BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] (357 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus str. psy62] Length = 357 Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/357 (100%), Positives = 357/357 (100%) Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ Sbjct: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60 Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT Sbjct: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120 Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES Sbjct: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180 Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT Sbjct: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240 Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG Sbjct: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300 Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE Sbjct: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357 >gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus str. psy62] Length = 355 Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 16/270 (5%) Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140 ++ + +E E ++ E+ LL + D + + LE+ AG GG+E+ + L RMY R+A Sbjct: 92 LQRIKLEVEYKQFES-----LLSGEADSNDA-YLEVHAGAGGTESQDWANMLLRMYTRWA 145 Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200 RK+K E L D ++ G K I G + +K E GVHR+ R+ +++ R HTS Sbjct: 146 EKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTS 205 Query: 201 AATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258 +++ V P + I+++I D RIDT RASG+GGQHVNTTDSAVRITHIPTG++V Sbjct: 206 FSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQ 265 Query: 259 EKSQHQNRLRAMKVLRARLYDVE---RKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315 E+SQH+N+ +A +LRA+LY++E R+ +AN ++ K +IG G +IR+Y + Sbjct: 266 ERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESS-KTEIGWG---RQIRSYVLQPYQ 321 Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLL 344 + D R N+ VL G +DD + L Sbjct: 322 MVKDLRTNIEKTSPSDVLDGDLDDFMKATL 351 >gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str. psy62] Length = 375 Score = 26.6 bits (57), Expect = 0.75, Method: Compositional matrix adjust. Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 11/63 (17%) Query: 13 KNRFAEIELRMS---ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69 K F I+L ++ + ++ L EEYA ++D +K + T+IG H Sbjct: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK--------KLFDGRKMDSMSRRTLIGPH 269 Query: 70 NSD 72 SD Sbjct: 270 RSD 272 >gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter asiaticus str. psy62] Length = 118 Score = 25.0 bits (53), Expect = 1.7, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%) Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216 FE+ HR+ RVP T R+H + V ++ E DVD Sbjct: 9 FEAA-HRLPRVPKTHKCHRMHGHSYRVELVMEG---DVD 43 >gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%) Query: 22 RMSESPSVDAYIKLTEEYAAISPII-------SKISIYDQKKQEEQDLHTVIGDHNSDSE 74 RM SP L ++ + ++ +KI+I+D+ K D+ + G H ++ Sbjct: 209 RMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDL 268 Query: 75 IRDLA 79 R L+ Sbjct: 269 ARGLS 273 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.316 0.132 0.362 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 213,874 Number of Sequences: 1233 Number of extensions: 8597 Number of successful extensions: 42 Number of sequences better than 100.0: 12 Number of HSP's better than 100.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 32 Number of HSP's gapped (non-prelim): 12 length of query: 357 length of database: 328,796 effective HSP length: 75 effective length of query: 282 effective length of database: 236,321 effective search space: 66642522 effective search space used: 66642522 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 39 (19.6 bits)