HHsearch alignment for GI: 254780875 and conserved domain: COG1189
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].
Probab=94.90 E-value=0.062 Score=33.15 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=67.9
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCC-CCCC----CCCCHHHHHH
Q ss_conf 2468605664214211233122223332100133322200244420110001222222222-2222----2210023332
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS-DWFS----SVEGLFDVIV 169 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~-d~~~----~~~~~fD~Iv 169 (264)
T Consensus 77 ~~k~kv~LDiGsSTGGFTd~-lLq~gAk~VyavDVG~~Ql~~kLR~------d~rV~~~E~tN~r~l~~~~~~~~~d~~v 149 (245)
T COG1189 77 DVKGKVVLDIGSSTGGFTDV-LLQRGAKHVYAVDVGYGQLHWKLRN------DPRVIVLERTNVRYLTPEDFTEKPDLIV 149 (245)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHCCCCEEEEEECCCCCCCHHHHC------CCCEEEEECCCHHHCCHHHCCCCCCEEE
T ss_conf 88997899826787629999-9875874799997037743786735------9847998527831189878176778479
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEE------EECCC-------------
Q ss_conf 01133321001221111123575433210112321025689999985378878999------81766-------------
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSV------EIGYN------------- 230 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~l------Eig~~------------- 230 (264)
T Consensus 150 ~DvSFISL-----------------------------~~iLp~l~~l~~~~~~~v~LvKPQFEagr~~v~kkGvv~d~~~ 200 (245)
T COG1189 150 IDVSFISL-----------------------------KLILPALLLLLKDGGDLVLLVKPQFEAGREQVGKKGVVRDPKL 200 (245)
T ss_pred EEEEHHHH-----------------------------HHHHHHHHHHCCCCCEEEEEECCHHHHHHHHCCCCCEECCCCH
T ss_conf 96423319-----------------------------9888999974278863899736555540432276863448015
Q ss_pred H---HHHHHHHHHHCCCCEEEEE
Q ss_conf 7---9999999997898058998
Q gi|254780875|r 231 Q---KVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 231 q---~~~v~~ll~~~gf~~v~~~ 250 (264)
T Consensus 201 ~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 201 HAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 89999999988864595786557