RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62] (210 letters) >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 36.4 bits (83), Expect = 0.005 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 9/63 (14%) Query: 92 QEKLQR-DEQDDLLVKEQKERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVEDVAF-K 149 +++LQ D ++ +E +E+A+ L E+ + E + +N I ++ D AF + Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWN-------QRQSEQVEKNKINNRIADKAFYQ 147 Query: 150 TPD 152 PD Sbjct: 148 QPD 150 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 30.7 bits (69), Expect = 0.26 Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 50/121 (41%) Query: 17 GGNGSFNR--KNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARDAMSAGDY------V 68 GG G+ + + L L Y + Y V V + AE S L R + A + Sbjct: 161 GGQGNTDDYFEELRDL---YQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215 Query: 69 VAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEASP--CPL 126 + L++ ++D LL + P CPL Sbjct: 216 LE--WLENPS-----------------NTPDKDYLL----------------SIPISCPL 240 Query: 127 I 127 I Sbjct: 241 I 241 >1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A Length = 70 Score = 29.2 bits (66), Expect = 0.79 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Query: 66 DYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSE 118 D A + E ++ + +A ++E L+ + D+ V+ +ERA+NAL+ Sbjct: 15 DEDFA--TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 65 >2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase; alpha/beta hydrolase, META-cleavage pathway; 2.1A {Arthrobacter nicotinovorans} SCOP: c.69.1.41 Length = 386 Score = 27.9 bits (61), Expect = 1.8 Identities = 7/35 (20%), Positives = 12/35 (34%) Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83 +A Y A ++ G + A L A + Sbjct: 61 SLANEYEQEAERKVALGHDLSAGELLMSAALCAQY 95 >3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix bundle, structural genomics, PSI-2, protein structure initiative; HET: PGE; 2.12A {Streptococcus mutans UA159} Length = 405 Score = 27.5 bits (60), Expect = 2.1 Identities = 4/35 (11%), Positives = 7/35 (20%) Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83 A+ G + + A R Sbjct: 67 EHADYLEDEVERVKKVGYRDLISHLYFSACFSIRA 101 >2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl radical, hyperthermophilic, unknown function; HET: PGE; 2.90A {Archaeoglobus fulgidus} Length = 776 Score = 27.5 bits (61), Expect = 2.4 Identities = 12/50 (24%), Positives = 20/50 (40%) Query: 47 AQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQ 96 + RYS LA + + D E L+ AE ++ + E +Q Sbjct: 206 VINYGLRYSKLAEELAESEDGERREELLKIAEICRKVPAEKPETFWEAVQ 255 >2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: d.14.1.4 d.101.1.1 Length = 358 Score = 26.6 bits (58), Expect = 4.4 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%) Query: 76 HAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEAS 122 + R +A ++ E + L +QK R + F S Sbjct: 260 LKDQVLRCSKIAGVKVAE--ITELILKALENDQKVRKEGGKFGFAES 304 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.5 bits (57), Expect = 4.6 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%) Query: 110 ERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVE 144 E+ Q AL + +AS L + P +I+ +E Sbjct: 18 EK-Q-ALKKLQAS-LKLYADDSAPAL--AIKATME 47 >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 Length = 287 Score = 25.7 bits (56), Expect = 7.2 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 7/51 (13%) Query: 30 LVRNYDSNGYDVKVRGTA-------QHIAERYSVLARDAMSAGDYVVAENH 73 + GY+ K+ A ERY + D + H Sbjct: 128 TATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAH 178 >1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli K12} SCOP: b.43.2.1 c.85.1.1 Length = 591 Score = 25.7 bits (56), Expect = 8.4 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%) Query: 35 DSNGYDVKVRGTAQHIAE-----RYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQA 89 D N + R Q A ++ RD M + ++ + YN I + Q Sbjct: 243 DENNKQYQ-RNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQG 301 Query: 90 QIQ 92 Q Sbjct: 302 QRH 304 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.312 0.128 0.356 Gapped Lambda K H 0.267 0.0427 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,665,732 Number of extensions: 73887 Number of successful extensions: 188 Number of sequences better than 10.0: 1 Number of HSP's gapped: 186 Number of HSP's successfully gapped: 20 Length of query: 210 Length of database: 5,693,230 Length adjustment: 88 Effective length of query: 122 Effective length of database: 3,559,758 Effective search space: 434290476 Effective search space used: 434290476 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 54 (25.3 bits)