HHsearch alignment for GI: 254780875 and conserved domain: pfam09243
>pfam09243 Rsm22 Mitochondrial small ribosomal subunit Rsm22. Rsm22 has been identified as a mitochondrial small ribosomal subunit and is a methyltransferase. In Schizosaccharomyces pombe, Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria.
Probab=97.47 E-value=0.00019 Score=49.70 Aligned_cols=140 Identities=18% Similarity=0.122 Sum_probs=81.0
Q ss_pred HHHHCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCC-CCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5310123321101246860566421421123312222333-210013332220024442011000122222222222222
Q gi|254780875|r 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160 (264)
Q Consensus 82 v~~~l~~~~~~~~~~~~~~vLDlG~GsG~i~i~la~~~~~-~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~ 160 (264)
T Consensus 19 ~~~vl~Ei~~r~p~f~P~slLD~GsGpGt~~wAa~~~w~~l~~~~~vd~s~~m~~l~~~L~~~~~~~~~~~-~~~~~~~~ 97 (275)
T pfam09243 19 VRASLDELAERVPQFAPLSHLDVGAGPGTALWAASELWPGLEPATVIDASEAALAIGEELARHIPALKHAW-RARDVIGA 97 (275)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCCE-ECCCCCCC
T ss_conf 99999999986799998757772775799999999884247689997489999999999985184345431-11431011
Q ss_pred C--CCHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEE-EEEECCCHH----H
Q ss_conf 2--10023332011333210012211111235754332101123210256899999853788789-998176679----9
Q gi|254780875|r 161 V--EGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC-SVEIGYNQK----V 233 (264)
Q Consensus 161 ~--~~~fD~IvsNPPYI~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~ii~~~~~~L~~~G~l-~lEig~~q~----~ 233 (264)
T Consensus 98 ~~~~~~~DLVi~--sy~----L~El~~~------------------~R~~~v~~LW~~~~--g~LVlVEpGtp~Gf~~I~ 151 (275)
T pfam09243 98 ALDFEPADLVTI--SYV----LDELTPA------------------SREKVIDNLWAKAA--QALVIVEPGTPAGWRRVL 151 (275)
T ss_pred CCCCCCCCEEEE--ECH----HCCCCHH------------------HHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHH
T ss_conf 245898788996--142----2079978------------------99999999999539--979999189817999999
Q ss_pred HHHHHHHHCCCCEEE
Q ss_conf 999999978980589
Q gi|254780875|r 234 DVVRIFESRKLFLVN 248 (264)
Q Consensus 234 ~v~~ll~~~gf~~v~ 248 (264)
T Consensus 152 ~aR~~ll~~g~hivA 166 (275)
T pfam09243 152 EARERLIAAGFHIAA 166 (275)
T ss_pred HHHHHHHHCCCEEEE
T ss_conf 999999868998997