BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780874|ref|YP_003065287.1| peptide chain release factor 1
[Candidatus Liberibacter asiaticus str. psy62]
(357 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780874|ref|YP_003065287.1| peptide chain release factor 1 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 357
Score = 732 bits (1890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60
MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ
Sbjct: 1 MVFLSHKQICDLKNRFAEIELRMSESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQ 60
Query: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120
DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT
Sbjct: 61 DLHTVIGDHNSDSEIRDLAQIEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGT 120
Query: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180
GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES
Sbjct: 121 GGSEAALFVGDLFRMYERYAALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFES 180
Query: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240
GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT
Sbjct: 181 GVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVDIPLEDIRIDTMRASGSGGQHVNTT 240
Query: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300
DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG
Sbjct: 241 DSAVRITHIPTGIMVTSSEKSQHQNRLRAMKVLRARLYDVERKRMANERSANRKLQIGSG 300
Query: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE
Sbjct: 301 DRSERIRTYNFSQGRITDHRINLTLYKLEYVLQGYIDDIINPLLTAHQAKMIGSASE 357
>gi|254780753|ref|YP_003065166.1| peptide chain release factor 2 [Candidatus Liberibacter asiaticus
str. psy62]
Length = 355
Score = 172 bits (435), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 105/270 (38%), Positives = 160/270 (59%), Gaps = 16/270 (5%)
Query: 81 IEVLAIEKEIRELENEINYLLLPKDTDDDKSCILEIRAGTGGSEAALFVGDLFRMYERYA 140
++ + +E E ++ E+ LL + D + + LE+ AG GG+E+ + L RMY R+A
Sbjct: 92 LQRIKLEVEYKQFES-----LLSGEADSNDA-YLEVHAGAGGTESQDWANMLLRMYTRWA 145
Query: 141 ALRKWKVEVLSSSDNDDGGYKEIVATISGRGVFSRMKFESGVHRVQRVPATEASGRVHTS 200
RK+K E L D ++ G K I G + +K E GVHR+ R+ +++ R HTS
Sbjct: 146 EKRKFKTEALEIHDGEEAGIKSATLLIKGPNAYGWLKGEQGVHRLVRISPYDSNSRRHTS 205
Query: 201 AATVAVLPEAAE-IDVDIPLEDIRIDTMRASGSGGQHVNTTDSAVRITHIPTGIMV-TSS 258
+++ V P + I+++I D RIDT RASG+GGQHVNTTDSAVRITHIPTG++V
Sbjct: 206 FSSIWVYPVVDDSIEIEISESDCRIDTYRASGAGGQHVNTTDSAVRITHIPTGVVVQCQQ 265
Query: 259 EKSQHQNRLRAMKVLRARLYDVE---RKRMANERSANRKLQIGSGDRSERIRTYNFSQGR 315
E+SQH+N+ +A +LRA+LY++E R+ +AN ++ K +IG G +IR+Y +
Sbjct: 266 ERSQHKNKAQAWNMLRAKLYELELQKREEIANIGESS-KTEIGWG---RQIRSYVLQPYQ 321
Query: 316 -ITDHRINLTLYKLEYVLQGYIDDIINPLL 344
+ D R N+ VL G +DD + L
Sbjct: 322 MVKDLRTNIEKTSPSDVLDGDLDDFMKATL 351
>gi|254780766|ref|YP_003065179.1| recombination protein F [Candidatus Liberibacter asiaticus str.
psy62]
Length = 375
Score = 26.6 bits (57), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 11/63 (17%)
Query: 13 KNRFAEIELRMS---ESPSVDAYIKLTEEYAAISPIISKISIYDQKKQEEQDLHTVIGDH 69
K F I+L ++ + ++ L EEYA ++D +K + T+IG H
Sbjct: 218 KENFPHIKLSLTGFLDGKFDQSFCALKEEYAK--------KLFDGRKMDSMSRRTLIGPH 269
Query: 70 NSD 72
SD
Sbjct: 270 RSD 272
>gi|254781032|ref|YP_003065445.1| hypothetical protein CLIBASIA_04670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 118
Score = 25.0 bits (53), Expect = 1.7, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
Query: 178 FESGVHRVQRVPATEASGRVHTSAATVAVLPEAAEIDVD 216
FE+ HR+ RVP T R+H + V ++ E DVD
Sbjct: 9 FEAA-HRLPRVPKTHKCHRMHGHSYRVELVMEG---DVD 43
>gi|254781177|ref|YP_003065590.1| cell division protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 440
Score = 23.9 bits (50), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 7/65 (10%)
Query: 22 RMSESPSVDAYIKLTEEYAAISPII-------SKISIYDQKKQEEQDLHTVIGDHNSDSE 74
RM SP L ++ + ++ +KI+I+D+ K D+ + G H ++
Sbjct: 209 RMVASPYASGLATLVDDEFELGSVVIDMGGGTTKIAIFDKGKLVYMDVIAIGGSHVTNDL 268
Query: 75 IRDLA 79
R L+
Sbjct: 269 ARGLS 273
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.316 0.132 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 213,874
Number of Sequences: 1233
Number of extensions: 8597
Number of successful extensions: 42
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 12
length of query: 357
length of database: 328,796
effective HSP length: 75
effective length of query: 282
effective length of database: 236,321
effective search space: 66642522
effective search space used: 66642522
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 39 (19.6 bits)