HHsearch alignment for GI: 254780875 and conserved domain: pfam03059

>pfam03059 NAS Nicotianamine synthase protein. Nicotianamine synthase EC:2.5.1.43 catalyses the trimerisation of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is great
Probab=97.77  E-value=3.5e-05  Score=54.55  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=87.8

Q ss_pred             CCCEEEEECCCCCCCCC---CC-CCCCCCCCCCCCCCCCCHHHHHHCCCCCC-CCCCCCCCCCCCCCCCC--CHHHHHHH
Q ss_conf             86056642142112331---22-22333210013332220024442011000-12222222222222221--00233320
Q gi|254780875|r   98 VVRILDLGTGTGAVCLA---LL-KESPFFKGVGVDISCKALEIAKSNAVTNG-VSERFDTLQSDWFSSVE--GLFDVIVS  170 (264)
Q Consensus        98 ~~~vLDlG~GsG~i~i~---la-~~~~~~~v~~~Dis~~al~~A~~N~~~~~-~~~~i~~~~~d~~~~~~--~~fD~Ivs  170 (264)
T Consensus       122 p~~vAFI--GSGPLPLTsivLa~~h~~~~~~~niD~d~~A~~~A~~lv~~~g~ls~~m~f~t~d~~~~~~~l~~~DvV~-  198 (277)
T pfam03059       122 PSRIAFI--GSGPLPLTSIVLASYHLPDTSFDNYDIDGLANDRASKLVSSDPDLSSRMSFHTADVLDVTTELKAYDVVF-  198 (277)
T ss_pred             CCEEEEE--CCCCCCHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCHHCCEEEEECCCCCCCCCCCCCCEEE-
T ss_conf             7448996--3788613899998850887314331278899999999998655300472899526444444445476898-


Q ss_pred             CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEE--ECCCHH-HHHHHHHHHCCCCEE
Q ss_conf             11333210012211111235754332101123210256899999853788789998--176679-999999997898058
Q gi|254780875|r  171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVE--IGYNQK-VDVVRIFESRKLFLV  247 (264)
Q Consensus       171 NPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lE--ig~~q~-~~v~~ll~~~gf~~v  247 (264)
T Consensus       199 ----l------------------AALVGm~~--e~K~~I~~hL~k~m~~Ga~l~~Rsa~GlR~~LYp~vd~~~~~GFe~l  254 (277)
T pfam03059       199 ----L------------------AALVGMDK--EEKAKVIDHLGKHMAPGALLVLRSAHGARAFLYPVVDPCDLRGFEVL  254 (277)
T ss_pred             ----E------------------HHHCCCCH--HHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCCCCHHHCCCCEEE
T ss_conf             ----7------------------21135433--35999999999745899679996112178762887896673870799


Q ss_pred             EEEECCCC-CCEEEEEEC
Q ss_conf             99805689-975999979
Q gi|254780875|r  248 NAFKDYGG-NDRVLLFCR  264 (264)
Q Consensus       248 ~~~kD~~g-~~R~vi~~r  264 (264)
T Consensus       255 ~~~hP~~~ViNSvI~~rk  272 (277)
T pfam03059       255 SVYHPTDEVINSVIVARK  272 (277)
T ss_pred             EEECCCCCCEEEEEEEEC
T ss_conf             998899984113899833