HHsearch alignment for GI: 254780875 and conserved domain: TIGR02143

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase; InterPro: IPR011869 This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of this entry belong to the Proteobacteria. ; GO: 0009021 tRNA (uracil-5-)-methyltransferase activity, 0008033 tRNA processing.
Probab=97.93  E-value=2e-06  Score=62.77  Aligned_cols=127  Identities=19%  Similarity=0.238  Sum_probs=89.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHCCCCHHHHCCC---------EEEEEEEEEEECCCCCHH-HH-------H---HHHHHHH
Q ss_conf             48858989999999999989749837685363---------144237677504620512-23-------5---6555310
Q gi|254780875|r   26 PDSVLDDRQRFFLTNAIVRSLKHESIHRILGW---------RDFYNVRLTLSSDTFEPR-PE-------T---ELLVDSA   85 (264)
Q Consensus        26 ~~~~l~~~~~~~l~~~i~rr~~g~Pl~YIlg~---------~~F~~~~f~v~~~vLIPR-pe-------T---E~lv~~~   85 (264)
T Consensus       116 YHk~Ldd~W~~~A~~L~~~L~~~~l~v~lIGRa~k~Ki~l~~DYv~E~L~V~gr~~~YrQ~E~sFtQPNa~vn~kMLeWA  195 (361)
T TIGR02143       116 YHKQLDDEWRQAAEALKDKLRAQGLDVNLIGRARKKKIVLDRDYVDETLPVNGREFIYRQVENSFTQPNAAVNQKMLEWA  195 (361)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCEEEEECCCCEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf             06772178999999999998634785689973368655510353036620388078998637872475189999999999


Q ss_pred             CCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             12332110124686056642142112331222233321001333222002444201100012222222222222
Q gi|254780875|r   86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS  159 (264)
Q Consensus        86 l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~  159 (264)
T Consensus       196 ~~~~----~~~~g~DLLELYCGNGNFsLaLA~~f~--rVLATEiaK~SV~aAq~Ni~~N~idN-v~i~RlSAEE  262 (361)
T TIGR02143       196 LEVT----QNSKGMDLLELYCGNGNFSLALAQNFE--RVLATEIAKPSVNAAQYNIAANKIDN-VQIIRLSAEE  262 (361)
T ss_pred             HHHH----CCCCCCCCCEEECCCCCCHHHHHHHHH--HHHHHHCCCCCHHHHHHHHHCCCCCC-EEHHHHHHHH
T ss_conf             9983----588887201000267531044565333--45543024024799999987179883-1010232799