RPSBLAST alignment for GI: 254780874 and conserved domain: TIGR00019

>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift. Length = 360

 Score =  442 bits (1139), Expect = e-125
 Identities = 194/351 (55%), Positives = 265/351 (75%), Gaps = 8/351 (2%)

Query: 12  LKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67
           L  R+ E+E  +S  P V    D   KL++EY+ +  I+     Y Q +++ ++   ++ 
Sbjct: 12  LLERYEELEALLS-DPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEIL- 69

Query: 68  DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127
              SD E+R++A+ E+  +E++I ELE ++  LLLPKD +D+K+ ILEIRAGTGG EAA+
Sbjct: 70  -EESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAI 128

Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187
           F GDLFRMY RYA  + WKVE+LS+++ + GGYKE++A I G GV+SR+KFESGVHRVQR
Sbjct: 129 FAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQR 188

Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247
           VP TE+ GR+HTSAATVAV+PE  E++VDI   D+RIDT R+SG+GGQHVNTTDSAVRIT
Sbjct: 189 VPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRIT 248

Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306
           H+PTGI+V    E+SQH+N+ +AMKVLRARLY+ E+++    +++ RK Q+GSGDRSERI
Sbjct: 249 HLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERI 308

Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
           RTYNF Q R+TDHRINLTLYKL+ VL+G +D++I  L+   QA+ + + SE
Sbjct: 309 RTYNFPQNRVTDHRINLTLYKLDEVLEGDLDELIEALIAEDQAQQLAALSE 359