HHsearch alignment for GI: 254780875 and conserved domain: pfam05401

>pfam05401 NodS Nodulation protein S (NodS). This family consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors.
Probab=98.54  E-value=4.7e-08  Score=73.42  Aligned_cols=120  Identities=18%  Similarity=0.207  Sum_probs=88.8

Q ss_pred             CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCC-CCHHHHHHHCCH
Q ss_conf             2468605664214211233122223332100133322200244420110001222222222222222-100233320113
Q gi|254780875|r   95 KRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSV-EGLFDVIVSNPP  173 (264)
Q Consensus        95 ~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~-~~~fD~IvsNPP  173 (264)
T Consensus        41 ~~ry~~alE~GCa~G~lT~~LA~RCd--rLla~Dvs~~Av~~Ar~Rla~~---~hV~v~~~~vp~~wP~~~FDLIV~S--  113 (201)
T pfam05401        41 QGTIANALEVGCAAGAFTERLAPYCQ--RLTVIDVMPEAIARARLRMKKW---SHISWIVSDVQQFSTNELFDLIVVA--  113 (201)
T ss_pred             CHHHHHHCCCCCCCCHHHHHHHHHHH--HHHHHCCCHHHHHHHHHHHCCC---CCCEEEECCCCCCCCCCCEEEEEEE--
T ss_conf             34330020435662487899999874--6732136299999999985579---9828982566665998886279751--


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC----------HHHHHHHHHHHC
Q ss_conf             332100122111112357543321011232102568999998537887899981766----------799999999978
Q gi|254780875|r  174 YIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYN----------QKVDVVRIFESR  242 (264)
Q Consensus       174 YI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l~lEig~~----------q~~~v~~ll~~~  242 (264)
T Consensus       114 ------------EVlYYL---------~d~a~lr~~~~~~v~~LaP~G~Lvfgsarda~crrwgh~~gaetv~~~~~e~  171 (201)
T pfam05401       114 ------------EVLYYL---------GDVAEMRGAVRNLVSMLAPDGQLVFGSARDANCRRWGHVAGAETVIALLNES  171 (201)
T ss_pred             ------------HHHHHH---------CCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCHHHHHHHHHHHHHH
T ss_conf             ------------477861---------8799999999999997189965997304510665510111189999999988