HHsearch alignment for GI: 254780875 and conserved domain: pfam05958
>pfam05958 tRNA_U5-meth_tr tRNA (Uracil-5-)-methyltransferase. This family consists of (Uracil-5-)-methyltransferases EC:2.1.1.35 from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity.
Probab=99.02 E-value=7.3e-11 Score=91.92 Aligned_cols=154 Identities=14% Similarity=0.121 Sum_probs=98.8
Q ss_pred EEEEEEECCCCC--HHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 376775046205--122356555310123321101246860566421421123312222333210013332220024442
Q gi|254780875|r 62 NVRLTLSSDTFE--PRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139 (264)
Q Consensus 62 ~~~f~v~~~vLI--PRpeTE~lv~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~ 139 (264)
T Consensus 165 ~~~~~~~p~sFfQvN~~~~~~l~~~a~~~~~----~~~-~~vlDlYcG~Gtfsl~lA~~~~--~V~GvE~~~~AV~~A~~ 237 (353)
T pfam05958 165 EFIYRQVENSFTQPNAAVNIKMLEWACEVTQ----GSK-GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQY 237 (353)
T ss_pred EEEEEECCCCEECCCHHHHHHHHHHHHHHHH----CCC-CCEEEEECCCCHHHHHHHHHCC--EEEEEECCHHHHHHHHH
T ss_conf 2599858999778698999999999999862----689-9589984688888899986478--79999625999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC------------------CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 0110001222222222222222------------------1002333201133321001221111123575433210112
Q gi|254780875|r 140 NAVTNGVSERFDTLQSDWFSSV------------------EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGID 201 (264)
Q Consensus 140 N~~~~~~~~~i~~~~~d~~~~~------------------~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~d 201 (264)
T Consensus 238 Na~~N~i~N-v~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~d~vvlDPPR--------------------------~ 290 (353)
T pfam05958 238 NIAANNIDN-VQIIRMSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPPR--------------------------A 290 (353)
T ss_pred HHHHCCCCC-EEEEECCHHHHHHHHHCCCHHHHCCCCCCCCCCCCCEEECCCC--------------------------C
T ss_conf 899869986-4999728999999875242233203666322467725848987--------------------------7
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHCCCCEEEEE-ECCCCC
Q ss_conf 3210256899999853788789998176-679999999997898058998-056899
Q gi|254780875|r 202 GLSHYRTIADGVSRHLNKDGLCSVEIGY-NQKVDVVRIFESRKLFLVNAF-KDYGGN 256 (264)
Q Consensus 202 Gl~~~~~ii~~~~~~L~~~G~l~lEig~-~q~~~v~~ll~~~gf~~v~~~-kD~~g~ 256 (264)
T Consensus 291 G~~--~~~~~~i~---~~~rIvYVSCnP~TlaRDl~~L~-~-~Y~l~~v~pvDmFPq 340 (353)
T pfam05958 291 GLD--PDTCKLVQ---AYERILYISCNPETLKANLEQLS-E-THRVERFALFDQFPY 340 (353)
T ss_pred CCH--HHHHHHHH---CCCCEEEEECCHHHHHHHHHHHH-C-CCEEEEEEEECCCCC
T ss_conf 773--99999984---69968999489999999999984-0-647879998236999