HHsearch alignment for GI: 254780875 and conserved domain: COG0293
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=93.88 E-value=0.18 Score=30.14 Aligned_cols=133 Identities=21% Similarity=0.167 Sum_probs=74.2
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC---------CC-CH
Q ss_conf 468605664214211233122223-33210013332220024442011000122222222222222---------21-00
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS---------VE-GL 164 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~---------~~-~~ 164 (264)
T Consensus 44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~vvavDi~p~~~---------~--~~-V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------I--PG-VIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC---------C--CC-CEEEEEECCCCCHHHHHHHHCCCCC
T ss_conf 5898799838799849999999738888489997754556---------7--89-4688413248437999998707787
Q ss_pred HHHHHHCC-HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH--H
Q ss_conf 23332011-33321001221111123575433210112321025689999985378878999817667999999999--7
Q gi|254780875|r 165 FDVIVSNP-PYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFE--S 241 (264)
Q Consensus 165 fD~IvsNP-PYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~--~ 241 (264)
T Consensus 112 ~DvV~sD~ap--~~~g~~~~-----Dh-~r~--------~~L~~~a~~~a~~vL~~~G~fv~K~--fqg~~~~~~l~~~~ 173 (205)
T COG0293 112 VDVVLSDMAP--NTSGNRSV-----DH-ARS--------MYLCELALEFALEVLKPGGSFVAKV--FQGEDFEDLLKALR 173 (205)
T ss_pred CCEEEECCCC--CCCCCCCC-----CH-HHH--------HHHHHHHHHHHHHEECCCCEEEEEE--EECCCHHHHHHHHH
T ss_conf 6668725887--76787220-----08-899--------9999999999987257898399999--75798799999999
Q ss_pred CCCCEEEEEECCCCCCE
Q ss_conf 89805899805689975
Q gi|254780875|r 242 RKLFLVNAFKDYGGNDR 258 (264)
Q Consensus 242 ~gf~~v~~~kD~~g~~R 258 (264)
T Consensus 174 ~~F~~v~~~KP~aSR~~ 190 (205)
T COG0293 174 RLFRKVKIFKPKASRKR 190 (205)
T ss_pred HHHCEEEEECCCCCCCC
T ss_conf 86320677358554677