HHsearch alignment for GI: 254780875 and conserved domain: COG0144
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis].
Probab=97.92 E-value=6.3e-06 Score=59.43 Aligned_cols=165 Identities=21% Similarity=0.196 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCCHHHHHHCCCCCCCC
Q ss_conf 620512235655531012332110124686056642142112331222233--321001333222002444201100012
Q gi|254780875|r 70 DTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESP--FFKGVGVDISCKALEIAKSNAVTNGVS 147 (264)
Q Consensus 70 ~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~--~~~v~~~Dis~~al~~A~~N~~~~~~~ 147 (264)
T Consensus 136 G~~~vQd~sS~l~a~~L-------~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~ 208 (355)
T COG0144 136 GLIYVQDEASQLPALVL-------DPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR 208 (355)
T ss_pred EEEEEECHHHHHHHHHC-------CCCCCCEEEECCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHHCCC
T ss_conf 48999677876679971-------99997968880799976999999966899876997449878999999999971998
Q ss_pred CCCCCCCCCCC--C-CC--CCHHHHHHHCCHHHHHHCCCCCCCCCCC-CCCCCCCCCCCCCC-CCHHHHHHHHHHHCCCC
Q ss_conf 22222222222--2-22--1002333201133321001221111123-57543321011232-10256899999853788
Q gi|254780875|r 148 ERFDTLQSDWF--S-SV--EGLFDVIVSNPPYIESVIVDCLGLEVRD-FDPRISLDGGIDGL-SHYRTIADGVSRHLNKD 220 (264)
Q Consensus 148 ~~i~~~~~d~~--~-~~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~-~EP~~AL~gg~dGl-~~~~~ii~~~~~~L~~~ 220 (264)
T Consensus 209 n-v~~~~~d~~~~~~~~~~~~~fD~iLlDaPCSg~G~ir-r~Pd~~~~~~~~-~----i~~l~~lQ~~iL~~a~~~lk~G 281 (355)
T COG0144 209 N-VIVVNKDARRLAELLPGGEKFDRILLDAPCSGTGVIR-RDPDVKWRRTPE-D----IAELAKLQKEILAAALKLLKPG 281 (355)
T ss_pred C-EEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCEEEC-CCCCHHCCCCHH-H----HHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3-4899513301431134557778599879998771133-581232038999-9----9999999999999999844879
Q ss_pred CEEEE---EECCCHHHH-HHHHHHHC-CCCEEE
Q ss_conf 78999---817667999-99999978-980589
Q gi|254780875|r 221 GLCSV---EIGYNQKVD-VVRIFESR-KLFLVN 248 (264)
Q Consensus 221 G~l~l---Eig~~q~~~-v~~ll~~~-gf~~v~ 248 (264)
T Consensus 282 G~LVYSTCS~~~eENE~vV~~~L~~~~~~~~~~ 314 (355)
T COG0144 282 GVLVYSTCSLTPEENEEVVERFLERHPDFELEP 314 (355)
T ss_pred CEEEEEECCCCHHCCHHHHHHHHHHCCCCEEEC
T ss_conf 889999023750028899999998589954411