HHsearch alignment for GI: 254780875 and conserved domain: PRK00216
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed.
Probab=99.64 E-value=9.2e-16 Score=124.17 Aligned_cols=144 Identities=21% Similarity=0.269 Sum_probs=113.0
Q ss_pred CCCCCCEEEEECCCCCCCCCCCCCC-CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC--CCCHHHHHHHC
Q ss_conf 2468605664214211233122223-33210013332220024442011000122222222222222--21002333201
Q gi|254780875|r 95 KRDVVRILDLGTGTGAVCLALLKES-PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS--VEGLFDVIVSN 171 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~i~i~la~~~-~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~--~~~~fD~IvsN 171 (264)
T Consensus 49 ~~~g~~vLDvgcGTG~~~~~l~~~~~~~~~v~g~D~S~~ML~~A~~k~~~~~~~~~i~~~~~da~~lpf~d~sfD~v~~~ 128 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGETGEVVGLDFSEGMLAVGREKLLDKGLSGNVEFVQGDAEALPFPDNSFDAVTIA 128 (239)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 89999898845776387999999729976799991988999999999997389888507982355688876667650026
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEE-EEEC----------------------
Q ss_conf 13332100122111112357543321011232102568999998537887899-9817----------------------
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCS-VEIG---------------------- 228 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~-lEig---------------------- 228 (264)
T Consensus 129 --f----~l-------~~~-------------~d~~~~l~E~~RVLkPGG~l~ilefs~p~~~~~~~~y~~Y~~~ilP~i 182 (239)
T PRK00216 129 --F----GL-------RNV-------------PDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLI 182 (239)
T ss_pred --C----EE-------EEC-------------CCHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf --1----56-------714-------------867999999998766480899997589997688999999999999999
Q ss_pred --------------------CCHHHHHHHHHHHCCCCEEEEEECCCCCCEEEEEEC
Q ss_conf --------------------667999999999789805899805689975999979
Q gi|254780875|r 229 --------------------YNQKVDVVRIFESRKLFLVNAFKDYGGNDRVLLFCR 264 (264)
Q Consensus 229 --------------------~~q~~~v~~ll~~~gf~~v~~~kD~~g~~R~vi~~r 264 (264)
T Consensus 183 g~~~~~~~~aY~YL~~Si~~fp~~~~~~~~l~~aGF~~v~~~~l~~Gi~~i~~~~K 238 (239)
T PRK00216 183 GKLVSKNAEAYRYLAESIRAFPDQEELAAMMEEAGFERVKYRNLTGGIVALHVGYK 238 (239)
T ss_pred HHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCEEEEEECCCCEEEEEEEEC
T ss_conf 99971987888769999998889999999999879967889987887699999989