HHsearch alignment for GI: 254780877 and conserved domain: CHL00195

Probab=99.63  E-value=7.3e-13  Score=123.52  Aligned_cols=139  Identities=27%  Similarity=0.432  Sum_probs=103.8

Q ss_pred             HCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCCC---CCCH
Q ss_conf             1012365665128987267861688999999987237765300224477403453201304771120356677---4211
Q gi|254780877|r  588 RAGLQDPQRPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEGG---ALTE  664 (853)
Q Consensus       588 ~~gl~~~~~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~gg---~Lte  664 (853)
T Consensus       253 ~~gl~~---PkGv-LL~GpPG~GKtl~AKAvA~e~---~~p~l~l~~~~l~~------------~~vGesE~~~r~~f~~  313 (491)
T CHL00195        253 NYGLPT---PRGL-LLVGIQGTGKSLTAKAIANEW---NLPLLRLDVGKLFG------------GIVGESESRMRQMIQL  313 (491)
T ss_pred             HCCCCC---CCEE-EEECCCCCCHHHHHHHHHHHH---CCCEEEEEHHHHHH------------HHCCHHHHHHHHHHHH
T ss_conf             459999---9879-997999987899999998663---89469966799756------------0067049999999999


Q ss_pred             HHHCCCCCEEEEHHHHHC------------CHHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHH
Q ss_conf             322156410220214414------------98999999998404578879997783033155954851268764032679
Q gi|254780877|r  665 AVRRHPYQVVLFDEIEKA------------HSDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSV  732 (853)
Q Consensus       665 ~vr~~P~sVil~DEiEKa------------h~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~  732 (853)
T Consensus       314 A~~~aP-~ilfiDEidk~~~~~~~~~d~g~s~rv~~~~Lt~m~e~-----------~~~VfViattN~--------~---  370 (491)
T CHL00195        314 AETISP-CILWIDEIDKAFSGLDSKGDSGTSNRVLATFITWLSEK-----------KSPVFVVATANN--------I---  370 (491)
T ss_pred             HHHHCC-EEEEEEHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCC-----------CCCEEEEEECCC--------C---
T ss_conf             986198-58997465454258888888723289999999986468-----------997699995899--------7---


Q ss_pred             HHHHHHHHHHHCCHHHHC--CCCCEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf             999999998628857726--668158628899899999999999999
Q gi|254780877|r  733 HDKVMGIVRSAFKPEFLN--RLDEIILFEKLRKEDMAKIVRIQLGRV  777 (853)
Q Consensus       733 ~~~~~~~l~~~f~pefln--Rid~iv~F~~l~~~~~~~i~~~~l~~l  777 (853)
T Consensus       371 ---------~~L~pellR~GRFD~~~~v~lP~~~~R~~I~~ihl~~~  408 (491)
T CHL00195        371 ---------DSLPLELLRKGRFDEIFFLDLPNLEERELIFKIHLKRF  408 (491)
T ss_pred             ---------CCCCHHHCCCCCCCEEEECCCCCHHHHHHHHHHHHHCC
T ss_conf             ---------55898770898777047648959899999999998544