HHsearch alignment for GI: 254780875 and conserved domain: pfam01861
>pfam01861 DUF43 Protein of unknown function DUF43. This family includes archaebacterial proteins of unknown function. All the members are 350-400 amino acids long.
Probab=97.76 E-value=8.3e-06 Score=58.65 Aligned_cols=131 Identities=15% Similarity=0.221 Sum_probs=89.9
Q ss_pred CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC----CHHHHHHHC
Q ss_conf 4686056642142112331222233321001333222002444201100012222222222222221----002333201
Q gi|254780875|r 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE----GLFDVIVSN 171 (264)
Q Consensus 96 ~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~----~~fD~IvsN 171 (264)
T Consensus 43 L~Gk~iL~vG-DDDLtSlA~al~~~p~~I~VvDIDeRll~fI~~~A~~~gl--~i~~~~~DlR~pLP~~l~~~FD~f~TD 119 (243)
T pfam01861 43 LEGKEILVLG-DDDLTSLAAALTGLPKRIAVVDIDERLIKFIERVAKEEGL--KIEAFVHDLRNPLPEDLKHKFDVFITD 119 (243)
T ss_pred CCCCEEEEEC-CCCHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCHHHHCCCCEEECC
T ss_conf 5798799972-8618789999648985489996758999999999997499--716887410148999996167989718
Q ss_pred CHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCC---EEEEEECCC---HHHHHHHHHHHCCCC
Q ss_conf 13332100122111112357543321011232102568999998537887---899981766---799999999978980
Q gi|254780875|r 172 PPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDG---LCSVEIGYN---QKVDVVRIFESRKLF 245 (264)
Q Consensus 172 PPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G---~l~lEig~~---q~~~v~~ll~~~gf~ 245 (264)
T Consensus 120 PPyT~~G~---------------------------~LFlsRgi~~Lk~eg~agYfglt~~esS~~kw~~~Qk~l~~~g~v 172 (243)
T pfam01861 120 PPETVDGL---------------------------KAFLGRGIATLKGEGCAGYFGITHRESSLDKWREIQRMLIEMGVV 172 (243)
T ss_pred CCCCHHHH---------------------------HHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHCCEE
T ss_conf 99877899---------------------------999999999826688522687642601499999999999985920
Q ss_pred EEEEEECCCCC
Q ss_conf 58998056899
Q gi|254780875|r 246 LVNAFKDYGGN 256 (264)
Q Consensus 246 ~v~~~kD~~g~ 256 (264)
T Consensus 173 Itdii~~Fn~Y 183 (243)
T pfam01861 173 ITDLIRNFNVY 183 (243)
T ss_pred HHHHHHHHHCC
T ss_conf 99987666305