HHsearch alignment for GI: 254780875 and conserved domain: pfam01739
>pfam01739 CheR CheR methyltransferase, SAM binding domain. CheR proteins are part of the chemotaxis signaling mechanism in bacteria. CheR methylates the chemotaxis receptor at specific glutamate residues. CheR is an S-adenosylmethionine- dependent methyltransferase - the C-terminal domain (this one) binds SAM.
Probab=98.35 E-value=2.1e-07 Score=69.21 Aligned_cols=111 Identities=23% Similarity=0.234 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEECCCCC----CCCCCCCCC-----CCCCCCCCCCCCCCHHHHHHCCCCC--------------------
Q ss_conf 12468605664214211----233122223-----3321001333222002444201100--------------------
Q gi|254780875|r 94 EKRDVVRILDLGTGTGA----VCLALLKES-----PFFKGVGVDISCKALEIAKSNAVTN-------------------- 144 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~----i~i~la~~~-----~~~~v~~~Dis~~al~~A~~N~~~~-------------------- 144 (264)
T Consensus 27 ~~~~~lrIWsagCStGEE~YSlAi~l~e~~~~~~~~~~~I~atDI~~~~l~~Ar~G~Y~~~~~~~~p~~~~~ryF~~~~~ 106 (194)
T pfam01739 27 RNSRRVRIWSAGCSSGEEPYSLAMLLAETLPNALPWDFKILATDIDLSALEKARAGVYPERELEGLPPELLRRYFTKGAG 106 (194)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCCCC
T ss_conf 88995599973688995189999999997432578744999973988999999878988999845999999962860789
Q ss_pred -------CCCCCCCCCCCCCCCCC-CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf -------01222222222222222-1002333201133321001221111123575433210112321025689999985
Q gi|254780875|r 145 -------GVSERFDTLQSDWFSSV-EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRH 216 (264)
Q Consensus 145 -------~~~~~i~~~~~d~~~~~-~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~ 216 (264)
T Consensus 107 ~~~~i~~~lr~~V~F~~~NL~~~~~~~~~DlIfC------RNVlIYF~~~------------------~~~~vl~~l~~~ 162 (194)
T pfam01739 107 GGYRVKPEIKEMVLFEYHNLLDYPPLGDFDVIFC------RNVLIYFDEE------------------TQRKILNRFASA 162 (194)
T ss_pred CCEEECHHHHCCCEEEECCCCCCCCCCCEEEEEE------CCEEEECCHH------------------HHHHHHHHHHHH
T ss_conf 9487688997116685466556887675039998------0210137999------------------999999999998
Q ss_pred CCCCCEEEEEEC
Q ss_conf 378878999817
Q gi|254780875|r 217 LNKDGLCSVEIG 228 (264)
Q Consensus 217 L~~~G~l~lEig 228 (264)
T Consensus 163 L~~gG~L~lG~~ 174 (194)
T pfam01739 163 LKPGGYLFLGHS 174 (194)
T ss_pred HCCCCEEEEECC
T ss_conf 489949998075