HHsearch alignment for GI: 254780875 and conserved domain: PRK00274

>PRK00274 ksgA dimethyladenosine transferase; Reviewed.
Probab=98.17  E-value=2.7e-07  Score=68.43  Aligned_cols=93  Identities=19%  Similarity=0.307  Sum_probs=67.3

Q ss_pred             EEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf             42376775046205122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r   60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS  139 (264)
Q Consensus        60 F~~~~f~v~~~vLIPRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~  139 (264)
T Consensus        16 ~lGQnFL~d~~i----------i~kIv~~~----~~~~~d~VlEIGpG~G~LT~~Ll~~~--~~v~aiEiD~~l~~~L~~   79 (267)
T PRK00274         16 SLGQNFLIDENI----------IDKIVRAA----DLQPGDRVLEIGPGLGALTEPLLERA--AKVTAIEIDRDLAPILRE   79 (267)
T ss_pred             CCCCCCCCCHHH----------HHHHHHHC----CCCCCCEEEEECCCCCHHHHHHHHHC--CCEEEEECCHHHHHHHHH
T ss_conf             778221489899----------99999960----89999907996388888999999626--805886368899999850


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCC-----CHHHHHHHCCHHH
Q ss_conf             01100012222222222222221-----0023332011333
Q gi|254780875|r  140 NAVTNGVSERFDTLQSDWFSSVE-----GLFDVIVSNPPYI  175 (264)
Q Consensus       140 N~~~~~~~~~i~~~~~d~~~~~~-----~~fD~IvsNPPYI  175 (264)
T Consensus        80 ~-------~~~~ii~~D~L~~~~~~~~~~~~~~vvgNLPY~  113 (267)
T PRK00274         80 T-------DNLTIIEGDALKVDLEELAEGQPLKVVANLPYN  113 (267)
T ss_pred             C-------CCEEEEECHHHHCCHHHHCCCCCEEEEECCCCH
T ss_conf             4-------786999650664786774567872799558830