HHsearch alignment for GI: 254780875 and conserved domain: COG1041
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair].
Probab=99.09 E-value=2e-10 Score=89.08 Aligned_cols=143 Identities=22% Similarity=0.229 Sum_probs=100.8
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCC-CCCC-HHHHHHHC
Q ss_conf 2468605664214211233122223332100133322200244420110001222222222-2222-2210-02333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS-DWFS-SVEG-LFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~-d~~~-~~~~-~fD~IvsN 171 (264)
T Consensus 195 v~~G~~vlDPFcGTGgiLiEag--l~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~lpl~~~~vdaIatD 271 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAG--LMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATNLPLRDNSVDAIATD 271 (347)
T ss_pred CCCCCEEECCCCCCCHHHHHHH--HCCCEEEECCHHHHHHHHHHHHHHHHCCCC-EEEEEECCCCCCCCCCCCCCEEEEC
T ss_conf 6469876457678348888366--427567603237999855664156627676-1688730221277887742358846
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEEE
Q ss_conf 13332100122111112357543321011232102568999998537887899981766799999999978980589980
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAFK 251 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~k 251 (264)
T Consensus 272 PPYGrst~~~~~~l-----------------~~Ly~~~le~~~evLk~gG~~vf~~p~----~~~~~~~~~~f~v~~~~~ 330 (347)
T COG1041 272 PPYGRSTKIKGEGL-----------------DELYEEALESASEVLKPGGRIVFAAPR----DPRHELEELGFKVLGRFT 330 (347)
T ss_pred CCCCCCCCCCCCCH-----------------HHHHHHHHHHHHHHHHCCCEEEEECCC----CCHHHHHHCCCEEEEEEE
T ss_conf 99871002455528-----------------999999999999873048489996178----605567643965999997
Q ss_pred CCCCC--CEEEE
Q ss_conf 56899--75999
Q gi|254780875|r 252 DYGGN--DRVLL 261 (264)
Q Consensus 252 D~~g~--~R~vi 261 (264)
T Consensus 331 ~~~H~sLtR~i~ 342 (347)
T COG1041 331 MRVHGSLTRVIY 342 (347)
T ss_pred EEECCCEEEEEE
T ss_conf 764174689999