HHsearch alignment for GI: 254780875 and conserved domain: pfam06962
>pfam06962 rRNA_methylase Putative rRNA methylase. This family contains a number of putative rRNA methylases. Note that many family members are hypothetical proteins.
Probab=97.46 E-value=0.00016 Score=50.17 Aligned_cols=104 Identities=19% Similarity=0.190 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCC---CCCCCC-CHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1001333222002444201100012222222222---222221-002333201133321001221111123575433210
Q gi|254780875|r 123 KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD---WFSSVE-GLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDG 198 (264)
Q Consensus 123 ~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d---~~~~~~-~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~g 198 (264)
T Consensus 1 hV~aFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~~He~l~~~v~~~~i~~~~FNLGYLPggDk~i-----~T-~~~tT--- 71 (140)
T pfam06962 1 HVYAFDIQEEALENTKEKLEQAGLSEIVELILDSHENIDEYIPEGPVKAAIFNLGYLPGGDKSI-----TT-KPDTT--- 71 (140)
T ss_pred CEEEEECHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCCCCC-----EE-CCHHH---
T ss_conf 9579960999999999999965987568999779888986376467668999667688999875-----87-77209---
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCEEEEEE------CCCHHHHHHHHHHHCC
Q ss_conf 11232102568999998537887899981------7667999999999789
Q gi|254780875|r 199 GIDGLSHYRTIADGVSRHLNKDGLCSVEI------GYNQKVDVVRIFESRK 243 (264)
Q Consensus 199 g~dGl~~~~~ii~~~~~~L~~~G~l~lEi------g~~q~~~v~~ll~~~g 243 (264)
T Consensus 72 --------i~Al~~al~lL~~gG~i~i~~Y~GH~gG~eE~~aV~~~~~~L~ 114 (140)
T pfam06962 72 --------LEAIKKLLELLKPGGLIILVIYHGHEEGKKEKDAVLDFVSNLD 114 (140)
T ss_pred --------HHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC
T ss_conf --------9999999996366989999997999987999999999998489