HHsearch alignment for GI: 254780875 and conserved domain: pfam02527
>pfam02527 GidB rRNA small subunit methyltransferase G. This is a family of bacterial glucose inhibited division proteins these are probably involved in the regulation of cell devision. GidB has been shown to be a methyltransferase G specific to the rRNA small subunit. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. GidB specifically methylates the N7 position of a guanosine in 16S rRNA.
Probab=98.61 E-value=9.2e-08 Score=71.51 Aligned_cols=133 Identities=16% Similarity=0.166 Sum_probs=98.8
Q ss_pred CCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC-CCCHHHHHHHCCHHH
Q ss_conf 6860566421421123312222333210013332220024442011000122222222222222-210023332011333
Q gi|254780875|r 97 DVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS-VEGLFDVIVSNPPYI 175 (264)
Q Consensus 97 ~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~-~~~~fD~IvsNPPYI 175 (264)
T Consensus 48 ~~~~ilDiGSGaGfPGi~LAI~~p~~~~~LvEs~~KK~~FL~~v~~~L~L~-nv~v~~~R~E~~~~~~~~D~v~a----- 121 (184)
T pfam02527 48 IRIKVADVGSGAGFPGIPLAIAFPDKKLTLLESLLKKINFLEELKKELNLE-NVTIVHARAEEYQHEEQYDVITS----- 121 (184)
T ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCC-CEEEEECCHHHCCCCCCCCEEEE-----
T ss_conf 798688347988846799999677855999928289999999999985999-76999560441464467878998-----
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHH---HHHHHHCCCCEEEEEEC
Q ss_conf 210012211111235754332101123210256899999853788789998176679999---99999789805899805
Q gi|254780875|r 176 ESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDV---VRIFESRKLFLVNAFKD 252 (264)
Q Consensus 176 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~q~~~v---~~ll~~~gf~~v~~~kD 252 (264)
T Consensus 122 ------------RA~-------------a~l~~ll~~~~~~l~~~g~~i~~KG~~~~~El~~a~~~~~~l~~~~~-~v~~ 175 (184)
T pfam02527 122 ------------RAV-------------ASLNELTEWALPLLKPGGYFLAYKGKQAEDEIEELDKACQKLGVEVL-FVPS 175 (184)
T ss_pred ------------CHH-------------CCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCEEE-ECCC
T ss_conf ------------100-------------57999999999863889899998899989999987877998297797-6489
Q ss_pred CCCCCEEEE
Q ss_conf 689975999
Q gi|254780875|r 253 YGGNDRVLL 261 (264)
Q Consensus 253 ~~g~~R~vi 261 (264)
T Consensus 176 ~~~~~rh~~ 184 (184)
T pfam02527 176 LGAGDRHLV 184 (184)
T ss_pred CCCCCCCCC
T ss_conf 888778779