HHsearch alignment for GI: 254780875 and conserved domain: COG2263
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis].
Probab=99.22 E-value=2e-11 Score=95.60 Aligned_cols=125 Identities=23% Similarity=0.248 Sum_probs=87.6
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
Q ss_conf 24686056642142112331222233321001333222002444201100012222222222222221002333201133
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPY 174 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~~~fD~IvsNPPY 174 (264)
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lG-a~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv-~~~~~~~dtvimNPPF 118 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLG-ASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADV-SDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCCCEEEECCCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHH--HCCCEEEEECCH-HHCCCCCCEEEECCCC
T ss_conf 8478888882788478899998629-71799993698999999988886--088469998210-1147766669978997
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3210012211111235754332101123210256899999853788789998176679999999997898058998
Q gi|254780875|r 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFLVNAF 250 (264)
Q Consensus 175 I~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v~~ll~~~gf~~v~~~ 250 (264)
T Consensus 119 G~~----------~rh-a--------D-----r~Fl~~Ale~s---~vVYsiH~a~~~~f~~~~~~~~G~~v~~~~ 167 (198)
T COG2263 119 GSQ----------RRH-A--------D-----RPFLLKALEIS---DVVYSIHKAGSRDFVEKFAADLGGTVTHIE 167 (198)
T ss_pred CCC----------CCC-C--------C-----HHHHHHHHHHH---HEEEEEECCCCHHHHHHHHHHCCCEEEEEE
T ss_conf 322----------136-8--------8-----89999999740---147874016607999999885497089999