RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)



>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 36.4 bits (83), Expect = 0.005
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 92  QEKLQR-DEQDDLLVKEQKERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVEDVAF-K 149
           +++LQ  D    ++ +E +E+A+  L E+        +   E + +N I  ++ D AF +
Sbjct: 95  RKRLQELDAASKVMEQEWREKAKKDLEEWN-------QRQSEQVEKNKINNRIADKAFYQ 147

Query: 150 TPD 152
            PD
Sbjct: 148 QPD 150


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.7 bits (69), Expect = 0.26
 Identities = 24/121 (19%), Positives = 37/121 (30%), Gaps = 50/121 (41%)

Query: 17  GGNGSFNR--KNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARDAMSAGDY------V 68
           GG G+ +   + L  L   Y +  Y V V    +  AE  S L R  + A         +
Sbjct: 161 GGQGNTDDYFEELRDL---YQT--YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI 215

Query: 69  VAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEASP--CPL 126
           +    L++                      ++D LL                + P  CPL
Sbjct: 216 LE--WLENPS-----------------NTPDKDYLL----------------SIPISCPL 240

Query: 127 I 127
           I
Sbjct: 241 I 241


>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage
           lambda protein N, regulation of RNA binding,
           transcription antitermination, X-RAY crystallography;
           1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
          Length = 70

 Score = 29.2 bits (66), Expect = 0.79
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 66  DYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSE 118
           D   A   +   E ++ +  +A   ++E L+ +  D+  V+  +ERA+NAL+ 
Sbjct: 15  DEDFA--TVLVEEGFSTLEELAYVPMKELLEIEGLDEPTVEALRERAKNALAT 65


>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
          alpha/beta hydrolase, META-cleavage pathway; 2.1A
          {Arthrobacter nicotinovorans} SCOP: c.69.1.41
          Length = 386

 Score = 27.9 bits (61), Expect = 1.8
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 49 HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
           +A  Y   A   ++ G  + A   L  A    + 
Sbjct: 61 SLANEYEQEAERKVALGHDLSAGELLMSAALCAQY 95


>3fnb_A Acylaminoacyl peptidase SMU_737; alpha-beta-alpha sandwich, helix
           bundle, structural genomics, PSI-2, protein structure
           initiative; HET: PGE; 2.12A {Streptococcus mutans UA159}
          Length = 405

 Score = 27.5 bits (60), Expect = 2.1
 Identities = 4/35 (11%), Positives = 7/35 (20%)

Query: 49  HIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRI 83
             A+            G   +  +    A    R 
Sbjct: 67  EHADYLEDEVERVKKVGYRDLISHLYFSACFSIRA 101


>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl
           radical, hyperthermophilic, unknown function; HET: PGE;
           2.90A {Archaeoglobus fulgidus}
          Length = 776

 Score = 27.5 bits (61), Expect = 2.4
 Identities = 12/50 (24%), Positives = 20/50 (40%)

Query: 47  AQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQ 96
             +   RYS LA +   + D    E  L+ AE   ++ +       E +Q
Sbjct: 206 VINYGLRYSKLAEELAESEDGERREELLKIAEICRKVPAEKPETFWEAVQ 255


>2nn6_A Polymyositis/scleroderma autoantigen 1; RNA, exosome, PM/SCL,
           phosphorolytic, hydrolase/transferase complex; 3.35A
           {Homo sapiens} SCOP: d.14.1.4 d.101.1.1
          Length = 358

 Score = 26.6 bits (58), Expect = 4.4
 Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 76  HAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFEAS 122
             +   R   +A  ++ E    +     L  +QK R +     F  S
Sbjct: 260 LKDQVLRCSKIAGVKVAE--ITELILKALENDQKVRKEGGKFGFAES 304


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 26.5 bits (57), Expect = 4.6
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 5/35 (14%)

Query: 110 ERAQNALSEFEASPCPLIEEGKEPIFENSIQPKVE 144
           E+ Q AL + +AS   L  +   P    +I+  +E
Sbjct: 18  EK-Q-ALKKLQAS-LKLYADDSAPAL--AIKATME 47


>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
           {Streptococcus pyogenes} SCOP: c.37.1.21
          Length = 287

 Score = 25.7 bits (56), Expect = 7.2
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 7/51 (13%)

Query: 30  LVRNYDSNGYDVKVRGTA-------QHIAERYSVLARDAMSAGDYVVAENH 73
                 + GY+ K+   A           ERY  +  D          + H
Sbjct: 128 TATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAH 178


>1fui_A L-fucose isomerase; ketol isomerase, fucose metabolism, L-fucose to
           L-fuculose conversion; HET: FOC; 2.50A {Escherichia coli
           K12} SCOP: b.43.2.1 c.85.1.1
          Length = 591

 Score = 25.7 bits (56), Expect = 8.4
 Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 35  DSNGYDVKVRGTAQHIAE-----RYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQA 89
           D N    + R   Q  A        ++  RD M     +     ++ +  YN I +  Q 
Sbjct: 243 DENNKQYQ-RNAEQSRAVLRESLLMAMCIRDMMQGNSKLADIGRVEESLGYNAIAAGFQG 301

Query: 90  QIQ 92
           Q  
Sbjct: 302 QRH 304


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.312    0.128    0.356 

Gapped
Lambda     K      H
   0.267   0.0427    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,665,732
Number of extensions: 73887
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 20
Length of query: 210
Length of database: 5,693,230
Length adjustment: 88
Effective length of query: 122
Effective length of database: 3,559,758
Effective search space: 434290476
Effective search space used: 434290476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.3 bits)