HHsearch alignment for GI: 254780875 and conserved domain: COG2519
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis].
Probab=99.24 E-value=7.9e-12 Score=98.29 Aligned_cols=128 Identities=23% Similarity=0.280 Sum_probs=103.9
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCC-CCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHH
Q ss_conf 10124686056642142112331222-23332100133322200244420110001222222222222222-10023332
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLK-ESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIV 169 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~-~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~Iv 169 (264)
T Consensus 89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~ 168 (256)
T COG2519 89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF 168 (256)
T ss_pred HCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 70999887899815680599999999648884599999527899999999998424561378705400024655467799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-CCHHHHHHHHHHHCCCCEEE
Q ss_conf 01133321001221111123575433210112321025689999985378878999817-66799999999978980589
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-YNQKVDVVRIFESRKLFLVN 248 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-~~q~~~v~~ll~~~gf~~v~ 248 (264)
T Consensus 169 LDmp-----------------~PW--------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g~~~ie 217 (256)
T COG2519 169 LDLP-----------------DPW--------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERGFVDIE 217 (256)
T ss_pred ECCC-----------------CHH--------------HHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCHH
T ss_conf 7589-----------------848--------------999999987179967999839789999999999866951502
Q ss_pred EE
Q ss_conf 98
Q gi|254780875|r 249 AF 250 (264)
Q Consensus 249 ~~ 250 (264)
T Consensus 218 ~~ 219 (256)
T COG2519 218 AV 219 (256)
T ss_pred HH
T ss_conf 32