RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780875|ref|YP_003065288.1| protoporphyrinogen oxidase
(methyltransferase) protein [Candidatus Liberibacter asiaticus str.
psy62]
(264 letters)
>gnl|CDD|32715 COG2890, HemK, Methylase of polypeptide chain release factors
[Translation, ribosomal structure and biogenesis].
Length = 280
Score = 208 bits (530), Expect = 1e-54
Identities = 98/263 (37%), Positives = 138/263 (52%), Gaps = 8/263 (3%)
Query: 3 ALRDSHSFLCRVTGLSSHQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYN 62
D+ L + G Q++ P++ L + + L + R + E + ILG +F
Sbjct: 21 PNLDAELLLLHLLGKPRDQLLAHPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGG 80
Query: 63 VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFF 122
+R + PRP+TELLV++ALA + RILDLGTG+GA+ +AL KE P
Sbjct: 81 LRFKVDEGVLIPRPDTELLVEAALAL-----LLQLDKRILDLGTGSGAIAIALAKEGPDA 135
Query: 123 KGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDC 182
+ + VDIS AL +A+ NA NG+ R +QSD F + G FD+IVSNPPYI + +
Sbjct: 136 EVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDPE- 193
Query: 183 LGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESR 242
L EV ++P ++L GG DGL YR I L G+ +EIG Q V +FE
Sbjct: 194 LLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGLTQGEAVKALFEDT 253
Query: 243 KLF-LVNAFKDYGGNDRVLLFCR 264
F +V KD G DRV+L
Sbjct: 254 GFFEIVETLKDLFGRDRVVLAKL 276
>gnl|CDD|38115 KOG2904, KOG2904, KOG2904, Predicted methyltransferase [General
function prediction only].
Length = 328
Score = 122 bits (307), Expect = 1e-28
Identities = 75/250 (30%), Positives = 118/250 (47%), Gaps = 13/250 (5%)
Query: 27 DSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSAL 86
D L Q + A ++ K + ILG + F ++ L PRPETE V++ +
Sbjct: 79 DDPLVILQLESIRWACLQRYKRMPLQYILGSQPFGDLDLVCKPGVLIPRPETEEWVEAVI 138
Query: 87 AFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGV 146
+L E ILDLGTG+GA+ L+LL P +D+S A+++AK NA +
Sbjct: 139 D-ALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL 197
Query: 147 SERFD----TLQSDWF---SSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFDPRISLDGG 199
S R + ++SD +EG D++VSNPPYI L EVR ++P+++LDGG
Sbjct: 198 SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGG 257
Query: 200 IDGLSHYRTIADGVSRHLNKDGLCSVE-IGYNQKVDVVRIFESRKLFLVNAF----KDYG 254
++G + +R L G +E + + +VRI+ N D+
Sbjct: 258 LEGYDNLVHYWLLATRMLQPGGFEQLELVERKEHSYLVRIWMISLKDDSNGKAAVVSDFA 317
Query: 255 GNDRVLLFCR 264
G R ++ R
Sbjct: 318 GRPRFVIIHR 327
>gnl|CDD|32642 COG2813, RsmC, 16S RNA G1207 methylase RsmC [Translation, ribosomal
structure and biogenesis].
Length = 300
Score = 72.6 bits (178), Expect = 1e-13
Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141
+D L + ++LDLG G G + L L K+SP K VD++ +A+E A+ N
Sbjct: 143 LDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNL 202
Query: 142 VTNGVSERFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVD 181
NGV E + S+ + VEG FD+I+SNPP+ V
Sbjct: 203 AANGV-ENTEVWASNLYEPVEGKFDLIISNPPFHAGKAVV 241
>gnl|CDD|147386 pfam05175, MTS, Methyltransferase small domain. This domain is
found in ribosomal RNA small subunit methyltransferase C
as well as other methyltransferases .
Length = 170
Score = 68.0 bits (167), Expect = 3e-12
Identities = 38/93 (40%), Positives = 54/93 (58%), Gaps = 2/93 (2%)
Query: 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141
+D L + K ++LDLG G G + AL K SP + VDI+ +ALE A++N
Sbjct: 16 LDIGSRLLLSHLPKPLGGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANL 75
Query: 142 VTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPP 173
NG+ E + SD +S+VE G FD+I+SNPP
Sbjct: 76 AANGL-ENGEVFWSDLYSAVEPGKFDLIISNPP 107
>gnl|CDD|33880 COG4123, COG4123, Predicted O-methyltransferase [General function
prediction only].
Length = 248
Score = 68.0 bits (166), Expect = 3e-12
Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 6/105 (5%)
Query: 82 VDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNA 141
D+ L + + K+ RILDLG G GA+ L L + + K VGV+I +A E+A+ N
Sbjct: 31 TDAILLAAFAPVPKKG--RILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNV 88
Query: 142 VTNGVSERFDTLQSD----WFSSVEGLFDVIVSNPPYIESVIVDC 182
N + ER +++D + V FD+I+ NPPY +
Sbjct: 89 ALNPLEERIQVIEADIKEFLKALVFASFDLIICNPPYFKQGSRLN 133
>gnl|CDD|38401 KOG3191, KOG3191, KOG3191, Predicted N6-DNA-methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 209
Score = 65.0 bits (158), Expect = 2e-11
Identities = 48/185 (25%), Positives = 81/185 (43%), Gaps = 11/185 (5%)
Query: 63 VRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKE-SPF 121
+ SD +EP +T LL+D AL ++ + L++G G+G V L P
Sbjct: 10 LIRLDFSDVYEPAEDTFLLLD-ALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQ 68
Query: 122 FKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSSVE-GLFDVIVSNPPYIESVIV 180
+ DI+ +ALE A N V D +++D S + DV+V NPPY+ +
Sbjct: 69 ALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSGLRNESVDVLVFNPPYVPTS-D 125
Query: 181 DCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLC-SVEIGYNQKVDVVRIF 239
+ +G E + GG DG + V L+ G+ V + N+ ++++I
Sbjct: 126 EEIGDEGIAS----AWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKIL 181
Query: 240 ESRKL 244
E +
Sbjct: 182 EKKGY 186
>gnl|CDD|30465 COG0116, COG0116, Predicted N6-adenine-specific DNA methylase [DNA
replication, recombination, and repair].
Length = 381
Score = 55.3 bits (133), Expect = 2e-08
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 21/141 (14%)
Query: 117 KESPFFKGVGVDISCKALEIAKSNAVTNGVSER--FDTLQSDWFSSVEGLFDVIVSNPPY 174
+ G DI + +E AK+NA GV + F + + V++SNPPY
Sbjct: 250 RGKELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY 309
Query: 175 IESVIVDCLGLEVRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVD 234
E R+ + + L YR + R L V +
Sbjct: 310 GE----------------RLGSEALVAKL--YREFGRTLKRLLAGWSR-YVFTTSEDLLF 350
Query: 235 VVRIFESRKLFLVNAFKDYGG 255
+ + +K L N GG
Sbjct: 351 CLGLRADKKRKLYNGPLKCGG 371
>gnl|CDD|32445 COG2264, PrmA, Ribosomal protein L11 methylase [Translation,
ribosomal structure and biogenesis].
Length = 300
Score = 51.4 bits (123), Expect = 3e-07
Identities = 55/178 (30%), Positives = 75/178 (42%), Gaps = 30/178 (16%)
Query: 69 SDTFEPRPETELLV--DSALAF----------SLPRIEKRD--VVRILDLGTGTGAVCLA 114
S P P EL + D LAF L +EK +LD+G G+G + +A
Sbjct: 120 SWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIA 179
Query: 115 LLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS----VEGLFDVIVS 170
K K VGVDI +A+E A+ NA NGV +Q+ F G FDVIV+
Sbjct: 180 AAKLGAK-KVVGVDIDPQAVEAARENARLNGVELL---VQAKGFLLLEVPENGPFDVIVA 235
Query: 171 NPPYIESVIVDCLGLEVRDFDPRISLDGGIDGLSH-YRTIADGVSRHLNKDGLCSVEI 227
N + V+V+ R P GG LS A+ V+ + G VE+
Sbjct: 236 N--ILAEVLVELAPDIKRLLKP-----GGRLILSGILEDQAESVAEAYEQAGFEVVEV 286
>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent
methyltransferases (SAM or AdoMet-MTase), class I;
AdoMet-MTases are enzymes that use
S-adenosyl-L-methionine (SAM or AdoMet) as a substrate
for methyltransfer, creating the product
S-adenosyl-L-homocysteine (AdoHcy). There are at least
five structurally distinct families of AdoMet-MTases,
class I being the largest and most diverse. Within this
class enzymes can be classified by different substrate
specificities (small molecules, lipids, nucleic acids,
etc.) and different target atoms for methylation
(nitrogen, oxygen, carbon, sulfur, etc.)..
Length = 107
Score = 50.9 bits (122), Expect = 4e-07
Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 5/82 (6%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
R+LDLG GTGA+ LAL P + GVDIS ALE+A+ A +++ + L+ D
Sbjct: 1 RVLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAA-AALLADNVEVLKGDAEE 58
Query: 160 SVEGL---FDVIVSNPPYIESV 178
FDVI+S+PP V
Sbjct: 59 LPPEADESFDVIISDPPLHHLV 80
>gnl|CDD|32444 COG2263, COG2263, Predicted RNA methylase [Translation, ribosomal
structure and biogenesis].
Length = 198
Score = 46.4 bits (110), Expect = 7e-06
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
+LDLG GTG + + + + VDI +ALEIA++NA + + +D S
Sbjct: 48 TVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLG--DVEFVVAD-VS 103
Query: 160 SVEGLFDVIVSNPPY 174
G FD ++ NPP+
Sbjct: 104 DFRGKFDTVIMNPPF 118
>gnl|CDD|36485 KOG1271, KOG1271, KOG1271, Methyltransferases [General function
prediction only].
Length = 227
Score = 46.5 bits (110), Expect = 8e-06
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 12/96 (12%)
Query: 78 TELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137
+ L D + R+ K R+LDLGTG G + L KE K GVD S KA+E+A
Sbjct: 52 VDWLKDLIVIS---RVSK-QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELA 107
Query: 138 KSNAVTNGVS-----ERFDTLQSDWFSSVEGLFDVI 168
++ A +G S ++ D D+ S G FD++
Sbjct: 108 QNIAERDGFSNEIRFQQLDITDPDFLS---GQFDLV 140
>gnl|CDD|32409 COG2227, UbiG,
2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol
methylase [Coenzyme metabolism].
Length = 243
Score = 44.9 bits (106), Expect = 2e-05
Identities = 27/92 (29%), Positives = 44/92 (47%), Gaps = 7/92 (7%)
Query: 99 VRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF 158
+R+LD+G G G + L + G+D S K +E+AK +A+ +GV+ + +
Sbjct: 61 LRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDL 118
Query: 159 SSVEGLFDVIVSNP-----PYIESVIVDCLGL 185
+S G FDV+ P ES + C L
Sbjct: 119 ASAGGQFDVVTCMEVLEHVPDPESFLRACAKL 150
>gnl|CDD|110191 pfam01170, UPF0020, Putative RNA methylase family UPF0020. This
domain is probably a methylase. It is associated with
the THUMP domain that also occurs with RNA modification
domains.
Length = 171
Score = 44.6 bits (106), Expect = 3e-05
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 100 RILD--LGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSD- 156
+LD G+GT + AL+ + G DI + + A+ NA GV ++ + +Q+D
Sbjct: 31 PLLDPFCGSGTILIEAALMGANVAL--YGSDIDRRMVRGARINAEAAGVGDKIEFVQADA 88
Query: 157 -WFSSVEGLFDVIVSNPPYIES 177
+ G D IV++PPY
Sbjct: 89 ADLPLLNGSVDTIVTDPPYGIR 110
>gnl|CDD|32052 COG1867, TRM1, N2,N2-dimethylguanosine tRNA methyltransferase
[Translation, ribosomal structure and biogenesis].
Length = 380
Score = 44.1 bits (104), Expect = 3e-05
Identities = 33/128 (25%), Positives = 51/128 (39%), Gaps = 23/128 (17%)
Query: 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES 119
FYN + + D L V AF K R+LD + TG + E+
Sbjct: 29 FYNPAMEFNRD---------LSVLVLKAFG-----KLLPKRVLDALSATGIRGIRYAVET 74
Query: 120 PFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWF---SSVEGLFDVIVSNP---- 172
K V DIS KA+E+ K N N + + + D + FDVI +P
Sbjct: 75 GVVKVVLNDISPKAVELIKENVRLNSGEDA-EVINKDANALLHELHRAFDVIDIDPFGSP 133
Query: 173 -PYIESVI 179
P++++ +
Sbjct: 134 APFLDAAL 141
>gnl|CDD|32446 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA
(uracil-5-)-methyltransferase [Translation, ribosomal
structure and biogenesis].
Length = 432
Score = 43.4 bits (102), Expect = 6e-05
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 25/158 (15%)
Query: 33 RQRFFLTNAIVRSLKHESIHRILGWRDFYN---------VRLTLSSDTF-EPRPE-TELL 81
+ F IV+++ + I G + V +S +F + P E L
Sbjct: 222 LEAFPEIKGIVQNINRAKTNVIEGDEEITLYGLESIREGVSFQISPRSFFQVNPAVAEKL 281
Query: 82 VDSALAFSLPRIEKRDVVRILDL--GTGTGAVCLALLKESPFFKGVGVDISCKALEIAKS 139
++AL + +E R+LDL G GT + LA K GV+IS +A+E A+
Sbjct: 282 YETALEW----LELAGGERVLDLYCGVGTFGLPLA----KRVKKVHGVEISPEAVEAAQE 333
Query: 140 NAVTNGVS-ERFDTLQSDWFSSV---EGLFDVIVSNPP 173
NA NG+ F ++ F+ DV+V +PP
Sbjct: 334 NAAANGIDNVEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371
>gnl|CDD|31289 COG1092, COG1092, Predicted SAM-dependent methyltransferases
[General function prediction only].
Length = 393
Score = 41.5 bits (97), Expect = 2e-04
Identities = 24/81 (29%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE-RFDTLQSDWF 158
R+L+L + TG + + VD+S +ALE A+ NA NG+ R + D F
Sbjct: 220 RVLNLFSYTGGFSVHAALGGAS-EVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVF 278
Query: 159 SSVEGL------FDVIVSNPP 173
+ FD+I+ +PP
Sbjct: 279 KWLRKAERRGEKFDLIILDPP 299
>gnl|CDD|32408 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone
biosynthesis [Coenzyme metabolism].
Length = 238
Score = 40.6 bits (95), Expect = 4e-04
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 81 LVDSALAFSLPRIEKRDVV---------RILDLGTGTGAVCLALLKESPFFKGVGVDISC 131
L++ ++F L R+ +R ++ ++LD+ GTG + L L K + VG+DIS
Sbjct: 26 LMNDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE 85
Query: 132 KALEIAKSNAVTNGVS 147
LE+A+ GV
Sbjct: 86 SMLEVAREKLKKKGVQ 101
>gnl|CDD|30634 COG0286, HsdM, Type I restriction-modification system
methyltransferase subunit [Defense mechanisms].
Length = 489
Score = 39.6 bits (92), Expect = 0.001
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 19/114 (16%)
Query: 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCL---ALLKESPFFKGV-GV 127
+ PR +EL+V+ L E R+ I D G+G + L LK + G
Sbjct: 169 YTPREVSELIVE------LLDPEPRN--SIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ 220
Query: 128 DISCKALEIAKSNAVTNGVSERF-----DTLQSDWFSS--VEGLFDVIVSNPPY 174
+I+ +AK N + +G+ DTL + +G FD +++NPP+
Sbjct: 221 EINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFDFVIANPPF 274
>gnl|CDD|111293 pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification
(R-M) systems protect a bacterial cell against invasion
of foreign DNA by endonucleolytic cleavage of DNA that
lacks a site specific modification. The R-M system is a
complex containing three polypeptides: M (this family),
S (pfam01420), and R. This family consists of N-6
adenine-specific DNA methylase EC:2.1.1.72 from Type I
and Type IC restriction systems. These methylases have
the same sequence specificity as their corresponding
restriction enzymes.
Length = 312
Score = 38.8 bits (91), Expect = 0.002
Identities = 29/119 (24%), Positives = 51/119 (42%), Gaps = 28/119 (23%)
Query: 72 FEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKG------- 124
+ PR ++L+V+ +E + I D G+G L++ F K
Sbjct: 29 YTPREVSKLIVE--------LLEPKPGESIYDPACGSGGF---LIQADKFVKSHDGDTND 77
Query: 125 ---VGVDISCKALEIAKSNAVTNGVS-ERF-----DTLQSDWFSSVEGLFDVIVSNPPY 174
G +++ +A+ N + +G+ F DTL S F + FDV+V+NPP+
Sbjct: 78 ISIYGQELNPTTYRLARMNMILHGIEYNDFGIRHGDTLLSPKFEEDKK-FDVVVANPPF 135
>gnl|CDD|32411 COG2230, Cfa, Cyclopropane fatty acid synthase and related
methyltransferases [Cell envelope biogenesis, outer
membrane].
Length = 283
Score = 38.3 bits (89), Expect = 0.002
Identities = 20/71 (28%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
+LD+G G G + + +E VGV +S + L A+ G+ + + D+
Sbjct: 75 TLLDIGCGWGGLAIYAAEEYG-VTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY-R 132
Query: 160 SVEGLFDVIVS 170
E FD IVS
Sbjct: 133 DFEEPFDRIVS 143
>gnl|CDD|32423 COG2242, CobL, Precorrin-6B methylase 2 [Coenzyme metabolism].
Length = 187
Score = 37.1 bits (86), Expect = 0.005
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 85 ALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTN 144
AL S R D R+ D+G GTG++ + P + + ++ +ALE+ + NA
Sbjct: 24 ALTLSKLRPRPGD--RLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF 81
Query: 145 GVS 147
GV
Sbjct: 82 GVD 84
>gnl|CDD|38630 KOG3420, KOG3420, KOG3420, Predicted RNA methylase [Translation,
ribosomal structure and biogenesis].
Length = 185
Score = 36.9 bits (85), Expect = 0.006
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
++ DLG G G + +A +G DI +ALEI NA V + D LQ D
Sbjct: 51 KLKDLGCGCGMLSIAFSMPKNESV-LGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILD 107
Query: 160 --SVEGLFDVIVSNPPY 174
G+FD V NPP+
Sbjct: 108 LELKGGIFDTAVINPPF 124
>gnl|CDD|32589 COG2519, GCD14, tRNA(1-methyladenosine) methyltransferase and
related methyltransferases [Translation, ribosomal
structure and biogenesis].
Length = 256
Score = 36.4 bits (84), Expect = 0.008
Identities = 28/152 (18%), Positives = 52/152 (34%), Gaps = 7/152 (4%)
Query: 22 VIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSS--DTFEPRPETE 79
V + P + ++ E I LG FY ++ T + + R +
Sbjct: 20 VRLTPGEKFHTDLGIIPHDEVIGKPYGEVIKSHLG-VKFYVLKPTPEDYLLSMKRRTQII 78
Query: 80 LLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLK-ESPFFKGVGVDISCKALEIAK 138
D+ + I R+L+ GTG+GA+ L + P +I + A+
Sbjct: 79 YPKDAGYIVARLGISPGS--RVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTAR 136
Query: 139 SNAVTNGVSERFDTLQSDWFSSVEGL-FDVIV 169
N G+ +R D ++ D +
Sbjct: 137 ENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF 168
>gnl|CDD|37941 KOG2730, KOG2730, KOG2730, Methylase [General function prediction
only].
Length = 263
Score = 36.1 bits (83), Expect = 0.010
Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
I+D G G + + P+ + +DI + A+ NA GV +R + D+
Sbjct: 97 VIVDAFCGVGGNTIQFALQGPYV--IAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154
Query: 160 SVEGL------FDVIVSNPPY 174
L +D + +PP+
Sbjct: 155 LASKLKADKIKYDCVFLSPPW 175
>gnl|CDD|31085 COG0742, COG0742, N6-adenine-specific methylase [DNA replication,
recombination, and repair].
Length = 187
Score = 35.6 bits (82), Expect = 0.013
Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
R+LDL G+GA+ L L + V V+ KA++I K N G+ L++D
Sbjct: 46 RVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALR 104
Query: 160 SVEGL-----FDVIVSNPPYIESVIVDCLGL 185
+++ L FD++ +PPY + ++ L L
Sbjct: 105 ALKQLGTREPFDLVFLDPPYAKGLLDKELAL 135
>gnl|CDD|37398 KOG2187, KOG2187, KOG2187, tRNA uracil-5-methyltransferase and
related tRNA-modifying enzymes [Translation, ribosomal
structure and biogenesis].
Length = 534
Score = 34.6 bits (79), Expect = 0.030
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSE-RFDTLQS-DWF 158
+LD+ GTG + LAL + +GV+IS A+E A+ NA NG+S F Q+ D F
Sbjct: 387 LLDVCCGTGTIGLAL--ARGVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLF 444
Query: 159 SSVEG-LFD----VIVSNPP 173
S+ D V + +PP
Sbjct: 445 PSLLTPCCDSETLVAIIDPP 464
>gnl|CDD|32943 COG3129, COG3129, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 292
Score = 34.2 bits (78), Expect = 0.033
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 12/89 (13%)
Query: 99 VRILDLGTGTGAVCL-ALLKESPF-FKGVGVDISCKALEIAKSNAVTNGVSERFDTL--Q 154
+RILD+G G A C+ L+ + ++ VG +I ++L AK+ N ER L Q
Sbjct: 80 IRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQ 137
Query: 155 SD---WFSSVEGL---FDVIVSNPPYIES 177
D F+ + G +D + NPP+ +S
Sbjct: 138 KDSDAIFNGIIGKNERYDATLCNPPFHDS 166
>gnl|CDD|32530 COG2384, COG2384, Predicted SAM-dependent methyltransferase
[General function prediction only].
Length = 226
Score = 34.1 bits (78), Expect = 0.038
Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 96 RDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQS 155
+ RI D+G+ + + L+K +P V ++ LE A N N +SER D
Sbjct: 15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLG 74
Query: 156 DWFSSVE--GLFDVIV 169
D + +E DVIV
Sbjct: 75 DGLAVLELEDEIDVIV 90
>gnl|CDD|33985 COG4262, COG4262, Predicted spermidine synthase with an N-terminal
membrane domain [General function prediction only].
Length = 508
Score = 33.0 bits (75), Expect = 0.085
Identities = 39/157 (24%), Positives = 59/157 (37%), Gaps = 30/157 (19%)
Query: 78 TELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIA 137
E LV AL+ + +L LG G G LLK + VD+ + +E+A
Sbjct: 276 HESLVYPALSS-VRGAR-----SVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELA 329
Query: 138 KSNAVTNGVSE------RFDTLQSDWFSSVEGLFDVIVSNPPYIESVIVDCLGLEVRDFD 191
V +++ R + D F + D+ + VIVD D
Sbjct: 330 SHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADM-------FDVVIVDLP-------D 375
Query: 192 PRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIG 228
P G + + YR + SRHL + GL V+ G
Sbjct: 376 PSTPSIGRLYSVEFYRLL----SRHLAETGLMVVQAG 408
>gnl|CDD|37572 KOG2361, KOG2361, KOG2361, Predicted methyltransferase [General
function prediction only].
Length = 264
Score = 33.0 bits (75), Expect = 0.089
Identities = 32/137 (23%), Positives = 52/137 (37%), Gaps = 11/137 (8%)
Query: 44 RSLKHESIHRILG-WRDFYNVRLTLSSDTFEPRPETELLVDSALAF----SLPRIEKRDV 98
+ +K +S R+L Y + DTF E D L ++++
Sbjct: 13 KKVKEQSASRVLEEEVVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVDEKSA 72
Query: 99 VRILDLGTGTGAVCLALLKESP--FFKGVGVDISCKALEIAKSNA---VTNGVSERFDTL 153
IL++G G G LLK SP K D S +A+E+ K ++ + + +D
Sbjct: 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLT 132
Query: 154 QSDWFSSVE-GLFDVIV 169
E G D+I
Sbjct: 133 SPSLKEPPEEGSVDIIT 149
>gnl|CDD|145274 pfam02005, TRM, N2,N2-dimethylguanosine tRNA methyltransferase.
This enzyme EC:2.1.1.32 used S-AdoMet to methylate tRNA.
The TRM1 gene of Saccharomyces cerevisiae is necessary
for the N2,N2-dimethylguanosine modification of both
mitochondrial and cytoplasmic tRNAs. The enzyme is found
in both eukaryotes and archaebacteria.
Length = 375
Score = 32.3 bits (74), Expect = 0.13
Identities = 32/129 (24%), Positives = 49/129 (37%), Gaps = 18/129 (13%)
Query: 60 FYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKES 119
FYN R+ + D L V +L + + +LD + +G + E
Sbjct: 21 FYNPRMEFNRD---------LSVTVIRQLNLLHKKLGRGIIVLDALSASGIRAIRFALEV 71
Query: 120 PFFKGVGV-DISCKALEIAKSNAVTNGVSERFDTLQSD---WFSSVEGLFDVIVSNP--- 172
P + V DIS KA+E+ K N N V D FDVI +P
Sbjct: 72 PGVEEVFANDISPKAVELIKENVKLNEVENIVVINGDDANMLMRENHRRFDVIDLDPFGS 131
Query: 173 --PYIESVI 179
P+++S +
Sbjct: 132 PAPFLDSAV 140
>gnl|CDD|30846 COG0500, SmtA, SAM-dependent methyltransferases [Secondary
metabolites biosynthesis, transport, and catabolism /
General function prediction only].
Length = 257
Score = 31.7 bits (68), Expect = 0.20
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 100 RILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFS 159
+LD+G GTG + L VGVD+S + L +A++ A G+ D + +D
Sbjct: 51 GVLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGL-GLVDFVVADALG 109
Query: 160 SVEGL-----FDVIVSNPPY 174
V FD+++S
Sbjct: 110 GVLPFEDSASFDLVISLLVL 129
>gnl|CDD|111429 pfam02527, GidB, rRNA small subunit methyltransferase G. This is a
family of bacterial glucose inhibited division proteins
these are probably involved in the regulation of cell
devision. GidB has been shown to be a methyltransferase
G specific to the rRNA small subunit. Previously
identified as a glucose-inhibited division protein B
that appears to be present and in a single copy in all
complete eubacterial genomes so far sequenced. GidB
specifically methylates the N7 position of a guanosine
in 16S rRNA.
Length = 184
Score = 31.1 bits (71), Expect = 0.30
Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 53 RILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG--A 110
+L W N R L+S T L+DS + +++ D+G+G G
Sbjct: 11 LLLEW----NKRYNLTSITEPNELLERHLLDSLVVLEY---LDNIRIKVADVGSGAGFPG 63
Query: 111 VCLAL-------------LKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDW 157
+ LA+ LK+ F + + +++ + + I + A E++D + S
Sbjct: 64 IPLAIAFPDKKLTLLESLLKKINFLEELKKELNLENVTIVHARAEEYQHEEQYDVITSRA 123
Query: 158 FSSVEGLFD 166
+S+ L +
Sbjct: 124 VASLNELTE 132
>gnl|CDD|32590 COG2520, COG2520, Predicted methyltransferase [General function
prediction only].
Length = 341
Score = 31.0 bits (70), Expect = 0.37
Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 78 TELLVDSALAFSLPR--IEKRDVV-------RILDLGTGTGAVCLALLKESPFFKGVGVD 128
VD A + PR E+ V +LD+ G G + + K+ K +D
Sbjct: 160 CRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRP-KVYAID 218
Query: 129 ISCKALEIAKSNAVTNGVSERFDTLQSD--WFSSVEGLFDVIVSNPPY 174
I+ A+E K N N V R + + D + G+ D I+ P
Sbjct: 219 INPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLPK 266
>gnl|CDD|33879 COG4122, COG4122, Predicted O-methyltransferase [General function
prediction only].
Length = 219
Score = 30.7 bits (69), Expect = 0.45
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 8/75 (10%)
Query: 76 PETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF-FKGVGVDISCKAL 134
PET L+ S P+ RIL++GT G L + P + ++ +
Sbjct: 45 PETGALLRLLARLSGPK-------RILEIGTAIGYSALWMALALPDDGRLTTIERDEERA 97
Query: 135 EIAKSNAVTNGVSER 149
EIA+ N GV +R
Sbjct: 98 EIARENLAEAGVDDR 112
>gnl|CDD|34582 COG4976, COG4976, Predicted methyltransferase (contains TPR repeat)
[General function prediction only].
Length = 287
Score = 30.3 bits (68), Expect = 0.49
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 16/77 (20%)
Query: 69 SDTFEPRPETELLVDSALAFSLP--------RIEKRDVVRILDLGTGTGAVCLALLKESP 120
++ F+ +LVD L +S+P + + R+LDLG GTG AL +
Sbjct: 95 AERFD-----HILVDK-LGYSVPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMAD 148
Query: 121 FFKGVGVDISCKALEIA 137
GVDIS L A
Sbjct: 149 RLT--GVDISENMLAKA 163
>gnl|CDD|39261 KOG4058, KOG4058, KOG4058, Uncharacterized conserved protein
[Function unknown].
Length = 199
Score = 30.0 bits (67), Expect = 0.64
Identities = 19/104 (18%), Positives = 44/104 (42%), Gaps = 2/104 (1%)
Query: 86 LAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNG 145
+ L + +++DLG+G G + LA + VGV+++ + ++ +A G
Sbjct: 61 VENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAG 119
Query: 146 VSERFDTLQSD-WFSSVEGLFDVIVSNPPYIESVIVDCLGLEVR 188
++ + D W + +V++ + + D L E+
Sbjct: 120 CAKSTRFRRKDLWKVDLRDYRNVVIFGAESVMPDLEDKLRTELP 163
>gnl|CDD|30380 COG0030, KsgA, Dimethyladenosine transferase (rRNA methylation)
[Translation, ribosomal structure and biogenesis].
Length = 259
Score = 29.8 bits (67), Expect = 0.69
Identities = 19/87 (21%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 93 IEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISC-----KALEIAKSNAVTNGVS 147
+L++G G GA+ LL+ + + +D + + V NG
Sbjct: 26 ANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVING-- 83
Query: 148 ERFDTLQSDWFSSVEGLFDVIVSNPPY 174
D L+ D+ S + +V+N PY
Sbjct: 84 ---DALKFDFPSLAQ--PYKVVANLPY 105
>gnl|CDD|31543 COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins
[Cell motility and secretion / Signal transduction
mechanisms].
Length = 268
Score = 29.9 bits (67), Expect = 0.72
Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 10/92 (10%)
Query: 57 WRDFYNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG------A 110
+ F + LT++ F PE + + L + +K +RI TG A
Sbjct: 57 LQAFLD-ALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLA 115
Query: 111 VCLA---LLKESPFFKGVGVDISCKALEIAKS 139
+ L K + DI LE A++
Sbjct: 116 MLLLEALGKLAGFRVKILATDIDLSVLEKARA 147
>gnl|CDD|36874 KOG1661, KOG1661, KOG1661, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase [Posttranslational modification,
protein turnover, chaperones].
Length = 237
Score = 29.9 bits (67), Expect = 0.78
Identities = 24/122 (19%), Positives = 44/122 (36%), Gaps = 17/122 (13%)
Query: 31 DDRQRFFLTNAIVRSLKHESIHRILGWRDFYNVRLTLSSDTFEPRPETELLVDSALAFSL 90
DD N I+R+ + E R D+ + P+ + L S
Sbjct: 11 DDLIDNLRENKIIRTRRVEQAMRATDRSDYAPRSERTNPYMDSPQK-----IGYNLTISA 65
Query: 91 PRIEK------RDVVR----ILDLGTGTG--AVCLALLKESPFFKGVGVDISCKALEIAK 138
P + D ++ LD+G+G+G C A + + G++ + +E +K
Sbjct: 66 PHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSK 125
Query: 139 SN 140
N
Sbjct: 126 KN 127
>gnl|CDD|30770 COG0421, SpeE, Spermidine synthase [Amino acid transport and
metabolism].
Length = 282
Score = 29.2 bits (65), Expect = 1.1
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 12/109 (11%)
Query: 69 SDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVD 128
+ E+L L + P + R+L +G G G +LK P + V+
Sbjct: 54 LTERDEFIYHEMLAHVPL-LAHPNPK-----RVLIIGGGDGGTLREVLKHLPVERITMVE 107
Query: 129 ISCKALEIAKS---NAVTNGVSERFDTLQSD---WFSSVEGLFDVIVSN 171
I +E+A+ R + + D + E FDVI+ +
Sbjct: 108 IDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156
>gnl|CDD|33863 COG4106, Tam, Trans-aconitate methyltransferase [General function
prediction only].
Length = 257
Score = 29.1 bits (65), Expect = 1.1
Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 14/97 (14%)
Query: 75 RPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKAL 134
RP +LL R+ R++DLG G G L + P G+D S L
Sbjct: 17 RPARDLLA---------RVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAML 67
Query: 135 EIAKSNAVTNGVSERFDTLQSDWFSSVEGLFDVIVSN 171
A + + E D W D++ +N
Sbjct: 68 AKAAQ-RLPDATFEEADL--RTWKPEQP--TDLLFAN 99
>gnl|CDD|38220 KOG3010, KOG3010, KOG3010, Methyltransferase [General function
prediction only].
Length = 261
Score = 29.1 bits (65), Expect = 1.2
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138
D+GTG G + + + + D+S L++AK
Sbjct: 37 AWDVGTGNGQAARGI--AEHYKEVIATDVSEAMLKVAK 72
>gnl|CDD|36754 KOG1541, KOG1541, KOG1541, Predicted protein carboxyl methylase
[General function prediction only].
Length = 270
Score = 28.8 bits (64), Expect = 1.6
Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVS 147
ILD+G G+G L + +GVDIS LE A + +
Sbjct: 54 ILDIGCGSGLSGSVLSDSGHQW--IGVDISPSMLEQAVERELEGDLI 98
>gnl|CDD|36038 KOG0820, KOG0820, KOG0820, Ribosomal RNA adenine dimethylase [RNA
processing and modification].
Length = 315
Score = 28.8 bits (64), Expect = 1.6
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCK-ALEIAKSNAVTNGVSERFDTLQSDWFS 159
+L++G GTG + + LL+ K V V+I + E+ K T S + L D+
Sbjct: 62 VLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTP-KSGKLQVLHGDFLK 118
Query: 160 SVEGLFDVIVSNPPY 174
+ FD VSN PY
Sbjct: 119 TDLPRFDGCVSNLPY 133
>gnl|CDD|147130 pfam04816, DUF633, Family of unknown function (DUF633). This
family of proteins are uncharacterized have no known
function.
Length = 204
Score = 28.4 bits (64), Expect = 1.8
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160
+ D+G+ + + L+K + + +++ L+ A N +G++ER D D +
Sbjct: 1 LADIGSDHAYLPIYLVKNNLASFAIAGEVNKGPLQSAVKNVKKSGLTERIDVRLGDGLAV 60
Query: 161 VE--GLFDVIV 169
+E L DVIV
Sbjct: 61 IEELDLIDVIV 71
>gnl|CDD|30706 COG0357, GidB, Predicted S-adenosylmethionine-dependent
methyltransferase involved in bacterial cell division
[Cell envelope biogenesis, outer membrane].
Length = 215
Score = 28.4 bits (63), Expect = 2.0
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 10/71 (14%)
Query: 61 YNVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTG--AVCLALLKE 118
+N L++ ++DS + R+LD+G+G G + LA+
Sbjct: 34 WNKAYNLTAIRDPEELWQRHILDSLVLL---PYLDGKAKRVLDIGSGAGFPGIPLAI--- 87
Query: 119 SPFFKGVGVDI 129
F + V +
Sbjct: 88 --AFPDLKVTL 96
>gnl|CDD|110158 pfam01135, PCMT, Protein-L-isoaspartate(D-aspartate)
O-methyltransferase (PCMT).
Length = 205
Score = 28.1 bits (63), Expect = 2.3
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 87 AFSLPRIEKRDVVRILDLGTGTG--AVCLALLKESPFFKGVGVDISCKALEIAKSN 140
A L +E + +R+L++G+G+G C A + + V ++ + +EIA+ N
Sbjct: 63 AMMLELLELKPGMRVLEIGSGSGYLTACFARMV-GEVGRVVSIEHIPELVEIARRN 117
>gnl|CDD|144964 pfam01564, Spermine_synth, Spermine/spermidine synthase. Spermine
and spermidine are polyamines. This family includes
spermidine synthase that catalyses the fifth (last) step
in the biosynthesis of spermidine from arginine, and
spermine synthase.
Length = 240
Score = 28.0 bits (63), Expect = 2.5
Identities = 36/155 (23%), Positives = 54/155 (34%), Gaps = 40/155 (25%)
Query: 77 ETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEI 136
E++ L S P +K +L +G G G ++K K V+I K +E
Sbjct: 61 YHEMIAHVPL-CSHPNPKK-----VLIIGGGDGGALREVVKHPSVEKITLVEIDEKVIEF 114
Query: 137 AKSNAVTNGVS---ERFDTLQSDWFSSVEGL---FDVIVSNPPYIESVIVDCLGLEVRDF 190
+K + R + D F ++ FDVI IVD
Sbjct: 115 SKKFLPSLAGGFDDPRVKVVIGDGFKFLKDYLVKFDVI----------IVDST------- 157
Query: 191 DPRISLDGGIDGL---SHYRTIADGVSRHLNKDGL 222
DP G + L Y D + R L +DG+
Sbjct: 158 DP----VGPAENLFSKEFY----DLLKRALKEDGV 184
>gnl|CDD|36753 KOG1540, KOG1540, KOG1540, Ubiquinone biosynthesis
methyltransferase COQ5 [Coenzyme transport and
metabolism].
Length = 296
Score = 27.6 bits (61), Expect = 3.2
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 6/64 (9%)
Query: 92 RIEKRDVVRILDLGTGTGAVCLALLKESPFFKG------VGVDISCKALEIAKSNAVTNG 145
++ +++LD+ GTG + +L+ G +DI+ L + K A
Sbjct: 95 KLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRP 154
Query: 146 VSER 149
+
Sbjct: 155 LKAS 158
>gnl|CDD|153374 cd07362, HPCD_like, Class III extradiol dioxygenases with
similarity to homoprotocatechuate 2,3-dioxygenase, which
catalyzes the key ring cleavage step in the metabolism
of homoprotocatechuate. This subfamily of class III
extradiol dioxygenases consists of two types of
proteins with known enzymatic activities;
3,4-dihydroxyphenylacetate (homoprotocatechuate)
2,3-dioxygenase (HPCD) and 2-amino-5-chlorophenol
1,6-dioxygenase. HPCD catalyzes the key ring cleavage
step in the metabolism of homoprotocatechuate (hpca), a
central intermediate in the bacterial degradation of
aromatic compounds. The enzyme incorporates both atoms
of molecular oxygen into hpca, resulting in aromatic
ring-opening to yield the product
alpha-hydroxy-delta-carboxymethyl cis-muconic
semialdehyde. 2-amino-5-chlorophenol 1,6-dioxygenase
catalyzes the oxidization and subsequent ring-opening of
2-amino-5-chlorophenol, which is an intermediate during
p-chloronitrobenzene degradation. The enzyme is probably
a heterotetramer composed of two alpha and two beta
subunits. Alpha and beta subunits share significant
sequence similarity and both belong to this family. Like
all Class III extradiol dioxygenases, these enzymes use
a non-heme Fe(II) to cleave aromatic rings between a
hydroxylated carbon and an adjacent non-hydroxylated
carbon.
Length = 272
Score = 27.5 bits (61), Expect = 4.3
Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 3/61 (4%)
Query: 79 ELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAK 138
LLV+ L D I D GT V L L + V + A + +
Sbjct: 96 RLLVEEGQEAGLRVKAVNDPTYIWDYGT---VVPLRYLNPNKDIPVVSISACWTAASLEE 152
Query: 139 S 139
S
Sbjct: 153 S 153
>gnl|CDD|31295 COG1098, VacB, Predicted RNA binding protein (contains ribosomal
protein S1 domain) [Translation, ribosomal structure and
biogenesis].
Length = 129
Score = 27.5 bits (61), Expect = 4.4
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 187 VRDFDPRISLDGGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRKLFL 246
+ + + L+GG GL H IADG + ++ +++G KV V+ I E+ K+ L
Sbjct: 16 ITPYGAFVELEGGKTGLVHISEIADGFVKDIHD----HLKVGQEVKVKVLDIDENGKISL 71
>gnl|CDD|36712 KOG1499, KOG1499, KOG1499, Protein arginine N-methyltransferase
PRMT1 and related enzymes [Posttranslational
modification, protein turnover, chaperones,
Transcription, Signal transduction mechanisms].
Length = 346
Score = 27.1 bits (60), Expect = 4.7
Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVTNGVSERFDTLQSDWFSS 160
+LD+G GTG + + K K V+ S A + A+ NG+ + ++
Sbjct: 64 VLDVGCGTGILSMFAAKAGA-RKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGK---- 117
Query: 161 VEGL------FDVIVS 170
VE + D+IVS
Sbjct: 118 VEDIELPVEKVDIIVS 133
>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate
dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an
enzyme of the zinc-dependent alcohol dehydrogenase-like
family of medium chain dehydrogenases/reductases
catalyzes the conversion of 6-hydroxyhexanoate and
NAD(+) to 6-oxohexanoate + NADH and H+.
NAD(P)(H)-dependent oxidoreductases are the major
enzymes in the interconversion of alcohols and
aldehydes, or ketones. Alcohol dehydrogenase in the
liver converts ethanol and NAD+ to acetaldehyde and
NADH, while in yeast and some other microorganisms ADH
catalyzes the conversion acetaldehyde to ethanol in
alcoholic fermentation. ADH is a member of the medium
chain alcohol dehydrogenase family (MDR), which has a
NAD(P)(H)-binding domain in a Rossmann fold of a
beta-alpha form. The NAD(H)-binding region is comprised
of 2 structurally similar halves, each of which contacts
a mononucleotide. A GxGxxG motif after the first
mononucleotide contact half allows the close contact of
the coenzyme with the ADH backbone. The N-terminal
catalytic domain has a distant homology to GroES. These
proteins typically form dimers (typically higher plants,
mammals) or tetramers (yeast, bacteria), and have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. NAD(H)-binding occurs in the
cleft between the catalytic and coenzyme-binding
domains, at the active site, and coenzyme binding
induces a conformational closing of this cleft. Coenzyme
binding typically precedes and contributes to substrate
binding. In human ADH catalysis, the zinc ion helps
coordinate the alcohol, followed by deprotonation of a
histidine, the ribose of NAD, a serine, then the
alcohol, which allows the transfer of a hydride to NAD+,
creating NADH and a zinc-bound aldehyde or ketone. In
yeast and some bacteria, the active site zinc binds an
aldehyde, polarizing it, and leading to the reverse
reaction.
Length = 350
Score = 26.8 bits (60), Expect = 6.4
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 2/86 (2%)
Query: 84 SALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPFFKGVGVDISCKALEIAKSNAVT 143
SA+ +P + VV I+ G G G + LALLK + VDI LE AK+
Sbjct: 165 SAVKKLMPLVADEPVV-IIGAG-GLGLMALALLKALGPANIIVVDIDEAKLEAAKAAGAD 222
Query: 144 NGVSERFDTLQSDWFSSVEGLFDVIV 169
V+ + G D ++
Sbjct: 223 VVVNGSDPDAAKRIIKAAGGGVDAVI 248
>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase,
Nemo-Like Kinase. Serine/Threonine Kinases (STKs),
Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain.
STKs catalyze the transfer of the gamma-phosphoryl group
from ATP to serine/threonine residues on protein
substrates. The NLK subfamily is part of a larger
superfamily that includes the catalytic domains of other
protein STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. Mitogen-activated protein
kinases (MAPKs) are important mediators of cellular
responses to extracellular signals. NLK is an atypical
MAPK that is not regulated by a MAPK kinase. It
functions downstream of the MAPK kinase kinase Tak1,
which also plays a role in activating the JNK and p38
MAPKs. The Tak1/NLK pathways are regulated by Wnts, a
family of secreted proteins that is critical in the
control of asymmetric division and cell polarity. NLK
can phosphorylate transcription factors from the TCF/LEF
family, inhibiting their ability to activate the
transcription of target genes. In prostate cancer cells,
NLK is involved in regulating androgen receptor-mediated
transcription and its expression is altered during
cancer progression.
Length = 372
Score = 26.6 bits (59), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 20 HQVIVDPDSVLDDRQRFFLTNAIVRSLKHESIHRIL 55
H++IV P + D + FL I+R LK+ IL
Sbjct: 91 HKIIVSPQPLSSDHVKVFLYQ-ILRGLKYLHSAGIL 125
>gnl|CDD|30495 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 26.3 bits (58), Expect = 7.7
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 15/97 (15%)
Query: 174 YIESVIVDCLGLEVRDFDPRIS-----------LDGGIDGLSHYRTIADGVSRHLNKDGL 222
I VI L P S ++ G ++Y TI G KDGL
Sbjct: 340 RIADVIFGALAQAAPGRVPAASQGTMNNVTFGGINQKGRGFAYYETIGGGSGAGPGKDGL 399
Query: 223 CSVEIGY-NQKVDVVRIFESRKLFLVNAF---KDYGG 255
V N + + I E R L+ AF + GG
Sbjct: 400 DGVHTHMTNTRNTPIEILERRYPVLLEAFSLREGSGG 436
>gnl|CDD|37882 KOG2671, KOG2671, KOG2671, Putative RNA methylase [Replication,
recombination and repair].
Length = 421
Score = 26.4 bits (58), Expect = 8.0
Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 101 ILDLGTGTGAVCLALLKESPFFKGVGVDISC-----KALEIAKSNAVTNGVSERF-DTLQ 154
+ D GTG++ ++ + G +D E K+N G S +F D L
Sbjct: 212 VYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLT 271
Query: 155 SD-----WFSSVEGLFDVIVSNPPY 174
+D S++ FD IV +PPY
Sbjct: 272 ADFSNPPLRSNL--KFDAIVCDPPY 294
>gnl|CDD|36585 KOG1371, KOG1371, KOG1371, UDP-glucose
4-epimerase/UDP-sulfoquinovose synthase [Cell
wall/membrane/envelope biogenesis].
Length = 343
Score = 26.4 bits (58), Expect = 8.1
Identities = 30/128 (23%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 7 SHSFLCRVTGLSSHQVI-VDPDSVLDDRQRFFLTNAIVRSLKHESIHRILGW----RDFY 61
+ ++ +VTGL VI P + + + N ++ + +I R RD+
Sbjct: 168 NKAYGWKVTGLRYFNVIGAHPSGRIGE-APLGIPNNLLPYVFQVAIGRRPNLQVVGRDYT 226
Query: 62 NVRLTLSSDTFEPRPETELLVDSALAFSLPRIEKRDVVRILDLGTGTGAVCLALLKESPF 121
+ T+ D L D +A +L ++ + +LGTG G+ L L+ + F
Sbjct: 227 TIDGTIVRDYIHVLD----LADGHVA-ALGKLRGAAEFGVYNLGTGKGSSVLELV--TAF 279
Query: 122 FKGVGVDI 129
K +GV I
Sbjct: 280 EKALGVKI 287
>gnl|CDD|30885 COG0539, RpsA, Ribosomal protein S1 [Translation, ribosomal
structure and biogenesis].
Length = 541
Score = 26.4 bits (58), Expect = 9.1
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 198 GGIDGLSHYRTIADGVSRHLNKDGLCSVEIGYNQKVDVVRIFESRK 243
GG+DGL H I+ H ++ V++G KV V+ + E R
Sbjct: 213 GGVDGLLHISEISWKRVDHPSE----VVKVGDEVKVKVISLDEERG 254
>gnl|CDD|36040 KOG0822, KOG0822, KOG0822, Protein kinase inhibitor [Cell cycle
control, cell division, chromosome partitioning].
Length = 649
Score = 26.1 bits (57), Expect = 9.5
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 12/81 (14%)
Query: 49 ESIHRILGWRDFYNVRLTLSSD--------TFEPRP----ETELLVDSALAFSLPRIEKR 96
S H++L ++D+ L SD TFE P + + + AL +P +
Sbjct: 307 NSEHQLLSYKDYLQAPLQPLSDNLENQTYETFEKDPVKYDQYQQAILKALLDRVPDESAK 366
Query: 97 DVVRILDLGTGTGAVCLALLK 117
I+ LG G G + A LK
Sbjct: 367 TTTVIMVLGAGRGPLVDASLK 387
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.324 0.141 0.418
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,272,378
Number of extensions: 173596
Number of successful extensions: 478
Number of sequences better than 10.0: 1
Number of HSP's gapped: 453
Number of HSP's successfully gapped: 74
Length of query: 264
Length of database: 6,263,737
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,275,709
Effective search space: 735421948
Effective search space used: 735421948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.2 bits)