HHsearch alignment for GI: 254780875 and conserved domain: PRK04266

>PRK04266 fibrillarin; Provisional.
Probab=96.87  E-value=0.0077  Score=39.12  Aligned_cols=137  Identities=14%  Similarity=0.182  Sum_probs=80.1

Q ss_pred             CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_conf             10124686056642142112331222233321001333222002----4442011000122222222222222-----21
Q gi|254780875|r   92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE----IAKSNAVTNGVSERFDTLQSDWFSS-----VE  162 (264)
Q Consensus        92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~----~A~~N~~~~~~~~~i~~~~~d~~~~-----~~  162 (264)
T Consensus        67 ~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R-------~NivPIl~DAr~P~~Y~~~v  139 (226)
T PRK04266         67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER-------KNIIPILGDARKPEEYAHLV  139 (226)
T ss_pred             CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHC
T ss_conf             56758998799954777984888987517964999982707789999998508-------99625754678845644205


Q ss_pred             CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-----CC-----HH
Q ss_conf             002333201133321001221111123575433210112321025689999985378878999817-----66-----79
Q gi|254780875|r  163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-----YN-----QK  232 (264)
Q Consensus       163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-----~~-----q~  232 (264)
T Consensus       140 ~~VD~i~qD---------------vAQ--~dQa-----------~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf  191 (226)
T PRK04266        140 EKVDVIYQD---------------VAQ--PNQA-----------EIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIF  191 (226)
T ss_pred             CCCCEEEEE---------------CCC--HHHH-----------HHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHH
T ss_conf             656589960---------------677--4289-----------999999998601598899999742356468989999


Q ss_pred             HHHHHHHHHCCCCEEEEEECCCCCCE---EEEEEC
Q ss_conf             99999999789805899805689975---999979
Q gi|254780875|r  233 VDVVRIFESRKLFLVNAFKDYGGNDR---VLLFCR  264 (264)
Q Consensus       233 ~~v~~ll~~~gf~~v~~~kD~~g~~R---~vi~~r  264 (264)
T Consensus       192 ~~~~~~L~~~~~~~~e~i-~L~py~~dH~~vv~r~  225 (226)
T PRK04266        192 KEEIKKLEEGGFEILEVV-DLEPYHKDHAAVVARK  225 (226)
T ss_pred             HHHHHHHHHCCCCEEEEE-ECCCCCCCCEEEEEEC
T ss_conf             999999987699668998-1577678828999966