RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780874|ref|YP_003065287.1| peptide chain release factor 1
[Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
>gnl|CDD|179074 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 558 bits (1440), Expect = e-159
Identities = 206/354 (58%), Positives = 272/354 (76%), Gaps = 11/354 (3%)
Query: 11 DLKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV- 65
L+ R+ E+E +S P V + KL++EYA + PI+ Y + KQ ++DL
Sbjct: 10 ALEERYEELEALLS-DPEVISDQKRFRKLSKEYAELEPIVEA---YREYKQAQEDLEEAK 65
Query: 66 -IGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSE 124
+ + SD E+R++A+ E+ +E+ + ELE E+ LLLPKD +DDK+ ILEIRAGTGG E
Sbjct: 66 EMLEEESDPEMREMAKEELKELEERLEELEEELKILLLPKDPNDDKNVILEIRAGTGGDE 125
Query: 125 AALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHR 184
AALF GDLFRMY RYA + WKVE+LS+S+ + GGYKE++A ISG GV+S++KFESGVHR
Sbjct: 126 AALFAGDLFRMYSRYAERQGWKVEILSASEGELGGYKEVIAEISGDGVYSKLKFESGVHR 185
Query: 185 VQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244
VQRVPATE+ GR+HTSAATVAVLPEA E++V+I +D+RIDT R+SG+GGQHVNTTDSAV
Sbjct: 186 VQRVPATESQGRIHTSAATVAVLPEAEEVEVEINPKDLRIDTFRSSGAGGQHVNTTDSAV 245
Query: 245 RITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRS 303
RITH+PTGI+V E+SQH+N+ +AMKVLRARLYD ER++ E +A RK Q+GSGDRS
Sbjct: 246 RITHLPTGIVVECQDERSQHKNKAKAMKVLRARLYDAERQKAQAEEAATRKSQVGSGDRS 305
Query: 304 ERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
ERIRTYNF QGR+TDHRINLTLYKL+ V++G +D++I+ L+ QA+ + + E
Sbjct: 306 ERIRTYNFPQGRVTDHRINLTLYKLDEVMEGDLDELIDALIAEDQAEKLAALGE 359
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift.
Length = 360
Score = 442 bits (1139), Expect = e-125
Identities = 194/351 (55%), Positives = 265/351 (75%), Gaps = 8/351 (2%)
Query: 12 LKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIG 67
L R+ E+E +S P V D KL++EY+ + I+ Y Q +++ ++ ++
Sbjct: 12 LLERYEELEALLS-DPEVISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEIL- 69
Query: 68 DHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAAL 127
SD E+R++A+ E+ +E++I ELE ++ LLLPKD +D+K+ ILEIRAGTGG EAA+
Sbjct: 70 -EESDPEMREMAKEELEELEEKIEELEEQLKVLLLPKDPNDEKNVILEIRAGTGGDEAAI 128
Query: 128 FVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQR 187
F GDLFRMY RYA + WKVE+LS+++ + GGYKE++A I G GV+SR+KFESGVHRVQR
Sbjct: 129 FAGDLFRMYSRYAESKGWKVEILSANETELGGYKEVIAEIKGDGVYSRLKFESGVHRVQR 188
Query: 188 VPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRIT 247
VP TE+ GR+HTSAATVAV+PE E++VDI D+RIDT R+SG+GGQHVNTTDSAVRIT
Sbjct: 189 VPVTESQGRIHTSAATVAVMPELEEVEVDINPADLRIDTFRSSGAGGQHVNTTDSAVRIT 248
Query: 248 HIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSERI 306
H+PTGI+V E+SQH+N+ +AMKVLRARLY+ E+++ +++ RK Q+GSGDRSERI
Sbjct: 249 HLPTGIVVECQDERSQHKNKDKAMKVLRARLYEAEQEKQQAAQASTRKSQVGSGDRSERI 308
Query: 307 RTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
RTYNF Q R+TDHRINLTLYKL+ VL+G +D++I L+ QA+ + + SE
Sbjct: 309 RTYNFPQNRVTDHRINLTLYKLDEVLEGDLDELIEALIAEDQAQQLAALSE 359
>gnl|CDD|179072 PRK00578, prfB, peptide chain release factor 2; Validated.
Length = 367
Score = 249 bits (638), Expect = 9e-67
Identities = 130/344 (37%), Positives = 194/344 (56%), Gaps = 22/344 (6%)
Query: 12 LKNRFAEIELRMSESPSV----DAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVI- 66
LK R E+E + P + K+T+E +++ +K+ ++ +Q DL ++
Sbjct: 28 LKERLEELEAEAED-PDFWNDQERAQKVTKELSSLK---AKLDTLEELRQRLDDLEELLE 83
Query: 67 -GDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEA 125
+ D E A+ E+ A+EK++ LE E L D + IL I AG GG+EA
Sbjct: 84 LAEEEDDEETLAEAEAELKALEKKLAALELE----RLLSGEYDANNAILTIHAGAGGTEA 139
Query: 126 ALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRV 185
+ L RMY R+A +KVEVL S+ ++ G K I G + +K E+GVHR+
Sbjct: 140 QDWASMLLRMYLRWAERHGFKVEVLDYSEGEEAGIKSATFKIKGPYAYGYLKSETGVHRL 199
Query: 186 QRVPATEASGRVHTSAATVAVLPEA-AEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244
R+ +++GR HTS A+V V PE I+++I +D+RIDT R+SG+GGQHVN TDSAV
Sbjct: 200 VRISPFDSAGRRHTSFASVEVYPEVDDTIEIEINPKDLRIDTYRSSGAGGQHVNKTDSAV 259
Query: 245 RITHIPTGIMVTS-SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGD 301
RITHIPTGI+V +E+SQHQN+ AMK+L+A+LY++E ++ A E+ A + K +IG G
Sbjct: 260 RITHIPTGIVVQCQNERSQHQNKASAMKMLKAKLYELELEKRAAEKDALKGEKKEIGWGS 319
Query: 302 RSERIRTYNFSQ-GRITDHRINLTLYKLEYVLQGYIDDIINPLL 344
+IR+Y + D R + VL G +D I L
Sbjct: 320 ---QIRSYVLHPYQMVKDLRTGYETGNTQAVLDGDLDGFIEAYL 360
>gnl|CDD|161667 TIGR00020, prfB, peptide chain release factor 2. In many but not
all taxa, there is a conserved real translational
frameshift at a TGA codon. RF-2 helps terminate
translation at TGA codons and can therefore regulate its
own production by readthrough when RF-2 is insufficient.
There is a Pfam model called "RF-1" for the superfamily
of RF-1, RF-2, mitochondrial, RF-H, etc.
Length = 364
Score = 229 bits (585), Expect = 9e-61
Identities = 125/342 (36%), Positives = 188/342 (54%), Gaps = 14/342 (4%)
Query: 12 LKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTV--IGDH 69
K R E+E M + + + S + + + ++ K +DL + +
Sbjct: 28 KKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVE 87
Query: 70 NSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFV 129
D E + E+ A+EK++ ELE + D + L I+AG GG+EA +
Sbjct: 88 EDDEETFNELDAELKALEKKLAELELRT----MLSGEYDANNAYLTIQAGAGGTEAQDWA 143
Query: 130 GDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVP 189
L+RMY R+A R +KVE++ S+ ++ G K + I G + +K E GVHR+ R+
Sbjct: 144 SMLYRMYLRWAERRGFKVEIIDYSEGEEAGIKSVTILIKGPYAYGYLKSEQGVHRLVRIS 203
Query: 190 ATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITH 248
+A+GR HTS A+V V+PE + ID++I ED+RIDT RASG+GGQHVN TDSAVRITH
Sbjct: 204 PFDANGRRHTSFASVFVMPEVDDDIDIEIKPEDLRIDTYRASGAGGQHVNKTDSAVRITH 263
Query: 249 IPTGIMVTS-SEKSQHQNRLRAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSER 305
IPTGI+V +++SQH+N+ AMKVL+A+LY++E ++ E+ A K +IG G +
Sbjct: 264 IPTGIVVQCQNDRSQHKNKDSAMKVLKAKLYELEMEKEQAEKDAKEGEKSEIGWGS---Q 320
Query: 306 IRTYNFS-QGRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346
IR+Y + D R ++ VL G ID I L
Sbjct: 321 IRSYVLHPYSMVKDLRTGYETGNVQAVLDGDIDQFIEAYLKW 362
>gnl|CDD|168914 PRK07342, PRK07342, peptide chain release factor 2; Provisional.
Length = 339
Score = 183 bits (465), Expect = 7e-47
Identities = 114/284 (40%), Positives = 163/284 (57%), Gaps = 20/284 (7%)
Query: 34 KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93
KL E + I+ I+ +Q + +L +G+ D I V EK IR+L
Sbjct: 17 KLMRERQQLDDSINGINHLEQTLNDNIEL-IAMGEEEGDKSI-------VEDAEKTIRDL 68
Query: 94 ENEINY----LLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEV 149
++EI+ LL + D + + LE+ AG GG+E+ + L RMY R+A + KVEV
Sbjct: 69 KDEIDRRQIDALLSGEADANDT-YLEVHAGAGGTESQDWASMLLRMYTRWAERQGRKVEV 127
Query: 150 LSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE 209
L D ++ G K + G + +K ESGVHR+ R+ +++ R HTS A++ V P
Sbjct: 128 LEVHDGEEAGIKSATILVKGHNAYGWLKTESGVHRLVRISPYDSNARRHTSFASIWVYPV 187
Query: 210 AAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRL 267
+ I+VD+ D+RIDT R+SG+GGQHVNTTDSAVRITHIPTGI+V E+SQH+NR
Sbjct: 188 IDDNIEVDVNESDVRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIVVQCQQERSQHKNRA 247
Query: 268 RAMKVLRARLYDVERKRMANERSANR--KLQIGSGDRSERIRTY 309
+A +LRARLY+ E K+ +A K IG G +IR+Y
Sbjct: 248 KAWSMLRARLYEEELKKREEATNAAAASKTDIGWG---HQIRSY 288
>gnl|CDD|180152 PRK05589, PRK05589, peptide chain release factor 2; Provisional.
Length = 325
Score = 181 bits (460), Expect = 3e-46
Identities = 103/273 (37%), Positives = 162/273 (59%), Gaps = 19/273 (6%)
Query: 86 IEKEIRELENEINYL----LLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAA 141
I E++ ++ EI+ LL + D + + IL + +G GG++A + L RMY R+A
Sbjct: 58 IISEVKNIKEEIDRFKIETLLSGEYDRNNA-ILTLHSGVGGTDAQDWTEMLLRMYTRWAE 116
Query: 142 LRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSA 201
+ +KVE++ + D+ G K + I+G + +K E G+HR+ R+ A+G+ TS
Sbjct: 117 KKGYKVEIIDLLEGDEAGIKSVTLKITGEFAYGYLKAEKGIHRLVRISPFNANGKRQTSF 176
Query: 202 ATVAVLPE-AAEIDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVTS-SE 259
A+V VLPE + D++I ED++IDT RA G+GGQHVN T+SAVRITHIPTGI+V +E
Sbjct: 177 ASVEVLPELTDDQDIEIRSEDLKIDTYRAGGAGGQHVNKTESAVRITHIPTGIVVQCQNE 236
Query: 260 KSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSGDRSE-----RIRTYNFSQ- 313
+SQH N+ AMK+L+++L VE K ER+ K++ +G+ + +IR+Y F
Sbjct: 237 RSQHSNKETAMKMLKSKL--VELK----ERAHKEKIEDLTGELKDMGWGSQIRSYVFHPY 290
Query: 314 GRITDHRINLTLYKLEYVLQGYIDDIINPLLTA 346
+ DHR + ++ V+ G ID+ I L
Sbjct: 291 NLVKDHRTGVETSNVDSVMDGDIDNFITQYLKG 323
>gnl|CDD|75726 PRK06746, PRK06746, peptide chain release factor 2; Provisional.
Length = 326
Score = 172 bits (437), Expect = 1e-43
Identities = 114/312 (36%), Positives = 177/312 (56%), Gaps = 13/312 (4%)
Query: 38 EYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEI 97
E A+ ++ K D+ + + H ++ + D ++ + + EV + +E+ E E +
Sbjct: 19 EANALKDMVGKFRQLDETFENLEITHELLKEE-YDEDLHEELESEVKGLIQEMNEYELQ- 76
Query: 98 NYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDD 157
LL D D + ILE+ G GG+E+ + L RMY R+A R +KVE + D+
Sbjct: 77 ---LLLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYTRWAEKRGFKVETVDYLPGDE 133
Query: 158 GGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPE-AAEIDVD 216
G K + I G + +K E GVHR+ R+ ++SGR HTS + V+PE E++++
Sbjct: 134 AGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVSCEVVPEFNDEVEIE 193
Query: 217 IPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRA 275
+ ED++IDT RASG+GGQHVNTTDSAVRITH PT +VT SE+SQ +NR AMK+L+A
Sbjct: 194 VRTEDLKIDTYRASGAGGQHVNTTDSAVRITHTPTNTVVTCQSERSQIKNREHAMKMLKA 253
Query: 276 RLYD--VERKRMANERSANRKLQIGSGDRSERIRTYNFSQ-GRITDHRINLTLYKLEYVL 332
+LY +E ++ + + +IG G +IR+Y F + DHR N + ++ V+
Sbjct: 254 KLYQKKLEEQQAELDEIRGEQKEIGWG---SQIRSYVFHPYSLVKDHRTNTEVGNVQAVM 310
Query: 333 QGYIDDIINPLL 344
G ID I+ L
Sbjct: 311 DGEIDPFIDAYL 322
>gnl|CDD|136970 PRK08787, PRK08787, peptide chain release factor 2; Provisional.
Length = 313
Score = 166 bits (422), Expect = 7e-42
Identities = 99/243 (40%), Positives = 138/243 (56%), Gaps = 7/243 (2%)
Query: 108 DDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATI 167
D + ++I+AG GG+EA + L RMY R+A R WK E++ S + G K I
Sbjct: 63 DGANAFVDIQAGAGGTEAQDWAEILLRMYLRWAESRGWKTELMEVSGGEVAGIKSATVRI 122
Query: 168 SGRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAE-IDVDIPLEDIRIDT 226
G + +K E GVHR+ R ++ R HTS +V V PE + I++DI D+R D
Sbjct: 123 EGEYAYGWLKTEIGVHRLVRKSPFDSDNRRHTSFTSVFVSPEVDDNIEIDINPADLRTDV 182
Query: 227 MRASGSGGQHVNTTDSAVRITHIPTGIMVT-SSEKSQHQNRLRAMKVLRARLYDVERKRM 285
R+SG+GGQHVN T+SAVRITHIPT +V + +SQHQNR AMK+L A+LY++E ++
Sbjct: 183 YRSSGAGGQHVNKTESAVRITHIPTNTVVACQTGRSQHQNRDNAMKMLAAKLYELEVQKR 242
Query: 286 ANERSA--NRKLQIGSGDRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPL 343
E+ A K IG G +IR Y Q RI D R + + VL G +D+ +
Sbjct: 243 NAEKDALEATKSDIGWG---SQIRNYVLDQSRIKDLRTGIERSDTQKVLDGDLDEFVEAS 299
Query: 344 LTA 346
L A
Sbjct: 300 LKA 302
>gnl|CDD|132116 TIGR03072, release_prfH, putative peptide chain release factor H.
Members of this protein family are bacterial proteins
homologous to peptide chain release factors 1 (RF-1,
product of the prfA gene), and 2 (RF-2, product of the
prfB gene). The member from Escherichia coli K-12,
designated prfH, appears to be a pseudogene. This class
I release factor is always found as the downstream gene
of a two-gene operon.
Length = 200
Score = 99.1 bits (247), Expect = 1e-21
Identities = 57/186 (30%), Positives = 91/186 (48%), Gaps = 14/186 (7%)
Query: 114 LEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDND-DGGYKEIVATISGRG- 171
L++ + G +E L V R AA R +VEVL + G + + ++ G
Sbjct: 3 LQLSSAQGPAECCLAVAKALERLTREAAARGVRVEVLEQEPGEVPGTLRSALVSLDGEAA 62
Query: 172 -VFSRMKFESGVHRVQRVPATEASGRVH--TSAATVAVLPEAAEIDVDIPLEDIRIDTMR 228
+ ++E + + P R + + EA E ++IR +T+R
Sbjct: 63 AALAD-RWEGTLLWICPSPYRPHHRRKNWFIGVQRFSASEEATE-------DEIRFETLR 114
Query: 229 ASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYDVERKRMAN 287
+SG GGQHVN T+SAVR TH+ +GI V SE+SQH N+ A +L RL D+++++ A
Sbjct: 115 SSGPGGQHVNKTESAVRATHLASGISVKVQSERSQHANKRLATLLLAVRLADLQQEQAAA 174
Query: 288 ERSANR 293
R+ R
Sbjct: 175 LRAERR 180
>gnl|CDD|181271 PRK08179, prfH, peptide chain release factor-like protein;
Reviewed.
Length = 200
Score = 91.3 bits (227), Expect = 3e-19
Identities = 53/197 (26%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 113 ILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIV--ATISGR 170
+L++ + G +E L V + AA + +V VL + + G Y + + A +S
Sbjct: 3 LLQLSSAQGPAECCLAVAKALERLLKEAARQGVRVTVL---ETETGRYPDTLRSALVSLD 59
Query: 171 G----VFSRMKFESGVHRVQRVPATEASGR------VHTSAATVAVLPEAAEIDVDIPLE 220
G + + + + P GR + +A +
Sbjct: 60 GDNAEALAE-SWCGTIQWICPSPYRPHHGRKNWFVGIGRFSADEEEQSD----------- 107
Query: 221 DIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSSEKSQHQNRLRAMKVLRARLYD 279
+IR +T+R+SG GGQHVN TDSAVR TH+ +GI V SE+SQH N+ A ++ +L
Sbjct: 108 EIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLLIAWKLEQ 167
Query: 280 VERKRMANERSANRKLQ 296
++++ A +S R
Sbjct: 168 QQQEQSAALKSQRRMFH 184
>gnl|CDD|181730 PRK09256, PRK09256, hypothetical protein; Provisional.
Length = 138
Score = 45.1 bits (108), Expect = 3e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 214 DVDIPLEDIRIDTMRASGSGGQHVNTTDSAV 244
+ IP ++ +RASG GGQ+VN +AV
Sbjct: 7 RLVIPENELEWRFIRASGPGGQNVNKVSTAV 37
>gnl|CDD|180249 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 31.1 bits (71), Expect = 0.50
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 18 EIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRD 77
IE + E S + KL +S + K+ Y K ++ + S E+
Sbjct: 32 HIE-DLKEELSNERLRKLRSLLTKLSEALDKLRSYLPKLNPLREEKKKV-SVKSLEELIK 89
Query: 78 LAQIEVLAIEKEIRELENEIN 98
+ E+ IEKEI+ELE EI+
Sbjct: 90 DVEEELEKIEKEIKELEEEIS 110
Score = 28.0 bits (63), Expect = 4.4
Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 14/85 (16%)
Query: 13 KNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSD 72
K F +EL +PS + ++ EE I ++E + L + +
Sbjct: 199 KLGFERLELEEEGTPS-ELIREIKEELEEI-------------EKERESLLEELKELAKK 244
Query: 73 SEIRDLAQIEVLAIEKEIRELENEI 97
LA E L IE E E ++
Sbjct: 245 YLEELLALYEYLEIELERAEALSKF 269
>gnl|CDD|117769 pfam09216, Pfg27, Pfg27. Members of this family are essential for
gametocytogenesis in Plasmodium falciparum. They contain
a fold composed of two pseudo dyad-related repeats of
the helix-turn-helix motif, serving as a platform for
RNA and Src homology-3 (SH3) binding.
Length = 186
Score = 30.4 bits (68), Expect = 0.68
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 37 EEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENE 96
E +A +SP I K+ D + D ++ + D E + A + ++I + +R+ +N
Sbjct: 6 ETHAPLSPRIRKVG--DIEFHACSDYIYLLMTLSKDPEKFNYALKDRVSIRRYVRKNQNR 63
Query: 97 INYLLLPKDTDDD 109
NY L+ ++ D+
Sbjct: 64 YNYFLIEEEVQDN 76
>gnl|CDD|180077 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 30.4 bits (70), Expect = 0.69
Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
Query: 54 QKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLL 102
Q K++ +D +I +E+++L + E+ A+E E+ ELE E+ LLL
Sbjct: 60 QAKRKGEDAEALI------AEVKELKE-EIKALEAELDELEAELEELLL 101
>gnl|CDD|178498 PLN02910, PLN02910, polygalacturonate
4-alpha-galacturonosyltransferase.
Length = 657
Score = 30.3 bits (68), Expect = 0.70
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 13/81 (16%)
Query: 22 RMSESPSVDAYIKLTEE-------YAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSE 74
R ESP+ D+ +KL + YA I+ + ++Y ++ ++ IG+ SD+E
Sbjct: 188 RDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAE 247
Query: 75 I------RDLAQIEVLAIEKE 89
+ + A VL+I K+
Sbjct: 248 LHSSALDQAKAMGHVLSIAKD 268
>gnl|CDD|182518 PRK10525, PRK10525, cytochrome o ubiquinol oxidase subunit II;
Provisional.
Length = 315
Score = 29.0 bits (65), Expect = 2.1
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 155 NDDGGYKEIVATISGRGVFSRMKF 178
N+ G Y I A+ SG G FS MKF
Sbjct: 198 NEPGTYDGISASYSGPG-FSGMKF 220
>gnl|CDD|130500 TIGR01433, CyoA, cytochrome o ubiquinol oxidase subunit II. This
enzyme catalyzes the oxidation of ubiquinol with the
concomitant reduction of molecular oxygen to water. This
acts as the terminal electron acceptor in the
respiratory chain. Subunit II is responsible for binding
and oxidation of the ubiquinone substrate. This sequence
is closely related to QoxA, which oxidizes quinol in
gram positive bacteria but which is in complex with
subunits which utilize cytochromes a in the reduction of
molecular oxygen. Slightly more distantly related is
subunit II of cytochrome c oxidase which uses cyt. c as
the oxidant.
Length = 226
Score = 28.6 bits (64), Expect = 2.2
Identities = 13/24 (54%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 155 NDDGGYKEIVATISGRGVFSRMKF 178
N+ G Y I A SG G FS MKF
Sbjct: 186 NEPGVYDGISANYSGPG-FSGMKF 208
>gnl|CDD|162469 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity
(type V). These P-type ATPases form a distinct clade
but the substrate of their pumping activity has yet to
be determined. This clade has been designated type V in.
Length = 1054
Score = 28.5 bits (64), Expect = 2.8
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
Query: 39 YAAISPIISKISI----YDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIE 87
Y+ +S SI Y +KQ Q L ++ S IR+ + + + E
Sbjct: 195 YSLCIVFMSSTSISLSVYQIRKQM-QRLRDMVHKPQSVIVIRNGKWVTIASDE 246
>gnl|CDD|117126 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 28.1 bits (62), Expect = 3.7
Identities = 46/222 (20%), Positives = 82/222 (36%), Gaps = 30/222 (13%)
Query: 34 KLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDHNSDSEIRDLAQIEVLAIEKEIREL 93
++ ++ A ++ I K+ ++ E+ + + + D ++ +RD A + EI L
Sbjct: 368 RVAKKVADMTAEIEKLKKRHARRMEKFNRTSALKD--AEQRLRDAAA-DPADTGSEIWRL 424
Query: 94 ENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYAALRKWKVEVLSSS 153
E + DT+DD R G +A V D+ R E + K V S
Sbjct: 425 EGRLEI-----DTEDD-----SSRQGPREHKAKYKVDDIVREVE--KSWGKPIVPEPDVS 472
Query: 154 DNDDGGYKEIV----ATISG----------RGVFSRMKFESGVHRVQRVPATEASGRVHT 199
+ GG E + + I G + + + PA ASG+
Sbjct: 473 CVEKGGLLEKIEPEPSLIIGDSDIDMGHTDSHLLDQFNTGGTTFQTASTPAPNASGQATP 532
Query: 200 SAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTTD 241
+A VA A +D+++ D + A+G G V
Sbjct: 533 TATGVASPQPPAGLDINMDDGDAE-ASATAAGETGDWVMVNT 573
>gnl|CDD|163253 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 27.7 bits (62), Expect = 4.4
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 170 RGVFSRMKFESGVHRVQRV---PATEASGRVHTSAATVAVLP---EAAEIDVD 216
RG++ +M F G RV + P A GRV +TV +LP + A D+D
Sbjct: 297 RGLWYKMSFFEGSARVPLMVHAPGRFAPGRVAAPVSTVDLLPTLVDLAGGDMD 349
>gnl|CDD|180129 PRK05561, PRK05561, DNA topoisomerase IV subunit A; Validated.
Length = 742
Score = 27.4 bits (62), Expect = 6.5
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 76 RDLAQIEVLAIEKEIRELENEINYL 100
R LA++E + I KE EL EI L
Sbjct: 432 RRLAKLEEIEIRKEQDELRKEIAEL 456
>gnl|CDD|166661 PLN03020, PLN03020, low-temperature-induced protein; Provisional.
Length = 556
Score = 26.9 bits (59), Expect = 8.4
Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 38 EYAAISPIIS---KISIYDQKKQEEQDLHTVIGDHN 70
E I+PI+S K++I D+ +Q H+
Sbjct: 237 EEVGITPILSSFDKMNIQDEPEQPFATEDLPTRPHD 272
>gnl|CDD|162681 TIGR02068, cya_phycin_syn, cyanophycin synthetase. Cyanophycin
synthesis is analogous to polyhydroxyalkanoic acid (PHA)
biosynthesis, except that PHA polymers lack nitrogen and
may be made under nitrogen-limiting conditions.
Length = 864
Score = 27.1 bits (60), Expect = 8.5
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 169 GRGVFSRMKFESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIR--IDT 226
G V +R E + R+ +P T +A + AA + +P+E IR I T
Sbjct: 654 GYIVIARGGDEVAIARIAAIPLTMGGRVAFQIENALAAV--AAAWALGVPIELIRAGIRT 711
Query: 227 MRASGS 232
A +
Sbjct: 712 FDADAA 717
>gnl|CDD|128711 smart00434, TOP4c, DNA Topoisomerase IV. Bacterial DNA
topoisomerase IV, GyrA, ParC.
Length = 445
Score = 26.8 bits (60), Expect = 9.0
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 2/33 (6%)
Query: 75 IRDLAQIEVLAIEKEIRELENEINYL--LLPKD 105
+R L ++EV +EKE++ELE EI L +L +
Sbjct: 409 LRRLTKLEVEKLEKELKELEKEIEDLEKILASE 441
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.316 0.132 0.362
Gapped
Lambda K H
0.267 0.0780 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,788,623
Number of extensions: 380405
Number of successful extensions: 840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 814
Number of HSP's successfully gapped: 44
Length of query: 357
Length of database: 5,994,473
Length adjustment: 94
Effective length of query: 263
Effective length of database: 3,963,321
Effective search space: 1042353423
Effective search space used: 1042353423
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.0 bits)