HHsearch alignment for GI: 254780875 and conserved domain: PRK10611
>PRK10611 chemotaxis methyltransferase CheR; Provisional.
Probab=98.45 E-value=5.7e-07 Score=66.32 Aligned_cols=111 Identities=20% Similarity=0.244 Sum_probs=72.4
Q ss_pred CCCCCCEEEEECCCCC----CCCCCCCC----CCCCCCCCCCCCCCCHHHHHHCCCC-----------------------
Q ss_conf 2468605664214211----23312222----3332100133322200244420110-----------------------
Q gi|254780875|r 95 KRDVVRILDLGTGTGA----VCLALLKE----SPFFKGVGVDISCKALEIAKSNAVT----------------------- 143 (264)
Q Consensus 95 ~~~~~~vLDlG~GsG~----i~i~la~~----~~~~~v~~~Dis~~al~~A~~N~~~----------------------- 143 (264)
T Consensus 113 ~~~~lRIWSAgCSTGEEpYSiAm~l~E~~~~~~~~~~I~aTDIs~~~L~~Ar~GiY~~~~~~~~p~~~~~ryF~~~~~~~ 192 (287)
T PRK10611 113 RSGEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRLEELKTLSPQQLQRYFMRGTGPH 192 (287)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCHHHHHCCCHHHHHHHEECCCCCC
T ss_conf 58975899767788723999999999973237777079999798889999980898889984599999951164157876
Q ss_pred -------CCCCCCCCCCCCCCCCC---CCCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf -------00122222222222222---21002333201133321001221111123575433210112321025689999
Q gi|254780875|r 144 -------NGVSERFDTLQSDWFSS---VEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGV 213 (264)
Q Consensus 144 -------~~~~~~i~~~~~d~~~~---~~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~ 213 (264)
T Consensus 193 ~g~~~v~~~lr~~V~F~~~NL~~~~~~~~~~fDlIfC------RNVlIYFd~~------------------~q~~vl~~~ 248 (287)
T PRK10611 193 EGLVRVRQELANYVDFQSLNLLAKQYTVPGPFDAIFC------RNVMIYFDKT------------------TQQEILRRF 248 (287)
T ss_pred CCEEEECHHHHCCCEEEHHHCCCCCCCCCCCCEEEEE------CCCCCCCCHH------------------HHHHHHHHH
T ss_conf 6618745787630777140067998888899519997------8405367899------------------999999999
Q ss_pred HHHCCCCCEEEEEECC
Q ss_conf 9853788789998176
Q gi|254780875|r 214 SRHLNKDGLCSVEIGY 229 (264)
Q Consensus 214 ~~~L~~~G~l~lEig~ 229 (264)
T Consensus 249 ~~~L~pgG~L~lG~sE 264 (287)
T PRK10611 249 VPLLKPDGLLFAGHSE 264 (287)
T ss_pred HHHHCCCCEEEEECCC
T ss_conf 9986899289983887