HHsearch alignment for GI: 254780875 and conserved domain: COG0421
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism].
Probab=97.63 E-value=5.4e-05 Score=53.30 Aligned_cols=152 Identities=23% Similarity=0.296 Sum_probs=98.0
Q ss_pred CCHHHHCCC-EEEEEEEEEEECCCC----CHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 837685363-144237677504620----512235655531012332110124686056642142112331222233321
Q gi|254780875|r 49 ESIHRILGW-RDFYNVRLTLSSDTF----EPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFK 123 (264)
Q Consensus 49 ~Pl~YIlg~-~~F~~~~f~v~~~vL----IPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~ 123 (264)
T Consensus 29 s~~q~i~i~~~~~~g~~l~ldg~~q~~e~de~~yhEml~h~~~~------ah~~pk~VLiiGgGdG~tlRevlkh~~ve~ 102 (282)
T COG0421 29 SEYQDIEIFESEDFGKVLVLDGVVQLTERDEFIYHEMLAHVPLL------AHPNPKRVLIIGGGDGGTLREVLKHLPVER 102 (282)
T ss_pred CCCEEEEEEECCCCCEEEEECCHHHHCCCHHHHHHHHHHHCHHH------HCCCCCEEEEECCCCCHHHHHHHHCCCCCE
T ss_conf 78517999964651127884475550210268899998703064------379977699988976699999983688433
Q ss_pred CCCCCCCCCCHHHHHHCCCCCC--C-CCCCCCCCCCCCCCC---CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 0013332220024442011000--1-222222222222222---100233320113332100122111112357543321
Q gi|254780875|r 124 GVGVDISCKALEIAKSNAVTNG--V-SERFDTLQSDWFSSV---EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLD 197 (264)
Q Consensus 124 v~~~Dis~~al~~A~~N~~~~~--~-~~~i~~~~~d~~~~~---~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~ 197 (264)
T Consensus 103 i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D-----~-----tdp-~---gp~~~Lf 168 (282)
T COG0421 103 ITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD-----S-----TDP-V---GPAEALF 168 (282)
T ss_pred EEEEECCHHHHHHHHHHCCCCCCCCCCCCEEEEECCHHHHHHHCCCCCCEEEEC-----C-----CCC-C---CCCCCCC
T ss_conf 799970889999999866675433579736899610799987488767789985-----8-----899-8---8430237
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 0112321025689999985378878999817
Q gi|254780875|r 198 GGIDGLSHYRTIADGVSRHLNKDGLCSVEIG 228 (264)
Q Consensus 198 gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig 228 (264)
T Consensus 169 t--------~eFy~~~~~~L~~~Gi~v~q~~ 191 (282)
T COG0421 169 T--------EEFYEGCRRALKEDGIFVAQAG 191 (282)
T ss_pred C--------HHHHHHHHHHCCCCCEEEEECC
T ss_conf 7--------9999999986288968999447