HHsearch alignment for GI: 254780875 and conserved domain: smart00650
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.01 E-value=8.8e-07 Score=65.07 Aligned_cols=80 Identities=19% Similarity=0.241 Sum_probs=60.5
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCC--CHHHHHHHC
Q ss_conf 124686056642142112331222233321001333222002444201100012222222222222221--002333201
Q gi|254780875|r 94 EKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE--GLFDVIVSN 171 (264)
Q Consensus 94 ~~~~~~~vLDlG~GsG~i~i~la~~~~~~~v~~~Dis~~al~~A~~N~~~~~~~~~i~~~~~d~~~~~~--~~fD~IvsN 171 (264)
T Consensus 10 ~~~~~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~~---~n~~ii~~D~L~~~~~~~~~~~iv~N 84 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYKVVGN 84 (169)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHH--CCCCCEEECCHHHHHHHHHHHCCC---CCEEEEECCHHCCCCCCCCCCEEEEC
T ss_conf 8999497999689702999999973--163531637889999999864107---97799957111255311587369934
Q ss_pred CHH-HHHH
Q ss_conf 133-3210
Q gi|254780875|r 172 PPY-IESV 178 (264)
Q Consensus 172 PPY-I~~~ 178 (264)
T Consensus 85 LPY~Iss~ 92 (169)
T smart00650 85 LPYNISTP 92 (169)
T ss_pred CCCCCHHH
T ss_conf 76301189