RPSBLAST alignment for GI: 254780875 and conserved domain: TIGR00479

>gnl|CDD|129571 TIGR00479, rumA, 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. Length = 431
 Score = 39.8 bits (93), Expect = 8e-04
 Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 29/166 (17%)

Query: 29  VLDDRQRFFLTNAIVRSLKHESIHRILG-----------WRDFYN-VRLTLSSDTF-EPR 75
            L+ ++R+    +I +++  E  + I G             +    +  +LS+  F +  
Sbjct: 214 ALELQERYPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKSGDLSFSLSARDFFQVN 273

Query: 76  PE-TELLVDSAL-AFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKA 133
               E LVD AL A  L   E      ++D   G G   L L K++     VG+++  ++
Sbjct: 274 SGQNEKLVDRALEALELQGEE-----LVVDAYCGVGTFTLPLAKQAK--SVVGIEVVPES 326

Query: 134 LEIAKSNAVTNG------VSERFDTLQSDWFSSVEGLFDVIVSNPP 173
           +E A+ NA  NG      ++   +T+      + +   DV++ +PP
Sbjct: 327 VEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQI-PDVLLLDPP 371