HHsearch alignment for GI: 254780877 and conserved domain: COG0464
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].
Probab=99.66 E-value=4.8e-13 Score=124.98 Aligned_cols=178 Identities=26% Similarity=0.361 Sum_probs=111.1
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHCCCCHHCCCCCC--CCCCHHHHCCCCCE
Q ss_conf 6512898726786168899999998723776530022447740345320130477112035667--74211322156410
Q gi|254780877|r 596 RPMGSFMFLGPTGVGKTELVKSLARLLFDDENSMIRIDMSEYMEKHSVSRLIGSPPGYVGYEEG--GALTEAVRRHPYQV 673 (853)
Q Consensus 596 ~p~~~flf~GptGvGKTelak~la~~lf~~~~~lir~dMsey~e~~~vs~LiGappGYvG~~~g--g~Lte~vr~~P~sV 673 (853)
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~s------------k~vGesek~ir~~F~~A~~~~p~i 338 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLS------------KWVGESEKNIRELFEKARKLAPSI 338 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHC---CCCEEEECCHHHHH------------HHHHHHHHHHHHHHHHHHHCCCCE
T ss_conf 888369998899975899999987544---98248843355540------------776599999999999999669988
Q ss_pred EEEHHHHHC----C-------HHHHHHHHHHHHCCEEECCCCCEEECCCCEEEECCCHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 220214414----9-------89999999984045788799977830331559548512687640326799999999986
Q gi|254780877|r 674 VLFDEIEKA----H-------SDVHNILLQVLDDGRLTDSQGRTVDFRNTLIIMTSNLGAEYLIEDGDSVHDKVMGIVRS 742 (853)
Q Consensus 674 il~DEiEKa----h-------~~v~~~llqild~G~ltd~~G~~v~f~n~iii~TsN~G~~~~~~~~~~~~~~~~~~l~~ 742 (853)
T Consensus 339 ifiDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e---------~~~~v~vi~aTN~--------p~~----------- 390 (494)
T COG0464 339 IFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVLVIAATNR--------PDD----------- 390 (494)
T ss_pred EEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCC---------CCCCEEEEECCCC--------CCC-----------
T ss_conf 974886667412899876379999999999974754---------4376489964798--------332-----------
Q ss_pred HCCHHHH--CCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 2885772--66681586288998999999999999999999857989999889999999708982206215799999873
Q gi|254780877|r 743 AFKPEFL--NRLDEIILFEKLRKEDMAKIVRIQLGRVLSLIKERNISMDFDDQVIDWLSCRGYDPSYGARPLKRVIQRYI 820 (853)
Q Consensus 743 ~f~pefl--nRid~iv~F~~l~~~~~~~i~~~~l~~l~~~l~~~~i~l~~~~~~~~~l~~~~~~~~~GaR~l~r~i~~~i 820 (853)
T Consensus 391 -ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~--------~~~~~~~~~l~~~--t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 391 -LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP--------LAEDVDLEELAEI--TEGYSGADIAALVREAA 459 (494)
T ss_pred -CCHHHHCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCC--------HHHHHHHHHHHHH--HCCCCHHHHHHHHHHHH
T ss_conf -687562436630378717989899999999985415651--------1556419999987--52778999999999999
Q ss_pred HHHHHHH
Q ss_conf 3499999
Q gi|254780877|r 821 QNPLAER 827 (853)
Q Consensus 821 ~~~la~~ 827 (853)
T Consensus 460 ~~~~~~~ 466 (494)
T COG0464 460 LEALREA 466 (494)
T ss_pred HHHHHHC
T ss_conf 9899854