RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
(210 letters)
>gnl|CDD|151399 pfam10952, DUF2753, Protein of unknown function (DUF2753). This
bacterial family of proteins has no known function.
Length = 140
Score = 28.9 bits (65), Expect = 1.1
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 8/53 (15%)
Query: 52 ERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLL 104
ER+++LA +A+ GD + + H Q A +A++Q ++ DE +DLL
Sbjct: 2 ERHTLLADEALKNGDPLRSILHYQQA--------LAESQELDESNEDELEDLL 46
>gnl|CDD|180049 PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase;
Provisional.
Length = 327
Score = 28.1 bits (64), Expect = 1.6
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 34 YDSNGYDVKVRGTAQHIAERYSVLARDAMSAGDYVVA 70
Y YD+ G A + E+ ++ + GD ++
Sbjct: 143 YHEGDYDLA--GFAVGVVEKDKIIDGSKVKEGDVLIG 177
>gnl|CDD|183314 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 27.5 bits (62), Expect = 2.7
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 5/65 (7%)
Query: 41 VKVRGTAQH--IAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI---VSMAQAQIQEKL 95
K+ G + IA Y LA+ A++ GD A L+ A + S+ +
Sbjct: 168 EKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQ 227
Query: 96 QRDEQ 100
Sbjct: 228 GDYAA 232
>gnl|CDD|182123 PRK09866, PRK09866, hypothetical protein; Provisional.
Length = 741
Score = 27.1 bits (60), Expect = 3.6
Identities = 5/34 (14%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 85 SMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSE 118
+ ++Q +L+ + L +++Q E + +
Sbjct: 681 ASCLTELQTRLR----ESLALRQQNESVVRLMQQ 710
>gnl|CDD|117002 pfam08423, Rad51, Rad51. Rad51 is a DNA repair and recombination
protein and is a homologue of the bacterial ATPase RecA
protein.
Length = 261
Score = 26.9 bits (60), Expect = 4.4
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 50 IAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEK 94
IAER+ + + + Y A N EH +++ A A + E
Sbjct: 97 IAERFGLDPEEVLDNIAYARAYNT----EHQMQLLLQAAAMMSES 137
>gnl|CDD|181920 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 26.7 bits (59), Expect = 4.4
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 88 QAQIQEKLQRDEQDDLLVKEQKERAQNA 115
QA QE+L++ E++ L +EQK++A+ A
Sbjct: 96 QAAEQERLKQLEKERLAAQEQKKQAEEA 123
>gnl|CDD|152557 pfam12122, DUF3582, Protein of unknown function (DUF3582). This
domain is found in bacteria, and is approximately 130
amino acids in length. It is found associated with
pfam01694. There is a conserved ASW sequence motif. This
domain has a single completely conserved residue F that
may be functionally important.
Length = 126
Score = 26.5 bits (59), Expect = 5.1
Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
Query: 86 MAQAQIQEKLQRDEQD--DLLV--KEQKERAQNALSEFEASP 123
+A I +L + Q L + +EQ +A+ L+EF +P
Sbjct: 20 LATQGIDLELMPERQGQVALWLADEEQLAQAEAELAEFLQNP 61
>gnl|CDD|162374 TIGR01464, hemE, uroporphyrinogen decarboxylase. This model
represents uroporphyrinogen decarboxylase (HemE), which
converts uroporphyrinogen III to coproporphyrinogen III.
This step takes the pathway toward protoporphyrin IX, a
common precursor of both heme and chlorophyll, rather
than toward precorrin 2 and its products.
Length = 338
Score = 26.5 bits (59), Expect = 5.3
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 7/46 (15%)
Query: 127 IEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSY-----KKVRRR 167
EGK P+ I+ EDV E ++ Y K +R
Sbjct: 84 FVEGKGPVIPEPIRTP-EDVERLKEFDP-ESELPYVYEAIKLLREE 127
>gnl|CDD|183073 PRK11281, PRK11281, hypothetical protein; Provisional.
Length = 1113
Score = 26.4 bits (59), Expect = 6.2
Identities = 9/34 (26%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 86 MAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEF 119
+ +AQ Q++ R + + L+ +E + Q LS+
Sbjct: 262 VQEAQSQDEAARIQANPLVAQELEINLQ--LSQR 293
>gnl|CDD|183823 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 25.8 bits (57), Expect = 7.7
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 83 IVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEASPCPLIEEGKEPIFENSIQPK 142
I +I+E + D + QKE Q++ AS + + P+ +
Sbjct: 1019 IPVQEAPEIREAAPE-RRLDPKYRTQKEEIQDSDQRAAASRDTGAQVKETPVRVEKKIGR 1077
Query: 143 VEDVAFKTPDISREKDVSYKKVR 165
+ V + D K +K
Sbjct: 1078 NDPVPCQNVDGGSGKKYKFKHAE 1100
>gnl|CDD|178875 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated.
Length = 346
Score = 25.9 bits (58), Expect = 8.3
Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 127 IEEGKEPIFENSIQPKVEDV-AFKTPDISREKDVSY--KKVRR-RRPLRPRV 174
EEG+ P+F+N I+ DV PD E+D+ Y + VR RR L V
Sbjct: 90 FEEGEGPVFDNPIR-TEADVEKLPVPDP--EEDLPYVLEAVRLLRRELGGEV 138
>gnl|CDD|173148 PRK14685, PRK14685, hypothetical protein; Provisional.
Length = 177
Score = 25.5 bits (55), Expect = 9.3
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 162 KKVRRRRPLRPRVFPNAKSGNQPVE 186
+++ RR P PR P A+ G P +
Sbjct: 18 RRLHRRPPASPRARPGARDGGSPTQ 42
>gnl|CDD|179525 PRK03003, PRK03003, GTP-binding protein Der; Reviewed.
Length = 472
Score = 25.7 bits (57), Expect = 9.3
Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 35 DSNGYDVKVRGTAQHIAERYSVLARDAMSAGDYVV 69
D+ G++ +G +AE+ A AM D V+
Sbjct: 92 DTGGWEPDAKGLQASVAEQ----AEVAMRTADAVL 122
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.312 0.128 0.356
Gapped
Lambda K H
0.267 0.0715 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 3,339,072
Number of extensions: 207676
Number of successful extensions: 381
Number of sequences better than 10.0: 1
Number of HSP's gapped: 380
Number of HSP's successfully gapped: 35
Length of query: 210
Length of database: 5,994,473
Length adjustment: 89
Effective length of query: 121
Effective length of database: 4,071,361
Effective search space: 492634681
Effective search space used: 492634681
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.0 bits)