AE005201_14 probable peptide chain release factor [Escherichia coli O157:H7 str. EDL933] gi|13359720|dbj|BAB33686.1| probable peptide chain release factor [Escherichia coli O157:H7 str. Sakai] gi|81239978|gb|ABB60688.1| probable peptide chain release factor [Shigella dysenteriae Sd197] gi|187768441|gb|EDU32285.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4196] gi|188015585|gb|EDU53707.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4113] gi|188999642|gb|EDU68628.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4076] gi|189355734|gb|EDU74153.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4401] gi|189361064|gb|EDU79483.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4486] gi|189366361|gb|EDU84777.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4501] gi|189370775|gb|EDU89191.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC869] gi|189377360|gb|EDU95776.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC508] gi|208726254|gb|EDZ75855.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4206] gi|208733635|gb|EDZ82322.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4045] gi|208741390|gb|EDZ89072.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4042] gi|209159688|gb|ACI37121.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. EC4115] gi|209745314|gb|ACI70964.1| probable peptide chain release factor [Escherichia coli] gi|209745316|gb|ACI70965.1| probable peptide chain release factor [Escherichia coli] gi|209745318|gb|ACI70966.1| probable peptide chain release factor [Escherichia coli] gi|209745320|gb|ACI70967.1| probable peptide chain release factor [Escherichia coli] gi|209745322|gb|ACI70968.1| probable peptide chain release factor [Escherichia coli] gi|217321989|gb|EEC30413.1| putative peptide chain release factor H [Escherichia coli O157:H7 str. TW14588] gi|254590796|gb|ACT70157.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. TW14359] gi|290760953|gb|ADD54914.1| Probable peptide chain release factor [Escherichia coli O55:H7 str. CB9615] gi|308926135|gb|EFP71613.1| putative peptide chain release factor H [Shigella dysenteriae 1617] gi|320190210|gb|EFW64860.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. EC1212] gi|320638171|gb|EFX07920.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. G5101] gi|320643253|gb|EFX12452.1| peptide chain release factor-like protein [Escherichia coli O157:H- str. 493-89] gi|320648900|gb|EFX17518.1| peptide chain release factor-like protein [Escherichia coli O157:H- str. H 2687] gi|320660248|gb|EFX27758.1| peptide chain release factor-like protein [Escherichia coli O55:H7 str. USDA 5905] gi|320665014|gb|EFX32124.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. LSU-61] gi|326338757|gb|EGD62576.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. 1044] gi|326342456|gb|EGD66236.1| peptide chain release factor-like protein [Escherichia coli O157:H7 str. 1125] Length = 166 Score = 46.0 bits (107), Expect = 0.010, Method: Composition-based stats. Identities = 34/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICLSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R SG GGQHVN TDSAVR TH+ TGI V + R ++L A + Sbjct: 69 DAIRYETLRPSGPGGQHVNKTDSAVRATHLATGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|218703550|ref|YP_002411069.1| peptide chain release factor-like protein [Escherichia coli UMN026] gi|218430647|emb|CAR11515.1| putative peptide chain release factor [Escherichia coli UMN026] Length = 166 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|15600663|ref|NP_254157.1| peptide chain release factor-like protein [Pseudomonas aeruginosa PAO1] gi|254237846|ref|ZP_04931169.1| hypothetical protein PACG_03946 [Pseudomonas aeruginosa C3719] gi|254243022|ref|ZP_04936344.1| hypothetical protein PA2G_03810 [Pseudomonas aeruginosa 2192] gi|9951802|gb|AAG08855.1|AE004959_11 probable peptide chain release factor [Pseudomonas aeruginosa PAO1] gi|126169777|gb|EAZ55288.1| hypothetical protein PACG_03946 [Pseudomonas aeruginosa C3719] gi|126196400|gb|EAZ60463.1| hypothetical protein PA2G_03810 [Pseudomonas aeruginosa 2192] Length = 204 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 15/204 (7%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L++ A G +E L V F AA +VEV+ + + Sbjct: 2 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVIEEVAGERPRTWRSLLLGLRGT 61 Query: 172 VFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + +Q + A +IR +T+R+ Sbjct: 62 AAEALAERWCGG-IQWICPSPYRARHARKNWFIGAE----RFAAPPASLEGEIRFETLRS 116 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D Sbjct: 117 SGPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADAL 176 Query: 289 RSANRKLQ--IGSGD-----RSER 305 R+ R+ I G R ER Sbjct: 177 RAERRRAHGRISRGAARRVFRGER 200 >gi|116053620|ref|YP_793947.1| peptide chain release factor-like protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115588841|gb|ABJ14856.1| putative peptide chain release factor [Pseudomonas aeruginosa UCBPP-PA14] Length = 204 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 56/203 (27%), Positives = 81/203 (39%), Gaps = 13/203 (6%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT-ISGR 170 +L++ A G +E L V F AA +VEVL + + + G Sbjct: 2 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVLEEVAGERPRTWRSLLLGLRGI 61 Query: 171 GVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + A +IR +T+R+S Sbjct: 62 AAEALAEHWCGGIQWICTSPYRARHARKNWFIGAE----RFAAPPASLEGEIRFETLRSS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANER 289 G GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D R Sbjct: 118 GPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADALR 177 Query: 290 SANRKLQ--IGSGD-----RSER 305 + R+ I G R ER Sbjct: 178 AERRQAHGRISRGAARRVFRGER 200 >gi|107104573|ref|ZP_01368491.1| hypothetical protein PaerPA_01005652 [Pseudomonas aeruginosa PACS2] Length = 207 Score = 45.6 bits (106), Expect = 0.011, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 15/204 (7%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L++ A G +E L V F AA +VEV+ + + Sbjct: 5 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVIEEVAGERPRTWRSLLLGLRGT 64 Query: 172 VFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + +Q + A +IR +T+R+ Sbjct: 65 AAEALAERWCGG-IQWICPSPYRARHARKNWFIGAE----RFAAPPASLEGEIRFETLRS 119 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D Sbjct: 120 SGPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADAL 179 Query: 289 RSANRKLQ--IGSGD-----RSER 305 R+ R+ I G R ER Sbjct: 180 RAERRRAHGRISRGAARRVFRGER 203 >gi|320654680|gb|EFX22681.1| peptide chain release factor-like protein [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 166 Score = 45.6 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICLSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R SG GGQHVN TD AVR TH+ TGI V + R ++L A + Sbjct: 69 DAIRYETLRPSGPGGQHVNKTDLAVRATHLATGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|169838093|ref|ZP_02871281.1| hypothetical protein cdivTM_13518 [candidate division TM7 single-cell isolate TM7a] Length = 38 Score = 45.6 bits (106), Expect = 0.012, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 23/34 (67%) Query: 323 LTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSAS 356 +TL++LE +L G +D++I+ L+ QA+++ Sbjct: 1 MTLHRLEGILDGDLDEMIDALIAYEQAELLKEVG 34 >gi|162138281|ref|YP_668200.2| peptide chain release factor-like protein [Escherichia coli 536] Length = 166 Score = 45.6 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLSSGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|332829815|gb|EGK02457.1| peptide chain release factor H [Dysgonomonas gadei ATCC BAA-286] Length = 207 Score = 45.6 bits (106), Expect = 0.013, Method: Composition-based stats. Identities = 45/188 (23%), Positives = 70/188 (37%), Gaps = 4/188 (2%) Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVAT 166 + L+I +G G +E V A VEV+ + Sbjct: 1 MRNCKIYLQITSGRGPAECGRVVALTVEKILTQAKKIGLDVEVVEREPGEINRTLFSAVI 60 Query: 167 -ISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 I G ++ G + + V + +VD Sbjct: 61 SIEGLKADEIVREWEGTIQWIAQSPYRIYHKRKNWFVGVRSFTIPDKHNVDEREISY--Q 118 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 T+RASG GGQHVN T+SAVR THI +G + S ++SQ QN+ A++ L +L ++ Sbjct: 119 TLRASGPGGQHVNKTESAVRATHISSGLSVTASDQRSQLQNKKLAVERLLIKLAAWNMEQ 178 Query: 285 MANERSAN 292 + N Sbjct: 179 NMQKAQEN 186 >gi|60679074|gb|AAX33818.1| putative peptide chain release factor 2 [Campylobacter jejuni subsp. jejuni] Length = 40 Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 21/40 (52%) Query: 311 FSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 F ++ D+R +++ +L G I +I +L A +A+ Sbjct: 1 FPYQQVKDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 40 >gi|89107109|ref|AP_000889.1| predicted peptide chain release factor [Escherichia coli str. K-12 substr. W3110] gi|256024120|ref|ZP_05437985.1| peptide chain release factor-like protein [Escherichia sp. 4_1_40B] gi|307136901|ref|ZP_07496257.1| peptide chain release factor-like protein [Escherichia coli H736] gi|331640765|ref|ZP_08341900.1| putative peptide chain release factor H [Escherichia coli H736] gi|115311624|sp|P28369|RFH_ECOLI RecName: Full=Putative peptide chain release factor homolog; Short=RF-H gi|1552804|gb|AAB08656.1| PrfH [Escherichia coli] gi|85674391|dbj|BAA77905.2| predicted peptide chain release factor [Escherichia coli str. K12 substr. W3110] gi|315134921|dbj|BAJ42080.1| peptide chain release factor 2 [Escherichia coli DH1] gi|315616801|gb|EFU97418.1| putative peptide chain release factor H [Escherichia coli 3431] gi|331037563|gb|EGI09783.1| putative peptide chain release factor H [Escherichia coli H736] Length = 166 Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|161486311|ref|NP_752319.2| peptide chain release factor-like protein [Escherichia coli CFT073] gi|162138491|ref|YP_539310.2| peptide chain release factor-like protein [Escherichia coli UTI89] gi|218557192|ref|YP_002390105.1| peptide chain release factor-like protein [Escherichia coli S88] gi|218688128|ref|YP_002396340.1| peptide chain release factor-like protein [Escherichia coli ED1a] gi|218363961|emb|CAR01626.1| putative peptide chain release factor [Escherichia coli S88] gi|218425692|emb|CAR06484.1| putative peptide chain release factor [Escherichia coli ED1a] Length = 166 Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|331651168|ref|ZP_08352193.1| putative peptide chain release factor H [Escherichia coli M718] gi|331050909|gb|EGI22961.1| putative peptide chain release factor H [Escherichia coli M718] Length = 166 Score = 45.2 bits (105), Expect = 0.014, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 59/149 (39%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETQRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|194438235|ref|ZP_03070327.1| putative peptide chain release factor H [Escherichia coli 101-1] gi|253774739|ref|YP_003037570.1| peptide chain release factor-like protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254160350|ref|YP_003043458.1| peptide chain release factor-like protein [Escherichia coli B str. REL606] gi|297520538|ref|ZP_06938924.1| peptide chain release factor-like protein [Escherichia coli OP50] gi|312970362|ref|ZP_07784543.1| putative peptide chain release factor H [Escherichia coli 1827-70] gi|194422899|gb|EDX38894.1| putative peptide chain release factor H [Escherichia coli 101-1] gi|242376066|emb|CAQ30751.1| prfH [Escherichia coli BL21(DE3)] gi|253325783|gb|ACT30385.1| peptide chain release factor H [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253972251|gb|ACT37922.1| peptide chain release factor 2 [Escherichia coli B str. REL606] gi|253976460|gb|ACT42130.1| peptide chain release factor 2 [Escherichia coli BL21(DE3)] gi|310337011|gb|EFQ02149.1| putative peptide chain release factor H [Escherichia coli 1827-70] gi|332341589|gb|AEE54923.1| peptide chain release factor-like protein PrfH [Escherichia coli UMNK88] Length = 166 Score = 45.2 bits (105), Expect = 0.015, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEKEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|168261270|ref|ZP_02683243.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349709|gb|EDZ36340.1| putative peptide chain release factor H [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 204 Score = 45.2 bits (105), Expect = 0.016, Method: Composition-based stats. Identities = 40/99 (40%), Positives = 53/99 (53%), Gaps = 1/99 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLVSGISV 142 Query: 256 -TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR 293 SE+SQH N+ A ++ RL + A +S R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNECAVLKSERR 181 >gi|298345317|ref|YP_003718004.1| ABC transporter ATP-binding protein [Mobiluncus curtisii ATCC 43063] gi|298235378|gb|ADI66510.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii ATCC 43063] Length = 560 Score = 45.2 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI +M++ + + L EE + I +D + + + Sbjct: 96 IKSKLDRYNEISAQMADPDA--DFDALMEEMGQLQEAIDAADAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 +D++++ Sbjct: 153 PPADADVK 160 >gi|148988471|ref|ZP_01819918.1| peptide chain release factor 1 [Streptococcus pneumoniae SP6-BS73] gi|147926152|gb|EDK77226.1| peptide chain release factor 1 [Streptococcus pneumoniae SP6-BS73] Length = 67 Score = 45.2 bits (105), Expect = 0.017, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQE 58 + Q+ +++R+ E+ +S+ V +++L++E A+ + Y Q Q Sbjct: 1 MNIYDQLQAVEDRYEELGELLSDPDVVSDTKRFMELSKEEASNRDTVIAYREYKQVLQN 59 >gi|302791615|ref|XP_002977574.1| hypothetical protein SELMODRAFT_417426 [Selaginella moellendorffii] gi|300154944|gb|EFJ21578.1| hypothetical protein SELMODRAFT_417426 [Selaginella moellendorffii] Length = 207 Score = 44.8 bits (104), Expect = 0.018, Method: Composition-based stats. Identities = 32/87 (36%), Positives = 52/87 (59%), Gaps = 3/87 (3%) Query: 192 EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPT 251 E G V +++A ++ + ++DT RA+G GGQH N T+SAVR+ H+PT Sbjct: 21 EGDGDVESNSAATSIAYLRMSERDLV--AQCKMDTFRATGPGGQHRNKTESAVRLKHLPT 78 Query: 252 GIM-VTSSEKSQHQNRLRAMKVLRARL 277 G++ S ++SQH+NR A++ LR + Sbjct: 79 GLVSQASEDRSQHRNRDSAVQRLRHTI 105 >gi|315656349|ref|ZP_07909238.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492908|gb|EFU82510.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 560 Score = 44.8 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI +M++ + + L EE + I +D + + + Sbjct: 96 IKAKLDRYNEISAQMADPDA--DFDALMEEMGQLQEAIDAADAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 +D++++ Sbjct: 153 PPADADVK 160 >gi|169840002|ref|ZP_02873190.1| peptide chain release factor 2 [candidate division TM7 single-cell isolate TM7a] Length = 86 Score = 44.8 bits (104), Expect = 0.020, Method: Composition-based stats. Identities = 40/84 (47%), Positives = 58/84 (69%), Gaps = 1/84 (1%) Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRA 269 +V+I +D+RID R+ G GGQ VNTTDSAVRITH+PTGI V +E+SQ QN+ A Sbjct: 1 TTDEVNINDKDLRIDVYRSGGRGGQGVNTTDSAVRITHLPTGITVAIQNERSQIQNKETA 60 Query: 270 MKVLRARLYDVERKRMANERSANR 293 +K+LR++L ++ ++ A + R Sbjct: 61 LKILRSKLAQIQTEQHAETINDLR 84 >gi|315655737|ref|ZP_07908635.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii ATCC 51333] gi|315489801|gb|EFU79428.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii ATCC 51333] Length = 560 Score = 44.8 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI +M++ + + L EE + I +D + + + Sbjct: 96 IKAKLDRYNEISAQMADPDA--DFDALMEEMGQLQEAIDAADAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 +D++++ Sbjct: 153 PPADADVK 160 >gi|304390874|ref|ZP_07372826.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304325757|gb|EFL93003.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 560 Score = 44.8 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI +M++ + + L EE + I +D + + + Sbjct: 96 IKAKLDRYNEISAQMADPDA--DFDALMEEMGQLQEAIDAADAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 +D++++ Sbjct: 153 PPADADVK 160 >gi|296392334|ref|ZP_06881809.1| peptide chain release factor-like protein [Pseudomonas aeruginosa PAb1] Length = 204 Score = 44.8 bits (104), Expect = 0.021, Method: Composition-based stats. Identities = 54/204 (26%), Positives = 79/204 (38%), Gaps = 15/204 (7%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L++ A G +E L V F AA +VEV+ + + Sbjct: 2 ILLQLSAAQGPAECCLAVAKAFERLCLEAAQAGVEVEVIEEVAGERSRTWRSLLLGLRGT 61 Query: 172 VFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + +Q + A +IR +T+R+ Sbjct: 62 AAEALAERWCGG-IQWICPSPYRARHARKNWFIGAE----RFAAPPASLEGEIRFETLRS 116 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMANE 288 SG GGQHVNTTDSAVR TH+ +GI V S++SQH N+ A+ ++ RL D Sbjct: 117 SGPGGQHVNTTDSAVRATHLASGISVRVQSQRSQHANKRLAILLIARRLADQASSAADAL 176 Query: 289 RSANRKLQ--IGSGD-----RSER 305 R+ R+ I G R ER Sbjct: 177 RAERRQAHGRISRGAARRVFRGER 200 >gi|218550059|ref|YP_002383850.1| peptide chain release factor-like protein [Escherichia fergusonii ATCC 35469] gi|218357600|emb|CAQ90239.1| putative peptide chain release factor [Escherichia fergusonii ATCC 35469] Length = 166 Score = 44.8 bits (104), Expect = 0.022, Method: Composition-based stats. Identities = 40/138 (28%), Positives = 59/138 (42%), Gaps = 10/138 (7%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V SE+SQH N K L L Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHAN-----KRLARLLI 123 Query: 279 DVERKRMANERSANRKLQ 296 + ++ E SA K Q Sbjct: 124 AWKLEQQQQENSAALKSQ 141 >gi|218698820|ref|YP_002406449.1| peptide chain release factor-like protein [Escherichia coli IAI39] gi|218368806|emb|CAR16554.1| putative peptide chain release factor [Escherichia coli IAI39] Length = 166 Score = 44.8 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNNTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAALKSQRRMFHHQIERGNPRRT 157 >gi|322693735|gb|EFY85585.1| myosin class II heavy chain [Metarhizium acridum CQMa 102] Length = 2258 Score = 44.8 bits (104), Expect = 0.023, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 7/97 (7%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E +S+S DA K+++ IS + + D Sbjct: 1987 IMVLQEQLQAREQRIEELEQSLSKSD-PDAAAKISKR----DDEISWLRELLAVR--HSD 2039 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 L +I + D RD + + + ++ E E Sbjct: 2040 LQDIISALSGDHYDRDTVKDAAIRLRANLQMEEQERE 2076 >gi|77415301|ref|ZP_00791262.1| peptide chain release factor 1 [Streptococcus agalactiae 515] gi|77158648|gb|EAO69998.1| peptide chain release factor 1 [Streptococcus agalactiae 515] Length = 53 Score = 44.4 bits (103), Expect = 0.026, Method: Composition-based stats. Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 3/53 (5%) Query: 15 RFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 R+ E+ +S+ V +++L+ E A ++ Y Q D Sbjct: 1 RYEELGELLSDPDVVSDTKRFMELSREEANTRETVTAYREYKQVISNISDAEE 53 >gi|74310877|ref|YP_309296.1| peptide chain release factor-like protein [Shigella sonnei Ss046] gi|82542839|ref|YP_406786.1| peptide chain release factor-like protein [Shigella boydii Sb227] gi|188494291|ref|ZP_03001561.1| putative peptide chain release factor H [Escherichia coli 53638] gi|73854354|gb|AAZ87061.1| probable peptide chain release factor [Shigella sonnei Ss046] gi|81244250|gb|ABB64958.1| probable peptide chain release factor [Shigella boydii Sb227] gi|188489490|gb|EDU64593.1| putative peptide chain release factor H [Escherichia coli 53638] gi|323171088|gb|EFZ56737.1| putative peptide chain release factor H [Escherichia coli LT-68] gi|332098554|gb|EGJ03520.1| putative peptide chain release factor H [Shigella boydii 3594-74] Length = 166 Score = 44.4 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALVSLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|218693719|ref|YP_002401386.1| peptide chain release factor-like protein [Escherichia coli 55989] gi|218350451|emb|CAU96139.1| putative peptide chain release factor [Escherichia coli 55989] Length = 166 Score = 44.4 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|322712149|gb|EFZ03722.1| myosin class II heavy chain (MHC), putative [Metarhizium anisopliae ARSEF 23] Length = 2286 Score = 44.4 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 7/97 (7%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E +S+S DA K+++ IS + + D Sbjct: 2015 IMVLQEQLQAREQRIEELEQSLSKSD-PDAAAKISKR----DDEISWLRELLAVR--HSD 2067 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 L +I + D RD + + + ++ E E Sbjct: 2068 LQDIISALSGDHYDRDTIKDAAIRLRANLQMEEQERE 2104 >gi|297183730|gb|ADI19854.1| protein chain release factor a [uncultured alpha proteobacterium EB000_46D07] Length = 90 Score = 44.4 bits (103), Expect = 0.028, Method: Composition-based stats. Identities = 35/84 (41%), Positives = 53/84 (63%) Query: 75 IRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFR 134 + +++ + ++ ++ + LLLPKD DD ++ ILE+RAGTGG EAALF +LF Sbjct: 5 CWKWRRPKLIFXKAQLPFAKDALQLLLLPKDKDDSRNAILEVRAGTGGDEAALFASNLFS 64 Query: 135 MYERYAALRKWKVEVLSSSDNDDG 158 MY+R+AA WK EV+ S+ G Sbjct: 65 MYQRFAAKHGWKFEVMEVSETGIG 88 >gi|218552840|ref|YP_002385753.1| peptide chain release factor-like protein [Escherichia coli IAI1] gi|218359608|emb|CAQ97149.1| putative peptide chain release factor [Escherichia coli IAI1] Length = 166 Score = 44.4 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|207093409|ref|ZP_03241196.1| peptide chain release factor 2 [Helicobacter pylori HPKX_438_AG0C1] Length = 111 Score = 44.4 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +K IE + +K +E ++ ++ E +L + Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKDSLDESVELFELA 86 Query: 67 GDHNSD 72 + N + Sbjct: 87 QNDNDE 92 >gi|205351639|ref|YP_002225440.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205271420|emb|CAR36228.1| putative peptide chain release factor [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326626670|gb|EGE33013.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 204 Score = 44.4 bits (103), Expect = 0.030, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 53/112 (47%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLVSGISV 142 Query: 256 TSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 + R ++L A + +R+ + R+L +R +R Sbjct: 143 KVQSERSQHANKRLARLLIAWRLEQQRQNGCAALKSERRLFHHQIERGNPLR 194 >gi|323160301|gb|EFZ46254.1| putative peptide chain release factor H [Escherichia coli E128010] Length = 166 Score = 44.0 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGAIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSQRRMFHHQIERGNPRRT 157 >gi|302866524|ref|YP_003835161.1| peptide chain release factor H [Micromonospora aurantiaca ATCC 27029] gi|315502934|ref|YP_004081821.1| peptide chain release factor h [Micromonospora sp. L5] gi|302569383|gb|ADL45585.1| peptide chain release factor H [Micromonospora aurantiaca ATCC 27029] gi|315409553|gb|ADU07670.1| peptide chain release factor H [Micromonospora sp. L5] Length = 201 Score = 44.0 bits (102), Expect = 0.031, Method: Composition-based stats. Identities = 41/161 (25%), Positives = 62/161 (38%), Gaps = 6/161 (3%) Query: 122 GSEAALFVGDLFRMYERY---AALRKWKVEVLSSSDNDDGG-YKEIVATISGRGVFSRMK 177 G A L R+ R AA R + E + + D G Y+ ++ I+G G + Sbjct: 9 GRGPAECAWALARLLSRLEGEAARRGLRTERVETVPGDRAGTYRSVLVRITGAGAEAFAA 68 Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHV 237 +G Q T + D+ R G GGQH Sbjct: 69 GWTGTLCWQAPSPYRTGHGRKNWYVTARTCRTDVVVTP-FHEADVEFVPCRTGGPGGQHR 127 Query: 238 NTTDSAVRITHIPT-GIMVTSSEKSQHQNRLRAMKVLRARL 277 N +AVR TH P+ +V +E+ H NR A+++LR R+ Sbjct: 128 NKASTAVRATHRPSGRTVVVDTERHLHLNRRIAVELLRQRI 168 >gi|326387500|ref|ZP_08209109.1| putative ABC transporter ATP-binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326208156|gb|EGD58964.1| putative ABC transporter ATP-binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 559 Score = 44.0 bits (102), Expect = 0.032, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + DL +RF EI M++ P + L EE + I + + + + + Sbjct: 99 VADLVDRFNEISNIMADPPEDADFDALMEEMGELQGKIDAVDGW-TLDNQLEIAMEALRC 157 Query: 69 HNSD 72 SD Sbjct: 158 PPSD 161 >gi|323158080|gb|EFZ44179.1| putative peptide chain release factor H [Escherichia coli EPECa14] Length = 166 Score = 44.0 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 60/149 (40%), Gaps = 4/149 (2%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYD 279 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLE 128 Query: 280 VERKRMANERSANRKLQIGSGDRSERIRT 308 +++ + + R++ +R RT Sbjct: 129 QQQQENSAVLKSLRRMFHHQIERGNPRRT 157 >gi|313668005|ref|YP_004048289.1| hypothetical protein NLA_6650 [Neisseria lactamica ST-640] gi|313005467|emb|CBN86902.1| hypothetical membrane protein [Neisseria lactamica 020-06] Length = 997 Score = 44.0 bits (102), Expect = 0.036, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 45/118 (38%), Gaps = 1/118 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHTV 65 K++ + AE+ ++ES + +L ++ ++ I SK ++ K++ + + + Sbjct: 443 KKLDEENKELAELNKELAESGENEKRKELEKKVKSLEYKIQSKKRQIERLKEDIERVAVL 502 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + E D ++ + + + + T + S + E+ G Sbjct: 503 EEEIKRSEEFFDENGWIKDSVIDDKTKNTVNLKMSNGARWTVTNDSMLKELDLSEGAQ 560 >gi|332185094|ref|ZP_08386843.1| ABC transporter family protein [Sphingomonas sp. S17] gi|332014818|gb|EGI56874.1| ABC transporter family protein [Sphingomonas sp. S17] Length = 559 Score = 44.0 bits (102), Expect = 0.037, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 1/87 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I DL +RF I M + + L EE + I + + + + + Sbjct: 99 IADLVDRFNAISAEMGDPKDDTDFDALMEEMGELQAKIDAVDGW-SLDSQLEQAMEALRC 157 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELEN 95 D+++ L+ E + LE Sbjct: 158 PPGDADVTRLSGGEKRRVALCKLLLEK 184 >gi|302786792|ref|XP_002975167.1| hypothetical protein SELMODRAFT_415236 [Selaginella moellendorffii] gi|300157326|gb|EFJ23952.1| hypothetical protein SELMODRAFT_415236 [Selaginella moellendorffii] Length = 411 Score = 44.0 bits (102), Expect = 0.040, Method: Composition-based stats. Identities = 29/76 (38%), Positives = 46/76 (60%), Gaps = 1/76 (1%) Query: 203 TVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKS 261 + A + + ++DT RA+G GGQH N T+SAVR+ H+PTG++ S ++S Sbjct: 30 SAATSIAYLRMSERDLVAQCKMDTFRATGPGGQHRNKTESAVRLKHLPTGLVSQASEDRS 89 Query: 262 QHQNRLRAMKVLRARL 277 QH+NR A++ LR + Sbjct: 90 QHRNRESAVQRLRHTI 105 >gi|17548920|ref|NP_522260.1| peptide chain release factor-like protein [Ralstonia solanacearum GMI1000] gi|17431170|emb|CAD17850.1| putative peptide chain release factor homolog protein [Ralstonia solanacearum GMI1000] Length = 207 Score = 43.6 bits (101), Expect = 0.041, Method: Composition-based stats. Identities = 48/168 (28%), Positives = 69/168 (41%), Gaps = 6/168 (3%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+ + G +E L V +R +AL +VEVL D + G Sbjct: 2 ILLQFSSAQGPAECELAVLKGLACLQRESALAGVRVEVLEQEDGEHPGTLRSALVSLEGD 61 Query: 172 V-FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRAS 230 + + G + VA +IR +T RAS Sbjct: 62 AEAAVAQRWEGTIQWTCPSPYRPRHARKNWFFGVA----RCAAPAATLPSEIRFETARAS 117 Query: 231 GSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARL 277 G GGQHVN T+SAVR H+ TGI V +E+SQH N+ A+ +L +L Sbjct: 118 GPGGQHVNKTESAVRAIHLATGISVKVQTERSQHANKRLAVLLLAHKL 165 >gi|297851766|ref|XP_002893764.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] gi|297339606|gb|EFH70023.1| hypothetical protein ARALYDRAFT_473511 [Arabidopsis lyrata subsp. lyrata] Length = 256 Score = 43.6 bits (101), Expect = 0.042, Method: Composition-based stats. Identities = 34/85 (40%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P + D ++ R++T R SG GGQH N DSAVR+ H+PTGI+ ++SQH+NR Sbjct: 83 PNYLKFTDDELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNR 142 Query: 267 LRAMKVLRARLYDVERKRMANERSA 291 A+ LR L R ++ E A Sbjct: 143 ASALNRLRTLLAIKVRNKVDLEAYA 167 >gi|281357476|ref|ZP_06243964.1| ABC transporter related protein [Victivallis vadensis ATCC BAA-548] gi|281316079|gb|EFB00105.1| ABC transporter related protein [Victivallis vadensis ATCC BAA-548] Length = 657 Score = 43.6 bits (101), Expect = 0.046, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 35/66 (53%), Gaps = 9/66 (13%) Query: 6 HKQICDLKNRFAEIEL-------RMSESPSVDAYIKLTEEYAAI-SPIISKISIYDQKKQ 57 K++ +L++R ++E ++++ ++D + L E A I S I S S +++ Q Sbjct: 582 EKRVAELESRLEQLEKRQAGLLEQLADPGALD-FASLNRELAKIQSDITSTESEWEEAAQ 640 Query: 58 EEQDLH 63 + +++ Sbjct: 641 KLEEIR 646 >gi|12322377|gb|AAG51209.1|AC051630_6 peptide chain release factor, putative; 8726-9996 [Arabidopsis thaliana] Length = 255 Score = 43.6 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P + + ++ R++T R SG GGQH N DSAVR+ H+PTGI+ ++SQH+NR Sbjct: 84 PNYLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNR 143 Query: 267 LRAMKVLRARLYDVERKRMANERSA 291 A+ LR L R ++ E A Sbjct: 144 ASALNRLRTLLAIKVRNKVDIEAYA 168 >gi|30692851|ref|NP_174601.2| peptide chain release factor, putative [Arabidopsis thaliana] gi|12322576|gb|AAG51290.1|AC027035_13 unknown protein [Arabidopsis thaliana] gi|26450075|dbj|BAC42157.1| putative peptide chain release factor [Arabidopsis thaliana] gi|29824307|gb|AAP04114.1| putative peptide chain release factor [Arabidopsis thaliana] gi|332193463|gb|AEE31584.1| Class I peptide chain release factor [Arabidopsis thaliana] Length = 257 Score = 43.6 bits (101), Expect = 0.048, Method: Composition-based stats. Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 1/85 (1%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 P + + ++ R++T R SG GGQH N DSAVR+ H+PTGI+ ++SQH+NR Sbjct: 84 PNYLKFTDEELMKQCRLETFRVSGPGGQHRNKRDSAVRLKHLPTGIVAQAVEDRSQHKNR 143 Query: 267 LRAMKVLRARLYDVERKRMANERSA 291 A+ LR L R ++ E A Sbjct: 144 ASALNRLRTLLAIKVRNKVDIEAYA 168 >gi|193216885|ref|YP_002000127.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1] gi|193002208|gb|ACF07423.1| massive surface protein MspG [Mycoplasma arthritidis 158L3-1] Length = 2711 Score = 43.6 bits (101), Expect = 0.049, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 27/55 (49%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +Q+ ++K+ +++ ++S++ + +LT+E + + KI + + Sbjct: 712 KEQLDNVKSELEDLKKKISDAYNAKNLEELTKELNKLEKLKEKIEDLETLATTIE 766 >gi|103486770|ref|YP_616331.1| putative ABC transporter ATP-binding protein [Sphingopyxis alaskensis RB2256] gi|98976847|gb|ABF52998.1| ABC transporter related [Sphingopyxis alaskensis RB2256] Length = 670 Score = 43.3 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 1/87 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D+ +RF EI M++ P+ + L EE + I + + + + + Sbjct: 210 VADMMDRFNEISALMADPPADADFDALMEEMGTLQEKIDAVDGW-TLDNQLEIAMEALRC 268 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELEN 95 D + +L+ E I LE Sbjct: 269 PPGDWSVENLSGGEKRRIALTRLLLEK 295 >gi|330467788|ref|YP_004405531.1| peptide chain release factor-like protein [Verrucosispora maris AB-18-032] gi|328810759|gb|AEB44931.1| peptide chain release factor-like protein [Verrucosispora maris AB-18-032] Length = 202 Score = 43.3 bits (100), Expect = 0.054, Method: Composition-based stats. Identities = 41/189 (21%), Positives = 66/189 (34%), Gaps = 3/189 (1%) Query: 121 GGSEAALFV-GDLFRMYERYAALRKWKVEVLSSSDNDDGG-YKEIVATISGRGVFSRMKF 178 G + + L R E AA ++ +V + + D G Y+ ++ + G GV + Sbjct: 11 RGPQECAWALAHLLRRLEAEAARQRLRVHRVDTVAGDRPGTYRSVLVEVGGAGVEAFAAS 70 Query: 179 ESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVN 238 +G Q A T A D+ + R G GGQH N Sbjct: 71 WTGTLCWQAPSPYRAGVGRKNWYVTAQ-PCPADPDATCFEESDVEVVACRTGGPGGQHRN 129 Query: 239 TTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIG 298 +AVR TH PTG++V + Q R L + + + + R Sbjct: 130 KVSTAVRATHRPTGLVVVVDTERQFSLNRRIALRLLRQRLANRDETAVRDATTARWQLHD 189 Query: 299 SGDRSERIR 307 R + +R Sbjct: 190 RLVRGDPVR 198 >gi|327309086|ref|XP_003239234.1| peptidyl-tRNA hydrolase [Trichophyton rubrum CBS 118892] gi|326459490|gb|EGD84943.1| peptidyl-tRNA hydrolase [Trichophyton rubrum CBS 118892] Length = 190 Score = 43.3 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 33/123 (26%), Positives = 56/123 (45%), Gaps = 6/123 (4%) Query: 164 VATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR 223 + I + F + + R+ + P G V A+ L + I +I Sbjct: 1 MFKIYPQTPFRHISKRTAQWRLIQYP-----GHVRFFQASPLSLAKQMPPRPTIDDSEIT 55 Query: 224 IDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER 282 ++ SG GGQ +N T SAV++ HIPT +V + +SQ QNR A ++L ++ +E+ Sbjct: 56 GTYLKGSGPGGQKINKTSSAVQLIHIPTNTVVKCQATRSQSQNRKIAKRILAEKIELLEK 115 Query: 283 KRM 285 Sbjct: 116 GEQ 118 >gi|149369402|ref|ZP_01889254.1| putative peptide chain release factor [unidentified eubacterium SCB49] gi|149356829|gb|EDM45384.1| putative peptide chain release factor [unidentified eubacterium SCB49] Length = 238 Score = 43.3 bits (100), Expect = 0.060, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 4/191 (2%) Query: 107 DDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLS-SSDNDDGGYKEIVA 165 + + I++I AG G +E V + + E++S + ++ + + Sbjct: 6 NKMNTQIIQITAGRGPAECCWVVAQTLKFLIKELTATNITYEIISKENGFENRTIQSVTL 65 Query: 166 TISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRID 225 + G+ + + + G + + +A +++ L ++ Sbjct: 66 QLKGKQLDTFLANWLGTIQWVGTSTFRKHHKRKNWF--IACFKVEETNKLELVLNEVSFQ 123 Query: 226 TMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 MR+SG GGQHVN SA+R TH +G +V +SQHQNR A+K L+ ++ + R Sbjct: 124 AMRSSGPGGQHVNKVSSAIRATHKKSGLQVVAMDSRSQHQNRKIAIKRLQEKVSNFNRNT 183 Query: 285 MANERSANRKL 295 + N + Sbjct: 184 LQNSVDDQWRN 194 >gi|218779987|ref|YP_002431305.1| ABC transporter [Desulfatibacillum alkenivorans AK-01] gi|218761371|gb|ACL03837.1| ABC transporter related [Desulfatibacillum alkenivorans AK-01] Length = 666 Score = 42.9 bits (99), Expect = 0.078, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 4/70 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISP-IISKISIYDQKKQEEQD 61 K+I L+ R AEI +++ K L EEY + + + ++ ++ ++ ++ Sbjct: 596 EKKISKLEAREAEISELLADPDVFSDSEKSQPLLEEYQKVKDGLDNLMTAWEADQEAIEE 655 Query: 62 LHTVIGDHNS 71 L + Sbjct: 656 LEAQLQAELD 665 >gi|283457901|ref|YP_003362502.1| ABC transporter ATPase [Rothia mucilaginosa DY-18] gi|283133917|dbj|BAI64682.1| ATPase component of ABC transporter [Rothia mucilaginosa DY-18] Length = 559 Score = 42.9 bits (99), Expect = 0.081, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L EE + I + +D + + + Sbjct: 96 IKSKLDRFNEISALMAEPDA--DFDALMEEMGQLQEAIDAANAWD-LDSQLEQAMEALRC 152 Query: 69 HNSD 72 +D Sbjct: 153 PPAD 156 >gi|255326601|ref|ZP_05367678.1| ABC transporter, ATP-binding protein [Rothia mucilaginosa ATCC 25296] gi|255296341|gb|EET75681.1| ABC transporter, ATP-binding protein [Rothia mucilaginosa ATCC 25296] Length = 559 Score = 42.9 bits (99), Expect = 0.085, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L EE + I + +D + + + Sbjct: 96 IKSKLDRFNEISALMAEPDA--DFDALMEEMGQLQEAIDAANAWD-LDSQLEQAMEALRC 152 Query: 69 HNSD 72 +D Sbjct: 153 PPAD 156 >gi|325295640|ref|YP_004282154.1| Valyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066088|gb|ADY74095.1| Valyl-tRNA synthetase [Desulfurobacterium thermolithotrophum DSM 11699] Length = 875 Score = 42.5 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLH 63 K++ D++ ++E ++S + K + + + + + Q+ + L Sbjct: 817 KKLKDIEKDIQKLERKLSNENFLKKAPKNVVEKNRKELEELKEVSEKLARTLQQLKHLQ 875 >gi|227875984|ref|ZP_03994107.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus mulieris ATCC 35243] gi|269977110|ref|ZP_06184084.1| ATP-binding component of an ABC transporter [Mobiluncus mulieris 28-1] gi|306819265|ref|ZP_07452976.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus mulieris ATCC 35239] gi|307700131|ref|ZP_07637177.1| ATP-binding cassette protein, ChvD family [Mobiluncus mulieris FB024-16] gi|227843516|gb|EEJ53702.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus mulieris ATCC 35243] gi|269934941|gb|EEZ91501.1| ATP-binding component of an ABC transporter [Mobiluncus mulieris 28-1] gi|304648047|gb|EFM45361.1| ABC superfamily ATP binding cassette transporter, ABC protein [Mobiluncus mulieris ATCC 35239] gi|307614680|gb|EFN93903.1| ATP-binding cassette protein, ChvD family [Mobiluncus mulieris FB024-16] Length = 560 Score = 42.5 bits (98), Expect = 0.093, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI MSE + + L EE + I + +D + + + Sbjct: 96 IKAKLDRFNEISTLMSEPDA--DFDALMEEMGKLQEEIDAANAWD-LDNQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E+++ Sbjct: 153 PPPDAEVKN 161 >gi|289616588|emb|CBI56753.1| unnamed protein product [Sordaria macrospora] Length = 2267 Score = 42.5 bits (98), Expect = 0.095, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 7/116 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ ++R E+E ++ + DA IK+++ I+ + + D Sbjct: 1937 IMVLQEQLQAREHRIEELEQQLEKVD-PDADIKISKR----DDEITWLRELLAVR--HSD 1989 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L +IG +SD +D + + ++ ++ E E + + + IR Sbjct: 1990 LQDIIGALSSDDYDQDAVRDAAIRLKANLQMEEQERERAMNGGSAINLPNIAATIR 2045 >gi|225629578|ref|ZP_03787603.1| Protein chain release factor B [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591567|gb|EEH12582.1| Protein chain release factor B [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 69 Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 23/62 (37%) Query: 15 RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74 R E++ + S K E S I + + + + + + D +++ +++ Sbjct: 2 RLEELDSQASNDDLWQDNQKAQEVLKERSKIKNDVESFLKLESDYNDAISLMKSAIDEND 61 Query: 75 IR 76 Sbjct: 62 EE 63 >gi|295396672|ref|ZP_06806819.1| ABC superfamily ATP binding cassette transporter [Brevibacterium mcbrellneri ATCC 49030] gi|294970481|gb|EFG46409.1| ABC superfamily ATP binding cassette transporter [Brevibacterium mcbrellneri ATCC 49030] Length = 560 Score = 42.1 bits (97), Expect = 0.12, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + +R+ EI MS + + L EE + I +D + + Sbjct: 96 IKEKLDRYNEISNEMSNPDA--DFDALMEEMGKLQEEIDAADAWD-LDSQLDQAMDALRC 152 Query: 69 HNSDSEIR 76 D+++R Sbjct: 153 PPGDADVR 160 >gi|296775803|gb|ADH43058.1| hypothetical protein [uncultured SAR11 cluster alpha proteobacterium H17925_48B19] Length = 52 Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 10/51 (19%), Positives = 26/51 (50%), Gaps = 1/51 (1%) Query: 3 FLSHKQICDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAISPIISKISIY 52 + ++ DL + +++E +S ++ + ++EY+ +S II + Y Sbjct: 1 MVPLSKVQDLIVKHSKLEKELSSQEIDKKSFAEKSKEYSDLSDIIKEAISY 51 >gi|212224573|ref|YP_002307809.1| chromosome segregation protein [Thermococcus onnurineus NA1] gi|212009530|gb|ACJ16912.1| DNA double-strand break repair ATPase [Thermococcus onnurineus NA1] Length = 884 Score = 42.1 bits (97), Expect = 0.13, Method: Composition-based stats. Identities = 21/136 (15%), Positives = 47/136 (34%), Gaps = 1/136 (0%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + K++ ++ + AE+E + E +L E+ + + P + + E + Sbjct: 562 VLEKKLKSIEEKLAELENELGELGF-SDIKELDEKLSELEPAYRRYLELKGAESELEREK 620 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + + E + +E+R+ NE L P++ + +R G Sbjct: 621 KRLKRTEEELEETREKLQGEFSSLEELRKRLNEKEKLYSPEEHAGIRERFTSLREELAGK 680 Query: 124 EAALFVGDLFRMYERY 139 A L + R Sbjct: 681 RAQLEALEKKREETME 696 >gi|300741679|ref|ZP_07071700.1| ABC transporter, ATP-binding protein [Rothia dentocariosa M567] gi|300380864|gb|EFJ77426.1| ABC transporter, ATP-binding protein [Rothia dentocariosa M567] Length = 559 Score = 42.1 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L EE + I + +D + + + Sbjct: 96 IKAKLDRFNEISALMAEPDA--DFDALMEEMGKLQEAIDAANAWD-LDSQLEQAMEALRC 152 Query: 69 HNSD 72 +D Sbjct: 153 PPAD 156 >gi|213865384|ref|ZP_03387503.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 55 Score = 42.1 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 8/48 (16%), Positives = 23/48 (47%), Gaps = 3/48 (6%) Query: 8 QICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIY 52 ++ L R E++ + ++ ++ + L+ EYA +S + + + Sbjct: 8 KLEALHERHEEVQALLGDAQTIADQERFRALSREYAQLSDVSRCFTDW 55 >gi|311113782|ref|YP_003985004.1| ABC transporter ATP-binding protein [Rothia dentocariosa ATCC 17931] gi|310945276|gb|ADP41570.1| ABC superfamily ATP binding cassette transporter, ABC protein [Rothia dentocariosa ATCC 17931] Length = 559 Score = 42.1 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L EE + I + +D + + + Sbjct: 96 IKAKLDRFNEISALMAEPDA--DFDALMEEMGKLQEAIDAANAWD-LDSQLEQAMEALRC 152 Query: 69 HNSDS 73 +D+ Sbjct: 153 PPADA 157 >gi|293413513|ref|ZP_06656162.1| hypothetical protein ECDG_00053 [Escherichia coli B185] gi|291433571|gb|EFF06544.1| hypothetical protein ECDG_00053 [Escherichia coli B185] Length = 122 Score = 42.1 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 29/84 (34%), Positives = 45/84 (53%) Query: 225 DTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKR 284 DT+R+SG GGQHVN TDSAVR TH+ +GI V + R ++L A + +++ Sbjct: 30 DTLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQQQQE 89 Query: 285 MANERSANRKLQIGSGDRSERIRT 308 + + R++ +R RT Sbjct: 90 NSAALKSQRRMFHHQIERGNPRRT 113 >gi|227497421|ref|ZP_03927653.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinomyces urogenitalis DSM 15434] gi|226833097|gb|EEH65480.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinomyces urogenitalis DSM 15434] Length = 560 Score = 42.1 bits (97), Expect = 0.14, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI +M++ + + L EE + I + +D + + + Sbjct: 96 IKGKLDRFNEISAQMADPDA--DFDALMEEMGKLQTEIDAANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E++ Sbjct: 153 PPPDAEVKH 161 >gi|307946015|ref|ZP_07661350.1| holdfast attachment protein C [Roseibium sp. TrichSKD4] gi|307769679|gb|EFO28905.1| holdfast attachment protein C [Roseibium sp. TrichSKD4] Length = 605 Score = 42.1 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 30/65 (46%), Gaps = 7/65 (10%) Query: 7 KQICDLKNRFAEIELRMSESP----SVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 QI L+ + +++ M++ + D + KL+ A I+ + + +++ E + L Sbjct: 543 DQIEALEAKLEKLQAEMNDPNLYAKNPDKFAKLS---AQITDVTEQKGALEEQWLELEML 599 Query: 63 HTVIG 67 + + Sbjct: 600 NEEMN 604 >gi|193216477|ref|YP_001999719.1| massive surface protein MspA [Mycoplasma arthritidis 158L3-1] gi|193001800|gb|ACF07015.1| massive surface protein MspA [Mycoplasma arthritidis 158L3-1] Length = 2336 Score = 42.1 bits (97), Expect = 0.15, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 26/55 (47%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +Q+ + K+ +++ ++S++ + +LT+E + + KI + + Sbjct: 712 KEQLDNAKSELEDLKKKISDAYNAKNLEELTKELNKLEKLKEKIEDLETLATTIE 766 >gi|224127830|ref|XP_002329188.1| predicted protein [Populus trichocarpa] gi|222870969|gb|EEF08100.1| predicted protein [Populus trichocarpa] Length = 257 Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 E+ D + +DT +ASG GGQH N +SAVR+ H+PTGI+ ++SQH NR Sbjct: 89 NYLELTDDELMRQCEMDTFKASGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHMNRA 148 Query: 268 RAMKVLRARL 277 A+K LRA L Sbjct: 149 SALKRLRALL 158 >gi|168701291|ref|ZP_02733568.1| peptide chain release factor 2 [Gemmata obscuriglobus UQM 2246] Length = 185 Score = 41.7 bits (96), Expect = 0.16, Method: Composition-based stats. Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 1/68 (1%) Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTG-IMVTSSEKSQHQNRLRAM 270 + D L +DT RASG GGQ N T SAVR+ H PTG I++ +SQH+N+ +A+ Sbjct: 18 HLTEDQLLRQCEVDTYRASGPGGQKRNKTSSAVRLRHAPTGLIVIAEESRSQHENKAKAL 77 Query: 271 KVLRARLY 278 K L L+ Sbjct: 78 KRLWHALF 85 >gi|254572770|ref|XP_002493494.1| Essential protein involved in intracellular protein transport [Pichia pastoris GS115] gi|238033293|emb|CAY71315.1| Essential protein involved in intracellular protein transport [Pichia pastoris GS115] gi|328354682|emb|CCA41079.1| Intracellular protein transport protein USO1 [Pichia pastoris CBS 7435] Length = 1404 Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 12/119 (10%), Positives = 45/119 (37%), Gaps = 7/119 (5%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYDQKKQEE 59 L ++ LK++F+ ++ + +E ++ L +E++ + + + +Q ++ Sbjct: 762 LLEEEYESLKSKFSNVDTKFAE--VWNSNESLEKEHSELLVSFNECKKTLQELEQTSKQL 819 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + T + + S+ + + ++ E + K ++ + + Sbjct: 820 AEAKTKLEEEKSE-DYEQIKKMAKNLFTIGKENEEYKKIKKEQEKLDKKHEAELDTLHK 877 >gi|207110569|ref|ZP_03244731.1| peptide chain release factor 1 [Helicobacter pylori HPKX_438_CA4C1] Length = 54 Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAISPIISKISIY 52 + + +++ + R+ E+ +S + + K L++E ++I I Y Sbjct: 1 MSILAEKLSSILKRYDELTALLSSAEVISDIKKLTELSKEQSSIEEISIASKEY 54 >gi|256824744|ref|YP_003148704.1| ABC transporter ATP-binding protein [Kytococcus sedentarius DSM 20547] gi|256688137|gb|ACV05939.1| ATPase component of ABC transporters with duplicated ATPase domain [Kytococcus sedentarius DSM 20547] Length = 560 Score = 41.7 bits (96), Expect = 0.17, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 QI +R+ EI M++ + + L EE + I +D + + + Sbjct: 95 QIKADLDRYNEISAEMADPDA--DFDALMEEMGKLQEKIDNADAWD-LDSQLEQAMDALR 151 Query: 68 DHNSDS 73 +D Sbjct: 152 CPPADE 157 >gi|224143168|ref|XP_002324868.1| predicted protein [Populus trichocarpa] gi|222866302|gb|EEF03433.1| predicted protein [Populus trichocarpa] Length = 713 Score = 41.7 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLHTVIG 67 + DL R+ E+E + S L +E+ ++ + + Q +E+ ++ ++ Sbjct: 520 LEDLSKRYEELEAK-----SKADIKFLAKEFKSLKNSQTTLKQELSQSLKEKSEVEKLLH 574 Query: 68 DHNSDSEI 75 + E Sbjct: 575 EEREMKEH 582 >gi|46446182|ref|YP_007547.1| putative peptide chain release factor 2 [Candidatus Protochlamydia amoebophila UWE25] gi|46399823|emb|CAF23272.1| putative peptide chain release factor 2 [Candidatus Protochlamydia amoebophila UWE25] Length = 118 Score = 41.7 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 48/76 (63%), Gaps = 1/76 (1%) Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAM 270 + L + ++ T R+SGSGGQH+N T+SAVR+TH PTGI+V + + +SQ++N+ + Sbjct: 9 PEQDEDLLAECQVQTFRSSGSGGQHINVTNSAVRLTHFPTGIVVSSQTFRSQYRNKQNCL 68 Query: 271 KVLRARLYDVERKRMA 286 LR + + ++ Sbjct: 69 AKLRQTVEKLNYRQPK 84 >gi|326517198|dbj|BAJ99965.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 170 Score = 41.7 bits (96), Expect = 0.18, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + D + + T ++SG GGQH N +SAVR+ H PTGI+ ++SQH+NR A+ Sbjct: 1 MTDDELMAQCDMGTFKSSGPGGQHRNKRESAVRLRHHPTGIVAQAVEDRSQHKNRSSALS 60 Query: 272 VLRARLYDVERKRMANERSANR---------KLQIGSGDRSERI 306 LR + R+ + + K I S D +I Sbjct: 61 RLRTLIALKVRRPINLDNYTPPVELLQILPLKSTIRSKDVGNQI 104 >gi|167590758|ref|ZP_02383146.1| peptide chain release factor-like protein [Burkholderia ubonensis Bu] Length = 177 Score = 41.7 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 8/176 (4%) Query: 112 CILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRG 171 +L+I + G +E L + + A + + VL + G V G Sbjct: 1 MLLQISSAHGPAECQLAAAKALQRLQAEADACRVALTVLDLQPGERPGTVRSVLL-DLDG 59 Query: 172 VFSRMKFESGVHRVQRV--PATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRA 229 + + +Q + V +P ++ + MRA Sbjct: 60 ADAAALADRWAGTLQWICASPYRLRHPRKNWFVGV----TRCADAPPLPDGAVKFEAMRA 115 Query: 230 SGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKR 284 G GGQHVN T SA+R TH+ TG V SE+SQH N+ A+++L ARL + + Sbjct: 116 RGPGGQHVNKTSSAIRATHLATGTSVRVESERSQHANKRLALQLLHARLREQADRE 171 >gi|87200365|ref|YP_497622.1| putative ABC transporter ATP-binding protein [Novosphingobium aromaticivorans DSM 12444] gi|87136046|gb|ABD26788.1| ABC transporter related protein [Novosphingobium aromaticivorans DSM 12444] Length = 559 Score = 41.7 bits (96), Expect = 0.19, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 1/63 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 DL +RF EI M++ P + L EE + I + + + + + Sbjct: 100 ADLVDRFNEISNIMADPPEDVDFDALMEEMGELQGKIDAVDGW-TLDNQLEIAMEALRCP 158 Query: 70 NSD 72 D Sbjct: 159 PGD 161 >gi|86739856|ref|YP_480256.1| putative ABC transporter ATP-binding protein [Frankia sp. CcI3] gi|86566718|gb|ABD10527.1| ABC transporter related [Frankia sp. CcI3] Length = 560 Score = 41.7 bits (96), Expect = 0.20, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R+ EI +MS + + L E A + I + ++ + + Sbjct: 96 IRRVLARYEEINEKMSAPDA--DFDSLLAEQAELIDKIEAANAWE-LDSQLDQAMDALRL 152 Query: 69 HNSDSE 74 D++ Sbjct: 153 PPGDAD 158 >gi|184200739|ref|YP_001854946.1| putative ABC transporter ATP-binding protein [Kocuria rhizophila DC2201] gi|183580969|dbj|BAG29440.1| putative ABC transporter ATP-binding protein [Kocuria rhizophila DC2201] Length = 560 Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L EE + I + +D + + + Sbjct: 96 IKAKLDRFNEISAEMAEPDA--DFDALMEEMGKLQEEIDSANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 D++++ Sbjct: 153 PPPDADVK 160 >gi|302343659|ref|YP_003808188.1| class I peptide chain release factor [Desulfarculus baarsii DSM 2075] gi|301640272|gb|ADK85594.1| Class I peptide chain release factor [Desulfarculus baarsii DSM 2075] Length = 113 Score = 41.3 bits (95), Expect = 0.21, Method: Composition-based stats. Identities = 27/73 (36%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRLRA 269 P ++ + RASG GGQH N ++ VR+TH+P+G++V+++E +S+ QNR A Sbjct: 1 MSKPSPPPEHELSWEYFRASGPGGQHRNKVETGVRLTHLPSGLVVSATERRSREQNRQAA 60 Query: 270 MKVLRARLYDVER 282 ++ L RL D + Sbjct: 61 LERLARRLADQAK 73 >gi|111221284|ref|YP_712078.1| putative ABC transporter ATP-binding protein [Frankia alni ACN14a] gi|111148816|emb|CAJ60494.1| putative transport protein (ABC superfamily, atp_bind) [Frankia alni ACN14a] Length = 560 Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R+ EI +MS + + L E A + I + ++ + + Sbjct: 96 IRRVLARYEEINEKMSAPDA--DFDSLLTEQAELIDKIEAANAWE-LDSQLDQAMDALRL 152 Query: 69 HNSDSE 74 D++ Sbjct: 153 PPGDAD 158 >gi|302918020|ref|XP_003052567.1| hypothetical protein NECHADRAFT_67284 [Nectria haematococca mpVI 77-13-4] gi|256733507|gb|EEU46854.1| hypothetical protein NECHADRAFT_67284 [Nectria haematococca mpVI 77-13-4] Length = 2011 Score = 41.3 bits (95), Expect = 0.22, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E +S++ DA K+T+ IS + + ++ Sbjct: 1747 IMVLQEQLQAREQRIEELEHSLSKAD-PDAASKITKR----DDEISWLRELLAVR--HEN 1799 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 L +I SD RD + + ++ ++ E E + Sbjct: 1800 LQDIIAALQSDRFDRDAVKDAAIRLKANLQMEEQERERAMN 1840 >gi|213026528|ref|ZP_03340975.1| peptide chain release factor 1 [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 54 Score = 41.3 bits (95), Expect = 0.24, Method: Composition-based stats. Identities = 34/53 (64%), Positives = 42/53 (79%) Query: 94 ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWK 146 E ++ LLLPKD DD+++ LE+RAGTGG EAALF GDLFRMY RYA R+W+ Sbjct: 1 EQQLQVLLLPKDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWR 53 >gi|294011629|ref|YP_003545089.1| putative ABC-type transporter ATPase component [Sphingobium japonicum UT26S] gi|292674959|dbj|BAI96477.1| putative ABC-type transporter ATPase component [Sphingobium japonicum UT26S] Length = 561 Score = 40.9 bits (94), Expect = 0.26, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I D +RF EI L +++ P + L EE + I + + + + + Sbjct: 101 IADKLDRFNEISLELADPPEDVDFDALMEEMGTLQEQIDAVDGW-TLDNQLEIAMEALRC 159 Query: 69 HNSD 72 SD Sbjct: 160 PPSD 163 >gi|291236335|ref|XP_002738097.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 4080 Score = 40.9 bits (94), Expect = 0.27, Method: Composition-based stats. Identities = 14/140 (10%), Positives = 48/140 (34%), Gaps = 9/140 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 K++ + + + E V+++ K +E ++ + S + +++ +D Sbjct: 750 RKKVENFEAKLQEYNKE------VESFRK--KEIMSMDEMKSNVEQLSNIQKKLEDARDE 801 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN-YLLLPKDTDDDKSCILEIRAGTGGSE 124 + N + E+ + + ++ + + K + + + + Sbjct: 802 LESLNKEEELLEWEPTQFPILQYMFQLKAPYDQLWNTALKFHTNFEFWMNGPFLDLNAEQ 861 Query: 125 AALFVGDLFRMYERYAALRK 144 VG+++R + A Sbjct: 862 VEEEVGNMWRNMYKLAKSFN 881 >gi|319790640|ref|YP_004152273.1| valyl-tRNA synthetase [Thermovibrio ammonificans HB-1] gi|317115142|gb|ADU97632.1| valyl-tRNA synthetase [Thermovibrio ammonificans HB-1] Length = 879 Score = 40.9 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 2/59 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDL 62 K++ + A++E ++S + K + + + + S Q Q+ Q L Sbjct: 820 KKKLEKMAKEIAKLEKKLSNENFLAKAPKEVVEKNRKELQELTQLHSKLTQTLQQLQKL 878 >gi|50545671|ref|XP_500374.1| YALI0B01144p [Yarrowia lipolytica] gi|49646240|emb|CAG82589.1| YALI0B01144p [Yarrowia lipolytica] Length = 154 Score = 40.9 bits (94), Expect = 0.30, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 6/91 (6%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 + +IR +R SG GGQ +N + +ITHIPTG++V + +S +NR Sbjct: 20 PQMPPRPKVDENEIRESFIRGSGPGGQCINRRSTRCQITHIPTGLVVSSQKTRSLEENRK 79 Query: 268 RAMKVLRARLYDVERKRMANERSANRKLQIG 298 A + + + ++M +RK +G Sbjct: 80 IARQ-----ILADKLEQMFAPPGTSRKDVVG 105 >gi|154317864|ref|XP_001558251.1| hypothetical protein BC1G_02915 [Botryotinia fuckeliana B05.10] gi|150843573|gb|EDN18766.1| hypothetical protein BC1G_02915 [Botryotinia fuckeliana B05.10] Length = 1097 Score = 40.9 bits (94), Expect = 0.31, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 44/142 (30%), Gaps = 6/142 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +S ++I L+ E++ M+ + L + + + Q Sbjct: 287 VSVERIKTLRKELEELDEEMAVGGL--KIVNLQRRRENLKQLNDAVQQLKQIVNAVASCE 344 Query: 64 TVIG----DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +++ + D+ I + + + + ++ L + + +R Sbjct: 345 SMVENGDVEQALDAIDALEKLIAGEEMLSKPGQHKIQLRDLRGAIALQGVNNDLDVLRFR 404 Query: 120 TGGSEAALFVGDLFRMYERYAA 141 G S + F+ L R+ Sbjct: 405 IGKSFESRFLQALLGDLRRHVD 426 >gi|20379621|gb|AAH27731.1| MTRF1 protein [Homo sapiens] gi|119629055|gb|EAX08650.1| mitochondrial translational release factor 1, isoform CRA_b [Homo sapiens] Length = 151 Score = 40.9 bits (94), Expect = 0.33, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 28/67 (41%), Gaps = 1/67 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK-LTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L + +E + P + + L +A ++P+ + + +Q ++L + Sbjct: 76 QKYMENLSKEYQTLEQCLQHIPVNEENRRSLNRRHAELAPLAAIYQEIQETEQAIEELES 135 Query: 65 VIGDHNS 71 + S Sbjct: 136 MCKKTES 142 >gi|317124471|ref|YP_004098583.1| ABC transporter [Intrasporangium calvum DSM 43043] gi|315588559|gb|ADU47856.1| ABC transporter related protein [Intrasporangium calvum DSM 43043] Length = 571 Score = 40.6 bits (93), Expect = 0.34, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI M++ + + L +E + I +D + + + Sbjct: 107 IKAKLDRYNEISAEMADPDA--DFDALLQEMGKLQEQIDHADAWD-LDNQLEQAMDALRC 163 Query: 69 HNSD 72 D Sbjct: 164 PPPD 167 >gi|296126911|ref|YP_003634163.1| AAA ATPase [Brachyspira murdochii DSM 12563] gi|296018727|gb|ADG71964.1| AAA ATPase [Brachyspira murdochii DSM 12563] Length = 1284 Score = 40.6 bits (93), Expect = 0.35, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 46/125 (36%), Gaps = 4/125 (3%) Query: 12 LKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 LK++ EI +MS++ D Y KL++E+ I +IS E ++ + + D + Sbjct: 682 LKSKMNEIRDKMSDADISDDDYEKLSKEF---RNIKKEISQLKNNSFELKETYKALLDES 738 Query: 71 SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVG 130 E D ++ + L+ E + + + ++ F Sbjct: 739 IIKEYNDTKNTNIIKECIDKNILKIEKIKNVFNNIEEYSNTYKYSLKEEDIKELENNFKS 798 Query: 131 DLFRM 135 R+ Sbjct: 799 LQGRI 803 >gi|148264585|ref|YP_001231291.1| class I peptide chain release factor [Geobacter uraniireducens Rf4] gi|146398085|gb|ABQ26718.1| Class I peptide chain release factor [Geobacter uraniireducens Rf4] Length = 108 Score = 40.6 bits (93), Expect = 0.38, Method: Composition-based stats. Identities = 40/72 (55%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + ++I DI+I+ RASG GGQH NTTDSAVRI H+PTGI+V S +SQ QNR AM Sbjct: 1 MAMEIKESDIKIEFYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREVAMH 60 Query: 272 VLRARLYDVERK 283 L+ L ERK Sbjct: 61 RLQEALLKRERK 72 >gi|221128265|ref|XP_002155082.1| PREDICTED: similar to predicted protein, partial [Hydra magnipapillata] Length = 887 Score = 40.6 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI-SIYDQKKQEE 59 M L K++ + +R ++E +++ +D +L +E ++ + + + YD+ + Sbjct: 720 MKKLLRKKMFN--DRIEKLENKLNS--VIDENKELKKELGELNKAVEFVSNNYDKIVADH 775 Query: 60 QDLHTVIGDH 69 Q T + + Sbjct: 776 QTSKTSLINE 785 >gi|89076237|ref|ZP_01162585.1| putative ABC transporter, ATP-binding protein [Photobacterium sp. SKA34] gi|89048066|gb|EAR53653.1| putative ABC transporter, ATP-binding protein [Photobacterium sp. SKA34] Length = 644 Score = 40.6 bits (93), Expect = 0.41, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++I DL+N A I+ ++++ T+ AA++ + ++ + ++L + Sbjct: 584 QKIEDLENEIANIQEQINDPAFFSDPKNDTQ--AALTGLAKLEEEFEVAFERWEELEAMQ 641 Query: 67 GD 68 + Sbjct: 642 KE 643 >gi|15669345|ref|NP_248150.1| cell division protein CDC48 [Methanocaldococcus jannaschii DSM 2661] gi|2492505|sp|Q58556|Y1156_METJA RecName: Full=Cell division cycle protein 48 homolog MJ1156 gi|1591785|gb|AAB99153.1| cell division control protein 48 (cdc48), AAA family [Methanocaldococcus jannaschii DSM 2661] Length = 903 Score = 40.6 bits (93), Expect = 0.42, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 5/91 (5%) Query: 6 HKQICDLKNRFAE----IELRMSESPSVDAYIKLTEEYAA-ISPIISKISIYDQKKQEEQ 60 ++I ++ + I + D KL + + + I + + + Sbjct: 743 KEKIEAVEKEIDKFLEVINKEELKPSEKDEAQKLAKYLKDILGKLKEMIDNIYELENKLN 802 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIR 91 L + D I+ I Sbjct: 803 TLKEQVSAEEIDEIIKTTQNIIQRFTTSLDE 833 >gi|212638649|ref|YP_002315169.1| flagellar motor protein MotB [Anoxybacillus flavithermus WK1] gi|212560129|gb|ACJ33184.1| Flagellar motor protein B [Anoxybacillus flavithermus WK1] Length = 251 Score = 40.2 bits (92), Expect = 0.45, Method: Composition-based stats. Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 4/166 (2%) Query: 15 RFAEIELRMSESPSVDAYIKLTEE-YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 E++ + +SP+ Y+K+++E Y + I SK + Y + Q +L + + Sbjct: 72 EREEVDSVIKDSPNQKPYVKISKEEYEELKKIQSKFNEYVKTNQLSGELSVAMTEEGL-L 130 Query: 74 EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLF 133 + + N + + ++ ++ A F + Sbjct: 131 VTIANDVLFDSGSADIKPQYRNVAKKISNLLVMNPPRNIVISGHTDNVPINNAKFASNWE 190 Query: 134 RMYERYAALRK--WKVEVLSSSDNDDGGYKEIVATISGRGVFSRMK 177 R K + L GY E S R K Sbjct: 191 LSVMRAVNFMKLLLENTKLDPQLFSAKGYGEFKPIASNATPEGRAK 236 >gi|225560057|gb|EEH08339.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR] Length = 2533 Score = 40.2 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 12/111 (10%), Positives = 37/111 (33%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I I+ + + D Sbjct: 2219 IMVLQDQLQQREGRIEELEQELAAID--KDAPAKVKER-EIE--INWLRELLGVR--LDD 2271 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2272 LQDIINTLSQPSFNQQAVRDAAIRLKANMQMEQQEKERAMSGGNGNGSQQF 2322 >gi|289807125|ref|ZP_06537754.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 145 Score = 40.2 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 34/75 (45%), Positives = 43/75 (57%), Gaps = 1/75 (1%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 70 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 129 Query: 256 -TSSEKSQHQNRLRA 269 SE+SQH N+ Sbjct: 130 KVQSERSQHANKRLG 144 >gi|123414056|ref|XP_001304412.1| hypothetical protein [Trichomonas vaginalis G3] gi|121885862|gb|EAX91482.1| hypothetical protein TVAG_384620 [Trichomonas vaginalis G3] Length = 459 Score = 40.2 bits (92), Expect = 0.48, Method: Composition-based stats. Identities = 20/172 (11%), Positives = 57/172 (33%), Gaps = 15/172 (8%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY--DQKKQEEQDL 62 +I LK R + + ++ PSV+ + KL++ + Y + +L Sbjct: 27 MKDEIDSLKYRVSYLTDELNSRPSVEDFRKLSQAVKELQDTNKTYENYMTQTIDSAKTEL 86 Query: 63 HTVIGDHNSD--SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +I D S++ + I + ++ ++ + P ++ + + Sbjct: 87 GKMIEGGKKDVKSQMEETTLSINQVIRAQNTLMDKKVFDMTRPTFEFNEMKRSVTVINEQ 146 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 + ++ + W ++ + D+G + + I + Sbjct: 147 NAV-----------IEKKLDKIFTWIAGFINEAFPDNGRCRITLEKIFESHI 187 >gi|222056398|ref|YP_002538760.1| Class I peptide chain release factor [Geobacter sp. FRC-32] gi|221565687|gb|ACM21659.1| Class I peptide chain release factor [Geobacter sp. FRC-32] Length = 108 Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 38/72 (52%), Positives = 49/72 (68%), Gaps = 1/72 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + ++I DI+++ RASG GGQH NTTDSAVRI H+PTGI+V + +SQ QNR AM Sbjct: 1 MTMEIKETDIKVEFYRASGPGGQHRNTTDSAVRIRHLPTGIVVQAAENRSQWQNRELAMS 60 Query: 272 VLRARLYDVERK 283 L+ L ERK Sbjct: 61 RLQQALIKRERK 72 >gi|320352217|ref|YP_004193556.1| ABC transporter-like protein [Desulfobulbus propionicus DSM 2032] gi|320120719|gb|ADW16265.1| ABC transporter related protein [Desulfobulbus propionicus DSM 2032] Length = 666 Score = 40.2 bits (92), Expect = 0.49, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 26/59 (44%), Gaps = 4/59 (6%) Query: 9 ICDLKNRFAEIELRMSESP---SVDAYIKLTEEYAAISP-IISKISIYDQKKQEEQDLH 63 I ++R AE+E M++ + + ++EY + + +++ +Q + + Sbjct: 600 IERYESRKAELEALMADPDLYGDQERWSATSKEYGQVERHLERAYQRWEEAQQAIEAIE 658 >gi|168033750|ref|XP_001769377.1| predicted protein [Physcomitrella patens subsp. patens] gi|162679297|gb|EDQ65746.1| predicted protein [Physcomitrella patens subsp. patens] Length = 595 Score = 40.2 bits (92), Expect = 0.50, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+I+ +SE+ SV KL+E A +S ++ I + + E +D I D Sbjct: 392 DEIQARIAQIKKELSETDSVYDTEKLSERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 451 Query: 70 NS 71 + Sbjct: 452 KN 453 >gi|121716020|ref|XP_001275619.1| dynactin, putative [Aspergillus clavatus NRRL 1] gi|119403776|gb|EAW14193.1| dynactin, putative [Aspergillus clavatus NRRL 1] Length = 1386 Score = 40.2 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 15/129 (11%), Positives = 41/129 (31%), Gaps = 7/129 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQ- 60 K++ + + + E+E +E+ S+ L E A + +E Q Sbjct: 394 RKKLKETEAKLEEVERLQAENDSILEMAALDREMAE--ETADAFRHECELLRARVEELQL 451 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L + ++ + + + + E L+ +D + L+ + Sbjct: 452 ELDILKEENEELGQTMSPEERSSHGWLQMEKTNERLREALIRLRDMTQQQESDLKDQIKE 511 Query: 121 GGSEAALFV 129 + + Sbjct: 512 LEQDLEDYA 520 >gi|46128916|ref|XP_388962.1| hypothetical protein FG08786.1 [Gibberella zeae PH-1] Length = 2291 Score = 40.2 bits (92), Expect = 0.51, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 42/101 (41%), Gaps = 7/101 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E +S+ +A K+T+ I+ + + ++ Sbjct: 2026 IMVLQEQLQAREQRIEELEQSLSK-TDPEASTKITKR----DDEITWLRELLAVR--HEN 2078 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 L +I SDS RD + + ++ ++ E E + Sbjct: 2079 LQDIIAALQSDSFDRDAVKDAAIRLKANLQMEEQERERAMN 2119 >gi|328544687|ref|YP_004304796.1| ABC transporter ATPase [polymorphum gilvum SL003B-26A1] gi|326414429|gb|ADZ71492.1| ABC transporter, ATPase subunit [Polymorphum gilvum SL003B-26A1] Length = 603 Score = 40.2 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 7 KQICDLKNRFAEIELRMSESP----SVDAYIKLTEEYAAISPIISKISI-YDQKKQEEQD 61 + I L + +++ M++ + D + +L+ E ++ + + + +++ Sbjct: 541 ETIEKLDAQLEKLQADMADPDLYSRNPDRFARLSAEITKLTEEKDAAEEQWLELEMLKEE 600 Query: 62 LH 63 Sbjct: 601 AE 602 >gi|85105974|ref|XP_962075.1| hypothetical protein NCU05304 [Neurospora crassa OR74A] gi|28923669|gb|EAA32839.1| conserved hypothetical protein [Neurospora crassa OR74A] Length = 485 Score = 40.2 bits (92), Expect = 0.52, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 1/115 (0%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPII-SKISIYDQKKQEEQDLHT 64 KQI DLK + EI+ + + + K + A + I + Y + Sbjct: 171 QKQIDDLKAKIKEIKDSLEDPEAKALSEKYNKLQAELDAIKAEQDEAYKNLSSLRDERTK 230 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + + E +KE + E E + + + E R Sbjct: 231 LQQLQSEKYQAIKKLKDEYYGAKKEFAKWEREQREKARERQQAERERIAKERRME 285 >gi|148252694|ref|YP_001237279.1| class I peptide chain release factor domain-containing protein [Bradyrhizobium sp. BTAi1] gi|146404867|gb|ABQ33373.1| putative Class I peptide chain release factor domain protein [Bradyrhizobium sp. BTAi1] Length = 207 Score = 40.2 bits (92), Expect = 0.53, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 2/90 (2%) Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 ++ G + V D+ D+R ++ RA G GGQH Sbjct: 67 RWTQGPLLWVCRSPLRPHHGRKNWFVGI-VDLPLPHQVPDLAAADVRCESFRAGGPGGQH 125 Query: 237 VNTTDSAVRITHIPTG-IMVTSSEKSQHQN 265 N T+SAVR H+PTG + +SQH+N Sbjct: 126 QNKTESAVRAIHLPTGLTAIARDGRSQHRN 155 >gi|283780964|ref|YP_003371719.1| peptide chain release factor I [Pirellula staleyi DSM 6068] gi|283439417|gb|ADB17859.1| Class I peptide chain release factor [Pirellula staleyi DSM 6068] Length = 191 Score = 40.2 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 34/93 (36%), Positives = 45/93 (48%), Gaps = 2/93 (2%) Query: 195 GRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM 254 G V S A V P A + ++ + +I+ R G GGQH N ++AV ITH PTG+ Sbjct: 14 GEVLASLAMVDA-PHPAALPLEKLARECQIEFTRRGGPGGQHRNKVETAVVITHQPTGLA 72 Query: 255 -VTSSEKSQHQNRLRAMKVLRARLYDVERKRMA 286 S +SQ NR A + LR L R R Sbjct: 73 GQASETRSQDHNREEAYQRLRIELATGLRTRRE 105 >gi|224104681|ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|222849933|gb|EEE87480.1| predicted protein [Populus trichocarpa] Length = 586 Score = 40.2 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|224132004|ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|222837676|gb|EEE76041.1| predicted protein [Populus trichocarpa] Length = 587 Score = 40.2 bits (92), Expect = 0.55, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|328856522|gb|EGG05643.1| hypothetical protein MELLADRAFT_116786 [Melampsora larici-populina 98AG31] Length = 1443 Score = 40.2 bits (92), Expect = 0.56, Method: Composition-based stats. Identities = 14/128 (10%), Positives = 44/128 (34%), Gaps = 5/128 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ--- 60 L + + +++ E+E ++ + +K + A ++ +I + +E + Sbjct: 406 LMESRRNEDRDKIRELEKVKEDTEDWNNVVK-PKLQAKLNECTEEIKALKKLNKELEASQ 464 Query: 61 -DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + D + + E+ L + + L + L + ++ R Sbjct: 465 QEAENRLADFSDEVELATLDKEMAEERLDQTEVLMVTMKEELENLKVELSALKEIQDRIE 524 Query: 120 TGGSEAAL 127 G + + Sbjct: 525 NGDTNDSD 532 >gi|240278808|gb|EER42314.1| beta-glucosidase [Ajellomyces capsulatus H143] Length = 2805 Score = 40.2 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I+ + + D Sbjct: 2491 IMVLQDQLQQREGRIEELEQELAAID--KDAPAKVKER---ETEINWLRELLGVR--LDD 2543 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2544 LQDIINTLSQPSFNQQAVRDAAIRLKANMQMEQQEKERAMSGGNGNGSQQF 2594 >gi|90578612|ref|ZP_01234422.1| putative ABC transporter, ATP-binding protein [Vibrio angustum S14] gi|90439445|gb|EAS64626.1| putative ABC transporter, ATP-binding protein [Vibrio angustum S14] Length = 644 Score = 40.2 bits (92), Expect = 0.57, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++I DL+N A+I+ ++++ T+ A ++ + ++ + ++L + Sbjct: 584 QKIEDLENEIAKIQEQINDPAFFSDPKNDTQ--ATLTGLAKLEEEFEVAFERWEELEAMQ 641 Query: 67 GD 68 + Sbjct: 642 KE 643 >gi|326469360|gb|EGD93369.1| peptidyl-tRNA hydrolase [Trichophyton tonsurans CBS 112818] gi|326483473|gb|EGE07483.1| hypothetical protein TEQG_06610 [Trichophyton equinum CBS 127.97] Length = 191 Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 45/87 (51%), Gaps = 3/87 (3%) Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 L + I +I ++ SG GGQ +N T SAV++ HIPT +V + +SQ QN Sbjct: 39 LAKQMPPRPTIDESEITGTYLKGSGPGGQKINKTSSAVQLIHIPTNTVVKCQATRSQSQN 98 Query: 266 RLRAMKVLRARLYDVERKRMANERSAN 292 R A ++L ++ +E + R+A Sbjct: 99 RKIAKRILAEKIELLE--KGEQSRAAI 123 >gi|88810356|ref|ZP_01125613.1| probable ATP-binding component of ABC transporter [Nitrococcus mobilis Nb-231] gi|88791986|gb|EAR23096.1| probable ATP-binding component of ABC transporter [Nitrococcus mobilis Nb-231] Length = 641 Score = 39.8 bits (91), Expect = 0.58, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYI-KLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++I L+ + E++ R+S+ + + + A + +++ ++ E +D+ Sbjct: 576 ERIEVLEAKVGELQARISDPAFYNEPQTTIQKTLAELDTRQTELDRALERWAELEDMKAA 635 Query: 66 IG 67 + Sbjct: 636 LE 637 >gi|39996074|ref|NP_952025.1| peptidyl-tRNA hydrolase domain-containing protein [Geobacter sulfurreducens PCA] gi|39982839|gb|AAR34298.1| peptidyl-tRNA hydrolase domain protein [Geobacter sulfurreducens PCA] gi|298505090|gb|ADI83813.1| hydrolase, putative [Geobacter sulfurreducens KN400] Length = 107 Score = 39.8 bits (91), Expect = 0.59, Method: Composition-based stats. Identities = 42/72 (58%), Positives = 51/72 (70%), Gaps = 1/72 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + VDI DI+++ RASG GGQH NTTDSAVRI H+PTGI+V S +SQ QNR +AM+ Sbjct: 1 MTVDIRDADIKVEYYRASGPGGQHRNTTDSAVRIRHLPTGIVVQASESRSQAQNREKAME 60 Query: 272 VLRARLYDVERK 283 LR L ERK Sbjct: 61 RLRIALEKRERK 72 >gi|323488391|ref|ZP_08093638.1| hypothetical protein GPDM_03575 [Planococcus donghaensis MPA1U2] gi|323397898|gb|EGA90697.1| hypothetical protein GPDM_03575 [Planococcus donghaensis MPA1U2] Length = 479 Score = 39.8 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 2/59 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ L + E+ +++++ + D K+ + I + I +QK +E + L Sbjct: 62 KLDQLTAKIEELNTQITDTETKISDVQAKIDKTKVEIDELKKSIEELEQKIEEREGLLK 120 >gi|298207258|ref|YP_003715437.1| glutamyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] gi|83849894|gb|EAP87762.1| glutamyl-tRNA synthetase [Croceibacter atlanticus HTCC2559] Length = 1146 Score = 39.8 bits (91), Expect = 0.60, Method: Composition-based stats. Identities = 7/73 (9%), Positives = 30/73 (41%), Gaps = 3/73 (4%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 + + L + E+ + + +A +L +E+ + + +++ ++ ++ + Sbjct: 656 EDLEKLAQKQEELSKNDGDENTKEAQEELNKEFKKLQ---EDLKDLEEENKDLKEPMDIS 712 Query: 67 GDHNSDSEIRDLA 79 D + I++ Sbjct: 713 RDEEKEESIKEDQ 725 >gi|320353117|ref|YP_004194456.1| ABC transporter-like protein [Desulfobulbus propionicus DSM 2032] gi|320121619|gb|ADW17165.1| ABC transporter related protein [Desulfobulbus propionicus DSM 2032] Length = 611 Score = 39.8 bits (91), Expect = 0.61, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISK-ISIYDQKKQEEQ 60 ++I + R E+E M+ + +L E + + +D+ +Q Q Sbjct: 551 MEERILAAEARLGELEALMASPEVMANPAQLHRYWEEQQELQTKTEQLYDRWDELEQRRQ 610 >gi|325090062|gb|EGC43372.1| myosin class II heavy chain [Ajellomyces capsulatus H88] Length = 2442 Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I+ + + D Sbjct: 2128 IMVLQDQLQQREGRIEELEQELAAID--KDAPAKVKER---ETEINWLRELLGVR--LDD 2180 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2181 LQDIINTLSQPSFNQQAVRDAAIRLKANMQMEQQEKERAMSGGNGNGSQQF 2231 >gi|270692598|ref|ZP_06222918.1| peptide chain release factor 1 [Haemophilus influenzae HK1212] gi|270316067|gb|EFA28088.1| peptide chain release factor 1 [Haemophilus influenzae HK1212] Length = 32 Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 21/30 (70%) Query: 328 LEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 ++ V+ G ID++I P++T +QA + + SE Sbjct: 1 MDEVMNGKIDELIQPIITEYQADQLAALSE 30 >gi|145594573|ref|YP_001158870.1| class I peptide chain release factor [Salinispora tropica CNB-440] gi|145303910|gb|ABP54492.1| Class I peptide chain release factor [Salinispora tropica CNB-440] Length = 202 Score = 39.8 bits (91), Expect = 0.62, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 53/139 (38%), Gaps = 2/139 (1%) Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDI 217 G Y+ ++ ++G GV + +G Q + Sbjct: 50 GTYRSVLVRLTGTGVEAFAARWTGTLCWQAPSPYRTGHGRKNWYVAARQCEVDVPVTPFT 109 Query: 218 PLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRAR 276 D+ + +R G GGQH N +AVR TH PTG +V E+ NR A+++LR R Sbjct: 110 E-ADVEVLAVRTGGPGGQHRNKASTAVRATHRPTGTVVVVDTERQLSLNRSIALRLLRQR 168 Query: 277 LYDVERKRMANERSANRKL 295 + + + R+ Sbjct: 169 ITAGDEAARRALVAIRRRA 187 >gi|125528646|gb|EAY76760.1| hypothetical protein OsI_04716 [Oryza sativa Indica Group] Length = 246 Score = 39.8 bits (91), Expect = 0.63, Method: Composition-based stats. Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + D + + T +ASG GGQH N +SAVR+ H PTGI+ ++SQH NR A+ Sbjct: 77 MSDDELMGQCEMGTFKASGPGGQHRNKRESAVRLRHRPTGIIAQAVEDRSQHMNRASALS 136 Query: 272 VLRARLYDVERKRMANE 288 LR + RK + E Sbjct: 137 RLRTLIALKVRKPINLE 153 >gi|330445994|ref|ZP_08309646.1| ATP-binding protein with possible role in replication [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490185|dbj|GAA04143.1| ATP-binding protein with possible role in replication [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 642 Score = 39.8 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 8/62 (12%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++I +L+N AE++ ++++ T+ A ++ + + ++ + ++L + Sbjct: 582 QKIENLENEIAELQEKINDPDFFANPSNDTQ--AILTHLAEIETEFEVAFERWEELEAMQ 639 Query: 67 GD 68 + Sbjct: 640 KE 641 >gi|297826149|ref|XP_002880957.1| CPN60A [Arabidopsis lyrata subsp. lyrata] gi|297326796|gb|EFH57216.1| CPN60A [Arabidopsis lyrata subsp. lyrata] Length = 587 Score = 39.8 bits (91), Expect = 0.64, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|37523609|ref|NP_926986.1| hypothetical protein glr4040 [Gloeobacter violaceus PCC 7421] gi|35214614|dbj|BAC91981.1| glr4040 [Gloeobacter violaceus PCC 7421] Length = 125 Score = 39.8 bits (91), Expect = 0.69, Method: Composition-based stats. Identities = 34/103 (33%), Positives = 58/103 (56%), Gaps = 14/103 (13%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRL 267 A +D + D ++ + ASG GGQH N T+S VR+TH P+G++V+++E +SQHQNR Sbjct: 12 PAYPLDREALERDCTLEFVIASGPGGQHRNKTESGVRLTHRPSGVVVSATERRSQHQNRE 71 Query: 268 RAMKVLRARLYDVER-------------KRMANERSANRKLQI 297 A + + A+L D++R ++ + + R+ I Sbjct: 72 VAFERMAAKLADLQRVRAPRKPTRKPRAAKLRDLEAKKRRSAI 114 >gi|307292776|ref|ZP_07572622.1| ABC transporter related protein [Sphingobium chlorophenolicum L-1] gi|306880842|gb|EFN12058.1| ABC transporter related protein [Sphingobium chlorophenolicum L-1] Length = 561 Score = 39.8 bits (91), Expect = 0.71, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I D +RF EI + M++ P + L EE + I + + + + + Sbjct: 101 IADKLDRFNEISMIMADPPEDVDFDALMEEMGTLQEQIDAVDGW-TLDNQLEIAMEALRC 159 Query: 69 HNSD 72 SD Sbjct: 160 PPSD 163 >gi|226320895|ref|ZP_03796446.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] gi|226233667|gb|EEH32397.1| Peptide chain release factor 1 [Borrelia burgdorferi 29805] Length = 81 Score = 39.8 bits (91), Expect = 0.72, Method: Composition-based stats. Identities = 10/76 (13%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTE---EYAAISPIISKISIYDQKKQEEQ 60 + +++ ++ IE ++ + + K ++ EY + I +K Y++ + Sbjct: 1 MLLEKLNSATSKIKLIEEKLQDINLIKDQKKYSKIIKEYTYLEKINTKKIEYEKILSQIN 60 Query: 61 DLHTVIGDHNSDSEIR 76 D T++ + Sbjct: 61 DTKTILEKEDQQEMKE 76 >gi|332701466|ref|ZP_08421554.1| ABC transporter related protein [Desulfovibrio africanus str. Walvis Bay] gi|332551615|gb|EGJ48659.1| ABC transporter related protein [Desulfovibrio africanus str. Walvis Bay] Length = 659 Score = 39.8 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 21/55 (38%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 I L+ AE+ R+S + + A ++ I S + + +E + Sbjct: 591 IEALETEQAELNARLSSPGLYSDPQSVQKVQARMAEIESGLDRALARWEELESAQ 645 >gi|189426554|ref|YP_001953731.1| class I peptide chain release factor [Geobacter lovleyi SZ] gi|189422813|gb|ACD97211.1| Class I peptide chain release factor [Geobacter lovleyi SZ] Length = 107 Score = 39.8 bits (91), Expect = 0.74, Method: Composition-based stats. Identities = 39/85 (45%), Positives = 51/85 (60%), Gaps = 1/85 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + ++I DIR++ RASG GGQH NTTDSAVRI H+PTGI+V + +SQ +NR AM+ Sbjct: 1 MSIEINETDIRVEFYRASGPGGQHRNTTDSAVRIRHLPTGIVVHAAENRSQLRNREVAME 60 Query: 272 VLRARLYDVERKRMANERSANRKLQ 296 LR L R + K Q Sbjct: 61 RLRLALEKRNRVEKKRMATKVPKGQ 85 >gi|291533126|emb|CBL06239.1| hypothetical protein MHY_13580 [Megamonas hypermegale ART12/1] Length = 121 Score = 39.8 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 11/95 (11%), Positives = 30/95 (31%), Gaps = 1/95 (1%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIE 82 M E D + + ++ + + + Y + +++ + D + + Sbjct: 1 MGEPTFWDDPDQAQKITQELNGVKAGVDKYKNILHKFEEMQILWEMGMEDKD-ETVCDDV 59 Query: 83 VLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 I++ +E LLL D + + Sbjct: 60 EAEIKEINEAIEQLELELLLSGKYDANNAIFDSTC 94 >gi|145351791|ref|XP_001420246.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144580480|gb|ABO98539.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 1109 Score = 39.8 bits (91), Expect = 0.75, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 58/137 (42%), Gaps = 6/137 (4%) Query: 7 KQICDLKNRFAEIELRM--SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +++ +++N AE+ ++ + +A +L E A+ + I+ I + +++ +E ++ Sbjct: 521 EKLANMRNERAELRAQLDQANEAFHEANDRLESERASKADIVDTIQMLERQLKESKEA-- 578 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124 + ++ L + + +++ EL+ + K + + L+ A G++ Sbjct: 579 --AIASDNATTDKLDDLTAIQLQELRDELQQVVVLEQKLKRAEAAHAEELKETAEQNGAD 636 Query: 125 AALFVGDLFRMYERYAA 141 + + L R Sbjct: 637 ISEWQNKLHEADSRAGE 653 >gi|85115685|ref|XP_964921.1| hypothetical protein NCU09104 [Neurospora crassa OR74A] gi|28926718|gb|EAA35685.1| predicted protein [Neurospora crassa OR74A] Length = 2300 Score = 39.4 bits (90), Expect = 0.77, Method: Composition-based stats. Identities = 18/116 (15%), Positives = 47/116 (40%), Gaps = 7/116 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E ++ ++ +A K+++ I + + D Sbjct: 1982 IMVLQEQLQARELRIEELEQQLEKAD-PEAETKISKR----DDEIIWLRELLAVR--HSD 2034 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 L +IG +SD+ +D + + ++ ++ E E + + + IR Sbjct: 2035 LQDIIGALSSDNYDKDAVRDAAIRLKANLQMEEQERERAMNGGSAINLPNIAATIR 2090 >gi|78222830|ref|YP_384577.1| class I peptide chain release factor [Geobacter metallireducens GS-15] gi|78194085|gb|ABB31852.1| Class I peptide chain release factor [Geobacter metallireducens GS-15] Length = 107 Score = 39.4 bits (90), Expect = 0.79, Method: Composition-based stats. Identities = 28/63 (44%), Positives = 40/63 (63%), Gaps = 1/63 (1%) Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 +I D++ + R SG GGQH N T+S VRI H+PTG++V +SQ +NR A++ LR Sbjct: 3 EINEADLKFEFYRGSGPGGQHRNVTESGVRIRHVPTGVVVQACESRSQARNREIALERLR 62 Query: 275 ARL 277 L Sbjct: 63 QIL 65 >gi|309812176|ref|ZP_07705934.1| ATP-binding cassette protein, ChvD family [Dermacoccus sp. Ellin185] gi|308433863|gb|EFP57737.1| ATP-binding cassette protein, ChvD family [Dermacoccus sp. Ellin185] Length = 560 Score = 39.4 bits (90), Expect = 0.80, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 QI +RF EI M E + + L EE + I +D + + + Sbjct: 95 QIKVDLDRFNEISAEMGEPDA--DFDALMEEMGKLQEKIDAADAWD-IDSQLEQAMDALR 151 Query: 68 DHNSDSE 74 D++ Sbjct: 152 CPPGDAD 158 >gi|94496415|ref|ZP_01302992.1| ABC transporter related protein [Sphingomonas sp. SKA58] gi|94424161|gb|EAT09185.1| ABC transporter related protein [Sphingomonas sp. SKA58] Length = 561 Score = 39.4 bits (90), Expect = 0.82, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D +RF EI + M++ P + L EE + I + + + + Sbjct: 101 MADKLDRFNEISMIMADPPEDADFDALMEEMGTLQEQIDAADGW-TLDNQLEIAMEALRC 159 Query: 69 HNSD 72 SD Sbjct: 160 PPSD 163 >gi|332594835|emb|CCA89251.1| transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization [Kluyveromyces marxianus] gi|332594847|emb|CCA89262.1| transmembrane actin-binding protein involved in membrane cytoskeleton assembly and cell polarization [Kluyveromyces marxianus] Length = 706 Score = 39.4 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 9 ICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAI-SPIISKISIYDQKKQEEQDLHTVI 66 + R E+E + ++ + Y L + Y+ + ++ + + + + D + Sbjct: 523 LEQYDKRVQELESELEAQKEFKEKYQSLAKLYSQLRQEHLNVLKKVKKLQDDLNDSRNEV 582 Query: 67 GDHNSDS 73 D ++ Sbjct: 583 SDLKKEA 589 >gi|302664659|ref|XP_003023957.1| myosin class II heavy chain (MHC), putative [Trichophyton verrucosum HKI 0517] gi|291187980|gb|EFE43339.1| myosin class II heavy chain (MHC), putative [Trichophyton verrucosum HKI 0517] Length = 2417 Score = 39.4 bits (90), Expect = 0.83, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2134 IMVLQDQLQQREGRIEELEQELSTIDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2186 Query: 62 LHTVI 66 L +I Sbjct: 2187 LRDLI 2191 >gi|118587642|ref|ZP_01545052.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614] gi|118439264|gb|EAV45895.1| ABC transporter, ATP-binding protein [Stappia aggregata IAM 12614] Length = 603 Score = 39.4 bits (90), Expect = 0.85, Method: Composition-based stats. Identities = 6/60 (10%), Positives = 23/60 (38%), Gaps = 4/60 (6%) Query: 7 KQICDLKNRFAEIELRMSES----PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 + I L+ R ++ M++ + D + K++++ ++ + + + Sbjct: 543 ETIEKLEARLETLQAEMNDPQLYVKNPDKFAKISQQITDLTAEKDAAEEQWLELEMLNEA 602 >gi|294786641|ref|ZP_06751895.1| ABC transporter, ATP-binding protein [Parascardovia denticolens F0305] gi|315226229|ref|ZP_07868017.1| ABC superfamily ATP binding cassette transporter, ABC protein [Parascardovia denticolens DSM 10105] gi|294485474|gb|EFG33108.1| ABC transporter, ATP-binding protein [Parascardovia denticolens F0305] gi|315120361|gb|EFT83493.1| ABC superfamily ATP binding cassette transporter, ABC protein [Parascardovia denticolens DSM 10105] Length = 559 Score = 39.4 bits (90), Expect = 0.88, Method: Composition-based stats. Identities = 10/66 (15%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF +I M+ + + L +E + I + +D + + + Sbjct: 95 DIQQKVRRFNQIGEEMANPDA--DFDALMKEMGELQTEIDAANGWD-LESQLSQAMDALQ 151 Query: 68 DHNSDS 73 + D+ Sbjct: 152 CPDPDT 157 >gi|168005024|ref|XP_001755211.1| predicted protein [Physcomitrella patens subsp. patens] gi|162693804|gb|EDQ80155.1| predicted protein [Physcomitrella patens subsp. patens] Length = 550 Score = 39.4 bits (90), Expect = 0.90, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 1/71 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ S + +++ R A+I+ ++E+ SV KL+E A +S ++ I + + E + Sbjct: 339 MIADSASK-DEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATETELE 397 Query: 61 DLHTVIGDHNS 71 D I D + Sbjct: 398 DRKLRIEDAKN 408 >gi|203459047|ref|YP_002224203.1| gp204 [Mycobacterium phage ScottMcG] gi|197312494|gb|ACH62849.1| gp204 [Mycobacterium phage ScottMcG] Length = 118 Score = 39.4 bits (90), Expect = 0.91, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%) Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYD 279 D ++T R SG GGQ+ N D+AVRI H P+G + + E+SQ QN+ A + + Sbjct: 13 DCVVETKRGSGKGGQNRNKRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAESSKF 72 Query: 280 VERKRMANERSANRKLQI 297 + K Q+ Sbjct: 73 QLWLKRQVANDDLIKAQV 90 >gi|261403322|ref|YP_003247546.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] gi|261370315|gb|ACX73064.1| AAA family ATPase, CDC48 subfamily [Methanocaldococcus vulcanius M7] Length = 903 Score = 39.4 bits (90), Expect = 0.92, Method: Composition-based stats. Identities = 10/91 (10%), Positives = 24/91 (26%), Gaps = 5/91 (5%) Query: 6 HKQICDLKNR----FAEIELRMSESPSVDAYIKLTEEYAA-ISPIISKISIYDQKKQEEQ 60 ++I ++ I + D KL + ++ + I + + + Sbjct: 743 KEKIEAVEKEVDNFLEIINKEELKPSEKDEAQKLAKYLKDILNKLKEMIDNIYELENKLN 802 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIR 91 L + D I+ I Sbjct: 803 TLKDQVSAEEIDEIIKTTQNILQRFTTSLDE 833 >gi|308049602|ref|YP_003913168.1| ABC transporter [Ferrimonas balearica DSM 9799] gi|307631792|gb|ADN76094.1| ABC transporter related protein [Ferrimonas balearica DSM 9799] Length = 640 Score = 39.4 bits (90), Expect = 0.93, Method: Composition-based stats. Identities = 7/59 (11%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 8 QICDLKNRFAEIELRMSESPSVD-AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++ L+ ++ +++E D + A ++ + K +Q ++L + Sbjct: 581 KLETLEAEIESLQAQIAEPGFFDGDSQAVN---AVLTRLAEKEQELEQDFARWEELEAM 636 >gi|269955889|ref|YP_003325678.1| ABC transporter-like protein [Xylanimonas cellulosilytica DSM 15894] gi|269304570|gb|ACZ30120.1| ABC transporter related protein [Xylanimonas cellulosilytica DSM 15894] Length = 560 Score = 39.4 bits (90), Expect = 0.95, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L E + I ++ + + + Sbjct: 96 IKAKVDRFNEISTLMAEPDA--DFDALLAEMGELQEAIDHADAWE-LDSQLEQAMDALRC 152 Query: 69 HNSDSE 74 D++ Sbjct: 153 PPPDAD 158 >gi|256848117|ref|ZP_05553561.1| ABC transporter ATP-binding component [Lactobacillus coleohominis 101-4-CHN] gi|256715177|gb|EEU30154.1| ABC transporter ATP-binding component [Lactobacillus coleohominis 101-4-CHN] Length = 645 Score = 39.4 bits (90), Expect = 0.96, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + L+ + +IE +MS+ KL++ + + DQ ++ + + Sbjct: 586 LDQLQAQHDQIEQQMSDPEIATDIAKLSDLQKELE---QCQTEMDQAEENWTSAAEQLEE 642 Query: 69 HN 70 N Sbjct: 643 FN 644 >gi|323447462|gb|EGB03381.1| hypothetical protein AURANDRAFT_205 [Aureococcus anophagefferens] Length = 1037 Score = 39.0 bits (89), Expect = 0.98, Method: Composition-based stats. Identities = 13/117 (11%), Positives = 41/117 (35%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + ++ + + E+ ++ E + Y ++ + I Y Q ++E++ Sbjct: 591 ILVTKSDLEEKNLAMQELRNKIEELQLHNEYQLRLKDMSYSEKIKEVTEKYMQDLEQEKN 650 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + ++ + +D E+ + + + E E Y + + R+ Sbjct: 651 KYELLREEKNDIEMECEERHRQMEDKHHHELQELENTYQQKIMLEVERYQQLAHERS 707 >gi|325066936|ref|ZP_08125609.1| putative ABC transporter ATP-binding protein [Actinomyces oris K20] Length = 560 Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI M++ + + L E + + + +D + + + Sbjct: 96 IKSKLDRYNEISAAMADPDA--DFDALMAEMGTLQDALDAANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E++ Sbjct: 153 PPPDAEVKH 161 >gi|326771882|ref|ZP_08231167.1| ABC transporter, ATP-binding protein [Actinomyces viscosus C505] gi|326638015|gb|EGE38916.1| ABC transporter, ATP-binding protein [Actinomyces viscosus C505] Length = 560 Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI M++ + + L E + + + +D + + + Sbjct: 96 IKSKLDRYNEISAAMADPDA--DFDALMAEMGTLQDALDAANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E++ Sbjct: 153 PPPDAEVKH 161 >gi|327293926|ref|XP_003231659.1| hypothetical protein TERG_07958 [Trichophyton rubrum CBS 118892] gi|326466287|gb|EGD91740.1| hypothetical protein TERG_07958 [Trichophyton rubrum CBS 118892] Length = 2334 Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2046 IMVLQDQLQQREGRIEELEQELSTIDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2098 Query: 62 LHTVI 66 L +I Sbjct: 2099 LRDLI 2103 >gi|317969669|ref|ZP_07971059.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CB0205] Length = 872 Score = 39.0 bits (89), Expect = 1.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 7/71 (9%) Query: 7 KQICDLKNRFAEIE-LRMS-----ESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEE 59 +QI +L R ++E ++S ++ S D +L +E A +S S ++ + ++K Sbjct: 411 EQIDELDRRILQLEMEKLSLGRESDAASKDRLERLEKELADLSEQQSALNAQWQKEKGSI 470 Query: 60 QDLHTVIGDHN 70 +L ++ + Sbjct: 471 DELSSIKEEIE 481 >gi|229815133|ref|ZP_04445470.1| hypothetical protein COLINT_02176 [Collinsella intestinalis DSM 13280] gi|229809363|gb|EEP45128.1| hypothetical protein COLINT_02176 [Collinsella intestinalis DSM 13280] Length = 126 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 33/77 (42%), Positives = 45/77 (58%), Gaps = 1/77 (1%) Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 + A + +D + D I RASG GGQ VNTTDSAVR+ H+P+GI+V +SQ QN Sbjct: 11 YAKWASMPIDELVRDCDIQAFRASGPGGQGVNTTDSAVRMRHVPSGIVVTARESRSQFQN 70 Query: 266 RLRAMKVLRARLYDVER 282 R ++ L+ L R Sbjct: 71 RASCLRKLKEELTRRAR 87 >gi|318041187|ref|ZP_07973143.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CB0101] Length = 872 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 7 KQICDLKNRFAEIE-LRMS-----ESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEE 59 +QI +L R ++E ++S ++ S D +L +E A +S S ++ + ++K Sbjct: 411 EQIDELDRRILQLEMEKLSLGRESDAASKDRLERLEKELADLSEQQSTLNAQWQKEKGSI 470 Query: 60 QDLHTVIGDHN 70 +L + + Sbjct: 471 DELGAIKEEIE 481 >gi|302497804|ref|XP_003010901.1| myosin class II heavy chain (MHC), putative [Arthroderma benhamiae CBS 112371] gi|291174447|gb|EFE30261.1| myosin class II heavy chain (MHC), putative [Arthroderma benhamiae CBS 112371] Length = 2339 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2056 IMVLQDQLQQREGRIEELEQELSTVDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2108 Query: 62 LHTVI 66 L +I Sbjct: 2109 LRDLI 2113 >gi|326479182|gb|EGE03192.1| myosin class II heavy chain [Trichophyton equinum CBS 127.97] Length = 2338 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2051 IMVLQDQLQQREGRIEELEQELSTIDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2103 Query: 62 LHTVI 66 L +I Sbjct: 2104 LRDLI 2108 >gi|281356039|ref|ZP_06242532.1| peptide chain release factor H [Victivallis vadensis ATCC BAA-548] gi|281317408|gb|EFB01429.1| peptide chain release factor H [Victivallis vadensis ATCC BAA-548] Length = 204 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 5/171 (2%) Query: 109 DKSCILEIRAGTGGSEAALF-VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167 K LEI +G G E L + R+ +++ L+ + + K ++ + Sbjct: 1 MKRLFLEISSGQGPEECELLVAKLMVRLTSELRREVRFREVALNGN-REKSLVKSVLFEL 59 Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTM 227 G G + G + + A + + E+ D D+ Sbjct: 60 EGEGAAVSVAPWLGTIQWIAASPFRPHHKRRNWYAGIRLFEAEPELAFDP--NDVEFSAS 117 Query: 228 RASGSGGQHVNTTDSAVRITHIPT-GIMVTSSEKSQHQNRLRAMKVLRARL 277 R+SG GGQHVNT+++ ++ H PT V E+SQ +NR A+ L A++ Sbjct: 118 RSSGPGGQHVNTSNTRIQAFHRPTGQCAVAGEERSQLRNRELALARLAAKV 168 >gi|1710807|sp|P08926|RUBA_PEA RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|1185390|gb|AAA87731.1| alphacpn60 precursor [Pisum sativum] Length = 587 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ S+ KL E A +S ++ I + + E +D I D Sbjct: 385 DELQSRVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 444 Query: 70 NS 71 + Sbjct: 445 KN 446 >gi|120553410|ref|YP_957761.1| ABC transporter related [Marinobacter aquaeolei VT8] gi|120323259|gb|ABM17574.1| ABC transporter related protein [Marinobacter aquaeolei VT8] Length = 648 Score = 39.0 bits (89), Expect = 1.1, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL-TEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ L+ + A +E +++ D KL +E ++ D + E ++ + Sbjct: 582 RMEQLQQKLATVEHNLADPGLYDDQQKLRLKEL--LAEQTELKRELDDVEAEWLEVSETV 639 Query: 67 GDHNSD 72 + ++ Sbjct: 640 ENLEAE 645 >gi|329297973|ref|ZP_08255309.1| ABC transporter ATPase component [Plautia stali symbiont] Length = 635 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ L+ R E++ +MS + + + + + ++L + Sbjct: 575 QKLEQLETRIGELQAQMSHPDFFSQPHD--KTQQVLDALAQAEQELETTFERWEELEAL 631 >gi|317130062|ref|YP_004096344.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475010|gb|ADU31613.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] Length = 968 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 35/59 (59%), Gaps = 9/59 (15%) Query: 7 KQICDLKNRFAEIELRMS---ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 ++I +L+++ AE+E +++ +S V+ ++ I ++++I+ +Q+ QE +D Sbjct: 808 ERIAELEDQIAELEEQLNELVDSSVVEELQRI------IEDLLAQIAALEQQVQELKDA 860 >gi|169838607|ref|ZP_02871795.1| peptide chain release factor 2 [candidate division TM7 single-cell isolate TM7a] Length = 61 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 119 GTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKF 178 G GG++A F L RMY R+A + +++ S D+ G K V I+G + R+ Sbjct: 1 GVGGTDAQDFAEMLERMYLRFAEKSSLEAKIVERSSGDEAGLKTSVIEINGPYAYGRLHS 60 Query: 179 E 179 E Sbjct: 61 E 61 >gi|171685041|ref|XP_001907462.1| hypothetical protein [Podospora anserina S mat+] gi|170942481|emb|CAP68133.1| unnamed protein product [Podospora anserina S mat+] Length = 2289 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 17/90 (18%) Query: 2 VFLSHKQICDLKNRFAEIELRMS-------------ESPSVDAYIKLTEEYAAISPIISK 48 + + +Q+ + + R E++ +++ + + L ++ + II+ Sbjct: 2016 IMVLQEQLQEREQRIEELDQKLAKVDPEAETKISKRDDEIIWLRELLAVRHSDLQDIIAA 2075 Query: 49 I--SIYDQ--KKQEEQDLHTVIGDHNSDSE 74 + YD+ K L + + E Sbjct: 2076 LGREDYDKNTVKDAAIRLKANLQMEEQERE 2105 >gi|326474277|gb|EGD98286.1| hypothetical protein TESG_05665 [Trichophyton tonsurans CBS 112818] Length = 2296 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2010 IMVLQDQLQQREGRIEELEQELSTIDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2062 Query: 62 LHTVI 66 L +I Sbjct: 2063 LRDLI 2067 >gi|329946376|ref|ZP_08293943.1| ATP-binding cassette protein, ChvD family [Actinomyces sp. oral taxon 170 str. F0386] gi|328527352|gb|EGF54350.1| ATP-binding cassette protein, ChvD family [Actinomyces sp. oral taxon 170 str. F0386] Length = 560 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +R+ EI M++ + + L E + + + +D + + + Sbjct: 96 IKSKLDRYNEISAAMADPDA--DFDALMAEMGTLQDALDAANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E+++ Sbjct: 153 PPPDAEVKN 161 >gi|332701205|ref|ZP_08421293.1| ABC transporter related protein [Desulfovibrio africanus str. Walvis Bay] gi|332551354|gb|EGJ48398.1| ABC transporter related protein [Desulfovibrio africanus str. Walvis Bay] Length = 657 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 8/69 (11%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISK-ISIYDQKKQEEQDLH- 63 + + R E+E +++ + +++LT EY + + ++ +L Sbjct: 589 LESIMARQTELETLLADPATYSKTEEFVRLTSEYKQAKEREEQLFMDFSSLEESITELER 648 Query: 64 ---TVIGDH 69 ++ + Sbjct: 649 RRDELLAEE 657 >gi|159491478|ref|XP_001703692.1| chaperonin 60A [Chlamydomonas reinhardtii] gi|158270541|gb|EDO96383.1| chaperonin 60A [Chlamydomonas reinhardtii] Length = 580 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ ++E+ SV KL+E A +S ++ I + + E +D I D Sbjct: 373 DEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDA 432 Query: 70 NS 71 + Sbjct: 433 KN 434 >gi|146172977|ref|XP_001018708.2| hypothetical protein TTHERM_00290910 [Tetrahymena thermophila] gi|146144917|gb|EAR98463.2| hypothetical protein TTHERM_00290910 [Tetrahymena thermophila SB210] Length = 890 Score = 39.0 bits (89), Expect = 1.2, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 2/64 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M+ S K+I +N+ +++ + +L +E + KI + +Q+K Q Sbjct: 119 MIMKSQKKIDMQENKIEDLQQELEYQK--QNVDQLNKERQKLKQETQKIQMIEQQKNLVQ 176 Query: 61 DLHT 64 + Sbjct: 177 SNYE 180 >gi|227510674|ref|ZP_03940723.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227189795|gb|EEI69862.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 652 Score = 39.0 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS----PIISKISIYDQKKQEEQD 61 Q+ +L IE +M++ + K ++ + I S ++QK + +D Sbjct: 591 ESQLDELSKSKNNIENQMAQPEVFNDLDKASDLQKKLEMVDQEIKETESKWEQKSLQLED 650 Query: 62 LH 63 + Sbjct: 651 IE 652 >gi|148909901|gb|ABR18037.1| unknown [Picea sitchensis] Length = 598 Score = 39.0 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+I+ ++E+ SV KL+E A +S ++ I + + E +D I D Sbjct: 396 DEIQARIAQIKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGATTEAELEDKQLRIEDA 455 Query: 70 NS 71 + Sbjct: 456 KN 457 >gi|2493647|sp|Q42694|RUBA_CHLRE RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|603913|gb|AAA98642.1| chaperonin alpha-like subunit [Chlamydomonas reinhardtii] Length = 580 Score = 39.0 bits (89), Expect = 1.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ ++E+ SV KL+E A +S ++ I + + E +D I D Sbjct: 373 DEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDA 432 Query: 70 NS 71 + Sbjct: 433 KN 434 >gi|326674132|ref|XP_698830.5| PREDICTED: pleckstrin homology-like domain family B member 1-like [Danio rerio] Length = 1713 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++ +LK R E+E ++ ES + E A + I ++ I +Q +++ +L + Sbjct: 937 KVDELKARITELEQQLQESKQEAEMERALLQGERQAEMEQIETETEIINQLQRKLTELES 996 Query: 65 VIGDHNSDS 73 I Sbjct: 997 SIQREKDKE 1005 >gi|224475860|ref|YP_002633466.1| putative ABC transporter ATP-binding protein [Staphylococcus carnosus subsp. carnosus TM300] gi|222420467|emb|CAL27281.1| putative ABC transporter ATP-binding protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 623 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 ++I + + R EIE M ++ D Y K+ + + S+ + E ++L Sbjct: 567 ERIEEAEIRLEEIEQEMVDAS--DDYTKIQTLNSEKETLESQYDQDMTRWSELEELKE 622 >gi|302840740|ref|XP_002951916.1| hypothetical protein VOLCADRAFT_105311 [Volvox carteri f. nagariensis] gi|300262817|gb|EFJ47021.1| hypothetical protein VOLCADRAFT_105311 [Volvox carteri f. nagariensis] Length = 536 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ ++E+ SV KL+E A +S ++ I + + E +D I D Sbjct: 329 EEIEMRIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEAELEDRKLRIEDA 388 Query: 70 NS 71 + Sbjct: 389 KN 390 >gi|302783859|ref|XP_002973702.1| hypothetical protein SELMODRAFT_99807 [Selaginella moellendorffii] gi|302787967|ref|XP_002975753.1| hypothetical protein SELMODRAFT_104038 [Selaginella moellendorffii] gi|300156754|gb|EFJ23382.1| hypothetical protein SELMODRAFT_104038 [Selaginella moellendorffii] gi|300158740|gb|EFJ25362.1| hypothetical protein SELMODRAFT_99807 [Selaginella moellendorffii] Length = 546 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ ++E+ SV KL+E A +S ++ I + + E +D I D Sbjct: 344 DEIQARIAQLKKELAETDSVYDTEKLSERIAKLSGGVAVIKVGAATEVELEDRKLRIEDA 403 Query: 70 NS 71 + Sbjct: 404 KN 405 >gi|85708035|ref|ZP_01039101.1| ABC transporter [Erythrobacter sp. NAP1] gi|85689569|gb|EAQ29572.1| ABC transporter [Erythrobacter sp. NAP1] Length = 557 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L RF + +M+E + + L +E A + I + + + + + Sbjct: 100 AELVERFNAVSAQMAEPDA--DFDALGDEMAELQTKIDAVDGW-TLDNQLEIAMEALRCP 156 Query: 70 NSDSEIRD 77 SD+ + + Sbjct: 157 PSDASVEN 164 >gi|315050003|ref|XP_003174376.1| hypothetical protein MGYG_04548 [Arthroderma gypseum CBS 118893] gi|311342343|gb|EFR01546.1| hypothetical protein MGYG_04548 [Arthroderma gypseum CBS 118893] Length = 2339 Score = 38.6 bits (88), Expect = 1.3, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2056 IMVLQDQLQQREGRIEELEQELSTMDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2108 Query: 62 LHTVI 66 L +I Sbjct: 2109 LRDLI 2113 >gi|291571204|dbj|BAI93476.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 2350 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 41/150 (27%), Gaps = 4/150 (2%) Query: 1 MVFLSHKQICDLKNRFAEIE-LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + L+ Q + N +++ M E + +L E+ A + + ++ E Sbjct: 885 LKMLADDQADSMAN-LKDLKRKEMQEITLKNEKQELEEKLAGLKDLELIRRRVNELIVEI 943 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 QDL I + N S + + +L D I + Sbjct: 944 QDLE--IQEKNCKSNYDYEVNNPFNYVCHIQTTYNGWFCHYVLLYDYSGSFPTIRMSPSS 1001 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEV 149 +G F Y W Sbjct: 1002 SGAGGKWKFNKISQEYYTIQTTYNGWFCHY 1031 >gi|225180872|ref|ZP_03734320.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1] gi|225168353|gb|EEG77156.1| ABC transporter related protein [Dethiobacter alkaliphilus AHT 1] Length = 641 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 8/63 (12%), Positives = 25/63 (39%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + ++I ++ R E+E ++ + Y +E+ + + + + +E Sbjct: 577 ILETEEEISRVEERINELEAELACPEVFEDYKLASEKGQEMEELKAMLEKLFASWEEYTI 636 Query: 62 LHT 64 L Sbjct: 637 LLE 639 >gi|239906239|ref|YP_002952979.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] gi|239796104|dbj|BAH75093.1| putative ABC transporter ATP-binding protein [Desulfovibrio magneticus RS-1] Length = 666 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 + L + +E+E M++ + + KL++EY+ +S ++ ++E DL Sbjct: 598 LETLLAKQSEVEAVMADPETYAQRELFSKLSKEYSDLSREAEDLLARMAVMEEEIADLEA 657 >gi|119946803|ref|YP_944483.1| ABC transporter ATP-binding protein [Psychromonas ingrahamii 37] gi|119865407|gb|ABM04884.1| ABC transporter ATP-binding protein [Psychromonas ingrahamii 37] Length = 638 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 11/77 (14%), Positives = 30/77 (38%), Gaps = 10/77 (12%) Query: 3 FLSHKQI-CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ- 60 S +++ L + EIE ++++ + K A ++ ++ + + +E + Sbjct: 564 LSSSEKLMEKLSQQLEEIEKQLADPALYEHAQK-----ARLTELLKQQGELKESLEEAEM 618 Query: 61 ---DLHTVIGDHNSDSE 74 D I ++ E Sbjct: 619 AWMDAQEKIELMEAEFE 635 >gi|55981833|ref|YP_145130.1| S-layer protein-like protein [Thermus thermophilus HB8] gi|55773246|dbj|BAD71687.1| S-layer protein-related protein [Thermus thermophilus HB8] Length = 439 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 21/156 (13%), Positives = 44/156 (28%), Gaps = 8/156 (5%) Query: 9 ICDLKNRFAEIELR-MSESPSVDAYIKLTEEYA-AISPIISKI----SIYDQKKQEEQDL 62 + L+ R +E R ++ V+A + EE + + + ++ +DL Sbjct: 180 LKTLEERLKALEARPQADPKEVEALRRAQEELKGRLEALEKARSAQEEALRRLEEALKDL 239 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + E+ + LEN + L + + R Sbjct: 240 PEATRLAQEAQDRLQALEPRLQRAEEGLEALENRVRSLEERLKALEAAQAQDQARLKALE 299 Query: 123 SEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDG 158 E A L R + + G Sbjct: 300 EEVAALKRAL--TPSRLPLHLGLALYQGDVQRDWHG 333 >gi|193216773|ref|YP_002000015.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1] gi|193002096|gb|ACF07311.1| massive surface protein MspC [Mycoplasma arthritidis 158L3-1] Length = 2719 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 6/55 (10%), Positives = 26/55 (47%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +++ + K+ E++ +++++ + +LT+E + + K+ + + Sbjct: 712 KERLDNAKSELEELKKKINDAYNDRNLEELTKELNKLEELKEKVESLETLATAVE 766 >gi|171689886|ref|XP_001909882.1| hypothetical protein [Podospora anserina S mat+] gi|170944905|emb|CAP71016.1| unnamed protein product [Podospora anserina S mat+] Length = 1341 Score = 38.6 bits (88), Expect = 1.4, Method: Composition-based stats. Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 6/133 (4%) Query: 6 HKQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLH 63 K+I DLK + +E + + + ++ K+ E II + Y ++QE DL Sbjct: 317 QKEIEDLKAKLRVLEKKRIEDREKLNNLEKIKGERDKFERIIQTLQIKYQPQQQEIADLR 376 Query: 64 TVIGDHNSD----SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + E+++ + + + E L + + KS LE+ Sbjct: 377 KQLKEAETRFYAVEEMQESHESALELATLDREMAEETAEVLKVELEALKQKSEELELEVE 436 Query: 120 TGGSEAALFVGDL 132 E A F + Sbjct: 437 ILREENAEFTKGM 449 >gi|213853036|ref|ZP_03382568.1| hypothetical protein SentesT_09356 [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 595 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 20/157 (12%), Positives = 48/157 (30%), Gaps = 8/157 (5%) Query: 9 ICDLKNRFAEIELRMSES-------PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + R E+ S+S + D Y L + ++ I+ + + +E + Sbjct: 353 LEAVNKRLQELNKERSKSLSYISCVSAFDKYRDLNKYLIDLTVEINALKQKLEVSREIGE 412 Query: 62 LHTVIGDHNSDS-EIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 L VI D + +I +I + K + + I + + L Sbjct: 413 LKEVITDKQQEKNDIVKSIKINRDYVVKTPGNIYSNIKEMFKVFVKNVLDKNGLLTTEQN 472 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 + G + ++ + + + D Sbjct: 473 KEGHLEYWAGLVNNQGQQTSESDGHSYQKILCMGYDI 509 >gi|84468288|dbj|BAE71227.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Length = 578 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 376 DELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 435 Query: 70 NS 71 + Sbjct: 436 KN 437 >gi|84468456|dbj|BAE71311.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Length = 588 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 386 DELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 445 Query: 70 NS 71 + Sbjct: 446 KN 447 >gi|84468438|dbj|BAE71302.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Length = 588 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 386 DELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 445 Query: 70 NS 71 + Sbjct: 446 KN 447 >gi|84468296|dbj|BAE71231.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468304|dbj|BAE71235.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] gi|84468426|dbj|BAE71296.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Length = 588 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 386 DELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 445 Query: 70 NS 71 + Sbjct: 446 KN 447 >gi|84468442|dbj|BAE71304.1| putative rubisco subunit binding-protein alpha subunit [Trifolium pratense] Length = 461 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L++R A+++ +SE+ SV KL E A +S ++ I + + E +D I D Sbjct: 259 DELQSRVAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 318 Query: 70 NS 71 + Sbjct: 319 KN 320 >gi|156050175|ref|XP_001591049.1| hypothetical protein SS1G_07674 [Sclerotinia sclerotiorum 1980] gi|154692075|gb|EDN91813.1| hypothetical protein SS1G_07674 [Sclerotinia sclerotiorum 1980 UF-70] Length = 631 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 6/142 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +S ++I L+ ++ M+ + L + + + Q Sbjct: 242 VSVERIKTLRKELEGLDKEMAVGGL--KIVNLQRRRENLKQLNDAVQQLKQVVNAVASCE 299 Query: 64 TVIG----DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 +++ + D+ I + + + + ++ L + +R Sbjct: 300 SMVENGEVEEALDAIDALEKLIAGEEMTSKPGQQKIQLRDLRGATALQGVNHDLDVLRFR 359 Query: 120 TGGSEAALFVGDLFRMYERYAA 141 G S A F+ L R+ Sbjct: 360 IGKSFEARFLQALLGDLRRHVE 381 >gi|289618213|emb|CBI54937.1| unnamed protein product [Sordaria macrospora] Length = 489 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 1/115 (0%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPII-SKISIYDQKKQEEQDLHT 64 KQI LK + EI+ + + + K + A + I + Y + Sbjct: 170 QKQIDVLKAKIKEIKDSLEDPEAKALSEKYNKLQAELDAIKAEQDEAYKNLSSLRDERTK 229 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 + + + + E +KE + E E + + + E R Sbjct: 230 LQQLQSEKYQAIKKLKDEYYGAKKEFAKWEREQREKYRERQQAERERIAKERRME 284 >gi|307103264|gb|EFN51526.1| hypothetical protein CHLNCDRAFT_59237 [Chlorella variabilis] Length = 539 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 32/62 (51%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++K R A+I+ ++E+ SV KL+E A ++ ++ I + + E +D I D Sbjct: 331 DEIKARIAQIKKELAETDSVYDTEKLSERIAKLAGGVAVIKVGAATEAELEDRKLRIEDA 390 Query: 70 NS 71 + Sbjct: 391 KN 392 >gi|296243002|ref|YP_003650489.1| chromosome segregation ATPase [Thermosphaera aggregans DSM 11486] gi|296095586|gb|ADG91537.1| Chromosome segregation ATPase [Thermosphaera aggregans DSM 11486] Length = 1057 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 14/85 (16%), Positives = 38/85 (44%), Gaps = 14/85 (16%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ------------ 54 +++ ++++R +E+E +++ + LT+E A + +I ++S Q Sbjct: 826 QRLSEIEDRLSELESQLASIE--NRIEGLTQEIALLQGMIDELSQQLQLVNTTLNGEISL 883 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLA 79 +Q Q+L +I + + + Sbjct: 884 LEQRIQELEQLISELRQQFDYLNSQ 908 >gi|227513690|ref|ZP_03943739.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus buchneri ATCC 11577] gi|227083009|gb|EEI18321.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus buchneri ATCC 11577] Length = 652 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 Q+ +L IE +M++ + K ++ + I KI ++QK + +D Sbjct: 591 ESQLDELSKSKNNIESQMAQPEVFNDLDKASDLQKKLEMIDQKIKETESKWEQKSLQLED 650 Query: 62 LH 63 + Sbjct: 651 IE 652 >gi|145514834|ref|XP_001443322.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124410700|emb|CAK75925.1| unnamed protein product [Paramecium tetraurelia] Length = 269 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 15/112 (13%), Positives = 45/112 (40%), Gaps = 1/112 (0%) Query: 8 QICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++ +L+NR E+E + ++ + D +L++ Y+ I +++ I I + Q+ Q+ Sbjct: 112 KVQELQNRIKELEAQQQNKQDNEDEESELSQAYSQIQQLVNTIKILQDEIQQLQEKLEQK 171 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + + + + + + + + + + K E+ Sbjct: 172 QNVIDGYDRQIQDKDKEIEEANQYIQELHGQLEEQTTNVEEKHKYLFDEVNT 223 >gi|116878616|ref|YP_357940.2| putative peptide chain release factor [Pelobacter carbinolicus DSM 2380] gi|114843252|gb|ABA89770.2| putative peptide chain release factor [Pelobacter carbinolicus DSM 2380] Length = 138 Score = 38.6 bits (88), Expect = 1.5, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 42/82 (51%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLR 268 + + I +D+ I +A G GGQH N T++AVRI H P+GI VT+SE+ Q + Sbjct: 26 PSRNGVMTINKQDLDITFFKAGGPGGQHRNKTETAVRIHHRPSGITVTASERRSRQANIE 85 Query: 269 AMKVLRARLYDVERKRMANERS 290 A+ + R++ + Sbjct: 86 HALERLAQRLEAMRRKPRRRIA 107 >gi|320531251|ref|ZP_08032230.1| ATP-binding cassette protein, ChvD family [Actinomyces sp. oral taxon 171 str. F0337] gi|320136518|gb|EFW28487.1| ATP-binding cassette protein, ChvD family [Actinomyces sp. oral taxon 171 str. F0337] Length = 560 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M++ + + L E + + + +D + + + Sbjct: 96 IKSKLDRFNEISAAMADPDA--DFDALMAEMGTLQDALDAANAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSEIRD 77 D+E+++ Sbjct: 153 PPPDAEVKN 161 >gi|123427528|ref|XP_001307273.1| hypothetical protein [Trichomonas vaginalis G3] gi|121888892|gb|EAX94343.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 580 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 46/124 (37%), Gaps = 16/124 (12%) Query: 6 HKQICDLKNRFAE---------------IELRMSESPSVDAYIKLTEEYA-AISPIISKI 49 K++ L+ R+ E +E + ++ KL ++ I+PI S++ Sbjct: 197 QKKVDALQQRYDELLTKFDETPKQREYFLEYMSQQHEFLEERAKLEKKLNVEIAPIKSEV 256 Query: 50 SIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 +K Q ++D ++ + + + +++ + E + K DD Sbjct: 257 EGLVKKIQLQKDTERLLEEAEKHRHQNESNSKKQKKGKEQPKHEEPSKHNKPQGKPADDQ 316 Query: 110 KSCI 113 + + Sbjct: 317 EEMM 320 >gi|315053701|ref|XP_003176225.1| hypothetical protein MGYG_00314 [Arthroderma gypseum CBS 118893] gi|311338071|gb|EFQ97273.1| hypothetical protein MGYG_00314 [Arthroderma gypseum CBS 118893] Length = 192 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%) Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLR 268 I +I ++ SG GGQ +N T SAV++ HIPT +V + +SQ QNR Sbjct: 42 QMPPRPTIDDSEITGTYLKGSGPGGQKINKTSSAVQLIHIPTNTVVKCQATRSQSQNRKI 101 Query: 269 AMKVLRARLYDVERKRM 285 A ++L ++ +E+ Sbjct: 102 AKRILAEKIELLEKGEQ 118 >gi|1351030|sp|P21239|RUB1_BRANA RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|289365|gb|AAA32979.1| 60-kDa chaperonin-60 alpha-polypeptide precursor [Brassica napus] Length = 546 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R ++++ +SE+ SV KL E A ++ ++ I + + E +D I D Sbjct: 344 DELQARISQLKKELSETDSVYDSEKLAERIAKLAGGVAVIKVGAATETELEDRKLRIEDA 403 Query: 70 NS 71 + Sbjct: 404 KN 405 >gi|255587664|ref|XP_002534347.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] gi|223525447|gb|EEF28034.1| rubisco subunit binding-protein alpha subunit, ruba, putative [Ricinus communis] Length = 501 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ ++E+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|5650721|emb|CAB51619.1| unnamed protein product [Ricinus communis] Length = 496 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ ++E+ SV KL E A +S ++ I + + E +D I D Sbjct: 327 DELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 386 Query: 70 NS 71 + Sbjct: 387 KN 388 >gi|134101|sp|P08824|RUBA_RICCO RecName: Full=RuBisCO large subunit-binding protein subunit alpha; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha Length = 495 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ ++E+ SV KL E A +S ++ I + + E +D I D Sbjct: 327 DELQARIAQLKRELAETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 386 Query: 70 NS 71 + Sbjct: 387 KN 388 >gi|325185474|emb|CCA19957.1| unnamed protein product putative [Albugo laibachii Nc14] Length = 152 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 1/100 (1%) Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 L + ED+ ++ SG GGQ +N + V + H PTGI V + N Sbjct: 26 LFQTRNFASAFREEDLNEQFVKGSGKGGQKINKVRNCVLLKHSPTGIQVRCQKTRCLDDN 85 Query: 266 RLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSER 305 R A K+L +L D+ + +K+Q +R + Sbjct: 86 RRIARKLLTEKLDDLYNGEKSVRNQKIQKIQKRKANRRAK 125 >gi|255556733|ref|XP_002519400.1| peptide chain release factor, putative [Ricinus communis] gi|223541467|gb|EEF43017.1| peptide chain release factor, putative [Ricinus communis] Length = 185 Score = 38.6 bits (88), Expect = 1.6, Method: Composition-based stats. Identities = 25/49 (51%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNR 266 + +DT +ASG GGQH N +SAVRI H+PTGI+ ++SQH+NR Sbjct: 1 MRQCEMDTYKASGPGGQHRNKRESAVRIKHLPTGIISQAVEDRSQHKNR 49 >gi|193216694|ref|YP_001999936.1| massive surface protein MspB [Mycoplasma arthritidis 158L3-1] gi|193002017|gb|ACF07232.1| massive surface protein MspB [Mycoplasma arthritidis 158L3-1] Length = 1934 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 27/55 (49%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +Q+ + K+ +++ ++S++ + +LT+E + + K+ + + + Sbjct: 712 KEQLDNAKSELEDLKKKISDAYNNRNLKELTKELNKLEQLKEKVESLETLATKVE 766 >gi|134102|sp|P08823|RUBA_WHEAT RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|1345582|emb|CAA30699.1| unnamed protein product [Triticum aestivum] Length = 543 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +SE+ S+ KL E A +S ++ I + + E +D I D Sbjct: 340 DEIQARVAQLKKELSETDSIYDSEKLAERIAKLSGGVAVIKVGATTETELEDRQLRIEDA 399 Query: 70 NS 71 + Sbjct: 400 KN 401 >gi|227522520|ref|ZP_03952569.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus hilgardii ATCC 8290] gi|227090342|gb|EEI25654.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus hilgardii ATCC 8290] Length = 648 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 Q+ +L IE +M++ + K ++ + I KI ++QK + +D Sbjct: 587 ESQLDELSKSKNNIESQMAQPEVFNDLDKASDLQKKLEMIDQKIKETESKWEQKSLQLED 646 Query: 62 LH 63 + Sbjct: 647 IE 648 >gi|294648697|ref|ZP_06726157.1| ABC superfamily ATP binding cassette transporter, ABC protein [Acinetobacter haemolyticus ATCC 19194] gi|292825372|gb|EFF84115.1| ABC superfamily ATP binding cassette transporter, ABC protein [Acinetobacter haemolyticus ATCC 19194] Length = 642 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 8 QICDLKNRFAEIELRMSESPSV-----DAYIKLTEEYAAISPIISKISI-YDQKKQEEQD 61 QI ++ R +IE +++S D IKL E + + + + E ++ Sbjct: 576 QIEKIQPRLVDIEHALADSALYEANRKDDLIKLMNEQSELKNKLEQYEEQLLTFMMELEE 635 Query: 62 LHT 64 L Sbjct: 636 LEA 638 >gi|226952835|ref|ZP_03823299.1| ABC transporter ATP-binding protein [Acinetobacter sp. ATCC 27244] gi|226836456|gb|EEH68839.1| ABC transporter ATP-binding protein [Acinetobacter sp. ATCC 27244] Length = 642 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 8 QICDLKNRFAEIELRMSESPSV-----DAYIKLTEEYAAISPIISKISI-YDQKKQEEQD 61 QI ++ R +IE +++S D IKL E + + + + E ++ Sbjct: 576 QIEKIQPRLVDIEHALADSALYEANRKDDLIKLMNEQSELKNKLEQYEEQLLTFMMELEE 635 Query: 62 LHT 64 L Sbjct: 636 LEA 638 >gi|289580540|ref|YP_003479006.1| Patched family protein [Natrialba magadii ATCC 43099] gi|289530093|gb|ADD04444.1| Patched family protein [Natrialba magadii ATCC 43099] Length = 1131 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 41/114 (35%), Gaps = 12/114 (10%) Query: 4 LSHKQICDLKNRFAEIEL---RMSESPS-----VDAYIKLTEEYAAISPIISKIS-IYDQ 54 ++ +Q DL+ R AE+E + E+ + +D ++ E +S + Y + Sbjct: 142 ITTEQAADLEERGAELEQREGELEETSAQLEAGIDDAREIQREQEQLSATYDEDDPEYQE 201 Query: 55 KKQEEQDLHTVIGDH---NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKD 105 E ++ + + D D E + + +L P++ Sbjct: 202 GVAELENEYDALLDEVTAGLDDEQAEEYEEFADQARFLESQLFQIEQQAENPEE 255 >gi|302419335|ref|XP_003007498.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] gi|261353149|gb|EEY15577.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102] Length = 2491 Score = 38.3 bits (87), Expect = 1.7, Method: Composition-based stats. Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + +Q+ + R E+E + + +A K+++ I+ + + D Sbjct: 2216 IMVLQEQLQAREQRIEELEQNIEKLD-PEAPTKISKR----DDEITWLRELLAVR--HAD 2268 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEIN 98 L +I + + R+ + + ++ ++ E E Sbjct: 2269 LQDIIAALSGEDYNREAVKDAAIRLKANLQMEEQERE 2305 >gi|281599646|gb|ADA72630.1| putative peptide chain release factor H [Shigella flexneri 2002017] gi|313646632|gb|EFS11091.1| putative peptide chain release factor H [Shigella flexneri 2a str. 2457T] gi|332761634|gb|EGJ91914.1| putative peptide chain release factor H [Shigella flexneri 4343-70] gi|332761778|gb|EGJ92057.1| putative peptide chain release factor H [Shigella flexneri 2747-71] gi|332764451|gb|EGJ94684.1| putative peptide chain release factor H [Shigella flexneri K-671] gi|332768583|gb|EGJ98765.1| putative peptide chain release factor H [Shigella flexneri 2930-71] gi|333008731|gb|EGK28195.1| putative peptide chain release factor H [Shigella flexneri K-218] gi|333009717|gb|EGK29167.1| putative peptide chain release factor H [Shigella flexneri VA-6] gi|333010787|gb|EGK30213.1| putative peptide chain release factor H [Shigella flexneri K-272] gi|333021285|gb|EGK40538.1| putative peptide chain release factor H [Shigella flexneri K-227] gi|333022100|gb|EGK41343.1| putative peptide chain release factor H [Shigella flexneri K-304] Length = 131 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 13 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 68 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V SE+SQH N+ A ++ +L Sbjct: 69 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLD 128 Query: 279 DVE 281 + Sbjct: 129 QQQ 131 >gi|298249625|ref|ZP_06973429.1| Class I peptide chain release factor [Ktedonobacter racemifer DSM 44963] gi|297547629|gb|EFH81496.1| Class I peptide chain release factor [Ktedonobacter racemifer DSM 44963] Length = 118 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 1/68 (1%) Query: 211 AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRA 269 ID D D I+ A G GGQH N +S VR+ H P+G +V + +SQ+ NR A Sbjct: 6 YPIDRDSLERDCTIEFFIAGGPGGQHRNKVESGVRLIHRPSGQVVTATERRSQYANREMA 65 Query: 270 MKVLRARL 277 + + ARL Sbjct: 66 FERMAARL 73 >gi|164427433|ref|XP_955770.2| hypothetical protein NCU03483 [Neurospora crassa OR74A] gi|166951800|sp|Q01397|DYNA_NEUCR RecName: Full=Dynactin, 150 kDa isoform; AltName: Full=150 kDa dynein-associated polypeptide; Short=DAP-150; Short=DP-150; AltName: Full=p150-glued gi|157071741|gb|EAA26534.2| conserved hypothetical protein [Neurospora crassa OR74A] Length = 1367 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 5 SHKQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDL 62 +K+I DLK + +E + M + +++ K+ E II + Y ++QE QDL Sbjct: 327 MNKEIEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKYQPQQQEIQDL 386 Query: 63 HTVIGDHNS 71 + + + Sbjct: 387 KRQLKEAEN 395 >gi|315649239|ref|ZP_07902328.1| ABC transporter related protein [Paenibacillus vortex V453] gi|315275227|gb|EFU38596.1| ABC transporter related protein [Paenibacillus vortex V453] Length = 650 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +QI L++ +E+E M+ Y+ L E ++ +Q E + L Sbjct: 594 EEQIHTLESEISELETEMTLPEIYQDYMALQERQQSLEEKK---RQLEQIFAEWESLLE 649 >gi|296816515|ref|XP_002848594.1| conserved hypothetical protein [Arthroderma otae CBS 113480] gi|238839047|gb|EEQ28709.1| conserved hypothetical protein [Arthroderma otae CBS 113480] Length = 2262 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+EL +S DA K+ I+ + + D Sbjct: 1982 IMVLQDQLQQREGRIEELELELSTIDR-DAPAKI----KEKETEINWLRELLSVR--LDD 2034 Query: 62 LHTVI 66 L +I Sbjct: 2035 LKDLI 2039 >gi|271961827|ref|YP_003336023.1| peptide chain release factor-like protein [Streptosporangium roseum DSM 43021] gi|270505002|gb|ACZ83280.1| peptide chain release factor-like protein [Streptosporangium roseum DSM 43021] Length = 219 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 2/121 (1%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 Y+ ++ ISG G + +G Q A +A + Sbjct: 52 YRSVLIQISGAGAEAFAASWTGTLCWQAPSPYRAGTGRKNWYV-IAQPCQVDTPRTTFAE 110 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSS-EKSQHQNRLRAMKVLRARLY 278 D+ I R G GGQH N +AVR TH P+GI+V E+ NR AM++LR R+ Sbjct: 111 ADVDIVACRTGGPGGQHRNKASTAVRATHRPSGIVVVVDTERQFSLNRRIAMRLLRQRIE 170 Query: 279 D 279 D Sbjct: 171 D 171 >gi|310792262|gb|EFQ27789.1| nuclear segregation protein [Glomerella graminicola M1.001] Length = 477 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 1/117 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI-YDQKKQEEQDLH 63 S KQI DLK + EI+ M + + + + A + I ++ Y + Sbjct: 175 SQKQIDDLKAKIKEIKDSMEDPEAKAMSEQYNKIQAELDVIKAEGDEAYKNLSSLRDERS 234 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + N + + E K + E E + + + E + Sbjct: 235 RLHNLQNEKYQAVKTIKDEYWQQRKAAQSYEREAREKARERRKAEQERYQKERKKAD 291 >gi|289614125|emb|CBI61494.1| unnamed protein product [Sordaria macrospora] Length = 1366 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 50/134 (37%), Gaps = 6/134 (4%) Query: 5 SHKQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDL 62 +K+I DLK + +E + M + ++ K+ E II + Y ++QE QDL Sbjct: 330 MNKEIEDLKAKLKVLEKKRMEDREKLNGLEKVKAERDKFERIIQTLQIKYQPQQQEIQDL 389 Query: 63 HTVIGDHN----SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + + + E++ + + E L + D K+ LE+ Sbjct: 390 KRQLKEAETRLYNVEEMQAEHDTAMELATLDREMAEETAEVLKVELDALRQKTEELELEV 449 Query: 119 GTGGSEAALFVGDL 132 E + F + Sbjct: 450 EVLREENSEFTNGM 463 >gi|139437086|ref|ZP_01771246.1| Hypothetical protein COLAER_00223 [Collinsella aerofaciens ATCC 25986] gi|133776733|gb|EBA40553.1| Hypothetical protein COLAER_00223 [Collinsella aerofaciens ATCC 25986] Length = 132 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 34/72 (47%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 207 LPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQN 265 AE+ V+ D + RA+G GGQ VNTTDSAVR+ H PTGI+V +SQ QN Sbjct: 17 YAHYAEMSVEELARDCEVQVFRATGPGGQGVNTTDSAVRMKHGPTGIVVTARESRSQFQN 76 Query: 266 RLRAMKVLRARL 277 R ++ LRA L Sbjct: 77 RSCCLRKLRAEL 88 >gi|71415588|ref|XP_809856.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70874300|gb|EAN88005.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 678 Score = 38.3 bits (87), Expect = 1.8, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 42/184 (22%), Gaps = 1/184 (0%) Query: 114 LEIRAGTGGSEAALF-VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 ++ G+ + L + + D D + + Sbjct: 411 CDMNTKNDGATGCAWSAHGLLTALDFTQKDDALPWMQQNFGDVDVASVLRWARFYHSKDL 470 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 ++ + V + + A + + T A Sbjct: 471 MAKDRPRYLARAVAWIELLSKRSHMMEEAPLTYMRKSKPLSLNTNSNLRVAWQTPVARPD 530 Query: 233 GGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 G + + H VT + + + ++ +V K E A Sbjct: 531 GPPRLLAREEGYTFHHNEHSRFVTETYRHPGETLQSRFLAMQPIHTEVSAKEDFQEIYAQ 590 Query: 293 RKLQ 296 ++ Q Sbjct: 591 QQEQ 594 >gi|209965350|ref|YP_002298265.1| putative ABC transporter ATP-binding protein [Rhodospirillum centenum SW] gi|209958816|gb|ACI99452.1| ABC transporter, ATP-binding protein, putative [Rhodospirillum centenum SW] Length = 559 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYD 53 L +RF E+ M++ + + L E A + I + ++ Sbjct: 100 KALLDRFNEVSNLMADPDA--DFDTLLAEQADLQEKIDAANAWE 141 >gi|118581948|ref|YP_903198.1| class I peptide chain release factor [Pelobacter propionicus DSM 2379] gi|118504658|gb|ABL01141.1| Class I peptide chain release factor [Pelobacter propionicus DSM 2379] Length = 109 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 44/79 (55%), Positives = 55/79 (69%), Gaps = 3/79 (3%) Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 +I EDIRI+ RASG GGQH NTTDSAVRI H+PTGI+ S +SQ +NR RAM+ L Sbjct: 6 EIREEDIRIEYYRASGPGGQHRNTTDSAVRIRHLPTGIVAQASESRSQSRNRERAMERLT 65 Query: 275 ARLYDVERKRMANERSANR 293 A L +R+R+ +R A R Sbjct: 66 AAL--EKRERVVKKRIATR 82 >gi|149912151|ref|ZP_01900736.1| ABC transporter, ATP-binding protein [Moritella sp. PE36] gi|149804772|gb|EDM64816.1| ABC transporter, ATP-binding protein [Moritella sp. PE36] Length = 636 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 5/58 (8%), Positives = 22/58 (37%), Gaps = 2/58 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++ L+ ++ +++ + T+ A + + +K + ++L + Sbjct: 579 KMEQLEELVETLQAEINQPDFFNKPADETK--AMLENLANKEQELETAFARWEELEEM 634 >gi|110224569|emb|CAJ98782.1| peptide release factor protein 2 [Francisella novicida] gi|259236249|gb|ACW20342.1| PrfB [Francisella sp. FnSp1] Length = 101 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 40/108 (37%), Gaps = 10/108 (9%) Query: 25 ESPSVDA---YIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQI 81 + D L ++ + ++ + Q +L + + D + Sbjct: 1 DGSIWDNPEYAQNLGKQKVELENVVHNCEHISETLQTLTELIDLAEE---DESLMQEIAK 57 Query: 82 EVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 + + EI +LE + + D + L+I++G+GG+EA + Sbjct: 58 DTQDVASEIEKLE----FRRMFSGKMDANNAFLDIQSGSGGTEAQDWA 101 >gi|12719433|ref|NP_075504.1| hypothetical protein phiSLTp42 [Staphylococcus phage phiSLT] gi|21283127|ref|NP_646215.1| hypothetical protein MW1398 [Staphylococcus aureus subsp. aureus MW2] gi|49483693|ref|YP_040917.1| hypothetical protein SAR1516 [Staphylococcus aureus subsp. aureus MRSA252] gi|49485841|ref|YP_043062.1| hypothetical protein SAS0935 [Staphylococcus aureus subsp. aureus MSSA476] gi|57651297|ref|YP_185262.1| prophage L54a, major capsid protein, putative [Staphylococcus aureus subsp. aureus COL] gi|66395517|ref|YP_239859.1| ORF009 [Staphylococcus phage 42E] gi|66395666|ref|YP_240005.1| ORF010 [Staphylococcus phage 47] gi|87161729|ref|YP_494098.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88195248|ref|YP_500051.1| hypothetical protein SAOUHSC_01535 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|215401149|ref|YP_002332404.1| major head protein [Staphylococcus phage phiSauS-IPLA35] gi|253315474|ref|ZP_04838687.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|284024508|ref|ZP_06378906.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus subsp. aureus 132] gi|295428017|ref|ZP_06820649.1| hypothetical protein SIAG_00543 [Staphylococcus aureus subsp. aureus EMRSA16] gi|296276331|ref|ZP_06858838.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus subsp. aureus MR1] gi|12697863|dbj|BAB21735.1| unnamed protein product [Staphylococcus phage phiSLT] gi|21204567|dbj|BAB95263.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|49241822|emb|CAG40514.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus MRSA252] gi|49244284|emb|CAG42711.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus MSSA476] gi|57285483|gb|AAW37577.1| prophage L54a, major capsid protein, putative [Staphylococcus aureus subsp. aureus COL] gi|62636010|gb|AAX91121.1| ORF009 [Staphylococcus phage 42E] gi|62636090|gb|AAX91201.1| ORF010 [Staphylococcus phage 47] gi|87127703|gb|ABD22217.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87202806|gb|ABD30616.1| conserved hypothetical phage protein [Staphylococcus aureus subsp. aureus NCTC 8325] gi|215260500|gb|ACJ64630.1| gp41 [Staphylococcus phage phiSauS-IPLA35] gi|295128375|gb|EFG58009.1| hypothetical protein SIAG_00543 [Staphylococcus aureus subsp. aureus EMRSA16] gi|315128435|gb|EFT84443.1| hypothetical protein CGSSa03_13332 [Staphylococcus aureus subsp. aureus CGS03] gi|315197737|gb|EFU28071.1| hypothetical protein CGSSa01_10798 [Staphylococcus aureus subsp. aureus CGS01] gi|329729407|gb|EGG65812.1| phage capsid family [Staphylococcus aureus subsp. aureus 21189] gi|329730628|gb|EGG67013.1| phage capsid family [Staphylococcus aureus subsp. aureus 21193] Length = 387 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K +++ Sbjct: 16 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKG 75 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 76 EAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 135 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 136 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTT 195 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 196 NKFKVFAAISDTVIHGSDVDLVNWVE 221 >gi|157150085|ref|YP_001450407.1| ABC transporter ATP-binding protein SP1553 [Streptococcus gordonii str. Challis substr. CH1] gi|157074879|gb|ABV09562.1| ABC transporter, ATP-binding protein SP1553 [Streptococcus gordonii str. Challis substr. CH1] Length = 621 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 6/52 (11%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE+ M E+ + +L++ + ++ K Y+ Sbjct: 566 EDDIEALEERISEIEVAMQENG--SDFARLSQLQKELDEQNEKLLEKYERYE 615 >gi|148553165|ref|YP_001260747.1| putative ABC transporter ATP-binding protein [Sphingomonas wittichii RW1] gi|148498355|gb|ABQ66609.1| ABC transporter related [Sphingomonas wittichii RW1] Length = 559 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 1/64 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + D+ +RF I M + + L EE + I + + + + Sbjct: 99 VADMIDRFNAISAEMGDPKDDTDFDALMEEMGVLQEKIDAADGW-TLDNQLEIAMEALRC 157 Query: 69 HNSD 72 D Sbjct: 158 PPGD 161 >gi|325846946|ref|ZP_08169803.1| ABC transporter, ATP-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481188|gb|EGC84232.1| ABC transporter, ATP-binding protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 566 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + L+ ++E++MSE + D ++ +EYA S K Y K E + + + Sbjct: 92 KDLISLEKNIRDLEVKMSEEKNPDKLDEIMKEYAKKSEEFEKKQGY-SYKSEIRGVLIGM 150 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 G D + E+ L + L+L + + Sbjct: 151 GFEEEDFQKEVSLLSGGQKARVELACLLLQKPDLILLDEPTNHLDIKA 198 >gi|124516485|gb|EAY57993.1| putative helicase [Leptospirillum rubarum] Length = 1054 Score = 38.3 bits (87), Expect = 1.9, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 4/71 (5%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + +L+ RF E + M+ D T E + I + + Sbjct: 812 MAMAGDDAVEELEGRFPERQFLMAHYALWDE----TPEKMGLERISETVQRLRKNPVLCD 867 Query: 61 DLHTVIGDHNS 71 +L ++ Sbjct: 868 ELEEMLELAKD 878 >gi|29566685|ref|NP_818251.1| gp200 [Mycobacterium phage Bxz1] gi|109393384|ref|YP_656182.1| gp202 [Mycobacterium phage Catera] gi|29425410|gb|AAN16834.1| gp200 [Mycobacterium phage Bxz1] gi|91981206|gb|ABE67921.1| gp202 [Mycobacterium phage Catera] Length = 113 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYD 279 D ++T R G+GGQ+ NT D+AVRI H P+G + + E+SQ QN+ A + + Sbjct: 8 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAESSKF 67 Query: 280 VERKRMANERSANRKLQI 297 + K Q+ Sbjct: 68 QLWLKRQVANDDLIKAQV 85 >gi|281416112|ref|YP_003347848.1| gp198 [Mycobacterium phage ET08] gi|255927791|gb|ACU41412.1| gp198 [Mycobacterium phage ET08] gi|255928079|gb|ACU41698.1| gp203 [Mycobacterium phage LRRHood] Length = 136 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYD 279 D ++T R G+GGQ+ NT D+AVRI H P+G + + E+SQ QN+ A + + Sbjct: 31 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAESSKF 90 Query: 280 VERKRMANERSANRKLQI 297 + K Q+ Sbjct: 91 QLWLKRQVANDDLIKAQV 108 >gi|239621586|ref|ZP_04664617.1| ATP binding protein of ABC transporter [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515461|gb|EEQ55328.1| ATP binding protein of ABC transporter [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 552 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 89 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 145 Query: 69 HNSDS 73 + D+ Sbjct: 146 PDPDT 150 >gi|57640713|ref|YP_183191.1| hypothetical protein TK0778 [Thermococcus kodakarensis KOD1] gi|57159037|dbj|BAD84967.1| hypothetical protein, conserved, containing Toprim domain [Thermococcus kodakarensis KOD1] Length = 303 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISK-ISIYDQKKQEEQD 61 KQ+ D+K ++ E+ + Y L +E+ + + S Y + E + Sbjct: 128 MELRKQLLDIKGKYDEL---------ANEYEALYKEHEELQKKYDELYSEYKRLASENEG 178 Query: 62 LHTVIG 67 L ++ Sbjct: 179 LKELLE 184 >gi|210634150|ref|ZP_03298012.1| hypothetical protein COLSTE_01933 [Collinsella stercoris DSM 13279] gi|210158897|gb|EEA89868.1| hypothetical protein COLSTE_01933 [Collinsella stercoris DSM 13279] Length = 126 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%) Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 + + RASG GGQ VNTTDSAVR+ H+P+GI+V +SQ QNR ++ L+A L Sbjct: 24 RECEVQVFRASGPGGQGVNTTDSAVRMRHVPSGIVVTARESRSQFQNRASCLRKLKAELE 83 Query: 279 DVER 282 R Sbjct: 84 RRAR 87 >gi|24111726|ref|NP_706236.1| peptide chain release factor 2 [Shigella flexneri 2a str. 301] gi|30061853|ref|NP_836024.1| peptide chain release factor 2 [Shigella flexneri 2a str. 2457T] gi|24050507|gb|AAN41943.1| probable peptide chain release factor [Shigella flexneri 2a str. 301] gi|30040097|gb|AAP15830.1| probable peptide chain release factor [Shigella flexneri 2a str. 2457T] Length = 151 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 55/123 (44%), Gaps = 5/123 (4%) Query: 160 YKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPL 219 + + ++ G ++ + G + + D Sbjct: 33 LRSALISLDGDNAWALSESWCGTIQWICPSPYRPHHGRKNWFLGI----GRFTADEQEQS 88 Query: 220 EDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLY 278 + IR +T+R+SG GGQHVN TDSAVR TH+ +GI V SE+SQH N+ A ++ +L Sbjct: 89 DAIRYETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLD 148 Query: 279 DVE 281 + Sbjct: 149 QQQ 151 >gi|148267496|ref|YP_001246439.1| phage major capsid protein, HK97 [Staphylococcus aureus subsp. aureus JH9] gi|150393550|ref|YP_001316225.1| phage major capsid protein HK97 [Staphylococcus aureus subsp. aureus JH1] gi|147740565|gb|ABQ48863.1| phage major capsid protein, HK97 [Staphylococcus aureus subsp. aureus JH9] gi|149946002|gb|ABR51938.1| phage major capsid protein HK97 [Staphylococcus aureus subsp. aureus JH1] Length = 387 Score = 38.3 bits (87), Expect = 2.0, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K +++ Sbjct: 16 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKG 75 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 76 EAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 135 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 136 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTT 195 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 196 NKFKVFAAISDTVIHGSDVDLVNWVE 221 >gi|213691460|ref|YP_002322046.1| ABC transporter related [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522921|gb|ACJ51668.1| ABC transporter related [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320457532|dbj|BAJ68153.1| ABC transporter ATP-binding component [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 559 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|203460691|ref|YP_002224425.1| gp204 [Mycobacterium phage Spud] gi|197312272|gb|ACH62628.1| gp204 [Mycobacterium phage Spud] Length = 113 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRARLYD 279 D ++T R G+GGQ+ NT D+AVRI H P+G + + E+SQ QN+ A + + Sbjct: 8 DCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAESSKF 67 Query: 280 VERKRMANERSANRKLQI 297 + K Q+ Sbjct: 68 QLWLKRQVANDDLIKAQV 85 >gi|289643618|ref|ZP_06475732.1| ABC transporter related protein [Frankia symbiont of Datisca glomerata] gi|289506567|gb|EFD27552.1| ABC transporter related protein [Frankia symbiont of Datisca glomerata] Length = 560 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + R+ EI +M+ + + L E AA+ I + ++ + + Sbjct: 96 IRAVLARYEEINEKMAAPDA--DFDSLLAEQAALIDRIEAANAWE-LDSQLDQAMDALRL 152 Query: 69 HNSDSE 74 D++ Sbjct: 153 PPGDAD 158 >gi|242059479|ref|XP_002458885.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] gi|241930860|gb|EES04005.1| hypothetical protein SORBIDRAFT_03g042170 [Sorghum bicolor] Length = 259 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 28/72 (38%), Positives = 43/72 (59%), Gaps = 1/72 (1%) Query: 213 IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMK 271 + + +E + T +ASG GGQH N +SAVR+ H+PTGI+ ++SQH+NR A+ Sbjct: 90 MSDEELMEQCDMGTFKASGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHKNRASALS 149 Query: 272 VLRARLYDVERK 283 LR + R+ Sbjct: 150 RLRTLIALKVRR 161 >gi|317494361|ref|ZP_07952775.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917611|gb|EFV38956.1| ABC transporter [Enterobacteriaceae bacterium 9_2_54FAA] Length = 642 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 31/81 (38%), Gaps = 15/81 (18%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ- 60 + +Q+ L + A +E ++S+S D K A ++ + + + +E + Sbjct: 567 IMKMEQQMEKLSAQLATLEEKLSDSDLYDISRK-----AELTECLQQQNQTKAALEEAEM 621 Query: 61 ---------DLHTVIGDHNSD 72 + T+ + +D Sbjct: 622 EWLDGQEKLEAMTLAFEAEND 642 >gi|317482109|ref|ZP_07941133.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA] gi|316916468|gb|EFV37866.1| ABC transporter [Bifidobacterium sp. 12_1_47BFAA] Length = 559 Score = 38.3 bits (87), Expect = 2.1, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|328780007|ref|XP_001120388.2| PREDICTED: major antigen [Apis mellifera] Length = 2026 Score = 38.3 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 45/114 (39%), Gaps = 3/114 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQE-EQDLHT 64 K++ +L+ + +E+E + ++ +L +E + +I K ++ ++ Sbjct: 432 EKKLSELEKKRSELEKELEDNRG--ELERLQKENLDLKDVIEVERAEKDKLRDLLEESKK 489 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + D+ + + + E + + + LE+ L ++ LE R Sbjct: 490 LKEDNENLWAQLERLRGENDDLMGQKKALEDLNKQLNEDNESMKRTMGNLEARI 543 >gi|170094760|ref|XP_001878601.1| predicted protein [Laccaria bicolor S238N-H82] gi|164647055|gb|EDR11300.1| predicted protein [Laccaria bicolor S238N-H82] Length = 294 Score = 38.3 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 ++ ED+ +R SG GGQ +N T++ V++ H PTG+ V +S NR Sbjct: 178 HLQRSIPELREEDLEETFVRGSGPGGQSINKTENNVQLLHKPTGLRVSCQDTRSLSLNRK 237 Query: 268 RAMKVLRARL 277 A + L +L Sbjct: 238 LARRWLLEKL 247 >gi|157164849|ref|YP_001466631.1| peptidase T (tripeptide aminopeptidase; aminotripeptidase; tripeptidase) [Campylobacter concisus 13826] gi|112800753|gb|EAT98097.1| ABC transporter ATP-binding protein uup [Campylobacter concisus 13826] Length = 643 Score = 38.3 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 7 KQICDLKNRFAEIELRMSESPSVDA------YIKLTEEYAAISPIISKISIYDQKKQEEQ 60 +I L+ R AE+ +S+ Y +L + A + + + + +E + Sbjct: 584 DKISTLEARVAELNEGLSDPKIYQEVGLTKLYEELEKAKAELESLENDYFEVLEIAEELE 643 >gi|1050297|gb|AAA80458.1| product p150Glued [Neurospora crassa] Length = 1300 Score = 38.3 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 5 SHKQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDL 62 +K+I DLK + +E + M + +++ K+ E II + Y ++QE QDL Sbjct: 260 MNKEIEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKYQPQQQEIQDL 319 Query: 63 HTVIGDHNS 71 + + + Sbjct: 320 KRQLKEAEN 328 >gi|18376073|emb|CAD21101.1| DYNACTIN (150 KDA DYNEIN-ASSOCIATED POLYPEPTIDE) ro-3 [Neurospora crassa] Length = 1300 Score = 38.3 bits (87), Expect = 2.2, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Query: 5 SHKQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDL 62 +K+I DLK + +E + M + +++ K+ E II + Y ++QE QDL Sbjct: 260 MNKEIEDLKAKLKVLEKKRMEDREKLNSLEKVKAERDKFERIIQTLQIKYQPQQQEIQDL 319 Query: 63 HTVIGDHNS 71 + + + Sbjct: 320 KRQLKEAEN 328 >gi|227546584|ref|ZP_03976633.1| ABC superfamily ATP binding cassette transporter ABC protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322689823|ref|YP_004209557.1| ABC transporter ATP-binding protein [Bifidobacterium longum subsp. infantis 157F] gi|322691762|ref|YP_004221332.1| ABC transporter ATP-binding protein [Bifidobacterium longum subsp. longum JCM 1217] gi|227212901|gb|EEI80780.1| ABC superfamily ATP binding cassette transporter ABC protein [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320456618|dbj|BAJ67240.1| ABC transporter ATP-binding component [Bifidobacterium longum subsp. longum JCM 1217] gi|320461159|dbj|BAJ71779.1| ABC transporter ATP-binding component [Bifidobacterium longum subsp. infantis 157F] Length = 559 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|204305830|ref|YP_002224647.1| gp203 [Mycobacterium phage Cali] gi|197312803|gb|ACH63156.1| gp203 [Mycobacterium phage Cali] Length = 110 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 1/82 (1%) Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIM-VTSSEKSQHQNRLRAMKVLRA 275 + L D ++T R G+GGQ+ NT D+AVRI H P+G + + E+SQ QN+ A + + Sbjct: 1 MTLADCVVETKRGHGNGGQNRNTRDTAVRIVHPPSGAVGESQEERSQLQNKKTAFRRMAE 60 Query: 276 RLYDVERKRMANERSANRKLQI 297 + K Q+ Sbjct: 61 SSKFQLWLKRQVANDDLIKAQV 82 >gi|46190488|ref|ZP_00121452.2| COG0488: ATPase components of ABC transporters with duplicated ATPase domains [Bifidobacterium longum DJO10A] Length = 552 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 89 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 145 Query: 69 HNSDS 73 + D+ Sbjct: 146 PDPDT 150 >gi|295692258|ref|YP_003600868.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1] gi|295030364|emb|CBL49843.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus ST1] Length = 640 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] gi|300073507|gb|ADJ62906.1| ABC-type transport system, with duplicated ATPase domains, protein [Herbaspirillum seropedicae SmR1] Length = 640 Score = 37.9 bits (86), Expect = 2.2, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 5/55 (9%) Query: 7 KQICDLKNRFAEIELRMSESPSV----DAYIKLTEEYAAI-SPIISKISIYDQKK 56 K+I L+ E+ ++++ D +KL + +A I ++ + +++ + Sbjct: 583 KRIAALEAEQKELSAKLADPDLYKKGADEAVKLNQRFAEIDEELLVSLERWEEIE 637 >gi|29028650|ref|NP_803339.1| SLT orf 37-like protein [Staphylococcus phage phi 12] gi|161509679|ref|YP_001575338.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|209363590|ref|YP_002268008.1| putative capsid protein [Staphylococcus phage phi2958PVL] gi|257432455|ref|ZP_05608818.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus E1410] gi|258420297|ref|ZP_05683244.1| bacteriophage capsid protein [Staphylococcus aureus A9719] gi|258448836|ref|ZP_05696946.1| bacteriophage capsid protein [Staphylococcus aureus A6224] gi|282919222|ref|ZP_06326957.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus C427] gi|294848477|ref|ZP_06789223.1| phage major capsid protein [Staphylococcus aureus A9754] gi|295407558|ref|ZP_06817351.1| bacteriophage capsid protein [Staphylococcus aureus A8819] gi|297207830|ref|ZP_06924264.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297246588|ref|ZP_06930421.1| bacteriophage capsid protein [Staphylococcus aureus A8796] gi|297591012|ref|ZP_06949650.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus MN8] gi|300911916|ref|ZP_07129359.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus TCH70] gi|18920574|gb|AAL82314.1| SLT orf 37-like protein [Staphylococcus phage phi 12] gi|160368488|gb|ABX29459.1| possible bacteriophage capsid protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|208973091|dbj|BAG74407.1| putative capsid protein [Staphylococcus phage phi2958PVL] gi|257283334|gb|EEV13466.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus E1410] gi|257843722|gb|EEV68124.1| bacteriophage capsid protein [Staphylococcus aureus A9719] gi|257857873|gb|EEV80764.1| bacteriophage capsid protein [Staphylococcus aureus A6224] gi|282317032|gb|EFB47406.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus C427] gi|294824503|gb|EFG40926.1| phage major capsid protein [Staphylococcus aureus A9754] gi|294967577|gb|EFG43613.1| bacteriophage capsid protein [Staphylococcus aureus A8819] gi|296887546|gb|EFH26445.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297176546|gb|EFH35811.1| bacteriophage capsid protein [Staphylococcus aureus A8796] gi|297575898|gb|EFH94614.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus MN8] gi|300886162|gb|EFK81364.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus TCH70] gi|302333118|gb|ADL23311.1| putative phage capsid protein [Staphylococcus aureus subsp. aureus JKD6159] gi|320140400|gb|EFW32255.1| phage capsid family protein [Staphylococcus aureus subsp. aureus MRSA131] gi|320142756|gb|EFW34559.1| phage capsid family protein [Staphylococcus aureus subsp. aureus MRSA177] Length = 402 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K +++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 91 EAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|313124274|ref|YP_004034533.1| ATPase component of ABC transporter with duplicated ATPase domains [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280837|gb|ADQ61556.1| ATPase component of ABC transporter with duplicated ATPase domains [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 630 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L+ + EI+ M++ + KL ++ + KIS Q ++ Sbjct: 570 EKDLEELEAKEQEIQEAMADPAIAADFSKLGPLQEELTAVQEKISQVSQAWEDASLALE 628 >gi|189440717|ref|YP_001955798.1| putative ABC transporter ATP-binding protein [Bifidobacterium longum DJO10A] gi|189429152|gb|ACD99300.1| ATPase component of ABC transporter [Bifidobacterium longum DJO10A] Length = 559 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|66395599|ref|YP_239938.1| ORF011 [Staphylococcus phage 3A] gi|62635945|gb|AAX91056.1| ORF011 [Staphylococcus phage 3A] Length = 387 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 16 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVKDIEEKEKAKVKDTG 75 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 76 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 135 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 136 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 195 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 196 NKFKVFAAISDTVIHGSDVDLVNWVE 221 >gi|19553971|ref|NP_601973.1| ATPase with chaperone activity, ATP-binding subunit [Corynebacterium glutamicum ATCC 13032] gi|62391615|ref|YP_227017.1| ATP-dependent protease [Corynebacterium glutamicum ATCC 13032] gi|1705922|sp|P53532|CLPB_CORGL RecName: Full=Chaperone protein ClpB gi|1163118|gb|AAB49540.1| heat-inducible expression; two ATP-binding domains; ClpB homolog, similar to E. coli ClpB protein, Swiss-Prot Accession Number P03815 [Corynebacterium glutamicum] gi|21325552|dbj|BAC00174.1| ATPases with chaperone activity, ATP-binding subunit [Corynebacterium glutamicum ATCC 13032] gi|41326957|emb|CAF20801.1| PROBABLE ATP-DEPENDENT PROTEASE (HEAT SHOCK PROTEIN) [Corynebacterium glutamicum ATCC 13032] Length = 852 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQDL 62 ++ + R E+ +S+ + +L + + ++ K+S + +K D+ Sbjct: 415 DELERIVRRLEIEEMALSKESDAASKERLEKLRSELADEREKLSELKARWQNEKTAIDDV 474 Query: 63 HTVIGD------HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + + + +E I ELE +I + +++ E+ Sbjct: 475 REMKEELEALRSESDIAERDGNYGRVAELRYGRIPELEKQIEDAESKVEVNENAMLTEEV 534 Query: 117 RAGTGGSEAALFVGD 131 T + + G Sbjct: 535 TPDTIADVVSAWTGI 549 >gi|293379973|ref|ZP_06626074.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus 214-1] gi|290923486|gb|EFE00388.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus 214-1] Length = 640 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|283780196|ref|YP_003370951.1| ABC transporter [Pirellula staleyi DSM 6068] gi|283438649|gb|ADB17091.1| ABC transporter related protein [Pirellula staleyi DSM 6068] Length = 558 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 14 NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDS 73 +R+ EI ++E D KL +E A + I ++ +E + + D+ Sbjct: 103 DRYNEISTLLAEPMDDDQMQKLCDEMARLQDQIEATGAWE-MDRELEIAMDAMNLPEKDA 161 Query: 74 E 74 + Sbjct: 162 D 162 >gi|291516353|emb|CBK69969.1| ATPase components of ABC transporters with duplicated ATPase domains [Bifidobacterium longum subsp. longum F8] Length = 559 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|254283112|ref|ZP_04958080.1| ABC transporter, ATP-binding protein [gamma proteobacterium NOR51-B] gi|219679315|gb|EED35664.1| ABC transporter, ATP-binding protein [gamma proteobacterium NOR51-B] Length = 633 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTE-EYAAISPIISKISIYDQKKQEEQ 60 +I L+ + A++E + S+ + A ++ + + ++ E Sbjct: 575 DKIEQLEAQQADLESKTSDPAFYQQPQDAVKATLAELNSVNELLDETLERWTELD 629 >gi|23466236|ref|NP_696839.1| putative ABC transporter ATP-binding protein [Bifidobacterium longum NCC2705] gi|23326982|gb|AAN25475.1| ATP binding protein of ABC transporter [Bifidobacterium longum NCC2705] Length = 559 Score = 37.9 bits (86), Expect = 2.3, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF EI M+ + + L EE + I +D + + + Sbjct: 96 IAEKVARFNEIGEEMANPDA--DFDALMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|294673355|ref|YP_003573971.1| ABC transporter ATP-binding protein [Prevotella ruminicola 23] gi|294473067|gb|ADE82456.1| ABC transporter, ATP-binding protein [Prevotella ruminicola 23] Length = 662 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 10/56 (17%), Positives = 26/56 (46%), Gaps = 2/56 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDL 62 +I L+ R E++ + + + +T EY I + ++ +++ +E + L Sbjct: 606 KIEQLEQRLKELDELLMQPENASDMTMVT-EYTGIKRDLDEEVERWEKASEELESL 660 >gi|297734943|emb|CBI17177.3| unnamed protein product [Vitis vinifera] Length = 553 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+I+ ++E+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DEIQARIAQIKKELAETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|256086973|ref|XP_002579656.1| myosin heavy chain [Schistosoma mansoni] gi|238665124|emb|CAZ35895.1| myosin heavy chain, putative [Schistosoma mansoni] Length = 1193 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 D++ R E+E R+++ D LTE +S + ++ K++ +DL + + Sbjct: 891 DMEQRIKELEERLADEE--DQAANLTEVKKKMS------AEIEELKKDVEDLESSLQKAE 942 Query: 71 SDSEIRDLAQIEVLAIEKEIREL 93 + + +D + + + E+ Sbjct: 943 QEKQTKDNQIRTLQSEMAQQDEM 965 >gi|225436538|ref|XP_002277357.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 585 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+I+ ++E+ SV KL E A +S ++ I + + E +D I D Sbjct: 383 DEIQARIAQIKKELAETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 442 Query: 70 NS 71 + Sbjct: 443 KN 444 >gi|327349384|gb|EGE78241.1| myosin class II heavy chain [Ajellomyces dermatitidis ATCC 18188] Length = 2585 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I+ + + D Sbjct: 2262 IMVLQDQLQQREGRIEELEQDLAAID--KDAPAKVKER---ETEINWLRELLGVR--LDD 2314 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2315 LQDIINTLSQPSFNQQAVRDAAIRLKANLQMEQQEKERAMSGGNGNGSQQF 2365 >gi|261203535|ref|XP_002628981.1| myosin class II heavy chain [Ajellomyces dermatitidis SLH14081] gi|239586766|gb|EEQ69409.1| myosin class II heavy chain [Ajellomyces dermatitidis SLH14081] Length = 2520 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I+ + + D Sbjct: 2197 IMVLQDQLQQREGRIEELEQDLAAID--KDAPAKVKER---ETEINWLRELLGVR--LDD 2249 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2250 LQDIINTLSQPSFNQQAVRDAAIRLKANLQMEQQEKERAMSGGNGNGSQQF 2300 >gi|282927350|ref|ZP_06334968.1| phage major capsid protein [Staphylococcus aureus A10102] gi|282590674|gb|EFB95750.1| phage major capsid protein [Staphylococcus aureus A10102] Length = 402 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 67/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K +++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDKG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 91 EAYQSLSDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|145296772|ref|YP_001139593.1| hypothetical protein cgR_2676 [Corynebacterium glutamicum R] gi|140846692|dbj|BAF55691.1| hypothetical protein [Corynebacterium glutamicum R] Length = 852 Score = 37.9 bits (86), Expect = 2.4, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 45/135 (33%), Gaps = 10/135 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQDL 62 ++ + R E+ +S+ + +L + + ++ K+S + +K D+ Sbjct: 415 DELERIVRRLEIEEMALSKESDAASKERLEKLRSELADEREKLSELKARWQNEKTAIDDV 474 Query: 63 HTVIGD------HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 + + + +E I ELE +I + +++ E+ Sbjct: 475 REMKEELEALRSESDIAERDGNYGRVAELRYGRIPELEKQIEDAESKVEVNENAMLTEEV 534 Query: 117 RAGTGGSEAALFVGD 131 T + + G Sbjct: 535 TPDTIADVVSAWTGI 549 >gi|313679621|ref|YP_004057360.1| ABC transporter [Oceanithermus profundus DSM 14977] gi|313152336|gb|ADR36187.1| ABC transporter related protein [Oceanithermus profundus DSM 14977] Length = 622 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 9 ICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQ 60 I DL R + R ++ D Y + E A + ++ +++ +E + Sbjct: 567 IEDLHARLEALHARAAKPGLGPDDYAAIAREEAELKEALAAREAEWERAVEELE 620 >gi|239608200|gb|EEQ85187.1| myosin class II heavy chain [Ajellomyces dermatitidis ER-3] Length = 2544 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 11/111 (9%), Positives = 36/111 (32%), Gaps = 7/111 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E ++ +E I+ + + D Sbjct: 2221 IMVLQDQLQQREGRIEELEQDLAAID--KDAPAKVKER---ETEINWLRELLGVR--LDD 2273 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 L +I + S + + + ++ ++ + E + + + + Sbjct: 2274 LQDIINTLSQPSFNQQAVRDAAIRLKANLQMEQQEKERAMSGGNGNGSQQF 2324 >gi|256844539|ref|ZP_05550025.1| ABC transporter [Lactobacillus crispatus 125-2-CHN] gi|256613617|gb|EEU18820.1| ABC transporter [Lactobacillus crispatus 125-2-CHN] Length = 640 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|108756949|ref|YP_630627.1| ABC transporter ATP-binding protein [Myxococcus xanthus DK 1622] gi|108460829|gb|ABF86014.1| ABC transporter, ATP-binding protein [Myxococcus xanthus DK 1622] Length = 642 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 25/58 (43%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 I ++R A +E ++++ K+ E + ++++ + QE QDL Sbjct: 580 MEATIEAAESRKAGLEAQLADPAVYSNGPKVAEVQKELDAAVAEVDRLYTRWQELQDL 637 >gi|312977902|ref|ZP_07789648.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus CTV-05] gi|310895209|gb|EFQ44277.1| ABC transporter, ATP-binding protein [Lactobacillus crispatus CTV-05] Length = 640 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|262047554|ref|ZP_06020509.1| ABC transporter [Lactobacillus crispatus MV-3A-US] gi|260572130|gb|EEX28695.1| ABC transporter [Lactobacillus crispatus MV-3A-US] Length = 640 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|242032147|ref|XP_002463468.1| hypothetical protein SORBIDRAFT_01g000380 [Sorghum bicolor] gi|241917322|gb|EER90466.1| hypothetical protein SORBIDRAFT_01g000380 [Sorghum bicolor] Length = 580 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D++ R A+++ +S++ S KL E A +S ++ I + + E +D I D Sbjct: 383 DDIQARIAQLKRELSQTDSAYDSEKLAERIAKLSGGVAVIKVGASTEAELEDRKLRIEDA 442 Query: 70 NS 71 + Sbjct: 443 KN 444 >gi|227877619|ref|ZP_03995672.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus crispatus JV-V01] gi|256849072|ref|ZP_05554505.1| ABC transporter [Lactobacillus crispatus MV-1A-US] gi|227862767|gb|EEJ70233.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus crispatus JV-V01] gi|256713848|gb|EEU28836.1| ABC transporter [Lactobacillus crispatus MV-1A-US] Length = 640 Score = 37.9 bits (86), Expect = 2.5, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 26/62 (41%), Gaps = 4/62 (6%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQD 61 KQI L+ R EI+ M+ ++ KL +S + K+ +++ +E + Sbjct: 579 EKQIEQLEEREQEIQTEMANPEIASSFDKLGPLQEQLSDVQQKLDEANSAWEKAIEEMDN 638 Query: 62 LH 63 Sbjct: 639 FE 640 >gi|297736949|emb|CBI26150.3| unnamed protein product [Vitis vinifera] Length = 1648 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 15/83 (18%) Query: 3 FLSHKQ----ICDLKNRFAEIELRMSESPSVDA------YIKLTEEYAAISPI---ISKI 49 ++ + I L R E++ ++ E +L ++ A + + ++ Sbjct: 380 WVPQDKKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLGKDKAELKTLRQEKEEV 439 Query: 50 SIYDQKKQEEQD--LHTVIGDHN 70 ++KQ +D + N Sbjct: 440 ERLKKEKQTLEDNTAKKLSEMEN 462 >gi|125717917|ref|YP_001035050.1| antibiotic ABC transporter ATPase [Streptococcus sanguinis SK36] gi|125497834|gb|ABN44500.1| ABC-type transporter (antibiotic resistance protein), ATPase component, putative [Streptococcus sanguinis SK36] Length = 622 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 6/52 (11%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L+E + ++ K Y+ Sbjct: 566 EDDIEALEERISEIEAAMQENG--SDFARLSELQQELDKQNEKLLEKYERYE 615 >gi|323439019|gb|EGA96752.1| phiSLT ORF387-like protein, putative phage capsid protein [Staphylococcus aureus O11] Length = 402 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVKDIEEKEKAKVKDTG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 91 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKAKGDTVKFAT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|269123085|ref|YP_003305662.1| YadA domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314411|gb|ACZ00785.1| YadA domain protein [Streptobacillus moniliformis DSM 12112] Length = 2075 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 25/61 (40%), Gaps = 2/61 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRM-SESPSVDAYI-KLTEEYAAISPIISKISIYDQKKQE 58 ++ S ++ + + E ++ +++ ++ L++E + IS I + + Sbjct: 1905 IIDNSLDELDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKISVIEKIKMNEDD 1964 Query: 59 E 59 Sbjct: 1965 L 1965 >gi|261344411|ref|ZP_05972055.1| ABC transporter, ATP-binding protein [Providencia rustigianii DSM 4541] gi|282567314|gb|EFB72849.1| ABC transporter, ATP-binding protein [Providencia rustigianii DSM 4541] Length = 644 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 6 HKQICDLKNR-------FAEIELRMSESPSVDAYIKLTEEYAA-ISPIISKISIYDQKKQ 57 K+I +L+ + E+E ++S+ + K E + + S + + Sbjct: 568 RKKITELEKKMEKYSTSLNELEAKLSDPAIYEQDKKA--ELTDCLKKQTEQKSALEDVEM 625 Query: 58 EEQDLHTVIGDHNSDSE 74 E DL + S+ E Sbjct: 626 EWMDLQEQLETMTSEFE 642 >gi|253700800|ref|YP_003021989.1| class I peptide chain release factor [Geobacter sp. M21] gi|251775650|gb|ACT18231.1| Class I peptide chain release factor [Geobacter sp. M21] Length = 105 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I DI+++ RASG GGQH NTTDSAVRI H+PTG++ S +SQ +NR +AM+ L Sbjct: 1 MEIRDVDIKVEFYRASGPGGQHRNTTDSAVRIRHLPTGVVAQASESRSQFENREKAMERL 60 Query: 274 RARLYDVERK 283 L E+K Sbjct: 61 AELLRRREQK 70 >gi|153001634|ref|YP_001367315.1| valyl-tRNA synthetase [Shewanella baltica OS185] gi|151366252|gb|ABS09252.1| valyl-tRNA synthetase [Shewanella baltica OS185] Length = 958 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLH 63 KQ+ L+ A IE ++S V + +E A ++ + + +++K E L Sbjct: 898 DKQLEKLRQEIARIEGKLSNQGFVAKAPAEVIDKERAKMTDLKRDMDKLNEQKSEFAKLE 957 Query: 64 T 64 Sbjct: 958 A 958 >gi|42520334|ref|NP_966249.1| AAA family ATPase [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410072|gb|AAS14183.1| ATPase, AAA family [Wolbachia endosymbiont of Drosophila melanogaster] Length = 404 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 4/74 (5%) Query: 8 QICDLKNR----FAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 QI +L R + EIE ++ + + KL E + I+ ++ ++ + ++ Sbjct: 102 QIKELNKRLSSQYNEIEKLIASAAKKEELNKLNNEVKELKVKIASVATKEEINKLSNEVE 161 Query: 64 TVIGDHNSDSEIRD 77 +IG + E+ + Sbjct: 162 KLIGSAATKDEMEE 175 >gi|322706718|gb|EFY98298.1| nuclear segregation protein (Bfr1), putative [Metarhizium anisopliae ARSEF 23] Length = 478 Score = 37.9 bits (86), Expect = 2.6, Method: Composition-based stats. Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 1/117 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPII-SKISIYDQKKQEEQDLH 63 S KQI DL+ + EI+ M + + + A + I + Y + Sbjct: 176 SQKQIDDLRAKIKEIKDSMEDPEQKALSEQYNKIQAELDTIKAEQDEAYKGISSLRDERS 235 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + E +K + E E + + + E Sbjct: 236 KLQAEQQEKYTAIRKLKDEYYGQKKAFQAFEREAREKAKARREAEKEQWKKETLKKE 292 >gi|322385625|ref|ZP_08059269.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus cristatus ATCC 51100] gi|321270363|gb|EFX53279.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus cristatus ATCC 51100] Length = 621 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYDQKKQEEQ 60 I +L+ R A IE+ M ++ + KL++ + ++ K Y+ E + Sbjct: 568 DIEELEARIAAIEIEMEQNG--SDFTKLSKLQKELDDKNEQLLEKYERYE-YLSELE 621 >gi|317047591|ref|YP_004115239.1| ABC transporter-like protein [Pantoea sp. At-9b] gi|316949208|gb|ADU68683.1| ABC transporter related protein [Pantoea sp. At-9b] Length = 637 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ L++R E++ +MS + + + + + ++L + Sbjct: 577 QKLEQLESRIGELQAQMSHPDFFSQPHD--KTQPVLDALAQTEQELETAFERWEELEAL 633 >gi|169826475|ref|YP_001696633.1| putative ATP-dependent helicase [Lysinibacillus sphaericus C3-41] gi|168990963|gb|ACA38503.1| Putative ATP-dependent helicase [Lysinibacillus sphaericus C3-41] Length = 1268 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 17/114 (14%), Positives = 43/114 (37%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 KQ+ ++ ++E +++ PS++ +E + + + Y + +++Q L Sbjct: 502 EKQLAQIEPIIQQLEQTLADHPSIEDLQLTIQETSQKVEQLEAATQYKELLEQKQQLAVQ 561 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D EI + I + +K + L + + S +L + Sbjct: 562 FQDIQEKYEIENNRLIIMKEAQKYVHTLTSYERIQRYLQHYQIRPSHVLSQQIN 615 >gi|160876370|ref|YP_001555686.1| valyl-tRNA synthetase [Shewanella baltica OS195] gi|160861892|gb|ABX50426.1| valyl-tRNA synthetase [Shewanella baltica OS195] gi|315268560|gb|ADT95413.1| valyl-tRNA synthetase [Shewanella baltica OS678] Length = 958 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 2/61 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLH 63 KQ+ L+ A IE ++S V + +E A ++ + + +++K E L Sbjct: 898 DKQLEKLRQEIARIEGKLSNQGFVAKAPADVIDKERAKMTDLKRDMDKLNEQKSEFAKLE 957 Query: 64 T 64 Sbjct: 958 A 958 >gi|288957754|ref|YP_003448095.1| ABC transporter ATP-binding protein [Azospirillum sp. B510] gi|288910062|dbj|BAI71551.1| ABC transporter ATP-binding protein [Azospirillum sp. B510] Length = 558 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 2/44 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYD 53 L +RF E+ M++ + + L E + I +D Sbjct: 100 KALLDRFNEVSNLMADPDA--DFDALLAEQGELQEKIDAADAWD 141 >gi|222528290|ref|YP_002572172.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor bescii DSM 6725] gi|222455137|gb|ACM59399.1| Chromosome segregation ATPase-like protein [Caldicellulosiruptor bescii DSM 6725] Length = 1350 Score = 37.9 bits (86), Expect = 2.7, Method: Composition-based stats. Identities = 16/130 (12%), Positives = 47/130 (36%), Gaps = 6/130 (4%) Query: 2 VFLSHKQICDLKNRFAEI----ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 +F K++ ++K E+ ++S+ A KL +E + + ++ Y +K + Sbjct: 333 IFKLQKELLNIKEELKEVDEQKNKKLSQIN--SASQKLEKERQQLIALEEELEKYKRKIK 390 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + + + + + ++L + + + EI+ Sbjct: 391 DSVEEGKLLIESIGFQRFLETLDMYLFGQGSLDILKDEISSFLYQVEIVLKNYEKLAEIK 450 Query: 118 AGTGGSEAAL 127 G L Sbjct: 451 KDLDGFYKNL 460 >gi|306796119|ref|ZP_07434421.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu006] gi|308343443|gb|EFP32294.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu006] Length = 848 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++ L R E+ +S+ + +L + + ++ K++ + Q E++ Sbjct: 411 VEIDEVERLVRRLEIEEMALSKEEDEASAERLAKLRSELADQKEKLAELTTRWQNEKNAI 470 Query: 64 TVIGDHNSDSE 74 ++ D E Sbjct: 471 EIVRDLKEQLE 481 >gi|308370390|ref|ZP_07421333.2| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu003] gi|308375144|ref|ZP_07442858.2| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu007] gi|4098131|gb|AAD00218.1| clpB [Mycobacterium bovis] gi|308332178|gb|EFP21029.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu003] gi|308347335|gb|EFP36186.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu007] gi|323721237|gb|EGB30297.1| endopeptidase subunit ATP binding protein B ClpB [Mycobacterium tuberculosis CDC1551A] Length = 877 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++ L R E+ +S+ + +L + + ++ K++ + Q E++ Sbjct: 440 VEIDEVERLVRRLEIEEMALSKEEDEASAERLAKLRSELADQKEKLAELTTRWQNEKNAI 499 Query: 64 TVIGDHNSDSE 74 ++ D E Sbjct: 500 EIVRDLKEQLE 510 >gi|15607525|ref|NP_214898.1| endopeptidase ATP binding protein [Mycobacterium tuberculosis H37Rv] gi|15839768|ref|NP_334805.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Mycobacterium tuberculosis CDC1551] gi|31791561|ref|NP_854054.1| endopeptidase ATP-binding protein ClpB [Mycobacterium bovis AF2122/97] gi|121636297|ref|YP_976520.1| putative endopeptidase ATP binding protein (chain b) clpB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660150|ref|YP_001281673.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Mycobacterium tuberculosis H37Ra] gi|148821580|ref|YP_001286334.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis F11] gi|215402134|ref|ZP_03414315.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis 02_1987] gi|215409893|ref|ZP_03418701.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis 94_M4241A] gi|215425601|ref|ZP_03423520.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis T92] gi|215429204|ref|ZP_03427123.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis EAS054] gi|215444469|ref|ZP_03431221.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis T85] gi|218752011|ref|ZP_03530807.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis GM 1503] gi|224988769|ref|YP_002643456.1| putative endopeptidase ATP binding protein chain b [Mycobacterium bovis BCG str. Tokyo 172] gi|253797307|ref|YP_003030308.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 1435] gi|254549327|ref|ZP_05139774.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185251|ref|ZP_05762725.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis CPHL_A] gi|260199381|ref|ZP_05766872.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis T46] gi|260203533|ref|ZP_05771024.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis K85] gi|289441763|ref|ZP_06431507.1| ATP-dependent chaperone ClpB [Mycobacterium tuberculosis T46] gi|289445922|ref|ZP_06435666.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis CPHL_A] gi|289552633|ref|ZP_06441843.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 605] gi|289572969|ref|ZP_06453196.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis K85] gi|289744081|ref|ZP_06503459.1| ATP-dependent chaperone clpB [Mycobacterium tuberculosis 02_1987] gi|289748868|ref|ZP_06508246.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis T92] gi|289752413|ref|ZP_06511791.1| clpB [Mycobacterium tuberculosis EAS054] gi|289756452|ref|ZP_06515830.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|289760496|ref|ZP_06519874.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium tuberculosis GM 1503] gi|297632866|ref|ZP_06950646.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 4207] gi|297729841|ref|ZP_06958959.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN R506] gi|298523859|ref|ZP_07011268.1| clpB [Mycobacterium tuberculosis 94_M4241A] gi|306774478|ref|ZP_07412815.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu001] gi|306779225|ref|ZP_07417562.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu002] gi|306787381|ref|ZP_07425703.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu004] gi|306791932|ref|ZP_07430234.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu005] gi|306801978|ref|ZP_07438646.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu008] gi|306966386|ref|ZP_07479047.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu009] gi|306970582|ref|ZP_07483243.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu010] gi|307078309|ref|ZP_07487479.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu011] gi|307082868|ref|ZP_07491981.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu012] gi|313657170|ref|ZP_07814050.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN V2475] gi|54036851|sp|P63287|CLPB_MYCBO RecName: Full=Chaperone protein ClpB gi|54036852|sp|P63288|CLPB_MYCTU RecName: Full=Chaperone protein ClpB gi|2909505|emb|CAA17390.1| PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) [Mycobacterium tuberculosis H37Rv] gi|13879896|gb|AAK44619.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Mycobacterium tuberculosis CDC1551] gi|31617147|emb|CAD93254.1| PROBABLE ENDOPEPTIDASE ATP BINDING PROTEIN (CHAIN B) CLPB (CLPB PROTEIN) (HEAT SHOCK PROTEIN F84.1) [Mycobacterium bovis AF2122/97] gi|121491944|emb|CAL70407.1| Probable endopeptidase ATP binding protein (chain b) clpB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148504302|gb|ABQ72111.1| ATP-dependent Clp protease ATP-binding subunit ClpB [Mycobacterium tuberculosis H37Ra] gi|148720107|gb|ABR04732.1| endopeptidase ATP binding protein subunit B clpB [Mycobacterium tuberculosis F11] gi|224771882|dbj|BAH24688.1| putative endopeptidase ATP binding protein chain b [Mycobacterium bovis BCG str. Tokyo 172] gi|253318810|gb|ACT23413.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 1435] gi|289414682|gb|EFD11922.1| ATP-dependent chaperone ClpB [Mycobacterium tuberculosis T46] gi|289418880|gb|EFD16081.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis CPHL_A] gi|289437265|gb|EFD19758.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 605] gi|289537400|gb|EFD41978.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis K85] gi|289684609|gb|EFD52097.1| ATP-dependent chaperone clpB [Mycobacterium tuberculosis 02_1987] gi|289689455|gb|EFD56884.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis T92] gi|289693000|gb|EFD60429.1| clpB [Mycobacterium tuberculosis EAS054] gi|289708002|gb|EFD72018.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium tuberculosis GM 1503] gi|289712016|gb|EFD76028.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298493653|gb|EFI28947.1| clpB [Mycobacterium tuberculosis 94_M4241A] gi|308216983|gb|EFO76382.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu001] gi|308327825|gb|EFP16676.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu002] gi|308335937|gb|EFP24788.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu004] gi|308339589|gb|EFP28440.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu005] gi|308351279|gb|EFP40130.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu008] gi|308355932|gb|EFP44783.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu009] gi|308359889|gb|EFP48740.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu010] gi|308363790|gb|EFP52641.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu011] gi|308367411|gb|EFP56262.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis SUMu012] gi|326902210|gb|EGE49143.1| endopeptidase subunit ATP binding protein B ClpB [Mycobacterium tuberculosis W-148] gi|328457094|gb|AEB02517.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis KZN 4207] Length = 848 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++ L R E+ +S+ + +L + + ++ K++ + Q E++ Sbjct: 411 VEIDEVERLVRRLEIEEMALSKEEDEASAERLAKLRSELADQKEKLAELTTRWQNEKNAI 470 Query: 64 TVIGDHNSDSE 74 ++ D E Sbjct: 471 EIVRDLKEQLE 481 >gi|332308518|ref|YP_004436369.1| ABC transporter related protein [Glaciecola agarilytica 4H-3-7+YE-5] gi|332175847|gb|AEE25101.1| ABC transporter related protein [Glaciecola agarilytica 4H-3-7+YE-5] Length = 645 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ----D 61 K++ DL+ + IE +M++ DA K A + +++ + ++E + D Sbjct: 573 EKKMADLEAKLELIEQQMADPDIYDADKK-----AELKALLADQASCKIAQEEAEMLWLD 627 Query: 62 LHTVIGDHNSDSEIR 76 I ++ + + Sbjct: 628 AQEQIEAKQAEFDAQ 642 >gi|146343293|ref|YP_001208341.1| class I peptide chain release factor domain-containing protein [Bradyrhizobium sp. ORS278] gi|146196099|emb|CAL80126.1| putative Class I peptide chain release factor domain protein [Bradyrhizobium sp. ORS278] Length = 207 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 2/91 (2%) Query: 177 KFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQH 236 ++ G + V + D+R ++ RA G GGQH Sbjct: 67 RWTRGSLLWVCRSPLRPHHGRKNWFVGI-VDLPLPAQLPMLSTSDVRFESFRAGGPGGQH 125 Query: 237 VNTTDSAVRITHIPTG-IMVTSSEKSQHQNR 266 N T+SAVR H+P+G + +SQH N+ Sbjct: 126 QNKTESAVRAVHLPSGLTAIARDGRSQHGNK 156 >gi|197118419|ref|YP_002138846.1| hydrolase [Geobacter bemidjiensis Bem] gi|197087779|gb|ACH39050.1| hydrolase, putative [Geobacter bemidjiensis Bem] Length = 105 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 35/70 (50%), Positives = 48/70 (68%), Gaps = 1/70 (1%) Query: 215 VDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVL 273 ++I DI+++ RASG GGQH NTTDSAVRI H+PTG++ S +SQ +NR +AM+ L Sbjct: 1 MEIRDVDIKVEFYRASGPGGQHRNTTDSAVRIRHLPTGVVAQASESRSQFENREKAMERL 60 Query: 274 RARLYDVERK 283 L E+K Sbjct: 61 AELLRRREQK 70 >gi|325685688|gb|EGD27767.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 455 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L+ + EI+ M++ + KL ++ + KIS Q ++ Sbjct: 395 EKDLEELEAKEQEIQEAMADPAIAADFSKLGPLQEELTAVQEKISQVSQAWEDASLALE 453 >gi|291223821|ref|XP_002731906.1| PREDICTED: early endosome antigen 1-like [Saccoglossus kowalevskii] Length = 1606 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 36/292 (12%), Positives = 98/292 (33%), Gaps = 11/292 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 KQI +++++ AE E R++E I ++ + + + K S + K +++ Sbjct: 922 EKQIKEIQSKLAETESRLNE-----EQINHQKKTSEFTELCEKFSELETKYTAKEE-KIA 975 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + + ++ DL +K+I E + + + + + E + E+ Sbjct: 976 LVEERNNKLSEDLKNAHNTLQQKDIHFDELQQEVQKVTAEYSEKLKGMQEEQLKL-SEES 1034 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 + ++ Y + + + V+ L+ + + + ++ K Sbjct: 1035 VKYKKEVEEEYNKLKSEKTLVVDSLNETKTIL--EDKNKEFAEMKNIYEDEKQYMKAEAS 1092 Query: 186 QRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVR 245 ++V E ++ +A E I+++T + G + + Sbjct: 1093 RKVE--ERQKQLSELNTVLASTQRHLNEAKSTLEEKIQVETELSERVGQLQTEKHELQEQ 1150 Query: 246 ITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQI 297 + I + S+ L L + ++ +K++I Sbjct: 1151 LHLSNERIKAFQHQMSEQDENLAKQINQCEELQQQMEHKEEVQKDMQKKIEI 1202 >gi|237808180|ref|YP_002892620.1| ABC transporter-like protein [Tolumonas auensis DSM 9187] gi|237500441|gb|ACQ93034.1| ABC transporter related [Tolumonas auensis DSM 9187] Length = 640 Score = 37.9 bits (86), Expect = 2.8, Method: Composition-based stats. Identities = 7/62 (11%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ L+ + I+ ++++ ++ T+E + + +Q ++L + Sbjct: 581 QLEQLEAKIDSIQSQINQPDFFSLPVERTKEI--LDALQQAELNLEQAFARWEELEAMKN 638 Query: 68 DH 69 + Sbjct: 639 EE 640 >gi|328861876|gb|EGG10978.1| hypothetical protein MELLADRAFT_102812 [Melampsora larici-populina 98AG31] Length = 734 Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 8/88 (9%), Positives = 29/88 (32%), Gaps = 13/88 (14%) Query: 7 KQICDLKNRFAEI--ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K+ +L +R ++ E++ + + +E + + ++L Sbjct: 641 KKFPNLLDRLKDLSPEIQTARENQWKEFDAAAKEKTRLEKL-----------ARLEELKD 689 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRE 92 + + ++ +L + K + Sbjct: 690 MSKEKDNLFGCIELIRTATSWFCKRYKN 717 >gi|157363011|ref|YP_001469778.1| peptidoglycan-binding LysM [Thermotoga lettingae TMO] gi|157313615|gb|ABV32714.1| Peptidoglycan-binding LysM [Thermotoga lettingae TMO] Length = 573 Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 28/73 (38%), Gaps = 10/73 (13%) Query: 5 SHKQICDLKNRFAEIELRMSES-----PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + + R E+E R+++ + KL +E + I+ +S +++ Sbjct: 21 DQDLLEQINRRLDELEYRIAQIEKSTYNNQKNIEKLQQEVSKINNEVSSAKKLLDEQKNL 80 Query: 60 -----QDLHTVIG 67 +++ ++ Sbjct: 81 PAVSPDEINEIMA 93 >gi|156552740|ref|XP_001599627.1| PREDICTED: similar to vesicle docking protein P115 [Nasonia vitripennis] Length = 832 Score = 37.5 bits (85), Expect = 2.9, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 36/73 (49%), Gaps = 5/73 (6%) Query: 4 LSHKQICDLKNRFAEIELRMSES-PSVDAYIKL---TEEYAAISP-IISKISIYDQKKQE 58 S++++ KN+ +++E R+SES + ++ + + + ++ K++ Sbjct: 725 SSNEELEKYKNQISDLEKRLSESLTLIQELQSKTVDSKTTTDLENRLKQQTKEFENLKKD 784 Query: 59 EQDLHTVIGDHNS 71 + DL ++ D ++ Sbjct: 785 QDDLLVLLTDQDN 797 >gi|289706251|ref|ZP_06502613.1| ABC transporter, ATP-binding protein YjiK [Micrococcus luteus SK58] gi|289556974|gb|EFD50303.1| ABC transporter, ATP-binding protein YjiK [Micrococcus luteus SK58] Length = 560 Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 3/62 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R+ +I M+ + + L EE + I +D + + + Sbjct: 99 KIQRYNQISEEMANPDA--DFDALMEEMGELQSAIDAADAWD-IDSQLEQAMDALRTPPG 155 Query: 72 DS 73 D Sbjct: 156 DE 157 >gi|289568297|ref|ZP_06448524.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis T17] gi|289542050|gb|EFD45699.1| endopeptidase subunit ATP binding protein B clpB [Mycobacterium tuberculosis T17] Length = 716 Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++ L R E+ +S+ + +L + + ++ K++ + Q E++ Sbjct: 411 VEIDEVERLVRRLEIEEMALSKEEDEASAERLAKLRSELADQKEKLAELTTRWQNEKNAI 470 Query: 64 TVIGDHNSDSE 74 ++ D E Sbjct: 471 EIVRDLKEQLE 481 >gi|123446657|ref|XP_001312077.1| hypothetical protein [Trichomonas vaginalis G3] gi|121893911|gb|EAX99147.1| hypothetical protein TVAG_115510 [Trichomonas vaginalis G3] Length = 283 Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 13/104 (12%), Positives = 38/104 (36%), Gaps = 2/104 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD--LHT 64 ++I L+ EI+ + S++ +L + + + K++ + + + L Sbjct: 25 EKIQKLQTELNEIQKQKSDNEIQSLQSQLNQINEESNKLKEKLNEMESNTNQIDETILSK 84 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDD 108 + SD ++ L+ + + + L K ++ Sbjct: 85 IKELKESDDFKSIYNFLDELSSQGNRKMISKSCEEGLWKKISNK 128 >gi|18978215|ref|NP_579572.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638] gi|18894028|gb|AAL81967.1| chromosome segregation protein smc [Pyrococcus furiosus DSM 3638] Length = 1291 Score = 37.5 bits (85), Expect = 3.0, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ +++R +E R++E K + E I +++KI+ E + Sbjct: 908 ISSLKEELSRIESRIESLESRLNEELL---PRKASLE-EEIEGLVNKINALKNNISENEK 963 Query: 62 LHTVI-GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + I + + E+ + ++ ++LE +I+ L K+ K LEI A T Sbjct: 964 ALELLNKELEKLKSIEENIKGEIRTLREKRKKLEEDISKLREKKEVLQRKLQELEIEANT 1023 >gi|256086975|ref|XP_002579657.1| myosin heavy chain [Schistosoma mansoni] gi|238665125|emb|CAZ35896.1| myosin heavy chain [Schistosoma mansoni] Length = 1095 Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 D++ R E+E R+++ D LTE +S + ++ K++ +DL + + Sbjct: 793 DMEQRIKELEERLADEE--DQAANLTEVKKKMS------AEIEELKKDVEDLESSLQKAE 844 Query: 71 SDSEIRDLAQIEVLAIEKEIREL 93 + + +D + + + E+ Sbjct: 845 QEKQTKDNQIRTLQSEMAQQDEM 867 >gi|269203616|ref|YP_003282885.1| phage major capsid protein [Staphylococcus aureus subsp. aureus ED98] gi|262075906|gb|ACY11879.1| phage major capsid protein [Staphylococcus aureus subsp. aureus ED98] Length = 387 Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 16 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 75 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 76 EAYQSLNDNEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 135 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 136 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFAT 195 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 196 NKFKVFAAISDTVIHGSDVELVNWVE 221 >gi|260906220|ref|ZP_05914542.1| putative ABC transporter ATP-binding protein [Brevibacterium linens BL2] Length = 560 Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF I M+ + + L EE + I +D + + + Sbjct: 96 IKAKLDRFNAISEEMASPDA--DFDALMEEMGKLQEAIDAADAWD-LDSQLEQAMDALRC 152 Query: 69 HNSDSE 74 D E Sbjct: 153 PPPDVE 158 >gi|115488160|ref|NP_001066567.1| Os12g0277500 [Oryza sativa Japonica Group] gi|77554291|gb|ABA97087.1| RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|113649074|dbj|BAF29586.1| Os12g0277500 [Oryza sativa Japonica Group] gi|125536273|gb|EAY82761.1| hypothetical protein OsI_37967 [Oryza sativa Indica Group] gi|313575777|gb|ADR66968.1| 60 kDa chaperonin alpha subunit [Oryza sativa Japonica Group] Length = 578 Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +SE+ S+ KL E A +S ++ I + + E +D I D Sbjct: 375 DEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAATETELEDRQLRIEDA 434 Query: 70 NS 71 + Sbjct: 435 KN 436 >gi|322816204|gb|EFZ24595.1| hypothetical protein TCSYLVIO_9259 [Trypanosoma cruzi] Length = 678 Score = 37.5 bits (85), Expect = 3.1, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 43/184 (23%), Gaps = 1/184 (0%) Query: 114 LEIRAGTGGSEAALF-VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 ++ G+ ++ L + + D D + + Sbjct: 411 CDMNTRNDGATGRVWSAHGLLTALDFTRNDDALPWMQQNFGDIDVASIMRWARFYHSKDL 470 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 ++ + V + + A + + T A Sbjct: 471 MAKDRPRYLARAVAWIELLSKRSHMMEEAPLTYMRKSKPLSLNTNSNLRVAWQTPVARPD 530 Query: 233 GGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 G + + H VT + + + ++ +V K E A Sbjct: 531 GPPRLLAREEGYTFHHNEHSRFVTETYRHPGETLQSRFLAMQPIHTEVSAKEDFQEMYAQ 590 Query: 293 RKLQ 296 ++ Q Sbjct: 591 QQEQ 594 >gi|104774426|ref|YP_619406.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103423507|emb|CAI98409.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 638 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L+ + EI+ M++ + KL ++ + KIS Q ++ Sbjct: 578 EKDLEELEAKEQEIQEAMADPAIAADFSKLGPLQEDLTAVQEKISQVSQAWEDASLALE 636 >gi|292654853|ref|YP_003534750.1| chromosome segregation protein SMC [Haloferax volcanii DS2] gi|291370379|gb|ADE02606.1| chromosome segregation protein SMC [Haloferax volcanii DS2] Length = 1240 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 2/69 (2%) Query: 6 HKQICDLKNRFAEI--ELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +QI DL++ E+ E +S ++L+E A I + ++ + E ++ Sbjct: 359 QEQIDDLEDDIREVKVEKASVKSDIQSKRVELSEVQAEIDSVDTEFDELKSELAERKETL 418 Query: 64 TVIGDHNSD 72 + D +D Sbjct: 419 DELKDEKND 427 >gi|296110035|ref|YP_003616984.1| hypothetical protein Metin_1370 [Methanocaldococcus infernus ME] gi|295434849|gb|ADG14020.1| conserved hypothetical protein [Methanocaldococcus infernus ME] Length = 435 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 +I D+ +R I + ES D + + +S I +++I + ++ ++ Sbjct: 228 KINDIASRLENIGEMLEESVDWDN---VGKIRGELSEIDREMAIIETTLGYLDEVIEIL 283 >gi|212696620|ref|ZP_03304748.1| hypothetical protein ANHYDRO_01160 [Anaerococcus hydrogenalis DSM 7454] gi|212676351|gb|EEB35958.1| hypothetical protein ANHYDRO_01160 [Anaerococcus hydrogenalis DSM 7454] Length = 566 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 40/108 (37%), Gaps = 1/108 (0%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + L+ ++E++MSE + D ++ +EYA S K Y K E + + + Sbjct: 92 KDLISLEKNIRDLEVKMSEEKNPDRLDEIMKEYAKKSEEFEKKQGY-SYKSEIRGVLIGM 150 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 G D + E+ L E L+L + + Sbjct: 151 GFEEEDFQKEVSLLSGGQKARVELACLLLEKPDLILLDEPTNHLDIKA 198 >gi|77164768|ref|YP_343293.1| ABC transporter, ATPase subunit [Nitrosococcus oceani ATCC 19707] gi|254434697|ref|ZP_05048205.1| ABC transporter, ATP-binding protein [Nitrosococcus oceani AFC27] gi|76883082|gb|ABA57763.1| ABC transporter, ATPase subunit [Nitrosococcus oceani ATCC 19707] gi|207091030|gb|EDZ68301.1| ABC transporter, ATP-binding protein [Nitrosococcus oceani AFC27] Length = 598 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K+I + + R+ + + +LT YA + +K+ Q+ +E + L Sbjct: 540 EKKILKAEKSLETFQERLHDPEIMSDSERLTTLYAQLQESKNKVDRLYQRWEELELLRQ 598 >gi|157126537|ref|XP_001660917.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti] gi|108873223|gb|EAT37448.1| chromosome-associated kinesin KIF4A (chromokinesin) [Aedes aegypti] Length = 1173 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 16/115 (13%), Positives = 36/115 (31%), Gaps = 16/115 (13%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH-- 63 +I +L+ + E+ +++ + VD KL EE Q + E +L Sbjct: 562 EDKIKELEKQIEELNDQLNTTKVVDKKSKLAEERR---------KKVQQLEAELAELRKK 612 Query: 64 -----TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 ++ D++ E+ A++ +L + Sbjct: 613 SIQQAKMLQLKEKDTQRVQNLSREIQAMKATRVKLVKSMRAESENFRQWKINREK 667 >gi|325963661|ref|YP_004241567.1| ATPase component of ABC transporters with duplicated ATPase domain [Arthrobacter phenanthrenivorans Sphe3] gi|323469748|gb|ADX73433.1| ATPase component of ABC transporters with duplicated ATPase domain [Arthrobacter phenanthrenivorans Sphe3] Length = 560 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF EI M+ + Y L EE + I +D + + + + Sbjct: 99 KIQRFNEISEEMASPDA--DYDTLLEEMGQLQEAIDAADAWD-LDSQLEQAMDALRCPPA 155 Query: 72 DSE 74 D++ Sbjct: 156 DAD 158 >gi|300811164|ref|ZP_07091676.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497868|gb|EFK32878.1| ABC transporter, ATP-binding protein [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 638 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L+ + EI+ M++ + KL ++ + KIS Q ++ Sbjct: 578 EKDLEELEAKEQEIQEAMADPAIAADFSKLGPLQEDLTAVQEKISQVSQAWEDASLALE 636 >gi|71410844|ref|XP_807697.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70871754|gb|EAN85846.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 650 Score = 37.5 bits (85), Expect = 3.2, Method: Composition-based stats. Identities = 17/184 (9%), Positives = 43/184 (23%), Gaps = 1/184 (0%) Query: 114 LEIRAGTGGSEAALF-VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGV 172 ++ G+ ++ L + + D D + + Sbjct: 411 CDMNTRNDGATGRVWSAHGLLTALDFKQNDDALPWMQQNFGDIDVASVMRWARFYHSKDL 470 Query: 173 FSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGS 232 ++ + V + + A + + T A Sbjct: 471 MAKDRPRYLARAVAWIELLSKRSHMMEEAPLTYMRKSKPLSLNTNSNLRVAWQTPVARPD 530 Query: 233 GGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSAN 292 G + + H VT + + + ++ +V K E A Sbjct: 531 GPPRLLAREEGYTFHHNEHSRFVTETYRHPGETLQSRFLAMQPIHTEVSAKEDFQEMYAQ 590 Query: 293 RKLQ 296 ++ Q Sbjct: 591 QQEQ 594 >gi|317127421|ref|YP_004093703.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472369|gb|ADU28972.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1287 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 10/68 (14%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLHT 64 ++I +L AE++ R+++ L + I ++ ++ +++ ++ L Sbjct: 1135 QQRINELMELIAELQARIADLEGSSEIADLENRLSEIEGLLEELKSNFNELEEYVSHLEA 1194 Query: 65 VIGDHNSD 72 +I D + Sbjct: 1195 LIKDLKDE 1202 >gi|262052893|ref|ZP_06025076.1| prophage L54a, major capsid protein, putative [Staphylococcus aureus 930918-3] gi|259159200|gb|EEW44261.1| prophage L54a, major capsid protein, putative [Staphylococcus aureus 930918-3] gi|283469603|emb|CAQ48814.1| phage major capsid protein, HK97 [Staphylococcus aureus subsp. aureus ST398] gi|283470728|emb|CAQ49939.1| phage major capsid protein, HK97 [Staphylococcus aureus subsp. aureus ST398] Length = 387 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 16 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 75 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 76 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 135 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 136 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 195 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 196 NKFKVFAAISDTVIHGSDVDLVNWVE 221 >gi|11498637|ref|NP_069865.1| chromosome segregation protein [Archaeoglobus fulgidus DSM 4304] gi|18201999|sp|O29230|RAD50_ARCFU RecName: Full=DNA double-strand break repair rad50 ATPase gi|2649562|gb|AAB90211.1| purine NTPase, putative [Archaeoglobus fulgidus DSM 4304] Length = 886 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 1/62 (1%) Query: 12 LKNRFAEIELRMSES-PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 L+ + E+E ++ E ++ K +E + P + SI ++ E + Sbjct: 251 LEEKLRELEKQLKEVVERIEDLEKKAKEVKELKPKAERYSILEKLLSEINQALRDVEKRE 310 Query: 71 SD 72 D Sbjct: 311 GD 312 >gi|192362423|ref|YP_001984000.1| ABC transporter ATP-binding protein [Cellvibrio japonicus Ueda107] gi|190688588|gb|ACE86266.1| ABC transporter, ATP-binding protein [Cellvibrio japonicus Ueda107] Length = 630 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 28/62 (45%), Gaps = 5/62 (8%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ L+ R +IE + ++ D K T + ++++ S + QE ++ +I Sbjct: 568 QLEKLQKRLGDIESLLGDTSIYDDKNKAT-----LQELLAEQSQLTAQLQETEENWLLIS 622 Query: 68 DH 69 + Sbjct: 623 EE 624 >gi|116514525|ref|YP_813431.1| ABC transporter ATPase [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116093840|gb|ABJ58993.1| ATPase component of ABC transporter with duplicated ATPase domains [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 630 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 24/59 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 K + +L+ + EI+ M++ + KL ++ + KIS Q ++ Sbjct: 570 EKDLEELEAKEQEIQEAMADPAIAADFSKLGPLQEDLTAVQEKISQVSQAWEDASLALE 628 >gi|239917488|ref|YP_002957046.1| ATPase component of ABC transporters with duplicated ATPase domain [Micrococcus luteus NCTC 2665] gi|281414021|ref|ZP_06245763.1| putative ABC transporter ATP-binding protein [Micrococcus luteus NCTC 2665] gi|239838695|gb|ACS30492.1| ATPase component of ABC transporters with duplicated ATPase domain [Micrococcus luteus NCTC 2665] Length = 560 Score = 37.5 bits (85), Expect = 3.3, Method: Composition-based stats. Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 3/62 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 R+ +I M+ + + L EE + I +D + + + Sbjct: 99 KIQRYNQISEEMANPDA--DFDALMEEMGELQSAIDAADAWD-IDSQLEQAMDALRTPPG 155 Query: 72 DS 73 D Sbjct: 156 DE 157 >gi|198427187|ref|XP_002127446.1| PREDICTED: hypothetical protein [Ciona intestinalis] Length = 212 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 7/35 (20%) Query: 300 GDRSER---IRTYNFSQGRITDHRINLTLYKLEYV 331 GDRS R IRTY + R RI++ ++ + + Sbjct: 139 GDRSSRASGIRTYVYDPAR----RISIEVHDEDTI 169 >gi|315081138|gb|EFT53114.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL078PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|255072429|ref|XP_002499889.1| predicted protein [Micromonas sp. RCC299] gi|226515151|gb|ACO61147.1| predicted protein [Micromonas sp. RCC299] Length = 588 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ R A+++ ++ES S+ KL+E A ++ ++ I + + E +D I D Sbjct: 376 EEIDIRVAQLKKELAESDSIYDTQKLSERIAKLAGGVAVIKVGAATETELEDRKLRIEDA 435 Query: 70 NS 71 + Sbjct: 436 KN 437 >gi|156938172|ref|YP_001435968.1| SMC domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156567156|gb|ABU82561.1| SMC domain protein [Ignicoccus hospitalis KIN4/I] Length = 878 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 49/134 (36%), Gaps = 9/134 (6%) Query: 9 ICDLKNRFAEIELRMSES-PSVDAYIKLTEEYAA--------ISPIISKISIYDQKKQEE 59 + DLK RF E++ ++S + SV+ Y KL +E + + K + Q + + Sbjct: 516 LADLKKRFNELKEQLSRTRASVEHYDKLVKEVKEELSAVTAQLEELKRKEGMLRQIEHQL 575 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 ++L V + E R + L + ELE I L + S E++ Sbjct: 576 EELRGVDASKEEEVEKRLSEIKKELEVLGSPEELERRIAELERLASKKKELSAAAELKRR 635 Query: 120 TGGSEAALFVGDLF 133 F Sbjct: 636 EEAELKRELASLGF 649 >gi|154287970|ref|XP_001544780.1| predicted protein [Ajellomyces capsulatus NAm1] gi|150408421|gb|EDN03962.1| predicted protein [Ajellomyces capsulatus NAm1] Length = 2152 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYI-KLTEEYAAISPIISKISIYDQKKQEEQ 60 + + Q+ + R E+E ++ +D Y +E I+ + + Sbjct: 1932 IMVLQDQLQQREGRIEELEQELAA---IDKYAPAKVKER---ETEINWLRELLGVR--LD 1983 Query: 61 DLHTVIG 67 DL +I Sbjct: 1984 DLQDIIN 1990 >gi|327334130|gb|EGE75844.1| ABC transporter, ATP-binding protein [Propionibacterium acnes HL097PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|314963782|gb|EFT07882.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL082PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|313773626|gb|EFS39592.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL074PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.4, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|163784961|ref|ZP_02179710.1| hypothetical protein HG1285_11183 [Hydrogenivirga sp. 128-5-R1-1] gi|159879771|gb|EDP73526.1| hypothetical protein HG1285_11183 [Hydrogenivirga sp. 128-5-R1-1] Length = 436 Score = 37.5 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 5/37 (13%), Positives = 16/37 (43%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS 43 +++ DL + E++ ++ + KL + + Sbjct: 218 EKMLDLIKKINEVQNKLQSTKDPKEKQKLQKIMKDLE 254 >gi|270307641|ref|YP_003329699.1| ABC transporter, ATP-binding protein [Dehalococcoides sp. VS] gi|270153533|gb|ACZ61371.1| ABC transporter, ATP-binding protein [Dehalococcoides sp. VS] Length = 663 Score = 37.5 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 4/64 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKL---TEEYAA-ISPIISKISIYDQKKQEEQDLHT 64 I +L+ R E+E +++ + K + EY +++ + + Q+ L Sbjct: 593 ITNLEQRKQELETLLADPDLYRSGQKAADTSAEYKNCKEQLVTLGDKWLKLCQQNDALKQ 652 Query: 65 VIGD 68 + D Sbjct: 653 KLED 656 >gi|14590941|ref|NP_143015.1| ATP-dependent helicase LHR [Pyrococcus horikoshii OT3] gi|3257526|dbj|BAA30209.1| 1352aa long hypothetical ATP-dependent helicase LHR [Pyrococcus horikoshii OT3] Length = 1352 Score = 37.5 bits (85), Expect = 3.5, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI------YDQKKQEEQDL 62 I +L+ R EIE ++ + + ++ + + II + +E L Sbjct: 721 IPNLEKRLKEIEEKLGYPGTYNR-REI--RRSELKAIIKLYEKVARERGLNDVLKELSYL 777 Query: 63 HTVIG 67 + Sbjct: 778 KELSE 782 >gi|313127260|ref|YP_004037530.1| condensin subunit smc [Halogeometricum borinquense DSM 11551] gi|312293625|gb|ADQ68085.1| condensin subunit Smc [Halogeometricum borinquense DSM 11551] Length = 1198 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 25/65 (38%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I D+++ E+E +++S + + E A I ++ D + E Q Sbjct: 794 DIDDVQSEIDELESELADSKIPELTAQADEIRAEIEEKEDRMDELDGRLNELQLEKEYAE 853 Query: 68 DHNSD 72 D D Sbjct: 854 DAIED 858 >gi|297810689|ref|XP_002873228.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297319065|gb|EFH49487.1| leucine-rich repeat family protein [Arabidopsis lyrata subsp. lyrata] Length = 506 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 8/75 (10%) Query: 5 SHKQICDLKNRFAEIELRMSE--------SPSVDAYIKLTEEYAAISPIISKISIYDQKK 56 H+ + + R EI+ +SE +D K + A+ + + + Sbjct: 90 DHETVDKARARLREIDASLSESFEEIALSPNDIDVAEKEQKRREAVDQEKTWYNSILKLN 149 Query: 57 QEEQDLHTVIGDHNS 71 + + ++ + Sbjct: 150 ELHESYEKLLKEAEE 164 >gi|116670964|ref|YP_831897.1| putative ABC transporter ATP-binding protein [Arthrobacter sp. FB24] gi|116611073|gb|ABK03797.1| ABC transporter related protein [Arthrobacter sp. FB24] Length = 560 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF EI M+ + Y L EE + I +D + + + + Sbjct: 99 KIQRFNEISEEMANPDA--DYDTLLEEMGQLQEAIDAADAWD-LDSQLEQAMDALRCPPA 155 Query: 72 DSE 74 D++ Sbjct: 156 DAD 158 >gi|314923745|gb|EFS87576.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL001PA1] gi|314966132|gb|EFT10231.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL082PA2] gi|315095023|gb|EFT66999.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL060PA1] gi|315104360|gb|EFT76336.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL050PA2] gi|327328199|gb|EGE69968.1| ABC transporter, ATP-binding protein [Propionibacterium acnes HL103PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|325202191|gb|ADY97645.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis M01-240149] Length = 636 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|315100417|gb|EFT72393.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL046PA1] Length = 561 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|313763473|gb|EFS34837.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL013PA1] gi|313816654|gb|EFS54368.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL059PA1] gi|313829518|gb|EFS67232.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL063PA2] gi|314914835|gb|EFS78666.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL005PA4] gi|314919413|gb|EFS83244.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL050PA1] gi|314920680|gb|EFS84511.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL050PA3] gi|314930560|gb|EFS94391.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL067PA1] gi|314954486|gb|EFS98892.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL027PA1] gi|314957581|gb|EFT01684.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL002PA1] gi|314968392|gb|EFT12490.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL037PA1] gi|315099099|gb|EFT71075.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL059PA2] gi|315109123|gb|EFT81099.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL030PA2] gi|327454852|gb|EGF01507.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL087PA3] gi|327457863|gb|EGF04518.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL083PA2] gi|328755317|gb|EGF68933.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL087PA1] gi|328758202|gb|EGF71818.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL025PA2] Length = 561 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|309803048|ref|ZP_07697149.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium JCVIHMP022] gi|308220515|gb|EFO76826.1| ABC transporter, ATP-binding protein [Bifidobacterium dentium JCVIHMP022] Length = 766 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +++ L+ R AE+E +M+E Y L + + + + + + E + Sbjct: 709 ERKLAKLEERKAELESQMAEHD-PSDYEGLGKINGQLQAVADESESLEMEWMELSEQLE 766 >gi|50843104|ref|YP_056331.1| putative ABC transporter ATP-binding protein [Propionibacterium acnes KPA171202] gi|289426494|ref|ZP_06428237.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes SK187] gi|289428728|ref|ZP_06430411.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes J165] gi|295131156|ref|YP_003581819.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes SK137] gi|50840706|gb|AAT83373.1| ABC transporter ATP-binding protein [Propionibacterium acnes KPA171202] gi|289153222|gb|EFD01940.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes SK187] gi|289158126|gb|EFD06346.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes J165] gi|291375521|gb|ADD99375.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes SK137] gi|313793863|gb|EFS41887.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL110PA1] gi|313801255|gb|EFS42506.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL110PA2] gi|313808066|gb|EFS46547.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL087PA2] gi|313811462|gb|EFS49176.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL083PA1] gi|313813513|gb|EFS51227.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL025PA1] gi|313819636|gb|EFS57350.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL046PA2] gi|313822040|gb|EFS59754.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL036PA1] gi|313823724|gb|EFS61438.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL036PA2] gi|313826046|gb|EFS63760.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL063PA1] gi|313831202|gb|EFS68916.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL007PA1] gi|313834225|gb|EFS71939.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL056PA1] gi|313840023|gb|EFS77737.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL086PA1] gi|314924783|gb|EFS88614.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL036PA3] gi|314961976|gb|EFT06077.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL002PA2] gi|314974079|gb|EFT18175.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL053PA1] gi|314976632|gb|EFT20727.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL045PA1] gi|314978918|gb|EFT23012.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL072PA2] gi|314984295|gb|EFT28387.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL005PA1] gi|314986641|gb|EFT30733.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL005PA2] gi|314990997|gb|EFT35088.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL005PA3] gi|315079631|gb|EFT51624.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL053PA2] gi|315083656|gb|EFT55632.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL027PA2] gi|315087025|gb|EFT59001.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL002PA3] gi|315089200|gb|EFT61176.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL072PA1] gi|315095423|gb|EFT67399.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL038PA1] gi|315106890|gb|EFT78866.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL030PA1] gi|327328518|gb|EGE70280.1| ABC transporter, ATP-binding protein [Propionibacterium acnes HL096PA2] gi|327329617|gb|EGE71373.1| ABC transporter, ATP-binding protein [Propionibacterium acnes HL096PA3] gi|327444305|gb|EGE90959.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL043PA2] gi|327444813|gb|EGE91467.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL043PA1] gi|327446301|gb|EGE92955.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL013PA2] gi|327452111|gb|EGE98765.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL092PA1] gi|328752446|gb|EGF66062.1| ATP-binding cassette protein, ChvD family [Propionibacterium acnes HL020PA1] gi|328759953|gb|EGF73537.1| ABC transporter, ATP-binding protein [Propionibacterium acnes HL099PA1] gi|332676032|gb|AEE72848.1| ABC transporter ATP-binding protein [Propionibacterium acnes 266] Length = 561 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 9/66 (13%), Positives = 20/66 (30%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF E+ M+ + + L E + + + +D + + Sbjct: 95 DIKAKLARFEEVSAEMANPDA--DFDALMAEMGELQTELDNANAWD-IDTRLEQAMDALQ 151 Query: 68 DHNSDS 73 D+ Sbjct: 152 CPPGDT 157 >gi|82752841|gb|ABB89816.1| cortactin-binding protein 2 [Monodelphis domestica] Length = 1637 Score = 37.5 bits (85), Expect = 3.6, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 46/136 (33%), Gaps = 13/136 (9%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ + + ++ K+ EE + +++ + Sbjct: 113 MEKLQLQTLEQEHKKLSARLEDERGKNKHVVLMLVKECKQLSGKIIEEAQKLEEVMASLE 172 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 +K E ++ T +++ E + Q+ E+E + ++ Sbjct: 173 EEKKKTNELEEALTAEKQRSAEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEID 232 Query: 111 SCILEIRAGTGGSEAA 126 I G+++ Sbjct: 233 KMKKMIEQLKKGNDSK 248 >gi|312370878|gb|EFR19185.1| hypothetical protein AND_22936 [Anopheles darlingi] Length = 225 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 1/88 (1%) Query: 210 AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSE-KSQHQNRLR 268 + +D+ +R SG GGQ V T++ V +TH PTG++V +S +NR Sbjct: 107 DNSRVPVLQEDDLEESFVRGSGPGGQSVAKTNNKVVLTHKPTGLVVQCHTSRSLFENRRI 166 Query: 269 AMKVLRARLYDVERKRMANERSANRKLQ 296 A ++L +L + + E R Q Sbjct: 167 ARQLLVTKLDQLINGEQSVEAQRQRLDQ 194 >gi|258427136|ref|ZP_05688058.1| bacteriophage capsid protein [Staphylococcus aureus A9299] gi|257849914|gb|EEV73873.1| bacteriophage capsid protein [Staphylococcus aureus A9299] Length = 402 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 91 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|227488629|ref|ZP_03918945.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227091523|gb|EEI26835.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 491 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA-ISPIISK 48 ++ DL R + R++ VD Y++L ++Y+ ++ + S+ Sbjct: 376 DRLDDLHERLTALTARIASPSFVDEYVELLDDYSHTLAKVKSE 418 >gi|126340599|ref|XP_001364665.1| PREDICTED: similar to cortactin-binding protein 2 [Monodelphis domestica] Length = 1663 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 15/136 (11%), Positives = 46/136 (33%), Gaps = 13/136 (9%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ + + ++ K+ EE + +++ + Sbjct: 140 MEKLQLQTLEQEHKKLSARLEDERGKNKHVVLMLVKECKQLSGKIIEEAQKLEEVMASLE 199 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 +K E ++ T +++ E + Q+ E+E + ++ Sbjct: 200 EEKKKTNELEEALTAEKQRSAEMEAQMEKQLSEFDTEREQLRAKLNREEAHTTDLKEEID 259 Query: 111 SCILEIRAGTGGSEAA 126 I G+++ Sbjct: 260 KMKKMIEQLKKGNDSK 275 >gi|125974303|ref|YP_001038213.1| ABC transporter related protein [Clostridium thermocellum ATCC 27405] gi|256003479|ref|ZP_05428469.1| ABC transporter related protein [Clostridium thermocellum DSM 2360] gi|281418357|ref|ZP_06249377.1| ABC transporter related protein [Clostridium thermocellum JW20] gi|125714528|gb|ABN53020.1| ABC transporter related protein [Clostridium thermocellum ATCC 27405] gi|255992503|gb|EEU02595.1| ABC transporter related protein [Clostridium thermocellum DSM 2360] gi|281409759|gb|EFB40017.1| ABC transporter related protein [Clostridium thermocellum JW20] gi|316941451|gb|ADU75485.1| ABC transporter related protein [Clostridium thermocellum DSM 1313] Length = 638 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 26/55 (47%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 + K+I D + R EIE +M+ V ++KL E + ++ + K+ + Sbjct: 578 TEKEITDTEARIKEIENQMTNEEVVSDHVKLVELHNELNELNLKLEQLYELWDNL 632 >gi|159109360|ref|XP_001704945.1| Spindle pole protein, putative [Giardia lamblia ATCC 50803] gi|157433021|gb|EDO77271.1| Spindle pole protein, putative [Giardia lamblia ATCC 50803] Length = 693 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 17/121 (14%), Positives = 42/121 (34%), Gaps = 2/121 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + R +E R+ + A + +E A + ++ ++ QEE D Sbjct: 328 ERDLEQKVARIHALETRIQDMN--QAATSMIKERADLDTLVQSLNATITSLQEELDSLIA 385 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 G + + +++ I + + + L + + + E R G +E+ Sbjct: 386 AGKKQEEKHLVEMSDIRGAMQKAVEDVNKQDQENAQLNDRIHELEEALNEARRRAGAAES 445 Query: 126 A 126 Sbjct: 446 E 446 >gi|78499691|gb|ABB45845.1| hypothetical protein [Eutrema halophilum] Length = 1061 Score = 37.5 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 13/146 (8%) Query: 2 VFLSHKQICDLKNRFAEIELRM---SESPSVDAYIKLTEEYAAIS------PIISKISIY 52 V + L+ A++E + S+ L E + ++ Sbjct: 350 VMSDKALVKHLQRELAKLESELRSPSQPLIASDSTALLTE-KDLEVEKLKKEVVQLAQQL 408 Query: 53 DQKKQEEQDLHTVIGDH---NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 +Q + E +DL ++G+ ++ + ++ + ++R + P Sbjct: 409 EQARSEIEDLRRMVGEEKQREKETLSTESVEVLLEHQYPKLRVRSAWDSENTTPLSPISA 468 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRM 135 L R+ E +F FR+ Sbjct: 469 HRSSLSPRSTEYSYEENVFQLSDFRI 494 >gi|332025000|gb|EGI65187.1| General vesicular transport factor p115 [Acromyrmex echinatior] Length = 1386 Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHTVIG 67 + DL+NR AE M + D K +E + + + KI ++ K++++ L ++ Sbjct: 744 VADLENRLAEYTHIMQQHNEKD---KENKE-SDLESQLKLKIDELEKLKKDQEALLELLT 799 Query: 68 DHNS 71 D +S Sbjct: 800 DQDS 803 >gi|85860191|ref|YP_462393.1| peptide chain release factor [Syntrophus aciditrophicus SB] gi|85723282|gb|ABC78225.1| peptide chain release factor [Syntrophus aciditrophicus SB] Length = 136 Score = 37.1 bits (84), Expect = 3.7, Method: Composition-based stats. Identities = 30/79 (37%), Positives = 49/79 (62%), Gaps = 1/79 (1%) Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRA 275 I +D+R +R+SG GGQ+VN T + V + H+PTG+ V ++SQ NRL A ++L Sbjct: 20 ISEDDLRETFIRSSGPGGQNVNKTATCVYLVHLPTGLSVKCQQDRSQTVNRLLARRLLLD 79 Query: 276 RLYDVERKRMANERSANRK 294 R+ ++ R+A E++ K Sbjct: 80 RIERLKTGRIAAEKARIEK 98 >gi|313680233|ref|YP_004057972.1| valyl-tRNA synthetase [Oceanithermus profundus DSM 14977] gi|313152948|gb|ADR36799.1| valyl-tRNA synthetase [Oceanithermus profundus DSM 14977] Length = 866 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 7/53 (13%), Positives = 19/53 (35%), Gaps = 2/53 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKK 56 K+ +L+ R A +E +++ + + E + S++ Sbjct: 811 QKKASELERRIAGLEKKLANPGFTERAPAEVVERERRNLEEAKSQLERIRAVL 863 >gi|254673185|emb|CBA08074.1| ABC transporter, ATP-binding protein [Neisseria meningitidis alpha275] Length = 636 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|52841585|ref|YP_095384.1| SidG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52628696|gb|AAU27437.1| SidG [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 974 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQEEQDL 62 LS K I +L + E++ ++ L +I K +Q K +E+ L Sbjct: 386 LSPKSIENLIDHIDELKNELASKQEKKNERNLN--------LIKKYEELCEQYKDDEEGL 437 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + + D E + A+ ++ EI++L + L K++ S LE Sbjct: 438 EEALWEEGIDVEEVNSAKKDISKPAPEIQKLTDLQEQLRNHKESGVKLSSELE 490 >gi|325136398|gb|EGC59006.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis M0579] Length = 636 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|325128161|gb|EGC51052.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis N1568] Length = 636 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|309380006|emb|CBX21417.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 636 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K I + K+ +++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQNRAEEIETLLLEKLERWERLE 628 >gi|317127994|ref|YP_004094276.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] gi|315472942|gb|ADU29545.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] Length = 1665 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 32/70 (45%), Gaps = 1/70 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 ++I +L+ A+++ R+SE ++L A + +++ + Y + +L Sbjct: 1518 QEKIHELEEIIADLQDRISELEDSSDIVELELRVAELEGQLVALQAQYSDLEDFVAELEQ 1577 Query: 65 VIGDHNSDSE 74 I D S+ E Sbjct: 1578 RISDLRSELE 1587 >gi|154509212|ref|ZP_02044854.1| hypothetical protein ACTODO_01733 [Actinomyces odontolyticus ATCC 17982] gi|153798846|gb|EDN81266.1| hypothetical protein ACTODO_01733 [Actinomyces odontolyticus ATCC 17982] Length = 560 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I + RF EI M+ + + L EE + I + +D + + Sbjct: 95 DIFEKLARFNEISEEMANPDA--DFDALMEEMGKLQTEIDAANAWD-IDSQLDQAMDALR 151 Query: 68 DHNSDS 73 D Sbjct: 152 CPPPDQ 157 >gi|291616938|ref|YP_003519680.1| Uup [Pantoea ananatis LMG 20103] gi|291151968|gb|ADD76552.1| Uup [Pantoea ananatis LMG 20103] Length = 639 Score = 37.1 bits (84), Expect = 3.8, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ L+ R E++ +MS + + + + ++L ++ Sbjct: 579 QKLEQLEARIGELQAKMSHPDFFSQPHD--KTQPVLDELADVEQQLETAFARWEELESM 635 >gi|313884055|ref|ZP_07817821.1| putative lipoprotein [Eremococcus coleocola ACS-139-V-Col8] gi|312620502|gb|EFR31925.1| putative lipoprotein [Eremococcus coleocola ACS-139-V-Col8] Length = 310 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 3 FLSHK-QICDLKNRFAEIELRMSESPS-VDAYIKLTEEYAAISPIISKISIYDQKKQE 58 +S + Q+ +L NR E+E + + ++ L E ++ I + E Sbjct: 142 MISQEEQLEELNNRLKEVEEDLKDEDITLEQKQALRAEKNSLEDQIKALENQQDSTNE 199 >gi|282921758|ref|ZP_06329475.1| phage major capsid protein [Staphylococcus aureus A9765] gi|282594020|gb|EFB99009.1| phage major capsid protein [Staphylococcus aureus A9765] Length = 402 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 91 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|254230741|ref|ZP_04924068.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium tuberculosis C] gi|124599800|gb|EAY58810.1| endopeptidase ATP binding protein (chain B) clpB [Mycobacterium tuberculosis C] Length = 594 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 29/71 (40%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 + ++ L R E+ +S+ + +L + + ++ K++ + Q E++ Sbjct: 290 VEIDEVERLVRRLEIEEMALSKEEDEASAERLAKLRSELADQKEKLAELTTRWQNEKNAI 349 Query: 64 TVIGDHNSDSE 74 ++ D E Sbjct: 350 EIVRDLKEQLE 360 >gi|171741393|ref|ZP_02917200.1| hypothetical protein BIFDEN_00476 [Bifidobacterium dentium ATCC 27678] gi|283455257|ref|YP_003359821.1| ABC transporter ATP-binding protein [Bifidobacterium dentium Bd1] gi|171277007|gb|EDT44668.1| hypothetical protein BIFDEN_00476 [Bifidobacterium dentium ATCC 27678] gi|283101891|gb|ADB08997.1| ATP-binding protein of ABC transporter system [Bifidobacterium dentium Bd1] Length = 740 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +++ L+ R AE+E +M+E Y L + + + + + + E + Sbjct: 683 ERKLAKLEERKAELESQMAEHD-PSDYEGLGKINGQLQAVADESESLEMEWMELSEQLE 740 >gi|325208055|gb|ADZ03507.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis NZ-05/33] Length = 636 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|261392625|emb|CAX50189.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis 8013] gi|325204096|gb|ADY99549.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis M01-240355] Length = 636 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|253699344|ref|YP_003020533.1| ABC transporter [Geobacter sp. M21] gi|251774194|gb|ACT16775.1| ABC transporter related protein [Geobacter sp. M21] Length = 648 Score = 37.1 bits (84), Expect = 3.9, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK---LTEEYAAI-SPIISKISIYDQK 55 ++I + AE+E M++ + E +A + I S ++ Sbjct: 595 EQKIATKEGELAELEQAMAKPDFFSDHEAARIAGERHAQLTEEIASLYQAWEAA 648 >gi|224476075|ref|YP_002633681.1| ClpB chaperone [Staphylococcus carnosus subsp. carnosus TM300] gi|222420682|emb|CAL27496.1| ClpB chaperone [Staphylococcus carnosus subsp. carnosus TM300] Length = 869 Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 19/119 (15%), Positives = 47/119 (39%), Gaps = 5/119 (4%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 + R E++ +S + K + + + KIS +K+ E + + D ++ Sbjct: 437 QQRLKELQEELS-----NEKEKQSALQSRVEQEKEKISKLQEKRAELDESRKALEDAENN 491 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 ++ A+++ I K +EL + + + D+D+ + G + + G Sbjct: 492 YDLEKAAELQHGKIPKLEKELRDLEDAFQDEQSEDNDRIIREIVTDEEIGDIVSQWTGI 550 >gi|125546535|gb|EAY92674.1| hypothetical protein OsI_14427 [Oryza sativa Indica Group] Length = 584 Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +S++ S KL E A +S ++ I + + E +D I D Sbjct: 380 DEIQARIAQLKRELSQTDSAYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 439 Query: 70 NS 71 + Sbjct: 440 KN 441 >gi|31193919|gb|AAP44754.1| putative rubisco subunit binding-protein alpha subunit precursor (60 kDa chaperonin alpha subunit) [Oryza sativa Japonica Group] gi|108712216|gb|ABG00011.1| RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] gi|125588715|gb|EAZ29379.1| hypothetical protein OsJ_13451 [Oryza sativa Japonica Group] gi|313575771|gb|ADR66965.1| 60 kDa chaperonin alpha subunit [Oryza sativa Japonica Group] Length = 584 Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +S++ S KL E A +S ++ I + + E +D I D Sbjct: 380 DEIQARIAQLKRELSQTDSAYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 439 Query: 70 NS 71 + Sbjct: 440 KN 441 >gi|116200067|ref|XP_001225845.1| hypothetical protein CHGG_08189 [Chaetomium globosum CBS 148.51] gi|88179468|gb|EAQ86936.1| hypothetical protein CHGG_08189 [Chaetomium globosum CBS 148.51] Length = 1351 Score = 37.1 bits (84), Expect = 4.0, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 3/112 (2%) Query: 7 KQICDLKNRFAEIELR-MSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLHT 64 K+I DLK + +E + + + ++ K+ E II + Y ++QE +L Sbjct: 329 KEIEDLKAKLRVLEKKRIEDREKLNDLDKMKSERDRFERIIQTLQIKYQPQQQEIAELKR 388 Query: 65 VIGDHNSD-SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + + S + D+ Q A+E + E + K D E Sbjct: 389 QLKEAESRLYNVEDIQQEHETAMELATLDREMAEEMADVYKTELDALKHKTE 440 >gi|40792788|gb|AAR90361.1| SidG [Legionella pneumophila] Length = 965 Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 9/113 (7%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQEEQDL 62 LS K I +L + E++ ++ L +I K +Q K +E+ L Sbjct: 377 LSPKSIENLIDHIDELKNELASKQEKKNERNLN--------LIKKYEELCEQYKDDEEGL 428 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 + + D E + A+ ++ EI++L + L K++ S LE Sbjct: 429 EEALWEEGIDVEEVNSAKKDISKPAPEIQKLTDLQEQLRNHKESGVKLSSELE 481 >gi|325267738|ref|ZP_08134389.1| ABC superfamily ATP binding cassette transporter, ABC protein [Kingella denitrificans ATCC 33394] gi|324980862|gb|EGC16523.1| ABC superfamily ATP binding cassette transporter, ABC protein [Kingella denitrificans ATCC 33394] Length = 677 Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ A++ ++S+ Y K A I + K+ ++ + Sbjct: 618 DEIAALEAEQADLNAQLSDPEIFKDYEKAGSLQARAEEIETLLLEKLERWEMLE 671 >gi|167508997|gb|ABZ81638.1| SiM protein [Streptococcus iniae] Length = 579 Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 24/169 (14%), Positives = 55/169 (32%), Gaps = 6/169 (3%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 K + + E+E +++E+ + K+ E A + I + + +E L+ + Sbjct: 404 EKALEKAQAEAKELEAKLAETKA--ELEKVQAEKAELEATIETMK--KEHAEELDKLNAL 459 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 + D +E + ++ + L NE L + + +I G ++ Sbjct: 460 LADKEKLNEELNKMIADLKKELENQANLSNEEKAQLKAELEKLKQELAAKINMPMGNTKG 519 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFS 174 + + V+ S D G A+ V + Sbjct: 520 M--ANGAGNAQTQANNGQNNTVKNQLPSTGDKAGNPFFTASAIAVMVGA 566 >gi|116327034|ref|YP_796754.1| ATP-binding protein of an ABC transporter complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116332307|ref|YP_802025.1| ATP-binding protein of an ABC transporter complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119778|gb|ABJ77821.1| ATP-binding protein of an ABC transporter complex [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116125996|gb|ABJ77267.1| ATP-binding protein of an ABC transporter complex [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 647 Score = 37.1 bits (84), Expect = 4.1, Method: Composition-based stats. Identities = 7/61 (11%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ-DLHTVI 66 +I L+ +E +++ E ++ + ++I+ + Q +L ++ Sbjct: 584 KIELLEKSKKNLEEVLADPDFFKN-RSYQLELDNLNEVKNEITRLTSAWESLQFELEDLL 642 Query: 67 G 67 Sbjct: 643 E 643 >gi|306823681|ref|ZP_07457056.1| ABC superfamily ATP binding cassette transporter, ABC protein [Bifidobacterium dentium ATCC 27679] gi|304553388|gb|EFM41300.1| ABC superfamily ATP binding cassette transporter, ABC protein [Bifidobacterium dentium ATCC 27679] Length = 740 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +++ L+ R AE+E +M+E Y L + + + + + + E + Sbjct: 683 ERKLAKLEERKAELESQMAEHD-PSDYEGLGKINGQLQAVADESESLEMEWMELSEQLE 740 >gi|258445569|ref|ZP_05693751.1| bacteriophage capsid protein [Staphylococcus aureus A6300] gi|257855616|gb|EEV78549.1| bacteriophage capsid protein [Staphylococcus aureus A6300] Length = 402 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 25/206 (12%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + DH + + + + + L +D L + + Sbjct: 91 EAYQSLNDHEKMVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|117921830|ref|YP_871022.1| ABC transporter-like protein [Shewanella sp. ANA-3] gi|117614162|gb|ABK49616.1| ABC transporter related [Shewanella sp. ANA-3] Length = 637 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 10 CDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQDLH 63 L R AE+E +++S D KLT + + + + + + ++E + Sbjct: 572 QKLSERLAELEHLLADSELYDQDNKAKLTSVLSERTSLTQTLEESEMQWLELQEEIDAME 631 Query: 64 TVI 66 + Sbjct: 632 LEL 634 >gi|325130163|gb|EGC52941.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis OX99.30304] Length = 636 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|254670733|emb|CBA06948.1| ABC transporter, ATP-binding protein [Neisseria meningitidis alpha153] Length = 636 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|229818442|ref|ZP_04448723.1| hypothetical protein BIFANG_03749 [Bifidobacterium angulatum DSM 20098] gi|229784312|gb|EEP20426.1| hypothetical protein BIFANG_03749 [Bifidobacterium angulatum DSM 20098] Length = 559 Score = 37.1 bits (84), Expect = 4.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I D RF +I M++ + + L EE + I + +D + + Sbjct: 96 IADKVARFNQIGEEMADPNA--DFDALMEEMGKLQTEIDAANGWD-LDSQLDQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|291001031|ref|XP_002683082.1| hypothetical protein NAEGRDRAFT_45002 [Naegleria gruberi] gi|284096711|gb|EFC50338.1| hypothetical protein NAEGRDRAFT_45002 [Naegleria gruberi] Length = 451 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 32/103 (31%), Gaps = 2/103 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSV-DAYIKLTEEYAAISPIISKISIYDQKKQEEQ-DLHT 64 + I + +R + E +S+ S+ + ++ + I K ++ DL Sbjct: 300 EDIEKINSRIQKREKMLSDDSSIGNLLANYSKNQQELDEITKKYKELEETISVLSGDLGK 359 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + D + + ++ E + K D Sbjct: 360 INQDLSDIKVNAEDLTKKMADTTPLREIKEALVKIRNDIKQMD 402 >gi|220912919|ref|YP_002488228.1| ABC transporter ATP-binding protein [Arthrobacter chlorophenolicus A6] gi|219859797|gb|ACL40139.1| ABC transporter related [Arthrobacter chlorophenolicus A6] Length = 560 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF EI M+ + Y L EE + I +D + + + + Sbjct: 99 KIQRFNEISEEMASPDA--DYDTLLEEMGKLQEAIDAADAWD-LDSQLEQAMDALRCPPA 155 Query: 72 DSE 74 D++ Sbjct: 156 DAD 158 >gi|5051458|emb|CAB44978.1| putative ATP-binding protein [Neisseria meningitidis] gi|325142287|gb|EGC64701.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis 961-5945] gi|325198260|gb|ADY93716.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis G2136] Length = 636 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|294790648|ref|ZP_06755806.1| ABC transporter, ATP-binding protein [Scardovia inopinata F0304] gi|294458545|gb|EFG26898.1| ABC transporter, ATP-binding protein [Scardovia inopinata F0304] Length = 559 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 I RF +I M+ + + L EE + I + +D + + + Sbjct: 95 DIQQKVRRFNQIGEEMANPNA--DFDALMEEMGELQTAIDAANGWD-LESQLSQAMDALQ 151 Query: 68 DHNSDS 73 + D+ Sbjct: 152 CPDPDT 157 >gi|161869934|ref|YP_001599103.1| ABC transporter ATP-binding protein [Neisseria meningitidis 053442] gi|161595487|gb|ABX73147.1| ABC transporter ATP-binding protein [Neisseria meningitidis 053442] Length = 641 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 580 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 633 >gi|325132091|gb|EGC54787.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis M6190] gi|325138024|gb|EGC60597.1| ABC transporter, ATP-binding protein Uup [Neisseria meningitidis ES14902] Length = 636 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|302881995|ref|XP_003039908.1| hypothetical protein NECHADRAFT_85425 [Nectria haematococca mpVI 77-13-4] gi|256720775|gb|EEU34195.1| hypothetical protein NECHADRAFT_85425 [Nectria haematococca mpVI 77-13-4] Length = 751 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 5/67 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPS--VDAYIKLTEEYAAISPIISKISIYDQK-KQEEQDL 62 ++ KN+ AE+E ++S++ +LT++ + IIS +D + D Sbjct: 342 ENKLE--KNKSAELEKKLSDARDEYAKKEAELTKQIQDLQKIISGDRDHDAADHKALDDA 399 Query: 63 HTVIGDH 69 H +I + Sbjct: 400 HQMIAEE 406 >gi|37527154|ref|NP_930498.1| hypothetical protein plu3274 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36786588|emb|CAE15648.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 598 Score = 37.1 bits (84), Expect = 4.3, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 38/133 (28%), Gaps = 7/133 (5%) Query: 8 QICDLKNRFAEIELR-------MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 ++ + R E+ R +S++ Y L+ E ++ I + + Q Sbjct: 351 KLRIINTRLNELGTRRSKSLSFLSDTEVFSKYKILSRELVSLRADIETLERQKAHLHKLQ 410 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 +L T I + + + + + L + D S + Sbjct: 411 ELRTEIRSLSEECSHLQSKIENNVESQNSDQASIFSQIRLYFSEIVDTVISRKALLSVSP 470 Query: 121 GGSEAALFVGDLF 133 F ++ Sbjct: 471 NREGHLQFKAEIL 483 >gi|227543233|ref|ZP_03973282.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181042|gb|EEI62014.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 491 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 24/43 (55%), Gaps = 1/43 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA-ISPIISK 48 ++ DL R + R++ +D Y++L ++Y+ ++ + S+ Sbjct: 376 DRLDDLHERLTALTARIASPAFIDEYVELLDDYSHTLAKVKSE 418 >gi|116873869|ref|YP_850650.1| NLP/P60 family protein [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742747|emb|CAK21871.1| NLP/P60 family protein [Listeria welshimeri serovar 6b str. SLCC5334] Length = 416 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHT 64 K+I D+K++ +++ +S V K E+ ++ Q Q+ +D++ Sbjct: 37 DKKINDIKSKKTDLQSELSS--LVADLDKAQEKAKSLQGDFDKTGKELKQLNQDIKDINE 94 Query: 65 VIGDHNS 71 I + S Sbjct: 95 RIKERES 101 >gi|16077804|ref|NP_388618.1| ABC protein [Bacillus subtilis subsp. subtilis str. 168] gi|221308574|ref|ZP_03590421.1| hypothetical protein Bsubs1_04128 [Bacillus subtilis subsp. subtilis str. 168] gi|221312899|ref|ZP_03594704.1| hypothetical protein BsubsN3_04084 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317823|ref|ZP_03599117.1| hypothetical protein BsubsJ_04038 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322097|ref|ZP_03603391.1| hypothetical protein BsubsS_04129 [Bacillus subtilis subsp. subtilis str. SMY] gi|321314467|ref|YP_004206754.1| putative ABC protein [Bacillus subtilis BSn5] gi|81814847|sp|O06476|YFMR_BACSU RecName: Full=Uncharacterized ABC transporter ATP-binding protein YfmR gi|2116756|dbj|BAA20107.1| YfmR [Bacillus subtilis] gi|2633050|emb|CAB12556.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis subsp. subtilis str. 168] gi|320020741|gb|ADV95727.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis BSn5] Length = 629 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + ++E + + +L E A + +L Sbjct: 569 EDKIAQLEEKHEQLEADIAAAGSDFGKIQELMAEQA------KTAEELEAAMDRWTELSL 622 Query: 65 VIGDHNS 71 +I + S Sbjct: 623 MIEELES 629 >gi|15239256|ref|NP_196204.1| leucine-rich repeat family protein [Arabidopsis thaliana] gi|9759110|dbj|BAB09679.1| unnamed protein product [Arabidopsis thaliana] gi|53850485|gb|AAU95419.1| At5g05850 [Arabidopsis thaliana] gi|55733731|gb|AAV59262.1| At5g05850 [Arabidopsis thaliana] gi|57868144|gb|AAW57410.1| plant intracellular Ras-group-related LRR protein 1 [Arabidopsis thaliana] gi|110737851|dbj|BAF00864.1| hypothetical protein [Arabidopsis thaliana] gi|332003549|gb|AED90932.1| plant intracellular ras group-related LRR 1 [Arabidopsis thaliana] Length = 506 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 8/75 (10%) Query: 5 SHKQICDLKNRFAEIELRMSE--------SPSVDAYIKLTEEYAAISPIISKISIYDQKK 56 H+ + + R EI+ +SE +D K + A+ + Sbjct: 90 DHETVDRARARLREIDASLSESFEEIALSPNDIDVAEKEQKRREAVEQEKIWYKSILKLN 149 Query: 57 QEEQDLHTVIGDHNS 71 + + ++ + Sbjct: 150 ELHESYEKLLKEAEE 164 >gi|121634824|ref|YP_975069.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis FAM18] gi|120866530|emb|CAM10280.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis FAM18] Length = 641 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 580 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 633 >gi|308389211|gb|ADO31531.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis alpha710] Length = 635 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 574 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 627 >gi|289435766|ref|YP_003465638.1| NLP/P60 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172010|emb|CBH28556.1| NLP/P60 family protein [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 411 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI-SIYDQKKQEEQDLHT 64 K+I D+K++ A+++ +S+ V K E+ ++ K Q+ +D++ Sbjct: 37 DKKINDIKSQKADLQSDLSD--LVSDLDKAQEKAKSLQADFDKTGKELKDLNQDIKDINE 94 Query: 65 VIGDHNS 71 I + S Sbjct: 95 RIKERES 101 >gi|207108877|ref|ZP_03243039.1| peptide chain release factor 2 [Helicobacter pylori HPKX_438_CA4C1] Length = 85 Score = 37.1 bits (84), Expect = 4.4, Method: Composition-based stats. Identities = 7/55 (12%), Positives = 15/55 (27%), Gaps = 3/55 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKL---TEEYAAISPIISKISIYDQKKQEEQD 61 +K IE + +K +E ++ ++ E D Sbjct: 27 EKIKQELERIEKEQEDPNFWQDVLKARDTNKEKVRLNRLLETYQKTKDSLDESVD 81 >gi|296876425|ref|ZP_06900477.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 15912] gi|296432715|gb|EFH18510.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 15912] Length = 622 Score = 37.1 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYDQKKQEEQD 61 I ++NR AEIE+ M+E+ + KL+ + ++ K Y+ E + Sbjct: 568 DIEAIENRIAEIEVEMNENG--SDFGKLSALQKELDQENERLLEKYDRYE-YLSELDE 622 >gi|257428231|ref|ZP_05604629.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus 65-1322] gi|258455561|ref|ZP_05703518.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|282905857|ref|ZP_06313712.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus Btn1260] gi|257275072|gb|EEV06559.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257862249|gb|EEV85020.1| conserved hypothetical protein [Staphylococcus aureus A5937] gi|282331149|gb|EFB60663.1| bacteriophage capsid protein [Staphylococcus aureus subsp. aureus Btn1260] Length = 402 Score = 37.1 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 66/206 (32%), Gaps = 10/206 (4%) Query: 10 CDLKNRFAEIELRMSESP-SVDAYIKLTEEYAAI-------SPIISKISIYDQKK-QEEQ 60 LKN+ E+ + ++ ++ +L E A + + I ++ K ++ Sbjct: 31 QQLKNKNDELSQKATDPNIDMEDIKQLETEKAGLQQRFNIVERQVQDIEEKEKAKVKDTG 90 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + D+ + + + + + L +D L + + Sbjct: 91 EAYQSLNDNEKLVKAKAEFYRHAILPNEFEKPSMEAQRLLHALPTGNDSGGDKLLPKTLS 150 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 + F + R R ++ ++ +S + +DD ++ + +KF + Sbjct: 151 KEIVSEPFAKNQLREKARLTNIKGLEIPRVSYTLDDDDFITDVETAKELKLKGDTVKFTT 210 Query: 181 GVHR-VQRVPATEASGRVHTSAATVA 205 + + T G V Sbjct: 211 NKFKVFAAISDTVIHGSDVDLVNWVE 236 >gi|108712217|gb|ABG00012.1| RuBisCO subunit binding-protein alpha subunit, chloroplast precursor, putative, expressed [Oryza sativa Japonica Group] Length = 479 Score = 37.1 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +S++ S KL E A +S ++ I + + E +D I D Sbjct: 275 DEIQARIAQLKRELSQTDSAYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 334 Query: 70 NS 71 + Sbjct: 335 KN 336 >gi|150015795|ref|YP_001308049.1| HK97 family phage major capsid protein [Clostridium beijerinckii NCIMB 8052] gi|149902260|gb|ABR33093.1| phage major capsid protein, HK97 family [Clostridium beijerinckii NCIMB 8052] Length = 400 Score = 37.1 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 12/98 (12%), Positives = 42/98 (42%), Gaps = 2/98 (2%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 K + ++ +R AE+ + + + + + +E ++ + ++I ++ +E +++ Sbjct: 2 KTLKEIASRKAELRTMLEDPKA--DLVAIEKELRELNEMQNQIETRERLIKEAGEINAGK 59 Query: 67 GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPK 104 ++ I + + V E + LE ++ + Sbjct: 60 AGEKRETFIPGVKKEVVEEREDKYSTLEYRKAFMNYAR 97 >gi|113969085|ref|YP_732878.1| ABC transporter-like protein [Shewanella sp. MR-4] gi|114048771|ref|YP_739321.1| ABC transporter-like protein [Shewanella sp. MR-7] gi|113883769|gb|ABI37821.1| ABC transporter related [Shewanella sp. MR-4] gi|113890213|gb|ABI44264.1| ABC transporter related [Shewanella sp. MR-7] Length = 637 Score = 37.1 bits (84), Expect = 4.5, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 10 CDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQ--D 61 L R AE+E +++S D KLT + + + + + + ++E + Sbjct: 572 QKLSERLAELEHLLADSELYDQDNKAKLTSVLSERTSLTQTLEESEMQWLELQEEIDSME 631 Query: 62 LHTV 65 L + Sbjct: 632 LELM 635 >gi|313232328|emb|CBY09437.1| unnamed protein product [Oikopleura dioica] Length = 1115 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 12/129 (9%), Positives = 38/129 (29%), Gaps = 3/129 (2%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT- 64 ++ + + +E S P + K + + ++ + K+ E + T Sbjct: 273 KRKAEEREKELDSLEKWTSVPPIQAQFKKAQKRIKDYTKVVDSFEQKIKDKKAEIESETV 332 Query: 65 --VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 + + + + ++ + + E + E+ + +D + Sbjct: 333 EGLEREMQRVMDESEEYRVVIKKVVSEKKLYESRRDKDNAAAQDLEDSVTRATRKMNANK 392 Query: 123 SEAALFVGD 131 F D Sbjct: 393 KALNAFKKD 401 >gi|260947746|ref|XP_002618170.1| hypothetical protein CLUG_01629 [Clavispora lusitaniae ATCC 42720] gi|238848042|gb|EEQ37506.1| hypothetical protein CLUG_01629 [Clavispora lusitaniae ATCC 42720] Length = 180 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 2/73 (2%) Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER-KR 284 G GGQ +N ++S V++TH PTGI+V +SQ QNR +A ++L +L +++ + Sbjct: 60 KGGRGPGGQKINKSNSKVQLTHKPTGIVVTCQYSRSQEQNRKKAREILALKLEELQDPEN 119 Query: 285 MANERSANRKLQI 297 RK + Sbjct: 120 SRTAILNKRKSMV 132 >gi|256832163|ref|YP_003160890.1| ABC transporter-like protein [Jonesia denitrificans DSM 20603] gi|256685694|gb|ACV08587.1| ABC transporter related [Jonesia denitrificans DSM 20603] Length = 560 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L E + + + +D + + + Sbjct: 96 IKGKLDRFNEISALMAEPDA--DFDTLLAEMGELQEALDHANAWD-LDNQLEQAMDALRC 152 Query: 69 HNSDSE 74 D++ Sbjct: 153 PPPDAD 158 >gi|295702444|ref|YP_003595519.1| putative ABC transporter ATP-binding protein [Bacillus megaterium DSM 319] gi|294800103|gb|ADF37169.1| putative ABC transporter, ATP-binding protein [Bacillus megaterium DSM 319] Length = 644 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYD 53 + ++ +E +M + + Y KLT+EY + + Y Sbjct: 94 LKKMEKELRTLETKMGDPDIFNDSVQYEKLTKEYDQLQVTFKDLGGYQ 141 >gi|149391059|gb|ABR25547.1| rubisco large subunit-binding protein subunit alpha [Oryza sativa Indica Group] Length = 206 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +++ R A+++ +SE+ S+ KL E A +S ++ I + + E +D I D Sbjct: 3 DEIQARVAQLKKELSETDSIYDTEKLAERIAKLSGGVAVIKVGAATETELEDRQLRIEDA 62 Query: 70 NS 71 + Sbjct: 63 KN 64 >gi|325268693|ref|ZP_08135322.1| mobilization protein [Prevotella multiformis DSM 16608] gi|324988937|gb|EGC20891.1| mobilization protein [Prevotella multiformis DSM 16608] Length = 418 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 12/124 (9%), Positives = 29/124 (23%), Gaps = 6/124 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI-SPIISKISIYDQKKQEEQDLHTVIG 67 + + R E+E M + +E A I +I + + +L + Sbjct: 257 LDKAEKRIEELEREMERQKFLSE-----KEKAEIRKEVILLQDTVRGRDRTIAELKETMQ 311 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127 + + + L + ++ G Sbjct: 312 VYEEERNWIKRFFNGFYQLLNIRLMLRKMNFSDDRIAEMYRTEAPQQGTAKAYSGLYKRE 371 Query: 128 FVGD 131 F + Sbjct: 372 FTEE 375 >gi|218768114|ref|YP_002342626.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis Z2491] gi|5051450|emb|CAB44971.1| putative ATP-binding protein [Neisseria meningitidis] gi|121052122|emb|CAM08438.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis Z2491] gi|319410355|emb|CBY90706.1| putative ABC transporter ATP-binding protein [Neisseria meningitidis WUE 2594] Length = 636 Score = 37.1 bits (84), Expect = 4.6, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|312877421|ref|ZP_07737385.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor lactoaceticus 6A] gi|311795810|gb|EFR12175.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor lactoaceticus 6A] Length = 1350 Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 VFLSHKQICDLKNRFAEIE----LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 +F K++ ++K E+E ++S+ A KL +E + + ++ Y +K + Sbjct: 333 IFKLQKELLNIKEELRELEEQKNKKLSQIN--SASQKLEKERQQLIALEEELEKYKRKIK 390 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + + + +L + ++L + + + EI+ Sbjct: 391 DSVEEGKLLIESIGFQRFSETLDMYLLEQGSLDILKDELSSFLSQVEIALKNYEKLNEIK 450 Query: 118 AGTGGSE 124 G Sbjct: 451 KDLDGLY 457 >gi|254804931|ref|YP_003083152.1| ABC transporter ATP-binding protein [Neisseria meningitidis alpha14] gi|254668473|emb|CBA05763.1| ABC transporter ATP-binding protein [Neisseria meningitidis alpha14] Length = 636 Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALEAEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|77361807|ref|YP_341382.1| ABC transporter ATP-binding protein [Pseudoalteromonas haloplanktis TAC125] gi|76876718|emb|CAI87940.1| putative ABC transporter, ATP-binding protein [Pseudoalteromonas haloplanktis TAC125] Length = 640 Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 5/70 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 KQ+ E+E+ + ++ K A + +++K + K + ++ + Sbjct: 568 EKQLDKYAAELNEVEVALGDNELYSDDNK-----AKLKELLAKQATLTPKLNDIEEALLM 622 Query: 66 IGDHNSDSEI 75 D E Sbjct: 623 ALDEMEQKEQ 632 >gi|226943534|ref|YP_002798607.1| ABC transporter ATP binding protein [Azotobacter vinelandii DJ] gi|226718461|gb|ACO77632.1| ABC transporter, ATP binding component [Azotobacter vinelandii DJ] Length = 639 Score = 37.1 bits (84), Expect = 4.7, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDA-YIKLTEEYAAISPIISKISIYDQKKQEEQDL 62 QI L+ AE++ R+++ + A + + ++ ++ E ++ Sbjct: 584 QIDALEAELAELQERIADPAFYQQPAAQTAPLLARLESLQQELDRLLERWAELEEA 639 >gi|332665930|ref|YP_004448718.1| hypothetical protein Halhy_3997 [Haliscomenobacter hydrossis DSM 1100] gi|332334744|gb|AEE51845.1| hypothetical protein Halhy_3997 [Haliscomenobacter hydrossis DSM 1100] Length = 1111 Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 15/118 (12%), Positives = 40/118 (33%), Gaps = 9/118 (7%) Query: 3 FLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEE-YAAISPIISKISIYDQKKQEEQD 61 + + KQ+ L R E+E + + K EE + +K++ ++ Sbjct: 546 WQTRKQLEKLLERQKELEKQ------IKEAQKAFEENKKNQEQLGETPEELQEKQEMLEE 599 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L + D + + ++ + + LE + +++ + E+ Sbjct: 600 LMESLEDPEMKELMEKIEKLMQEMEKDQA--LEMMEQMKDQNEKRENELERMEELFKQ 655 >gi|258515486|ref|YP_003191708.1| hypothetical protein Dtox_2271 [Desulfotomaculum acetoxidans DSM 771] gi|257779191|gb|ACV63085.1| hypothetical protein Dtox_2271 [Desulfotomaculum acetoxidans DSM 771] Length = 214 Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 43/112 (38%), Gaps = 7/112 (6%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYA----AISPIISKISIYDQKKQEEQDLH 63 ++ + + I +S++ +K T+E A + I I+ + +DL+ Sbjct: 17 KLKAIIDERNNIHTLLSQNDINTDPLK-TKELAIKLHELEQICEVINDLKSYAGDLRDLN 75 Query: 64 TV--IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCI 113 + D +D + + L + + +L N + + + +D+ + Sbjct: 76 EMSLFEDFKTDIDFQRLLKQTADRCNERAVKLYNWLMQKGMLDEEIEDEKDM 127 >gi|213583737|ref|ZP_03365563.1| peptide chain release factor-like protein [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 147 Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 28/64 (43%), Positives = 35/64 (54%) Query: 196 RVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV 255 R H V D I ++IR +T+R+SG GGQHVN TDSAVR TH+ +GI V Sbjct: 83 RPHHGRKNWYVGIGRFSADEHIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISV 142 Query: 256 TSSE 259 Sbjct: 143 KVQS 146 >gi|74190853|dbj|BAE28211.1| unnamed protein product [Mus musculus] Length = 506 Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 61/170 (35%), Gaps = 18/170 (10%) Query: 8 QICDLKNRFA-EIE-------LRMSESPSVDAY-----IKLTEEYAAISPIISKISIYDQ 54 Q+ L N+++ E+E + ++ + D K+T + + + DQ Sbjct: 336 QLESLINKWSLELEDQERHFLQQATQVNAWDRTLIENGEKITSLHREVEKVKLDQKRLDQ 395 Query: 55 ----KKQEEQDLHTVIG-DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDD 109 ++++L ++ S E ++ E+E E L + D Sbjct: 396 ELDFILSQQKELEDLLSPLEESVKEQSGTIYLQHADEEREKTYKLAENIDAQLKRMAQDL 455 Query: 110 KSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGG 159 K I + G ++ + + + ++ + +W + + + + GG Sbjct: 456 KDIIEHLNMAGGPADTSDPLQQICKILNAHMDSLQWVDQSSALAAEEGGG 505 >gi|294497079|ref|YP_003560779.1| putative ABC transporter ATP-binding protein [Bacillus megaterium QM B1551] gi|294347016|gb|ADE67345.1| putative ABC transporter, ATP-binding protein [Bacillus megaterium QM B1551] Length = 644 Score = 37.1 bits (84), Expect = 4.8, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 3/48 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAISPIISKISIYD 53 + ++ +E +M + + Y KLT+EY + + Y Sbjct: 94 LKKMEKELRTLETKMGDPDIFNDSVQYEKLTKEYDQLQVTFKDLGGYQ 141 >gi|149601712|ref|XP_001516761.1| PREDICTED: similar to leucine zipper protein 1, partial [Ornithorhynchus anatinus] Length = 860 Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 17/130 (13%), Positives = 35/130 (26%), Gaps = 7/130 (5%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ-KKQEEQDLH 63 ++ L R E+E K EE + +++ + E + L Sbjct: 8 MRFKVQSLGRRLDELEEAT------KNLQKAEEELLELQDKVTQAEGSNSGLLAEVEALR 61 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 + E A+ ++ ++ E E + L + + LE G Sbjct: 62 KRVLRIEGKDEELQRAEGLCQLLKAKLEEEEGQSRGLRSEMERLQRRMAQLEKLEEAFGR 121 Query: 124 EAALFVGDLF 133 Sbjct: 122 SKNDCTQLCL 131 >gi|327393366|dbj|BAK10788.1| ABC transporter ATP-binding protein Uup [Pantoea ananatis AJ13355] Length = 639 Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 6/59 (10%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ L+ R E++ +MS + + + + ++L ++ Sbjct: 579 QKLEQLEARIGELQAKMSHPDFFSQPHD--KTQPVLDELADVEQQLETAFARWEELESL 635 >gi|145546071|ref|XP_001458719.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124426540|emb|CAK91322.1| unnamed protein product [Paramecium tetraurelia] Length = 248 Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 46/113 (40%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +++ +L+ + ++E + +L++ Y+ I +++ I I ++ Q Q+ ++ Sbjct: 93 KQKVQELQRKVQQLEQQQKNEDFDQNESELSQVYSQIQQLVNTIKILQEEIQNMQEKLSI 152 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRA 118 + + +A+ + L + + + + D K + EI Sbjct: 153 KQHIIDGYDSQLIAKDKELEDQNHYIQDLHNQLEEQTLQMEDKQKFLLDEIST 205 >gi|119472468|ref|ZP_01614567.1| putative orphan protein [Alteromonadales bacterium TW-7] gi|119444905|gb|EAW26204.1| putative orphan protein [Alteromonadales bacterium TW-7] Length = 893 Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 15/133 (11%), Positives = 39/133 (29%), Gaps = 14/133 (10%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPII-----------SKISIYDQKKQ 57 + ++K AE+E +++++ Y + A + + + + Sbjct: 476 LENIK---AELEQQLADAKDWQKYAAAPKRVALLEEVAALTEQECTDPQQRAEQVKMFRT 532 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 +L + D ++ IE+L E E N + + + + Sbjct: 533 RWNELGRLDTDEEKQQGVQFDEHIELLFAPCRSYFAEQEKNRDAAKLQRESIITDMHALS 592 Query: 118 AGTGGSEAALFVG 130 E + Sbjct: 593 TEPTSEEGFDWKQ 605 >gi|78184486|ref|YP_376921.1| ATPase [Synechococcus sp. CC9902] gi|78168780|gb|ABB25877.1| ATPase [Synechococcus sp. CC9902] Length = 862 Score = 36.7 bits (83), Expect = 4.9, Method: Composition-based stats. Identities = 11/71 (15%), Positives = 34/71 (47%), Gaps = 7/71 (9%) Query: 7 KQICDLKNRFAEIE-LRMS-----ESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEE 59 +QI ++ + ++E ++S +S S + ++ E + +S S ++ + Q+K Sbjct: 411 EQIDEIDRKILQLEMEKLSLGRESDSASQERLQRIERELSELSEQQSNLNAQWQQEKGAI 470 Query: 60 QDLHTVIGDHN 70 ++ ++ + Sbjct: 471 DEISSLKEEME 481 >gi|328946151|gb|EGG40296.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1087] Length = 622 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFARLSQLQQELDEQNEKLLEKYERYE 615 >gi|296331832|ref|ZP_06874297.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673444|ref|YP_003865116.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis subsp. spizizenii str. W23] gi|296150910|gb|EFG91794.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305411688|gb|ADM36807.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus subtilis subsp. spizizenii str. W23] Length = 629 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + ++E + + +L E A + +L Sbjct: 569 EDKIAQLEEKHEQLEADIAAAGSDFGKIQELMAEQA------KTAEELEAAMDRWTELSL 622 Query: 65 VIGDHNS 71 +I + S Sbjct: 623 MIEELES 629 >gi|291483186|dbj|BAI84261.1| hypothetical protein BSNT_01256 [Bacillus subtilis subsp. natto BEST195] Length = 629 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 21/67 (31%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRM-SESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + ++E + + +L E A + +L Sbjct: 569 EDKIAQLEEKHEQLEADIAAAGSDFGKIQELMAEQA------KTAEELEAAMDRWTELSL 622 Query: 65 VIGDHNS 71 +I + S Sbjct: 623 MIEELES 629 >gi|317130082|ref|YP_004096364.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] gi|315475030|gb|ADU31633.1| LPXTG-motif cell wall anchor domain protein [Bacillus cellulosilyticus DSM 2522] Length = 786 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 17/140 (12%), Positives = 46/140 (32%), Gaps = 8/140 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQ-------KKQ 57 +++ +L+++ E+ R+ E + + +L + +++ + YD +Q Sbjct: 624 EQKVAELESQIEELNERLQELENNNEIDQLQLMVDELEAELVALSAQYDDVEALVTMLEQ 683 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + L I + +D E + + + E+ L + ++D Sbjct: 684 QVESLKAQIEELMTDEESTSIETGDEKTSDSELENGAKSEEALEVADESDSSNESAGATS 743 Query: 118 AGTGGSEAALFVGDLFRMYE 137 G F Sbjct: 744 DEDKGDRLPDTATSTFNYLL 763 >gi|291001053|ref|XP_002683093.1| predicted protein [Naegleria gruberi] gi|284096722|gb|EFC50349.1| predicted protein [Naegleria gruberi] Length = 1072 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Query: 5 SHKQICDLKNRFAEIELRMS--ESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQD 61 + ++I DL+N E++ +M+ ES + +L +E + KI + ++E+Q Sbjct: 728 TRQKISDLENEIEELKQKMTAKESSLKEEIDQLQKEINSWRETDQKIKSELKKIEKEKQS 787 Query: 62 LHTVIGDHN 70 L VI N Sbjct: 788 LEQVIKKEN 796 >gi|225432464|ref|XP_002277269.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 893 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 15/83 (18%) Query: 3 FLSHKQ----ICDLKNRFAEIELRMSESPSVDA------YIKLTEEYAAISPI---ISKI 49 ++ + I L R E++ ++ E +L ++ A + + ++ Sbjct: 534 WVPQDKKDEMILKLVPRVRELQNQLQEWTEWANQKVMQAARRLGKDKAELKTLRQEKEEV 593 Query: 50 SIYDQKKQEEQD--LHTVIGDHN 70 ++KQ +D + N Sbjct: 594 ERLKKEKQTLEDNTAKKLSEMEN 616 >gi|118572263|sp|Q07DY4|CTTB2_COLGU RecName: Full=Cortactin-binding protein 2; Short=CortBP2 gi|115520980|gb|ABJ08858.1| cortactin-binding protein 2 [Colobus guereza] Length = 1663 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ E + + K+ EE + I++K+ Sbjct: 141 MEKLQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDIMAKLE 200 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 +K E ++ + + +E+ + ++ + E +L Sbjct: 201 EEKKKTNELEE--ELSAEKRRSTEMEAQMEKQLSEFDTEREQL 241 >gi|114615619|ref|XP_519331.2| PREDICTED: cortactin-binding protein 2 [Pan troglodytes] Length = 1665 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ E + + K+ EE + I++K+ Sbjct: 141 MEKLQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDIMAKLE 200 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 +K E ++ + + +E+ + ++ + E +L Sbjct: 201 EEKKKTNELEE--ELSAEKRRSTEMEAQMEKQLSEFDTEREQL 241 >gi|281183262|ref|NP_001162186.1| cortactin-binding protein 2 [Papio anubis] gi|158512456|sp|A0M8S4|CTTB2_PAPAN RecName: Full=Cortactin-binding protein 2; Short=CortBP2 gi|38322669|gb|AAR16228.1| cortactin-binding protein 2 [Papio anubis] Length = 1663 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ E + + K+ EE + I++K+ Sbjct: 141 MEKLQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDIMAKLE 200 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 +K E ++ + + +E+ + ++ + E +L Sbjct: 201 EEKKKTNELEE--ELSAEKRRSTEMEAQMEKQLSEFDTEREQL 241 >gi|274319891|ref|NP_001162096.1| cortactin-binding protein 2 [Macaca mulatta] gi|68270991|gb|AAY89008.1| cortactin-binding protein 2 [Macaca mulatta] Length = 1661 Score = 36.7 bits (83), Expect = 5.0, Method: Composition-based stats. Identities = 14/103 (13%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ E + + K+ EE + I++K+ Sbjct: 141 MEKLQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDIMAKLE 200 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 +K E ++ + + +E+ + ++ + E +L Sbjct: 201 EEKKKTNELEE--ELSAEKRRSTEMEAQMEKQLSEFDTEREQL 241 >gi|327474159|gb|EGF19569.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK408] Length = 622 Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFARLSQLQQELDEQNEKLLEKYERYE 615 >gi|255548630|ref|XP_002515371.1| sensor histidine kinase, putative [Ricinus communis] gi|223545315|gb|EEF46820.1| sensor histidine kinase, putative [Ricinus communis] Length = 930 Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 18/219 (8%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R ++E + S + E I + I +++ ++L ++ ++ Sbjct: 171 KQRTMDLEKLLEAS--------IQREQVLIEKLQESIKDLERQSSPVEELSQILKRADNF 222 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDL 132 V+ + + N+ + D +EI +G G E+ F Sbjct: 223 LHFILQNAPVVMGHQDKELRYRFIYNHFPRLGEEDILGKTDMEIFSGAGVKESQDFK--- 279 Query: 133 FRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATE 192 R + + + + + G K I VFS+ G++ + + Sbjct: 280 -----REVLEKGLPAKREITFETELFGSK--TFLIYVEPVFSKSGVTIGINYMGMDVTDQ 332 Query: 193 ASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASG 231 R + + + A+ I +TMRA Sbjct: 333 VRKREKMAKLREEIAVQKAKETELNKTIHITEETMRAKQ 371 >gi|312792498|ref|YP_004025421.1| chromosome segregation atpase-like protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179638|gb|ADQ39808.1| chromosome segregation ATPase-like protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 1350 Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 17/127 (13%), Positives = 48/127 (37%), Gaps = 6/127 (4%) Query: 2 VFLSHKQICDLKNRFAEIE----LRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 +F K++ ++K E+E ++S+ A KL +E + + ++ Y +K + Sbjct: 333 IFKLQKELLNIKEELRELEEQKNKKLSQIN--SASQKLEKERQQLIALEEELEKYKRKIK 390 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIR 117 + + ++ + + + +L + ++L + + + EI+ Sbjct: 391 DSVEEGKLLIESIGFQRFSETLDMYLLEQGSLDILKDELSSFLSQVEIALKNYEKLNEIK 450 Query: 118 AGTGGSE 124 G Sbjct: 451 KDLDGLY 457 >gi|154497035|ref|ZP_02035731.1| hypothetical protein BACCAP_01328 [Bacteroides capillosus ATCC 29799] gi|150273434|gb|EDN00562.1| hypothetical protein BACCAP_01328 [Bacteroides capillosus ATCC 29799] Length = 418 Score = 36.7 bits (83), Expect = 5.1, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEE----YAAISPIISKISIYDQKKQEEQD 61 +Q+ L +I +S + + KL++E A++ ++ + Q + + + Sbjct: 98 RQQLNTLSQELEQINYSLSHTDDLSDNAKLSQEILTQIASLRSSVAS-RDFTQLEDDTME 156 Query: 62 LHTVI 66 L T++ Sbjct: 157 LRTLV 161 >gi|327470123|gb|EGF15587.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK330] Length = 622 Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFARLSQLQQELDEQNEKLLEKYERYE 615 >gi|322389620|ref|ZP_08063168.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 903] gi|321143619|gb|EFX39049.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus parasanguinis ATCC 903] Length = 622 Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYDQKKQEEQD 61 I ++NR AEIE+ M+E+ + KL+ + ++ K Y+ E + Sbjct: 568 DIEAIENRIAEIEVEMNENG--SDFGKLSALQKELDQENERLLEKYDRYE-YLSELDE 622 >gi|255551557|ref|XP_002516824.1| conserved hypothetical protein [Ricinus communis] gi|223543912|gb|EEF45438.1| conserved hypothetical protein [Ricinus communis] Length = 894 Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 8/72 (11%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 3 FLSHKQICDLKNRF----AEIELRMSESPSVDA------YIKLTEEYAAISPIISKISIY 52 ++ + ++ + E++ ++ E +L+++ A + + + Sbjct: 538 WVPRDKKDEMIMKLVPRARELQNQLQEWTEWANQKVMQAARRLSKDKAELKSLRQEKEEV 597 Query: 53 DQKKQEEQDLHT 64 ++ K+E+Q L Sbjct: 598 ERLKKEKQTLEE 609 >gi|308446889|ref|XP_003087284.1| hypothetical protein CRE_20178 [Caenorhabditis remanei] gi|308257959|gb|EFP01912.1| hypothetical protein CRE_20178 [Caenorhabditis remanei] Length = 734 Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYD---QKKQEEQDLHT 64 I +RF EI M+E + + L E + I +D Q +Q L T Sbjct: 123 IKAKVDRFNEISALMAEPDA--DFDALLAEMGTLQEEIDAADGWDLDNQLEQAMDALRT 179 >gi|17532007|ref|NP_495360.1| hypothetical protein C18H9.3 [Caenorhabditis elegans] gi|722383|gb|AAC46688.1| Hypothetical protein C18H9.3 [Caenorhabditis elegans] Length = 918 Score = 36.7 bits (83), Expect = 5.2, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 2/73 (2%) Query: 12 LKNRFAEIELRMSES--PSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 L+ R EIE R +ES KL +E I + + D++K+E ++ + + Sbjct: 541 LQKRAEEIEKREAESKREEAARLQKLEQEAREIEERKAALEAEDRRKREIEEYNRMCEKK 600 Query: 70 NSDSEIRDLAQIE 82 ++ ++ A Sbjct: 601 KNEIIAKEAADRM 613 >gi|226329252|ref|ZP_03804770.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198] gi|225202438|gb|EEG84792.1| hypothetical protein PROPEN_03155 [Proteus penneri ATCC 35198] Length = 548 Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 31/87 (35%), Gaps = 3/87 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + NR E+ ++ + + KL +E + II + + + + Sbjct: 90 LKNALNRLDEVYAAYADPDA--DFDKLAKEQGQLEAIIQSHDG-HNLENQLERAAEALRL 146 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELEN 95 D++I L+ E + LE Sbjct: 147 PEWDAKIEKLSGGERRRVAICRLLLEK 173 >gi|269926323|ref|YP_003322946.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798] gi|269789983|gb|ACZ42124.1| ATP-dependent chaperone ClpB [Thermobaculum terrenum ATCC BAA-798] Length = 867 Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 46/133 (34%), Gaps = 7/133 (5%) Query: 9 ICDLKNRFAEIE------LRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQD 61 + +L+ R ++E + ++ S + L +E A + + ++++K Q+ Sbjct: 412 LDELERRILQLEIEREALKKETDEASKERLANLEKELADLKEKREALRMQWEREKSLLQE 471 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTG 121 +++V + + A+ + + N K+ ++ + E R Sbjct: 472 INSVKESIDRVKHEIEQAERNYDYNRAAQLKYSDLTNLERRLKELEEQLARTSENRMVQE 531 Query: 122 GSEAALFVGDLFR 134 + R Sbjct: 532 EVTEEDIAEVVSR 544 >gi|303272845|ref|XP_003055784.1| predicted protein [Micromonas pusilla CCMP1545] gi|226463758|gb|EEH61036.1| predicted protein [Micromonas pusilla CCMP1545] Length = 590 Score = 36.7 bits (83), Expect = 5.3, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 31/62 (50%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ R A+++ ++E+ S+ KL+E A +S ++ I + + E +D I D Sbjct: 380 DEIDIRVAQLKQELAETDSIYDTQKLSERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 439 Query: 70 NS 71 + Sbjct: 440 KN 441 >gi|256086971|ref|XP_002579655.1| myosin heavy chain [Schistosoma mansoni] gi|238665123|emb|CAZ35894.1| myosin heavy chain, putative [Schistosoma mansoni] Length = 1591 Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 D++ R E+E R+++ D LTE +S + ++ K++ +DL + + Sbjct: 891 DMEQRIKELEERLADEE--DQAANLTEVKKKMS------AEIEELKKDVEDLESSLQKAE 942 Query: 71 SDSEIRDLAQIEVLAIEKEIREL 93 + + +D + + + E+ Sbjct: 943 QEKQTKDNQIRTLQSEMAQQDEM 965 >gi|219111103|ref|XP_002177303.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217411838|gb|EEC51766.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 491 Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 1/73 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 A ++ +D+ +R SG GGQ N T + V + H PT + V +S QNR Sbjct: 380 YTARELPELNEDDLTETFVRGSGPGGQKTNKTSNKVALLHGPTQLRVECQDTRSLQQNRK 439 Query: 268 RAMKVLRARLYDV 280 A K LRA+L + Sbjct: 440 IARKRLRAKLDEF 452 >gi|149193952|ref|ZP_01871050.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2] gi|149135905|gb|EDM24383.1| hypothetical protein CMTB2_02668 [Caminibacter mediatlanticus TB-2] Length = 908 Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 1/79 (1%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 + + + + + + ++EL + +K +E ++ I ++ + Sbjct: 627 LKMIKNNKFKNSSRKIEKVELLKILDSFWNEKVKKLKEIKILTDEIIHYQKMCAILED-E 685 Query: 61 DLHTVIGDHNSDSEIRDLA 79 DL + D + Sbjct: 686 DLKELEKDLKEIKDRAKCP 704 >gi|197117086|ref|YP_002137513.1| ABC transporter ATP-binding protein [Geobacter bemidjiensis Bem] gi|197086446|gb|ACH37717.1| ABC transporter, ATP-binding protein [Geobacter bemidjiensis Bem] Length = 648 Score = 36.7 bits (83), Expect = 5.4, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 4/54 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAI-SPIISKISIYDQK 55 ++I + AE+E M+ E +A + I S ++ Sbjct: 595 EQKIAVKEGELAELEQAMAAPDFFSDHEAARLAGERHAQLTEEIASLYQAWESA 648 >gi|327460440|gb|EGF06777.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1057] Length = 622 Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFARLSQLQQELDEQNEKLLEKYERYE 615 >gi|11498824|ref|NP_070053.1| hypothetical protein AF1225 [Archaeoglobus fulgidus DSM 4304] gi|24638391|sp|O29043|Y1225_ARCFU RecName: Full=Uncharacterized protein AF_1225; Flags: Precursor gi|2649363|gb|AAB90025.1| predicted coding region AF_1225 [Archaeoglobus fulgidus DSM 4304] Length = 212 Score = 36.7 bits (83), Expect = 5.5, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDL 62 +S +QI LK++ +++ + + K E + + + +KK + +L Sbjct: 116 ISQEQIETLKSQLEDLQNKAKMLGIQNELQKQQIE--ELQKKLERAKTELQKKKSDLDEL 173 Query: 63 HTVIGDHN 70 I + N Sbjct: 174 EEKIRELN 181 >gi|324558223|gb|ADY49829.1| Peptide chain release factor 1 [Ascaris suum] Length = 51 Score = 36.7 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%) Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQH 263 +P ++I+TMRASG GGQ+VN +AVR+TH +GI V E+ QH Sbjct: 1 MPSNSVKIETMRASGPGGQNVNKRSTAVRVTHKSSGISVHCMDERFQH 48 >gi|311067223|ref|YP_003972146.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus atrophaeus 1942] gi|310867740|gb|ADP31215.1| putative ABC protein involved in RecA-independent precise excision of transposons [Bacillus atrophaeus 1942] Length = 629 Score = 36.7 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 8/66 (12%), Positives = 19/66 (28%), Gaps = 7/66 (10%) Query: 6 HKQICDLKNRFAEIELRMS-ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + ++E ++ L E A + +L Sbjct: 569 EDKIAKLEEKHEQLEAEIAGAGSDFGKIQDLMAEQA------KTAEELEAAMDRWTELSL 622 Query: 65 VIGDHN 70 +I + Sbjct: 623 MIEELE 628 >gi|254443205|ref|ZP_05056681.1| ABC transporter, ATP-binding protein [Verrucomicrobiae bacterium DG1235] gi|198257513|gb|EDY81821.1| ABC transporter, ATP-binding protein [Verrucomicrobiae bacterium DG1235] Length = 644 Score = 36.7 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I DL+++ +E E +M++ K ++ YD K + + + + D Sbjct: 586 IADLESQQSEYEKQMADPDFYKDPKKSQ----------EVLTTYDDNKAKIEAAYELWSD 635 Query: 69 HNS 71 + Sbjct: 636 LSD 638 >gi|84995674|ref|XP_952559.1| DNA repair protein rad50 [Theileria annulata strain Ankara] gi|65302720|emb|CAI74827.1| DNA repair protein rad50, putative [Theileria annulata] Length = 1139 Score = 36.7 bits (83), Expect = 5.6, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 64/183 (34%), Gaps = 5/183 (2%) Query: 9 ICDLKNRFAEIELRMSESPSVD---AYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 + + K+RF ++EL MS + Y K+T E +++S I+ ++ E++ + Sbjct: 846 LQESKSRFEKLELEMSGKDVKEIKADYDKITNECSSLSHKIATMNGM--LISREENAAKL 903 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 +SDS R +Q IE + + + LE S Sbjct: 904 SEMLSSDSFSRAQSQYMETYIELKSHIVAKMDLEKYYKYLESSLHNYHLEKINNINSSLK 963 Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185 ++ + Y + ++ L N + + + + + S +RV Sbjct: 964 RIWREVYTGTHIDYIQSEEINMDFLDILVNTRFICCLVQSKVDKDVSPTEISSHSYSYRV 1023 Query: 186 QRV 188 V Sbjct: 1024 VMV 1026 >gi|319400634|gb|EFV88859.1| femAB family protein [Staphylococcus epidermidis FRI909] Length = 416 Score = 36.7 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 6/115 (5%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 ++E +++E + + + + ++ I +KI ++ K + +L S+ E Sbjct: 244 QDLEAQLAEKEKLQSKKQDKKTLNKLNDIENKIKKTNELKSDLTEL------EKSEPEGI 297 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 L+ ++ + L + + + A G+ F G Sbjct: 298 YLSGALLMFAGNKSYYLYGASSNDYRDFLPNHHMQFEMMKYAREHGATTYDFGGT 352 >gi|242243936|ref|ZP_04798379.1| peptidoglycan pentaglycine interpeptide biosynthesis protein FmhB [Staphylococcus epidermidis W23144] gi|242232569|gb|EES34881.1| peptidoglycan pentaglycine interpeptide biosynthesis protein FmhB [Staphylococcus epidermidis W23144] Length = 416 Score = 36.7 bits (83), Expect = 5.7, Method: Composition-based stats. Identities = 15/115 (13%), Positives = 40/115 (34%), Gaps = 6/115 (5%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIR 76 ++E +++E + + + + ++ I +KI ++ K + +L S+ E Sbjct: 244 QDLEAQLAEKEKLQSKKQDKKTLNKLNDIENKIKKTNELKSDLTEL------EKSEPEGI 297 Query: 77 DLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGD 131 L+ ++ + L + + + A G+ F G Sbjct: 298 YLSGALLMFAGNKSYYLYGASSNDYRDFLPNHHMQFEMMKYAREHGATTYDFGGT 352 >gi|149194939|ref|ZP_01872032.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2] gi|149134860|gb|EDM23343.1| seryl-tRNA synthetase [Caminibacter mediatlanticus TB-2] Length = 415 Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 +I +LK + + + + K E +S I +IS + K +E +D Sbjct: 44 KIEELKAKRNTLSKEIGK-NIKTNPQKAEELKKEVSNIKEEISNLENKLKEIED 96 >gi|147679214|ref|YP_001213429.1| hypothetical protein PTH_2879 [Pelotomaculum thermopropionicum SI] gi|146275311|dbj|BAF61060.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 238 Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 41/135 (30%), Gaps = 5/135 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D+ R +I ++ V +L ++ A I + + K E ++ + Sbjct: 71 ADIAKRKEQI---LASPEEVQKRQELEKKLAEYEEIKEQYKWANAKYDEL--INENMEKI 125 Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129 ++ Q + ++ +L I ++ + E + + Sbjct: 126 RKETLELRKQQGRFIPLDFSDEKLNKGIPQDIINAHELTVNTAQNERKIRGELDNQQKWA 185 Query: 130 GDLFRMYERYAALRK 144 D R A RK Sbjct: 186 EDTARSEFMCWAWRK 200 >gi|18313677|ref|NP_560344.1| purine NTPase [Pyrobaculum aerophilum str. IM2] gi|18161228|gb|AAL64526.1| purine NTPase, probable [Pyrobaculum aerophilum str. IM2] Length = 702 Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 8 QICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPI-ISKISIYDQKKQEEQDLHTV 65 + L+ R AE+E ++ E + + Y++ Y + +S + +++ ++L Sbjct: 198 KTESLRQRLAELEKKLGELAGVKEKYLEAERRYLKLKEQYVSLAKEREGLEKKFEELAQA 257 Query: 66 IGDHNSD 72 + D Sbjct: 258 AIEAERD 264 >gi|300113831|ref|YP_003760406.1| ABC transporter-like protein [Nitrosococcus watsonii C-113] gi|299539768|gb|ADJ28085.1| ABC transporter related protein [Nitrosococcus watsonii C-113] Length = 598 Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 24/58 (41%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 K+I + + R+ + + +LT YA + +K+ Q+ +E + L Sbjct: 540 EKKISKAEQALETFQERLHDPEIMSDSERLTALYAQLQESRNKVDQLYQRWEELESLR 597 >gi|139439002|ref|ZP_01772462.1| Hypothetical protein COLAER_01468 [Collinsella aerofaciens ATCC 25986] gi|133775713|gb|EBA39533.1| Hypothetical protein COLAER_01468 [Collinsella aerofaciens ATCC 25986] Length = 638 Score = 36.7 bits (83), Expect = 5.8, Method: Composition-based stats. Identities = 35/311 (11%), Positives = 79/311 (25%), Gaps = 33/311 (10%) Query: 23 MSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDL 78 +++ + + P + Y QE+ + ++ + + + Sbjct: 333 LADGSVWSLTTNDF-----------PTVDPADPYTLTPQEQHIIDKLVSEFVTADHLHRH 381 Query: 79 AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYER 138 N + + +P + D S + + G + F + R R Sbjct: 382 IDFLYSHGSMYKVANGNLLFHGCVPLNEDGTFSSMNCLGTWHAGRDYLDFCDHIARRAWR 441 Query: 139 YAALR--KWKVE-VLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPAT---- 191 W + + G + ++ + + P+ Sbjct: 442 VGDRDALDWMWYLWIGFNSPASGRLVRTFERAYIADKSTWVEPMDPYFTLTKSPSVCDDI 501 Query: 192 --EASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHI 249 E + T ++ + + IR + GG + Sbjct: 502 MREFGVAPMACSPTGHIINGHTPVKTTKGEQPIRAEGKLLVIDGGFCRAYHPKTGIAGYT 561 Query: 250 PTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRTY 309 KS A + R + E R A+R+ + D +IR+ Sbjct: 562 LISSSRGCRLKSHRAFTTVAEALTRNVDIESETNRFDQ---ADRRRMVSDTDTGAKIRS- 617 Query: 310 NFSQGRITDHR 320 +I D R Sbjct: 618 -----QIQDLR 623 >gi|193734231|gb|ACF19884.1| ABC transporter [Kingella kingae] Length = 636 Score = 36.7 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 22/54 (40%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ A++ ++S+ Y K + + I + K+ ++ + Sbjct: 576 DEIAALEAEQADLSAQLSDPEIFKDYEKAGSLQSRVEEIEMLLLEKLERWEILE 629 >gi|15226314|ref|NP_180367.1| CPN60A (CHAPERONIN-60ALPHA); ATP binding / protein binding [Arabidopsis thaliana] gi|2506276|sp|P21238|RUBA_ARATH RecName: Full=RuBisCO large subunit-binding protein subunit alpha, chloroplastic; AltName: Full=60 kDa chaperonin subunit alpha; AltName: Full=CPN-60 alpha; Flags: Precursor gi|1223910|gb|AAA92061.1| chaperonin-60 alpha subunit [Arabidopsis thaliana] gi|4510416|gb|AAD21502.1| putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] gi|27311671|gb|AAO00801.1| putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] gi|31711734|gb|AAP68223.1| At2g28000 [Arabidopsis thaliana] gi|330252974|gb|AEC08068.1| chaperonin-60alpha [Arabidopsis thaliana] Length = 586 Score = 36.7 bits (83), Expect = 5.9, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ + E+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|312866722|ref|ZP_07726936.1| ABC transporter, ATP-binding protein [Streptococcus parasanguinis F0405] gi|311097803|gb|EFQ56033.1| ABC transporter, ATP-binding protein [Streptococcus parasanguinis F0405] Length = 622 Score = 36.7 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 7/58 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYDQKKQEEQD 61 I ++NR AEIE+ M+E+ + KL+ + ++ K Y+ E + Sbjct: 568 DIEAIENRIAEIEVEMNENG--SDFGKLSALQKELDQENERLLEKYDRYE-YLSELDE 622 >gi|24372474|ref|NP_716516.1| ABC transporter, ATP-binding protein [Shewanella oneidensis MR-1] gi|24346463|gb|AAN53961.1|AE015533_12 ABC transporter, ATP-binding protein [Shewanella oneidensis MR-1] Length = 637 Score = 36.7 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 25/64 (39%), Gaps = 8/64 (12%) Query: 10 CDLKNRFAEIELRMSESP--SVDAYIKLTEEYAAISPIISKISI----YDQKKQEEQ--D 61 L R AE+E +++ D KLT + + + + + + ++E + Sbjct: 572 QKLSERLAELEHLLADGELYDQDNKAKLTSVLSERTSLTQTLEESEMQWLELQEEIDTME 631 Query: 62 LHTV 65 L + Sbjct: 632 LELM 635 >gi|315641324|ref|ZP_07896400.1| ABC superfamily ATP binding cassette transporter, ABC protein [Enterococcus italicus DSM 15952] gi|315482897|gb|EFU73417.1| ABC superfamily ATP binding cassette transporter, ABC protein [Enterococcus italicus DSM 15952] Length = 645 Score = 36.7 bits (83), Expect = 6.0, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Query: 8 QICDLKNRFAEIE-------LRMSESPSVDAYIKLTEEYAAISPIISK----ISIYDQKK 56 ++ ++N+ A++E +M++ +D +++L + + + ++Q+ Sbjct: 578 KVEQIENQLAKLEDDIANYQTQMADPDILDDHVQLQKLNQQLEEAQEAQMTLLEEWEQES 637 Query: 57 QEEQDLHT 64 + L Sbjct: 638 LILESLEE 645 >gi|332797961|ref|YP_004459461.1| homologous recombination repair protein Rad50 [Acidianus hospitalis W1] gi|332695696|gb|AEE95163.1| Rad50, homologous recombination repair enzyme [Acidianus hospitalis W1] Length = 863 Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAA-ISPIISKISIYDQKKQEEQD 61 Q+ L+ E E +++ S++ K EE I + Y+ K D Sbjct: 302 KDQLNTLEKEIEEYEQNLAKKNSLEDDAKRYEELKERKEKIEEAYNEYNSLKSLLND 358 >gi|321456872|gb|EFX67970.1| hypothetical protein DAPPUDRAFT_301731 [Daphnia pulex] Length = 449 Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 10/117 (8%), Positives = 39/117 (33%), Gaps = 2/117 (1%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEY--AAISPIISKISIYDQKKQEEQDLHTV 65 ++ +K + +++ M + +L+++ + + + +++++ D+ T Sbjct: 293 KLKQIKEQIRDLKREMKNPSEISQDQELSKKRKISDSEEDNEILKDFHEQQKKYADIKTT 352 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 +D E L ++ + + + D + L+ Sbjct: 353 RRGKGTDREAETLNFLKKFQSKLSQTRTTKGGVDDIDDVNDDAWLNHTLKFEDKNPS 409 >gi|118572275|sp|Q09YG9|CTTB2_SAIBB RecName: Full=Cortactin-binding protein 2; Short=CortBP2 gi|114573528|gb|ABI75311.1| cortactin-binding protein 2 [Saimiri boliviensis boliviensis] Length = 1659 Score = 36.7 bits (83), Expect = 6.1, Method: Composition-based stats. Identities = 13/103 (12%), Positives = 39/103 (37%), Gaps = 15/103 (14%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYI-------------KLTEEYAAISPIISKIS 50 + Q+ L+ ++ R+ E + + K+ EE + +++K+ Sbjct: 141 MEKLQLQALEQEHKKLAARLEEERGKNKQVVLMLVKECKQLSGKVIEEAQKLEDVMAKLE 200 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93 +K E ++ + + +E+ + ++ + E +L Sbjct: 201 EEKKKTNELEE--ELSAEKQRSTEMEAQMEKQLSEFDTEREQL 241 >gi|226493235|ref|NP_001148093.1| LOC100281701 [Zea mays] gi|195615742|gb|ACG29701.1| ruBisCO large subunit-binding protein subunit alpha [Zea mays] Length = 584 Score = 36.7 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D++ R A+++ +S++ S KL E A +S ++ + + + E +D I D Sbjct: 385 DDIQARIAQLKRELSQTDSTYDSEKLAERIAKLSGGVAVVKVGASTEAELEDRKLRIEDA 444 Query: 70 NS 71 + Sbjct: 445 KN 446 >gi|18860017|ref|NP_572902.1| Ndc80 [Drosophila melanogaster] gi|7292901|gb|AAF48292.1| Ndc80 [Drosophila melanogaster] gi|16769462|gb|AAL28950.1| LD33040p [Drosophila melanogaster] Length = 675 Score = 36.7 bits (83), Expect = 6.2, Method: Composition-based stats. Identities = 15/113 (13%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 9 ICDLKNRFAEIELRMSES---PSVDAYIKLTEEYAAI--------SPIISKISIYDQKKQ 57 I DLK + ++E ++ + ++ +LT+E+ + +I K+ +Y+Q Sbjct: 308 IGDLKTKLQQLENKLHDPSEDNKLNKLERLTKEHDQLAQQLAASEEELIKKLKLYEQLSA 367 Query: 58 EEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + ++ + + + + A ++++EL+ + + + + + Sbjct: 368 QVEEKQSNLRQQMKYEKRLEQAVNRQKFSAQQLKELQMKCDDMENYSKAYERQ 420 >gi|327274859|ref|XP_003222193.1| PREDICTED: hypothetical protein LOC100566687 [Anolis carolinensis] Length = 2523 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 29/198 (14%), Positives = 61/198 (30%), Gaps = 15/198 (7%) Query: 6 HKQICDLKNRFA----EIELRMSES--PSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 Q+ ++ FA E+E++ + +V + L + + E+ Sbjct: 6 EDQMKRIEALFADQTRELEMKFDQKIRDTVSKFESL--IMQEKQQTMEMFETLKKDTSEQ 63 Query: 60 QDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 L T+ + + +D Q E EI + I + E Sbjct: 64 --LQTLCQEQKDYIKQQDKLQREKEIKLSEIEKQLIYIKDAQRRNNFILKNWPESERNER 121 Query: 120 TGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFE 179 G ++ + +R ++ W + + GG + + V K E Sbjct: 122 NG-----NLAEEILKWLQRVTPMQNWTEMDIQRAHRLPGGRSKAMPRDIIVKVTHYKKKE 176 Query: 180 SGVHRVQRVPATEASGRV 197 + +++ P SG V Sbjct: 177 QLMAILRKEPERLRSGGV 194 >gi|298674540|ref|YP_003726290.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303] gi|298287528|gb|ADI73494.1| ATP-dependent chaperone ClpB [Methanohalobium evestigatum Z-7303] Length = 880 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 17/119 (14%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI-----------ISKISIYDQKK 56 +I L+ ++ ++ S + L +E + I IS K Sbjct: 420 KITQLEIEREALKKE-TDPASKERLESLEKELSNIREQSKTLREQWQKEKEIISELRSFK 478 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 ++ +D T + +D++ ++++ + R+ E + L +D + + E Sbjct: 479 EQIEDTKTQLERAENDNDFELASRLKYGTLIPLQRQYEEKEEELHQMQDEMLLREEVDE 537 >gi|20162544|ref|NP_619716.1| polyprotein [Maize chlorotic dwarf virus] gi|2160664|gb|AAB58882.1| polyprotein [Maize chlorotic dwarf virus] Length = 3443 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 13/140 (9%), Positives = 46/140 (32%), Gaps = 3/140 (2%) Query: 7 KQICDLKNRFAEIEL---RMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +I ++++ E+E S +A +L + I I + + + ++ +D Sbjct: 603 DRIRPIESKLKELEKIKPDAGGSKDSEAMRQLVQAIKDIKLIKQAMMELNDRIKDLEDSK 662 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGS 123 D D + + + ++ E + + +++ E + + Sbjct: 663 QHQEDSKPDDDTAGEQKPIPKINKIRVKAKRVEKQSGTNIVNNEIEQAFQDEEKRTVDPN 722 Query: 124 EAALFVGDLFRMYERYAALR 143 + ++ + + + Sbjct: 723 ISDMYNAIKSEYLVKSFSWK 742 >gi|269123013|ref|YP_003305590.1| YadA domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314339|gb|ACZ00713.1| YadA domain protein [Streptobacillus moniliformis DSM 12112] Length = 2092 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 6/53 (11%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 9 ICDLKNRFAEIELRM-SESPSVDAYI-KLTEEYAAISPIISKISIYDQKKQEE 59 + + + E ++ +++ ++ L++E + IS I + + Sbjct: 1930 LDGINKKLEEQNNKLIAQNNKLNEKRGDLSKELKELKDKISVIEKIKMNEDDL 1982 >gi|237733586|ref|ZP_04564067.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229383419|gb|EEO33510.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 584 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 23/153 (15%), Positives = 53/153 (34%), Gaps = 15/153 (9%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD---- 61 +I L R E+ ++ +++ Y+ LT++ AA+ +++I Y + + +D Sbjct: 335 DDKINVLGQRMDELLDFLNSHGALEEYVALTKQLAALQNELNRIHEYQRILKTYKDTVLD 394 Query: 62 --LHTVIGDHN-----SDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 + +I D D + + ++ ++ L Sbjct: 395 IKANLIIQDKETQTYLDDEAEYLSELKNKYWTFAKRFYPKKRSGLVIKNNSGENTLRYTL 454 Query: 115 EIRAGTGGSEA----ALFVGDLFRMYERYAALR 143 E R S+ +F D + R + +R Sbjct: 455 EARIEDDSSDGVNEVRMFCFDFLLLICRKSKIR 487 >gi|217077939|ref|YP_002335657.1| 3D domain family [Thermosipho africanus TCF52B] gi|217037794|gb|ACJ76316.1| 3D domain family [Thermosipho africanus TCF52B] Length = 531 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 31/61 (50%), Gaps = 5/61 (8%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQ--KKQEEQDLHT 64 ++I DL+ R ++ ++ S+ + L E A I I S+++ Q K ++ +D+ Sbjct: 201 EKIQDLEERLNDLSFKV---DSISSKENLERELATIKQISSELNFLKQEFKMEDIEDILK 257 Query: 65 V 65 + Sbjct: 258 L 258 >gi|161506963|ref|YP_001576917.1| ABC transporter, ATP-binding protein [Lactobacillus helveticus DPC 4571] gi|160347952|gb|ABX26626.1| ABC transporter, ATP-binding protein [Lactobacillus helveticus DPC 4571] Length = 637 Score = 36.7 bits (83), Expect = 6.3, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++I +L+ + I+ MS + KL P+ ++S ++ + + Sbjct: 576 EQKIEELEEQEQNIQNEMSNPDIASNFDKLG-------PLQEQLSDVQKQLDDANNAWEK 628 Query: 66 IGDHNSDSE 74 + + E Sbjct: 629 AIEEMDNFE 637 >gi|260102465|ref|ZP_05752702.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus helveticus DSM 20075] gi|260083733|gb|EEW67853.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus helveticus DSM 20075] gi|323465918|gb|ADX69605.1| ABC transporter ATPase component [Lactobacillus helveticus H10] gi|328462806|gb|EGF34673.1| ABC transporter, ATP-binding protein [Lactobacillus helveticus MTCC 5463] Length = 637 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 ++I +L+ + I+ MS + KL P+ ++S ++ + + Sbjct: 576 EQKIEELEEQEQNIQNEMSNPDIASNFDKLG-------PLQEQLSDVQKQLDDANNAWEK 628 Query: 66 IGDHNSDSE 74 + + E Sbjct: 629 AIEEMDNFE 637 >gi|300362270|ref|ZP_07058446.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus gasseri JV-V03] gi|300353261|gb|EFJ69133.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus gasseri JV-V03] Length = 643 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+ EI+ M+ ++ KL +S + DQ + ++ + Sbjct: 584 KIEKLEAEEKEIQTEMANPDIAASFEKLGPLQEKLSAVQ---KQLDQANNDWENALDALD 640 Query: 68 DHN 70 + Sbjct: 641 EFE 643 >gi|21554572|gb|AAM63618.1| putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] Length = 586 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ + E+ SV KL E A +S ++ I + + E +D I D Sbjct: 384 DELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 443 Query: 70 NS 71 + Sbjct: 444 KN 445 >gi|1888527|gb|AAC51144.1| ATP-binding cassette transporter [Homo sapiens] Length = 2273 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 23/188 (12%), Positives = 48/188 (25%), Gaps = 31/188 (16%) Query: 182 VHRVQRVPATEASGRVHTSAATVA-------VLPEAAEIDVDIPLEDIRIDTMRASGSGG 234 H+ + G + +A V+ + VD D + SG Sbjct: 1052 HHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLLLKYRSGR 1111 Query: 235 QHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRK 294 + T H I + + + +K + R + RK Sbjct: 1112 TIIMPTHHMDEADHQGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYLTLVRKMKNIQSQRK 1171 Query: 295 LQIGSGDRSERIRTYNFSQGRITDHRINLTLY--------KLEYVLQGYIDDIINPLLTA 346 G+ S + + E VL G ++++++ +L Sbjct: 1172 GSEGTCSCSSK----------------GFSTTCPAHVDDLTPEQVLDGDVNELMDVVLHH 1215 Query: 347 HQAKMIGS 354 + Sbjct: 1216 VPEAKLVE 1223 >gi|116629073|ref|YP_814245.1| ABC transporter ATPase [Lactobacillus gasseri ATCC 33323] gi|311111137|ref|ZP_07712534.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri MV-22] gi|116094655|gb|ABJ59807.1| ATPase component of ABC transporter with duplicated ATPase domain [Lactobacillus gasseri ATCC 33323] gi|311066291|gb|EFQ46631.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri MV-22] Length = 643 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+ EI+ M+ ++ KL +S + DQ + ++ + Sbjct: 584 KIEKLEAEEKEIQTEMANPDIAASFEKLGPLQEKLSAVQ---KQLDQANNDWENALDALD 640 Query: 68 DHN 70 + Sbjct: 641 EFE 643 >gi|324991234|gb|EGC23168.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK353] Length = 622 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENS--SDFARLSQLQQELDEQNEKLLEKYERYE 615 >gi|217963778|ref|YP_002349456.1| ABC transporter ATP-binding protein [Listeria monocytogenes HCC23] gi|217333048|gb|ACK38842.1| ABC transporter, ATP-binding protein [Listeria monocytogenes HCC23] gi|307571649|emb|CAR84828.1| ABC transporter, ATP-binding protein [Listeria monocytogenes L99] Length = 650 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 6/68 (8%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 6 HKQICDLK-------NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQ 57 +++ +++ + AE+E +++ + K E + + + ++ + Sbjct: 583 KRKLEEVEKSMEATDEKIAELEHQLTNPEVFQDHEKALEITQELDAVKATGEKLMEEWET 642 Query: 58 EEQDLHTV 65 ++L ++ Sbjct: 643 LSEELESM 650 >gi|242021327|ref|XP_002431096.1| Phosphatidylinositol 3-kinase regulatory subunit alpha, putative [Pediculus humanus corporis] gi|212516345|gb|EEB18358.1| Phosphatidylinositol 3-kinase regulatory subunit alpha, putative [Pediculus humanus corporis] Length = 726 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 7/114 (6%) Query: 9 ICDLKNRFAEIELRMSE-----SPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDL 62 I + + AEIE ++ + + + K+++E P + +E+Q+L Sbjct: 432 IEKVAKKLAEIEAQLQDKSRTFQKLKEDFNKISKEIEVKRGPTMDAFIELTNMFKEQQEL 491 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEI 116 EI+ + +++ I+ LE L LE Sbjct: 492 QERFKKEAQPHEIK-SLMVNSELLKQRIKSLEESRELLKENLKQQVAYYKTLER 544 >gi|28375557|emb|CAD66602.1| SMC protein [Pyrococcus furiosus] Length = 1177 Score = 36.3 bits (82), Expect = 6.4, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + +++ +++R +E R++E K + E I +++KI+ E + Sbjct: 794 ISSLKEELSRIESRIESLESRLNEELL---PRKASLE-EEIEGLVNKINALKNNISENEK 849 Query: 62 LHTVI-GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + I + + E+ + ++ ++LE +I+ L K+ K LEI A T Sbjct: 850 ALELLNKELEKLKSIEENIKGEIRTLREKRKKLEEDISKLREKKEVLQRKLQELEIEANT 909 >gi|323359759|ref|YP_004226155.1| ATPase components of ABC transporters with duplicated ATPase domains [Microbacterium testaceum StLB037] gi|323276130|dbj|BAJ76275.1| ATPase components of ABC transporters with duplicated ATPase domains [Microbacterium testaceum StLB037] Length = 559 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M++ + + L E + I +D + + + Sbjct: 95 IKPKLDRFNEISALMADPDA--DFDALLAEMGTLQEEIDAADGWD-LDSQLEQAMDALRT 151 Query: 69 HNSDSE 74 +D+ Sbjct: 152 PPADAS 157 >gi|304387661|ref|ZP_07369847.1| ABC superfamily ATP binding cassette transporter ABC protein [Neisseria meningitidis ATCC 13091] gi|304338326|gb|EFM04450.1| ABC superfamily ATP binding cassette transporter ABC protein [Neisseria meningitidis ATCC 13091] Length = 636 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 575 DEIAALETEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMLLLEKLERWELLE 628 >gi|114321247|ref|YP_742930.1| putative ABC transporter ATP-binding protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227641|gb|ABI57440.1| ABC transporter related protein [Alkalilimnicola ehrlichii MLHE-1] Length = 555 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 2/57 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 I L RF EI + +E + + L E A + I ++ +++ EQ + Sbjct: 97 IKALLTRFDEISAKFAEPDA--DFEALMAEQAKLQDRIDATGAWELERKLEQAADAL 151 >gi|297588756|ref|ZP_06947399.1| V-type two sector ATPase, V(0) subunit I [Finegoldia magna ATCC 53516] gi|297574129|gb|EFH92850.1| V-type two sector ATPase, V(0) subunit I [Finegoldia magna ATCC 53516] Length = 646 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 38/107 (35%), Gaps = 5/107 (4%) Query: 6 HKQICDLKN-----RFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 H +I +LK R E+ + + D Y +L+ ++ + +QKK E Sbjct: 78 HNKIDELKQGKKTFRLDELTKKALDFDFDDHYKELSSLDKQLTELDQNNQTLNQKKSELT 137 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTD 107 + D + + + + +K I +L+ + + Sbjct: 138 PWENLDLDISKIDDFERVKVVTGTVSDKFIDQLKLNTKDIEDIYIEE 184 >gi|290892220|ref|ZP_06555216.1| ABC transporter [Listeria monocytogenes FSL J2-071] gi|290558343|gb|EFD91861.1| ABC transporter [Listeria monocytogenes FSL J2-071] Length = 650 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 6/68 (8%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 6 HKQICDLK-------NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQ 57 +++ +++ + AE+E +++ + K E + + + ++ + Sbjct: 583 KRKLEEVEKSMEATDEKIAELEHQLTNPEVFQDHEKALEITQELDAVKATGEKLMEEWET 642 Query: 58 EEQDLHTV 65 ++L ++ Sbjct: 643 LSEELESM 650 >gi|224102555|ref|XP_002312723.1| predicted protein [Populus trichocarpa] gi|222852543|gb|EEE90090.1| predicted protein [Populus trichocarpa] Length = 762 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 3 FLSHKQ----ICDLKNRFAEIELRMSESPSVDA------YIKLTEEYAAISPIISKISIY 52 ++ + I L R E++ ++ E +L ++ A + + + Sbjct: 429 WVPRDKKDEMIMKLIPRAQELQNQLQEWTEWANQKVMQAARRLGKDKAELKSLRQEKEEV 488 Query: 53 DQKKQEEQDLHT 64 ++ K+E+Q L Sbjct: 489 ERLKKEKQTLEE 500 >gi|62321579|dbj|BAD95121.1| putative rubisco subunit binding-protein alpha subunit [Arabidopsis thaliana] Length = 333 Score = 36.3 bits (82), Expect = 6.5, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 +L+ R A+++ + E+ SV KL E A +S ++ I + + E +D I D Sbjct: 131 DELQARIAQLKKELFETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELEDRKLRIEDA 190 Query: 70 NS 71 + Sbjct: 191 KN 192 >gi|327462286|gb|EGF08613.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK1] Length = 622 Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L++ + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFTRLSQLQQELDEQNEKLLEKYERYE 615 >gi|313240147|emb|CBY32498.1| unnamed protein product [Oikopleura dioica] Length = 262 Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 5/69 (7%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ L+ + A++ ++S+ V Y K +E A + + +I + QE + L + Sbjct: 199 QLQVLEEKRAQLRAQLSDRNWVTDYDK--KE-AKLKELNKEIRELKKINQEVERL--IAS 253 Query: 68 DHNSDSEIR 76 + +SD + Sbjct: 254 ESSSDKSFK 262 >gi|301621379|ref|XP_002940023.1| PREDICTED: tripartite motif-containing protein 65-like [Xenopus (Silurana) tropicalis] Length = 537 Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 20/156 (12%), Positives = 39/156 (25%), Gaps = 21/156 (13%) Query: 157 DGGYKEIVATISGRGVFSRMKFE-----SGVHRVQRVPATEASGRVHTSAATVAVLPEAA 211 G+ I+ K P T + + TV L + Sbjct: 31 ACGHNFCQKCINDHWDQEVRKQIPYSCPRCRKIFPERPETPKNVDLSDLVETVRALEKQN 90 Query: 212 EIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTSSEKSQHQNRLRAMK 271 + + + H + +EK ++ M Sbjct: 91 VSQEPEIQRKRNV--------------CPATKCQ-RHNRNFELFCCTEKRCVCSKCY-MV 134 Query: 272 VLRARLYDVERKRMANERSANRKLQIGSGDRSERIR 307 R + ++ E RK +G+ ++ E IR Sbjct: 135 ECRNHTLESIEEKRQMEEEQLRKSLLGNANQKEEIR 170 >gi|297626001|ref|YP_003687764.1| ABC transporter ATP-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921766|emb|CBL56324.1| ABC transporter ATP-binding protein [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 562 Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 22/59 (37%), Gaps = 5/59 (8%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYD---QKKQEEQDLH 63 + + NRF EI M+ + Y L E + + + +D Q +Q L Sbjct: 95 DLKGMLNRFNEISAEMANPDA--DYDALLPEMGELQEQLDARNAWDIDSQLQQAMDALQ 151 >gi|270284405|ref|ZP_05966049.2| ABC transporter, ATP-binding protein [Bifidobacterium gallicum DSM 20093] gi|270276801|gb|EFA22655.1| ABC transporter, ATP-binding protein [Bifidobacterium gallicum DSM 20093] Length = 551 Score = 36.3 bits (82), Expect = 6.6, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I RF EI M+ + + L EE + I +D + + + Sbjct: 89 IAAKVARFNEIGEEMANPDA--DFDSLMEEMGKLQTEIDAADGWD-LDSQLEQAMDALQC 145 Query: 69 HNSDS 73 + D+ Sbjct: 146 PDPDT 150 >gi|256086969|ref|XP_002579654.1| myosin heavy chain [Schistosoma mansoni] gi|238665122|emb|CAZ35893.1| myosin heavy chain [Schistosoma mansoni] Length = 1493 Score = 36.3 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 11 DLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHN 70 D++ R E+E R+++ D LTE +S + ++ K++ +DL + + Sbjct: 793 DMEQRIKELEERLADEE--DQAANLTEVKKKMS------AEIEELKKDVEDLESSLQKAE 844 Query: 71 SDSEIRDLAQIEVLAIEKEIREL 93 + + +D + + + E+ Sbjct: 845 QEKQTKDNQIRTLQSEMAQQDEM 867 >gi|169600149|ref|XP_001793497.1| hypothetical protein SNOG_02904 [Phaeosphaeria nodorum SN15] gi|160705390|gb|EAT89635.2| hypothetical protein SNOG_02904 [Phaeosphaeria nodorum SN15] Length = 1008 Score = 36.3 bits (82), Expect = 6.7, Method: Composition-based stats. Identities = 22/157 (14%), Positives = 49/157 (31%), Gaps = 4/157 (2%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVD--AYIKLTEEYAAISPIISKIS-IYDQKKQEEQD 61 S ++ L+ F E++ ++ S Y L E+ A+ + +I K Q Sbjct: 436 SQEKAQSLQEEFDEVQEELASSQRQSEHKYNTLQAEHKALKESVEEIQIDLQSKVDALQT 495 Query: 62 LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL-EIRAGT 120 +G + + + + AI + LE L + + E A Sbjct: 496 TQKKLGQKEEEVGQLEAEVLRLKAITGDAETLEVIKRELSDQVNHIKKLETLTREQNAEL 555 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157 ++ +R + ++ + N+ Sbjct: 556 KQYRKQHKAIEIVEEEKRSLQTKLHNMDDMQRQLNEA 592 >gi|322421144|ref|YP_004200367.1| ABC transporter-like protein [Geobacter sp. M18] gi|320127531|gb|ADW15091.1| ABC transporter related protein [Geobacter sp. M18] Length = 648 Score = 36.3 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 7/54 (12%), Positives = 19/54 (35%), Gaps = 4/54 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDA---YIKLTEEYAAIS-PIISKISIYDQK 55 +I + A++E +M+ E +A ++ I + ++ Sbjct: 595 EDKIGTKEGELAKLEEKMAAPEFFADHEAARAAGERHAQLTAEIAALYEAWESI 648 >gi|37675393|gb|AAQ97205.1| chimeric kinesin [synthetic construct] Length = 428 Score = 36.3 bits (82), Expect = 6.8, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++ LK + ++E+ ++ V+ K ++E + +++ KK EE+DL Sbjct: 356 KEKNARLKGKVEKLEIELAR-EFVNDPSKHISSKEMVRLKKLVAYWKEQAGKKGEEEDLV 414 Query: 64 TVIGD 68 + D Sbjct: 415 DIEED 419 >gi|308485009|ref|XP_003104704.1| hypothetical protein CRE_23493 [Caenorhabditis remanei] gi|308257904|gb|EFP01857.1| hypothetical protein CRE_23493 [Caenorhabditis remanei] Length = 586 Score = 36.3 bits (82), Expect = 6.9, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 30/69 (43%), Gaps = 7/69 (10%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDLHTVIG 67 I + + F +E + Y +L++E+ + + I I Q + E LH ++ Sbjct: 58 IDLIVSTFQTLEAKE------KDYEELSKEHDSEMDENIELIRENMQLQDEINFLHELLA 111 Query: 68 DHNSDSEIR 76 + + +++ Sbjct: 112 EKRKEDDMK 120 >gi|301301193|ref|ZP_07207349.1| ATP-dependent chaperone protein ClpB [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851192|gb|EFK78920.1| ATP-dependent chaperone protein ClpB [Lactobacillus salivarius ACS-116-V-Col5a] Length = 863 Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 8/113 (7%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R E++ +S + + K + I KK E + + ++ Sbjct: 440 KKRLEELQAELS-----NLHEKANKLRQRWEDEKLDIQKVSDKKSELDKARHQLEEAENN 494 Query: 73 SEIRDL---AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + +EKE+++LEN + I E+ + G Sbjct: 495 YDLEKAAKLQHATIPQLEKELQQLENSERPKEWMVEESVTDKEIAEVISRMTG 547 >gi|302875735|ref|YP_003844368.1| ATP-dependent chaperone ClpB [Clostridium cellulovorans 743B] gi|307689166|ref|ZP_07631612.1| ATP-dependent chaperone ClpB [Clostridium cellulovorans 743B] gi|302578592|gb|ADL52604.1| ATP-dependent chaperone ClpB [Clostridium cellulovorans 743B] Length = 866 Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS----PIISKISIYDQKKQ 57 + + ++I L+ + S+S ++ Y L +E + + + +K K Sbjct: 417 LDILKRKIFQLEIEMEALSKE-SDSSAIQRYEALKKEVSELKEQDLELSAKYEKEKHKIL 475 Query: 58 EEQDLHTVIGDHNSDSEIRD 77 ++L + I D + E + Sbjct: 476 SVKELKSEIDDIKGEIERAE 495 >gi|189515813|ref|XP_700704.3| PREDICTED: serine/threonine-protein kinase N2 [Danio rerio] gi|122891175|emb|CAM14346.1| novel protein similar to vertebrate protein kinase N2 (PKN2) [Danio rerio] Length = 970 Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 11/62 (17%), Positives = 30/62 (48%), Gaps = 2/62 (3%) Query: 6 HKQICDLKNRFA-EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE-QDLH 63 +++ ++K + EI + V+ K+T E ++ + + + ++K +E Q+L Sbjct: 29 QQKLDEIKEQIKREIRKELKIKEGVENLRKVTTEKKRLAYVDNMLKKSNKKLEELHQELQ 88 Query: 64 TV 65 + Sbjct: 89 EL 90 >gi|113953637|ref|YP_731101.1| ATP-dependent Clp protease Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CC9311] gi|113880988|gb|ABI45946.1| ATP-dependent Clp protease, Hsp 100, ATP-binding subunit ClpB [Synechococcus sp. CC9311] Length = 863 Score = 36.3 bits (82), Expect = 7.0, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 33/71 (46%), Gaps = 7/71 (9%) Query: 7 KQICDLKNRFAEIE-LRMS-----ESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEE 59 ++I ++ + ++E ++S ++ S + +L E A +S S ++ + Q+K Sbjct: 411 EEIDEIDRKILQLEMEKLSLGRESDAASQERLQRLERELAELSEQQSTLNAQWQQEKGAI 470 Query: 60 QDLHTVIGDHN 70 +L + + Sbjct: 471 DELSALKEEIE 481 >gi|196230546|ref|ZP_03129408.1| Class I peptide chain release factor [Chthoniobacter flavus Ellin428] gi|196225476|gb|EDY19984.1| Class I peptide chain release factor [Chthoniobacter flavus Ellin428] Length = 132 Score = 36.3 bits (82), Expect = 7.1, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 1/76 (1%) Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYD 279 D R+SG GGQHVN +AV + H+P+G VT +SQ NR A L + + Sbjct: 24 DFEEKFSRSSGPGGQHVNKVSTAVMLRHVPSGAAVTVQDTRSQSMNRQLAWTRLLDAIEE 83 Query: 280 VERKRMANERSANRKL 295 R A RS K Sbjct: 84 QRRAERAARRSEIEKK 99 >gi|242214518|ref|XP_002473081.1| predicted protein [Postia placenta Mad-698-R] gi|220727819|gb|EED81727.1| predicted protein [Postia placenta Mad-698-R] Length = 268 Score = 36.3 bits (82), Expect = 7.3, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 + ++ ED+ +R SG GGQ +N T++ V++ H PTG+ V +S QNR Sbjct: 154 HKQRVVPELKEEDLEEAFVRGSGPGGQSINKTENNVQLLHKPTGLRVSCQETRSLSQNRK 213 Query: 268 RAMKVLRARL 277 A ++L +L Sbjct: 214 LARRILLGKL 223 >gi|228476899|ref|ZP_04061544.1| ABC transporter ATP binding protein [Streptococcus salivarius SK126] gi|228251473|gb|EEK10618.1| ABC transporter ATP binding protein [Streptococcus salivarius SK126] Length = 639 Score = 36.3 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI-SIYDQKKQEEQ 60 + ++ R EI M E+ V L +E +S + + ++ + Sbjct: 586 LETIEERLEEISAAMLETNDVAELSDLQKELDDLSVSQEALMEEWSDLSEQLE 638 >gi|154685218|ref|YP_001420379.1| YfmR [Bacillus amyloliquefaciens FZB42] gi|154351069|gb|ABS73148.1| YfmR [Bacillus amyloliquefaciens FZB42] Length = 629 Score = 36.3 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + +E ++E +L E A + + +L Sbjct: 569 EDKIAGLEEKHQRLEAEIAEAGSDFGKIQELMAEQA------KTAEELEAAMERWTELSL 622 Query: 65 VIGDHNS 71 +I + + Sbjct: 623 MIEELEN 629 >gi|154486842|ref|ZP_02028249.1| hypothetical protein BIFADO_00674 [Bifidobacterium adolescentis L2-32] gi|154084705|gb|EDN83750.1| hypothetical protein BIFADO_00674 [Bifidobacterium adolescentis L2-32] Length = 558 Score = 36.3 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I + RF +I M+ + + L EE + I + +D + + + Sbjct: 96 IAEKVARFNQIGEEMANPDA--DFDALMEEMGKLQNDIDAANGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + D+ Sbjct: 153 PDPDT 157 >gi|148377701|ref|YP_001256577.1| ABC transporter ATP-binding protein [Mycoplasma agalactiae PG2] gi|148291747|emb|CAL59136.1| P115 Like (Mycoplasma hyorhinis) ABCtransporter ATP Binding Protein [Mycoplasma agalactiae PG2] Length = 995 Score = 36.3 bits (82), Expect = 7.4, Method: Composition-based stats. Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 2/113 (1%) Query: 10 CDLKNRFAEIELRMSES-PSVDAYIKLTEEYA-AISPIISKISIYDQKKQEEQDLHTVIG 67 DL +R +E ++S++ +E + + + +++ E + +I Sbjct: 257 NDLNDRIKNLEAKISQNIEFKTNLEAAQKEISIELEAVKDRLNNLSIAIARENERERLIV 316 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + IEK + + L D S IL+ Sbjct: 317 EGELKVDTTEQINAYKTLIEKSAQRVAYYNREYDLINKRISDNSEILDAHDKE 369 >gi|310797985|gb|EFQ32878.1| hypothetical protein GLRG_08022 [Glomerella graminicola M1.001] Length = 596 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 9/138 (6%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDL 62 S Q+ K+++A +E ++E + + ++E + I + ++K QE+ + Sbjct: 14 SSEDQLRWYKSQYASLEEELAE------FRESSKELEQELEKDIEQAEKRERKLQEKAES 67 Query: 63 HTVIGDHNSDSEIRDLAQIEVLAIEKEIR--ELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + E L + L + + + E +A Sbjct: 68 LKFEAEEWKSKYNQAKKDANAAQNALEKEITMLRDTNRTLQMKLRDIEVVNDDFERQARN 127 Query: 121 GGSEAALFVGDLFRMYER 138 S L ER Sbjct: 128 TSSSLEDLESKLNSSIER 145 >gi|302024126|ref|ZP_07249337.1| peptide chain release factor 2 [Streptococcus suis 05HAS68] Length = 50 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 3/45 (6%), Positives = 15/45 (33%) Query: 23 MSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 M+E + + + ++ + + + Q + ++ Sbjct: 1 MTEPDFWNDNLAAQKTSQELNELKNTYGNFHQMLDLYDESEILLD 45 >gi|269102659|ref|ZP_06155356.1| putative ABC transporter ATP-binding protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162557|gb|EEZ41053.1| putative ABC transporter ATP-binding protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 642 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 9/61 (14%), Positives = 28/61 (45%), Gaps = 2/61 (3%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+N AE++ ++++ T+ A ++ + K ++ + ++L + Sbjct: 583 KIEQLENDIAELQEKINDPGFFADVKNDTQ--AVLTLLAEKEQAFEVAFERWEELEAMQK 640 Query: 68 D 68 + Sbjct: 641 E 641 >gi|227888737|ref|ZP_04006542.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus johnsonii ATCC 33200] gi|227850764|gb|EEJ60850.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus johnsonii ATCC 33200] Length = 641 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+N EI+ M+ ++ KL +S + + DQ + ++ + Sbjct: 582 RIEKLENEEQEIQTEMANPDIAASFEKLGPLQEKLSAVQEQ---LDQANTDWENALEALD 638 Query: 68 DHN 70 + Sbjct: 639 EFE 641 >gi|45440047|ref|NP_991586.1| putative ABC transporter ATP-binding protein [Yersinia pestis biovar Microtus str. 91001] gi|51598006|ref|YP_072197.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 32953] gi|145597433|ref|YP_001161508.1| putative ABC transporter ATP-binding protein [Yersinia pestis Pestoides F] gi|153949739|ref|YP_001402880.1| ABC transporter ATP-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162421609|ref|YP_001608008.1| putative ABC transporter ATP-binding protein [Yersinia pestis Angola] gi|186897202|ref|YP_001874314.1| putative ABC transporter ATP-binding protein [Yersinia pseudotuberculosis PB1/+] gi|229836329|ref|ZP_04456496.1| Glutathione-regulated potassium-efflux systemATP-binding protein [Yersinia pestis Pestoides A] gi|45434902|gb|AAS60463.1| ATPase components of ABC transporters with duplicated ATPase domains [Yersinia pestis biovar Microtus str. 91001] gi|51591288|emb|CAH22954.1| putative ABC transporter with fused ATP-binding domains [Yersinia pseudotuberculosis IP 32953] gi|145209129|gb|ABP38536.1| ATPase [Yersinia pestis Pestoides F] gi|152961234|gb|ABS48695.1| ABC transporter, ATP-binding protein [Yersinia pseudotuberculosis IP 31758] gi|162354424|gb|ABX88372.1| ABC transporter, ATP-binding protein [Yersinia pestis Angola] gi|186700228|gb|ACC90857.1| ABC transporter related [Yersinia pseudotuberculosis PB1/+] gi|229706397|gb|EEO92404.1| Glutathione-regulated potassium-efflux systemATP-binding protein [Yersinia pestis Pestoides A] Length = 640 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEE 59 + KQ+ L A IE ++++S D K LT+ + + SK+ + + + Sbjct: 565 IMTLEKQMDKLSTELAAIEAQLADSALYDIARKADLTQCLLQQTQVKSKLEETEMQWLDV 624 Query: 60 QDLHTVIGDHNSDSE 74 Q+ ++ SD++ Sbjct: 625 QEQLEILTKEFSDAD 639 >gi|323340147|ref|ZP_08080411.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus ruminis ATCC 25644] gi|323092338|gb|EFZ34946.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus ruminis ATCC 25644] Length = 650 Score = 36.3 bits (82), Expect = 7.5, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI-ISKISIYDQKKQEEQDLHTVIG 67 + L + ++E +MS + + K+ E A + I + +Q +L + Sbjct: 591 VEKLDAQKNDLENQMSSPENYNDLEKMGELQAKLQEISKKLAEAEENWEQASMELEEFLA 650 >gi|269795762|ref|YP_003315217.1| ABC transporter ATPase [Sanguibacter keddieii DSM 10542] gi|269097947|gb|ACZ22383.1| ATPase component of ABC transporters with duplicated ATPase domain [Sanguibacter keddieii DSM 10542] Length = 560 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 11/68 (16%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF EI M+E + + L E + + +D + + + Sbjct: 96 IKGKLDRFNEISALMAEPDA--DFDTLLAEMGELQEALDHADAWD-LDAQLEQAMDALRC 152 Query: 69 HNSDSEIR 76 D++++ Sbjct: 153 PPPDADVK 160 >gi|163754567|ref|ZP_02161689.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1] gi|161325508|gb|EDP96835.1| hypothetical protein KAOT1_16768 [Kordia algicida OT-1] Length = 1141 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 14/125 (11%), Positives = 46/125 (36%), Gaps = 10/125 (8%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI----------YDQK 55 K++ +L E+ + + + + +L +++ + + ++ ++K Sbjct: 656 QKELQELAKEQEELSKKSGDQNTKEQQEELNKKFEDLQKQMDELDKENEELRKPLDLERK 715 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 K EE+D+ + D E + +Q E E++ + + + + ++ Sbjct: 716 KDEEEDIKQEQQEATDDLEKSEESQSEQQKSEQQKSAKQKQKKAAQKMQRMSKSMATAMQ 775 Query: 116 IRAGT 120 + Sbjct: 776 MSGQQ 780 >gi|123470155|ref|XP_001318285.1| viral A-type inclusion protein [Trichomonas vaginalis G3] gi|121901040|gb|EAY06062.1| viral A-type inclusion protein, putative [Trichomonas vaginalis G3] Length = 2416 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 13/115 (11%), Positives = 44/115 (38%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 +I +L++ +E++ + ++ + K+ + I + S I +++K + Sbjct: 951 ENRIHELESEISELKKELDQNNNQQNDEKIEKLQKEIEDLKSVIDEENEQKVSNTEAENR 1010 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 I + S+ + + + + + + L + + K+ E++ Sbjct: 1011 IHELESEISELKKELDQNNNQQNDEKIEKLQKEIEDLKNELESSKAENEELQNEF 1065 >gi|322786948|gb|EFZ13172.1| hypothetical protein SINV_00047 [Solenopsis invicta] Length = 837 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 33/64 (51%), Gaps = 8/64 (12%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAIS-PIISKISIYDQKKQEEQDLHTVIG 67 + DL+NR AE + D K +E + + + SK +++ K++++DL ++ Sbjct: 746 VADLENRLAEYTQQH------DEKNKENKE-SELEYQLKSKTEEFEKLKKDQEDLLELLT 798 Query: 68 DHNS 71 D +S Sbjct: 799 DQDS 802 >gi|227495354|ref|ZP_03925670.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinomyces coleocanis DSM 15436] gi|226831224|gb|EEH63607.1| ABC superfamily ATP binding cassette transporter, ABC protein [Actinomyces coleocanis DSM 15436] Length = 553 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + R+ EI M + + + L EE + I + +D + + + Sbjct: 88 DLVAKLKRYNEISELMCDPDA--DFDALMEEMGKLQDEIEAENGWD-LDSQLEQAMDALR 144 Query: 68 DHNSDSEIR 76 D++++ Sbjct: 145 CPPPDADVK 153 >gi|224543683|ref|ZP_03684222.1| hypothetical protein CATMIT_02893 [Catenibacterium mitsuokai DSM 15897] gi|224523336|gb|EEF92441.1| hypothetical protein CATMIT_02893 [Catenibacterium mitsuokai DSM 15897] Length = 623 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 8/56 (14%), Positives = 22/56 (39%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 I D + + + E + ++ Y K E A + + +++ + +E + Sbjct: 564 ENDISDFEEKISAKEEELHSDEVMNDYQKYNEITAELEDLNNQLEELMTEWEELSE 619 >gi|241951644|ref|XP_002418544.1| conserved hypothetical protein [Candida dubliniensis CD36] gi|223641883|emb|CAX43846.1| conserved hypothetical protein [Candida dubliniensis CD36] Length = 171 Score = 36.3 bits (82), Expect = 7.6, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 G GGQ +N ++S V++THIPTG++V + +SQ QNR A + L +L D Sbjct: 46 HGGRGPGGQKINKSNSKVQLTHIPTGMVVSCQATRSQEQNRAIAREKLALKLDDYY 101 >gi|170022525|ref|YP_001719030.1| putative ABC transporter ATP-binding protein [Yersinia pseudotuberculosis YPIII] gi|169749059|gb|ACA66577.1| ABC transporter related [Yersinia pseudotuberculosis YPIII] Length = 640 Score = 36.3 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 34/75 (45%), Gaps = 2/75 (2%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEE 59 + KQ+ L A IE ++++S D K LT+ + + SK+ + + + Sbjct: 565 IMTLEKQMDKLSTELAAIEAQLADSALYDIARKADLTQCLLQQTQVKSKLEETEMQWLDV 624 Query: 60 QDLHTVIGDHNSDSE 74 Q+ ++ SD++ Sbjct: 625 QEQLEILTKEFSDAD 639 >gi|90021270|ref|YP_527097.1| hypothetical protein Sde_1623 [Saccharophagus degradans 2-40] gi|89950870|gb|ABD80885.1| ABC transporter related [Saccharophagus degradans 2-40] Length = 636 Score = 36.3 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 26/64 (40%), Gaps = 5/64 (7%) Query: 6 HKQICDLKNRFAEIELRMSESPSV----DAYIKLTEEYAAI-SPIISKISIYDQKKQEEQ 60 KQ+ L+ + A++E +++ D L ++ + S + + K E + Sbjct: 570 EKQMETLQEKLAKLEEELADPELYQTGGDKLKTLLKQQGELRSQLAETEEEWFIKSDELE 629 Query: 61 DLHT 64 L+ Sbjct: 630 ALNA 633 >gi|71020659|ref|XP_760560.1| hypothetical protein UM04413.1 [Ustilago maydis 521] gi|46100448|gb|EAK85681.1| hypothetical protein UM04413.1 [Ustilago maydis 521] Length = 1371 Score = 36.3 bits (82), Expect = 7.7, Method: Composition-based stats. Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 4/54 (7%) Query: 10 CDLKNRFAEIELRMSESPSVDA----YIKLTEEYAAISPIISKISIYDQKKQEE 59 +L+ + E E + ++A KLT+E + + ++ ++ +E Sbjct: 1200 AELEKKLQEFEKLTLDKQELEARVGSLDKLTKEKQELEKKVKQLEKLSKQNKEL 1253 >gi|329666821|gb|AEB92769.1| ABC transporter ATPase component [Lactobacillus johnsonii DPC 6026] Length = 641 Score = 36.3 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+N EI+ M+ ++ KL +S + + DQ + ++ + Sbjct: 582 RIEKLENEEQEIQTEMANPDIAASFEKLGPLQEKLSAVQEQ---LDQANTDWENALEALD 638 Query: 68 DHN 70 + Sbjct: 639 EFE 641 >gi|156552109|ref|XP_001605206.1| PREDICTED: similar to conserved hypothetical protein [Nasonia vitripennis] Length = 159 Score = 36.3 bits (82), Expect = 7.8, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 1/87 (1%) Query: 208 PEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 I +D+ I +R SG GGQ N T + V + H+PTG+++ +SQ QN Sbjct: 36 RIDTSKVPKINEDDLEIQYVRGSGPGGQSTNKTSNNVVMKHLPTGLVIKCHETRSQTQNL 95 Query: 267 LRAMKVLRARLYDVERKRMANERSANR 293 A + L +L + A E + Sbjct: 96 KIAKEKLINKLDLLYNGEDAVENQKKK 122 >gi|332971588|gb|EGK10538.1| ABC superfamily ATP binding cassette transporter, ABC protein [Kingella kingae ATCC 23330] Length = 637 Score = 36.3 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ A++ ++S+ Y K + I + K+ ++ + Sbjct: 576 DEIAALEAEQADLNAQLSDPEIFKDYEKAGSLQSRAEEIEMLLLEKLERWEILE 629 >gi|115384276|ref|XP_001208685.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624] gi|114196377|gb|EAU38077.1| hypothetical protein ATEG_01320 [Aspergillus terreus NIH2624] Length = 1341 Score = 36.3 bits (82), Expect = 7.9, Method: Composition-based stats. Identities = 18/131 (13%), Positives = 42/131 (32%), Gaps = 7/131 (5%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS----IYDQKKQEEQ- 60 K++ + ++R EIE +E S+ L E A K +E Q Sbjct: 347 RKKLKEYESRAEEIERLQAEHESLMEMATLDREMAE--ETADAFKHECEALRMKVEELQL 404 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 ++ + ++ S + + + + E L+ +D + L+ + Sbjct: 405 EVEVLRDENEELSHVMSPEEKSSQGWLQMEKTNERLREALIRLRDMTQQQENELKDQIKE 464 Query: 121 GGSEAALFVGD 131 + + Sbjct: 465 LQQDLEDYAAI 475 >gi|281485061|gb|ADA70347.1| putative peptide chain release factor 2 [Campylobacter jejuni] Length = 34 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 18/34 (52%) Query: 317 TDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAK 350 D+R +++ +L G I +I +L A +A+ Sbjct: 1 KDNRSGEAFSQVDNILDGDIKKMIEGVLIALKAE 34 >gi|297734721|emb|CBI16955.3| unnamed protein product [Vitis vinifera] Length = 224 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 ++ + T ++SG GGQH N +SAVR+ H+PTGI+ ++SQH+NR Sbjct: 61 MKQCEMSTFKSSGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHKNR 109 >gi|225459890|ref|XP_002263666.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 507 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 34/49 (69%), Gaps = 1/49 (2%) Query: 219 LEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNR 266 ++ + T ++SG GGQH N +SAVR+ H+PTGI+ ++SQH+NR Sbjct: 61 MKQCEMSTFKSSGPGGQHRNKRESAVRLKHLPTGIIAQAVEDRSQHKNR 109 >gi|119962537|ref|YP_948127.1| ABC transporter ATP-binding protein [Arthrobacter aurescens TC1] gi|119949396|gb|ABM08307.1| putative ABC transporter, ATP-binding protein [Arthrobacter aurescens TC1] Length = 560 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNS 71 RF EI M+ + Y L +E + I +D + + + + Sbjct: 99 KIQRFNEISEEMANPDA--DYETLLDEMGKLQEAIDAADAWD-IDSQLEQAMDALRCPPA 155 Query: 72 DSE 74 DS+ Sbjct: 156 DSD 158 >gi|241758790|ref|ZP_04756903.1| ABC transporter ATP-binding protein uup [Neisseria flavescens SK114] gi|241320998|gb|EER57211.1| ABC transporter ATP-binding protein uup [Neisseria flavescens SK114] Length = 635 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPI----ISKISIYDQKK 56 +I L+ AEI ++S+ Y K + I + K+ ++ + Sbjct: 574 DEIAALETEQAEINAQLSDPEIFKDYEKAGALQSRAEEIEMSLLEKLERWEWLE 627 >gi|56205922|emb|CAI24424.1| myosin XVIIIa [Mus musculus] Length = 1998 Score = 36.3 bits (82), Expect = 8.0, Method: Composition-based stats. Identities = 6/86 (6%), Positives = 26/86 (30%), Gaps = 1/86 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDLHT 64 +++ L+++ +E M + V E + +++ + ++ Sbjct: 1753 QEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFEKTQVKRLENLASRLKETME 1812 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEI 90 + + + + E + Sbjct: 1813 KLTEERDQRAAAENREKEQNKRLQRQ 1838 >gi|328910709|gb|AEB62305.1| putative ABC transporter (ATP-binding protein) YfmR [Bacillus amyloliquefaciens LL3] Length = 629 Score = 36.3 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + +E ++E +L E A + + +L Sbjct: 569 EDKIAGLEEKHQRLEAEIAEAGSDFGKIQELMAEQA------KTAEELEAAMERWTELSL 622 Query: 65 VIGDHNS 71 +I + + Sbjct: 623 MIEELEN 629 >gi|148727317|ref|NP_001092009.1| cortactin binding protein 2 [Gallus gallus] gi|117380068|gb|ABK34433.1| cortactin-binding protein 2 [Gallus gallus] Length = 1630 Score = 36.3 bits (82), Expect = 8.1, Method: Composition-based stats. Identities = 14/130 (10%), Positives = 46/130 (35%), Gaps = 15/130 (11%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLT-------------EEYAAISPIISKIS 50 + Q+ +L+ ++ R+ E + +I L EE + ++SK Sbjct: 137 IEKSQLQNLELEHKKLSARLEEERGKNKHIVLMLVKECKQLSGRIVEEAQKLEEVMSKFE 196 Query: 51 IYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 +K E ++ ++ + +++ + ++ + E +L +++ ++ Sbjct: 197 EEKKKASELEE--SLAAEKQKSTQMEAQMEKQLSEFDTEREQLRAKLHREEAHTSDLREE 254 Query: 111 SCILEIRAGT 120 + Sbjct: 255 RDKMIKMIEQ 264 >gi|290977967|ref|XP_002671708.1| hypothetical protein NAEGRDRAFT_81454 [Naegleria gruberi] gi|284085279|gb|EFC38964.1| hypothetical protein NAEGRDRAFT_81454 [Naegleria gruberi] Length = 1176 Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 1 MVFL---SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQ 57 M + + K+I ++++ EIE + KL + ++ + I + + + Sbjct: 348 MQMVQSKADKEIKAVEDKIKEIEKENEDHEKQKESEKLKSTSSELTASLISIKNLESEVE 407 Query: 58 EEQDLHTVIG 67 E++D T + Sbjct: 408 EKEDKITELE 417 >gi|16804112|ref|NP_465597.1| hypothetical protein lmo2073 [Listeria monocytogenes EGD-e] gi|224501129|ref|ZP_03669436.1| hypothetical protein LmonFR_01170 [Listeria monocytogenes FSL R2-561] gi|254827039|ref|ZP_05231726.1| ABC transporter [Listeria monocytogenes FSL N3-165] gi|16411543|emb|CAD00151.1| lmo2073 [Listeria monocytogenes EGD-e] gi|258599421|gb|EEW12746.1| ABC transporter [Listeria monocytogenes FSL N3-165] Length = 650 Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 6 HKQICDLK-------NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQ 57 +++ +++ + AE+EL+++ + K E + + + ++ +Q Sbjct: 583 KRKLEEIEKSMEETDEKIAELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEWEQ 642 Query: 58 EEQDLHTV 65 ++L ++ Sbjct: 643 ISEELESI 650 >gi|319441708|ref|ZP_07990864.1| hypothetical protein CvarD4_08067 [Corynebacterium variabile DSM 44702] Length = 1116 Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 5/74 (6%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + +++ R + M++ P D +L + + ++E +++ +IGD Sbjct: 899 LREIRERIEPVNRIMADLPFYDDDHRLQITLRENQSEVR-----RRFRKELREVRALIGD 953 Query: 69 HNSDSEIRDLAQIE 82 ++D E ++ Sbjct: 954 ASTDEERAEVYPRM 967 >gi|297243777|ref|ZP_06927707.1| ATPase component of ABC transporter with duplicated ATPase domain [Gardnerella vaginalis AMD] gi|296888198|gb|EFH26940.1| ATPase component of ABC transporter with duplicated ATPase domain [Gardnerella vaginalis AMD] Length = 551 Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I RF +I M+ + + L EE + I + +D + + + Sbjct: 89 IAQKVARFNQIGEEMANPDA--DFDALMEEMGKLQTEIDAANGWD-LDSQLEQAMDALQC 145 Query: 69 HNSDS 73 + DS Sbjct: 146 PDQDS 150 >gi|284802519|ref|YP_003414384.1| hypothetical protein LM5578_2275 [Listeria monocytogenes 08-5578] gi|284995661|ref|YP_003417429.1| hypothetical protein LM5923_2226 [Listeria monocytogenes 08-5923] gi|284058081|gb|ADB69022.1| hypothetical protein LM5578_2275 [Listeria monocytogenes 08-5578] gi|284061128|gb|ADB72067.1| hypothetical protein LM5923_2226 [Listeria monocytogenes 08-5923] Length = 650 Score = 36.3 bits (82), Expect = 8.2, Method: Composition-based stats. Identities = 8/68 (11%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 6 HKQICDLK-------NRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIY-DQKKQ 57 +++ +++ + AE+EL+++ + K E + + + ++ +Q Sbjct: 583 KRKLEEIEKSMEETDEKIAELELQLTNPEVFQDHEKALEITQELDAVKADGEKLMEEWEQ 642 Query: 58 EEQDLHTV 65 ++L ++ Sbjct: 643 ISEELESI 650 >gi|322419681|ref|YP_004198904.1| Class I peptide chain release factor [Geobacter sp. M18] gi|320126068|gb|ADW13628.1| Class I peptide chain release factor [Geobacter sp. M18] Length = 106 Score = 35.9 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 34/63 (53%), Positives = 44/63 (69%), Gaps = 1/63 (1%) Query: 216 DIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLR 274 +I DI+++ RASG GGQH NTTDSAVRI H+PTGI+ S +SQ QNR +A++ L Sbjct: 3 EIKESDIKVEFYRASGPGGQHRNTTDSAVRIRHLPTGIVAQASESRSQAQNREKALERLA 62 Query: 275 ARL 277 L Sbjct: 63 EML 65 >gi|157693047|ref|YP_001487509.1| molecular chaperone DnaK [Bacillus pumilus SAFR-032] gi|167016927|sp|A8FFD2|DNAK_BACP2 RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70 gi|157681805|gb|ABV62949.1| chaperone DnaK [Bacillus pumilus SAFR-032] Length = 613 Score = 35.9 bits (81), Expect = 8.3, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 +VF + K + DL+ + E ++ ++ +K E + I +K QE Sbjct: 512 LVFTTEKTLKDLEGKIDE--EQVKKANDAKDALKAAIEKGELEDIKAKKDELQTIVQEL 568 >gi|270014225|gb|EFA10673.1| muscle-specific protein 300 [Tribolium castaneum] Length = 15417 Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 14/127 (11%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYI---------KLTEEYAA--ISPIISKISIYDQ 54 +++ + +++AE+E + S K TEE + ++S Sbjct: 3110 QEKLQSIHSKYAEVEKLIQNLDSWLKQKEGQAKDQSLKSTEETKRGHLDKLLSLEKEVLG 3169 Query: 55 KKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCIL 114 K+++ ++ + + D ++ L + +++ + +++ + L Sbjct: 3170 KEKDFGEVAELAKNLEGDVKVSQLLTRYQALKNLLKEAISRYRSFVNEHQSFNEEYATFL 3229 Query: 115 EIRAGTG 121 G Sbjct: 3230 HWLTEKG 3236 >gi|255548876|ref|XP_002515494.1| conserved hypothetical protein [Ricinus communis] gi|223545438|gb|EEF46943.1| conserved hypothetical protein [Ricinus communis] Length = 710 Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 47/112 (41%), Gaps = 9/112 (8%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKIS-IYDQKKQEEQDLH 63 + KQ+ +L ++ E+E + S L +E+ + + + Q +E+ ++ Sbjct: 517 TKKQLQNLSKQYEELEAK-----SKADIKFLAKEFKTLKSSQAVLKEELSQSVREKYEVE 571 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILE 115 ++ + E+R + + + R L N + L ++++ I+E Sbjct: 572 KLLQEE---REMRMHEKNARKKLLYDCRTLCNRLKECNLNLSSEEEDEFIVE 620 >gi|219886233|gb|ACL53491.1| unknown [Zea mays] Length = 474 Score = 35.9 bits (81), Expect = 8.4, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 30/62 (48%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D++ R A+++ +S++ S KL E A +S ++ + + + E +D I D Sbjct: 275 DDIQARIAQLKRELSQTDSTYDSEKLAERIAKLSGGVAVVKVGASTEAELEDRKLRIEDA 334 Query: 70 NS 71 + Sbjct: 335 KN 336 >gi|309389297|gb|ADO77177.1| DNA mismatch repair protein MutS [Halanaerobium praevalens DSM 2228] Length = 868 Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 56/196 (28%), Gaps = 10/196 (5%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 ++ R +E +D Y L + A ++ I I + + + ++ Sbjct: 319 KAIEQRHTALE------EIIDNYQVLDKLRAELNEIYDLERIMSKITYQSANARDLVALK 372 Query: 70 NSDSEIRDLAQIEVLAIEK-EIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 NS +++ + + I + + GG A+ + Sbjct: 373 NSLAKLPAVENLMQNLKSDLIIEMQTKFDLLEDMHDLIEKAIKSEPPTTITEGGIIASDY 432 Query: 129 VGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRV 188 L ++ + ++ + W ++ G + VF + H + Sbjct: 433 NSSLDQLRDLVSSGKDWITKLQKEEREKTG---INTLKVGFNKVFGYYLEVTNSHTDKVP 489 Query: 189 PATEASGRVHTSAATV 204 E + S + Sbjct: 490 ERYERKQTLSNSERYI 505 >gi|242223756|ref|XP_002477455.1| predicted protein [Postia placenta Mad-698-R] gi|220722947|gb|EED77345.1| predicted protein [Postia placenta Mad-698-R] Length = 275 Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 + ++ ED+ +R SG GGQ +N T++ V++ H PTG+ V +S QNR Sbjct: 159 HKQRVVPELKEEDLEEAFVRGSGPGGQSINKTENNVQLLHKPTGLRVSCQETRSLSQNRK 218 Query: 268 RAMKVLRARL 277 A ++L +L Sbjct: 219 LARRILLGKL 228 >gi|126650990|ref|ZP_01723201.1| DNA helicase [Bacillus sp. B14905] gi|126592191|gb|EAZ86240.1| DNA helicase [Bacillus sp. B14905] Length = 1260 Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 16/114 (14%), Positives = 41/114 (35%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV 65 KQ+ ++ ++E +++ PS++ +E + + Y + +++Q L Sbjct: 494 EKQLAQIEPIIQQLEQTLADHPSIENLQLTIQETSQKVEQLEAAVQYKELLEQKQQLTVQ 553 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAG 119 D E + I + +K + L + + S +L + Sbjct: 554 FQDIQEKYETENNRLIIMKEAQKYVHTLTSYERIQRYLQHYQIRPSHVLSQQMN 607 >gi|123390967|ref|XP_001299982.1| inversin protein alternative isoform [Trichomonas vaginalis G3] gi|121880941|gb|EAX87052.1| inversin protein alternative isoform, putative [Trichomonas vaginalis G3] Length = 1469 Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 14/108 (12%), Positives = 36/108 (33%), Gaps = 2/108 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD--LHT 64 ++I L+ EI + S++ +L + + + K++ + + + L Sbjct: 116 EKIQKLQTELNEIPKQKSDNEIQSLQSQLNQINEESNKLKEKLNEMESNTNQADETILSK 175 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSC 112 + SD ++ L+ + + + L K T Sbjct: 176 IKELKESDDFESIYNFLDELSSQGNRKMISKACEEGLWKKTTTVHFRD 223 >gi|91080025|ref|XP_972114.1| PREDICTED: similar to Ofd1 protein, putative [Tribolium castaneum] gi|270003227|gb|EEZ99674.1| hypothetical protein TcasGA2_TC002431 [Tribolium castaneum] Length = 634 Score = 35.9 bits (81), Expect = 8.5, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 36/85 (42%), Gaps = 5/85 (5%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQK---- 55 M+ + Q+ +++ + EIE ++ L EY + I + Y+++ Sbjct: 155 MLMIREAQLKEMREKIKEIEASLAGKELKVLSQDLKAEYEKQLQNIRNLRIFYEERQRAD 214 Query: 56 KQEEQDLHTVIGDHNSDSEIRDLAQ 80 K++++++ ++ + D + Sbjct: 215 KKQKEEMKKLLEEVKIDLQDEKNKN 239 >gi|326796211|ref|YP_004314031.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1] gi|326546975|gb|ADZ92195.1| ATP-dependent chaperone ClpB [Marinomonas mediterranea MMB-1] Length = 861 Score = 35.9 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 9/99 (9%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R E+E + +L +EY+ + I + Q Q+ ++ + + Sbjct: 438 KQRLKELESEIE---------RLQKEYSDLEEIWNAEKAQVQGAQKLKEELEQVKQEMEE 488 Query: 73 SEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKS 111 + + I LE EI L ++ + + Sbjct: 489 ARRQGNLAKMSELQYGVIPMLEAEIEKATLAEEGEQETQ 527 >gi|291411528|ref|XP_002722041.1| PREDICTED: myosin XVIIIB-like [Oryctolagus cuniculus] Length = 2524 Score = 35.9 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 8/106 (7%), Positives = 33/106 (31%), Gaps = 13/106 (12%) Query: 10 CDLKNRFAEIELRMSESPS------------VDAYIKLTEEYAAISPIISKI-SIYDQKK 56 L+++ A++ +++ ++ + E + ++ + + Sbjct: 1389 DVLESKIADLTTELADERFKGDVACQVLESEWAERLQASRELQELKSKYEQVQKKLGEVE 1448 Query: 57 QEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 ++ ++ I + + A + ++ E E L Sbjct: 1449 KQLEEAQQKIQLSDLERNRPGGADEWQMRLDCAQMENEFLRKRLQQ 1494 >gi|255321418|ref|ZP_05362578.1| ABC transporter ATP-binding protein uup [Campylobacter showae RM3277] gi|255301571|gb|EET80828.1| ABC transporter ATP-binding protein uup [Campylobacter showae RM3277] Length = 646 Score = 35.9 bits (81), Expect = 8.6, Method: Composition-based stats. Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI 66 ++I L+ + EI +S+ I LT Y + + S++ + + E ++ + Sbjct: 585 EKIAALEAKIKEINAGLSDPKIY-QQIGLTALYNDLEAVKSELETLENEYFEVLEIAENL 643 Query: 67 G 67 Sbjct: 644 E 644 >gi|325831247|ref|ZP_08164539.1| ATP-binding cassette protein, ChvD family [Eggerthella sp. HGA1] gi|325486848|gb|EGC89295.1| ATP-binding cassette protein, ChvD family [Eggerthella sp. HGA1] Length = 559 Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + +RF +I M+E + + L E + I + +D + + Sbjct: 96 VKAKIDRFNKIGEEMAEPDA--DFDALMAEMGELQDAIDAANGWD-LDSQLSQAMDALQC 152 Query: 69 HNSD 72 + D Sbjct: 153 PDPD 156 >gi|296284204|ref|ZP_06862202.1| putative ABC transporter ATP-binding protein [Citromicrobium bathyomarinum JL354] Length = 557 Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 D+ RF +I + M E + + L+EE A + I + + + + + Sbjct: 100 ADMVERFNQIGIEMGEEDA--DFDALSEEMAQLQDKIDAVDGW-TLDNQLEIAMEALRCP 156 Query: 70 NSDSEIRD 77 SD+ + + Sbjct: 157 PSDASVEN 164 >gi|282852780|ref|ZP_06262122.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1] gi|282556522|gb|EFB62142.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 224-1] Length = 540 Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+ EI+ M+ ++ KL +S + DQ + ++ + Sbjct: 481 KIEKLEAEEKEIQTEMANPDIAASFEKLGPLQEKLSAVQ---KQLDQANNDWENALDALD 537 Query: 68 DHN 70 + Sbjct: 538 EFE 540 >gi|308172599|ref|YP_003919304.1| ABC transporter ATP-binding protein YfmR [Bacillus amyloliquefaciens DSM 7] gi|307605463|emb|CBI41834.1| putative ABC transporter (ATP-binding protein) YfmR [Bacillus amyloliquefaciens DSM 7] gi|328552361|gb|AEB22853.1| ABC transporter (ATP-binding protein) YfmR [Bacillus amyloliquefaciens TA208] Length = 629 Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 6 HKQICDLKNRFAEIELRMSE-SPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHT 64 +I L+ + +E ++E +L E A + + +L Sbjct: 569 EDKIAGLEEKHQRLEAEIAEAGSDFGKIQELMAEQA------KTAEELEAAMERWTELSL 622 Query: 65 VIGDHNS 71 +I + + Sbjct: 623 MIEELEN 629 >gi|308234746|ref|ZP_07665483.1| putative ABC transporter ATP-binding protein [Gardnerella vaginalis ATCC 14018] gi|311114329|ref|YP_003985550.1| ABC transporter ATP-binding protein [Gardnerella vaginalis ATCC 14019] gi|310945823|gb|ADP38527.1| ABC superfamily ATP binding cassette transporter ABC protein [Gardnerella vaginalis ATCC 14019] Length = 558 Score = 35.9 bits (81), Expect = 8.7, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 I +RF +I M+ + + L EE + I + +D + + + Sbjct: 96 IAQKVDRFNQIGEEMANPDA--DFDALMEEMGKLQTEIDAANGWD-LDSQLEQAMDALQC 152 Query: 69 HNSDS 73 + DS Sbjct: 153 PDPDS 157 >gi|300712756|ref|YP_003738569.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] gi|299126440|gb|ADJ16778.1| Kinetochore-Ndc80 complex, subunit Spc25 [Halalkalicoccus jeotgali B3] Length = 647 Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 9/98 (9%), Positives = 31/98 (31%), Gaps = 1/98 (1%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKK-QEEQDLHTVIGD 68 +L + ++E + + + +E + ++ ++ ++L + + Sbjct: 422 EELVEKIEDLESAVEADEDDEDLLAAQKEVTQLELKRDRLERKQNALAEDIENLEEQLAE 481 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDT 106 + R+ E+ + I +E E Sbjct: 482 RDQLEARREEINAELEELRTRIERIEREAIEAFNKHME 519 >gi|194017733|ref|ZP_03056343.1| chaperone protein DnaK [Bacillus pumilus ATCC 7061] gi|194010633|gb|EDW20205.1| chaperone protein DnaK [Bacillus pumilus ATCC 7061] Length = 612 Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEE 59 +VF + K + DL+ + E ++ ++ +K E + I +K QE Sbjct: 512 LVFTTEKTLKDLEGKIDE--EQVKKANDAKDALKAAIEKGELEDIKAKKDELQTIVQEL 568 >gi|150865855|ref|XP_001385239.2| hypothetical protein PICST_60261 [Scheffersomyces stipitis CBS 6054] gi|149387111|gb|ABN67210.2| predicted protein [Scheffersomyces stipitis CBS 6054] Length = 156 Score = 35.9 bits (81), Expect = 8.8, Method: Composition-based stats. Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 2/73 (2%) Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVER-KR 284 G GGQ +N ++S V++TH+PTGI+V +SQ NR RA ++L +L D+ + Sbjct: 28 KGGRGPGGQKINKSNSKVQLTHLPTGIVVTCQYSRSQESNRKRAREILALKLDDLNNPET 87 Query: 285 MANERSANRKLQI 297 N +RK ++ Sbjct: 88 SRNAVVNDRKTKV 100 >gi|332534248|ref|ZP_08410093.1| hypothetical protein PH505_bd00320 [Pseudoalteromonas haloplanktis ANT/505] gi|332036328|gb|EGI72799.1| hypothetical protein PH505_bd00320 [Pseudoalteromonas haloplanktis ANT/505] Length = 893 Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 12/125 (9%), Positives = 37/125 (29%), Gaps = 11/125 (8%) Query: 17 AEIELRMSESPSVDAYIKLTEEYAAISPI-----------ISKISIYDQKKQEEQDLHTV 65 A++E +++++ Y + A + + + ++ +L + Sbjct: 481 ADLEAQLADAKDWQKYAAAPKRKALLEEVSALVSEECTDPQQRAEQVKALRKRWNELGRL 540 Query: 66 IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125 D ++ QIE+L E E+ + + + + + Sbjct: 541 DTDEEKHQGVQFDEQIELLFAPCRSYFAEQEVQREASKAQRESIINDMHALHLQPTAEDD 600 Query: 126 ALFVG 130 + Sbjct: 601 FDWKQ 605 >gi|257791194|ref|YP_003181800.1| putative ABC transporter ATP-binding protein [Eggerthella lenta DSM 2243] gi|317488071|ref|ZP_07946649.1| ABC transporter [Eggerthella sp. 1_3_56FAA] gi|257475091|gb|ACV55411.1| ABC transporter related [Eggerthella lenta DSM 2243] gi|316912822|gb|EFV34353.1| ABC transporter [Eggerthella sp. 1_3_56FAA] Length = 559 Score = 35.9 bits (81), Expect = 8.9, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + +RF +I M+E + + L E + I + +D + + Sbjct: 96 VKAKIDRFNKIGEEMAEPDA--DFDALMAEMGELQDAIDAANGWD-LDSQLSQAMDALQC 152 Query: 69 HNSD 72 + D Sbjct: 153 PDPD 156 >gi|315221418|ref|ZP_07863339.1| segregation protein SMC [Streptococcus anginosus F0211] gi|315189537|gb|EFU23231.1| segregation protein SMC [Streptococcus anginosus F0211] Length = 1177 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 50/129 (38%), Gaps = 1/129 (0%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGD 68 + + + + ++ ++S++ S+ IK + E A ++ +++ Y+Q ++ +DL ++ Sbjct: 691 LAEQEKQVEDLHTQLSQANSLLEEIKASGEEARLAEQKAQM-AYEQTHKQVEDLSELLAL 749 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALF 128 + L + R E E + + KS ++A A L Sbjct: 750 QERELSREVLPDMAEQKERLVNRLAEIEQEKTETEAEIEQIKSDKDAVQARLDKLTAHLS 809 Query: 129 VGDLFRMYE 137 L R Sbjct: 810 ELRLVRTEL 818 >gi|169841079|ref|ZP_02874192.1| hypothetical protein cdivTM_28268 [candidate division TM7 single-cell isolate TM7a] Length = 65 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Query: 8 QICDLKNRFAEIELRMSESPSV--DAYIKLTEEYAAISPIISKISIYDQKKQEE 59 I +LKN E+E R E+ D ++ + +A ++ + + ++ Sbjct: 9 DIENLKNEINELEKRTFEADFWNTDNSQEILKNISAKKKLLEEYDKLNGLFEDV 62 >gi|169854029|ref|XP_001833692.1| hypothetical protein CC1G_03909 [Coprinopsis cinerea okayama7#130] gi|116505342|gb|EAU88237.1| hypothetical protein CC1G_03909 [Coprinopsis cinerea okayama7#130] Length = 264 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 1/70 (1%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 I ++ ED+ +R SG GGQ +N T++ V++ H PTGI V +S QNR Sbjct: 150 HTQRIVPELKEEDLEESFVRGSGPGGQSINKTENNVQLLHKPTGIRVSCQETRSLSQNRK 209 Query: 268 RAMKVLRARL 277 A K L +L Sbjct: 210 IARKRLLEKL 219 >gi|148543999|ref|YP_001271369.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|184153393|ref|YP_001841734.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227364912|ref|ZP_03848957.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri MM2-3] gi|325682463|ref|ZP_08161980.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri MM4-1A] gi|148531033|gb|ABQ83032.1| ABC transporter related [Lactobacillus reuteri DSM 20016] gi|183224737|dbj|BAG25254.1| ABC transporter ATP-binding component [Lactobacillus reuteri JCM 1112] gi|227070059|gb|EEI08437.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri MM2-3] gi|324978302|gb|EGC15252.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri MM4-1A] Length = 636 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI 51 +++ L + ++E M+E+ Y K+ + ++ I KI Sbjct: 579 DEELDALDQQHQQLENEMAEAA--SDYTKIAKLQKQLNEIQEKIDE 622 >gi|325124408|gb|ADY83931.1| transport protein (ABC superfamily, atp_bind) [Acinetobacter calcoaceticus PHEA-2] Length = 636 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 9 ICDLKNRFAEIELRMSESP----SVDAYIKLTEEYAAISPI-ISKISIYDQKKQ 57 I L+ AE+ ++++ + D K ++ A I + + K+ +D+ +Q Sbjct: 578 IEKLEVEQAELSDKLADGSWFVSNADEATKASQRLAEIEEVLLEKLERWDELEQ 631 >gi|303232237|ref|ZP_07318936.1| ABC transporter, ATP-binding protein [Atopobium vaginae PB189-T1-4] gi|302481647|gb|EFL44708.1| ABC transporter, ATP-binding protein [Atopobium vaginae PB189-T1-4] Length = 699 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 6 HKQICDL-------KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQE 58 K++ ++ R AE+E ++++S + + + + ++ K+S +++ E Sbjct: 631 KKRLREIDAALAAGSARKAELEEKLADSDLYNDKAAFGDVMSEYNALVEKVSALEEEWLE 690 Query: 59 EQD 61 D Sbjct: 691 LSD 693 >gi|219682970|ref|YP_002469353.1| ABC transporter ATP-binding protein [Bifidobacterium animalis subsp. lactis AD011] gi|219620620|gb|ACL28777.1| ATP binding protein of ABC transporter [Bifidobacterium animalis subsp. lactis AD011] Length = 570 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 + RF EI M+ + + L EE + I + +D + + + Sbjct: 95 DVAAKVARFNEIGEEMANPDA--DFDSLMEEMGKLQTEIDAANGWD-LDSQLEQAMDALQ 151 Query: 68 DHNSDS 73 + D+ Sbjct: 152 CPDPDT 157 >gi|189462626|ref|ZP_03011411.1| hypothetical protein BACCOP_03318 [Bacteroides coprocola DSM 17136] gi|189430787|gb|EDU99771.1| hypothetical protein BACCOP_03318 [Bacteroides coprocola DSM 17136] Length = 646 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 2/56 (3%) Query: 9 ICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI-SIYDQKKQEEQDLH 63 I L+ AE+E RM+ KL E++ + IS ++ E ++L Sbjct: 591 IERLEKEVAELEERMATPEGASDM-KLYEQHQQLKKQISDAEEEWENVSLELEELK 645 >gi|124009950|ref|ZP_01694615.1| ABC transporter, ATP-binding protein [Microscilla marina ATCC 23134] gi|123984034|gb|EAY24412.1| ABC transporter, ATP-binding protein [Microscilla marina ATCC 23134] Length = 642 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 7/63 (11%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKI----SIYDQKKQEEQDLH 63 ++ + + EIEL+++++ + KL + + + ++ +++ + +L Sbjct: 580 KVTKSEKKQEEIELKLADNTIYNDPEKLEKTQQEFAKVQEELAAANDAWEELVMKIDELE 639 Query: 64 TVI 66 + Sbjct: 640 AQL 642 >gi|42518549|ref|NP_964479.1| ABC transporter ATPase component [Lactobacillus johnsonii NCC 533] gi|41582834|gb|AAS08445.1| ABC transporter ATPase component [Lactobacillus johnsonii NCC 533] Length = 641 Score = 35.9 bits (81), Expect = 9.0, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+N EI+ M+ ++ KL +S + + +Q + ++ + Sbjct: 582 RIEKLENEEQEIQTEMANPDIAASFEKLGPLQEKLSAVQEQ---LNQANTDWENALEALD 638 Query: 68 DHN 70 + Sbjct: 639 EFE 641 >gi|319789740|ref|YP_004151373.1| SMC domain protein [Thermovibrio ammonificans HB-1] gi|317114242|gb|ADU96732.1| SMC domain protein [Thermovibrio ammonificans HB-1] Length = 894 Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 43/91 (47%), Gaps = 3/91 (3%) Query: 10 CDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ-DLHTVIGD 68 ++ +E + + +L++E A++P+ K+ +++++ + + ++I + Sbjct: 640 ERIREELNRLEQEL--KSFKEKERELSQELKALNPVRDKLRKLQKEEEDGERRIRSLIEE 697 Query: 69 HNSDSEIRDLAQIEVLAIEKEIRELENEINY 99 + + + ++ AI +E++ LE E Sbjct: 698 ASKLKGEIEELRRQIGAIREELKRLEVEKQC 728 >gi|308491580|ref|XP_003107981.1| CRE-RBR-2 protein [Caenorhabditis remanei] gi|308249928|gb|EFO93880.1| CRE-RBR-2 protein [Caenorhabditis remanei] Length = 1451 Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 5/95 (5%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ L R + E +D + T+E + ++ + +D K E ++L ++ Sbjct: 862 QLEQLLQRIDAWRKKAEE--VMDREQEYTKE--DLERVVEEGEEFDIKLTEIEELRKLVE 917 Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102 SE E L+ Sbjct: 918 MKE-WSERARKVTSWTPTSNMENEFDFECKKRLIR 951 >gi|218960598|ref|YP_001740373.1| valyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] gi|167729255|emb|CAO80166.1| valyl-tRNA synthetase [Candidatus Cloacamonas acidaminovorans] Length = 882 Score = 35.9 bits (81), Expect = 9.1, Method: Composition-based stats. Identities = 8/55 (14%), Positives = 22/55 (40%), Gaps = 2/55 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEE 59 KQI L + I+ +++ ++ + + +E + +K+ + E Sbjct: 828 KQIEKLTKELSGIKAKLANPNFLNNAKEEVVAKEKEKFIEVNTKLELLQNLLSEL 882 >gi|322700992|gb|EFY92744.1| nuclear segregation protein (Bfr1), putative [Metarhizium acridum CQMa 102] Length = 478 Score = 35.9 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 15/117 (12%), Positives = 34/117 (29%), Gaps = 1/117 (0%) Query: 5 SHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPII-SKISIYDQKKQEEQDLH 63 S KQI +L+ + +I+ M + + + A + I + Y + Sbjct: 176 SQKQIDELRAKIKDIKDSMEDPEQKALSDQYNKIQAELDTIKAEQDEAYKGISNLRDERS 235 Query: 64 TVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 + + + E +K + E E + + + E Sbjct: 236 KLQAEQQEKYTAIRKLKDEYYGQKKAFQAFEREAREKAKARREAEREQWKKEALKKD 292 >gi|189425595|ref|YP_001952772.1| valyl-tRNA synthetase [Geobacter lovleyi SZ] gi|189421854|gb|ACD96252.1| valyl-tRNA synthetase [Geobacter lovleyi SZ] Length = 897 Score = 35.9 bits (81), Expect = 9.2, Method: Composition-based stats. Identities = 9/59 (15%), Positives = 27/59 (45%), Gaps = 2/59 (3%) Query: 7 KQICDLKNRFAEIELRMSESPSVDAYIK--LTEEYAAISPIISKISIYDQKKQEEQDLH 63 K+I L + ++ VD + +E A ++ + +K ++ ++ ++ ++L Sbjct: 839 KEIAKLDKEIEQFSKKLENPSFVDRAPADIVAKEKAKLADVTAKKAVLEESLEKIRNLK 897 >gi|254883053|ref|ZP_05255763.1| ABC transporter ATP-binding protein [Bacteroides sp. 4_3_47FAA] gi|319643572|ref|ZP_07998192.1| ABC transporter ATP-binding protein [Bacteroides sp. 3_1_40A] gi|254835846|gb|EET16155.1| ABC transporter ATP-binding protein [Bacteroides sp. 4_3_47FAA] gi|317384741|gb|EFV65700.1| ABC transporter ATP-binding protein [Bacteroides sp. 3_1_40A] Length = 647 Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 19/58 (32%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I L+ E+E M+ + + + ++ E +++ Sbjct: 588 EQKIEKLETEIGEVEADMATPEGASDMALYEKHQKLKKDLDQTVEEWETVSMELEEMQ 645 >gi|238853864|ref|ZP_04644228.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 202-4] gi|238833508|gb|EEQ25781.1| ABC transporter, ATP-binding protein [Lactobacillus gasseri 202-4] Length = 643 Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 +I L+ EI+ M+ ++ KL +S + DQ + ++ + Sbjct: 584 KIEKLEAEEKEIQTEMANPEIAASFEKLGPLQEKLSAVQ---KQLDQANNDWENALDALD 640 Query: 68 DHN 70 + Sbjct: 641 EFE 643 >gi|254173858|ref|ZP_04880529.1| hypothetical Bps2 protein [Thermococcus sp. AM4] gi|214032107|gb|EEB72938.1| hypothetical Bps2 protein [Thermococcus sp. AM4] Length = 656 Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 10/83 (12%), Positives = 26/83 (31%), Gaps = 8/83 (9%) Query: 2 VFLSHKQ--ICDLKNRFAEIELR------MSESPSVDAYIKLTEEYAAISPIISKISIYD 53 + + + I LK E+ + M + D ++++ + + + Sbjct: 193 AMIPNLKKEIEQLKKEIKELTQKKNSLMAMIGTDRADKKQEISKLKRNLEKLEKEKESLK 252 Query: 54 QKKQEEQDLHTVIGDHNSDSEIR 76 Q+ +E I + E Sbjct: 253 QEMRELTTSQERIKEEIKQKEAE 275 >gi|71022895|ref|XP_761677.1| hypothetical protein UM05530.1 [Ustilago maydis 521] gi|46101154|gb|EAK86387.1| hypothetical protein UM05530.1 [Ustilago maydis 521] Length = 713 Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%), Gaps = 3/90 (3%) Query: 191 TEASGRVHTSAATVAVLPEA--AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248 T++ + + + + + + + +D+ +R SG GGQ +N + V++TH Sbjct: 572 TDSELELPEWYTSGTYMLQPGSRKYPLTLDEKDLAEKFIRGSGPGGQAINKLSTNVQLTH 631 Query: 249 IPTGI-MVTSSEKSQHQNRLRAMKVLRARL 277 +PTG + +S+ +NR A + + L Sbjct: 632 LPTGTKVTCQETRSRDRNRELARRRMSLTL 661 >gi|194467927|ref|ZP_03073913.1| ABC transporter related [Lactobacillus reuteri 100-23] gi|194452780|gb|EDX41678.1| ABC transporter related [Lactobacillus reuteri 100-23] Length = 636 Score = 35.9 bits (81), Expect = 9.3, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI 51 +++ L + ++E M+E+ Y K+ + ++ I KI Sbjct: 579 DEELDALDQQHQQLENEMAEAA--SDYTKIAKLQKQLNEIQEKIDE 622 >gi|227543426|ref|ZP_03973475.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri CF48-3A] gi|300910093|ref|ZP_07127553.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri SD2112] gi|227186578|gb|EEI66649.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri CF48-3A] gi|300892741|gb|EFK86101.1| ABC superfamily ATP binding cassette transporter, ABC protein [Lactobacillus reuteri SD2112] Length = 636 Score = 35.9 bits (81), Expect = 9.4, Method: Composition-based stats. Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 2/46 (4%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISI 51 +++ L + ++E M+E+ Y K+ + ++ I KI Sbjct: 579 DEELDALDQQHQQLENEMAEAA--SDYTKIAKLQKQLNEIQEKIDE 622 >gi|313236155|emb|CBY11479.1| unnamed protein product [Oikopleura dioica] Length = 262 Score = 35.9 bits (81), Expect = 9.5, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 5/69 (7%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67 Q+ L+ + A++ ++S+ V Y K +E A + + +I + QE + L + Sbjct: 199 QLQVLEEKRAQLRAQLSDRNWVTDYDK--KE-AKLKELNKEIRELKKINQEVERL--IAS 253 Query: 68 DHNSDSEIR 76 + +SD ++ Sbjct: 254 ESSSDKSVK 262 >gi|332030031|gb|EGI69856.1| X-linked retinitis pigmentosa GTPase regulator-like protein [Acromyrmex echinatior] Length = 2956 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 30/74 (40%), Gaps = 7/74 (9%) Query: 4 LSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 +S ++ +L N+ E E +S S ++ +SPI K ++ Q E++ Sbjct: 772 ISDDKLAELINKITEYEELISPSD-------KSKNNGRLSPIEEKFNLEQQYVDLEEEFE 824 Query: 64 TVIGDHNSDSEIRD 77 +D +D Sbjct: 825 KWKIKIENDISQKD 838 >gi|300214576|gb|ADJ78992.1| Chaperone [Lactobacillus salivarius CECT 5713] Length = 863 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R E++ +S + K + I KK E + + ++ Sbjct: 440 KKRLEELQAELS-----NLREKANKLRQRWEDEKLDIQKVSDKKSELDKARHQLEEAENN 494 Query: 73 SEIRDL---AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + +EKE+++LEN + I E+ + G Sbjct: 495 YDLEKAAKLQHATIPQLEKELQQLENSERPKEWMVEESVTDKEIAEVISRMTG 547 >gi|258568904|ref|XP_002585196.1| predicted protein [Uncinocarpus reesii 1704] gi|237906642|gb|EEP81043.1| predicted protein [Uncinocarpus reesii 1704] Length = 2299 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 2 VFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQD 61 + + Q+ + R E+E +S DA K+ I+ + + D Sbjct: 2032 IMVLQDQLQQREGRIEELEHELSLIDK-DAPAKI----KERETEITWLRELLHVR--LDD 2084 Query: 62 LHTVI 66 L +I Sbjct: 2085 LQDII 2089 >gi|227890865|ref|ZP_04008670.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Lactobacillus salivarius ATCC 11741] gi|227867274|gb|EEJ74695.1| ATP-dependent Clp protease, ATP-binding subunit ClpB [Lactobacillus salivarius ATCC 11741] Length = 863 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R E++ +S + K + I KK E + + ++ Sbjct: 440 KKRLEELQAELS-----NLREKANKLRQRWEDEKLDIQKVSDKKSELDKARHQLEEAENN 494 Query: 73 SEIRDL---AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + +EKE+++LEN + I E+ + G Sbjct: 495 YDLEKAAKLQHATIPQLEKELQQLENSERPKEWMVEESVTDKEIAEVISRMTG 547 >gi|187951929|gb|AAI38367.1| Myo18a protein [Mus musculus] Length = 2047 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 6/86 (6%), Positives = 26/86 (30%), Gaps = 1/86 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDLHT 64 +++ L+++ +E M + V E + +++ + ++ Sbjct: 1802 QEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFEKTQVKRLENLASRLKETME 1861 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEI 90 + + + + E + Sbjct: 1862 KLTEERDQRAAAENREKEQNKRLQRQ 1887 >gi|22094119|ref|NP_035716.1| myosin-XVIIIa [Mus musculus] gi|7416032|dbj|BAA93660.1| myosin containing PDZ domain [Mus musculus] gi|56205923|emb|CAI24425.1| myosin XVIIIa [Mus musculus] gi|148680948|gb|EDL12895.1| myosin XVIIIa [Mus musculus] Length = 2035 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 6/86 (6%), Positives = 26/86 (30%), Gaps = 1/86 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDLHT 64 +++ L+++ +E M + V E + +++ + ++ Sbjct: 1790 QEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFEKTQVKRLENLASRLKETME 1849 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEI 90 + + + + E + Sbjct: 1850 KLTEERDQRAAAENREKEQNKRLQRQ 1875 >gi|68489326|ref|XP_711504.1| hypothetical protein CaO19.12943 [Candida albicans SC5314] gi|68489375|ref|XP_711480.1| hypothetical protein CaO19.5488 [Candida albicans SC5314] gi|46432785|gb|EAK92252.1| hypothetical protein CaO19.5488 [Candida albicans SC5314] gi|46432811|gb|EAK92277.1| hypothetical protein CaO19.12943 [Candida albicans SC5314] gi|238882388|gb|EEQ46026.1| conserved hypothetical protein [Candida albicans WO-1] Length = 171 Score = 35.9 bits (81), Expect = 9.6, Method: Composition-based stats. Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVE 281 G GGQ +N T+S V++THIPTG++V + +SQ QNR A + L +L D Sbjct: 46 HGGRGPGGQKINKTNSKVQLTHIPTGMVVSCQATRSQEQNRAIAREKLALKLDDFY 101 >gi|321477811|gb|EFX88769.1| hypothetical protein DAPPUDRAFT_304777 [Daphnia pulex] Length = 450 Score = 35.9 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 16/112 (14%), Positives = 42/112 (37%), Gaps = 4/112 (3%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 M + +QI DL+ R +E ++ S +L +E +++ + + Q Q++ Sbjct: 109 MKSSASQQILDLQKRVHSVEAELALSNG--KAQELAKEKSSLENQLGSLRHQLQASQDKS 166 Query: 61 D--LHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDK 110 + + +I D + + ++ N + L + + + Sbjct: 167 EKTIRMLIADKEELEKSTKKLTETTAKWKSTHEQMCNRNSALNSSVASSNQQ 218 >gi|171914371|ref|ZP_02929841.1| Class I peptide chain release factor [Verrucomicrobium spinosum DSM 4136] Length = 141 Score = 35.9 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 6/101 (5%) Query: 209 EAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRL 267 + + I ED+ +R +G+GGQ +N T S V +TH+PTG+ V E+SQ NR+ Sbjct: 16 HQRMLKLGIREEDLEETFIRGTGAGGQKINKTSSTVVLTHVPTGLEVRCQRERSQSLNRV 75 Query: 268 RAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERIRT 308 A + L ++L + R+ ++ R R R Sbjct: 76 VAREELCSKL-----EERLAAVKLERRNEVEKKKRQNRKRP 111 >gi|150004575|ref|YP_001299319.1| ABC transporter ATP-binding protein [Bacteroides vulgatus ATCC 8482] gi|149932999|gb|ABR39697.1| ABC transporter ATP-binding protein [Bacteroides vulgatus ATCC 8482] Length = 647 Score = 35.9 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 6/58 (10%), Positives = 19/58 (32%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLH 63 ++I L+ E+E M+ + + + ++ E +++ Sbjct: 588 EQKIEKLETEIGEVEADMATPEGASDMALYEKHQKLKKDLDQTVEEWETVSMELEEMQ 645 >gi|154249899|ref|YP_001410724.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1] gi|154153835|gb|ABS61067.1| chromosome segregation protein SMC [Fervidobacterium nodosum Rt17-B1] Length = 1164 Score = 35.9 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 9/68 (13%), Positives = 32/68 (47%), Gaps = 8/68 (11%) Query: 2 VFLSHKQICDLKNRFAEIELRM-----SESPSVDAYIKLTEEYAAISPIISKISIYDQKK 56 + + +++ +L N ++E ++ + ++D Y + +EY + + + + K Sbjct: 943 IDVEPEKLDELANEIKDLENKLKMLGAVDLTAIDEYKAIEQEYNEL---LKQKQDLEDAK 999 Query: 57 QEEQDLHT 64 ++ ++L Sbjct: 1000 KKLEELIE 1007 >gi|125987842|sp|Q9JMH9|MY18A_MOUSE RecName: Full=Myosin-XVIIIa; AltName: Full=Molecule associated with JAK3 N-terminus; Short=MAJN; AltName: Full=Myosin containing a PDZ domain gi|56205924|emb|CAI24426.1| myosin XVIIIa [Mus musculus] Length = 2050 Score = 35.9 bits (81), Expect = 9.7, Method: Composition-based stats. Identities = 6/86 (6%), Positives = 26/86 (30%), Gaps = 1/86 (1%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEY-AAISPIISKISIYDQKKQEEQDLHT 64 +++ L+++ +E M + V E + +++ + ++ Sbjct: 1790 QEKLQALQSQVEFLEQSMVDKSLVSRQEAKIRELETRLEFEKTQVKRLENLASRLKETME 1849 Query: 65 VIGDHNSDSEIRDLAQIEVLAIEKEI 90 + + + + E + Sbjct: 1850 KLTEERDQRAAAENREKEQNKRLQRQ 1875 >gi|293610229|ref|ZP_06692530.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292827461|gb|EFF85825.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 640 Score = 35.9 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 26/54 (48%), Gaps = 5/54 (9%) Query: 9 ICDLKNRFAEIELRMSESP----SVDAYIKLTEEYAAISPI-ISKISIYDQKKQ 57 I L+ AE+ ++++ + D K ++ A I + + K+ +D+ +Q Sbjct: 582 IEKLEVEQAELSDKLADGSWFVSNADEATKASQRLAEIEEVLLEKLERWDELEQ 635 >gi|307150658|ref|YP_003886042.1| hypothetical protein Cyan7822_0738 [Cyanothece sp. PCC 7822] gi|306980886|gb|ADN12767.1| conserved hypothetical protein [Cyanothece sp. PCC 7822] Length = 255 Score = 35.9 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 35/90 (38%), Gaps = 16/90 (17%) Query: 5 SHKQICDLKNRFAEIEL---------RMSESPSV--DAYIKLTEEYAAISPIISKISIYD 53 + + +L++RF ++E ++ S K+ + ++ +I+ + ++ Sbjct: 155 PREDVIELRSRFNQLEETVKELQDKLDLNNPDSWSTKQEQKIQKLRQDLASLIANLEQFE 214 Query: 54 -----QKKQEEQDLHTVIGDHNSDSEIRDL 78 Q +Q ++ + I DS+ Sbjct: 215 ARNKAQHEQLSREAKSAIAQLTEDSQFLAH 244 >gi|109896443|ref|YP_659698.1| ABC transporter related [Pseudoalteromonas atlantica T6c] gi|109698724|gb|ABG38644.1| ABC transporter related protein [Pseudoalteromonas atlantica T6c] Length = 650 Score = 35.9 bits (81), Expect = 9.8, Method: Composition-based stats. Identities = 11/75 (14%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 6 HKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ----D 61 K++ +L+ + IE +M++ +A K A + +++ + ++E + D Sbjct: 578 EKKMAELEAKLEGIEQKMADPDIYNADKK-----AELKVLLADQASCKVAQEEAEMLWLD 632 Query: 62 LHTVIGDHNSDSEIR 76 I ++ + + Sbjct: 633 AQEQIEAKQAEFDAQ 647 >gi|332360706|gb|EGJ38515.1| ABC superfamily ATP binding cassette transporter, ABC protein [Streptococcus sanguinis SK49] Length = 622 Score = 35.9 bits (81), Expect = 9.9, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 6/50 (12%) Query: 8 QICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAI----SPIISKISIYD 53 I L+ R +EIE M E+ + +L+E + ++ K Y+ Sbjct: 568 DIEALEERISEIEAAMQENG--SDFARLSELQQELDEQNEKLLEKYERYE 615 >gi|123427723|ref|XP_001307315.1| hypothetical protein [Trichomonas vaginalis G3] gi|121888937|gb|EAX94385.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 578 Score = 35.9 bits (81), Expect = 10.0, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 36/74 (48%), Gaps = 16/74 (21%) Query: 7 KQICDLKNRFAEIELRMSESP----SVDAYIKL----TEEYAAIS--------PIISKIS 50 K++ DL+ R+ ++ +++SE+P D Y+ L +E + P+ +++ Sbjct: 198 KKVQDLEKRYDDLLVKLSENPQQREFYDKYMSLQHQYMQERTELEQRLNKEVAPLKAQVD 257 Query: 51 IYDQKKQEEQDLHT 64 Y Q+ +E++ Sbjct: 258 SYVQQLNQEKEAQK 271 >gi|90961840|ref|YP_535756.1| chaperone [Lactobacillus salivarius UCC118] gi|90821034|gb|ABD99673.1| Chaperone [Lactobacillus salivarius UCC118] Length = 863 Score = 35.9 bits (81), Expect = 10.0, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%) Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72 K R E++ +S + K + I KK E + + ++ Sbjct: 440 KKRLEELQAELS-----NLREKANKLRQRWEDEKLDIQKVSDKKSELDKARHQLEEAENN 494 Query: 73 SEIRDL---AQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGG 122 ++ + +EKE+++LEN + I E+ + G Sbjct: 495 YDLEKAAKLQHATIPQLEKELQQLENSERPKEWMVEESVTDKEIAEVISRMTG 547 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.122 0.330 Lambda K H 0.267 0.0374 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,532,622,837 Number of Sequences: 14124377 Number of extensions: 125101271 Number of successful extensions: 706067 Number of sequences better than 10.0: 8545 Number of HSP's better than 10.0 without gapping: 5074 Number of HSP's successfully gapped in prelim test: 3471 Number of HSP's that attempted gapping in prelim test: 668114 Number of HSP's gapped (non-prelim): 21477 length of query: 357 length of database: 4,842,793,630 effective HSP length: 140 effective length of query: 217 effective length of database: 2,865,380,850 effective search space: 621787644450 effective search space used: 621787644450 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 81 (35.9 bits)