BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780876|ref|YP_003065289.1| hypothetical protein
CLIBASIA_03865 [Candidatus Liberibacter asiaticus str. psy62]
         (210 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780876|ref|YP_003065289.1| hypothetical protein CLIBASIA_03865 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 210

 Score =  432 bits (1112), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/210 (100%), Positives = 210/210 (100%)

Query: 1   MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD 60
           MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD
Sbjct: 1   MRSVQQYKRSRGRGSNGGNGSFNRKNLNPLVRNYDSNGYDVKVRGTAQHIAERYSVLARD 60

Query: 61  AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE 120
           AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE
Sbjct: 61  AMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLLVKEQKERAQNALSEFE 120

Query: 121 ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS 180
           ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS
Sbjct: 121 ASPCPLIEEGKEPIFENSIQPKVEDVAFKTPDISREKDVSYKKVRRRRPLRPRVFPNAKS 180

Query: 181 GNQPVEATETIVPQELNSDNASSVDQDCKV 210
           GNQPVEATETIVPQELNSDNASSVDQDCKV
Sbjct: 181 GNQPVEATETIVPQELNSDNASSVDQDCKV 210


>gi|254781085|ref|YP_003065498.1| F0F1 ATP synthase subunit B [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 173

 Score = 27.3 bits (59), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 18/106 (16%)

Query: 109 KERAQNALSEFEASPCPLIEEGKEPIFENSIQPKV---------EDV-AFKTPDISREKD 158
           +E+++N L +++     + EE +E I     + K+         E + A    D+  E+ 
Sbjct: 51  REKSENILMQYKEKHSKVEEETREIILAAKHRAKILAEEGCQNIEQISALYLKDL--EQK 108

Query: 159 VSYKKVRRRRPLRPRVFPNAKSGNQPVEATETIVPQELNSDNASSV 204
           + Y K+  +R L       AK  +  VE    I+ Q++N D  SS+
Sbjct: 109 IHYMKLEAKRLLY------AKIADFSVEIVREIISQKMNDDVNSSI 148


>gi|254780676|ref|YP_003065089.1| lipoyl synthase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 329

 Score = 23.1 bits (48), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 45  GTAQHIAERYSVLARDAMSAGDYVVAENHLQHAEHYNRIVSMAQAQIQEKLQRDEQDDLL 104
           G AQH AE  S +   A S    V+  + L+      ++VS         L+    + L+
Sbjct: 146 GGAQHFAEVISAIRESAPSTTIEVLTPDFLRKPHALEKVVSAKPDVFNHNLETVASNYLM 205

Query: 105 VK 106
           V+
Sbjct: 206 VR 207


>gi|254780945|ref|YP_003065358.1| ATP-dependent DNA helicase RecG [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 700

 Score = 22.7 bits (47), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 105 VKEQKERAQNALSEFEAS--PCPLIEEGKEPIFENSIQ 140
           + E  ER +  LSE + +   CP IEE KE  F + ++
Sbjct: 468 IDEVIERLKVVLSEGKKAYWICPQIEEKKESNFRSVVE 505


>gi|254780947|ref|YP_003065360.1| transcription-repair coupling factor [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 1187

 Score = 22.7 bits (47), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 16/31 (51%)

Query: 25  KNLNPLVRNYDSNGYDVKVRGTAQHIAERYS 55
           ++LN L   +    YD+ +RGT   + E  S
Sbjct: 959 QSLNTLGAGFQLASYDLDIRGTGNLLGEEQS 989


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.312    0.128    0.356 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,110
Number of Sequences: 1233
Number of extensions: 5116
Number of successful extensions: 9
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 6
length of query: 210
length of database: 328,796
effective HSP length: 70
effective length of query: 140
effective length of database: 242,486
effective search space: 33948040
effective search space used: 33948040
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 36 (18.5 bits)