HHsearch alignment for GI: 254780877 and conserved domain: COG0464
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].
Probab=99.16 E-value=7e-09 Score=91.14 Aligned_cols=142 Identities=27% Similarity=0.448 Sum_probs=108.1
Q ss_pred CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHCCCEEEEEEHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 77786689528874077799999998734899844457437887313542174542024545899999986079976999
Q gi|254780877|r 197 RTKNNPVLIGDPGVGKTAIIEGLASRIINGDIPESLKGKRLMALDMGALIAGAKFRGEFEERLKSLLCEIRSEDGEIILF 276 (853)
Q Consensus 197 ~~k~n~~lvGe~GvGKtaive~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~rg~~e~r~~~i~~~~~~~~~~~ilf 276 (853)
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~----------~~~~~fi~v~~~~l~--sk~vGesek~ir~~F~~A~~~-~p~iif 340 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVAL----------ESRSRFISVKGSELL--SKWVGESEKNIRELFEKARKL-APSIIF 340 (494)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHH----------HCCCCEEEECCHHHH--HHHHHHHHHHHHHHHHHHHHC-CCCEEE
T ss_conf 8883699988999758999999875----------449824884335554--077659999999999999966-998897
Q ss_pred ECCHHHHCCCCCCC--CCC-CH-HHHHHHH--H-CCCCEEEEEEECHHHHHHHHHCCHHHHH--CCCE-EECCCCCHHHH
Q ss_conf 63627730266655--433-58-8887653--1-2466048997448999997300111320--2311-11157776789
Q gi|254780877|r 277 IDELHVLVGAGKTD--GAM-DA-SNLLKPS--L-ARGELHCIGATTLDEYRKYIEKDPALAR--RFQS-LLVGEPTVTDT 346 (853)
Q Consensus 277 ide~h~~~gaG~~~--g~~-Da-an~LKP~--L-arG~l~~IgaTT~~Eyrk~iEkD~Al~R--RFq~-i~V~Eps~~~t 346 (853)
T Consensus 341 iDEiDs~~~~r~~~~~~~~~rv~~~ll~~~d~~e~~~~v~vi~aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r 415 (494)
T COG0464 341 IDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEER 415 (494)
T ss_pred HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC-----CCCHHHHCCCCCEEEEEECCCCHHHH
T ss_conf 4886667412899876379999999999974754437648996479833-----26875624366303787179898999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999997898
Q gi|254780877|r 347 ISILRGLKER 356 (853)
Q Consensus 347 ~~iL~gl~~~ 356 (853)
T Consensus 416 ~~i~~~~~~~ 425 (494)
T COG0464 416 LEIFKIHLRD 425 (494)
T ss_pred HHHHHHHHCC
T ss_conf 9999998541