BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62] (210 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62] Length = 210 Score = 432 bits (1112), Expect = e-123, Method: Compositional matrix adjust. Identities = 210/210 (100%), Positives = 210/210 (100%) Query: 1 MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD 60 MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD Sbjct: 1 MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD 60 Query: 61 AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE 120 AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE Sbjct: 61 AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE 120 Query: 121 ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS 180 ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS Sbjct: 121 ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS 180 Query: 181 GNQPVEATETIVPQELNSDNASSVDQDCKV 210 GNQPVEATETIVPQELNSDNASSVDQDCKV Sbjct: 181 GNQPVEATETIVPQELNSDNASSVDQDCKV 210 >gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str. psy62] Length = 173 Score = 27.3 bits (59), Expect = 0.18, Method: Compositional matrix adjust. Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 18/106 (16%) Query: 109 KERAQNALSEFEASPCPLIEEGKEPIFENSIQPKV---------EDV-AFKTPDISREKD 158 +E+++N L +++ + EE +E I + K+ E + A D+ E+ Sbjct: 51 REKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDL--EQK 108 Query: 159 VSYKKVRRRRPLRPRVFPNAKSGNQPVEATETIVPQELNSDNASSV 204 + Y K+ +R L AK + VE I+ Q++N D SS+ Sbjct: 109 IHYMKLEAKRLLY------AKIADFSVEIVREIISQKMNDDVNSSI 148 >gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62] Length = 329 Score = 23.1 bits (48), Expect = 4.0, Method: Compositional matrix adjust. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 45 GTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLL 104 G AQH AE S + A S V+ + L+ ++VS L+ + L+ Sbjct: 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM 205 Query: 105 VK 106 V+ Sbjct: 206 VR 207 >gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus str. psy62] Length = 700 Score = 22.7 bits (47), Expect = 4.5, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%) Query: 105 VKEQKERAQNALSEFEAS--PCPLIEEGKEPIFENSIQ 140 + E ER + LSE + + CP IEE KE F + ++ Sbjct: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505 >gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter asiaticus str. psy62] Length = 1187 Score = 22.7 bits (47), Expect = 5.2, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 16/31 (51%) Query: 25 KNLNPLVRNYDSNGYDVKVRGTAQHIAERYS 55 ++LN L + YD+ +RGT + E S Sbjct: 959 QSLNTLGAGFQLASYDLDIRGTGNLLGEEQS 989 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.312 0.128 0.356 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 128,110 Number of Sequences: 1233 Number of extensions: 5116 Number of successful extensions: 9 Number of sequences better than 100.0: 6 Number of HSP's better than 100.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 5 Number of HSP's gapped (non-prelim): 6 length of query: 210 length of database: 328,796 effective HSP length: 70 effective length of query: 140 effective length of database: 242,486 effective search space: 33948040 effective search space used: 33948040 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 36 (18.5 bits)