HHsearch alignment for GI: 254780875 and conserved domain: PRK10611

>PRK10611 chemotaxis methyltransferase CheR; Provisional.
Probab=98.45  E-value=5.7e-07  Score=66.32  Aligned_cols=111  Identities=20%  Similarity=0.244  Sum_probs=72.4

Q ss_pred             CCCCCCEEEEECCCCC----CCCCCCCC----CCCCCCCCCCCCCCCHHHHHHCCCC-----------------------
Q ss_conf             2468605664214211----23312222----3332100133322200244420110-----------------------
Q gi|254780875|r   95 KRDVVRILDLGTGTGA----VCLALLKE----SPFFKGVGVDISCKALEIAKSNAVT-----------------------  143 (264)
Q Consensus        95 ~~~~~~vLDlG~GsG~----i~i~la~~----~~~~~v~~~Dis~~al~~A~~N~~~-----------------------  143 (264)
T Consensus       113 ~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~  192 (287)
T PRK10611        113 RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPH  192 (287)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCC
T ss_conf             58975899767788723999999999973237777079999798889999980898889984599999951164157876


Q ss_pred             -------CCCCCCCCCCCCCCCCC---CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             -------00122222222222222---21002333201133321001221111123575433210112321025689999
Q gi|254780875|r  144 -------NGVSERFDTLQSDWFSS---VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV  213 (264)
Q Consensus       144 -------~~~~~~i~~~~~d~~~~---~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~  213 (264)
T Consensus       193 ~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfC------RNVlIYFd~~------------------~q~~vl~~~  248 (287)
T PRK10611        193 EGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFC------RNVMIYFDKT------------------TQQEILRRF  248 (287)
T ss_pred             CCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEE------CCCCCCCCHH------------------HHHHHHHHH
T ss_conf             6618745787630777140067998888899519997------8405367899------------------999999999


Q ss_pred             HHHCCCCCEEEEEECC
Q ss_conf             9853788789998176
Q gi|254780875|r  214 SRHLNKDGLCSVEIGY  229 (264)
Q Consensus       214 ~~~L~~~G~l~lEig~  229 (264)
T Consensus       249 ~~~L~pgG~L~lG~sE  264 (287)
T PRK10611        249 VPLLKPDGLLFAGHSE  264 (287)
T ss_pred             HHHHCCCCEEEEECCC
T ss_conf             9986899289983887