Query gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 210
No_of_seqs 148 out of 458
Neff 5.0
Searched_HMMs 23785
Date Tue May 31 22:17:17 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780876.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jbw_A Dhpon-hydrolase, 2,6-di 84.0 1.9 7.8E-05 20.7 5.6 39 46-84 58-96 (386)
2 3fnb_A Acylaminoacyl peptidase 79.1 2.8 0.00012 19.6 5.6 38 47-84 65-102 (405)
3 3mkq_B Coatomer subunit alpha; 72.0 2.7 0.00011 19.7 3.2 37 51-87 34-70 (177)
4 2wxu_A Phospholipase C; cytoly 70.5 4.6 0.00019 18.3 5.9 43 43-85 90-132 (370)
5 1olp_A Alpha-toxin; zinc phosp 70.3 4.7 0.0002 18.2 5.2 42 45-86 92-133 (370)
6 2pmr_A Uncharacterized protein 56.9 8.3 0.00035 16.7 3.7 35 48-82 6-51 (87)
7 2qqy_A Sigma B operon; dodecam 46.6 12 0.00051 15.7 5.7 38 48-85 98-142 (149)
8 2oo2_A Hypothetical protein AF 37.3 17 0.00071 14.8 3.7 33 50-82 10-47 (86)
9 3mkq_A Coatomer beta'-subunit; 35.4 18 0.00076 14.6 3.7 35 52-86 682-716 (814)
10 2jpu_A ORF C02003 protein; sol 29.4 23 0.00096 14.0 5.4 40 49-88 5-45 (129)
11 1nnq_A Rubrerythrin; structura 28.0 24 0.001 13.9 5.4 35 51-85 85-126 (171)
12 1b8d_A Protein (rhodophytan ph 27.4 24 0.001 13.9 1.8 27 66-92 75-101 (164)
13 1ah7_A Phospholipase C; phosph 21.7 32 0.0013 13.1 5.9 42 43-84 82-123 (245)
No 1
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41
Probab=83.97 E-value=1.9 Score=20.69 Aligned_cols=39 Identities=18% Similarity=0.140 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999862687367888889999999999
Q gi|254780876|r 46 TAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIV 84 (210)
Q Consensus 46 ~~~~~~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~ 84 (210)
.-..+.++|.++|.+|...|+.+.|-.+|-.|-.|+|+-
T Consensus 58 ~w~~~a~~~~~~a~~~~~~g~~~sA~~~~~~Aa~~y~~a 96 (386)
T 2jbw_A 58 YWMSLANEYEQEAERKVALGHDLSAGELLMSAALCAQYA 96 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999999998799889999999999999960
No 2
>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics, PSI-2, protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans UA159}
Probab=79.15 E-value=2.8 Score=19.63 Aligned_cols=38 Identities=11% Similarity=-0.095 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999862687367888889999999999
Q gi|254780876|r 47 AQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIV 84 (210)
Q Consensus 47 ~~~~~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~ 84 (210)
=..+.+++..+|..|...|+++.|-.+|..|--|+|+-
T Consensus 65 w~~~a~~~~~~a~~~~~~g~~~~a~~~~~~A~~yy~~a 102 (405)
T 3fnb_A 65 FNEHADYLEDEVERVKKVGYRDLISHLYFSACFSIRAA 102 (405)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999997899888999999999999998
No 3
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.00 E-value=2.7 Score=19.67 Aligned_cols=37 Identities=16% Similarity=0.317 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999862687367888889999999999999
Q gi|254780876|r 51 AERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMA 87 (210)
Q Consensus 51 ~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~~~~ 87 (210)
..+|..||.-|+..|+--+||.+|++...|-.++.-.
T Consensus 34 ~~~W~~La~~Al~~g~~~~Ae~~y~~~~d~~~l~~Ly 70 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLY 70 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999998799999999999862389999999
No 4
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, metal-binding, Ca and membrane binding, gangrene determinant, zinc, toxin, calcium; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A
Probab=70.54 E-value=4.6 Score=18.27 Aligned_cols=43 Identities=28% Similarity=0.352 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 7889999999999999998626873678888899999999999
Q gi|254780876|r 43 VRGTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVS 85 (210)
Q Consensus 43 ~~~~~~~~~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~~ 85 (210)
+..+|...+.||-.||....-.|+.-.|=.||-.|-||+-=|+
T Consensus 90 ~~~~A~~~~~ky~~~A~~~~~~g~~~~A~f~LG~a~Hy~~D~~ 132 (370)
T 2wxu_A 90 IPDTGESQIRKFSALARYEWQRGNYKQATFYLGEAMHYFGDID 132 (370)
T ss_dssp BCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 6731889999999999999975699999999999988863068
No 5
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3
Probab=70.28 E-value=4.7 Score=18.24 Aligned_cols=42 Identities=21% Similarity=0.344 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899999999999999986268736788888999999999999
Q gi|254780876|r 45 GTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSM 86 (210)
Q Consensus 45 ~~~~~~~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~~~ 86 (210)
-+|.....||-.||....-.|+.-.|-.||-.|-||+-=|..
T Consensus 92 ~~A~~~~~ky~~~A~~~~~~g~~~~A~f~LG~a~Hy~~D~~~ 133 (370)
T 1olp_A 92 DNAESQTRKFATLAKNEWDKGNYEKAAWYLGQGMHYFGDLNT 133 (370)
T ss_dssp CCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 768899999999999999858999999999888788742798
No 6
>2pmr_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein structure initiative; 1.32A {Methanothermobacterthermautotrophicus str} SCOP: a.8.11.1
Probab=56.94 E-value=8.3 Score=16.71 Aligned_cols=35 Identities=14% Similarity=-0.029 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHCCCH-----------HHHHHHHHHHHHHHH
Q ss_conf 99999999999998626873-----------678888899999999
Q gi|254780876|r 48 QHIAERYSVLARDAMSAGDY-----------VVAENHLQHAEHYNR 82 (210)
Q Consensus 48 ~~~~~ky~~la~da~~~gd~-----------~~~e~~~qha~hy~r 82 (210)
..-++||..+-++|+..-.. -+++.|+.-|.||+.
T Consensus 6 ~ErvekYi~~~eeAl~~~~~~~~~~~~~~~l~mA~~Y~~Da~~fl~ 51 (87)
T 2pmr_A 6 RERIEKDLELLEKNLMEMKSIKLSDDEEAVVERALNYRDDSVYYLE 51 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999721456775199999999999999999998
No 7
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=46.58 E-value=12 Score=15.70 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHH-------HHHHHHHHHHHH
Q ss_conf 99999999999998626873678888-------899999999999
Q gi|254780876|r 48 QHIAERYSVLARDAMSAGDYVVAENH-------LQHAEHYNRIVS 85 (210)
Q Consensus 48 ~~~~~ky~~la~da~~~gd~~~~e~~-------~qha~hy~r~~~ 85 (210)
..+++.|..|+.-|...||..++..+ ..|++.+.++|.
T Consensus 98 ~~~~~~y~~~~~~a~~~~D~~~~~~l~~~~~eE~~H~~~l~~~L~ 142 (149)
T 2qqy_A 98 YETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLN 142 (149)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999999999999998869899999999999999999999999856
No 8
>2oo2_A Hypothetical protein AF_1782; structural genomics, unknown function, PSI-2, protein structure initiative; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: a.8.11.1
Probab=37.29 E-value=17 Score=14.82 Aligned_cols=33 Identities=3% Similarity=-0.052 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHCCCH-----HHHHHHHHHHHHHHH
Q ss_conf 999999999998626873-----678888899999999
Q gi|254780876|r 50 IAERYSVLARDAMSAGDY-----VVAENHLQHAEHYNR 82 (210)
Q Consensus 50 ~~~ky~~la~da~~~gd~-----~~~e~~~qha~hy~r 82 (210)
-++||..+.++|+..-.. -+++.|+.-|.||+.
T Consensus 10 r~eKYi~~~eeal~~~~~~~~~l~ma~~Y~~Da~~fl~ 47 (86)
T 2oo2_A 10 ETLKWLERIEERVKEIEGDEGFMRNIEAYISDSRYFLE 47 (86)
T ss_dssp HHHHHHHHHHHHGGGEEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998724589999999999999999988
No 9
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae YJM789}
Probab=35.44 E-value=18 Score=14.64 Aligned_cols=35 Identities=9% Similarity=0.238 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999986268736788888999999999999
Q gi|254780876|r 52 ERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSM 86 (210)
Q Consensus 52 ~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~~~ 86 (210)
.++..||..|+..|+--+||-.|+++..|-.++--
T Consensus 682 ~~W~~La~~al~~~~~~~A~~~y~~~~d~~~l~~l 716 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLL 716 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHH
T ss_conf 99999999999819989999999984476677999
No 10
>2jpu_A ORF C02003 protein; solution structure, SSR10, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} PDB: 2q00_A
Probab=29.37 E-value=23 Score=14.02 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHCCCHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999862687367-8888899999999999998
Q gi|254780876|r 49 HIAERYSVLARDAMSAGDYVV-AENHLQHAEHYNRIVSMAQ 88 (210)
Q Consensus 49 ~~~~ky~~la~da~~~gd~~~-~e~~~qha~hy~r~~~~~~ 88 (210)
...|||+..|.+-+.-||.|. +|-|+--|+-....|++.-
T Consensus 5 t~Ae~yl~EA~e~L~kGD~vQASEK~ykAaee~iKAlA~~~ 45 (129)
T 2jpu_A 5 TSAEVYYEEAEEFLSKGDLVQACEKYYKAAEEAIKLLVIEN 45 (129)
T ss_dssp CHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 79999999999998657887888999999999999999882
No 11
>1nnq_A Rubrerythrin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.35A {Pyrococcus furiosus} SCOP: a.25.1.1 g.41.5.1 PDB: 2hr5_A
Probab=27.98 E-value=24 Score=13.87 Aligned_cols=35 Identities=26% Similarity=0.324 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHH-------HHHHHHHHHHH
Q ss_conf 999999999986268736788888-------99999999999
Q gi|254780876|r 51 AERYSVLARDAMSAGDYVVAENHL-------QHAEHYNRIVS 85 (210)
Q Consensus 51 ~~ky~~la~da~~~gd~~~~e~~~-------qha~hy~r~~~ 85 (210)
.+.|..+|+.|..-||...+..|- .|++.|.++|.
T Consensus 85 ~~~Yp~~a~~A~eeG~~~~a~~f~~i~~~E~~H~~~~~~~l~ 126 (171)
T 1nnq_A 85 EEMYPVYNKAAEFQGEKEAVRTTHYALEAEKIHAELYRKAKE 126 (171)
T ss_dssp HTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 988999999999868799999999999999999999999998
No 12
>1b8d_A Protein (rhodophytan phycoerythrin (alpha chain) ); light-harvesting complex, RED algae, phycobiliprotein, photosynthesis; HET: MEN PEB PUB; 1.90A {Griffithsia monilis} SCOP: a.1.1.3 PDB: 1eyx_A* 1lia_A* 2vjh_A* 2g9m_A* 3mwn_A*
Probab=27.43 E-value=24 Score=13.90 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=17.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 736788888999999999999987754
Q gi|254780876|r 66 DYVVAENHLQHAEHYNRIVSMAQAQIQ 92 (210)
Q Consensus 66 d~~~~e~~~qha~hy~r~~~~~~~~~~ 92 (210)
...-.+-.+---+||+|++.-+-..-.
T Consensus 75 ~~~r~~~C~RD~~~~LR~itYal~aGd 101 (164)
T 1b8d_A 75 SPEKINKCYRDIDHYMRLINYSLVVGG 101 (164)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 477899859999999999999998089
No 13
>1ah7_A Phospholipase C; phospholipid hydrolysis, hydrolase; 1.50A {Bacillus cereus} SCOP: a.124.1.1 PDB: 2ffz_A 1p5x_A 1p6d_A* 1p6e_A* 2fgn_A 2huc_A
Probab=21.74 E-value=32 Score=13.15 Aligned_cols=42 Identities=24% Similarity=0.158 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 788999999999999999862687367888889999999999
Q gi|254780876|r 43 VRGTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIV 84 (210)
Q Consensus 43 ~~~~~~~~~~ky~~la~da~~~gd~~~~e~~~qha~hy~r~~ 84 (210)
...++...+.+|..+|..+..+|+.-.+-.||-++-||+-=|
T Consensus 82 ~~~~a~~~~~~~~~~a~~~~~~~~~~~a~~~L~~~~H~vgDi 123 (245)
T 1ah7_A 82 FAKQAKETGAKYFKLAGESYKNKDMKQAFFYLGLSLHYLGDV 123 (245)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 898726799999999999988289999999999999998127
Done!