HHsearch alignment for GI: 254780877 and conserved domain: CHL00176

Probab=99.05  E-value=2.5e-09  Score=94.83  Aligned_cols=163  Identities=26%  Similarity=0.447  Sum_probs=108.1

Q ss_pred             HHHHCCHHHHHHHHHHHHHHHHCCCCCCCC--------CCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHC
Q ss_conf             767459489999999999874101236566--------512898726786168899999998723776530022447740
Q gi|254780877|r  567 SKSVIGQSAAVESVSNALRRFRAGLQDPQR--------PMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYM  638 (853)
Q Consensus       567 ~~~v~gq~~ai~~v~~~~~~~~~gl~~~~~--------p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~  638 (853)
T Consensus       176 F~DVaG~~eaK~el~Eivdf----Lk~P~k~~~~Gak~PkG-vLL~GpPGTGKTlLAkAvAgEa---~vpF~~~sgs~F~  247 (631)
T CHL00176        176 FNDVAGVEEAKEELEEVVTF----LKKPERFTAVGAKIPKG-VLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFV  247 (631)
T ss_pred             CCCCCCCHHHHHHHHHHHHH----HCCHHHHHHCCCCCCCE-EEEECCCCCCHHHHHHHHHCCC---CCCEEEEEHHHHH
T ss_conf             53228858999999999998----35958876449968965-8988989987889999985655---8846998837855


Q ss_pred             CCCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCEEEEHHHHHC-----------CHH---HHHHHHHHHHCCEEECC
Q ss_conf             345320130477112035667--74211322156410220214414-----------989---99999998404578879
Q gi|254780877|r  639 EKHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQVVLFDEIEKA-----------HSD---VHNILLQVLDDGRLTDS  702 (853)
Q Consensus       639 e~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sVil~DEiEKa-----------h~~---v~~~llqild~G~ltd~  702 (853)
T Consensus       248 e~------------~vGvga~rVR~LF~~Ar~~aP~IiFIDEiDaig~~Rg~~~~gg~~e~e~tlnqLL~emD-Gf-~~~  313 (631)
T CHL00176        248 EM------------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGVGGGNDEREQTLNQLLTEMD-GF-EGN  313 (631)
T ss_pred             HH------------HCCHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHC-CC-CCC
T ss_conf             64------------21555899999999998639969998710120114789888985089999999999842-88-878


Q ss_pred             CCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHCCCCCEEECCCCCHHHHHHHHHHHHHH
Q ss_conf             99778303315595485126876403267999999999862885772666815862889989999999999999
Q gi|254780877|r  703 QGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRSAFKPEFLNRLDEIILFEKLRKEDMAKIVRIQLGR  776 (853)
Q Consensus       703 ~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~~f~peflnRid~iv~F~~l~~~~~~~i~~~~l~~  776 (853)
T Consensus       314 -------~gViViaATNr--------pd~LDpAL-------lRP---GRFDR~I~V~lPD~~gR~~IL~vh~k~  362 (631)
T CHL00176        314 -------KGVIVIAATNR--------IDILDAAL-------LRP---GRFDRQVTVSLPDFEGRLDILKVHARN  362 (631)
T ss_pred             -------CCEEEEEECCC--------CCCCCHHH-------CCC---CCCCEEEEECCCCHHHHHHHHHHHHHC
T ss_conf             -------88699982588--------55456866-------268---877549982698989999999999707