HHsearch alignment for GI: 254780875 and conserved domain: COG1352
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=98.49 E-value=6.5e-08 Score=72.50 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=80.7
Q ss_pred HHHHHHCCCCCCCCCCCCCCCEEEEECCCC----CCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHCCCC-----C-
Q ss_conf 555310123321101246860566421421----12331222233-----32100133322200244420110-----0-
Q gi|254780875|r 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTG----AVCLALLKESP-----FFKGVGVDISCKALEIAKSNAVT-----N- 144 (264)
Q Consensus 80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG----~i~i~la~~~~-----~~~v~~~Dis~~al~~A~~N~~~-----~- 144 (264)
T Consensus 80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~ 158 (268)
T COG1352 80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG 158 (268)
T ss_pred HHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCC
T ss_conf 9999987998730469-853999667689955899999999873322587438999979999999986288876676544
Q ss_pred ----------------------CCCCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----------------------0122222222222222--2100233320113332100122111112357543321011
Q gi|254780875|r 145 ----------------------GVSERFDTLQSDWFSS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI 200 (264)
Q Consensus 145 ----------------------~~~~~i~~~~~d~~~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~ 200 (264)
T Consensus 159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC------RNVLIYFd~~~q------------ 220 (268)
T COG1352 159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC------RNVLIYFDEETQ------------ 220 (268)
T ss_pred CCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEE------CCEEEEECHHHH------------
T ss_conf 99899963376469984798768762437753578887543589888998------414886378999------------
Q ss_pred CCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 232102568999998537887899981
Q gi|254780875|r 201 DGLSHYRTIADGVSRHLNKDGLCSVEI 227 (264)
Q Consensus 201 dGl~~~~~ii~~~~~~L~~~G~l~lEi 227 (264)
T Consensus 221 ------~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 221 ------ERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred ------HHHHHHHHHHHCCCCEEEECC
T ss_conf ------999999999748997899826