HHsearch alignment for GI: 254780875 and conserved domain: COG0270
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair].
Probab=94.83 E-value=0.0083 Score=38.93 Aligned_cols=145 Identities=21% Similarity=0.202 Sum_probs=81.5
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCC-HHHHHHHC
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222----210-02333201
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEG-LFDVIVSN 171 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~-~fD~IvsN 171 (264)
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligG 74 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGG 74 (328)
T ss_pred CCCEEEEECCCCCHHHHHHHHCC-CEEEEEEECCHHHHHHHHHHCCC------CCCHHHHHHHHCHHHCCCCCCCEEEEC
T ss_conf 98549986587565889998649-84899874698899999985888------742030376605222355676379858
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC------C-CHHHHHHHHHHHCCC
Q ss_conf 133321001221111123575433210112321025689999985378878999817------6-679999999997898
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG------Y-NQKVDVVRIFESRKL 244 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig------~-~q~~~v~~ll~~~gf 244 (264)
T Consensus 75 pPCQ~FS~aG~r-~--~~~D~R~~L~---------~~~~r~I-~~~~P-~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY 140 (328)
T COG0270 75 PPCQDFSIAGKR-R--GYDDPRGSLF---------LEFIRLI-EQLRP-KFFVLENVKGLLSSKGQTFDEIKKELEELGY 140 (328)
T ss_pred CCCCCHHHHCCC-C--CCCCCHHHHH---------HHHHHHH-HHHCC-CEEEEECCHHHHHCCHHHHHHHHHHHHHCCC
T ss_conf 997213340776-6--7767334769---------9999999-96389-8799966466665441699999999987588
Q ss_pred CEE-EE--EECC---CCCCEEEEE
Q ss_conf 058-99--8056---899759999
Q gi|254780875|r 245 FLV-NA--FKDY---GGNDRVLLF 262 (264)
Q Consensus 245 ~~v-~~--~kD~---~g~~R~vi~ 262 (264)
T Consensus 141 ~~~~~ilna~dyGvPQ~ReRvfii 164 (328)
T COG0270 141 GVEFNILNAADYGVPQSRERVFIV 164 (328)
T ss_pred CCCCEEECHHHCCCCCCCCEEEEE
T ss_conf 531403039885999865379999