HHsearch alignment for GI: 254780875 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=96.87 E-value=0.0077 Score=39.12 Aligned_cols=137 Identities=14% Similarity=0.182 Sum_probs=80.1
Q ss_pred CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCCCCCCCCCCCCCCCCC-----CC
Q ss_conf 10124686056642142112331222233321001333222002----4442011000122222222222222-----21
Q gi|254780875|r 92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALE----IAKSNAVTNGVSERFDTLQSDWFSS-----VE 162 (264)
Q Consensus 92 ~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~----~A~~N~~~~~~~~~i~~~~~d~~~~-----~~ 162 (264)
T Consensus 67 ~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R-------~NivPIl~DAr~P~~Y~~~v 139 (226)
T PRK04266 67 NFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEER-------KNIIPILGDARKPEEYAHLV 139 (226)
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHC
T ss_conf 56758998799954777984888987517964999982707789999998508-------99625754678845644205
Q ss_pred CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEEC-----CC-----HH
Q ss_conf 002333201133321001221111123575433210112321025689999985378878999817-----66-----79
Q gi|254780875|r 163 GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG-----YN-----QK 232 (264)
Q Consensus 163 ~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig-----~~-----q~ 232 (264)
T Consensus 140 ~~VD~i~qD---------------vAQ--~dQa-----------~I~~~Na~~FLk~gG~~~l~iKA~Sid~t~~p~~vf 191 (226)
T PRK04266 140 EKVDVIYQD---------------VAQ--PNQA-----------EIAADNADIFLKPGGYLMLAIKARSIDVTKDPKEIF 191 (226)
T ss_pred CCCCEEEEE---------------CCC--HHHH-----------HHHHHHHHHHHHCCCEEEEEEEEEEEECCCCHHHHH
T ss_conf 656589960---------------677--4289-----------999999998601598899999742356468989999
Q ss_pred HHHHHHHHHCCCCEEEEEECCCCCCE---EEEEEC
Q ss_conf 99999999789805899805689975---999979
Q gi|254780875|r 233 VDVVRIFESRKLFLVNAFKDYGGNDR---VLLFCR 264 (264)
Q Consensus 233 ~~v~~ll~~~gf~~v~~~kD~~g~~R---~vi~~r 264 (264)
T Consensus 192 ~~~~~~L~~~~~~~~e~i-~L~py~~dH~~vv~r~ 225 (226)
T PRK04266 192 KEEIKKLEEGGFEILEVV-DLEPYHKDHAAVVARK 225 (226)
T ss_pred HHHHHHHHHCCCCEEEEE-ECCCCCCCCEEEEEEC
T ss_conf 999999987699668998-1577678828999966