HHsearch alignment for GI: 254780875 and conserved domain: COG1352

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].
Probab=98.49  E-value=6.5e-08  Score=72.50  Aligned_cols=123  Identities=20%  Similarity=0.236  Sum_probs=80.7

Q ss_pred             HHHHHHCCCCCCCCCCCCCCCEEEEECCCC----CCCCCCCCCCC-----CCCCCCCCCCCCCHHHHHHCCCC-----C-
Q ss_conf             555310123321101246860566421421----12331222233-----32100133322200244420110-----0-
Q gi|254780875|r   80 LLVDSALAFSLPRIEKRDVVRILDLGTGTG----AVCLALLKESP-----FFKGVGVDISCKALEIAKSNAVT-----N-  144 (264)
Q Consensus        80 ~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG----~i~i~la~~~~-----~~~v~~~Dis~~al~~A~~N~~~-----~-  144 (264)
T Consensus        80 ~l~~~v~p~l~~~~~~-~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~  158 (268)
T COG1352          80 ELRDEVLPELVKRKKG-RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRG  158 (268)
T ss_pred             HHHHHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHHCCCCCHHHHHCC
T ss_conf             9999987998730469-853999667689955899999999873322587438999979999999986288876676544


Q ss_pred             ----------------------CCCCCCCCCCCCCCCC--CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             ----------------------0122222222222222--2100233320113332100122111112357543321011
Q gi|254780875|r  145 ----------------------GVSERFDTLQSDWFSS--VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGI  200 (264)
Q Consensus       145 ----------------------~~~~~i~~~~~d~~~~--~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~  200 (264)
T Consensus       159 ~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC------RNVLIYFd~~~q------------  220 (268)
T COG1352         159 LPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC------RNVLIYFDEETQ------------  220 (268)
T ss_pred             CCHHHHHHHEEECCCCCEEECHHHHCCCEEEECCCCCCCCCCCCCCEEEE------CCEEEEECHHHH------------
T ss_conf             99899963376469984798768762437753578887543589888998------414886378999------------


Q ss_pred             CCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf             232102568999998537887899981
Q gi|254780875|r  201 DGLSHYRTIADGVSRHLNKDGLCSVEI  227 (264)
Q Consensus       201 dGl~~~~~ii~~~~~~L~~~G~l~lEi  227 (264)
T Consensus       221 ------~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         221 ------ERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             ------HHHHHHHHHHHCCCCEEEECC
T ss_conf             ------999999999748997899826