HHsearch alignment for GI: 254780875 and conserved domain: PRK10901
>PRK10901 16S rRNA methyltransferase B; Provisional.
Probab=98.69 E-value=4e-08 Score=73.92 Aligned_cols=145 Identities=19% Similarity=0.182 Sum_probs=95.2
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC----CCCHHHHHH
Q ss_conf 1246860566421421123312222333210013332220024442011000122222222222222----210023332
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIV 169 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~----~~~~fD~Iv 169 (264)
T Consensus 242 ~p~~g~~VLD~CAaPGGKt~~la~~~~~~~v~A~D~~~~Rl~~l~~n~~Rlg~~~--~v~~~d~~~~~~~~~~~~fD~IL 319 (428)
T PRK10901 242 APQNGEHILDLCAAPGGKTTHILEVAPEAQVLAVDIDEQRLSRVYDNLKRLGMKA--TVKQGDGRYPSQWCGEQQFDRIL 319 (428)
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCE--EEEECCCCCHHHHCCCCCCCEEE
T ss_conf 9888987987168876689999996458928999698889999999999759973--99977655723313445678799
Q ss_pred HCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC----CCHHHHHHHHHHHCCCCCEEEE---EECCCHH-HHHHHHHHH
Q ss_conf 0113332100122111112357543321011232----1025689999985378878999---8176679-999999997
Q gi|254780875|r 170 SNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGL----SHYRTIADGVSRHLNKDGLCSV---EIGYNQK-VDVVRIFES 241 (264)
Q Consensus 170 sNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl----~~~~~ii~~~~~~L~~~G~l~l---Eig~~q~-~~v~~ll~~ 241 (264)
T Consensus 320 lDaPCSg~G~--------lrR~Pdikw~~~~~di~~l~~lQ~~iL~~a~~~lk~gG~LvYsTCSi~~eENe~~I~~FL~~ 391 (428)
T PRK10901 320 LDAPCSATGV--------IRRHPDIKWLRRDRDIAELAQLQSEILDAIWPHLKSGGTLVYATCSVLPEENSQQIKAFLQR 391 (428)
T ss_pred ECCCCCCCEE--------ECCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 7589888724--------44685421128999999999999999999998668898899998999957789999999985
Q ss_pred C-CCCEEE
Q ss_conf 8-980589
Q gi|254780875|r 242 R-KLFLVN 248 (264)
Q Consensus 242 ~-gf~~v~ 248 (264)
T Consensus 392 ~~d~~l~~ 399 (428)
T PRK10901 392 TPDAELCE 399 (428)
T ss_pred CCCCEECC
T ss_conf 99978606